BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002260
(946 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576254|ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I, putative [Ricinus communis]
Length = 891
Score = 1213 bits (3138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/922 (71%), Positives = 739/922 (80%), Gaps = 53/922 (5%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKR-NTAASRQNLANPEVKRP--SSSTANGQNSNAP 101
MA A++KP+ +DD+D P VFKR N + ++QN +NPEVK+P SS +NGQ+SNA
Sbjct: 3 MAAPATAKPNIYEYDEDDDDMPLVFKRGNNSTTKQNQSNPEVKKPLLSSQNSNGQSSNAQ 62
Query: 102 KDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESS 161
K K+TV S K PVKSP S KA+TSSAKASP ++SPVANSK SS
Sbjct: 63 KGKSTVPSLKASPVKSPIGSPKASTSSAKASP----------------LRSPVANSKGSS 106
Query: 162 PLDDRLKQSPQHNALAVVK-----KEEIKDGNGLKS---------DDNDSEDDKPLSARL 207
LD++LKQ+ + NA VVK K EI GLKS DD DSEDD PLSAR
Sbjct: 107 SLDEQLKQASKQNASNVVKDVSSAKPEI----GLKSVKHETKSNGDDEDSEDDLPLSARR 162
Query: 208 KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDE-VPLSSRFP-KSNAGTSGAKPIDSD 265
KGN+ NV++ + A K + EDSDD+ VPL SRFP KS AGTSG KP +
Sbjct: 163 KGNTNNVSKVVTAPK----------RVKDEDSDDDKVPLCSRFPMKSTAGTSGNKPNNIS 212
Query: 266 EKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQV 325
EKKPL SKVQQNGSTS++ QQK+ +P KRPL KA+SS SS KKPK+S S KVKQ
Sbjct: 213 EKKPLPSKVQQNGSTSKDKQQKAPLIPTKRPLDKANSSEQSSIKKPKLSAGSTITKVKQA 272
Query: 326 TVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQ 385
TVK E+ DD D IPI+QR K+ S K + KA K VSSS K KK KK +KN++
Sbjct: 273 TVKAEE--DDPDDIPIAQRKKSLGSSESKLSSAKQKAIKVVSSSFKKPIKKNKKQMKNTK 330
Query: 386 YSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFA 445
YSKSTK+ P S DGQKKWTTL+HNGVIFPPPY PHG+K+LYKG+ V+L PEQEEVATMFA
Sbjct: 331 YSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKPHGIKILYKGRPVDLAPEQEEVATMFA 390
Query: 446 VMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
VM DTDYMQKPKF ENFWNDWRKLLG+NHVIQ LE CDF PIY+WH+ +KEKKKQMS+EE
Sbjct: 391 VMKDTDYMQKPKFLENFWNDWRKLLGRNHVIQKLEDCDFTPIYEWHEREKEKKKQMSTEE 450
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
KKA KEEK +QEEKYMWAIVDGVKEKVGNFRVEPP LFRGRGEHPKMGKLKKRIQPSDIT
Sbjct: 451 KKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEPPALFRGRGEHPKMGKLKKRIQPSDIT 510
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
INIGKD PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+
Sbjct: 511 INIGKDAPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDK 570
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
EKYEKARKLKDYIH+IRAAY KD S+D T++QIAVATYLIDKLALRAGNEKDDDEADTV
Sbjct: 571 EKYEKARKLKDYIHNIRAAYQKDLRSKDITKKQIAVATYLIDKLALRAGNEKDDDEADTV 630
Query: 686 GCCTLKVGNVECIPPN-KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
GCCTLKV NVECIP + LKFDFLGKDSI+Y NTVEV+ VY+AIG FQ GKKQ DDLFD
Sbjct: 631 GCCTLKVANVECIPGSFNLKFDFLGKDSIRYENTVEVKPEVYEAIGTFQKGKKQTDDLFD 690
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
KLDT KLNAHLKELMPGLTAKVFRTYNASITLD L + T DGDVA K+ +YQRANKEVA
Sbjct: 691 KLDTTKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAEKVVIYQRANKEVA 750
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
IICNHQRT+SK+H AQMS+L EKIE+LK LK+L+ DLDRAKKGKPPL KD+DGK+KRNL
Sbjct: 751 IICNHQRTISKSHGAQMSKLIEKIEELKATLKELKTDLDRAKKGKPPL-KDADGKQKRNL 809
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
+PE +E+K+A TN +IEKME +MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK
Sbjct: 810 SPENIEKKIASTNQRIEKMELNMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 869
Query: 925 IFNKSLLAKFAWAMDVDPEFRF 946
IFNKSLLAKF WAMDVDP+FRF
Sbjct: 870 IFNKSLLAKFTWAMDVDPQFRF 891
>gi|224061073|ref|XP_002300344.1| predicted protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 635/888 (71%), Positives = 710/888 (79%), Gaps = 39/888 (4%)
Query: 65 GPAVFKRN-TAASRQNLANPEVKRPSSSTANGQNS--NAPKDKTTVSSSKVLPVKSPPPS 121
GP VFKR + S+QN NPE K+PSSS+ N N K K+ + SS P+KS
Sbjct: 23 GPIVFKRGGNSTSKQNQLNPEAKKPSSSSQNSNGQSLNLQKGKSPIPSSNASPMKS---- 78
Query: 122 QKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKK 181
S ++ S SP+KSP+ ++ + +D+LKQ+ + VK+
Sbjct: 79 ------------STGSPKASASSAKASPLKSPLTYTRALTSSNDQLKQASKQVVSNAVKE 126
Query: 182 EEIKDGNGLKS--DDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDS 239
E KS DD DSEDDKPLS+R+KG++ NVN+G+ A +VK +P D
Sbjct: 127 E-------TKSIVDDEDSEDDKPLSSRIKGSTNNVNKGVTAP--------AHVKDEPSD- 170
Query: 240 DDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQ 298
DDEVPLSSRF KSNAGTS +K I S E +P SK Q NGST + QQKSS VP KRP+
Sbjct: 171 DDEVPLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKRPMD 230
Query: 299 KASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTN 358
S SSAKKPK+ D KVKQVTVKVE+KADDDDH+ ISQRMK + S KS
Sbjct: 231 NKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKKADSSANKSSFA 290
Query: 359 TAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYL 418
K TK VSSS K +K KK +KNS+YSKSTK+ PGS DGQKKWTTLVHNGVIFPPPY
Sbjct: 291 KKKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYK 350
Query: 419 PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQN 478
PHGVK+LYKGK ++LTPEQEEVATMFAVM DTDY+QKP+FR+NFWNDWRKLLGKNHVIQ
Sbjct: 351 PHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQK 410
Query: 479 LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVE 538
L+ CDF PIY+WHQ++KEKKKQMS+EEKK LKEEK KQEEKYMWAIV+GVKEKVGNFRVE
Sbjct: 411 LDDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVE 470
Query: 539 PPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAF 598
PPGLFRGRGEHPKMGKLK RI+PSDITINIGKD PIPECPIPGE WKEVKHDNTVTWLAF
Sbjct: 471 PPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAF 530
Query: 599 WNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQ 658
WNDPINPKEFKYVFLAASSSLKGQSD+EKYEKARKLKDYIH+IRAAYTKDF S+D T+RQ
Sbjct: 531 WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQ 590
Query: 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNT 718
IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVECIPPNKLKFDFLGKDSI+Y NT
Sbjct: 591 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENT 650
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
VEVELPVYKAIG FQ KKQ DDLFD LDT+KLNAHLKELMPGLTAKVFRTYNASITLD
Sbjct: 651 VEVELPVYKAIGHFQVAKKQTDDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDE 710
Query: 779 MLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L + T DGDVA KI +Y +ANK+VAIICNHQRT+SK+H AQMSRLTEKIE+LK LK+L
Sbjct: 711 KLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKIEELKSTLKEL 770
Query: 839 RVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
+ DLDRAKKGKPPL K +DGK+KR+L PEA+E+K+A TN KIEKME MKTKEDLKTVAL
Sbjct: 771 KTDLDRAKKGKPPL-KGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMKTKEDLKTVAL 829
Query: 899 GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
GTSKINYLDPRITVAWCKRHEVPI+KIFNKSLLAKF WAMDVDP+FRF
Sbjct: 830 GTSKINYLDPRITVAWCKRHEVPIDKIFNKSLLAKFTWAMDVDPQFRF 877
>gi|187369231|dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/925 (68%), Positives = 715/925 (77%), Gaps = 54/925 (5%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSS------------- 91
MAV+A K ++ D D++D P VFKR+ A S+ N N + K+ S
Sbjct: 1 MAVQACVK-EKMMDEIDEDDEPLVFKRSNATSKHNQLNSDTKKSSQRYDGQSGRQVSDVP 59
Query: 92 TANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVK 151
+ NGQ+S+A K KTT SS +KSP S KA+TS AKASP
Sbjct: 60 STNGQSSSASKGKTTKLSS----MKSPIASPKASTSFAKASP------------------ 97
Query: 152 SPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL---- 207
VAN K SS DDR K S + N + VVK EE + N DSED+KPLSARL
Sbjct: 98 --VANPKVSSSSDDRSKHSSKQNTINVVK-EEKELVNPAAEPYGDSEDEKPLSARLFTGL 154
Query: 208 -KGNSKNVNQG-IGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDS 264
KG+S N N+G I +S A + + + +DSDDE+PLSS+F K+NAGTS K +S
Sbjct: 155 TKGSSNNANKGLINSSPASLPVPKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYES 214
Query: 265 DEKKPLASKVQQNGSTSRETQQKSSSVPV-KRPLQKASSSGASSAKKPKVSDTSKEVKVK 323
D+ K L S QQNGS +R ++ SS+ V KRPL + SS SS KKPK+SD S V K
Sbjct: 215 DDNKTLVSNFQQNGSINRGSK---SSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNK 271
Query: 324 QVTVKVEKKADD--DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVI 381
Q + K E KADD DDH+PISQRMK SA S KS T K TK VSSS K +KK KKV+
Sbjct: 272 QASKKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQKVTKVVSSSMKKASKKFKKVV 331
Query: 382 KNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVA 441
K S+YSKS+K+ P SG+G KKW TLVHNGVIFPPPY PHGVKMLYKGK V+LTPEQEEVA
Sbjct: 332 KKSKYSKSSKVPPSSGEG-KKWNTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVA 390
Query: 442 TMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQM 501
TMFAVMLDTDYM K KF+ENF +DWRK+LGKNHVIQNLE CDF PIY+WHQ +KEKKK+M
Sbjct: 391 TMFAVMLDTDYMTKSKFKENFMDDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKKM 450
Query: 502 SSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQP 561
++EEKK LKEE+ KQEEKYMWAIV+GVKEKVGNFRVEPP LFRGRGEHPKMGKLKK I+P
Sbjct: 451 TAEEKKVLKEERLKQEEKYMWAIVNGVKEKVGNFRVEPPSLFRGRGEHPKMGKLKKCIRP 510
Query: 562 SDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKG 621
SDITINIGKD PIPECPIPGESWKE++HDNTVTWLAFWNDPI P+EFKYVFLAASSSLKG
Sbjct: 511 SDITINIGKDAPIPECPIPGESWKEIRHDNTVTWLAFWNDPIKPREFKYVFLAASSSLKG 570
Query: 622 QSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE 681
QSD+EKYEKAR LKD+I IRAAYTKDF S+D T+RQIAVATYLIDKLALRAGNEKDDDE
Sbjct: 571 QSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDE 630
Query: 682 ADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDD 741
ADTVGCCTLKV NVE PP+ LKFDFLGKDSI+Y N VEVELPVYKAI QF+TGK+ DD
Sbjct: 631 ADTVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEVEVELPVYKAIQQFRTGKRGGDD 690
Query: 742 LFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANK 801
LFDKLDT+KLNAHLK LMPGLTAKVFRTYNASITLD ML++ T G+VA KI VYQ ANK
Sbjct: 691 LFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASITLDEMLSRETKGGNVAEKIVVYQHANK 750
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRK 861
EVAIICNHQRTVSK+H AQM+RL KI++LKG+L L+ DL RAKKGKPPL +D+DGK K
Sbjct: 751 EVAIICNHQRTVSKSHPAQMTRLNGKIDELKGILDGLQTDLARAKKGKPPL-EDADGKPK 809
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
RNL PEALERK+ QTNAKIEKMERD +TKE LKT+ALGTSKI+YLDPRITVAWCKRHEVP
Sbjct: 810 RNLTPEALERKIGQTNAKIEKMERDKETKEGLKTIALGTSKISYLDPRITVAWCKRHEVP 869
Query: 922 IEKIFNKSLLAKFAWAMDVDPEFRF 946
IEK+FNKSLLAKFAW+MDVDP FRF
Sbjct: 870 IEKVFNKSLLAKFAWSMDVDPSFRF 894
>gi|224116648|ref|XP_002317355.1| predicted protein [Populus trichocarpa]
gi|222860420|gb|EEE97967.1| predicted protein [Populus trichocarpa]
Length = 860
Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/907 (69%), Positives = 710/907 (78%), Gaps = 52/907 (5%)
Query: 45 MAVEASSKPS-RVYDFDDDEDGPAVFKRN-TAASRQNLANPEVKRPSSSTANGQNS--NA 100
M V+A KP ++ DDD+DGP VFKR + S+QN N E K+PSSS+ N NA
Sbjct: 1 MVVQAPPKPILNNFNDDDDDDGPIVFKRGGNSTSKQNQPNLEAKKPSSSSQNSNGQSLNA 60
Query: 101 PKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKES 160
K K+ +SSS PVKSP + ++ +S SPM+ PV + R P S +A +E+
Sbjct: 61 HKGKSPISSSNASPVKSP----IGSPKASASSAKASPMKPPV-TYSRVP-SSSIAVKEET 114
Query: 161 SPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGA 220
P+ DD+DSEDDKPLS+R KG++ N N+G+
Sbjct: 115 KPI----------------------------VDDDDSEDDKPLSSRFKGSTNNANKGVTV 146
Query: 221 SKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLASKVQQNGS 279
VK D DDEVPLSSRF KSNAG+S K I S EK L SK+Q NGS
Sbjct: 147 P--------ARVK-DEHSDDDEVPLSSRFAAKSNAGSSSCKTISSSEKILLVSKIQLNGS 197
Query: 280 TSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHI 339
T+++ QQKSS+VP KRP+ S S AKKPK+SD S KQVTVK E KADDDDH+
Sbjct: 198 TAKDKQQKSSAVPTKRPMDNKVPSNQSFAKKPKLSDAST---TKQVTVKAELKADDDDHL 254
Query: 340 PISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDG 399
ISQRMK ++ S KS++ TK VS SS K K KK ++NS+YSKSTK+ PGS DG
Sbjct: 255 TISQRMKKASSSSNKSLSVKQNVTKVVSFSSKKTTKNNKKQMQNSKYSKSTKVQPGSSDG 314
Query: 400 QKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
QKKW TLVHNGVIFPPPY PHGVKMLYKGK V+LTPEQEEVATMFAVM DT+Y+QKP+F
Sbjct: 315 QKKWKTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMKDTEYVQKPQFL 374
Query: 460 ENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
+NFWNDWR LLGKNHVIQ LE CDF PIY+WHQ++KEKKKQMS+EEKKA++EEK KQEE
Sbjct: 375 QNFWNDWRTLLGKNHVIQKLEACDFNPIYEWHQKEKEKKKQMSTEEKKAVREEKLKQEEM 434
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPI 579
YMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RI+PSDITINIGKD PIP+CPI
Sbjct: 435 YMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPKCPI 494
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
PGE WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+EKYEKARKLKDYIH
Sbjct: 495 PGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIH 554
Query: 640 SIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP 699
+IR AYTKDF S+D T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVECIP
Sbjct: 555 NIRTAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIP 614
Query: 700 PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELM 759
PNKLKFDFLGKDSI+Y NTVEVELPVYKAI QFQ KK DDLFD LDT+KLNAHLKELM
Sbjct: 615 PNKLKFDFLGKDSIRYENTVEVELPVYKAIRQFQVAKKPTDDLFDSLDTSKLNAHLKELM 674
Query: 760 PGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSA 819
PGLTAKVFRTYNASITLD L + T DGDVA K +Y +ANK+VAIICNHQRT+SK+H A
Sbjct: 675 PGLTAKVFRTYNASITLDEKLYEETEDGDVAEKFVIYNQANKQVAIICNHQRTISKSHDA 734
Query: 820 QMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAK 879
QMSRLTEK+E+LKG LK+ + DLDRAKKGKPPL KD+DGK+KRNL PEA+E+K+A TN K
Sbjct: 735 QMSRLTEKLEELKGTLKEFKTDLDRAKKGKPPL-KDADGKQKRNLTPEAIEKKIATTNQK 793
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
IEKME MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF WAMD
Sbjct: 794 IEKMELSMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMD 853
Query: 940 VDPEFRF 946
VDP+FRF
Sbjct: 854 VDPQFRF 860
>gi|449463731|ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
gi|449503189|ref|XP_004161878.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
Length = 889
Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/920 (67%), Positives = 717/920 (77%), Gaps = 49/920 (5%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSS------------- 91
MAVE K + ++D DD+++ P VFKR T+ASRQN + E+K +
Sbjct: 1 MAVETFGK-APMFDDDDEDNMPIVFKR-TSASRQNQLDSEIKHSQAQRLSKLPGRQGSDL 58
Query: 92 -TANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
+ NGQ+SN K T++ K P++S SQKA+ SS P+ P+
Sbjct: 59 CSTNGQSSNNQKRMTSLP--KTSPMRSEIGSQKASRSS------------PIPEPL---T 101
Query: 151 KSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGN 210
KS + K S +D R P+ AVVK+E + +++DSEDDKPLS RLKGN
Sbjct: 102 KSLGTSLKASHSMDSR----PKSLVNAVVKEENVSINPS--QENSDSEDDKPLSIRLKGN 155
Query: 211 SKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNA-GTSGAKPIDSDEKKP 269
N+G+ ++ + + VK DSDDEVPLSS+F +A G G+K DEKKP
Sbjct: 156 PNQPNKGLVST-----VPKNKVKKSLADSDDEVPLSSKFQMKHASGVLGSKQHGFDEKKP 210
Query: 270 LASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASS--AKKPKVSDTSKEVKVKQVTV 327
L KV QNGSTSR+ QK + + KRPL S S KKPK++D+S + K V++
Sbjct: 211 LVPKVHQNGSTSRDKLQKPAVLSSKRPLPNEDSHSPSQFPTKKPKLTDSSSPLNSKLVSL 270
Query: 328 KVEKKADDDDH-IPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQY 386
K +++ DDDD IPISQRMK + +V KS ++ +K VSSS K KK+KK +K S+Y
Sbjct: 271 KAKQEVDDDDDDIPISQRMKKVSATVNKSSSSKPTISKVVSSSIKKTFKKSKKPVKKSKY 330
Query: 387 SKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAV 446
KSTK+LP +GDGQKKWTTLVHNGVIFPPPY HGVKMLYKGK V+LTP QEEVATMFAV
Sbjct: 331 VKSTKLLPSAGDGQKKWTTLVHNGVIFPPPYQTHGVKMLYKGKPVDLTPPQEEVATMFAV 390
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEK 506
M DTDYM KPKF+ENFWNDWRKLLGKNHVIQNL+ CDF PIYDW+Q +KEKKKQM++EEK
Sbjct: 391 MKDTDYMLKPKFKENFWNDWRKLLGKNHVIQNLDDCDFTPIYDWYQMEKEKKKQMTTEEK 450
Query: 507 KALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITI 566
KA+KEEK KQEEKYMWAI+DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSDITI
Sbjct: 451 KAVKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPSDITI 510
Query: 567 NIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
NIGK PIPECPIPGE WKEV+HDNTVTWLAFWNDPIN KEFKYVFLAASSSLKGQSD+E
Sbjct: 511 NIGKGAPIPECPIPGERWKEVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKE 570
Query: 627 KYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVG 686
KYEKAR LKDYI +IR AYTKDF S+D TRRQIAVATYLIDKLALRAGNEKDDDEADTVG
Sbjct: 571 KYEKARMLKDYIKNIRNAYTKDFTSKDPTRRQIAVATYLIDKLALRAGNEKDDDEADTVG 630
Query: 687 CCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKL 746
CCTLKV NV+ +PPN L+F+FLGKDSI+Y NTVEVELPV+KAI QFQ+GK DDLFDKL
Sbjct: 631 CCTLKVENVKAVPPNLLEFNFLGKDSIRYENTVEVELPVFKAITQFQSGKSGTDDLFDKL 690
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAII 806
DT+KLNAHLK+LMPGLTAKVFRTYNASITLD MLN+GT +G+V+ KI YQ ANKEVAII
Sbjct: 691 DTSKLNAHLKDLMPGLTAKVFRTYNASITLDDMLNRGTKNGEVSEKIVTYQHANKEVAII 750
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP 866
CNHQRTVSK+H AQM+RL EKI +L+ +LK+L++DLDRAKKGKPPL K SDGK+KRNL P
Sbjct: 751 CNHQRTVSKSHGAQMTRLNEKISELRDILKELKIDLDRAKKGKPPL-KGSDGKQKRNLTP 809
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
EALE+K++QTNAKIEK+ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF
Sbjct: 810 EALEKKISQTNAKIEKIERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 869
Query: 927 NKSLLAKFAWAMDVDPEFRF 946
NKSLLAKFAWAMDVDP+FRF
Sbjct: 870 NKSLLAKFAWAMDVDPDFRF 889
>gi|187369229|dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/952 (64%), Positives = 710/952 (74%), Gaps = 75/952 (7%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + P+ + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACT-PNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 58
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S+K PVKSP S KA+ SSAKASP +
Sbjct: 59 RPANGESSSAQKGRIQ-PSAKTPPVKSPLSSPKASNSSAKASP----------------I 101
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL-- 207
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPLSAR
Sbjct: 102 TSPGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFG 161
Query: 208 ---KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRF-PKSNAGTSGAKPID 263
KG S + N+ G D+ V + EDS+DE PLS RF KS+ G S +K D
Sbjct: 162 CSSKGKSNHANKEGG----DSCSIRRRVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYD 217
Query: 264 SDEKKPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKV 322
SDEKKPLA+KVQQNGS SR+ KS+S+ KRP + S SS KKPK+S +
Sbjct: 218 SDEKKPLAAKVQQNGSVSRDGPMNKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISN 277
Query: 323 KQVTVKVEK---------------------------KADDDDHIPISQRMKNSAPSVKKS 355
KQ VK E K +DDD++PI+QR+K S SV KS
Sbjct: 278 KQAAVKPEPEPKAEDDDDNIPLSQRGKKSQAATSKPKDEDDDNVPIAQRIKKSPASVSKS 337
Query: 356 VTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPP 415
KA+ VS S K+NK +KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGVIFPP
Sbjct: 338 SAPVKKASTVVSPSLKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVIFPP 396
Query: 416 PYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV 475
PY PHGVKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH
Sbjct: 397 PYNPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHT 456
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
IQNLE CDF PIY+WHQ++KEKKKQM++EEKKALKE+K +QEEKYMWAIVDGVKEKVGNF
Sbjct: 457 IQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEDKLQQEEKYMWAIVDGVKEKVGNF 516
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
RVEPPGLFRGRGEHPKMGKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTW
Sbjct: 517 RVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTW 576
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDG 654
LAFW DPIN KEFKYVFLAASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D
Sbjct: 577 LAFWIDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDP 636
Query: 655 TRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQ 714
++QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LKFDFLGKDSI+
Sbjct: 637 MKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIR 696
Query: 715 YVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASI 774
Y N V+VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASI
Sbjct: 697 YQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASI 756
Query: 775 TLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGV 834
TLD ML+K T G+VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK
Sbjct: 757 TLDDMLSKETKGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTA 816
Query: 835 LKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLK 894
+++L+ DL R KKGKPP K +DGK KRNL PEALERKMAQ NAKIEKMERD +TKEDLK
Sbjct: 817 MEELKTDLSRVKKGKPP-SKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKEDLK 875
Query: 895 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW+MDVDP FRF
Sbjct: 876 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 927
>gi|334683317|dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/950 (64%), Positives = 710/950 (74%), Gaps = 73/950 (7%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DD GP +FKR+ A +QN AN E K+ S
Sbjct: 1 MAVEACTT-NLMEDMEDD-GGPVIFKRSKPAPKQNQANSEKKKLSLQKQDGQSAVHTSDV 58
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S+K PVKSP S KA+ SSAKASP +
Sbjct: 59 RPANGESSSAQKGRIQ-PSAKTPPVKSPLSSPKASNSSAKASP----------------I 101
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL-- 207
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPLSAR
Sbjct: 102 TSPGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFG 161
Query: 208 ---KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRF-PKSNAGTSGAKPID 263
KG S + N+ G D+ V + EDS+DE PLS RF KS+ G S +K D
Sbjct: 162 CSSKGKSNHANKEGG----DSCSIRRPVIEESEDSEDEKPLSCRFTSKSSLGESTSKSYD 217
Query: 264 SDEKKPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKV 322
SDEKKPLA+KVQQNGS SR+ KS+S+ KRP +A S SS KKPK+S +
Sbjct: 218 SDEKKPLAAKVQQNGSASRDGPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISN 277
Query: 323 KQVTVKVEKKA-------------------------DDDDHIPISQRMKNSAPSVKKSVT 357
KQ VK E KA DDDD++PISQR+K S SV KS
Sbjct: 278 KQAAVKPEPKAEDDDDNIPLSQRGKKSQSATSKPKDDDDDNVPISQRIKKSPASVSKSSV 337
Query: 358 NTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY 417
KA+ VSSS K+NK +KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGVIFPPPY
Sbjct: 338 PVKKASTVVSSSLKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVIFPPPY 396
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQ 477
PHGVKMLYK + + LTPEQEEVATMFAVMLDTDYM KP F+ENF++DW+K+LGKNH+IQ
Sbjct: 397 KPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPCFKENFFSDWKKILGKNHMIQ 456
Query: 478 NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRV 537
NLE CDF PIY+WHQ++KEKKKQM++EEKKALKEEK +QEEKYMWAIVDGVKEKVGNFRV
Sbjct: 457 NLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRV 516
Query: 538 EPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLA 597
EPPGLFRGRGEHPKMGKLKKRI+P DITINIGKD PIPECPIPGE WKEV++ NTVTWLA
Sbjct: 517 EPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNGNTVTWLA 576
Query: 598 FWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTR 656
+WNDPIN KEFKYVFLAASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D +
Sbjct: 577 YWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMK 636
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYV 716
+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LKFDFLGKDSI+Y
Sbjct: 637 KQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQ 696
Query: 717 NTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
N V+VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITL
Sbjct: 697 NEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITL 756
Query: 777 DGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLK 836
D ML+K T G+VA + VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L+
Sbjct: 757 DDMLSKETKGGEVAENVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALE 816
Query: 837 DLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
+L+ DL RAKKGKPP K +DGK KRNL PEALERK+ QTNAKIEKMERD +TKEDLKTV
Sbjct: 817 ELKTDLSRAKKGKPP-TKGADGKAKRNLNPEALERKITQTNAKIEKMERDKETKEDLKTV 875
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW+MDVDP FRF
Sbjct: 876 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 925
>gi|187369225|dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
Length = 926
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/946 (63%), Positives = 704/946 (74%), Gaps = 64/946 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + P+ + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTPNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSG 162
Query: 210 -NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
+SK + D+ V + EDS+DE PLS RFP KS+ G S +K DSDEK
Sbjct: 163 CSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSHDSDEK 222
Query: 268 KPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA+KVQQNGS SR+ KS+S+ KR + S SS KKPK+S T + KQ
Sbjct: 223 KPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSTITSISNKQAA 282
Query: 327 VKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTAK 361
VK E KA+DDD + PISQR+K S SV KS K
Sbjct: 283 VKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKK 342
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG 421
A+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGV+FPPPY PHG
Sbjct: 343 ASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVMFPPPYKPHG 401
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEG 481
VKMLYK + + LTPEQEEVATMFA MLDTDYM KP+F+ENF++DW+K+LGKNH IQNLE
Sbjct: 402 VKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGKNHTIQNLED 461
Query: 482 CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPG 541
CDF PIY+WHQ++KEKKKQM++EEKKALKEE+ + EEKYMWAIVDGVKEKVGNFRVEPPG
Sbjct: 462 CDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQLEEKYMWAIVDGVKEKVGNFRVEPPG 521
Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
LFRGRGEHPK+GKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA+WND
Sbjct: 522 LFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWND 581
Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQIA 660
P+N KE KYVFLAASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D ++Q+A
Sbjct: 582 PVNLKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQVA 641
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LK DF+GKDSI+Y N V+
Sbjct: 642 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNEVQ 701
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 702 VEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 761
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T G VA K+ VYQRANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 762 SKETKGGKVAEKVGVYQRANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKT 821
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DL RAKKGKPP K DG+ KRNL PEALERK+AQTNAKIEKMERD KTKEDLK VAL T
Sbjct: 822 DLSRAKKGKPP-SKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALST 880
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKI+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAMDVDP FRF
Sbjct: 881 SKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMDVDPSFRF 926
>gi|187369227|dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
Length = 926
Score = 1092 bits (2825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/946 (63%), Positives = 702/946 (74%), Gaps = 64/946 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + P+ + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTPNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSG 162
Query: 210 -NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
+SK + D+ V + EDS+DE PLS RFP KS+ G S +K DSDEK
Sbjct: 163 CSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEK 222
Query: 268 KPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA+KVQQNGS SR+ KS+S+ KR + S SS KK K+S + KQ
Sbjct: 223 KPLATKVQQNGSASRDGPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSISNKQAA 282
Query: 327 VKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTAK 361
VK E KA+DDD + PISQR+K S SV KS K
Sbjct: 283 VKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKK 342
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG 421
A+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGV+F PPY PHG
Sbjct: 343 ASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVMFLPPYKPHG 401
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEG 481
VKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH +QNLE
Sbjct: 402 VKMLYKXQPLTLTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGKNHTVQNLED 461
Query: 482 CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPG 541
CDF PIY+WHQ++KEK+KQM++EEKKALKEE+ +QEEKYMWAIVDGVKEKVGNFRVEPPG
Sbjct: 462 CDFGPIYEWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMWAIVDGVKEKVGNFRVEPPG 521
Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
LFRGRGEHPKMGKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTWLAFWND
Sbjct: 522 LFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWND 581
Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQIA 660
PIN KE KYVFLAASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D ++QIA
Sbjct: 582 PINQKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIA 641
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LK DF+GKDSI+Y N V+
Sbjct: 642 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNEVQ 701
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+KAI QF++GK+ DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 702 VEPAVFKAIQQFRSGKEGCADLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 761
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T G VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 762 SKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKT 821
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DL RAKKGKPP K +DG+ KRNL PE+LERK+AQTNAKIEKMERD KTKEDLK VAL T
Sbjct: 822 DLSRAKKGKPP-AKGADGEPKRNLNPESLERKIAQTNAKIEKMERDKKTKEDLKAVALST 880
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKI+YLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW+MDVDP FRF
Sbjct: 881 SKISYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 926
>gi|334683313|dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/943 (64%), Positives = 708/943 (75%), Gaps = 72/943 (7%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTTNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG+NS+A K + S+K PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGENSSAQKGRIQ-PSAKTPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL-- 207
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPLSAR
Sbjct: 103 TSPGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFG 162
Query: 208 ---KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRF-PKSNAGTSGAKPID 263
KG S + N+ G D+ V + EDS+DE PLS RF KS+ G S +K D
Sbjct: 163 CSSKGKSNHANKEGG----DSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYD 218
Query: 264 SDEKKPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKV 322
SDEKKPLA+KVQ NGS SR++ KS+S+ KRP + S SS KKPK+S +
Sbjct: 219 SDEKKPLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISN 278
Query: 323 KQVTVKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVT 357
KQ VK E KA+DDD ++PISQR+K S SV KS
Sbjct: 279 KQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSA 338
Query: 358 NTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY 417
KA+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGVIFPPPY
Sbjct: 339 PVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVIFPPPY 397
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQ 477
PHGVKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH IQ
Sbjct: 398 KPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQ 457
Query: 478 NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRV 537
NLE CDF PIY+WHQ++KEKKKQM++EEKKALKEEK +QEEKYMWAIVDGVKEKVGNFRV
Sbjct: 458 NLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRV 517
Query: 538 EPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLA 597
EPPGLFRGRGEHPKMGKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA
Sbjct: 518 EPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLA 577
Query: 598 FWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTR 656
+WNDPIN KEFKYVFLAASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D +
Sbjct: 578 YWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMK 637
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYV 716
+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LKFDFLGKDSI+Y
Sbjct: 638 KQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQ 697
Query: 717 NTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
N V+VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITL
Sbjct: 698 NEVQVEPAVFKAIHQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITL 757
Query: 777 DGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLK 836
D ML+K T G+VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L+
Sbjct: 758 DDMLSKKTNGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALE 817
Query: 837 DLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
+L+ DL RAKKGK PL K +DGK KRNL PEALERK+AQTNAKIEKMERD +TKEDLKTV
Sbjct: 818 ELKTDLSRAKKGK-PLSKGADGKPKRNLNPEALERKIAQTNAKIEKMERDKETKEDLKTV 876
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM+
Sbjct: 877 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMN 919
>gi|334683321|dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/943 (64%), Positives = 707/943 (74%), Gaps = 72/943 (7%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTTNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQRHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG+NS+A K + S+K PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGENSSAQKGRIQ-PSAKTPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL-- 207
S ANSK S+ KQ H ++ A ++ + S+ S+D+KPLSAR
Sbjct: 103 TSAGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFG 162
Query: 208 ---KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRF-PKSNAGTSGAKPID 263
KG S + N+ G D+ V + EDS+DE PLS RF KS+ G S +K D
Sbjct: 163 CSSKGKSNHANKEGG----DSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYD 218
Query: 264 SDEKKPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKV 322
SDEKKPLA+KVQ NGS SR++ KS+S+ KRP + S SS KKPK+S +
Sbjct: 219 SDEKKPLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISN 278
Query: 323 KQVTVKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVT 357
KQ VK E KA+DDD ++PISQR+K S SV KS
Sbjct: 279 KQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSA 338
Query: 358 NTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY 417
KA+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGVIFPPPY
Sbjct: 339 PVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVIFPPPY 397
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQ 477
PHGVKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH IQ
Sbjct: 398 KPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQ 457
Query: 478 NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRV 537
NLE CDF PIY+WHQ++KEKKKQM++EEKKALKEEK +QEEKYMWAIVDGVKEKVGNFRV
Sbjct: 458 NLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRV 517
Query: 538 EPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLA 597
EPPGLFRGRGEHPKMGKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA
Sbjct: 518 EPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLA 577
Query: 598 FWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTR 656
+WNDPIN KEFKYVFLAASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D +
Sbjct: 578 YWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMK 637
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYV 716
+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LKFDFLGKDSI+Y
Sbjct: 638 KQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQ 697
Query: 717 NTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
N V+VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITL
Sbjct: 698 NEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITL 757
Query: 777 DGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLK 836
D ML+K T G+VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L+
Sbjct: 758 DDMLSKKTNGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALE 817
Query: 837 DLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
+L+ DL RAKKGK PL K +DGK KRNL PEALERK+AQTNAKIEKMERD +TKEDLKTV
Sbjct: 818 ELKTDLSRAKKGK-PLSKGADGKPKRNLNPEALERKIAQTNAKIEKMERDKETKEDLKTV 876
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM+
Sbjct: 877 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMN 919
>gi|334683319|dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/947 (63%), Positives = 705/947 (74%), Gaps = 66/947 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DDE GP +FKR+ S+QN AN E K+ S
Sbjct: 1 MAVEACTTTNLMEDMEDDE-GPVIFKRSNPTSKQNQANAEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSG 162
Query: 210 NSKNVNQGIGASK--ADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDE 266
S ++ + A+K D+ V + EDS+DE PLS RFP KS+ G S +K DSDE
Sbjct: 163 CS-SMGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDE 221
Query: 267 KKPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQV 325
KKPLA+KVQQNGS S E KS+S+ KR + S SS KKPK+S + KQ
Sbjct: 222 KKPLAAKVQQNGSASPEGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQA 281
Query: 326 TVKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTA 360
VK E KA+DDD H PISQR+K S SV KS
Sbjct: 282 AVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDHAPISQRIKKSPVSVSKSSAPVK 341
Query: 361 KATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPH 420
KA+ VS+S K+NKK+KKVI+ + Y+KS+K+ PGSG+GQK WTTLVHNGV+FPPPY PH
Sbjct: 342 KASTVVSTSLKKVNKKSKKVIRKTAYTKSSKVPPGSGEGQK-WTTLVHNGVMFPPPYKPH 400
Query: 421 GVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLE 480
GVKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH IQNLE
Sbjct: 401 GVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKILGKNHTIQNLE 460
Query: 481 GCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPP 540
CDF PIY+WHQ++KEKKKQM++EEKKALKEE+ +QEEKYMWAIVDGVKEKVGNFRVEPP
Sbjct: 461 DCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQQEEKYMWAIVDGVKEKVGNFRVEPP 520
Query: 541 GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWN 600
GLFRGRGEHPK+GKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA+WN
Sbjct: 521 GLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWN 580
Query: 601 DPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQI 659
DP+N KE KYVFLAASS+LKGQS +EKYEKAR LKDYIH IRAAYTK F ++D ++QI
Sbjct: 581 DPVNIKECKYVFLAASSTLKGQSVKEKYEKARVLKDYIHGIRAAYTKGFTNNKDPMKKQI 640
Query: 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 719
AVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LK DF+GKDSI+Y N V
Sbjct: 641 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNEV 700
Query: 720 EVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
+VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD M
Sbjct: 701 QVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDM 760
Query: 780 LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR 839
L+K T G +A K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 761 LSKETKGGKIAEKVAVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELK 820
Query: 840 VDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALG 899
DL RAKKGKPP KD+DG+ KRNL PE+LERK+AQTNAKIEKMERD KTKEDLK VAL
Sbjct: 821 TDLSRAKKGKPP-SKDADGEPKRNLNPESLERKIAQTNAKIEKMERDKKTKEDLKAVALS 879
Query: 900 TSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TSKI+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAMDVDP FRF
Sbjct: 880 TSKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMDVDPSFRF 926
>gi|334683309|dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/946 (63%), Positives = 699/946 (73%), Gaps = 64/946 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTTNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSG 162
Query: 210 -NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
+SK + D+ V + EDS+DE PLS RFP KS+ G S +K DSDEK
Sbjct: 163 CSSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEK 222
Query: 268 KPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA+KVQQNGS SR+ KS+S+ KR + S SS KKPK+S + KQ
Sbjct: 223 KPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAA 282
Query: 327 VKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTAK 361
VK E KA+DDD + PISQR+K S SV KS K
Sbjct: 283 VKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKK 342
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG 421
A+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGV+FPPPY PHG
Sbjct: 343 ASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVMFPPPYKPHG 401
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEG 481
VKMLYK + + LTPEQEEVATMFA MLDTDYM KP+F+ENF++DW+K+LGKNH IQNLE
Sbjct: 402 VKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGKNHTIQNLED 461
Query: 482 CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPG 541
CDF PIY+WHQ+++EKKKQM++EEKKALK+E+ + EEKYMWAIVDGVKEKVGNFRVEPPG
Sbjct: 462 CDFGPIYEWHQQEREKKKQMTTEEKKALKDERLQLEEKYMWAIVDGVKEKVGNFRVEPPG 521
Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
LFRGRGEHPK+GKLKKRI P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA+WND
Sbjct: 522 LFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWND 581
Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQIA 660
P+N KE KYVFLA SS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D ++QIA
Sbjct: 582 PVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIA 641
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LK DF+GKDSI+Y N V+
Sbjct: 642 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNEVQ 701
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 702 VEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 761
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T G VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 762 SKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKT 821
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DL RAKKGKPP K DG+ KRNL PEALERK+AQTNAKIEKMERD KTKEDLK VAL T
Sbjct: 822 DLSRAKKGKPP-SKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALST 880
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKI+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAMDVDP FRF
Sbjct: 881 SKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMDVDPSFRF 926
>gi|334683315|dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/939 (63%), Positives = 694/939 (73%), Gaps = 64/939 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + P+ + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTPNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSG 162
Query: 210 -NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
+SK + D+ V + EDS+DE PLS RFP KS+ G S +K DSDEK
Sbjct: 163 CSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEK 222
Query: 268 KPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA+KVQ NGS SR+ KS+S+ KR + S SS KKPK+S + KQ
Sbjct: 223 KPLAAKVQPNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAA 282
Query: 327 VKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTAK 361
VK E KA+DDD + PISQR+K S SV KS K
Sbjct: 283 VKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKK 342
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG 421
A+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGVIFPPPY PHG
Sbjct: 343 ASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVIFPPPYKPHG 401
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEG 481
VKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH IQNLE
Sbjct: 402 VKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLED 461
Query: 482 CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPG 541
CDF PIY+WHQ++KEKKKQM++EEKKALKEE+ +QEEKYMW IVDGVKEKVGNFRVEPPG
Sbjct: 462 CDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQQEEKYMWVIVDGVKEKVGNFRVEPPG 521
Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
LFRGRGEHPK+GKLKKRI+P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA+WND
Sbjct: 522 LFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWND 581
Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQIA 660
PIN KE KYVFL ASS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D ++QIA
Sbjct: 582 PINQKERKYVFLGASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIA 641
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LK DF+GKDSI+Y N V+
Sbjct: 642 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNEVQ 701
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+KAI QF++GK+ + DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 702 VEPAVFKAIQQFRSGKEGSADLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 761
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T G VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 762 SKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKT 821
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DL RAKKGKPP K +DG+ KRNL PEALERK+AQTNAKIEKME D KTKEDLK VAL T
Sbjct: 822 DLSRAKKGKPP-SKGADGEPKRNLNPEALERKIAQTNAKIEKMEGDKKTKEDLKAVALST 880
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
SKI+YL PRITVAWCKRHEVPIEK+FNKSLLAKFAWAM+
Sbjct: 881 SKISYLGPRITVAWCKRHEVPIEKMFNKSLLAKFAWAMN 919
>gi|334683323|dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/939 (62%), Positives = 695/939 (74%), Gaps = 64/939 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTTNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSG 162
Query: 210 -NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
+SK + D+ V + EDS+DE PLS RFP KS+ G S +K DSDEK
Sbjct: 163 CSSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEK 222
Query: 268 KPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA+KVQQNGS SR+ KS+S+ KR + S SS KKPK+S + KQ
Sbjct: 223 KPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAA 282
Query: 327 VKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTAK 361
VK E KA+DDD + PISQR+K S SV KS K
Sbjct: 283 VKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKK 342
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG 421
A+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGVIFPPPY PHG
Sbjct: 343 ASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVIFPPPYKPHG 401
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEG 481
VKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH IQNLE
Sbjct: 402 VKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLED 461
Query: 482 CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPG 541
CDF PIY+WHQ+++EKKKQM++EEKKALK+E+ +QEEKYMWAIVDGVKEKVGNFRVEPPG
Sbjct: 462 CDFGPIYEWHQQEREKKKQMTTEEKKALKDERLQQEEKYMWAIVDGVKEKVGNFRVEPPG 521
Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
LFRGRGEHPK+GKLKKRI P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA+WND
Sbjct: 522 LFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWND 581
Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQIA 660
P+N KE KYVFLA SS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D ++QIA
Sbjct: 582 PVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIA 641
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTL+V NVE +PPN LK DF+GKDSI+Y N V+
Sbjct: 642 VATYLIDKLALRAGNEKDDDEADTVGCCTLRVENVEPVPPNILKIDFIGKDSIRYQNEVQ 701
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 702 VEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 761
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T G VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 762 SKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKT 821
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DL RAKKGKPP K DG+ KRNL PEALERK+AQTNAKIEKMERD KTKEDLK VAL T
Sbjct: 822 DLSRAKKGKPP-SKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALST 880
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
SKI+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAM+
Sbjct: 881 SKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMN 919
>gi|187369233|dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/923 (64%), Positives = 688/923 (74%), Gaps = 34/923 (3%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQN-----SN 99
MAVEA P+ D D+D D P VFKRN +AS+Q+ N E ++ SS +GQ+ +
Sbjct: 1 MAVEACPTPNLRDDMDED-DEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDS 59
Query: 100 APKDKTTVSSSKVLPVKSPPPSQ---KATTSSAKASPSKSPMRSP---VKSPVRSPVKSP 153
P + + S K V PSQ ++ +K S KSP+ SP S +SPV S
Sbjct: 60 RPANGESSSGQKGRMVPPSKPSQVKSPLSSPPSKPSQVKSPLSSPKVSTSSAKKSPVSSL 119
Query: 154 VANSKESSPLDDRLKQSPQHNALAVVKKEE---IKDGNGLKSDDNDSEDDKPLSARLKGN 210
ANSK S+ ++K QH + V+K+E+ ++ + + +D DS+D KPLS R +
Sbjct: 120 PANSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSAS 179
Query: 211 SK--NVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
S N NQ +S+ K + EDSDDE PLSSRFP KS G S +K DSD+
Sbjct: 180 SSKGNTNQ----------VSKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDD 229
Query: 268 KPLASKVQQNGSTSRETQ-QKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA K+Q NGS R+ Q K S++ KRP SS S KKPK+S + KQ +
Sbjct: 230 KPLAKKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQAS 289
Query: 327 VKVEKKA--DDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNS 384
VK E KA DDDDH+PISQR+K S S KS + SS K K + +
Sbjct: 290 VKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSK 349
Query: 385 QYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMF 444
S SG+G KKW L HNGVIFPPPY PHG+KMLYKGK V+LTPEQEEVATMF
Sbjct: 350 YSKSSKVPP-SSGEG-KKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMF 407
Query: 445 AVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
AVMLDTDYM KP+F+ENF+ DW+K+LGKNHVIQNLE CDF PIY+WHQ +KEKKKQM++E
Sbjct: 408 AVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTE 467
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKALKEEK KQEEKYMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI+P DI
Sbjct: 468 EKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDI 527
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGKD PIPECP+PGE WKEV+HDNTVTWLAFWNDPINPKEFKYVFLAASS+LKG SD
Sbjct: 528 TINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSD 587
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
+EKYEKAR LKDYI IRAAYTKDF S+D T++QIAVATYLIDKLALRAGNEKDDDEADT
Sbjct: 588 KEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADT 647
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
VGCCTLKV NVE +PPN LKFDFLGKDSI+Y N VEVE V+KAI QF++GK+ + DLFD
Sbjct: 648 VGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSSDLFD 707
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML++ T GDVA K+ VYQ ANKEVA
Sbjct: 708 LLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAEKVVVYQHANKEVA 767
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL-MKDSDGKRKRN 863
IICNHQRTVSK+HSAQM RL EKIE+LK V+++L+ DL R KKGKPPL K++DGK KRN
Sbjct: 768 IICNHQRTVSKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPLKSKNADGKPKRN 827
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
L PE+LE+K+AQTNAKIEKMERD +TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE
Sbjct: 828 LNPESLEKKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 887
Query: 924 KIFNKSLLAKFAWAMDVDPEFRF 946
KIFNKSLLAKF WAMDVDP FRF
Sbjct: 888 KIFNKSLLAKFTWAMDVDPSFRF 910
>gi|334683311|dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
Length = 920
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/939 (62%), Positives = 693/939 (73%), Gaps = 64/939 (6%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 92
MAVEA + + + D +DDE GP +FKR+ AS+QN AN E K+ S
Sbjct: 1 MAVEACTTTNLMEDMEDDE-GPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59
Query: 93 --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV 150
ANG++S+A K + S++ PVKSP S KA+ SSAKASP +
Sbjct: 60 RPANGESSSAQKGRIQ-PSAETPPVKSPLSSPKASNSSAKASP----------------I 102
Query: 151 KSPVANSKESSPLDDRLKQSPQH-NALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
SP ANSK S+ KQ H ++ A ++ + S+ S+D+KPL AR G
Sbjct: 103 TSPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSG 162
Query: 210 -NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEK 267
+SK + D+ V + EDS+DE PLS RFP KS+ G S +K DSDEK
Sbjct: 163 CSSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEK 222
Query: 268 KPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT 326
KPLA+KVQQNGS SR+ KS+S+ KR + S SS KKPK+S + KQ
Sbjct: 223 KPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAA 282
Query: 327 VKVEKKADDDD-------------------------HIPISQRMKNSAPSVKKSVTNTAK 361
VK E KA+DDD + PISQR+K S SV KS K
Sbjct: 283 VKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKK 342
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG 421
A+ VS S K+NKK+KKVIK + Y+KS+K+ PGSG+GQK WTTLVHNGV+F PPY PHG
Sbjct: 343 ASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQK-WTTLVHNGVMFLPPYKPHG 401
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEG 481
VKMLYK + + LTPEQEEVATMFAVMLDTDYM KP+F+ENF++DW+K+LGKNH +QNLE
Sbjct: 402 VKMLYKQQPLTLTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGKNHTVQNLED 461
Query: 482 CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPG 541
CDF PIY+WHQ++KEK+KQM++EEKKALKEE+ +QEEKYM AIVDGVKEKVGNFRVEPPG
Sbjct: 462 CDFGPIYEWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMRAIVDGVKEKVGNFRVEPPG 521
Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
LFRGRGEHPK+GKLKKRI P DITINIGKD PIPECPIPGE WKEV++DNTVTWLA+WND
Sbjct: 522 LFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWND 581
Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV-SRDGTRRQIA 660
P+N KE KYVFLA SS+LKGQSD+EKYEKAR LKDYIH IRAAYTKDF ++D ++QIA
Sbjct: 582 PVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIA 641
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPN LK DF+GKDSI+Y N V+
Sbjct: 642 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNEVQ 701
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+KAI QF++GK+ ++DLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 702 VEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 761
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T G VA K+ VYQ ANKEVAIICNHQRTVSK+HSAQMSRL EKI++LK L++L+
Sbjct: 762 SKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKT 821
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DL RAKKGKPP K DG+ KRNL PEALERK+AQTNAKIEKMERD KTKEDLK VAL T
Sbjct: 822 DLSRAKKGKPP-SKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALST 880
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
SKI+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAM+
Sbjct: 881 SKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMN 919
>gi|225465097|ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
gi|296082698|emb|CBI21703.3| unnamed protein product [Vitis vinifera]
Length = 857
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/808 (71%), Positives = 641/808 (79%), Gaps = 32/808 (3%)
Query: 152 SPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDKPLSARLKGN 210
+P +K S + +K PQ VV + K++ D+DSEDDKPLS RL
Sbjct: 69 APPMPAKGSGRVTGSVKSPPQQVGRGVVVGNSKVEAQNKKAELDSDSEDDKPLSVRL--- 125
Query: 211 SKNVNQGIGAS---KADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEK 267
S + +G G+S K + +D DD++PLSS+F + SDEK
Sbjct: 126 SSGLPKGKGSSNNVGLGRGGVGGVKKEEDDDDDDKIPLSSKFQ-----------LKSDEK 174
Query: 268 KPLASKVQQNGSTSRETQQKSSSV-PVKRPLQKASSS-GASS-AKKPKVSDTSKE-VKVK 323
KPL KV QNG T + + KS +V KRPL +SS G SS KKPK+S S + KV
Sbjct: 175 KPLPLKVNQNGGTDK--RDKSPTVLNKKRPLDGVNSSLGQSSLVKKPKISGQSAQPFKVT 232
Query: 324 QVTVKVEKKADDDDH--IPISQRMKNS-APSVKKSVTNTAKATKSVSSSS--NKINKKTK 378
T K E K +DDD +PISQRMK S A S K V K TK VSS+S + K+K
Sbjct: 233 HATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKVVSSTSFKKTKDIKSK 292
Query: 379 KVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQE 438
K+ KNS+YSKSTK+ P SG+GQK WTTLVHNGVIFPPPY PHGVKMLYKGK V+LTPEQE
Sbjct: 293 KMEKNSKYSKSTKVPPSSGEGQK-WTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQE 351
Query: 439 EVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKK 498
EVATMFAVMLDTDYMQK KF+ENF DWRK+LGKNHVIQ L+ CDF PIY+WHQE+KEKK
Sbjct: 352 EVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKK 411
Query: 499 KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 558
KQMS+EEKK LKEEK K EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 412 KQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 471
Query: 559 IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618
I PSDITINIGK+ IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS
Sbjct: 472 IHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 531
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
LKGQSD+EKYEKARKLK+YI IRA YTKDFVS+D T+RQIAVATYLIDKLALRAGNEKD
Sbjct: 532 LKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKD 591
Query: 679 DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
DDEADTVGCCTLKV NV PPN L+FDFLGKDSI+Y TVEVELPVYKAI QF+ GK
Sbjct: 592 DDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSG 651
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQR 798
+DDLFDKLDT+KLNAHLKELMPGLTAKVFRTYNASITLD MLNK T +GDVA K+ VYQ
Sbjct: 652 SDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGDVAQKVVVYQH 711
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDG 858
ANKEVAIICNHQRT+SK+H+AQM+RLTEKI+++KGVL L+ DL RAKKGKPPL KD+DG
Sbjct: 712 ANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKPPL-KDADG 770
Query: 859 KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
KR RNL PEALERK+AQTNAKIEKMERD TKEDLKTVALGTSKINYLDPRI+VAWCKR
Sbjct: 771 KR-RNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPRISVAWCKRQ 829
Query: 919 EVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
EVPIEK+FNKSLLAKFAWAMDV P+FRF
Sbjct: 830 EVPIEKVFNKSLLAKFAWAMDVPPDFRF 857
>gi|297796405|ref|XP_002866087.1| TOP1alpha [Arabidopsis lyrata subsp. lyrata]
gi|297311922|gb|EFH42346.1| TOP1alpha [Arabidopsis lyrata subsp. lyrata]
Length = 911
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/904 (62%), Positives = 679/904 (75%), Gaps = 65/904 (7%)
Query: 83 PEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPV 142
P V + +S+TA+ N + P D + +S + KSPPP + TS +++ S +
Sbjct: 27 PLVFKRTSNTASTTNRSRPID-NAMRNSVIGSTKSPPPMRSPLTSPNRSASSSARSSM-- 83
Query: 143 KSPVRSPVKSPVANSKESSPL-DDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDK 201
P P S V S SPL DDR + + N L K + K+DD DSEDDK
Sbjct: 84 MKPTTLPSSSSVQRSTVKSPLRDDRSVVAKERNGLG-------KAPSVSKTDDEDSEDDK 136
Query: 202 PLSARLKGNSKNVNQ---GIGASKADAAISEVNVKTDPEDS---------DDEVPLSSRF 249
PLSARLK +SK V + G A+ + N++ P+ S D+ P+SS
Sbjct: 137 PLSARLKMDSKEVIKQPSSSGRGNTQQAVQKSNMR--PQGSSDNTKKKVLDERAPVSSMV 194
Query: 250 -PKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSA 308
K++ GTS +KP+ +++K+PL + + +NG + T+ SS P KRPL+K SSS SS
Sbjct: 195 QTKTSVGTSSSKPVHNEQKRPLVNNINRNGLKPK-TEGVSSQAPAKRPLEKGSSSNQSSV 253
Query: 309 KKPKVSDTSKEVKVKQVT------------------------VKVEKKADDDDHIPISQR 344
K+ K+S+ ++ VKV+Q + + E +DDDDH+PI+ R
Sbjct: 254 KRLKLSEPARPVKVEQGSHNAATQDAKGKNLDASKPLRANKAIVKEDNSDDDDHVPIASR 313
Query: 345 MKNSAPSVKKSVTNTAKATKSVSSSSNK--INKKTKKVIKNSQYSKSTKMLPGSGDGQKK 402
+K+ + S ++AK + S + +S+ I KK K +K+S+YSKS+K L SGDGQ K
Sbjct: 314 IKSDS-----SKFSSAKPSSSKTIASSSRIIAKKPNKWVKDSKYSKSSKSL-PSGDGQTK 367
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W TL HNGVIFPP Y HGVK+LY+GK V+LTPEQEEVATMFAVM +T+Y KPKFRENF
Sbjct: 368 WKTLEHNGVIFPPSYKRHGVKILYQGKPVDLTPEQEEVATMFAVMRETEYYNKPKFRENF 427
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMW 522
WNDWR+LLGKNH+I+NL+ CDF PIY+W+ ++KE KK M++EEK+ LKEEK KQEEKYMW
Sbjct: 428 WNDWRRLLGKNHIIKNLDDCDFTPIYEWYIQEKETKKLMTAEEKRILKEEKLKQEEKYMW 487
Query: 523 AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGE 582
A++DGV+E++GNFRVEPPGLFRGRGEHPKMGKLKKRI+P DITINIGK+ P+PECPIPGE
Sbjct: 488 AVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKEAPVPECPIPGE 547
Query: 583 SWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIR 642
WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+EKYE K+YI SIR
Sbjct: 548 RWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE-----KNYIGSIR 602
Query: 643 AAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK 702
AAYTKDF ++D T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK
Sbjct: 603 AAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK 662
Query: 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGL 762
LKFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKELM GL
Sbjct: 663 LKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELMAGL 722
Query: 763 TAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS 822
TAKVFRTYNASITLD ML+K T DGDV K+ VYQ+ANKEVAIICNHQRTVSK+H AQ+
Sbjct: 723 TAKVFRTYNASITLDLMLSKETRDGDVPEKVVVYQQANKEVAIICNHQRTVSKSHGAQVE 782
Query: 823 RLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
+L KIE+L+ +K+L +DL+RAKKG+ PLM SDGKRKRNL PEALE+K+ QT KIEK
Sbjct: 783 KLAVKIEELREQIKELNIDLNRAKKGRTPLM-GSDGKRKRNLTPEALEKKIMQTQGKIEK 841
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 942
MERDM+TKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKFAWAMDVDP
Sbjct: 842 MERDMQTKEDMKTVALGTSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDP 901
Query: 943 EFRF 946
EFRF
Sbjct: 902 EFRF 905
>gi|15240493|ref|NP_200342.1| DNA topoisomerase 1 beta [Arabidopsis thaliana]
gi|9758163|dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana]
gi|110741973|dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana]
gi|332009232|gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana]
Length = 917
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/886 (63%), Positives = 662/886 (74%), Gaps = 74/886 (8%)
Query: 118 PPPSQKATTSSAKASPSKSP-MRSPVKSPVRS--------------PVKSPVANSKESSP 162
P P A +SA S SP MRSP+ SP RS P S V S SP
Sbjct: 43 PSPINNAMRNSAIGSTKSSPPMRSPLTSPNRSASSSTRSSMMKPALPSSSSVQRSTLKSP 102
Query: 163 L-DDRLKQSPQHNALAVVKKEEIKDGNG-----LKSDDNDSEDDKPLSARLKGNSKNVNQ 216
L DDR +VV KE ++G G KSDD DSEDDKPLSARLK +SK V +
Sbjct: 103 LRDDR----------SVVAKE--RNGFGKAPSVSKSDDEDSEDDKPLSARLKLDSKEVTK 150
Query: 217 ---GIGASKADAAISEVNVK-------TDPEDSDDEVPLSSRF-PKSNAGTSGAKPIDSD 265
G A+ + N++ T + D+ P+SS K++ GTS +KP+ +
Sbjct: 151 QPSSSGRGSTQQAVQKSNMRPQGLSDYTKKKVLDERAPMSSTVQTKTSVGTSSSKPVHIE 210
Query: 266 EKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQ- 324
+K+PL + + +NG + T+ SS P KRPL+K SSS SS K+PK+S+ ++ VKV+Q
Sbjct: 211 QKRPLVNNIDRNGLKPK-TEGHSSQAPAKRPLEKGSSSNQSSVKRPKLSEPARPVKVEQG 269
Query: 325 ------------------------VTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTA 360
TVK E +D DDH+PI+ RMK+ + + K S +
Sbjct: 270 SHISATQDAKGKNLDASKPLRANQATVK-EDNSDGDDHVPIASRMKSDSSNNKSSSAKPS 328
Query: 361 KATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPH 420
+ SSS K K V + S + SGDGQKKW TL HNGVIFPPPY H
Sbjct: 329 SSKMIASSSRTIAQKPNKWVKDSKYSKSSKSLP--SGDGQKKWKTLQHNGVIFPPPYKRH 386
Query: 421 GVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLE 480
GVK+L++GK V+LTPEQEEVATMFAVM +T+Y +KPKFRENFWNDWRKLLGKNH+I++L+
Sbjct: 387 GVKILFQGKPVDLTPEQEEVATMFAVMRETEYYKKPKFRENFWNDWRKLLGKNHMIKSLD 446
Query: 481 GCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPP 540
CDF PIY+W+ ++KE KKQM++EEK+ +KEEK KQEEKYMWA++DGV+E++GNFRVEPP
Sbjct: 447 DCDFTPIYEWYMQEKETKKQMTAEEKRIVKEEKLKQEEKYMWAVLDGVRERIGNFRVEPP 506
Query: 541 GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWN 600
GLFRGRGEHPKMGKLKKRI+P DITINIGK+ PIPECPIPGE WKEVKHDNTVTWLAFW+
Sbjct: 507 GLFRGRGEHPKMGKLKKRIRPCDITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWS 566
Query: 601 DPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIA 660
DPINPKEFKYVFLAASSSLKGQSD+EKYEKARKL ++I SIRAAYTKDF ++D T+RQIA
Sbjct: 567 DPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIA 626
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE
Sbjct: 627 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 686
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE VYKAIGQFQ GK + DDLFD+LDT+KLN HLKELM GLTAKVFRTYNASITLD ML
Sbjct: 687 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLML 746
Query: 781 NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+K T DGDV K+ VYQ+ANKEVAIICNHQRTVSK+H AQ+ +L KIE+L+ +K+L +
Sbjct: 747 SKETRDGDVPEKVVVYQQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKELNI 806
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
DLDRAKKG+ PLM SDGKRKRNL PEALE+K+ QT KIEKMERDM+TKED+KTVALGT
Sbjct: 807 DLDRAKKGRTPLM-GSDGKRKRNLTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVALGT 865
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKFAWAMDVDPEFRF
Sbjct: 866 SKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPEFRF 911
>gi|297796403|ref|XP_002866086.1| TOP1BETA [Arabidopsis lyrata subsp. lyrata]
gi|297311921|gb|EFH42345.1| TOP1BETA [Arabidopsis lyrata subsp. lyrata]
Length = 922
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/957 (60%), Positives = 686/957 (71%), Gaps = 95/957 (9%)
Query: 45 MAVEASSKPSRVYDF---DDDEDGPAVFKR-NTAASRQNLANPEVKRPSSSTANGQNSNA 100
M E SKP V D D D+D VFKR +T AS N S +N Q S A
Sbjct: 1 MGTETVSKP--VMDNGCEDSDDDKAVVFKRRSTVASNSN----------QSKSNPQRSKA 48
Query: 101 PKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKES 160
V ++K P++SP S TT S + S KS + P S SP KSP+ N S
Sbjct: 49 ------VPTTKESPMRSPVTSPNGTTPSNRTSTVKSSV--PSSSAKASPAKSPLRNDTLS 100
Query: 161 SPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGA 220
+ D +S H KD + K + DSEDD+PLS+ L GNS N+G +
Sbjct: 101 TVKD----RSQLH-----------KDQSKCKIEHEDSEDDRPLSSILSGNSNRQNKGPTS 145
Query: 221 SK------------ADAAISEVNVKTDPEDSDDEVPLSSRFPKS-NAGTSGAKPIDSDEK 267
S+ D + N + ++SDDE P+S F K ++G SG K I +DE
Sbjct: 146 SRQVSSPQPEKKNNGDRPLDRAN-RIIKDESDDETPISLMFRKKIDSGMSGGKQISNDEN 204
Query: 268 KPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTV 327
KPLA K+ QNGS + + + + V KRP++K SS+ SS KK K+S + VK+KQ +V
Sbjct: 205 KPLAKKLHQNGS-ALKNEVPNCKVLGKRPVEKNSSADQSSLKKVKLSASPTSVKMKQDSV 263
Query: 328 KVEKKADDDDHI-------------------------PISQRMKNSAP----------SV 352
K K++DD + PIS+R K+ + +V
Sbjct: 264 K--KESDDKGRVLGSPKPLKAKKLSTREDGTDDDDDVPISKRFKSDSSNSKTSSAKPKAV 321
Query: 353 KKSVTNTA---KATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHN 409
K++ T++A K T VS S NK +KKV K+S+YS S+K P SGDGQKKWTTLVHN
Sbjct: 322 KQNSTSSAAKPKVTNVVSPRSRTTNKNSKKVTKDSKYSASSKSSPSSGDGQKKWTTLVHN 381
Query: 410 GVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKL 469
GVIFPPPY PHG+K+LYKGK V+LT EQEEVATMFAVM +TDY KP+FRENFWNDWR L
Sbjct: 382 GVIFPPPYKPHGIKILYKGKPVDLTTEQEEVATMFAVMRETDYYNKPQFRENFWNDWRAL 441
Query: 470 LGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVK 529
LG+ HVIQ L+ CDF PIY+WH E+KEKKKQMS+EEKKALKEEK KQEEKYMWA+VDGVK
Sbjct: 442 LGRKHVIQKLDDCDFTPIYEWHLEEKEKKKQMSTEEKKALKEEKLKQEEKYMWAVVDGVK 501
Query: 530 EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKH 589
EK+GNFRVEPPGLFRGRGEHPKMGKLKKRI+P +IT+NIGK PIPECPI GE WKEVKH
Sbjct: 502 EKIGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCEITLNIGKGAPIPECPIAGERWKEVKH 561
Query: 590 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDF 649
DNTVTWLAFW DPIN KEFKYVFLA SS++KG SD+EKYEKAR L D+I +IR YTK+F
Sbjct: 562 DNTVTWLAFWVDPINQKEFKYVFLAPSSAMKGLSDKEKYEKARNLTDHIDNIRTTYTKNF 621
Query: 650 VSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLG 709
++D T +QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLG
Sbjct: 622 TAKDVTTKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLG 681
Query: 710 KDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRT 769
KDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRT
Sbjct: 682 KDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRT 741
Query: 770 YNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
YNASITLD ML++ T DGD+ KI VYQ+ANKEVAIICNHQRTVSK+H AQ+ +LT +IE
Sbjct: 742 YNASITLDEMLSQETKDGDLNQKIVVYQKANKEVAIICNHQRTVSKSHGAQIEKLTARIE 801
Query: 830 DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKT 889
+LK LK+L+ +LD AKKGKPPL + SDGK+ R+L P A E+K+AQ +AKIEKMERDM T
Sbjct: 802 ELKEGLKELKTNLDWAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHT 860
Query: 890 KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KFAWAMDV+P++RF
Sbjct: 861 KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEPDYRF 917
>gi|225446979|ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 883
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/778 (69%), Positives = 629/778 (80%), Gaps = 23/778 (2%)
Query: 189 GLKSDDNDSEDDKPLSARLKGNSKNV--------NQGI---GASKADAAISEVNVKTDPE 237
G+K +DSED+ PL +L+ S+ ++G+ +S+ + ++VN K +
Sbjct: 109 GVKESSDDSEDEIPLLLKLQLKSRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSD 168
Query: 238 DSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQ-KSSSVPVKR 295
DS+DE+PLSS+F K+ G S K + DEKKPL S ++ NG + ++ ++ KS KR
Sbjct: 169 DSEDEIPLSSKFRLKTGMGASLDKLDNFDEKKPLTSTLKPNGISKKDDERVKSPKGQNKR 228
Query: 296 PLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDD-------DHIPISQRMKNS 348
PL +A++S SS+KKPK+ D S + KVKQV+VK E+K DDD ++ P +R+K S
Sbjct: 229 PLGQANTSHHSSSKKPKLLDGSVKGKVKQVSVKAEQKDDDDDDNDDDDEYTPTVKRLKKS 288
Query: 349 APSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVH 408
S K + T K S + K KK+KK+ K+S+YSKSTK+ P SG+GQK WTTL H
Sbjct: 289 VSSDNKKASKT-KVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQK-WTTLEH 346
Query: 409 NGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRK 468
NGVIFPPPY PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY KP+F ENF NDWR
Sbjct: 347 NGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRV 406
Query: 469 LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGV 528
LGKNHVI+ E CDF PIY+WH+++KEKKKQM++EEKKALKEEK KQE+KYMWA+VDGV
Sbjct: 407 RLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGV 466
Query: 529 KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK 588
KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI PSDITINIGK+ P+PECPIPGE WKEV+
Sbjct: 467 KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVR 526
Query: 589 HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKD 648
HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+EKYEKAR LKDYI +IRA YTKD
Sbjct: 527 HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKD 586
Query: 649 FVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFL 708
F ++D +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV +PPNKL+FDFL
Sbjct: 587 FTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFL 646
Query: 709 GKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
GKDSI+Y NTVEVELPVYKAIGQF+TGK DDLFDKLDT+KLNAHLKELMPGLTAKVFR
Sbjct: 647 GKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFR 706
Query: 769 TYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKI 828
TYNASITLD MLN+ GD KI +YQ ANKEVAIICNHQR+VSK+H QMSRL+EK+
Sbjct: 707 TYNASITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKM 766
Query: 829 EDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMK 888
+L+GVL +L+ DL RAKKGKPPL KDSDGK K+N+ PE LERK+AQTN KIEKMERDMK
Sbjct: 767 RELQGVLDELKTDLARAKKGKPPL-KDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMK 825
Query: 889 TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TKEDLKTVALGTSKINYLDPRI+VAWCKR EVPIEKIFNKSLLAKFAWAMDVDP FRF
Sbjct: 826 TKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 883
>gi|15240492|ref|NP_200341.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|267146|sp|P30181.1|TOP1_ARATH RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|16558|emb|CAA40763.1| topoisomerase I [Arabidopsis thaliana]
gi|9758162|dbj|BAB08547.1| DNA topoisomerase I [Arabidopsis thaliana]
gi|332009229|gb|AED96612.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|445137|prf||1908437A topoisomerase I
Length = 916
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/873 (64%), Positives = 653/873 (74%), Gaps = 60/873 (6%)
Query: 129 AKASPSK--SPMRSPVKSP---VRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEE 183
+KA P+ SPMRSPV SP S S V +S SS +SP N + K+
Sbjct: 46 SKAVPTTKVSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSPLRNDMPSTVKDR 105
Query: 184 I---KDGNGLKSDDNDSEDDKPLSARLKGN-----SKNVN--QGIGASKADAAISEVNVK 233
KD + K + DSEDD+PLS+ L GN S+ V+ Q + D + + +
Sbjct: 106 SQLQKDQSECKIEHEDSEDDRPLSSILSGNKGPTSSRQVSSPQPEKKNNGDRPLDRAS-R 164
Query: 234 TDPEDSDDEVPLSSRFPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVP 292
++SDDE P+SS F K ++G SG + +DEKKPL K+ QNGST + + + V
Sbjct: 165 IIKDESDDETPISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTVK-NEVPNGKVL 223
Query: 293 VKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHI------------- 339
KRPL+K SS+ SS KK K+S + VK+KQ +VK K+ DD +
Sbjct: 224 GKRPLEKNSSADQSSLKKAKISASPTSVKMKQDSVK--KEIDDKGRVLVSPKMKAKQLST 281
Query: 340 -------------PISQRMKNSAP----------SVKKSVTNTA---KATKSVSSSSNKI 373
PIS+R K+ + +VK + T++A KA VS S +
Sbjct: 282 REDGTDDDDDDDVPISKRFKSDSSNSNTSSAKPKAVKLNSTSSAAKPKARNVVSPRSRAM 341
Query: 374 NKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
K TKKV K+S+YS S+K P SGDGQKKWTTLVHNGVIFPPPY PHG+K+LYKGK V+L
Sbjct: 342 TKNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDL 401
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
T EQEEVATMFAVM +TDY KP+FRENFWNDWR+LLGK HVIQ L+ CDF PIY+WH E
Sbjct: 402 TIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLE 461
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
+KEKKKQMS+EEKKALKEEK KQEEKYMWA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMG
Sbjct: 462 EKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMG 521
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
KLKKRI P +IT+NIGK PIPECPI GE WKEVKHDNTVTWLAFW DPINPKEFKYVFL
Sbjct: 522 KLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFL 581
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
A SSLKG SD+EKYEKAR L D+I +IR YTK+F ++D RQIAVATYLIDKLALRA
Sbjct: 582 GAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRA 641
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ
Sbjct: 642 GNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQ 701
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI
Sbjct: 702 AGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKI 761
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL
Sbjct: 762 VVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL- 820
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
+ SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVA
Sbjct: 821 EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVA 880
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKRHEVPIEKIF KSLL KFAWAMDV+PE+RF
Sbjct: 881 WCKRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 913
>gi|334188419|ref|NP_001190543.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|332009230|gb|AED96613.1| DNA topoisomerase 1 [Arabidopsis thaliana]
Length = 933
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/870 (64%), Positives = 650/870 (74%), Gaps = 60/870 (6%)
Query: 129 AKASPSK--SPMRSPVKSP---VRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEE 183
+KA P+ SPMRSPV SP S S V +S SS +SP N + K+
Sbjct: 46 SKAVPTTKVSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSPLRNDMPSTVKDR 105
Query: 184 I---KDGNGLKSDDNDSEDDKPLSARLKGN-----SKNVN--QGIGASKADAAISEVNVK 233
KD + K + DSEDD+PLS+ L GN S+ V+ Q + D + + +
Sbjct: 106 SQLQKDQSECKIEHEDSEDDRPLSSILSGNKGPTSSRQVSSPQPEKKNNGDRPLDRAS-R 164
Query: 234 TDPEDSDDEVPLSSRFPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVP 292
++SDDE P+SS F K ++G SG + +DEKKPL K+ QNGST + + + V
Sbjct: 165 IIKDESDDETPISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTVK-NEVPNGKVL 223
Query: 293 VKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHI------------- 339
KRPL+K SS+ SS KK K+S + VK+KQ +VK K+ DD +
Sbjct: 224 GKRPLEKNSSADQSSLKKAKISASPTSVKMKQDSVK--KEIDDKGRVLVSPKMKAKQLST 281
Query: 340 -------------PISQRMKNSAP----------SVKKSVTNTA---KATKSVSSSSNKI 373
PIS+R K+ + +VK + T++A KA VS S +
Sbjct: 282 REDGTDDDDDDDVPISKRFKSDSSNSNTSSAKPKAVKLNSTSSAAKPKARNVVSPRSRAM 341
Query: 374 NKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
K TKKV K+S+YS S+K P SGDGQKKWTTLVHNGVIFPPPY PHG+K+LYKGK V+L
Sbjct: 342 TKNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDL 401
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
T EQEEVATMFAVM +TDY KP+FRENFWNDWR+LLGK HVIQ L+ CDF PIY+WH E
Sbjct: 402 TIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLE 461
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
+KEKKKQMS+EEKKALKEEK KQEEKYMWA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMG
Sbjct: 462 EKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMG 521
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
KLKKRI P +IT+NIGK PIPECPI GE WKEVKHDNTVTWLAFW DPINPKEFKYVFL
Sbjct: 522 KLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFL 581
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
A SSLKG SD+EKYEKAR L D+I +IR YTK+F ++D RQIAVATYLIDKLALRA
Sbjct: 582 GAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRA 641
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ
Sbjct: 642 GNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQ 701
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI
Sbjct: 702 AGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKI 761
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL
Sbjct: 762 VVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL- 820
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
+ SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVA
Sbjct: 821 EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVA 880
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPE 943
WCKRHEVPIEKIF KSLL KFAWAMDV+PE
Sbjct: 881 WCKRHEVPIEKIFTKSLLEKFAWAMDVEPE 910
>gi|5326994|emb|CAB46363.1| DNA topoisomerase I [Daucus carota]
Length = 909
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/935 (60%), Positives = 673/935 (71%), Gaps = 79/935 (8%)
Query: 60 DDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTA--------------NGQNSNAPKDKT 105
D ++D P +FKR+ + +QN A P ++ S+ A NG +SN K KT
Sbjct: 6 DSEDDKPLIFKRSNTSVKQNQAKPRCQKIISAEAVWQVGRLISDVRSTNGHDSNVQKGKT 65
Query: 106 TVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPV---KSPVANSKESSP 162
S K SP SP+ SP S S K PVA++K S+
Sbjct: 66 V--------------------PSTKGSPVVSPLASPKASVSSSKASQVKPPVASTKASTS 105
Query: 163 LDDRLKQSPQHNALAVVKKEEIKDGNGLKSDD-----NDSEDDKPLSARL-----KGNSK 212
D+ +Q+ Q N A+VK E +G+ ++ DS+DDKPL++RL KG+
Sbjct: 106 GADQSRQNSQQNRTAIVKAER---PSGIPKEEPDSGSEDSDDDKPLNSRLPVGGSKGSIS 162
Query: 213 NVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRF-PKSNAGTSGAKPIDSDEKKPLA 271
VN+ +S A ++ +K EDS+D++PLS +F KSNAG S + DSDE KP A
Sbjct: 163 EVNRRPSSSGPAAFEKDLGIKE--EDSEDDIPLSHKFKQKSNAGES-SNAYDSDEGKPFA 219
Query: 272 SKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVE- 330
SK +QNG+ ++ + S+ KRP + SG S KK V +V+ ++TVK E
Sbjct: 220 SKPRQNGTNVKDNVKNPSTAINKRPSAEVKCSGQSPVKKATVQLHLHQVR--KLTVKAEP 277
Query: 331 -KKADD--DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYS 387
K+ADD DD+ ISQR+K A + K+ ++ K+ SVSSS NK+NK +KK+ K++Q+S
Sbjct: 278 KKEADDSDDDNATISQRVKKPATPISKA-SDKKKSAVSVSSSLNKVNKNSKKITKSTQFS 336
Query: 388 KSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM 447
KS K+ PGSG+GQK WTTLVHNGVIFPPPY PHGVKMLYK V+LT QEEV + +
Sbjct: 337 KSLKVPPGSGEGQK-WTTLVHNGVIFPPPYKPHGVKMLYKESPVDLTLNQEEVHMIAVMQ 395
Query: 448 LDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKK 507
+ T+Y+ KP FREN NDW+ +LG+NH+I+NL+ CDF PIY+W + +KEKKKQMS+EEKK
Sbjct: 396 ILTEYLTKPVFRENVMNDWKIILGRNHIIKNLDDCDFTPIYEWFRLKKEKKKQMSAEEKK 455
Query: 508 ALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
A+KEEK KQEEKYMWA+VDGVKE VGNFRVEPPGLFRGR PKMGKLKKRI PSDITIN
Sbjct: 456 AVKEEKLKQEEKYMWAVVDGVKENVGNFRVEPPGLFRGRESIPKMGKLKKRISPSDITIN 515
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
IGKD PIPECPIPGESWKEV+HDNTVTWLA+WNDPIN KEFKYVFLAASSSLKGQSD+EK
Sbjct: 516 IGKDAPIPECPIPGESWKEVRHDNTVTWLAYWNDPINGKEFKYVFLAASSSLKGQSDKEK 575
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI----------------AVATYLIDKLAL 671
YEKARKLK YI IR AYTKDF S+D T+RQI AVATYLIDKLAL
Sbjct: 576 YEKARKLKGYIEGIRTAYTKDFSSKDVTKRQIAVATYLIDKLALRAGNAVATYLIDKLAL 635
Query: 672 RAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
RAGNEKDDDEADTVGCCTLKV NVE LK DFL KDSI+Y VEVE+PV+KAI Q
Sbjct: 636 RAGNEKDDDEADTVGCCTLKVENVEPRNNPLLKLDFLPKDSIRYQKRVEVEIPVFKAIQQ 695
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV 791
F++GKK +D+LFDKLDT KLNAHLKELMPGL+AKVFRTYNASITLD MLNK T GDV+
Sbjct: 696 FRSGKKGSDNLFDKLDTCKLNAHLKELMPGLSAKVFRTYNASITLDEMLNKETKGGDVSQ 755
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
K+ VYQ ANKEVAIICNHQR+VSK+HS QM RL EKI LK +++L+ DL RAKKGKPP
Sbjct: 756 KVAVYQHANKEVAIICNHQRSVSKSHSTQMMRLDEKINKLKNFIEELKTDLSRAKKGKPP 815
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
L K SDGK KRN+ PEA+E+K+AQTN KIEKMERD +TKEDLKTVALGTSKINYLDPRIT
Sbjct: 816 L-KGSDGKTKRNMNPEAIEKKIAQTNVKIEKMERDKETKEDLKTVALGTSKINYLDPRIT 874
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VAWCKR+EVPIEK+FNKSLLAKFAWAMDV+P FRF
Sbjct: 875 VAWCKRYEVPIEKMFNKSLLAKFAWAMDVEPSFRF 909
>gi|242078207|ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
gi|241940222|gb|EES13367.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
Length = 921
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/758 (65%), Positives = 583/758 (76%), Gaps = 46/758 (6%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
D DS+DDKPL++RL N+ K+ +SE DS+DE PL++RF K
Sbjct: 205 DEDSDDDKPLASRLPNNA--------CPKSGGNVSE--------DSEDEKPLAARFSKV- 247
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKV 313
AG+ K S + G S Q+S KRPL ++ + + + KK K
Sbjct: 248 AGSGNLKTASSSK-----------GLNSDTNGQRSLG---KRPLDNSNQT-SLAIKKAKP 292
Query: 314 SDTSKEVKVKQVTVKVEKKADDDDHIPISQRMK-----NSAPSVKKSVTNTAKATKSVSS 368
S+ S VK+ E K DD+D+ P++QR+K P K V + + K +
Sbjct: 293 SNVSASASVKR-----EIKTDDNDNTPLAQRLKMGESSKGKPPAKSIVKKSPASAKDIKK 347
Query: 369 SSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKG 428
K K +KNSQ+SK+ ++ PGSG+G KKWTTL HNGVIFPPPY PHGVKMLY G
Sbjct: 348 LKGKGKLKKN--MKNSQFSKTMRVPPGSGEG-KKWTTLEHNGVIFPPPYKPHGVKMLYNG 404
Query: 429 KEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIY 488
+ V+LTPEQEEVATMFAVM DTDY KP F +NF+ DWRK+LGKNH+I+ E CDF PIY
Sbjct: 405 QPVDLTPEQEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNHIIKKFELCDFTPIY 464
Query: 489 DWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 548
+WH +KEKKKQM++EEKKAL+EEK KQEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGE
Sbjct: 465 EWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGE 524
Query: 549 HPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEF 608
HPKMGKLK+RIQPSDITINIGK P+PECPIPGESWKE+KHDNTVTWLAFWNDPI+ K+F
Sbjct: 525 HPKMGKLKRRIQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVTWLAFWNDPISQKDF 584
Query: 609 KYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDK 668
KYVFLAASSSLKGQSD+EKYEK+RKLK +I IR YTKDF ++D TRRQIAVATYLIDK
Sbjct: 585 KYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDK 644
Query: 669 LALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKA 728
LALRAGNEKDDDEADTVGCCTLKV NV C+PPNK++FDFLGKDSI+Y NTVEVE VYKA
Sbjct: 645 LALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNKIQFDFLGKDSIRYFNTVEVEELVYKA 704
Query: 729 IGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD 788
I F+ GKK + LFDK+DT +LNAHLK+LMPGLTAKVFRTYNASITLDG+L++ T DG
Sbjct: 705 IEGFRAGKKPGEGLFDKIDTTRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGT 764
Query: 789 VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG 848
+ KI VYQRANKEVAIICNHQR+VSK+H +QM +L EKI++LK +++L+ DL +AKKG
Sbjct: 765 LLEKIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEKIDELKSQMEELKADLSKAKKG 824
Query: 849 KPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDP 908
K PL D +GK+KRNLAPEA+E+K+A KI+KME D K KEDLKTVALGTSKINYLDP
Sbjct: 825 K-PLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKEDLKTVALGTSKINYLDP 883
Query: 909 RITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
RITVAWCKRHEVPIEKIFNKSL+AKF WAMDVDP+FRF
Sbjct: 884 RITVAWCKRHEVPIEKIFNKSLIAKFGWAMDVDPDFRF 921
>gi|256355115|ref|NP_001157806.1| topoisomerase I [Zea mays]
gi|240065169|gb|ACS44671.1| DNA topoisomerase I [Zea mays]
Length = 904
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/757 (66%), Positives = 582/757 (76%), Gaps = 45/757 (5%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
D DS+DDKPL++RL N+ K+ +SE DS+DE PL++RF S
Sbjct: 189 DEDSDDDKPLASRLPSNA--------GPKSGGDVSE--------DSEDEKPLAARF--SK 230
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKV 313
SG I S K G TS Q+S KRPL +S+ +S+ KK K
Sbjct: 231 VAGSGNPKIASSSK----------GLTSDTNGQQSLG---KRPLD-SSNQTSSALKKAKP 276
Query: 314 SDTSKEVKVKQVTVKVEKKADDDDHIPISQRMK----NSAPSVKKSVTNTAKATKSVSSS 369
S+ S + V ++ DD+ P++QR+K + S KSV + +
Sbjct: 277 SNVS-------ASAIVRREIKTDDNTPLAQRLKMGESSKGKSSAKSVFKKSPVSVKKDIK 329
Query: 370 SNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGK 429
K K KK +KNSQ+SK K+ PGSG G KKWTTL HNGVIFPPPY PHGVKMLY GK
Sbjct: 330 KMKGKGKLKKNMKNSQFSKIMKVPPGSGGG-KKWTTLEHNGVIFPPPYKPHGVKMLYNGK 388
Query: 430 EVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYD 489
V+LTPEQEEVATMFAVM DTDY KP F +NF+ DWRK+LGKNH+I+N E CDF PIY+
Sbjct: 389 PVDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 448
Query: 490 WHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 549
WH +KE+KKQM++EEKK L+E+ KQEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEH
Sbjct: 449 WHLREKERKKQMTTEEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEH 508
Query: 550 PKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFK 609
PKMGKLK+RI PSDITINIGK P+PECPIPGESWKEVKHDNTVTWLAFWNDPINPK+FK
Sbjct: 509 PKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFK 568
Query: 610 YVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKL 669
YVFLAASSSLKGQSD+EKYEK+RKLK +I IR YTKDF ++D TRRQIAVATYLIDKL
Sbjct: 569 YVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKL 628
Query: 670 ALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAI 729
ALRAGNEKDDDEADTVGCCTLKV NV C+PPN+++FDFLGKDSI+Y NTVEVE VYKAI
Sbjct: 629 ALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAI 688
Query: 730 GQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV 789
F+ GKK DLFDK+DT++LNAHLK+LMPGLTAKVFRTYNASITLDG+L++ T DG V
Sbjct: 689 EGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTV 748
Query: 790 AVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK 849
KI VYQRANKEVAIICN QR+VSK+H +QM+R+ EKI++LK +++L+ DL++AKKGK
Sbjct: 749 LEKIAVYQRANKEVAIICNQQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGK 808
Query: 850 PPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPR 909
PL DS+GK KRNLAPEA+++K+A KIEKME D + KEDLKTVALGTSKINYLDPR
Sbjct: 809 -PLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPR 867
Query: 910 ITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ITVAWCKRHEVPIEKIFNKSLLAKF WAMDVDPEFRF
Sbjct: 868 ITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 904
>gi|115474837|ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I [Oryza sativa Japonica Group]
gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa Japonica Group]
gi|222639933|gb|EEE68065.1| hypothetical protein OsJ_26075 [Oryza sativa Japonica Group]
Length = 916
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/933 (58%), Positives = 658/933 (70%), Gaps = 70/933 (7%)
Query: 59 FD-DDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNA-----PKDKTTVSSSKV 112
FD DDE+GP FKR++ + + RP+ + G + NA PK +
Sbjct: 9 FDNDDEEGPISFKRSSTSVKN--------RPTPTKQEGSSGNAGPIRSPKAVASNQQKNG 60
Query: 113 LPVKSPPPSQKATTSSAKASP--SKSPMRSPVKSPVRSPVKSPVANSKESSPL--DDRLK 168
L S P Q+ +SS P S P S S S + V SK P D
Sbjct: 61 LTGVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNS---NSVDKSKLKRPFVEDKSDD 117
Query: 169 QSPQHNALAVVKKEEIKD------GNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASK 222
H + + +K E ++ G+G NDS+DDKPLS LK NS A+K
Sbjct: 118 SEDDHKPIGLRRKVEDRNLKKPAVGSGTA---NDSDDDKPLS--LKINSTKTPSS-SANK 171
Query: 223 ADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAK-PIDSDEKKPLA---SKVQQNG 278
A + ++ +DS+D+ PL+SR P + A G DS+++KPLA SKV N
Sbjct: 172 AIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNA 231
Query: 279 STSRETQQ---------------------KSSSVPVKRPLQKASSSGASSAKKPKVSDTS 317
S S + + +S +KRP+ + + +S+ KK + SD S
Sbjct: 232 SASISSSKDKVLSASIKASSSSKMSNNDASTSRNSIKRPIDNNNQT-SSALKKARPSDVS 290
Query: 318 KEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKK----SVTNTAKATKSVSSSSNKI 373
VK+ E KADD+D++P+SQR+K S K ++ + ++ + K+
Sbjct: 291 ASASVKR-----EPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKM 345
Query: 374 NKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
KTKK +KNSQ+SK+ K+ PGSG GQK WTTLVH+GVIFPPPY PHGVKMLY G+ V+L
Sbjct: 346 KMKTKKTMKNSQFSKTMKVPPGSGGGQK-WTTLVHSGVIFPPPYKPHGVKMLYNGQPVDL 404
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
TPEQEEVATMFAVM DTDY K F +NF+ DWRK+LGKNHVI+ E CDF PIY+WH
Sbjct: 405 TPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLR 464
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
+KEKKKQM+SEEKKALKEEK KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG
Sbjct: 465 EKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 524
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
KLK+RI+PSDITINIGK PIPECPIPGESWKEVKHDNTVTWLAFWNDPI+ K+FKYVFL
Sbjct: 525 KLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFL 584
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
AASS+LKGQSD+EKYEK+RKLK ++H IR YTKDF S+D T++QIAVATYLIDKLALRA
Sbjct: 585 AASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRA 644
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEKD+DEA+TVGCCTLKV NV C+PPNKL+FDFLGKDSI+Y NTVEVEL VYKAI +F+
Sbjct: 645 GNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFR 704
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
GKK DLFDKLDT +LNAHLK+LMPGLTAKVFRTYNASITLD +L+K T DG + KI
Sbjct: 705 AGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKI 764
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
VYQRANKEVAIICNHQR+VSK+H +QM+RL EKI++LK +L+ DL + +KGK L
Sbjct: 765 AVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGK-NLG 823
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
D DGK KRNLAPEA E+K++Q KIEKME D K KEDLKTVALGTSKINYLDPRITVA
Sbjct: 824 NDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVA 883
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKRHEVPIEKIFNKSL+AKF+WAMDVDP+FRF
Sbjct: 884 WCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916
>gi|125560180|gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
Length = 916
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/933 (58%), Positives = 658/933 (70%), Gaps = 70/933 (7%)
Query: 59 FD-DDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNA-----PKDKTTVSSSKV 112
FD DDE+GP FKR++ + + RP+ + G + NA PK +
Sbjct: 9 FDNDDEEGPISFKRSSTSVKN--------RPTPTKQEGSSGNAGPIRSPKAVASNQQKNG 60
Query: 113 LPVKSPPPSQKATTSSAKASP--SKSPMRSPVKSPVRSPVKSPVANSKESSPL--DDRLK 168
L S P Q+ +SS P S P S S S + V SK P D
Sbjct: 61 LTGVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNS---NSVDKSKLKRPFVEDKSDD 117
Query: 169 QSPQHNALAVVKKEEIKD------GNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASK 222
H + + +K E ++ G+G NDS+DDKPLS LK NS A+K
Sbjct: 118 SEDDHKPIGLRRKVEDRNLKKPAVGSGTA---NDSDDDKPLS--LKINSTKTPSS-SANK 171
Query: 223 ADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAK-PIDSDEKKPLA---SKVQQNG 278
A + ++ +DS+D+ PL+SR P + A G DS+++KPLA SKV N
Sbjct: 172 AIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNA 231
Query: 279 STSRETQQ---------------------KSSSVPVKRPLQKASSSGASSAKKPKVSDTS 317
S S + + +S +KRP+ + + +S+ KK + SD S
Sbjct: 232 SASISSSKDKVLSASIKASSSSKMSNNDASTSRNSIKRPIDNNNQT-SSALKKARPSDVS 290
Query: 318 KEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKK----SVTNTAKATKSVSSSSNKI 373
VK+ E KADD+D++P+SQR+K S K ++ + ++ + K+
Sbjct: 291 ASASVKR-----EPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKM 345
Query: 374 NKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
KTKK +KNSQ+SK+ K+ PGSG GQK WTTLVH+GVIFPPPY PHGVK+LY G+ V+L
Sbjct: 346 KLKTKKTMKNSQFSKTMKVPPGSGGGQK-WTTLVHSGVIFPPPYKPHGVKILYNGQPVDL 404
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
TPEQEEVATMFAVM DTDY K F +NF+ DWRK+LGKNHVI+ E CDF PIY+WH
Sbjct: 405 TPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLR 464
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
+KEKKKQM+SEEKKALKEEK KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG
Sbjct: 465 EKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 524
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
KLK+RI+PSDITINIGK PIPECPIPGESWKEVKHDNTVTWLAFWNDPI+ K+FKYVFL
Sbjct: 525 KLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFL 584
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
AASS+LKGQSD+EKYEK+RKLK ++H IR YTKDF S+D T++QIAVATYLIDKLALRA
Sbjct: 585 AASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRA 644
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEKD+DEA+TVGCCTLKV NV C+PPNKL+FDFLGKDSI+Y NTVEVEL VYKAI +F+
Sbjct: 645 GNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFR 704
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
GKK DLFDKLDT +LNAHLK+LMPGLTAKVFRTYNASITLD +L+K T DG + KI
Sbjct: 705 AGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKI 764
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
VYQRANKEVAIICNHQR+VSK+H +QM+RL EKI++LK +L+ DL + +KGK L
Sbjct: 765 AVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGK-NLG 823
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
D DGK KRNLAPEA E+K++Q KIEKME D K KEDLKTVALGTSKINYLDPRITVA
Sbjct: 824 NDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVA 883
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKRHEVPIEKIFNKSL+AKF+WAMDVDP+FRF
Sbjct: 884 WCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916
>gi|326490327|dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 946
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/755 (65%), Positives = 585/755 (77%), Gaps = 35/755 (4%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
D+DSED+KPL++RL N+ ASK+ + S DS+DE PLS+RF +
Sbjct: 225 DDDSEDEKPLASRLPTNA--------ASKSRGSAS---------DSEDEKPLSARFSRGT 267
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKV 313
AGTS +S +K P +K N S++ VKRP + + +S+ KK K
Sbjct: 268 AGTS-VSISNSKDKLPSNNKGLNNNSSAPRNS-------VKRPGDNNNQT-SSALKKIKY 318
Query: 314 SDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKK-SVTNTAKATK-SVSSSSN 371
SD S VK+ E K DD + IP+ +++ S K V N K + SV +
Sbjct: 319 SDVSVSGSVKR-----ESKDDDSNSIPVERKLTLGESSKSKLPVKNIVKKSPLSVKKDNK 373
Query: 372 KINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEV 431
K KTKK +K+SQ+SKS + PGSG G KKW+TL HNGVIFPP Y PHGVKMLY G+ V
Sbjct: 374 KFKTKTKKAMKSSQFSKSLREPPGSGGG-KKWSTLEHNGVIFPPLYDPHGVKMLYNGQPV 432
Query: 432 NLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWH 491
LTP++EEVATMFAVM DT+Y K F +NF+ DW+K+LGKNH+I+ E CDF PI++WH
Sbjct: 433 ELTPDEEEVATMFAVMKDTEYATKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIFEWH 492
Query: 492 QEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK 551
+KEKKKQM+SEEKKAL+EEK KQEEKYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPK
Sbjct: 493 LREKEKKKQMTSEEKKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPK 552
Query: 552 MGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYV 611
MGKLK+RI+PSDITINIGKD P+PECPI GESWKEVKHDNTVTWLAFWNDPI+ K+FKYV
Sbjct: 553 MGKLKRRIRPSDITINIGKDTPVPECPIEGESWKEVKHDNTVTWLAFWNDPISQKDFKYV 612
Query: 612 FLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLAL 671
FLAASSSLKGQSD+EKYEK+RKLKD+IH+IR YTKDF S+D +++QIAVATYLIDKLAL
Sbjct: 613 FLAASSSLKGQSDKEKYEKSRKLKDHIHNIRVNYTKDFKSKDVSKKQIAVATYLIDKLAL 672
Query: 672 RAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
RAGNEKDDDEADTVGCCTLKV NV C+PPNKL+FDFLGKDSI+Y NTVEVELPVY AI +
Sbjct: 673 RAGNEKDDDEADTVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELPVYNAIEE 732
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV 791
F+TGKK D +FDKLDT KLN HLK+LMPGLTAKVFRTYNASITLD +L++ T DG +
Sbjct: 733 FRTGKKDGDAVFDKLDTTKLNHHLKDLMPGLTAKVFRTYNASITLDAILHEETEDGTLLE 792
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
KI VYQRANKEVAIICNHQR VSK+H QM++L EKI++LK + +L DL + K+GK P
Sbjct: 793 KIAVYQRANKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQVDELNKDLGKMKRGK-P 851
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
L +DGK KR LAPEA+E+K++Q KIEKME D KTKEDLKTVALGTSKINYLDPRIT
Sbjct: 852 LGNGADGKPKRTLAPEAIEKKISQIETKIEKMEMDKKTKEDLKTVALGTSKINYLDPRIT 911
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VAWCK HEVPIEKIF+K++LAKF WAMDV+P+FRF
Sbjct: 912 VAWCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 946
>gi|4165154|gb|AAD08711.1| topoisomerase I [Nicotiana tabacum]
gi|14626487|gb|AAK69776.1| topoisomerase I [Nicotiana tabacum]
Length = 852
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/906 (60%), Positives = 647/906 (71%), Gaps = 83/906 (9%)
Query: 45 MAVEASSKPSRVYDFDDDEDG-PAVFKRNTAA--------------SRQNLANPEVKRPS 89
MAVEA SK + + DDD+D P VFKR++ R +V+ P
Sbjct: 1 MAVEAFSKTKLMAEVDDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQASDVRSP- 59
Query: 90 SSTANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSP 149
NGQ+S+A K K SS KAS + SP SP SP S
Sbjct: 60 ----NGQSSSAEKVKAGTSS--------------------KASRAVSPFTSPKASP-SSG 94
Query: 150 VKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDND----SEDDKPLSA 205
SP NS+ S+ ++ K Q + + E K KS+ ND SEDDKPLSA
Sbjct: 95 RTSPAPNSRPSASAGNQAKDVNQQSKIV---PNEPKQAVEPKSEPNDEAEDSEDDKPLSA 151
Query: 206 RLKGNSK-----NVNQGIGASKADAAISEVNVKTDP---EDSDDEVPLSSRFP-KSNAGT 256
RL + N+ +G S A++ K+ P EDSDDE+PL+SRF KSNAG
Sbjct: 152 RLSSGLSKSNSSHANKVLGTS---ASVQ----KSRPPKKEDSDDEIPLASRFQLKSNAGA 204
Query: 257 SGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDT 316
S +K +S+E KP K++QNG S ++V KRP S K
Sbjct: 205 STSKSSNSEEVKP---KIRQNGLPS-------TTVLSKRPPGDVSLLLRLQLKSLGFLMH 254
Query: 317 SKEVKVKQVTVKVEKKADDDDH-IPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINK 375
+V + +VK EKK +DDD +PISQR+K S S K +++ KATK VSSS K
Sbjct: 255 LHLFRVSEASVKPEKKTEDDDDDVPISQRIKKSVASASK-LSSAKKATKVVSSSMKTKKK 313
Query: 376 KTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTP 435
K S+YSKS+K+ P SG+GQK WTTLVHNGVIFPPPY PHGVKMLYKGK V+LTP
Sbjct: 314 LKK-----SKYSKSSKLQPSSGEGQK-WTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTP 367
Query: 436 EQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQK 495
EQEEVATM+AVMLDTDYM K +F+ENF NDWRK+LGKNHVIQNL+ CDF PIY+ +K
Sbjct: 368 EQEEVATMYAVMLDTDYMSKLQFKENFMNDWRKILGKNHVIQNLDDCDFTPIYERPSSEK 427
Query: 496 EKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 555
EKKKQMS++ K+ L+EEK KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 428 EKKKQMSTKRKRPLREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 487
Query: 556 KKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
K+RI+P+DITINIGK PIPECPIPGE WKEV+HDNTVTWLAFWNDPINP+EFKYVFLAA
Sbjct: 488 KRRIRPNDITINIGKGAPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPREFKYVFLAA 547
Query: 616 SSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGN 675
SSSLKGQSD+EKYEKAR+LKDYI IR+AYTKDF S+D +RQIAVATYLIDKLALRAGN
Sbjct: 548 SSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFTSKDPVKRQIAVATYLIDKLALRAGN 607
Query: 676 EKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
EKDDDEADTVGCCTLKV NVE +PPN LKFDFLGKDSI+Y N V V PV+KAI F++G
Sbjct: 608 EKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYKPVFKAIQLFRSG 667
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV 795
KK DDLFDKLDT+KLNAHLKELMPGLTAKVFRTYNAS+TL+ L K T G++A K+ V
Sbjct: 668 KKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASVTLEQQLTKLTQGGELAEKVAV 727
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKD 855
Y ANKEVAIICNHQR+VSK+HS Q+S+L EKI++LK +L++ +VDL RAKKGKPPL K
Sbjct: 728 YNLANKEVAIICNHQRSVSKSHSVQISKLNEKIDELKALLEEFKVDLARAKKGKPPL-KG 786
Query: 856 SDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWC 915
+DGK KRNLAPEAL++K+ QTN KIE +E+ ++TKE+LKTVALGTSKINYLDPRITVAWC
Sbjct: 787 ADGKAKRNLAPEALQKKIDQTNVKIENIEKQIETKEELKTVALGTSKINYLDPRITVAWC 846
Query: 916 KRHEVP 921
+RH P
Sbjct: 847 ERHRFP 852
>gi|297739132|emb|CBI28783.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/720 (70%), Positives = 576/720 (80%), Gaps = 22/720 (3%)
Query: 237 EDSDDEVPLSS----RFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSS-SV 291
EDS+D+ PLS+ R PK N+ K L+S V Q+ T ++ S +
Sbjct: 17 EDSEDDKPLSAKLSARLPKGNSHVL----------KGLSSPVLQSQKTKVDSSDDSEDEI 66
Query: 292 PVKRPLQKASSSGASSAK----KPKVSDTSKEVKVKQVTVKVEKKADD-DDHIPISQRMK 346
P+ LQ S GASS+K K S S + ++ V + +DD +D IP+S + +
Sbjct: 67 PLLLKLQLKSRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFR 126
Query: 347 NSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTL 406
S + K S + K KK+KK+ K+S+YSKSTK+ P SG+GQK WTTL
Sbjct: 127 LKTVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQK-WTTL 185
Query: 407 VHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDW 466
HNGVIFPPPY PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY KP+F ENF NDW
Sbjct: 186 EHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDW 245
Query: 467 RKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVD 526
R LGKNHVI+ E CDF PIY+WH+++KEKKKQM++EEKKALKEEK KQE+KYMWA+VD
Sbjct: 246 RVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVD 305
Query: 527 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKE 586
GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI PSDITINIGK+ P+PECPIPGE WKE
Sbjct: 306 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKE 365
Query: 587 VKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYT 646
V+HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+EKYEKAR LKDYI +IRA YT
Sbjct: 366 VRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYT 425
Query: 647 KDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFD 706
KDF ++D +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV +PPNKL+FD
Sbjct: 426 KDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFD 485
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
FLGKDSI+Y NTVEVELPVYKAIGQF+TGK DDLFDKLDT+KLNAHLKELMPGLTAKV
Sbjct: 486 FLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKV 545
Query: 767 FRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
FRTYNASITLD MLN+ GD KI +YQ ANKEVAIICNHQR+VSK+H QMSRL+E
Sbjct: 546 FRTYNASITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSE 605
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
K+ +L+GVL +L+ DL RAKKGKPPL KDSDGK K+N+ PE LERK+AQTN KIEKMERD
Sbjct: 606 KMRELQGVLDELKTDLARAKKGKPPL-KDSDGKPKKNMTPEVLERKIAQTNTKIEKMERD 664
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
MKTKEDLKTVALGTSKINYLDPRI+VAWCKR EVPIEKIFNKSLLAKFAWAMDVDP FRF
Sbjct: 665 MKTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 724
>gi|297803422|ref|XP_002869595.1| hypothetical protein ARALYDRAFT_329014 [Arabidopsis lyrata subsp.
lyrata]
gi|297315431|gb|EFH45854.1| hypothetical protein ARALYDRAFT_329014 [Arabidopsis lyrata subsp.
lyrata]
Length = 785
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/792 (63%), Positives = 596/792 (75%), Gaps = 65/792 (8%)
Query: 191 KSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP 250
+SD+ DSED +PLS+ L NS + I + E DDE P+SSRF
Sbjct: 23 RSDNGDSEDVRPLSSILFRNSP-------LDRPSEIIKD-------ESDDDEAPISSRFR 68
Query: 251 KSNA-GTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAK 309
K N G SG+K +DE K L +K++ NGST + + S V KR L+K+SS+ SS K
Sbjct: 69 KKNGNGVSGSKQDSTDENKSLVNKLK-NGST---LEHECSKVSGKRILEKSSSADQSSMK 124
Query: 310 KPKVSDTSKEVKVKQVTVK-------VE--------------KKADDDDHIPISQRMKNS 348
K KVS +S V +KQ ++K VE DDDD +PI++R+K+
Sbjct: 125 KLKVSSSSTSVAMKQDSLKKLGDKRKVEVSPKKLSVKEDETEDDDDDDDDVPIAKRIKSE 184
Query: 349 A-----PSVKKSVTN--------TAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPG 395
+ PS K V +K + VS S +KK+KKV+ S+++KS+K LP
Sbjct: 185 SSKYKTPSAKPKVVKQSSTSSATKSKVKRVVSPPSKTRSKKSKKVMNESKFAKSSKTLP- 243
Query: 396 SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
+GDG+KKWTTLVHNGV FPPPY PHGV++LYKG VNL+P+QEEVATMFAVM +TD+ K
Sbjct: 244 TGDGKKKWTTLVHNGVTFPPPYKPHGVQILYKGNPVNLSPDQEEVATMFAVMRETDFYNK 303
Query: 456 PKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKN- 514
P+FRENFWNDWRKLLGKNHVIQ L+ CDF PIYDWH + ++KK EKN
Sbjct: 304 PRFRENFWNDWRKLLGKNHVIQKLDDCDFTPIYDWH---------LEEKKKKKASPEKNP 354
Query: 515 KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPI 574
KQ EKYMWA+VDGVKEKVGNF VEPPGLFRGRGEHPK+GKLK+RI PSDIT+NIGKD PI
Sbjct: 355 KQGEKYMWAVVDGVKEKVGNFSVEPPGLFRGRGEHPKIGKLKRRIYPSDITLNIGKDAPI 414
Query: 575 PECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKL 634
PECPIPGE WKEVKHDNTV WLA W DPI+P +KYV L+ASSS KGQSD++KYEKAR L
Sbjct: 415 PECPIPGERWKEVKHDNTVIWLAIWKDPIHPGRYKYVSLSASSSQKGQSDKKKYEKARNL 474
Query: 635 KDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN 694
KD+I +IRA YTK+F ++D + RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN
Sbjct: 475 KDHIENIRATYTKNFTAKDVSNRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN 534
Query: 695 VECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
VEC+PPNKLKFDFLGKDSIQYVNTVEVE VYKAI QF+ GK +DDLFD+LDT+KLNAH
Sbjct: 535 VECVPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIAQFRAGKSNSDDLFDELDTSKLNAH 594
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
LKEL+ GLTAKVFRTYNASITLD ML + T +GDV K+ VYQ+ANKEVA+ICNHQRTVS
Sbjct: 595 LKELVTGLTAKVFRTYNASITLDVMLRQETREGDVKQKVVVYQQANKEVALICNHQRTVS 654
Query: 815 KTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMA 874
K+H AQ+ RL KIE+LK LK+L+ +L+RAKKGK PL + SDGK+ RN+ PEA E+K+A
Sbjct: 655 KSHGAQIQRLAGKIEELKEGLKELKNNLERAKKGKSPL-EGSDGKKTRNITPEAWEKKIA 713
Query: 875 QTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
Q KIEKME DM+TKEDLKTVALGTSKINY+DPRITVAWCKRHEVPIEKIFNKSLL KF
Sbjct: 714 QQKMKIEKMEGDMQTKEDLKTVALGTSKINYMDPRITVAWCKRHEVPIEKIFNKSLLEKF 773
Query: 935 AWAMDVDPEFRF 946
AWAMDV+P F F
Sbjct: 774 AWAMDVEPHFTF 785
>gi|357145005|ref|XP_003573489.1| PREDICTED: DNA topoisomerase 1-like [Brachypodium distachyon]
Length = 900
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/757 (63%), Positives = 578/757 (76%), Gaps = 45/757 (5%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
D+DSED+KPL++RL N+ A+ VNV +DS+DE PLS+RF + N
Sbjct: 185 DDDSEDEKPLASRLPNNA-------------ASKRRVNVS---DDSEDEKPLSARFSRLN 228
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKV 313
AG S + + + + K L++ N ++S VKRP S+ +S+ KK K
Sbjct: 229 AGASAS--VSNSKDKLLSNNKGPNNNSSAPRNS------VKRP-SDDSNQTSSAPKKAKP 279
Query: 314 SDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPS---VKKSVTNTAKATKSVSSSS 370
SDT+ VK+ E KAD+ + + K+ P+ VKKS +S
Sbjct: 280 SDTNASASVKR-----ESKADEVRRPTMGESSKSKPPAKNIVKKS---------PLSFKK 325
Query: 371 NKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKE 430
+ K KK +K+SQ+SKS ++ PGSG G KKW+TL HNGVIFPPPY PHGVKMLY G+
Sbjct: 326 DNNKNKNKKPMKSSQFSKSLRVPPGSGGG-KKWSTLEHNGVIFPPPYSPHGVKMLYNGQP 384
Query: 431 VNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDW 490
V LTP QEEVATMFAVM DT+Y K F +NF+ DWRK+LGKNHVI+ E CDF PIY+W
Sbjct: 385 VELTPAQEEVATMFAVMKDTEYATKKTFIDNFFGDWRKILGKNHVIKKFELCDFTPIYEW 444
Query: 491 HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 550
H +KEKKKQM+SEEKKAL+EEK KQEEK+MWA+VDG +EKVGNFRVEPPGLFRGRGEHP
Sbjct: 445 HLREKEKKKQMTSEEKKALREEKLKQEEKFMWAVVDGTREKVGNFRVEPPGLFRGRGEHP 504
Query: 551 KMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKY 610
KMGKLK+RI PSDITINIG P+PECP+ G+SWKEVKHDNTVTWLAFWNDPI+ K+FKY
Sbjct: 505 KMGKLKRRILPSDITINIGSGTPVPECPMEGQSWKEVKHDNTVTWLAFWNDPISQKDFKY 564
Query: 611 VFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLA 670
VFLAASSSLKGQSD+EKYEK+RKLKD+I+ IR YTKDF +D ++QIAVATYLIDKLA
Sbjct: 565 VFLAASSSLKGQSDKEKYEKSRKLKDHINKIRVNYTKDFKCKDTAKKQIAVATYLIDKLA 624
Query: 671 LRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIG 730
LRAGNEKDDDEADTVGCCTLKV NV C PPNKL+FDFLGKDSI+Y NTVEVELPVYKAI
Sbjct: 625 LRAGNEKDDDEADTVGCCTLKVDNVTCEPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIE 684
Query: 731 QFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVA 790
+F+ GKK D +FDKLDT KLNAHLK+LMPGLTAKVFRTYNASITLD +L++ T +G
Sbjct: 685 EFRAGKKSGDSVFDKLDTTKLNAHLKDLMPGLTAKVFRTYNASITLDAILHQETEEGKTL 744
Query: 791 V-KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK 849
+ KI VYQRANKEVAIICNHQR VSK+H +QM++L EKI++L +L+ DL + K+GK
Sbjct: 745 LEKIAVYQRANKEVAIICNHQRAVSKSHDSQMTKLNEKIDELVAQRDELKEDLVKVKRGK 804
Query: 850 PPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPR 909
PL K +DGK KRNLAPEA+E+K++Q KIEKME + KTKEDLKTVALGTSKINYLDPR
Sbjct: 805 -PLGKGADGKPKRNLAPEAIEKKISQIETKIEKMEMEKKTKEDLKTVALGTSKINYLDPR 863
Query: 910 ITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ITVAWCK HEVPIEKIF+K++ AKF WAMDV+P+FRF
Sbjct: 864 ITVAWCKTHEVPIEKIFSKTICAKFGWAMDVEPDFRF 900
>gi|219884043|gb|ACL52396.1| unknown [Zea mays]
Length = 574
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/571 (77%), Positives = 503/571 (88%), Gaps = 2/571 (0%)
Query: 376 KTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTP 435
K KK +KNSQ+SK K+ PGSG G KKWTTL HNGVIFPPPY PHGVKMLY GK ++LTP
Sbjct: 6 KLKKNMKNSQFSKIMKVPPGSGGG-KKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTP 64
Query: 436 EQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQK 495
EQEEVATMFAVM DTDY KP F +NF+ DWRK+LGKNH+I+N E CDF PIY+WH +K
Sbjct: 65 EQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREK 124
Query: 496 EKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 555
E+KKQM++EEKK L+E+K KQEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 125 ERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 184
Query: 556 KKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
K+RI PSDITINIGK P+PECPIPGESWKEVKHDNTVTWLAFWNDPINPK+FKYVFLAA
Sbjct: 185 KRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAA 244
Query: 616 SSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGN 675
SSSLKGQSD+EKYEK+RKLK +I IR YTKDF ++D TRRQIAVATYLIDKLALRAGN
Sbjct: 245 SSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGN 304
Query: 676 EKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
EKDDDEADTVGCCTLKV NV C+PPN+++FDFLGKDSI+Y NTVEVE VYKAI F+ G
Sbjct: 305 EKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAG 364
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV 795
KK DLFDK+DT++LNAHLK+LMPGLTAKVFRTYNASITLDG+L++ T DG V KI V
Sbjct: 365 KKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAV 424
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKD 855
YQRANKEVAIICNHQR+VSK+H +QM+R+ EKI++LK +++L+ DL++AKKGK PL D
Sbjct: 425 YQRANKEVAIICNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGK-PLGYD 483
Query: 856 SDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWC 915
S+GK KRNLAPEA+++K+A KIEKME D + KEDLKTVALGTSKINYLDPRITVAWC
Sbjct: 484 SEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWC 543
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
KRHEVPIEKIFNKSLLAKF WAMDVDPEFRF
Sbjct: 544 KRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 574
>gi|2330649|emb|CAA74890.1| topoisomerase I [Pisum sativum]
Length = 892
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/935 (59%), Positives = 651/935 (69%), Gaps = 81/935 (8%)
Query: 45 MAVEASSKPSRVYDFDDDEDG--PAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPK 102
MAVEAS K + FDDD D P FKR+ A + L + +K +T++ Q + +
Sbjct: 1 MAVEASDKSNLPGKFDDDSDDDQPLSFKRH--AKKSPLHSQAIK----TTSHSQEGRSNR 54
Query: 103 DKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSP 162
KT V S +K PS A +S+ KSPVANS S
Sbjct: 55 QKTDVPLSNGQNLK---PSNSAVNTSSN--------------------KSPVANSNSPS- 90
Query: 163 LDDRLKQSPQHNALAVVKKEE--IKD-----GNGLKSDDNDSEDDKPLSARLKGNSKNVN 215
L D+ K N VKK+ IK GL+ DD DDKPLS+R K S N
Sbjct: 91 LGDKPKPLLGQNVTVDVKKQTTPIKHPTKGYCEGLEDDD----DDKPLSSRWKIKS---N 143
Query: 216 QGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP-----KSNAGTSGAKPIDSDEKKPL 270
G SK A + D + DD VPLS+ SN+GTS D+D KKP+
Sbjct: 144 HG---SKVVAPVVNNKSSQDSDSDDDVVPLSANLSAKLIRNSNSGTSSMNYDDTD-KKPI 199
Query: 271 ASKVQ---QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTV 327
SKVQ QNGST+ QQK S++P+KR L S SSAKK K+SD++ +K K V+V
Sbjct: 200 -SKVQKKRQNGSTTSNKQQKLSTLPIKRELGNCDSP-HSSAKKSKISDSTTSIKTKHVSV 257
Query: 328 KVEKKADDDDH------IPISQRMKNS-----APSVKKSVTNTAKATKSVSSSSNKINKK 376
K E KA+++D +PIS R K S PS K + AK TK +S + K+
Sbjct: 258 KCEIKAEEEDDDDDDDELPISHRFKKSPTLSDKPSSTKKIL--AKVTKVNNSGTTSFKKQ 315
Query: 377 TKKVIKNSQYSKSTKMLPGSGDG---QKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
TK KN +++ L +KWTTLVHNGVIFPPPY PHGVKMLY G+ V+L
Sbjct: 316 TKNKSKNPSVAQNIPNLRNFFLALVMGRKWTTLVHNGVIFPPPYKPHGVKMLYMGRPVDL 375
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
TPE +AVM DTDYMQK +F+ENFWNDWRKLLG+NHVIQNL+ CDF PIYDW Q
Sbjct: 376 TPELRRGCYKYAVMRDTDYMQKDRFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWCQS 435
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
+KEKKKQM++EEKKALKEEK KQEEKY WAIVDGVK +VGNFRVEPPGLFRGRGEHPKMG
Sbjct: 436 EKEKKKQMTTEEKKALKEEKLKQEEKYTWAIVDGVKRRVGNFRVEPPGLFRGRGEHPKMG 495
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
+LKKRI PSDI INIG + +PECPIPGE WK++++DNTVTWL +W+DPINPK FKYVFL
Sbjct: 496 RLKKRIHPSDIVINIGSEAQVPECPIPGEGWKDIRNDNTVTWLCYWSDPINPKLFKYVFL 555
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
AASSSLKGQSD+EKYEKAR LKDYI +IRA YTKDF S+D T++QIAVATYLIDKLALRA
Sbjct: 556 AASSSLKGQSDKEKYEKARMLKDYIGNIRAYYTKDFTSKDITKQQIAVATYLIDKLALRA 615
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEKDDDEADTVGCCTLKV NV PNKLKF+FLGKDSI+Y NTVEVELPVY AI +FQ
Sbjct: 616 GNEKDDDEADTVGCCTLKVENVTRETPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQ 675
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
K DDLFDKLDT KLNAHLKELMPGLTAKVFRT+NASITLD LNK T DGD A KI
Sbjct: 676 KDKGPGDDLFDKLDTNKLNAHLKELMPGLTAKVFRTFNASITLDDKLNKDTKDGDAAEKI 735
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
VYQ ANK+VAIICNHQR+VSK+HSAQM++L EKI++L+ VLK+L+VDLDRA+KGK P
Sbjct: 736 VVYQHANKQVAIICNHQRSVSKSHSAQMTKLNEKIDELQDVLKELKVDLDRARKGKSP-T 794
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
K SDGK KR+L PE LE+K++QTNAKIEKM+RDMKTK DLKTVALGTSKINYLDPRITVA
Sbjct: 795 KSSDGKSKRSLTPEVLEKKISQTNAKIEKMQRDMKTKVDLKTVALGTSKINYLDPRITVA 854
Query: 914 WCKRHEVPIEKIFNKS----LLAKFAWAMDVDPEF 944
WCKRHEVPIEK+F KS LL ++ W D E
Sbjct: 855 WCKRHEVPIEKLFTKSLLQNLLGQWMWTQISDSEI 889
>gi|413921287|gb|AFW61219.1| DNA topoisomerase I [Zea mays]
Length = 602
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/563 (78%), Positives = 497/563 (88%), Gaps = 2/563 (0%)
Query: 384 SQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATM 443
SQ+SK K+ PGSG G KKWTTL HNGVIFPPPY PHGVKMLY GK ++LTPEQEEVATM
Sbjct: 42 SQFSKIMKVPPGSGGG-KKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATM 100
Query: 444 FAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSS 503
FAVM DTDY KP F +NF+ DWRK+LGKNH+I+N E CDF PIY+WH +KE+KKQM++
Sbjct: 101 FAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTT 160
Query: 504 EEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
EEKK L+E+K KQEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSD
Sbjct: 161 EEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSD 220
Query: 564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
ITINIGK P+PECPIPGESWKEVKHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQS
Sbjct: 221 ITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQS 280
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D+EKYEK+RKLK +I IR YTKDF ++D TRRQIAVATYLIDKLALRAGNEKDDDEAD
Sbjct: 281 DKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEAD 340
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLF 743
TVGCCTLKV NV C+PPN+++FDFLGKDSI+Y NTVEVE VYKAI F+ GKK DLF
Sbjct: 341 TVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGQDLF 400
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
DK+DT++LNAHLK+LMPGLTAKVFRTYNASITLDG+L++ T DG V KI VYQRANKEV
Sbjct: 401 DKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEV 460
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AIICNHQR+VSK+H +QM+R+ EKI++LK +++L+ DL++AKKGK PL DS+GK KRN
Sbjct: 461 AIICNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGK-PLGYDSEGKPKRN 519
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
LAPEA+++K+A KIEKME D + KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE
Sbjct: 520 LAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 579
Query: 924 KIFNKSLLAKFAWAMDVDPEFRF 946
KIFNKSLLAKF WAMDVDPEFRF
Sbjct: 580 KIFNKSLLAKFVWAMDVDPEFRF 602
>gi|357162496|ref|XP_003579431.1| PREDICTED: DNA topoisomerase 1-like [Brachypodium distachyon]
Length = 807
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/692 (63%), Positives = 531/692 (76%), Gaps = 25/692 (3%)
Query: 263 DSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKV 322
DS+++KPLA + + S + T + S +RP S++G SS K K
Sbjct: 133 DSEDEKPLAMRTTRLTSNASSTSRNSIK---RRPGD--SNTGTSSPLK----------KA 177
Query: 323 KQVTVKVEKKADD--DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSS------NKIN 374
K ++ E KA D D+ IP++ R+ + PS K A K S SS +
Sbjct: 178 KHSAIEREPKAADAHDNKIPLAPRLTSVKPSKTKPPAKNATKNKKKSPSSFTKDSQKGVE 237
Query: 375 KKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLT 434
K KK ++NS+ SK+ K+ GSG G KKW+TL HNGV+FPPPY+PHGVKMLY G+ V+LT
Sbjct: 238 MKAKKTVRNSRLSKAMKVRQGSGSG-KKWSTLEHNGVMFPPPYMPHGVKMLYNGQPVDLT 296
Query: 435 PEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQ 494
PEQEEVATMFAVM DT+Y K F NF+ DWRK+LGK H+I+ E CDF IY+WH +
Sbjct: 297 PEQEEVATMFAVMRDTEYASKETFINNFFTDWRKILGKTHIIKKFELCDFTTIYEWHLRE 356
Query: 495 KEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 554
KE KKQM++EEKKAL++EK K+EEKY+WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG+
Sbjct: 357 KENKKQMTTEEKKALRDEKGKREEKYLWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGR 416
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
LK+RI+P+DITINIGK P+P CPIPGESWKEVKHDNTVTWLAFWNDPIN K+FKYVFLA
Sbjct: 417 LKRRIRPNDITINIGKGTPVPVCPIPGESWKEVKHDNTVTWLAFWNDPINQKDFKYVFLA 476
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
ASSSLKGQSD+EKYEKARKLKD+I +IR YTKDF S+D ++QIAVATYL+DKLALRAG
Sbjct: 477 ASSSLKGQSDKEKYEKARKLKDHIDNIRVNYTKDFRSKDQVKKQIAVATYLVDKLALRAG 536
Query: 675 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT 734
NEKD+DEADTVGCCTLKV NV C+PPNKL+FDFLGKDSI+Y+NTVEVELPVY+A+ +F
Sbjct: 537 NEKDEDEADTVGCCTLKVENVTCLPPNKLQFDFLGKDSIRYLNTVEVELPVYEAVKEFCA 596
Query: 735 GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKID 794
GK + D++F ++DT KLNAHLKELMPGLTAKVFRTYNAS+TLD MLNK T DG + KI
Sbjct: 597 GKNKGDNVFAEIDTIKLNAHLKELMPGLTAKVFRTYNASVTLDAMLNKETEDGTLLQKIS 656
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMK 854
+Y+RANKEVAIICNHQR VSK+H +QM++L EKI++LK L+ +L++AKKGK P
Sbjct: 657 IYKRANKEVAIICNHQRAVSKSHDSQMAKLNEKIDELKVQRDGLKAELEKAKKGKRP-GD 715
Query: 855 DSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAW 914
D DG RK+ L PE LE K++ AKIE M E+ KTVALGTSKINYLDPRITVAW
Sbjct: 716 DKDGSRKKKLTPEMLENKISGIEAKIEGMVITKNNTEESKTVALGTSKINYLDPRITVAW 775
Query: 915 CKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
CK HE+PI KIF+K++L KF WAMDV P FRF
Sbjct: 776 CKTHEIPINKIFSKTILEKFGWAMDVGPGFRF 807
>gi|20258815|gb|AAM14018.1| putative DNA topoisomerase I [Arabidopsis thaliana]
Length = 514
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/511 (81%), Positives = 457/511 (89%), Gaps = 1/511 (0%)
Query: 436 EQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQK 495
EQEEVATMFAVM +TDY KP+FRENFWNDWR+LLGK HVIQ L+ CDF PIY+WH E+K
Sbjct: 2 EQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLEEK 61
Query: 496 EKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 555
EKKKQMS+EEKKALKEEK KQEEKYMWA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 62 EKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMGKL 121
Query: 556 KKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
KKRI P +IT+NIGK PIPECPI GE WKEVKHDNTVTWLAFW DPINPKEFKYVFL A
Sbjct: 122 KKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFLGA 181
Query: 616 SSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGN 675
SSLKG SD+EKYEKAR L D+I +IR YTK+F ++D RQIAVATYLIDKLALRAGN
Sbjct: 182 GSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGN 241
Query: 676 EKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
EKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ G
Sbjct: 242 EKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAG 301
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV 795
K + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI V
Sbjct: 302 KSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVV 361
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKD 855
YQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL +
Sbjct: 362 YQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EG 420
Query: 856 SDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWC 915
SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWC
Sbjct: 421 SDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWC 480
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
KRHEVPIEKIF KSLL KFAWAMDV+PE+RF
Sbjct: 481 KRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 511
>gi|14285799|sp|P93119.1|TOP1_DAUCA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|1800221|gb|AAB41401.1| topoisomerase I [Daucus carota]
Length = 790
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/815 (60%), Positives = 583/815 (71%), Gaps = 75/815 (9%)
Query: 172 QHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL-----KGNSKNVNQGIGASKADAA 226
+ NA V++K ++G +S+ DS+DDKPLS +L GNS ++ G S
Sbjct: 11 KQNASNVMEKTLKEEGQS-RSNSEDSDDDKPLSHKLSSGALNGNSHHIRMGSNLSCPSPY 69
Query: 227 IS-EVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ 285
S + + PE DE+ LSS + NAG S A+ DSDE KPLAS E +
Sbjct: 70 TSPKPRIIKGPE---DEMLLSSEL-QLNAGASNAESSDSDESKPLAS----------ELE 115
Query: 286 QKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRM 345
SSS+ KRPL + +S S +KK K+S+ S K T + E+ A DDD ++
Sbjct: 116 DPSSSLN-KRPLIQPKNSDPSPSKKAKLSEPSAPTNRKLKTAEQEEAAADDDPSISNRNK 174
Query: 346 KNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTK---MLPGSGDGQKK 402
K++ P+ K S K VS+S NK++ +SKS K +L +GQ
Sbjct: 175 KSTTPASKVS---DKKKRPDVSASVNKVD-----------FSKSLKVPLVLVKGRNGQ-- 218
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
LVHNGVIFPP Y PHGVKMLY+ V+LTPEQEEVATMFAVML+T+YM KPKFRENF
Sbjct: 219 --PLVHNGVIFPPLYKPHGVKMLYRENPVDLTPEQEEVATMFAVMLETEYMTKPKFRENF 276
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK-QEEKYM 521
+DWRK+LG+ H+IQNLE CDF PIY+WHQ +KEKKKQMS++EKKA+KE K++ ++EKYM
Sbjct: 277 MSDWRKILGEKHIIQNLEDCDFTPIYEWHQREKEKKKQMSTDEKKAIKEGKDETRKEKYM 336
Query: 522 WAIVDGV-KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPS-DITINIGKDVPIPECPI 579
WA+VDG+ +EKVGNFRV + + K ++KK + DITINIGKD PIPE PI
Sbjct: 337 WAVVDGMSREKVGNFRVGTTRVVQRSWRASKDPQVKKNVYSQIDITINIGKDAPIPEPPI 396
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
PGE WKE++HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKG+ REKYEK+RKLKDYI
Sbjct: 397 PGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGKVTREKYEKSRKLKDYIE 456
Query: 640 SIR-AAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECI 698
IR AAYTKDF S+D +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE
Sbjct: 457 GIRAAAYTKDFASKDSKKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVETK 516
Query: 699 PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKEL 758
PN LKFDFLGKDSI+Y N VEVE V+ AI QF++GK+ DDLFD+LDT+KLNAHLKEL
Sbjct: 517 RPNILKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKEL 576
Query: 759 MPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTV 813
MPGLTAKVFRTYNASITLD M L++ T GDVA K+ VYQ ANKEVAIICNHQRTV
Sbjct: 577 MPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTV 636
Query: 814 SKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE------ 867
SK+HSAQM RL EKIE+LKG+LK+L+ DL R KGKPPL K+SDGK KRNL +
Sbjct: 637 SKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDGKPKRNLNLKRYKGKL 695
Query: 868 ----------------ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
++ +K+AQTN KIEKMERD +TKEDLKTVALGTSKINYLDPRIT
Sbjct: 696 LKLIQKLRKWSETRRLSVTKKIAQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRIT 755
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VAWCKRH+VPIEKIFNKSLLAKFAWAMDV FRF
Sbjct: 756 VAWCKRHDVPIEKIFNKSLLAKFAWAMDVVLIFRF 790
>gi|168041703|ref|XP_001773330.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675372|gb|EDQ61868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 632
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/623 (68%), Positives = 497/623 (79%), Gaps = 18/623 (2%)
Query: 339 IPISQRMKNSAPSVKKSVTNTAKATKSVSSSS----NKINKKTKKVIKNSQYSKSTKML- 393
IP++QRM +S +KK V AKA+ S S++ + KK K ++ K++
Sbjct: 13 IPLAQRMSSSTSIIKKVVQQKAKASSSTGSTAIAARKLLEKKKAKRLQLQMMVTKKKVIT 72
Query: 394 ----------PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATM 443
P SGDG K WTTL HNGVIFPPPY PHGVKMLY GK V+LTP QEE+ATM
Sbjct: 73 KTTTKSKKVEPVSGDGVK-WTTLEHNGVIFPPPYEPHGVKMLYDGKPVDLTPAQEEIATM 131
Query: 444 FAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSS 503
FAVML+TDY +K +F +NFW+DW+ LGKNHVI+ E CDF PI+DWH +KE+KK MS+
Sbjct: 132 FAVMLETDYAKKERFIKNFWDDWKPYLGKNHVIKKFELCDFTPIFDWHAREKERKKSMST 191
Query: 504 EEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
EEKK LKEEK EEKYMWA+VDGVKEKVGNFRVEPPGLFRGRG+HPKMGKLK RI P D
Sbjct: 192 EEKKRLKEEKLAVEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGDHPKMGKLKTRILPHD 251
Query: 564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
I INIGKD +PECPIPG+ WKE++HDNTVTWLA+W DPIN KEFKYVFLAASSSLKGQS
Sbjct: 252 IVINIGKDAAVPECPIPGQRWKEIRHDNTVTWLAYWKDPINDKEFKYVFLAASSSLKGQS 311
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D +KYEKAR LKDYI IR YT DF S D T++QIAVATYLID+LALRAGNEKD+DEAD
Sbjct: 312 DMQKYEKARMLKDYIDDIRRTYTHDFSSSDPTKQQIAVATYLIDRLALRAGNEKDEDEAD 371
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLF 743
TVGCC+LKV +V + P L+FDFLGKDSI+Y NTVEV+ VYKAIGQF+ GKK+ DDLF
Sbjct: 372 TVGCCSLKVEHVTLVAPKSLQFDFLGKDSIRYFNTVEVDERVYKAIGQFKKGKKEGDDLF 431
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
++LDT KLN HLK +MP LTAKVFRTYNASITLD +L TG+ + + D YQRANK+V
Sbjct: 432 ERLDTTKLNLHLKGIMPSLTAKVFRTYNASITLDNLLQDTTGETTIEIIAD-YQRANKQV 490
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR+VSK HSAQM RL K+++L+ L++L DLDRAKKGKPPL KDS+GK KRN
Sbjct: 491 AILCNHQRSVSKGHSAQMERLEGKMQELEEQLEELETDLDRAKKGKPPL-KDSEGKVKRN 549
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
PEALE+K+A T KI+KM DM+ K+DLKTVALGTSKINY+DPRITVAWCKRHEVPIE
Sbjct: 550 QTPEALEKKIAATKQKIDKMRLDMRVKDDLKTVALGTSKINYMDPRITVAWCKRHEVPIE 609
Query: 924 KIFNKSLLAKFAWAMDVDPEFRF 946
KIFNKSLL+KFAWAM+V+P+FRF
Sbjct: 610 KIFNKSLLSKFAWAMEVEPDFRF 632
>gi|302805913|ref|XP_002984707.1| hypothetical protein SELMODRAFT_156783 [Selaginella moellendorffii]
gi|300147689|gb|EFJ14352.1| hypothetical protein SELMODRAFT_156783 [Selaginella moellendorffii]
Length = 579
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/545 (71%), Positives = 451/545 (82%), Gaps = 3/545 (0%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
WTTL HNGV+FPP Y PHGVKMLY G+ V+LTP QEEVATM+AVM DTDY + KF NF
Sbjct: 37 WTTLEHNGVMFPPAYQPHGVKMLYNGEPVDLTPAQEEVATMYAVMKDTDYATQAKFNSNF 96
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMW 522
W DW+K+LG NHVI+ LE CDF PIYDW+Q +KEKKKQ+SS EKK L++EK K EEKY W
Sbjct: 97 WQDWKKILGSNHVIKKLELCDFTPIYDWYQSEKEKKKQLSSAEKKQLRDEKAKAEEKYTW 156
Query: 523 AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGE 582
A+VDGVKEKVGNFRVEPPGLFRGRG+HPKMGKLK+RI P +I INIGK P+PECP+PG
Sbjct: 157 ALVDGVKEKVGNFRVEPPGLFRGRGQHPKMGKLKRRIFPENIVINIGKGAPVPECPMPGH 216
Query: 583 SWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIR 642
+WKE++HDNTVTWLAFWNDPIN KEFKYVFL SSSLK QSD +KYEKAR+LKDYI IR
Sbjct: 217 NWKEIRHDNTVTWLAFWNDPINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIR 276
Query: 643 AAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK 702
YTKDF S D T+RQIAVATYLID+LALRAGNEKDDDEADTVGCC+LKV +V+ + K
Sbjct: 277 KTYTKDFGSTDPTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLLDSKK 336
Query: 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPG 761
++FDFLGKDSI+Y+N V VE V+KAIG FQ G KK DDLFD+LDT KLNAHLKE MP
Sbjct: 337 IEFDFLGKDSIRYLNEVAVEEKVFKAIGDFQKGRKKSGDDLFDRLDTNKLNAHLKEFMPE 396
Query: 762 LTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQM 821
LTAKVFRTYNASITLD L G V KI YQRANKEVA++CNHQRTVSK+H AQM
Sbjct: 397 LTAKVFRTYNASITLDNQLEHTDG-SIVPEKIGDYQRANKEVAVLCNHQRTVSKSHGAQM 455
Query: 822 SRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIE 881
+L K+ +LK + +++ +DL+RA+KGKPP KD DGK KRN +PE LE+K+ QT+ KI+
Sbjct: 456 EKLEGKMAELKALREEIVIDLERARKGKPP-RKDEDGKTKRNQSPEQLEKKLEQTDNKIQ 514
Query: 882 KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVD 941
KME DMK K+DLKTVALGTSKINYLDPRITVAWCKR++VPIEKIF KSLL KF WA++ +
Sbjct: 515 KMELDMKVKDDLKTVALGTSKINYLDPRITVAWCKRNDVPIEKIFTKSLLQKFTWALEAE 574
Query: 942 PEFRF 946
P FRF
Sbjct: 575 PTFRF 579
>gi|302794059|ref|XP_002978794.1| hypothetical protein SELMODRAFT_152781 [Selaginella moellendorffii]
gi|300153603|gb|EFJ20241.1| hypothetical protein SELMODRAFT_152781 [Selaginella moellendorffii]
Length = 533
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/535 (71%), Positives = 443/535 (82%), Gaps = 2/535 (0%)
Query: 412 IFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG 471
+FPP Y PHGVKMLY G+ V+LTP QEEVATM+AVM DTDY + KF NFW DW+K+LG
Sbjct: 1 MFPPAYQPHGVKMLYNGEPVDLTPAQEEVATMYAVMKDTDYATQAKFNSNFWQDWKKILG 60
Query: 472 KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
NHVI+ LE CDF PIYDW+Q +KEKKKQ+SS EKK L++EK K EEKY WA+VDGVKEK
Sbjct: 61 SNHVIKKLELCDFTPIYDWYQSEKEKKKQLSSAEKKQLRDEKAKAEEKYTWALVDGVKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
VGNFRVEPPGLFRGRG+HPKMGKLK+RI P +I INIGK P+PECP+PG +WKE++HDN
Sbjct: 121 VGNFRVEPPGLFRGRGQHPKMGKLKRRIFPENIVINIGKGAPVPECPMPGHNWKEIRHDN 180
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
TVTWLAFWNDPIN KEFKYVFL SSSLK QSD +KYEKAR+LKDYI IR YTKDF S
Sbjct: 181 TVTWLAFWNDPINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGS 240
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKD 711
D T+RQIAVATYLID+LALRAGNEKDDDEADTVGCC+LKV +V+ + K++FDFLGKD
Sbjct: 241 TDPTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLLDSKKIEFDFLGKD 300
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y+N V VE V+KAIG FQ GKK DDLFD+LDT KLNAHLKE MP LTAKVFRTYN
Sbjct: 301 SIRYLNEVAVEEKVFKAIGDFQKGKKSGDDLFDRLDTNKLNAHLKEFMPELTAKVFRTYN 360
Query: 772 ASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL 831
ASITLD L G V KI YQRANKEVA++CNHQRTVSK+H AQM +L K+ +L
Sbjct: 361 ASITLDNQLEHTDG-SIVPEKIGDYQRANKEVAVLCNHQRTVSKSHGAQMEKLEGKMAEL 419
Query: 832 KGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKE 891
K + +++ +DL+RA+KGKPP KD DGK KRN +PE LE+K+ QT+ KI+KME DMK K+
Sbjct: 420 KALREEIVIDLERARKGKPP-RKDEDGKTKRNQSPEQLEKKLEQTDNKIQKMELDMKVKD 478
Query: 892 DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
DLKTVALGTSKINYLDPRITVAWCKR++VPIEKIF KSLL KF WA++ +P FRF
Sbjct: 479 DLKTVALGTSKINYLDPRITVAWCKRNDVPIEKIFTKSLLQKFTWALEAEPTFRF 533
>gi|302794067|ref|XP_002978798.1| hypothetical protein SELMODRAFT_109207 [Selaginella moellendorffii]
gi|300153607|gb|EFJ20245.1| hypothetical protein SELMODRAFT_109207 [Selaginella moellendorffii]
Length = 597
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/522 (72%), Positives = 433/522 (82%), Gaps = 3/522 (0%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
WTTL HNGV+FPP Y PHGVKMLY G+ V+LTP QEEVATM+AVM DTDY + KF NF
Sbjct: 61 WTTLEHNGVMFPPAYQPHGVKMLYNGEPVDLTPAQEEVATMYAVMKDTDYATQAKFNSNF 120
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMW 522
W DW+K+LG NHVI+ LE CDF PIYDW+Q +KEKKKQ+SS EKK L++EK K EEKY W
Sbjct: 121 WQDWKKILGSNHVIKKLELCDFTPIYDWYQSEKEKKKQLSSAEKKQLRDEKAKAEEKYTW 180
Query: 523 AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGE 582
A+VDGVKEKVGNFRVEPPGLFRGRG+HPKMGKLK+RI P +I INIGK P+PECP+PG
Sbjct: 181 ALVDGVKEKVGNFRVEPPGLFRGRGQHPKMGKLKRRIFPENIVINIGKGAPVPECPMPGH 240
Query: 583 SWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIR 642
+WKE++HDNTVTWLAFWNDPIN KEFKYVFL SSSLK QSD +KYEKAR+LKDYI IR
Sbjct: 241 NWKEIRHDNTVTWLAFWNDPINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIR 300
Query: 643 AAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK 702
YTKDF S D T+RQIAVATYLID+LALRAGNEKDDDEADTVGCC+LKV +V+ + K
Sbjct: 301 KTYTKDFGSTDPTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLLDSKK 360
Query: 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPG 761
++FDFLGKDSI+Y+N V VE V+KAIG FQ G KK DDLFD+LDT KLNAHLKE MP
Sbjct: 361 IEFDFLGKDSIRYLNEVAVEEKVFKAIGDFQKGRKKSGDDLFDRLDTNKLNAHLKEFMPE 420
Query: 762 LTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQM 821
LTAKVFRTYNASITLD L G V KI YQRANKEVA++CNHQRTVSK+H AQM
Sbjct: 421 LTAKVFRTYNASITLDNQLEHTDG-SIVPEKIGDYQRANKEVAVLCNHQRTVSKSHGAQM 479
Query: 822 SRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIE 881
+L K+ +LK + +++ +DL+RA+KGKPP KD DGK KRN +PE LE+K+ QT+ KI+
Sbjct: 480 EKLEGKMAELKALREEIVIDLERARKGKPP-RKDEDGKTKRNQSPEQLEKKLEQTDNKIQ 538
Query: 882 KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
KME DMK K+DLKTVALGTSKINYLDPRITVAWCKR++VPIE
Sbjct: 539 KMELDMKVKDDLKTVALGTSKINYLDPRITVAWCKRNDVPIE 580
>gi|168041204|ref|XP_001773082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675629|gb|EDQ62122.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 502
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/504 (73%), Positives = 426/504 (84%), Gaps = 2/504 (0%)
Query: 443 MFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMS 502
MFAVM++TDY +K +F +NFW+DW+ LGKNHVI+ E CDF PI+ WH +KE+KK MS
Sbjct: 1 MFAVMIETDYAKKERFVKNFWDDWKPYLGKNHVIKKFELCDFTPIFQWHAREKERKKNMS 60
Query: 503 SEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPS 562
+EEKK LKEEK EEKYMWA+VDGVKEKVGNFRVEPPGLFRGRG+HPKMGKLK RI P
Sbjct: 61 AEEKKRLKEEKLAAEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGDHPKMGKLKTRILPH 120
Query: 563 DITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQ 622
DI INIGKD P+PECPIPG+ WKEV+HDNTVTWLA+W DPIN KEFKYVFLAASSSLKGQ
Sbjct: 121 DIVINIGKDAPVPECPIPGQKWKEVRHDNTVTWLAYWKDPINDKEFKYVFLAASSSLKGQ 180
Query: 623 SDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA 682
SD KYEKAR LKDYI +IR YTKDF S D T++QIAVATYLID+LALRAGNEKD+DEA
Sbjct: 181 SDMLKYEKARTLKDYIDNIRRTYTKDFSSSDPTKQQIAVATYLIDRLALRAGNEKDEDEA 240
Query: 683 DTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDL 742
DTVGCC+LKV +V I P L+FDFLGKDSI+Y NTVEV+ VYKAIGQF+ GKK DDL
Sbjct: 241 DTVGCCSLKVEHVSLIAPKSLQFDFLGKDSIRYFNTVEVDERVYKAIGQFKKGKKGGDDL 300
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKE 802
F++LDT KLN HLK +MPGLTAKVFRTYNASITLD +L G+ + + D YQRANKE
Sbjct: 301 FERLDTTKLNLHLKGIMPGLTAKVFRTYNASITLDTLLQDTRGETTIEIIAD-YQRANKE 359
Query: 803 VAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKR 862
VAI+CNHQR+VSK HSAQM RL K+++L+ L++L DLDRAK+GKPPL KDS+GK KR
Sbjct: 360 VAILCNHQRSVSKGHSAQMERLELKMQELEEQLEELETDLDRAKRGKPPL-KDSEGKVKR 418
Query: 863 NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
N PEALE+K+A T KI+KM DM+ K+DLKTVALGTSKINY+DPRITVAWCKRHEVPI
Sbjct: 419 NQTPEALEKKIASTTQKIDKMRLDMRVKDDLKTVALGTSKINYMDPRITVAWCKRHEVPI 478
Query: 923 EKIFNKSLLAKFAWAMDVDPEFRF 946
EKIFNKSLL+KFAWAM+V+P+FRF
Sbjct: 479 EKIFNKSLLSKFAWAMEVEPDFRF 502
>gi|357467001|ref|XP_003603785.1| DNA topoisomerase I [Medicago truncatula]
gi|355492833|gb|AES74036.1| DNA topoisomerase I [Medicago truncatula]
Length = 789
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/779 (55%), Positives = 516/779 (66%), Gaps = 104/779 (13%)
Query: 142 VKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDK 201
++S + S V+S V S S+ +SP L ++E D D ED
Sbjct: 63 IRSAMASAVESSVGISNASTSNLKTYTRSPSTKHLKEDRRE----------DSADEEDSM 112
Query: 202 PLSA-RLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAK 260
PLS R+K N+ NV KA + +K ED DD++PLS+R
Sbjct: 113 PLSVIRMKMNNANVK------KATPNV----LKKSYEDFDDDIPLSARLS---------- 152
Query: 261 PIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEV 320
Q + Q+K+S++ VKRPL + S SS KK K+S + +
Sbjct: 153 --------------QITNYDDSDKQEKASTLSVKRPLDEFESLH-SSGKKSKLSHPASSI 197
Query: 321 KVKQVTVKVEKKADDDDH---IPISQRMKNSA--PSVKKSVTNTAKATKSVSSSSNKINK 375
KQ T+K + KA++++ IPIS+RM A S K +TN K K V + S K
Sbjct: 198 NAKQTTMKCDVKAEEEEEDDDIPISRRMNKLANKSSYSKKLTNDTKVNK-VDAPSFKKKA 256
Query: 376 KTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTP 435
+ KK S++ KSTK SGDGQKKWTTLVHNGVIFPPPY PHGVK+LYKGK V LTP
Sbjct: 257 RLKKSGNKSKHVKSTKHQLSSGDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPVTLTP 316
Query: 436 EQE------------------------------EVATMFAVMLDTDYMQKPKFRENFWND 465
EQE EVATMFAV DT Y Q F+ NFWND
Sbjct: 317 EQEEKYQSLRLIPIETRYWATWPCSICSIMIVREVATMFAVT-DTKYSQNEIFKVNFWND 375
Query: 466 WRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIV 525
WRKLLG+NH+IQNL+ CD PIYDW Q +K+KKKQMSS EKKALKEEK KQEEKYMWAIV
Sbjct: 376 WRKLLGENHMIQNLKDCDITPIYDWCQIEKDKKKQMSSAEKKALKEEKMKQEEKYMWAIV 435
Query: 526 DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWK 585
DGVKEKVG+FRVEPPGLF GRGEHPK+GK+K+RI P D+TINIGK PIPECPIPGESWK
Sbjct: 436 DGVKEKVGSFRVEPPGLFIGRGEHPKIGKVKRRILPHDVTINIGKYAPIPECPIPGESWK 495
Query: 586 EVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIR-AA 644
+ H++TVTWLA W DPI+PK KYV+L ASSSLKG+SD+EKYEKAR LK YI +IR AA
Sbjct: 496 -ITHEDTVTWLAKWCDPIDPKLIKYVWLGASSSLKGKSDKEKYEKARMLKSYIGNIRAAA 554
Query: 645 YTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK 704
YTK F S+ T++QIAVATY IDKLALRAGNEKDD+EADTVGCCTLKV NV NKLK
Sbjct: 555 YTKGFKSKYITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENVTAQGHNKLK 614
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
F+FLGKDSI+Y NTVEVELPVY AI +FQ K DDLFDKLDT+KLNAHLKELMP LTA
Sbjct: 615 FEFLGKDSIKYENTVEVELPVYNAILKFQKDKHPGDDLFDKLDTSKLNAHLKELMPNLTA 674
Query: 765 KVFRTYNASITLDGM---------------LNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
KVF T+NAS TLD M LNK T DGDVA K+ V+++ANK+VAIICNH
Sbjct: 675 KVFCTFNASFTLDDMVKSSLRRDYYVFKLKLNKETKDGDVAEKVYVHRQANKQVAIICNH 734
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEA 868
QR+VSK+HS Q+S+L EKI++L+ K+L++DL+RAKK KPPL K SD K +RN PEA
Sbjct: 735 QRSVSKSHSEQISKLNEKIDELQ---KELKIDLERAKKQKPPL-KCSDRKDRRNFNPEA 789
>gi|302770158|ref|XP_002968498.1| hypothetical protein SELMODRAFT_145504 [Selaginella moellendorffii]
gi|300164142|gb|EFJ30752.1| hypothetical protein SELMODRAFT_145504 [Selaginella moellendorffii]
Length = 525
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/523 (69%), Positives = 417/523 (79%), Gaps = 9/523 (1%)
Query: 424 MLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCD 483
MLY G+ ++LTPE+EE+ATMFAVM DTDY KP F +NFW DW+K+LG HVIQ LE CD
Sbjct: 1 MLYNGRPIDLTPEEEEIATMFAVMKDTDYATKPVFVKNFWEDWKKVLGPKHVIQKLELCD 60
Query: 484 FKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLF 543
F PI+DWH +KEKKKQMS+EEKK LKEEK K EE+Y W ++DGV GNFRVEPPGLF
Sbjct: 61 FTPIFDWHAAEKEKKKQMSAEEKKQLKEEKAKAEERYAWVLIDGV----GNFRVEPPGLF 116
Query: 544 RGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 603
RGRGEHPKMGKLK+RI P DI +NIGK+ P+PECP+PG WKEV+HDNTVTWLAFWNDPI
Sbjct: 117 RGRGEHPKMGKLKRRIFPEDIVLNIGKEAPVPECPLPGHKWKEVRHDNTVTWLAFWNDPI 176
Query: 604 NPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVAT 663
N KEFKYVFL SSSLKG+SD EKY+KARKL I SIR +YTKDF +D RQIAVAT
Sbjct: 177 NVKEFKYVFLHQSSSLKGKSDEEKYDKARKLTSKIDSIRESYTKDFKEKDVEARQIAVAT 236
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEL 723
YLID+LALRAGNEKDDDEADTVGCC+LKV +V PPN L+FDFLGKDSI+Y N+V V
Sbjct: 237 YLIDRLALRAGNEKDDDEADTVGCCSLKVEHVSLSPPNSLEFDFLGKDSIRYQNSVVVNE 296
Query: 724 PVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG 783
VY AI F+ GKK+ DLFD+LDT+KLNAHLK+ M GLTAKVFRTYNAS TL+ L +
Sbjct: 297 EVYDAIHDFKKGKKEGVDLFDRLDTSKLNAHLKKYMQGLTAKVFRTYNASYTLETQLKET 356
Query: 784 TGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLD 843
G + K Y RANKEVAI+CNHQRTVSK HSAQM RL KI +LK + ++L DL
Sbjct: 357 LG-ATLNEKTAEYSRANKEVAILCNHQRTVSKGHSAQMERLEAKIAELKTLREELATDLG 415
Query: 844 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 903
+ KKGKPP+ + KR E LE+K+AQT+A+I KM D+ KEDLKTVALGTSKI
Sbjct: 416 KVKKGKPPVHSTA----KRPPTAEQLEKKLAQTDARIAKMTLDLSVKEDLKTVALGTSKI 471
Query: 904 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
NY+DPRITVAWCKRHE+PIEK+FNKSLLAKFAWAM+V+P FRF
Sbjct: 472 NYMDPRITVAWCKRHEIPIEKVFNKSLLAKFAWAMNVEPNFRF 514
>gi|302788430|ref|XP_002975984.1| hypothetical protein SELMODRAFT_151078 [Selaginella moellendorffii]
gi|300156260|gb|EFJ22889.1| hypothetical protein SELMODRAFT_151078 [Selaginella moellendorffii]
Length = 525
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/523 (68%), Positives = 417/523 (79%), Gaps = 9/523 (1%)
Query: 424 MLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCD 483
MLY G+ V+LTPE+EE+ATMFAVM DTDY KP F +NFW DW+K+LG HVIQ E CD
Sbjct: 1 MLYNGRPVDLTPEEEEIATMFAVMKDTDYATKPVFVKNFWEDWKKVLGPKHVIQKFELCD 60
Query: 484 FKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLF 543
F PI+DWH +KEKKKQMS+EEKK LKEEK K EE+Y W ++DGV GNFRVEPPGLF
Sbjct: 61 FTPIFDWHAAEKEKKKQMSAEEKKQLKEEKAKAEERYAWVLIDGV----GNFRVEPPGLF 116
Query: 544 RGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 603
RGRGEHPKMGKLK+RI P DI +NIGK+ P+PECP+PG WKEV+HDNTVTWLAFWNDPI
Sbjct: 117 RGRGEHPKMGKLKRRIFPEDIVLNIGKEAPVPECPLPGHKWKEVRHDNTVTWLAFWNDPI 176
Query: 604 NPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVAT 663
N KEFKYVFL SSSLKG+SD EKY+KARKL I SIR +YTKDF ++D RQIAVAT
Sbjct: 177 NVKEFKYVFLHQSSSLKGKSDEEKYDKARKLTSKIDSIRESYTKDFKAKDVEARQIAVAT 236
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEL 723
YLID+LALRAGNEKDDDEADTVGCC+LKV +V PP+ L+FDFLGKDSI+Y N+V V
Sbjct: 237 YLIDRLALRAGNEKDDDEADTVGCCSLKVEHVSLSPPSSLEFDFLGKDSIRYQNSVVVNE 296
Query: 724 PVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG 783
VY AI F+ GKK+ DLFD+LDT+KLNAHLK+ M GLTAKVFRTYNAS TL+ L +
Sbjct: 297 EVYDAIHDFKKGKKEGVDLFDRLDTSKLNAHLKKYMQGLTAKVFRTYNASYTLETQLKET 356
Query: 784 TGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLD 843
G + K Y RANKEVAI+CNHQRTVSK HSAQM RL KI +LK + ++L DL
Sbjct: 357 LG-ATLNEKTAEYSRANKEVAILCNHQRTVSKGHSAQMERLEAKISELKTLREELATDLG 415
Query: 844 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 903
+ KKGKPP+ + KR E LE+K+AQT+A+I KM D+ KEDLKTVALGTSKI
Sbjct: 416 KVKKGKPPVHSTA----KRPPTAEQLEKKLAQTDARIAKMTLDLSVKEDLKTVALGTSKI 471
Query: 904 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
NY+DPRITVAWCKRHE+PIEK+FNKSLLAKFAWAM+V+P FRF
Sbjct: 472 NYMDPRITVAWCKRHEIPIEKVFNKSLLAKFAWAMNVEPNFRF 514
>gi|357467031|ref|XP_003603800.1| DNA topoisomerase I [Medicago truncatula]
gi|355492848|gb|AES74051.1| DNA topoisomerase I [Medicago truncatula]
Length = 921
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/459 (73%), Positives = 381/459 (83%), Gaps = 14/459 (3%)
Query: 500 QMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK-----MGK 554
++ EKKALKE+K KQEEKYMWAIVDGVKEKVGNFRVEPPGLF GRGEHPK +GK
Sbjct: 465 ELCVAEKKALKEQKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFIGRGEHPKVGTIIIGK 524
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
+K+RI PSD++INIGK PIPECPIPGESWKE+KH +T WLA W DPINP + K+V L
Sbjct: 525 VKRRIHPSDVSINIGKYTPIPECPIPGESWKEIKHKDTRIWLAKWRDPINPNKSKHVSLD 584
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
SSSLKGQSD+EKYEKAR LK YI +IRAAYT+ F S+D T++QIAVATY IDKLALRAG
Sbjct: 585 PSSSLKGQSDKEKYEKARMLKSYIGNIRAAYTEGFTSKDITKQQIAVATYFIDKLALRAG 644
Query: 675 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT 734
NEKDD+EADTVGCCTLK+ NV NKLKFDFLGKDSI+Y NTVEVELPVY AI +FQ
Sbjct: 645 NEKDDEEADTVGCCTLKIENVTAQGHNKLKFDFLGKDSIKYENTVEVELPVYNAILKFQK 704
Query: 735 GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKID 794
K DDLFDKLDT+KLNAHLKELMP LTAKVFRT+NAS TLD MLNK T DGDVA K D
Sbjct: 705 DKHPGDDLFDKLDTSKLNAHLKELMPNLTAKVFRTFNASFTLDDMLNKETKDGDVAEKKD 764
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMK 854
VYQ ANK+VAIICNHQR+VSK HSAQ+S+L EKI +L+ L++L++DL RA+K PL
Sbjct: 765 VYQHANKQVAIICNHQRSVSKNHSAQISKLNEKIVELQASLRELKIDLKRARKENSPLT- 823
Query: 855 DSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAW 914
SDGK KRNL PEA+E+K+ QT+AKIEKM+RDM TKEDLKTVALGTSKINYLDPRI+VAW
Sbjct: 824 SSDGK-KRNLNPEAIEKKITQTSAKIEKMQRDMHTKEDLKTVALGTSKINYLDPRISVAW 882
Query: 915 CKRHEVPIEKIFN-------KSLLAKFAWAMDVDPEFRF 946
CKRHEVPIEK++ K+LL KFAWAMDVDP FRF
Sbjct: 883 CKRHEVPIEKVWTSSLIFTGKTLLQKFAWAMDVDPNFRF 921
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 177/379 (46%), Positives = 228/379 (60%), Gaps = 46/379 (12%)
Query: 142 VKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD---DNDSE 198
V S S V+S V N+K S+ LK Q N + EE LK D D++ E
Sbjct: 62 VPSAKASAVESSVGNTKAST---SNLKT--QRNKDLINVNEENNSTKHLKEDRCEDSEEE 116
Query: 199 DDKPLSA-RLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPK-SNAGT 256
D PLSA ++K N+ NV + A +V K+ + DD++PLS+RFPK +N G
Sbjct: 117 DSIPLSAIKMKMNNGNVKK---------ATPDVLKKSYEDSDDDDIPLSARFPKNTNLGK 167
Query: 257 SGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDT 316
DS++ Q+ +S + VKRPL K S SS KK K+SD
Sbjct: 168 YSCNFDDSNK------------------QEMTSMLSVKRPLDKIDSL-HSSGKKSKLSDP 208
Query: 317 SKEVKVKQVTVKVEKKADDDDH--IPISQR---MKNSAPSVKKSVTNTAKATKSVSSSSN 371
+ + KQ T+K K ++++ IPIS+R + N + S+KK +TN K K ++ S
Sbjct: 209 ASSINAKQTTMKDAKAEEEEEDDDIPISRRRNKLVNKSSSLKK-LTNVTKVNKG-AAPSF 266
Query: 372 KINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEV 431
K K KK S++ KSTK+ SGDGQKKWTTLVHNGVIFPPPY PHGVK+LYK K V
Sbjct: 267 KKKSKLKKSGNKSKHVKSTKLQSSSGDGQKKWTTLVHNGVIFPPPYKPHGVKVLYKAKPV 326
Query: 432 NLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWH 491
LTPEQEEVATMFAV +D YMQ F++NFWNDWRKLLG+NHVIQNL+ CDF PIYDW
Sbjct: 327 TLTPEQEEVATMFAV-VDAKYMQNEIFKDNFWNDWRKLLGENHVIQNLKDCDFTPIYDWC 385
Query: 492 QEQKEKKKQMSSEEKKALK 510
Q +K+KKKQMSSE ++ +K
Sbjct: 386 QVEKDKKKQMSSESRQRVK 404
>gi|413921286|gb|AFW61218.1| hypothetical protein ZEAMMB73_011101 [Zea mays]
Length = 438
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/398 (79%), Positives = 355/398 (89%), Gaps = 1/398 (0%)
Query: 384 SQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATM 443
SQ+SK K+ PGSG G KKWTTL HNGVIFPPPY PHGVKMLY GK ++LTPEQEEVATM
Sbjct: 42 SQFSKIMKVPPGSGGG-KKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATM 100
Query: 444 FAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSS 503
FAVM DTDY KP F +NF+ DWRK+LGKNH+I+N E CDF PIY+WH +KE+KKQM++
Sbjct: 101 FAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTT 160
Query: 504 EEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
EEKK L+E+K KQEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSD
Sbjct: 161 EEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSD 220
Query: 564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
ITINIGK P+PECPIPGESWKEVKHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQS
Sbjct: 221 ITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQS 280
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D+EKYEK+RKLK +I IR YTKDF ++D TRRQIAVATYLIDKLALRAGNEKDDDEAD
Sbjct: 281 DKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEAD 340
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLF 743
TVGCCTLKV NV C+PPN+++FDFLGKDSI+Y NTVEVE VYKAI F+ GKK DLF
Sbjct: 341 TVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGQDLF 400
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
DK+DT++LNAHLK+LMPGLTAKVFRTYNASITLDG+++
Sbjct: 401 DKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGIVS 438
>gi|62320878|dbj|BAD93853.1| DNA topoisomerase I [Arabidopsis thaliana]
Length = 396
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/394 (80%), Positives = 349/394 (88%), Gaps = 1/394 (0%)
Query: 553 GKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVF 612
G+LKKRI P +IT+NIGK PIPECPI GE WKEVKHDNTVTWLAFW DPINPKEFKYVF
Sbjct: 1 GELKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVF 60
Query: 613 LAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
L A SSLKG SD+EKYEKAR L D+I +IR YTK+F ++D RQIAVATYLIDKLALR
Sbjct: 61 LGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALR 120
Query: 673 AGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF 732
AGNEKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQF
Sbjct: 121 AGNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQF 180
Query: 733 QTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVK 792
Q GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV K
Sbjct: 181 QAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQK 240
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL 852
I VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL
Sbjct: 241 IVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL 300
Query: 853 MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
+ SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITV
Sbjct: 301 -EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITV 359
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
AWCKRHEVPIEKIF KSLL KFAWAMDV+PE+RF
Sbjct: 360 AWCKRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 393
>gi|384250287|gb|EIE23767.1| DNA topoisomerase I [Coccomyxa subellipsoidea C-169]
Length = 554
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/555 (58%), Positives = 408/555 (73%), Gaps = 13/555 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
D + KW TLVH+GV+FPP Y HGV+MLY K V+LT EQEE+AT AVM T Y+++ +
Sbjct: 7 DKEAKWDTLVHSGVLFPPEYTSHGVQMLYDSKPVDLTLEQEEMATAMAVMTGTQYLERQQ 66
Query: 458 FRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
F +NFW DW+K+LG H I++L+ CDF PIY+WH ++E+KK + EEK +K+EK + E
Sbjct: 67 FLDNFWADWKKVLGPKHAIRDLKKCDFTPIYEWHMAERERKKALPKEEKDTMKKEKEEAE 126
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
K+ A+VD KE+VGNFRVEPPGLFRGRG+HPKMGK K+RI P DITINIGK V +PE
Sbjct: 127 AKFKHALVDDRKEQVGNFRVEPPGLFRGRGDHPKMGKFKRRIYPRDITINIGKGVAVPEH 186
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG+ WKEV+HDNTVTWLAFW DPI+ K++KYV+LAA+S+ K SD KYEKARKLKDY
Sbjct: 187 PYPGQKWKEVRHDNTVTWLAFWKDPISAKDYKYVWLAANSTFKSDSDLAKYEKARKLKDY 246
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR AY KD+ S D RQ+AVA Y IDKLALRAG+EKD+DEADTVGCCTLKV NVE
Sbjct: 247 IGGIRKAYEKDWESADMRTRQMAVALYFIDKLALRAGHEKDEDEADTVGCCTLKVENVEV 306
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND------DLFDKLDTAKL 751
+ N +KFDFLGKDSI+Y N V V V+ + QF K N DLFD +D L
Sbjct: 307 LEDNHIKFDFLGKDSIRYENEVAVHPKVHSLVRQFCKTTKDNKIKKPDMDLFDTMDATDL 366
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811
N LK+LM GL+ KVFRTYNAS+TLD +L+K + V K Y RANKEVAI+CNHQR
Sbjct: 367 NKRLKDLMDGLSVKVFRTYNASVTLDALLHKESTTSTVDEKKAEYDRANKEVAILCNHQR 426
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K H+ QM ++ K+ + + L L +L A+KGK +G + R + ++LER
Sbjct: 427 SVPKGHTGQMQKMEAKLLEHQQQLDALERELTAARKGKA-----FEGAKARPV--DSLER 479
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++K+E + K KEDLKTVALGTSKINYLDPRITVAWCK HEVPIEKIFNKSLL
Sbjct: 480 QIEKKRDALKKLELNAKVKEDLKTVALGTSKINYLDPRITVAWCKLHEVPIEKIFNKSLL 539
Query: 932 AKFAWAMDVDPEFRF 946
+KF W+MD++PE+RF
Sbjct: 540 SKFHWSMDIEPEWRF 554
>gi|159490590|ref|XP_001703256.1| DNA topoisomerase I [Chlamydomonas reinhardtii]
gi|158280180|gb|EDP05938.1| DNA topoisomerase I [Chlamydomonas reinhardtii]
Length = 586
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/575 (59%), Positives = 419/575 (72%), Gaps = 17/575 (2%)
Query: 387 SKSTKMLPGSG-DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFA 445
+K +K PGS GQ W TL H GV+FPP Y PHGVK LY GK V+LTP+QEEVATMFA
Sbjct: 14 AKRSKKEPGSSKSGQVMWKTLKHAGVLFPPEYEPHGVKPLYDGKPVDLTPDQEEVATMFA 73
Query: 446 VMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
VM +TDYM K F +NFW ++++LGK HVI++L+ CDF PIYDWH Q+E KK +S EE
Sbjct: 74 VMKETDYMNKKVFLDNFWEGFKEVLGKGHVIKDLKKCDFTPIYDWHMAQREAKKGISKEE 133
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
K +K+EK+++E KY A VDG E VGNFRVEPPGLFRGRGEHPKMGK+KKR+ P DIT
Sbjct: 134 KDRIKKEKDEKEAKYKVAYVDGRPEPVGNFRVEPPGLFRGRGEHPKMGKIKKRVYPRDIT 193
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
INIG++ P+PE P PG++WKEVKHD+TVTWLA+W D I+ K++KYVFL A+S+ K SD
Sbjct: 194 INIGENEPVPEHPYPGQTWKEVKHDHTVTWLAYWKDTISTKDYKYVFLGATSTFKADSDL 253
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
KYEKARKLK+ I +R Y +D+ S D +RQ+ VA Y IDKLALRAG+EKD+DEADTV
Sbjct: 254 AKYEKARKLKEIIVDVRKNYERDWDSSDQRKRQMGVAMYFIDKLALRAGHEKDEDEADTV 313
Query: 686 GCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF----QTGKK--QN 739
GCCTLKV N+E + NK+KFDFLGKDSI+Y N VEV+ VYK + +F TGK+ Q
Sbjct: 314 GCCTLKVENIEIMGDNKVKFDFLGKDSIRYENIVEVDPRVYKNLEKFKRIDHTGKRKQQG 373
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN--KGTGDGDVAV------ 791
D LF+ D LN LK +M GL+ KVFRTYNASI LD +L+ + T G
Sbjct: 374 DQLFETFDAQDLNKELKNIMDGLSVKVFRTYNASIVLDRLLSEWEATKKGHSTAQTVDQK 433
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
K+D Y ANKEVAI+CNHQR+V KTH+ QM ++ EK+ + L +L +L A+KGK
Sbjct: 434 KVD-YDIANKEVAILCNHQRSVPKTHTNQMEKIQEKLAGMNKELAELEDELRAAQKGKAE 492
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
K ++ + P AL K+ + I K+E ++KEDLKTVALGTSKINY+DPRIT
Sbjct: 493 -NKKANKCGAPTILPWALNSKIDKKKQAIAKVELQARSKEDLKTVALGTSKINYMDPRIT 551
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VAWCKR+EVPIEKIFNKSLLAKF WAMDVDP FRF
Sbjct: 552 VAWCKRNEVPIEKIFNKSLLAKFNWAMDVDPTFRF 586
>gi|307104172|gb|EFN52427.1| hypothetical protein CHLNCDRAFT_36846 [Chlorella variabilis]
Length = 532
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/543 (61%), Positives = 405/543 (74%), Gaps = 31/543 (5%)
Query: 424 MLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCD 483
MLY G V+LTPEQEEVAT FAVM +TDYM+K F NFW +R++LG HVI++L+ CD
Sbjct: 1 MLYDGVPVDLTPEQEEVATFFAVMKETDYMKKDTFLNNFWEGFREVLGHGHVIKSLDKCD 60
Query: 484 FKPIYDWHQEQKEKKKQMS-----SEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVE 538
F P Y+WH ++E KK +S S+EK+ LK+EK++ E KY +A+VDG +E VGNFRVE
Sbjct: 61 FLPFYNWHMAEREPKKNLSKEGGASQEKEKLKKEKDEAEAKYKYALVDGRQEMVGNFRVE 120
Query: 539 PPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAF 598
PPGLFRGRGEHPKMGK+KKRI P DITINIG+ VPIP P G+ WKEVKHD +VTWLAF
Sbjct: 121 PPGLFRGRGEHPKMGKIKKRIYPRDITINIGEGVPIPGHPFTGQQWKEVKHDKSVTWLAF 180
Query: 599 WNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQ 658
W DP+N KE+KYVFLAA+S+ K +SD +KYEKARKLKD+I IR YT+++ SRD RQ
Sbjct: 181 WRDPVNTKEYKYVFLAATSTWKSESDLQKYEKARKLKDFIGGIRDTYTRNWDSRDRAERQ 240
Query: 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNT 718
+A A Y IDKLALRAG+EKD+DEADTVGCCTLKV NVEC PPN +KFDFLGKDSI+Y NT
Sbjct: 241 MATALYFIDKLALRAGHEKDEDEADTVGCCTLKVENVECAPPNHIKFDFLGKDSIRYENT 300
Query: 719 VEVELPVYKAIGQF----QTG--KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 772
V+VE V+K + F Q+G KK+ D LF+ D LN LK+LM GL+ KVFRTYNA
Sbjct: 301 VDVEDKVFKNVELFKRENQSGKPKKEGDQLFECFDAQDLNVRLKDLMEGLSVKVFRTYNA 360
Query: 773 SITLDGML---------NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
SITLD +L T +G VA Y RANKEVAI+CNHQR+V K H QM +
Sbjct: 361 SITLDRLLAEGEEAASAEAETVEGRVA----DYNRANKEVAILCNHQRSVPKAHENQMEK 416
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EK++ ++ +KDL+ DL RAK GK K DGK R E + K+ + A++ KM
Sbjct: 417 LQEKLDAVRQEVKDLQADLKRAKAGK----KGEDGKVLRE---EVVAGKLEKKQAQLLKM 469
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE 943
E K+KEDLKTVALGTSKINYLDPRITVAWCKR+EVPIEK+FNKSLL+KF WAMDV+PE
Sbjct: 470 EITAKSKEDLKTVALGTSKINYLDPRITVAWCKRNEVPIEKVFNKSLLSKFLWAMDVEPE 529
Query: 944 FRF 946
FRF
Sbjct: 530 FRF 532
>gi|452824469|gb|EME31472.1| DNA topoisomerase I [Galdieria sulphuraria]
Length = 780
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/581 (52%), Positives = 403/581 (69%), Gaps = 33/581 (5%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
D KWTTL H+GV+FPP Y+PH +LY+GKE+ L+P+ EEVAT FA L T+Y++KP+
Sbjct: 201 DDTIKWTTLSHSGVLFPPEYVPHNKPILYRGKEIYLSPKAEEVATFFAQKLATEYVKKPQ 260
Query: 458 FRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
FR+NFW D+++ L + +++L+ +F PIY+ + QK KK ++S EKKA++EE+ +
Sbjct: 261 FRKNFWEDFQQHLSNDEKKKLKSLDEINFTPIYEHLEAQKNAKKALTSAEKKAIREEEQE 320
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+ +KY AIVDG +EKVGNFRVEPPGLF GRGEHP MGK+KKRI P DITINIG+D P+P
Sbjct: 321 KVKKYTVAIVDGKEEKVGNFRVEPPGLFLGRGEHPLMGKVKKRIMPEDITINIGEDAPVP 380
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
ECPI G W ++ H+N VTWLA W D I +KYV+L+A S KGQSD++KYEKARKLK
Sbjct: 381 ECPIAGHRWGQIIHNNKVTWLAGWKDSITGG-YKYVWLSAGSRFKGQSDQQKYEKARKLK 439
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
+YI IR YTK S RQ + A Y ID+LALR GNEKD+DEADTVGCC+L+V ++
Sbjct: 440 NYIDEIRKDYTKGLQSDSLEERQRSTALYFIDRLALRVGNEKDEDEADTVGCCSLRVEHI 499
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHL 755
PN ++FDFLGKDSI+Y+NTV V+ PV+ + +F GKK D++FDKL LN HL
Sbjct: 500 TLHDPNAVEFDFLGKDSIRYINTVTVDGPVFYNLKEFVRGKKPEDEIFDKLTVQGLNDHL 559
Query: 756 KELMPGLTAKVFRTYNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVS 814
K LMPGL+AKVFRTYNASITL +L++ + D+ K+ Y +ANKEVAI+CNHQRT+
Sbjct: 560 KTLMPGLSAKVFRTYNASITLARLLSERKFESEDLNNKLTFYNQANKEVAILCNHQRTLP 619
Query: 815 KTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK--------------------PPLMK 854
+H QM+RL K+++ L +L L +AK+ K + +
Sbjct: 620 VSHEQQMNRLQSKLDEALEWLHELEQALKKAKRDKKDSVEVVQYVRPKPNFRNDMTQIER 679
Query: 855 DSDGKRKRNLAPEALERKMAQTN---------AKIEKMERDMKTKEDLKTVALGTSKINY 905
+++ KR L E+ R+M +N ++EK+ DM KE+LK VALGTSKINY
Sbjct: 680 EAERKRVAELPRESKVRQMKTSNLPSQIEKAEQRVEKIRLDMSMKEELKNVALGTSKINY 739
Query: 906 LDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
LDPRITVAWCK+++VPIEKIF+K+LL KF W+M+ +F F
Sbjct: 740 LDPRITVAWCKKNQVPIEKIFSKTLLTKFLWSMESSEDFCF 780
>gi|255070017|ref|XP_002507090.1| DNA topoisomerase I [Micromonas sp. RCC299]
gi|226522365|gb|ACO68348.1| DNA topoisomerase I [Micromonas sp. RCC299]
Length = 635
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 305/638 (47%), Positives = 421/638 (65%), Gaps = 47/638 (7%)
Query: 332 KADDDDHIPISQRMKNSAPSVKKSVTNTAK-ATKSVSSSSNKINKKTKKVIKNSQYSKST 390
++D DD +P+S R+ + +K+++N + A K SS + N K I +
Sbjct: 22 ESDSDDDVPLSARVPGATTGKRKNMSNRNRPAHKRKSSDTEDDNSSDDKPIGSLVDISDR 81
Query: 391 KMLPGSGDGQKK------------------WTTLVHNGVIFPPPYLPHGVKMLYKGKEVN 432
K G +KK W+TL HNGV+FPPPY HG+ ++Y G +V
Sbjct: 82 KSTTAGGSAKKKTKRADHEPWRAKRGAKQMWSTLEHNGVVFPPPYQAHGIPLVYDGHDVK 141
Query: 433 LTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDW 490
L P +EEVAT FAVM DTDY QK F +NF++ ++K L G + I++ + CDF IY W
Sbjct: 142 LLPHEEEVATFFAVMKDTDYAQKDIFVKNFFDGFKKTLRGGPHGFIKDFKKCDFTKIYMW 201
Query: 491 HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 550
+ +++E+KK +S+EEK+ +K E+ EEKY WA +DG +E+VGN++VEPPGLFRGRGEHP
Sbjct: 202 NLQERERKKSVSAEEKRKVKAEQAAAEEKYCWATIDGRRERVGNYKVEPPGLFRGRGEHP 261
Query: 551 KMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKY 610
KMG++KKRI P DI INIGK +PE P+PG WK++ H+NTVTWL WND IN K++KY
Sbjct: 262 KMGRVKKRIMPEDIIINIGKGAKVPE-PLPGHKWKQIIHNNTVTWLCGWNDTINTKDWKY 320
Query: 611 VFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLA 670
V A+SS+K +SD +KYEKARKLK + +IR Y K S +Q+AV TYL+DKLA
Sbjct: 321 VQFGATSSIKAESDIQKYEKARKLKLAVDAIRRDYFKKMKSGSVLEQQLAVTTYLVDKLA 380
Query: 671 LRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIG 730
LRAG EKDDD ADTVG CTL+VG+++ +PP+ +KFDFLGKDSI+Y+ EV+ V+ A+
Sbjct: 381 LRAGGEKDDDLADTVGVCTLRVGHIDFLPPSTIKFDFLGKDSIRYLQEHEVDPLVFHAMQ 440
Query: 731 QFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT--GDGD 788
+F GKK++ D+FD +D K+N HL+ LMPGLT KVFRTYNAS TL+ +L + T GD
Sbjct: 441 RFCKGKKKDQDIFDHIDPTKVNKHLQTLMPGLTIKVFRTYNASYTLNKLLKETTPAGDST 500
Query: 789 VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG 848
V +K Y ANKEVA++CNHQ+ VSK H AQM +L +K + ++ + LR D
Sbjct: 501 VPMKKAAYDAANKEVAVLCNHQKGVSKAHDAQMEKLQDKKKIIEKEIAALRRD------- 553
Query: 849 KPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDP 908
KD++ + R L ++ K+E MK K++LK+V+LGTSKINY+DP
Sbjct: 554 ----KKDTNKAKIRTL------------KERLSKLELQMKMKDELKSVSLGTSKINYMDP 597
Query: 909 RITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
RIT+AWCK ++VP ++ K+L+ KF WAM+V+P+F F
Sbjct: 598 RITIAWCKHNDVPPPTVYTKALVEKFNWAMEVEPDFDF 635
>gi|357467017|ref|XP_003603793.1| DNA topoisomerase I [Medicago truncatula]
gi|355492841|gb|AES74044.1| DNA topoisomerase I [Medicago truncatula]
Length = 1009
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 294/417 (70%), Positives = 333/417 (79%), Gaps = 26/417 (6%)
Query: 531 KVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHD 590
KVGNFRVEPPGLF GRGEHPK+GK+K+RI PSD++INIGK PIPECPIPGESWKE+KH
Sbjct: 618 KVGNFRVEPPGLFIGRGEHPKIGKVKRRIHPSDVSINIGKYAPIPECPIPGESWKEIKHK 677
Query: 591 NTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV 650
+T WLA SSLKGQSD+EKYEKAR L YI +IRAAYTK F
Sbjct: 678 DTRIWLA-----------------KCSSLKGQSDKEKYEKARMLNSYIGNIRAAYTKGFT 720
Query: 651 SRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGK 710
S+D T++QIAVATY IDKLALRAGNEKDD+EADTVGCCTLKV NV NKLKFDFLGK
Sbjct: 721 SKDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENVTAQGHNKLKFDFLGK 780
Query: 711 DSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTY 770
DSI+Y TVEVELPVY AI +FQ K + L +++ +NAHLKELMP LTAKVFRT+
Sbjct: 781 DSIKYEYTVEVELPVYNAILKFQ---KVSAFLSYQIN---VNAHLKELMPNLTAKVFRTF 834
Query: 771 NASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIED 830
NAS TLD MLNK T DGDVA K DVYQ ANK+ AIICNHQR+VSK HSAQ+S+L EKI +
Sbjct: 835 NASFTLDDMLNKETKDGDVAEKRDVYQHANKQGAIICNHQRSVSKNHSAQISKLNEKIVE 894
Query: 831 LKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTK 890
L+ L++L++DL +A+K K PL SDGK KRNL PEA+E+K+ QT+AKIEKM+RDM TK
Sbjct: 895 LQAFLRELKIDLKKARKEKSPLT-SSDGK-KRNLNPEAIEKKITQTSAKIEKMQRDMHTK 952
Query: 891 EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN-KSLLAKFAWAMDVDPEFRF 946
EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF K+ L KFAWAMDVDP FRF
Sbjct: 953 EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTGKTPLQKFAWAMDVDPNFRF 1009
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 192/473 (40%), Positives = 259/473 (54%), Gaps = 95/473 (20%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDK 104
MAVEAS DGP FK +++AS+ N E+++ ST++ + + K+
Sbjct: 1 MAVEAS-------------DGPVTFK-SSSASKSNQLYSEMRK---STSHSHDERSYKNT 43
Query: 105 TTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLD 164
+ VSSS Q +++ + K PS S V+S V N+K S+
Sbjct: 44 SDVSSSN---------GQTSSSQNGKVVPSAKA----------SAVESSVGNTKAST--- 81
Query: 165 DRLKQSPQHNALAVVKKEEIKDGNGLKSD---DNDSEDDKPLSA-RLKGNSKNVNQGIGA 220
LK Q N + EE LK D D++ ED PLS+ ++K N+ NV +
Sbjct: 82 SNLKT--QRNKDLINVNEENNSTKHLKEDRCEDSEEEDSIPLSSIKMKMNNGNVKK---- 135
Query: 221 SKADAAISEVNVKT--DPEDSDDEVPLSSRFPK-SNAGTSGAKPIDSDEKKPLASKVQQN 277
A +V K+ D +D DD++PLS+R PK +N G S DS++
Sbjct: 136 -----ATPDVLKKSYEDSDDDDDDIPLSARLPKNTNLGKSRCNFDDSNK----------- 179
Query: 278 GSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDD 337
Q+ +S + KR L K S SS KK K+SD + + KQ T+K + KA++++
Sbjct: 180 -------QEMTSMLSAKRSLDKIDSL-HSSGKKSKLSDPASSINAKQKTMKCDAKAEEEE 231
Query: 338 H---IPISQR---MKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTK 391
IPIS+R + N + S+KK +TN K K ++ S K K KK S++ KSTK
Sbjct: 232 EDDDIPISRRRNKLVNKSSSLKK-LTNVTKVNKG-AAPSFKKKSKLKKSGNKSKHVKSTK 289
Query: 392 MLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
+ SGDGQKKWTTLVHNGVIFPPPY PHGVK+LYKGK V LTPEQEE +
Sbjct: 290 LQSSSGDGQKKWTTLVHNGVIFPPPYKPHGVKVLYKGKPVTLTPEQEESS---------- 339
Query: 452 YMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MQ F++NFWNDWRKLLG+NHVIQNL+ CDF PIYDW Q +K+KKKQMSSE
Sbjct: 340 -MQNEIFKDNFWNDWRKLLGENHVIQNLKDCDFTPIYDWCQVEKDKKKQMSSE 391
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Query: 500 QMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK-VGNFRVE 538
++ EKKALKE+K KQEEKYMW IVDGVKEK VG R+E
Sbjct: 508 ELCVAEKKALKEQKMKQEEKYMWVIVDGVKEKFVG--RIE 545
>gi|308810078|ref|XP_003082348.1| putative DNA topoisomerase I (ISS) [Ostreococcus tauri]
gi|116060816|emb|CAL57294.1| putative DNA topoisomerase I (ISS) [Ostreococcus tauri]
Length = 783
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 285/546 (52%), Positives = 372/546 (68%), Gaps = 25/546 (4%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W TL HNGV+FPPPY PHGV + Y G++V L P +EE+A FAVM DTDY QK F +NF
Sbjct: 237 WKTLEHNGVVFPPPYEPHGVPLTYDGQDVKLLPHEEEIAGFFAVMKDTDYAQKAVFVKNF 296
Query: 463 WNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKY 520
+ +++ L G + I + CDF +Y+ + +E+KKQM+SEEKK +K EK+K EE Y
Sbjct: 297 MDGFKEALANGPHAFITDFRKCDFTKMYNHFAKIREEKKQMTSEEKKRIKAEKDKAEEMY 356
Query: 521 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIP 580
WA +DG +EKVGNFR+EPPGLFRGRGEHPKMGK+K+R+ P DITINIGKD +P P P
Sbjct: 357 TWATIDGRREKVGNFRIEPPGLFRGRGEHPKMGKIKRRVMPEDITINIGKDARVPPPP-P 415
Query: 581 GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHS 640
G SWK V H++T TWLA WND IN K++KYV A+S++K +SD++KYEKAR L +I
Sbjct: 416 GHSWKAVIHNDTATWLAGWNDVINVKDWKYVQFGATSTVKAESDQKKYEKARSLHKFIEK 475
Query: 641 IRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPP 700
IRA Y ++ S Q+AV TYL+DKLALRAG EKD+D ADTVG CTL+ G+++ +
Sbjct: 476 IRADYKRNMQSESREMAQLAVTTYLVDKLALRAGGEKDEDLADTVGVCTLRAGHIKFMED 535
Query: 701 NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMP 760
N ++FDFLGKDSIQY+ +++ YK + +F K + D+FD +D +K+NAHL+ LMP
Sbjct: 536 NVIEFDFLGKDSIQYLQQHKIDEVAYKCLQRFVKDKGPDVDIFDLIDPSKVNAHLQTLMP 595
Query: 761 GLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQ 820
GLT KVFRTYNASITLD +L + K Y ANKEVAI+CNHQ+ VSK H Q
Sbjct: 596 GLTIKVFRTYNASITLDSLLADTDTNLTTLQKKAKYDAANKEVAILCNHQKGVSKAHDEQ 655
Query: 821 MSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKI 880
M +L +K +DL + D MK + + + AL+ + A
Sbjct: 656 MGKLNDKKKDLAKQITD---------------MKKNKDDKNQKKKLTALKERAA------ 694
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV 940
K+ M+ KE+LKTV+LGTSKINYLDPRIT++WCKRHEVP +F K+L+ KF WAMD
Sbjct: 695 -KLAIQMEMKEELKTVSLGTSKINYLDPRITLSWCKRHEVPPPTVFTKALIDKFHWAMDC 753
Query: 941 DPEFRF 946
D +F+F
Sbjct: 754 DMDFKF 759
>gi|303270975|ref|XP_003054849.1| DNA topoisomerase I [Micromonas pusilla CCMP1545]
gi|226462823|gb|EEH60101.1| DNA topoisomerase I [Micromonas pusilla CCMP1545]
Length = 685
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 292/555 (52%), Positives = 385/555 (69%), Gaps = 28/555 (5%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
G +K+W TL H+GV+FPPPY P+ V + Y G ++ L P +EE A FAVM DTDY Q
Sbjct: 156 GKKGTKKQWKTLEHHGVVFPPPYEPNKVPLTYDGVDIVLLPHEEEAANFFAVMKDTDYAQ 215
Query: 455 KPKFRENFWNDWRKLL-GKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
K F +NFW ++K+L G H I+ + CDF +Y WH +++EKKK +S+E+KK K
Sbjct: 216 KDVFVKNFWEGFKKVLRGGPHAMTIKEFKKCDFTKMYMWHLKEREKKKAISNEDKKKAKA 275
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
K+ +EEKY WA++DG +E+VGNFRVEPPGLFRGRGEHPKMG++KKRI P DITINIGK
Sbjct: 276 AKDAEEEKYNWAVIDGRRERVGNFRVEPPGLFRGRGEHPKMGRIKKRIMPEDITINIGKG 335
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
VP P+ P PG WK+V H++TVTWL WND IN K++KYV A SS+K +SD +KYEKA
Sbjct: 336 VPAPD-PGPGHKWKDVIHNDTVTWLCGWNDTINTKDWKYVQFGAMSSIKAESDIQKYEKA 394
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
RKLK + +IR Y K + D +Q+AV TYL+DKLALRAG EKD+D ADTVG CTL+
Sbjct: 395 RKLKLAVDAIRRDYFKKMKTGDMLAKQLAVTTYLVDKLALRAGGEKDEDLADTVGVCTLR 454
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
VG+VE I P+ LK DFLGKDSI+Y+ EV+ V++A+ +F GKK ++D+FD++D +K+
Sbjct: 455 VGHVEFITPSTLKLDFLGKDSIRYLQEHEVDPLVFEAMQKFCKGKKPDNDIFDQIDPSKV 514
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811
N HL+ LMPGLT KVFRTYNAS L+ +L V +K Y ANKEVA++CNHQ+
Sbjct: 515 NKHLQTLMPGLTIKVFRTYNASFVLNKLLKDTNPRDTVPLKKAAYDAANKEVAVLCNHQK 574
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
SK H AQM +L +K + ++ LK LR D ++ K
Sbjct: 575 GESKAHGAQMEKLVDKKKAMEKELKALRQDKEKNKS------------------------ 610
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
K++ ++ K+E MK KEDLKTV+LGTSKINYLDPRIT+AWCKR+EVP +F ++L+
Sbjct: 611 KISTMKERLAKLELQMKMKEDLKTVSLGTSKINYLDPRITIAWCKRNEVPPPTVFTRALV 670
Query: 932 AKFAWAMDVDPEFRF 946
KF W+M+V+P+F F
Sbjct: 671 EKFNWSMEVEPDFDF 685
>gi|449017694|dbj|BAM81096.1| DNA topoisomerase [Cyanidioschyzon merolae strain 10D]
Length = 706
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 303/688 (44%), Positives = 426/688 (61%), Gaps = 77/688 (11%)
Query: 335 DDDHIPISQRMKNSAPSVKKSVT------------NTAKATKSVSSSSNKI--------- 373
D D IP+S+ + NS SV + V+ AK + S + S +++
Sbjct: 5 DPDEIPLSELLGNSGESVPRVVSVARQGGFGAPSIQVAKKSSSAALSEDELPLALLIGTE 64
Query: 374 -----NKKTKKV-------------IKNSQYSKSTKMLPGSG-----DGQKKWTTLVHNG 410
+++ KV +K ++ K+ K+ S D KW +L HNG
Sbjct: 65 RKKECSRRKGKVEPCRKAPKRKCERMKAEKHRKAKKLQATSTKHRAEDESIKWCSLEHNG 124
Query: 411 VIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL 470
V+FPP Y PHG +LY G E+ L PE EEVAT +A L T Y++K FR+NF++D+RK L
Sbjct: 125 VLFPPEYEPHGRPLLYDGCEIALPPEAEEVATFYASKLGTVYLEKETFRKNFFDDFRKTL 184
Query: 471 GKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGV 528
+ I LE CDF I ++ E KE+K+ M ++K L+E + ++ Y AIVDG
Sbjct: 185 PVDLRKRIVKLEHCDFSRIREYLDELKERKQSMPPSKRKELREAEAQRVAHYTVAIVDGR 244
Query: 529 KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK 588
KEKV N+RVEPPGLF GRG+HP MG++K+RI P D+T+N+G+D PIP CP G W +
Sbjct: 245 KEKVANYRVEPPGLFLGRGDHPLMGRVKRRIFPEDVTLNLGRDAPIPPCPFKGHDWGSIV 304
Query: 589 HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKD 648
H+ VTWLA W DPI+ E+KYV+L+ASS K SD+EK+EKA++L +I IR YTK
Sbjct: 305 HNQRVTWLACWRDPIS-DEYKYVWLSASSHFKAMSDQEKFEKAQQLSKHITKIRNEYTKG 363
Query: 649 FVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFL 708
S D +Q +VA YLIDKLALR GNEK +DEADTVGCC+L+V ++ PN ++ DFL
Sbjct: 364 LESADRHTQQRSVALYLIDKLALRVGNEKGEDEADTVGCCSLRVEHITLQEPNIVQLDFL 423
Query: 709 GKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
GKDS++Y N V VE V+ + +F GK+ +D++FD+L +LN +LK LMPGL+AKVFR
Sbjct: 424 GKDSMRYFNRVRVEALVFHRLREFLKGKRVSDNVFDELKVEELNDYLKSLMPGLSAKVFR 483
Query: 769 TYNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 827
TYNAS TLD +L+ G D+ ++ Y ANK+VA++CNHQR++ KTHS + RL +K
Sbjct: 484 TYNASYTLDKLLHSVKTPGPDIHSRLLFYNEANKDVAVLCNHQRSLPKTHSLMLERLRDK 543
Query: 828 IEDLKGVLKDLRVDLDRAK----------KGKPPLMK----DSDGKRKR----------- 862
+E+ + L+ L++ +A+ + + P+++ S +RKR
Sbjct: 544 LEESRAYLEALKMARGKAQASPDSRAQVTRWRRPVVEIPEDCSLAERKRIREEAEKRPKE 603
Query: 863 ----NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
N+ ++ R +AQT KI ++E D+KT++ L TV+L TSKINYLDPRITVAWCKRH
Sbjct: 604 KQVVNMGLASITRGIAQTQEKIRRLEADLKTRDSLATVSLSTSKINYLDPRITVAWCKRH 663
Query: 919 EVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
EVPIE+IF ++L KF W+M V +FRF
Sbjct: 664 EVPIERIFPRALQEKFMWSMGVSEDFRF 691
>gi|424513433|emb|CCO66055.1| DNA topoisomerase I [Bathycoccus prasinos]
Length = 850
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/562 (51%), Positives = 390/562 (69%), Gaps = 36/562 (6%)
Query: 395 GSGDGQK-KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
G+G G + WT L H+GV+FPP Y PHGV + Y GK+V+L P +EEVAT FAVM +TDY
Sbjct: 301 GNGKGSEIMWTQLEHHGVLFPPEYEPHGVPLTYDGKDVHLEPHEEEVATFFAVMKETDYA 360
Query: 454 QKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
KP F++NF + ++++L GKN + + E C+F+ IYDW ++EK K +SEEKK +K
Sbjct: 361 FKPVFQQNFMDGFKRILKNGKNAHVTDFEKCNFQKIYDWDLARREKVKARTSEEKKQIKL 420
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
+K+K EEKYMWA ++G +E+VGNFRVEPPGLFRGRGEHPKMG++K+RIQP DI INIGKD
Sbjct: 421 DKDKAEEKYMWATMNGKREQVGNFRVEPPGLFRGRGEHPKMGRIKRRIQPEDIIINIGKD 480
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
+PE P G WKEV+HD TVTW+A WND IN K++KYV A+SS+K +SD++K+EKA
Sbjct: 481 AKVPEAPA-GHRWKEVRHDQTVTWMAGWNDSINTKDWKYVQFGATSSVKSESDKQKFEKA 539
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R L ++I IR Y K+ + Q+AV TYL+DKLALRAG EKD+D ADTVG TL+
Sbjct: 540 RTLHEHIGKIRDDYRKNMRKDNKETAQLAVTTYLVDKLALRAGGEKDEDLADTVGVTTLR 599
Query: 692 VGNVECIPPN------KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDK 745
VG+++ + P K++FDFLGKDSI+Y +E Y + +F KK+++D+FDK
Sbjct: 600 VGHLKFMGPEDDHPYPKIEFDFLGKDSIRYHQEHAIERVAYDCLKRFCKNKKEDEDVFDK 659
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVA 804
+D +K+N+HL+ LMPGLT KVFRTYNASITL +L + T V + Y ANKEVA
Sbjct: 660 IDPSKVNSHLQTLMPGLTIKVFRTYNASITLYRLLEETTKPKAAVPIMKSTYDEANKEVA 719
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
I+CNHQ+ SK H A M +L +K ++L+ +K+LR K +N
Sbjct: 720 ILCNHQKGESKQHQAGMDKLNDKKKELEKEMKELR-------------------KADKN- 759
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
+K+ +I+K++ M+TKE LKTV+LGTSKINYLDPRIT+AWCK+HEVP+
Sbjct: 760 -----HKKLPSLKERIQKLKLQMETKESLKTVSLGTSKINYLDPRITIAWCKKHEVPLPT 814
Query: 925 IFNKSLLAKFAWAMDVDPEFRF 946
++ K+L+ KF WAM +P++ F
Sbjct: 815 VYTKALVQKFNWAMCEEPDYVF 836
>gi|403411987|emb|CCL98687.1| predicted protein [Fibroporia radiculosa]
Length = 893
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 355/880 (40%), Positives = 484/880 (55%), Gaps = 140/880 (15%)
Query: 166 RLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSA----RLKGNSKNVNQGIGAS 221
R+K P A+ +K+ ++SD++ S +D PL++ R + +N + A+
Sbjct: 55 RVKSEPMTPVRAIKRKK-------IQSDNSSSGEDAPLASSPAKRAVSGAVRMNGALEAT 107
Query: 222 KADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTS 281
+ K D+DD+VP++ ++ +GA+P P +V+Q
Sbjct: 108 TTTTNGKKPARKAVNSDADDDVPVTKGKRATDGNGNGARP-------PARKRVKQE---R 157
Query: 282 RETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADD----DD 337
RE+ S S K P++K S K K+ K E ADD DD
Sbjct: 158 RESSLNSESDDDK-PIRKVPS------------------KAKRKVKKEESDADDESPSDD 198
Query: 338 HIPI-----------SQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQY 386
+ PI Q+ K S+ + K ++ K KK ++ + +
Sbjct: 199 NKPIKNASPKAAAKRGQKEKESSGTPAPKKKKATKVKDEEGDAAPKRGKKKEE--DDEEV 256
Query: 387 SKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMF 444
+ + GDG +KW TL HNGV FPPPY LP VKM Y GK VNL P EEVA +
Sbjct: 257 FRWWEQQDPDGDGTQKWQTLEHNGVYFPPPYEPLPSNVKMRYDGKPVNLPPASEEVAGFY 316
Query: 445 AVMLDTDYMQKPKFRENFWNDWRKLLGKN------HVIQNLEGCDFKPIYDWHQEQKEKK 498
A +L++D+ + F +NF++DW+ +L K+ +++ L CDF+P++++ + +K KK
Sbjct: 317 AALLESDHAKDKTFNKNFFDDWKNILQKHPPRDGTKIVEFLR-CDFRPMFEYFEAEKAKK 375
Query: 499 KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 558
K M+S EKK K K+ E Y ++DG KEKVGNFRVEPPGLFRGRG+HPK G LK R
Sbjct: 376 KAMTSAEKKEAKVAKDALEAPYTHCVLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKLR 435
Query: 559 IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618
++P DITINIG+ +P P+ +PG+ WK+V HDNTVTWLA W + +N KYVFLAA SS
Sbjct: 436 VRPEDITINIGEGIPTPKPNVPGK-WKDVMHDNTVTWLATWTENVN-GNHKYVFLAAGSS 493
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
+KGQSD +K+EKAR+LK+++ IR YT D S+ RQ A A Y ID+LALRAGNEK
Sbjct: 494 IKGQSDMQKFEKARELKNHVDRIRKDYTADLKSKLMADRQRATAMYFIDRLALRAGNEKG 553
Query: 679 DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
+DEADTVGCC+L+ +V PPN+L FDFLGKDSI+Y N V V+ VYK I + GK
Sbjct: 554 EDEADTVGCCSLRCEHVTLQPPNQLVFDFLGKDSIRYYNQVTVDDQVYKNIRICKDGKND 613
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQ 797
+D+LFD++ T+ LN HL M GLTAKVFRTYNASIT L++GT + G V K++ Y
Sbjct: 614 DDNLFDRVSTSSLNKHLASYMKGLTAKVFRTYNASITFQEQLDQGTPEKGTVQEKLNAYN 673
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR------------------ 839
AN+ VAI+CNHQR V KTH M ++ EK+ K LR
Sbjct: 674 HANRMVAILCNHQRAVPKTHEQSMGKMREKLRGFKYERMKLRHALFAIDAKYKKKQKYAE 733
Query: 840 --VDLD-----------------------------RAKKGKPPL---------------- 852
DLD A++GK PL
Sbjct: 734 DESDLDDDGVAEHEDSMKAKEIEKAEKKFQKDNEKAAEEGKEPLEDSVLKDKRKEIEEEF 793
Query: 853 --MKDSDGKRK----RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYL 906
+K G RK R E +E + + + K++ + M+ +E K VALGTSKINYL
Sbjct: 794 KRLKKERGTRKAVLKRERPAEKIEEAIEKLDDKMKTFKLQMEDREAGKEVALGTSKINYL 853
Query: 907 DPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
DPRIT AWCK HEVPIEKIF+K+LL KF WAM+VD E++F
Sbjct: 854 DPRITAAWCKTHEVPIEKIFSKTLLTKFPWAMEVDGEWKF 893
>gi|336384149|gb|EGO25297.1| DNA topoisomerase I [Serpula lacrymans var. lacrymans S7.9]
Length = 888
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/631 (47%), Positives = 393/631 (62%), Gaps = 81/631 (12%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
+GDG++KW TL H+GVIFPPPY LP VKM Y GK V+L P EEVA +A ML+T++
Sbjct: 260 ANGDGEEKWQTLEHSGVIFPPPYEPLPSHVKMKYNGKPVDLDPIAEEVAGFYAAMLETEH 319
Query: 453 MQKPKFRENFWNDWRKLLG----KNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKK 507
Q F +NF+ DW+K+L +N + I N E CDF+P+Y++ + +K KKK M++ EKK
Sbjct: 320 AQDNTFNKNFFEDWKKVLKDAPPRNKIKITNFEHCDFRPMYEYFEGEKAKKKAMTTAEKK 379
Query: 508 ALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
LK++K+ EEKY+ ++DG KEKVGNFRVEPPGLFRGRG+HPK G LK R++P DITIN
Sbjct: 380 ELKKQKDAYEEKYVTCVLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKFRVRPEDITIN 439
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
IG + IP +PG +WK++ HD TVTWLA W + IN KYVFLAA SSLKGQSD K
Sbjct: 440 IGAESHIPIPNMPG-TWKQIIHDKTVTWLANWVENINGNH-KYVFLAAGSSLKGQSDMSK 497
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 687
+EKAR+LK ++ IR Y D S+ RQ A A Y ID+LALRAGNEK +DEADTVGC
Sbjct: 498 FEKARELKKHVDRIRQDYNADLRSKIMADRQRATAMYFIDRLALRAGNEKGEDEADTVGC 557
Query: 688 CTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
C+L+ +V PN + FDFLGKDSI+Y N V VE V+K I F+ K+ ND+LFD+++
Sbjct: 558 CSLRCEHVTLEAPNFIIFDFLGKDSIRYYNRVAVEFQVFKNIRYFKENKEDNDNLFDRVN 617
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAII 806
T LN HL+ M GLTAKVFRTYNASIT L++ T + V K++ Y AN+ VAI+
Sbjct: 618 TTLLNKHLQSYMKGLTAKVFRTYNASITFQEQLDESTPENATVQEKLNAYNHANRMVAIL 677
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV-------------------------- 840
CNHQR+ KTH M ++ +++ K LR
Sbjct: 678 CNHQRSAPKTHEQSMEKMRDRLRSFKYERMKLRHVLFNADPKYKKKKPYANDESDLDDDW 737
Query: 841 -----------DLDRAKK------------GKPPL----MKDS----DGKRKRNLAPEAL 869
D+++A+K GK PL ++D + ++ ++
Sbjct: 738 IEQHEESLKNKDIEKAQKKFAKDNEKLVEEGKAPLDESALQDKIDSIEADYEKLVSERGT 797
Query: 870 ERKMAQTNAKIEKMERD-------MKT-------KEDLKTVALGTSKINYLDPRITVAWC 915
ER + IEK+E + MKT +E K VALGTSKINYLDPRIT AWC
Sbjct: 798 ERATLKRERPIEKLEENIQKLDEKMKTFKLQMDDREAGKEVALGTSKINYLDPRITAAWC 857
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
K H+VPIEKIF+K+LL KF WAM+VD ++F
Sbjct: 858 KTHDVPIEKIFSKTLLVKFPWAMEVDNNWKF 888
>gi|328769879|gb|EGF79922.1| hypothetical protein BATDEDRAFT_16830 [Batrachochytrium
dendrobatidis JAM81]
Length = 824
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 328/790 (41%), Positives = 451/790 (57%), Gaps = 87/790 (11%)
Query: 212 KNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLA 271
++V G ASK + V D D +VPLS + KS T K + KKP
Sbjct: 67 RSVATGKNASKPTGS----TVVKDDSGEDSDVPLSRKIKKSKT-TVDTKTKQMNTKKP-- 119
Query: 272 SKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEK 331
ST+ +++++ S R +K S+ PK S T+K+
Sbjct: 120 ------ASTTSGSKRQTDSSNNDRITKKLKKEPVSAKDVPKPS---------TATIKMTI 164
Query: 332 KADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTK 391
K+++ P K S P+ +N A++ K V +SS ++ K+ + K
Sbjct: 165 KSENGTSTP-----KKSKPTTN---SNKAESIKDVQNSSQDASQMDKQQDGDESDENDYK 216
Query: 392 M-LPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDT 450
L D KWTTL HNG FPP Y PHG+KMLY ++L+P EEVA+ FA ++ T
Sbjct: 217 WWLDHKKDNTVKWTTLSHNGPYFPPLYTPHGIKMLYNNVPISLSPASEEVASFFAALIGT 276
Query: 451 DYMQKPKFRENFWNDWRKLLGKNHV---IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKK 507
D+ F++NF+ D+ +L + ++ E CDF PI ++ +Q+EKKK MS EEK
Sbjct: 277 DWASNITFQKNFFRDFLGVLKETDPSCPVKTFEKCDFSPIAEYLADQREKKKTMSKEEKA 336
Query: 508 ALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
K+ K + + +Y W +DG KEKVGNFRVEPPGLFRGRGEHP+ G LK R+QP +TIN
Sbjct: 337 VEKQAKAEIDNQYGWLKIDGRKEKVGNFRVEPPGLFRGRGEHPRTGSLKLRVQPEQVTIN 396
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
IG D IPE P G W + +DNTVTWLA W + +N FKY+FLAA+SSLKGQSD +K
Sbjct: 397 IGADSTIPEPP-RGHKWGSIINDNTVTWLAMWKENVN-NSFKYIFLAANSSLKGQSDFKK 454
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 687
+EKAR LK ++ +IR YT + + RQ A A Y ID+LALRAGNEK DDEADTVGC
Sbjct: 455 FEKARVLKSHVDNIRRVYTDELKDKLMANRQRATALYFIDRLALRAGNEKGDDEADTVGC 514
Query: 688 CTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKL 746
C+L+ ++ PPNK+ FDFLGKDSI+Y N + V+ V+K I F+ K++ D LFD+L
Sbjct: 515 CSLRYEHITLKPPNKVVFDFLGKDSIRYYNEMTVDDQVFKNINIFKRDPKREGDPLFDRL 574
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAII 806
+TA LN +L + M GLTAKVFRTYNAS T L K +G V+ K+ Y RAN++VAI+
Sbjct: 575 NTAILNKYLNKFMEGLTAKVFRTYNASHTFQEELRKTPVNGTVSEKLLAYNRANRQVAIL 634
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR---VDLD-RAKKGKP------------ 850
CNHQR+V K HS+Q+++L +KI +K L ++ ++LD + KK +P
Sbjct: 635 CNHQRSVPKGHSSQIAKLQDKILAIKYDLMKVKQQMLELDPKLKKTRPELQEPESDLDDE 694
Query: 851 ---------------------------------PLMKDSDGKRKRNLAP-EALERKMAQT 876
PL+K+ KR ++ E LE+K A
Sbjct: 695 FIENHTRFLEECESERLQQRLDKENEKRKEDGLPLLKELPEKRTSSITSIEKLEKKYATL 754
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
+I + + K++ KT ALGTSKINY+DPRI+ AWC +H VP++KIF KSL KF W
Sbjct: 755 CDRIAAQKTSIIDKDENKTTALGTSKINYIDPRISAAWCHKHNVPLDKIFTKSLREKFTW 814
Query: 937 AMDVDPEFRF 946
AMD + ++ F
Sbjct: 815 AMDAEKDWEF 824
>gi|336371393|gb|EGN99732.1| hypothetical protein SERLA73DRAFT_106466 [Serpula lacrymans var.
lacrymans S7.3]
Length = 883
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/628 (47%), Positives = 394/628 (62%), Gaps = 80/628 (12%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
+GDG++KW TL H+GVIFPPPY LP VKM Y GK V+L P EEVA +A ML+T++
Sbjct: 260 ANGDGEEKWQTLEHSGVIFPPPYEPLPSHVKMKYNGKPVDLDPIAEEVAGFYAAMLETEH 319
Query: 453 MQKPKFRENFWNDWRKLLG----KNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKK 507
Q F +NF+ DW+K+L +N + I N E CDF+P+Y++ + +K KKK M++ EKK
Sbjct: 320 AQDNTFNKNFFEDWKKVLKDAPPRNKIKITNFEHCDFRPMYEYFEGEKAKKKAMTTAEKK 379
Query: 508 ALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
LK++K+ EEKY+ ++DG KEKVGNFRVEPPGLFRGRG+HPK G LK R++P DITIN
Sbjct: 380 ELKKQKDAYEEKYVTCVLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKFRVRPEDITIN 439
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
IG + IP +PG +WK++ HD TVTWLA W + IN KYVFLAA SSLKGQSD K
Sbjct: 440 IGAESHIPIPNMPG-TWKQIIHDKTVTWLANWVENINGNH-KYVFLAAGSSLKGQSDMSK 497
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 687
+EKAR+LK ++ IR Y D S+ RQ A A Y ID+LALRAGNEK +DEADTVGC
Sbjct: 498 FEKARELKKHVDRIRQDYNADLRSKIMADRQRATAMYFIDRLALRAGNEKGEDEADTVGC 557
Query: 688 CTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
C+L+ +V PN + FDFLGKDSI+Y N V VE V+K I F+ K+ ND+LFD+++
Sbjct: 558 CSLRCEHVTLEAPNFIIFDFLGKDSIRYYNRVAVEFQVFKNIRYFKENKEDNDNLFDRVN 617
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAII 806
T LN HL+ M GLTAKVFRTYNASIT L++ T + V K++ Y AN+ VAI+
Sbjct: 618 TTLLNKHLQSYMKGLTAKVFRTYNASITFQEQLDESTPENATVQEKLNAYNHANRMVAIL 677
Query: 807 CNHQRTVSKTHSAQMSRLTEK----------------IEDLKGVLKDLRVDLDRAKK--- 847
CNHQR+ KTH M ++ ++ IE + LK+ D+++A+K
Sbjct: 678 CNHQRSAPKTHEQSMEKMRDRKKKPYANDESDLDDDWIEQHEESLKN--KDIEKAQKKFA 735
Query: 848 ---------GKPPL----MKD------SDGKR------------KRNLAPEALERKMAQT 876
GK PL ++D +D ++ KR E LE + +
Sbjct: 736 KDNEKLVEEGKAPLDESALQDKIDSIEADYEKLVSERGTERATLKRERPIEKLEENIQKL 795
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFA- 935
+ K++ + M +E K VALGTSKINYLDPRIT AWCK H+VPIEKIF+K+LL K
Sbjct: 796 DEKMKTFKLQMDDREAGKEVALGTSKINYLDPRITAAWCKTHDVPIEKIFSKTLLVKCTS 855
Query: 936 -----------------WAMDVDPEFRF 946
WAM+VD ++F
Sbjct: 856 AELYFVLSLLMNVDSVPWAMEVDNNWKF 883
>gi|330842997|ref|XP_003293452.1| hypothetical protein DICPUDRAFT_50979 [Dictyostelium purpureum]
gi|325076220|gb|EGC30025.1| hypothetical protein DICPUDRAFT_50979 [Dictyostelium purpureum]
Length = 757
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/590 (48%), Positives = 382/590 (64%), Gaps = 41/590 (6%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
G DG K W TL HNG +FPP Y+PHG K LY GK V LTPEQEEVAT +A L+TD+++
Sbjct: 171 GDEDGPK-WQTLSHNGPVFPPAYIPHGTKFLYDGKVVKLTPEQEEVATFYANYLETDHVK 229
Query: 455 KPKFRENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
K FR+NF+ ++R LL I+NL CDF I+ + QE+KE +K S EK A E
Sbjct: 230 KEAFRDNFFAEFRGLLTTEQKKTIKNLAKCDFSHIHTFLQERKETRKSRSKNEKDAEAAE 289
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
K K +EKY +A++DG KEK+GNF +EPPGLF GRG HPK G LK+RI PSD+TINIGK
Sbjct: 290 KKKLQEKYGFAMIDGFKEKIGNFTIEPPGLFLGRGAHPKTGMLKQRIYPSDVTINIGKGE 349
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
+P PIPG WK+V HDNTVTWLAFW + IN KY++LA SS +KGQ+DR+K+E AR
Sbjct: 350 NVPPSPIPGHEWKDVVHDNTVTWLAFWKESINGGT-KYIWLAPSSKIKGQADRKKFEVAR 408
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLKD I SIR Y K F + +RQ+ VA YLID LALR GNEK +D+ADTVGCC+L+V
Sbjct: 409 KLKDCIESIRKGYIKSFTNDSEEKRQLGVALYLIDFLALRVGNEKGEDQADTVGCCSLRV 468
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+++ N + DFLGKDS++Y NTV++ YK + + GKK ++ LFD L A+LN
Sbjct: 469 EHIKLGKDNTITLDFLGKDSMRYFNTVKIRPDAYKVLQECVKGKKPSELLFDDLSVAQLN 528
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNK--GTGDGDVAVKIDVYQRANKEVAIICNHQ 810
HLK+ M GL+AKVFRTYNASITL LNK + + KI Y R N+EVAI+CNHQ
Sbjct: 529 THLKKQMDGLSAKVFRTYNASITLQKELNKMDESEYSTIEEKILYYNRCNREVAILCNHQ 588
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL-------------DRAKKGKPPLMKDSD 857
+ K S + ++ +KI + ++ R+ L +R K+ L++ +
Sbjct: 589 KAPPKNLSETLGKIDDKILEYNDLIDLCRIKLKLKPKTSDKDDIEEREKERLKKLIEANI 648
Query: 858 GK-------------------RKRNL--APEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
K R RN+ + + K+ + +I+K+E TK++LKTV
Sbjct: 649 AKKEENKTDKEVSFDTKATFERSRNIPDGEQKINDKIDKYEKQIKKLEIQKTTKDELKTV 708
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ALGTSKINYLDPRITV++CK+ +P+EKIF+K+L KF W+ DVD ++F
Sbjct: 709 ALGTSKINYLDPRITVSFCKKWGIPVEKIFSKALRDKFPWS-DVDKSYKF 757
>gi|66811030|ref|XP_639222.1| DNA topoisomerase I [Dictyostelium discoideum AX4]
gi|74854702|sp|Q54RC3.1|TOP1_DICDI RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|60467826|gb|EAL65841.1| DNA topoisomerase I [Dictyostelium discoideum AX4]
Length = 893
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/590 (48%), Positives = 384/590 (65%), Gaps = 52/590 (8%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KWTTL+HNG +FPP Y+PHG+K +Y GK V LTP+QEEVAT +A L+TD+++K F++N
Sbjct: 311 KWTTLIHNGPVFPPAYVPHGIKFMYDGKVVKLTPKQEEVATFYANYLETDHVKKQAFKDN 370
Query: 462 FWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
F+ +++ LL + +++ ++ CDF I+ + +KE++K S EEK A EK K +EK
Sbjct: 371 FFKEFKGLLTSEQKEIVKKMDKCDFSHIHTHLKTKKEQRKARSKEEKDAETAEKKKIQEK 430
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPI 579
+ +A +DG KEKVGN+ +EPPGLF GRG+HPK G LK+RI PSD+T+NIG+ IP PI
Sbjct: 431 HGFATIDGFKEKVGNYMIEPPGLFLGRGQHPKTGMLKQRIMPSDVTLNIGEGEVIPPSPI 490
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
PGE WKE+ H+NTVTWLAFW + +N FKYV+LA SS +KGQ+DR+K+E AR LK+ I
Sbjct: 491 PGEKWKEIVHNNTVTWLAFWRESVN-GGFKYVWLAPSSKIKGQADRKKFEVARGLKNCIG 549
Query: 640 SIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP 699
IR Y K F +RQ+AVA YLID LALR GNEK +D+ADTVGCC+L+V +++
Sbjct: 550 DIRKGYQKSFNDESTEKRQLAVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHIKLES 609
Query: 700 PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELM 759
N + DFLGKDS++Y+NTV++ YK + F GKK D LFD L +LN HLK+ M
Sbjct: 610 NNTITLDFLGKDSMRYLNTVQIREDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQM 669
Query: 760 PGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQRTVSKTH 817
GL+AKVFRTYNASITL L+K ++ KI Y R N+EVAI+CNHQ+ K
Sbjct: 670 TGLSAKVFRTYNASITLQKELDKMDTKEFQSIDEKILFYNRCNREVAILCNHQKAPPKNL 729
Query: 818 SAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD-------------------- 857
+ MS++ EKI++L+ DL+ DL R K GK P + D
Sbjct: 730 AETMSKIDEKIQELR----DLQ-DLCRIKIGKTPKSQQEDIESREAERLPKLIQLAITNK 784
Query: 858 ------------------GKRKRNLAPEA---LERKMAQTNAKIEKMERDMKTKEDLKTV 896
K P+A ++ K+A+ +I+K E K++LKTV
Sbjct: 785 KDKDKEKTDKEISFDVKAAFEKSRTLPDAKGKIKEKIAKYEEQIKKQEILKTGKDELKTV 844
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ALGTSKINYLDPRITVAWCK+++VP++KIF KSL KF W+ DV ++ F
Sbjct: 845 ALGTSKINYLDPRITVAWCKKNKVPVDKIFTKSLRDKFPWS-DVGTDYIF 893
>gi|384495064|gb|EIE85555.1| hypothetical protein RO3G_10265 [Rhizopus delemar RA 99-880]
Length = 767
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 333/790 (42%), Positives = 449/790 (56%), Gaps = 110/790 (13%)
Query: 239 SDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQ 298
SDDE+PLS R + +P D+ + + +V G +S + + +KRPL+
Sbjct: 6 SDDEIPLSERVKVEEKIKN--EPDVKDKLRVVKKEV--TGDSSDDDDIPLAQRQIKRPLE 61
Query: 299 KASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQR-------MKNSAPS 351
K +KP ++ T +V +K+ ++ D +D IP++ R M PS
Sbjct: 62 K---------QKP-ITTTDNDVDIKK------EELDSEDEIPLAMRKNIKPEPMDIDKPS 105
Query: 352 VKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGV 411
K+ + + + K K + S + D KWTTL HNGV
Sbjct: 106 KKRPLEKSENKKGKKKVKKEEEEKDIYKWWEEQDQSGIAE------DDSIKWTTLEHNGV 159
Query: 412 IFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG 471
+FPP Y PH VKM Y GK + L+PE EEVA+ FA +L+T++ Q P F++NF+NDW ++L
Sbjct: 160 LFPPEYEPHNVKMKYDGKPITLSPEAEEVASFFAALLETEHAQNPVFQKNFFNDWLQILK 219
Query: 472 K---NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGV 528
K N I+ CDF+PI++ Q++KE KKQMS +EK LKEEK K EE +M AIVDG
Sbjct: 220 KDPNNPDIKEFSKCDFRPIFEKFQQEKETKKQMSKQEKLKLKEEKAKIEEPFMTAIVDGR 279
Query: 529 KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK 588
KEKVGNFR+EPPGLFRGRG HPK GKLK R+ P +T+N+G + IPE P G W +
Sbjct: 280 KEKVGNFRIEPPGLFRGRGSHPKTGKLKTRVLPEQVTLNLGLNAKIPEPP-KGHKWGGIV 338
Query: 589 HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKD 648
HD T TWLA W + +N KYVFLAA+S+ KGQSD +K+EKAR+LK Y+ +IR YT++
Sbjct: 339 HDQTATWLATWKENVN-GSIKYVFLAATSAWKGQSDMQKFEKARELKKYVKTIRENYTRE 397
Query: 649 FVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFL 708
+ RQ A A YLID+LALRAGNEK +DEADTVGCC+L+ ++E PPN L FDFL
Sbjct: 398 LKDKISETRQRATAMYLIDRLALRAGNEKGEDEADTVGCCSLRYEHIELEPPNILHFDFL 457
Query: 709 GKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
GKDSI+Y NTVEV+ VYK I F+ +FD+L T LN +L M GL+AKVFR
Sbjct: 458 GKDSIRYQNTVEVDPQVYKNIKIFKKQVGPEHMIFDRLTTTGLNKYLNTCMKGLSAKVFR 517
Query: 769 TYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 827
TYNASIT L K T + D + K+ Y RAN+EVA++CNHQ+ SK H Q+S++ ++
Sbjct: 518 TYNASITFQEQLEKLTNENDTIPDKLLSYNRANREVAVLCNHQKAASKNHEQQISKMGDR 577
Query: 828 IEDLKGVLKDLR---VDLD-RAKKGKPPLMKDSD-------------------------G 858
I +K LR DLD +AKK P +SD
Sbjct: 578 IRAIKYQRMKLRKTLYDLDPKAKKSGPYADSESDLEEEWMIQHEKDLVAKEKDKVKIRFE 637
Query: 859 KRKRNLAPE------------------------ALERKMAQTNA-----------KIEKM 883
K+ LA E A ERK A A KIEKM
Sbjct: 638 KQNEKLAAENQPLLPESELTKNLKATDLLLEKLANERKAATIEAKASMTAEKTILKIEKM 697
Query: 884 ERDMKT-------KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
+ + +E+ K +ALGTSK+NY+DPRI+V WCK++ VP+EK+F+K+LL KF W
Sbjct: 698 DERIAAIKTQTTDREENKQIALGTSKLNYIDPRISVTWCKKYNVPLEKVFSKTLLEKFRW 757
Query: 937 AMDVDPEFRF 946
A + +++F
Sbjct: 758 AQKIPEDWKF 767
>gi|350638054|gb|EHA26410.1| hypothetical protein ASPNIDRAFT_206081 [Aspergillus niger ATCC
1015]
Length = 884
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 336/847 (39%), Positives = 473/847 (55%), Gaps = 138/847 (16%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLS---SRFP 250
++ EDD+PLS R + + K+ DPE +DD+VPL+ + P
Sbjct: 82 ESSEEDDQPLSKRRRTSVKH--------------------EDPE-TDDDVPLALNGRKLP 120
Query: 251 KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKK 310
K++ G +SD P+ K+ K+ +Q+ + A +K
Sbjct: 121 KASETAIGE---ESDSDVPIERKLASQ----------------KKKIQQKAEKDAKVTRK 161
Query: 311 PKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSS 370
P T+K K+ T V+K+ +D + + K + S K ++++ K ++ SS+
Sbjct: 162 PAPPKTTKTAATKRQTNGVKKEPEDVKPSTVKKTAKPTKASDKAALSSQVK--RAASSAK 219
Query: 371 NKINKKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLY 426
+ KK + + + P GDG KWTTL HNGV+FPPPY LP VKM Y
Sbjct: 220 STPVKKEESEEAEDADEEEYRWWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMKY 279
Query: 427 KGKEVNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFWNDWRKLLGK---------NHV- 475
G V L P+ EEVA F ML+ T +++ P F++NF+ D+R +L K N V
Sbjct: 280 DGIPVTLHPDAEEVAGFFGGMLNATQHVENPTFQKNFFMDFRDILKKTGGAKDPKGNKVD 339
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I++ CDF+PI+ ++ Q+++KK + EKK LK EK+ QE YM+ + DG K+KVGNF
Sbjct: 340 IKDFHKCDFQPIFAYYDNQRQEKKALPPAEKKRLKAEKDAQEAPYMFCMWDGRKQKVGNF 399
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
RVEPP LFRGRGEHPK G++K R+QP ITINIGKD P+P P G WKEVKHD TW
Sbjct: 400 RVEPPALFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPP-EGHKWKEVKHDQEGTW 458
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K+
Sbjct: 459 LAMWQENIN-GNYKYVMLAANSDVKGQSDYKKFEKARELKHHIGRIRKDYQKNLKHELMV 517
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQY 715
RQ A A YLID+ ALRAGNEK +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++
Sbjct: 518 ERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKPPNKVVFDFLGKDSIRF 577
Query: 716 VNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASI 774
+ VEV+ V+K + F+ KK+ D++FD+L T+ LN HL M GLTAKVFRTYNAS
Sbjct: 578 YDEVEVDAQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSAYMQGLTAKVFRTYNASH 637
Query: 775 TLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS------------ 822
T+ +L G++A K+ Y AN++VAI+CNH+RTV+ +H+ QM
Sbjct: 638 TMSTLLKDMKATGNIAEKVKAYNDANRKVAILCNHKRTVAASHANQMEKMSERIKGLRYQ 697
Query: 823 --RLTEKIEDLKGVLK----------DLRVDLDRAKKGKPPLMKD--------------- 855
RL +++ DL+ LK D +DL+ K+ + L+++
Sbjct: 698 RWRLKQQMLDLEPSLKKKKGAKYFEMDEDMDLEWVKEHQAFLVEEQRQKIQKKFEKDNEK 757
Query: 856 --SDGKRK--------RNLAPEALERKMAQTN-------------------------AKI 880
++G+++ R A + LE+K + N +I
Sbjct: 758 LAAEGEKEMKATELESRLQAAKDLEKKFNKENKTGKVEAEGKAPTVDKIEAAITKLEQRI 817
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-D 939
E ME + KE+ K VALGTSKINY+DPR+TV + K+ +VPIEK F+KSL KF WA+
Sbjct: 818 ETMELQAQDKEENKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKSLREKFEWAIKS 877
Query: 940 VDPEFRF 946
VD ++ F
Sbjct: 878 VDEDWEF 884
>gi|145229165|ref|XP_001388891.1| DNA topoisomerase 1 [Aspergillus niger CBS 513.88]
gi|134054991|emb|CAK36999.1| unnamed protein product [Aspergillus niger]
Length = 884
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 337/847 (39%), Positives = 470/847 (55%), Gaps = 138/847 (16%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLS---SRFP 250
++ EDD+PLS R + + K+ DPE +DD+VPL+ + P
Sbjct: 82 ESSEEDDQPLSKRRRTSVKH--------------------EDPE-TDDDVPLALNGRKLP 120
Query: 251 KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKK 310
K++ G +SD P+ K+ K+ +Q+ + A +K
Sbjct: 121 KASETAIGE---ESDSDVPIERKLASQ----------------KKKIQQKAEKDAKVTRK 161
Query: 311 PKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSS 370
P T+K K+ T V+K+ +D + + K + S K ++++ K ++ SS+
Sbjct: 162 PAPPKTTKTAATKRQTNGVKKEPEDVKPSTVKKTAKPTKASDKAALSSQVK--RAASSAK 219
Query: 371 NKINKKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLY 426
+ KK + + + P GDG KWTTL HNGV+FPPPY LP VKM Y
Sbjct: 220 STPVKKEESEEAEDADEEEYRWWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMKY 279
Query: 427 KGKEVNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFWNDWRKLLGK---------NHV- 475
G V L P+ EEVA F ML+ T +++ P F++NF+ D+R +L K N V
Sbjct: 280 DGIPVTLHPDAEEVAGFFGGMLNATQHVENPTFQKNFFMDFRDILKKTGGAKDPKGNKVD 339
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I++ CDF+PI+ ++ Q+++KK + EKK LK EK+ QE YM+ + DG K+KVGNF
Sbjct: 340 IKDFHKCDFQPIFAYYDNQRQEKKALPPAEKKRLKAEKDAQEAPYMFCMWDGRKQKVGNF 399
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
RVEPP LFRGRGEHPK G++K R+QP ITINIGKD P+P P G WKEVKHD TW
Sbjct: 400 RVEPPALFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPP-EGHKWKEVKHDQEGTW 458
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K+
Sbjct: 459 LAMWQENIN-GNYKYVMLAANSDVKGQSDYKKFEKARELKHHIGRIRKDYQKNLKHELMV 517
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQY 715
RQ A A YLID+ ALRAGNEK +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++
Sbjct: 518 ERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKPPNKVVFDFLGKDSIRF 577
Query: 716 VNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASI 774
+ VEV+ V+K + F+ KK+ D++FD+L T+ LN HL M GLTAKVFRTYNAS
Sbjct: 578 YDEVEVDAQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSAYMQGLTAKVFRTYNASH 637
Query: 775 TLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS------------ 822
T+ +L G++A K+ Y AN++VAI+CNH+RTV+ +H+ QM
Sbjct: 638 TMSTLLKDMKATGNIAEKVKAYNDANRKVAILCNHKRTVAASHANQMEKMSERIKGLRYQ 697
Query: 823 --RLTEKIEDLKGVLK----------DLRVDLDRAKKGKPPLMKDSDGKRKRN------- 863
RL +++ DL+ LK D +DL+ K+ + L+++ K ++
Sbjct: 698 RWRLKQQMLDLEPSLKKKKGAKYFEMDEDMDLEWVKEHQAFLVEEQRQKIQKKFEKDNEK 757
Query: 864 LAPEA------------------LERKMAQTN-------------------------AKI 880
LA E LE+K + N +I
Sbjct: 758 LAAEGEKEMKATELESRLQVAKDLEKKFNKENKTGKVEAEGKAPTVDKIEAAITKLEQRI 817
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-D 939
E ME + KE+ K VALGTSKINY+DPR+TV + K+ +VPIEK F+KSL KF WA+
Sbjct: 818 ETMELQAQDKEENKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKSLREKFEWAIKS 877
Query: 940 VDPEFRF 946
VD ++ F
Sbjct: 878 VDEDWEF 884
>gi|343175107|gb|AEM00018.1| topoisomerase 1B [Spodoptera exigua]
Length = 930
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/560 (50%), Positives = 363/560 (64%), Gaps = 19/560 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW L H G +F P Y LP VK Y GKE+ L+ + EEVA +A MLD +Y K
Sbjct: 379 DDGTKWKFLEHKGPVFAPDYEPLPENVKFYYDGKEMRLSQDAEEVAGFYARMLDHEYTTK 438
Query: 456 PKFRENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F NF+NDWRK++ +I++L C+FK ++ + Q EK + + EEK ALK +
Sbjct: 439 STFNNNFFNDWRKVMTHEETKIIKDLSKCNFKEMHAYFQSVSEKNRNRTKEEKAALKAKN 498
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ +++Y + I+DG KEK+GNFR+EPPGLFRGRGEHPKMG LK+R+ P D+ IN KD
Sbjct: 499 EEIQKEYGFCIIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKRRVMPEDVLINCSKDSK 558
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IP+ P PG WKEVKHDNTVTWLA W + + + KYV L SS LKG+ D +KYE ARK
Sbjct: 559 IPK-PPPGHKWKEVKHDNTVTWLASWTENVQG-QAKYVMLNPSSKLKGEKDWQKYETARK 616
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
L I IR Y D+ +++ RQ AVA Y IDKLALRAGNEKDDD+ADTVGCC+L+V
Sbjct: 617 LHKCIDVIRENYKNDWKAKEMRVRQRAVALYFIDKLALRAGNEKDDDQADTVGCCSLRVE 676
Query: 694 NVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
++ K FDFLGKDSI+Y N V VE V+K + F KK +DDLFD+L+T
Sbjct: 677 HIALHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLELFMENKKDSDDLFDRLNT 736
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIIC 807
LN HLK+LMPGLTAKVFRTYNASITL L++ T + KI Y RAN+ VA++C
Sbjct: 737 QTLNEHLKDLMPGLTAKVFRTYNASITLQRQLDELTDASASIPEKILAYNRANRAVAVLC 796
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE 867
NHQR V K HS M L EKI+ + + + DL A K G K LA +
Sbjct: 797 NHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEEDLREAAKAA------KRGSVKEKLACD 850
Query: 868 ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
++ + + +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H VPIEKI+N
Sbjct: 851 KKKKALERLREQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHGVPIEKIYN 910
Query: 928 KSLLAKFAWAMDV-DPEFRF 946
K+ KF WA+D+ PE+ F
Sbjct: 911 KTQRDKFRWAIDMAGPEYIF 930
>gi|291001795|ref|XP_002683464.1| predicted protein [Naegleria gruberi]
gi|284097093|gb|EFC50720.1| predicted protein [Naegleria gruberi]
Length = 568
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/569 (50%), Positives = 378/569 (66%), Gaps = 21/569 (3%)
Query: 386 YSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFA 445
+++S + + +KW TL HNGV+FPP Y PH + + Y GK V L PEQEEVATM+A
Sbjct: 13 WAQSDDTIQSILNSDQKWQTLKHNGVLFPPDYQPHSIPVYYDGKPVKLDPEQEEVATMYA 72
Query: 446 VMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
ML++DY+QK +F ENFW W++LLGKNH I++L CDF I++ +KE K +SEE
Sbjct: 73 SMLESDYIQKKQFNENFWAAWKELLGKNHTIKSLAKCDFSKIWEHLLTEKETKLNRTSEE 132
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
KKA KE K K E+ Y +A+VDG KEKV F++EPPGLFRGRG HPKMG LKKRIQP DIT
Sbjct: 133 KKAEKELKAKFEDAYKYALVDGRKEKVQQFKIEPPGLFRGRGTHPKMGMLKKRIQPEDIT 192
Query: 566 INIGK--DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
INIG+ DVP P G W V +NTV W+A + D IN K KYV A+ SS+K +
Sbjct: 193 INIGRLEDVPPPPT---GHKWGGVVSNNTVLWVAAFKDAINNKN-KYVQFASGSSMKAMN 248
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDD-DEA 682
D KY+ AR LKD I IR Y + + + + RQ+ VA Y IDKLALR GNEKDD +EA
Sbjct: 249 DYLKYQTARSLKDCIEKIREDYKQQWTEKQESDRQLGVAIYFIDKLALRVGNEKDDEEEA 308
Query: 683 DTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDL 742
DTVGCC+L+V +V + P+ +KFDFLGKDSI+Y NTVEVE VYK + F GKK++D L
Sbjct: 309 DTVGCCSLRVEHVSLVAPSSIKFDFLGKDSIRYENTVEVEKEVYKCVKGFIEGKKKSDML 368
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG----TGDGDVAVKIDVYQR 798
F K++ +KLN HLK M L+AKVFRTYNASITLD L K T D VA K+ ++
Sbjct: 369 FHKINPSKLNDHLKSYMEKLSAKVFRTYNASITLDRELKKLEREITSDMSVAEKVSIFNS 428
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSD 857
AN++VAI+CNHQR KT + + +KIED + L+ L+ L + KK PL+ +
Sbjct: 429 ANRQVAILCNHQRAAPKTFDTSVETMEKKIEDQETYLERLQQALKEPPKKPTQPLLPKT- 487
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
PE++ K+ KI+ ++++ K K + KTV+L TS+ NY DPRIT+AWCKR
Sbjct: 488 --------PESISSKIEAIKKKIDDLKQEKKMKIENKTVSLTTSRTNYCDPRITIAWCKR 539
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
+VP+ K+F+K+L KF WA+D + F
Sbjct: 540 TDVPVAKLFSKTLQDKFPWALDCPNNYTF 568
>gi|242016037|ref|XP_002428645.1| DNA topoisomerase, putative [Pediculus humanus corporis]
gi|212513308|gb|EEB15907.1| DNA topoisomerase, putative [Pediculus humanus corporis]
Length = 961
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/560 (50%), Positives = 371/560 (66%), Gaps = 26/560 (4%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG KKW L H G +F P Y LP VK Y GKE++L+ E EEVAT +A ML DY K
Sbjct: 417 DG-KKWKFLEHKGPLFAPLYERLPKSVKFFYDGKEISLSEEAEEVATFYAKMLTHDYTTK 475
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
KF NF+NDWRK++ + VI +L C+FKP+ + QE+ E++K MS EEKK +K++
Sbjct: 476 EKFNTNFFNDWRKVMTDKERKVITDLSKCNFKPMALYFQEKSEERKAMSKEEKKVIKDQN 535
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ +++Y + +DG KEK+GNFR+EPPGLFRGRGEHPKMG LKKR+ P D+ IN KD
Sbjct: 536 DAIQKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKKRVLPEDVIINCSKDSK 595
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IP+ P G WK+V+HD +VTWLA W + + KYV L SS LKG+ D KYE ARK
Sbjct: 596 IPKPP-DGHKWKKVQHDPSVTWLASWTENVQGN-VKYVMLNPSSKLKGEKDMVKYETARK 653
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
L I IR Y D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V
Sbjct: 654 LAKKIDKIREQYQADWKSKEMKIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVE 713
Query: 694 NVECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+VE P N + FDFLGKDSI+Y N V VE V+K + F+ K+ DDLFD+L+T
Sbjct: 714 HVELYPELNGKENVVVFDFLGKDSIRYYNEVPVEKRVFKNLLLFKENKQPQDDLFDRLNT 773
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIIC 807
LN HL ELM GLTAKVFRTYNAS TL L + T D VA K+ Y RAN+ VAI+C
Sbjct: 774 TVLNKHLNELMEGLTAKVFRTYNASWTLQEQLKELTNPDDTVAEKLLAYNRANRAVAILC 833
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE 867
NHQR+V K+H M L KIE + + +++ ++ AK+ ++ K+K+ L
Sbjct: 834 NHQRSVPKSHEKSMENLKAKIEAKREQINEIKKEVKNAKRNGDS---GTEAKKKKQLD-- 888
Query: 868 ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
++ + K+E E D KE+ KT+ALGTSK+NYLDPRI+VAWCK++ VPIEKI+N
Sbjct: 889 ----RLKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPRISVAWCKKYNVPIEKIYN 941
Query: 928 KSLLAKFAWAMDV-DPEFRF 946
K+ KF WA+D+ P++ F
Sbjct: 942 KTQRDKFRWAIDMAGPDYVF 961
>gi|395325235|gb|EJF57661.1| hypothetical protein DICSQDRAFT_68959 [Dichomitus squalens LYAD-421
SS1]
Length = 803
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/628 (47%), Positives = 386/628 (61%), Gaps = 81/628 (12%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG KW T+ HNGV FPPPY LP VKM Y G+ V+L PE EEVA + ML+T++ +
Sbjct: 178 DGSVKWETMEHNGVYFPPPYEPLPKHVKMKYNGQPVDLPPEAEEVAGFYGAMLETEHAKD 237
Query: 456 PKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
F +NF++D+ K+L K I E CDF+P+++ + +KEKKK M++ EKKA K
Sbjct: 238 ATFNKNFFDDFLKILKKYPPKNGLKITKFELCDFRPMFEHFEAEKEKKKSMTAAEKKAAK 297
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
K+ E Y +DG KEKVGNFRVEPPGLFRGRG+HPK G LK R++P DITINIGK
Sbjct: 298 AAKDALEAPYTHCFLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKLRVRPEDITINIGK 357
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D P+P+ +PGE WKEV HDNTVTWLA W + +N +KYVFLAA SS+KGQSD K+EK
Sbjct: 358 DAPVPKPNVPGE-WKEVVHDNTVTWLANWVENVNGN-YKYVFLAAGSSIKGQSDWTKFEK 415
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
AR+LK Y+ IR Y S++ RQ A A Y IDKLALRAGNEK ++EADTVGCC+L
Sbjct: 416 ARELKKYVDKIRLDYNDALKSKNMAERQRATAMYFIDKLALRAGNEKGEEEADTVGCCSL 475
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
+ +V PPNKL FDFLGKDSI+Y N V V+ VYK I F+ K +D+LFD+++T
Sbjct: 476 RCEHVTLEPPNKLVFDFLGKDSIRYYNEVAVDDQVYKNIRIFKNDKNDDDELFDRVNTGA 535
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICNH 809
LN HL M GLTAKVFRT+NAS+T +L++GT + G V K++ Y AN+ VAI+CNH
Sbjct: 536 LNRHLASYMKGLTAKVFRTFNASLTFQELLDRGTPEKGTVQEKLNAYNHANRMVAILCNH 595
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA-------KKGKPP---LMKDSDGK 859
QR V KTH M ++ EK+ LK LR L A KK K P L D+
Sbjct: 596 QRAVPKTHEQSMGKMREKLRGLKYERMKLRHALFAADARFKKNKKYKDPESDLDDDAIAS 655
Query: 860 RKRNLAPEALER---------------------------KMAQTNAKIEKMERDM----- 887
+ NL + +E+ K+ + A+ +K++++
Sbjct: 656 HEDNLKAKEIEKAEKKFQKDNEKAAADGKEPQDESVLKEKIKEIEAEYKKLKKERGTEKH 715
Query: 888 ----------------KTKEDLKTVAL-------------GTSKINYLDPRITVAWCKRH 918
K +E +KT L GTSKINYLDPRITV+WCK H
Sbjct: 716 ALKKERPTEKIEDAIEKLEERIKTFKLQMEDREAGKEVALGTSKINYLDPRITVSWCKEH 775
Query: 919 EVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VP+EK+F+K+L+ KF WAM+VD ++RF
Sbjct: 776 GVPVEKLFSKTLMTKFPWAMEVDTDWRF 803
>gi|398398109|ref|XP_003852512.1| DNA topoisomerase 1 [Zymoseptoria tritici IPO323]
gi|339472393|gb|EGP87488.1| hypothetical protein MYCGRDRAFT_100306 [Zymoseptoria tritici
IPO323]
Length = 868
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 337/835 (40%), Positives = 467/835 (55%), Gaps = 138/835 (16%)
Query: 235 DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQN-GSTSRETQQKSSSVPV 293
DP DSD +VP+S + TS A DSD++ PLA +Q +T+ + K + P+
Sbjct: 49 DPSDSDSDVPISKK-----RKTSKAIADDSDDE-PLAKVTKQPIKATAAQIGGKGAGQPM 102
Query: 294 KRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVK 353
+ L+KA + +A+K + S + K K+ + +DD+D +P++++ KN A
Sbjct: 103 AKTLEKAKEAIEKNAEKEAKAIRSADAKRKKAS------SDDEDDVPLAKK-KNPATKAP 155
Query: 354 KSVTNTAKATKSVSSSSNK--------------------------INKKTKKVIKNSQYS 387
+ T AK K S S + K KK +
Sbjct: 156 ANGTKKAKKVKDESDSDDAPLAKKAAAKKAPAKKAAVKKQASTPAKKGKVKKEESAEEED 215
Query: 388 KSTKMLP-------GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQE 438
+ P G+GD KWTTL HNGVIFPP Y LP VKMLY GK V++ + E
Sbjct: 216 GEEEEEPYRWWEDMGNGDDTTKWTTLEHNGVIFPPEYTPLPKNVKMLYDGKPVSMHKDAE 275
Query: 439 EVATMFAVML-DTDYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPI 487
E+A F ML T + P F++NF +D++++L K N V I E CDF PI
Sbjct: 276 EIAYAFGAMLMSTHNTENPTFQKNFLHDFKEMLDKTGGAKDESGNTVKITKFEKCDFTPI 335
Query: 488 YDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRG 547
++ ++ KK +S EKKALK EK+ E Y + + DG K+KVGNFRVEPPGLFRGRG
Sbjct: 336 FNHVDAERTAKKALSGAEKKALKAEKDAIEAPYQYCLWDGRKQKVGNFRVEPPGLFRGRG 395
Query: 548 EHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKE 607
EHPK GK KKR+ P +TINIGKD +P+ P G WKEVKHD TWLA W + IN
Sbjct: 396 EHPKTGKWKKRVLPEQVTINIGKDAMVPKPP-EGHKWKEVKHDGEGTWLAMWQENIN-NA 453
Query: 608 FKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLID 667
+KYV LAA+S +KG SD +K+EKAR+LK +I IR Y K+ S RQ A A YLID
Sbjct: 454 YKYVMLAANSDIKGMSDFKKFEKARELKKHIDKIRKDYEKELKSEVMAERQRATAVYLID 513
Query: 668 KLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYK 727
+ ALRAGNEK DDEADTVGCC+LK N+ PPNK+ FDFLGKDSI++ N VEV+ V+K
Sbjct: 514 RFALRAGNEKSDDEADTVGCCSLKFENISLSPPNKVIFDFLGKDSIRFYNEVEVDPQVFK 573
Query: 728 AIGQF-QTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD 786
+ F ++ KK+ D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L + +
Sbjct: 574 NLKIFKRSPKKEGDEIFDRLTTSSLNKHLSNYMPGLTAKVFRTYNASYTMATLLRELKAE 633
Query: 787 GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGV---LKDLRVDLD 843
G++ K+ Y AN+ VAI+CNH+RTV+ H QM ++ +KI L+ +K + +DLD
Sbjct: 634 GNIMDKVKAYNDANRMVAILCNHKRTVAAGHEGQMEKMEDKINGLRYQQYRIKHMMIDLD 693
Query: 844 ---RAKKGKP------PLMKD-----------------------------SDGKR----- 860
+ KKG+ L KD ++G++
Sbjct: 694 PKMKKKKGEAYFALPEGLDKDWQVKHHEALVEELRTKVQKKFDKENEKLEAEGEKPLKAK 753
Query: 861 ---KRNLAPEALERKMAQT-----------NAKIEKMERDMKT--------------KED 892
+R + E LE K+ Q +A ++K E+D++ +++
Sbjct: 754 ELEQRMVVVEELESKLKQELKKGKVEAEGKSATVDKYEKDLEKLDARIATMRLQAEDRDN 813
Query: 893 LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K VALGTSKINY+DPR+TV + K+ +VPIE+ F+K+L AKF WA++ VD ++ F
Sbjct: 814 NKEVALGTSKINYIDPRLTVVFSKKFDVPIERFFSKTLRAKFNWAIESVDEDWDF 868
>gi|270006557|gb|EFA03005.1| hypothetical protein TcasGA2_TC010428 [Tribolium castaneum]
Length = 943
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 281/561 (50%), Positives = 370/561 (65%), Gaps = 21/561 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KKW L H G +F PPY LP VK Y GKE+ LTPE EEVA+ ++ MLD DY K
Sbjct: 392 DDGKKWKFLEHKGPVFAPPYEPLPDHVKFYYDGKEMKLTPEAEEVASFYSKMLDHDYTTK 451
Query: 456 PKFRENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F NF+ DWRK++ ++ VI++L+ C+FK ++ ++ + EK + + EEK+ALKE+
Sbjct: 452 EVFNNNFFKDWRKVMSESERKVIKDLKKCNFKSMHAYYMDLAEKNRNRTKEEKQALKEKN 511
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMG LK+R++ DI IN +D
Sbjct: 512 EALIKEYGFCNIDGHKEKIGNFKIEPPGLFRGRGEHPKMGMLKRRVEAEDIIINCSQDSK 571
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IPE P PG WKEV+HD+ VTWLA W + + + KY+ L SS LKG+ D +KYE AR+
Sbjct: 572 IPEPP-PGHKWKEVRHDDNVTWLASWTENVQ-NQVKYIMLNPSSKLKGEKDWQKYETARR 629
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
L I IR Y D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V
Sbjct: 630 LHKCIDKIREEYKDDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVE 689
Query: 694 NVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
++ K FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T
Sbjct: 690 HISLHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMEHKSPGDDLFDRLNT 749
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIIC 807
A +N HL ELM GLTAKVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+C
Sbjct: 750 AIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNADDSVAEKILAYNRANRAVAILC 809
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSDGKRKRNLAP 866
NHQR+V K H M +L EKI+ K +KD + D AK K +K+ K+
Sbjct: 810 NHQRSVPKGHEKSMEKLKEKIDAKKEAIKDAERQVKDAAKDAKHGSVKEKTVYDKKKKML 869
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+ L+ ++ T +I++ +RD + KT+ALGTSK+NYLDPRI+VAWCK++ VPIEKI+
Sbjct: 870 QRLKEQL--TKLEIQETDRD-----ENKTIALGTSKLNYLDPRISVAWCKKYGVPIEKIY 922
Query: 927 NKSLLAKFAWAMDV-DPEFRF 946
NK+ KF WA+D+ P++ F
Sbjct: 923 NKTQRDKFRWAIDMAGPDYVF 943
>gi|189237298|ref|XP_971195.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
Length = 936
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 281/561 (50%), Positives = 370/561 (65%), Gaps = 21/561 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KKW L H G +F PPY LP VK Y GKE+ LTPE EEVA+ ++ MLD DY K
Sbjct: 385 DDGKKWKFLEHKGPVFAPPYEPLPDHVKFYYDGKEMKLTPEAEEVASFYSKMLDHDYTTK 444
Query: 456 PKFRENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F NF+ DWRK++ ++ VI++L+ C+FK ++ ++ + EK + + EEK+ALKE+
Sbjct: 445 EVFNNNFFKDWRKVMSESERKVIKDLKKCNFKSMHAYYMDLAEKNRNRTKEEKQALKEKN 504
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMG LK+R++ DI IN +D
Sbjct: 505 EALIKEYGFCNIDGHKEKIGNFKIEPPGLFRGRGEHPKMGMLKRRVEAEDIIINCSQDSK 564
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IPE P PG WKEV+HD+ VTWLA W + + + KY+ L SS LKG+ D +KYE AR+
Sbjct: 565 IPEPP-PGHKWKEVRHDDNVTWLASWTENVQ-NQVKYIMLNPSSKLKGEKDWQKYETARR 622
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
L I IR Y D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V
Sbjct: 623 LHKCIDKIREEYKDDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVE 682
Query: 694 NVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
++ K FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T
Sbjct: 683 HISLHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMEHKSPGDDLFDRLNT 742
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIIC 807
A +N HL ELM GLTAKVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+C
Sbjct: 743 AIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNADDSVAEKILAYNRANRAVAILC 802
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSDGKRKRNLAP 866
NHQR+V K H M +L EKI+ K +KD + D AK K +K+ K+
Sbjct: 803 NHQRSVPKGHEKSMEKLKEKIDAKKEAIKDAERQVKDAAKDAKHGSVKEKTVYDKKKKML 862
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+ L+ ++ T +I++ +RD + KT+ALGTSK+NYLDPRI+VAWCK++ VPIEKI+
Sbjct: 863 QRLKEQL--TKLEIQETDRD-----ENKTIALGTSKLNYLDPRISVAWCKKYGVPIEKIY 915
Query: 927 NKSLLAKFAWAMDV-DPEFRF 946
NK+ KF WA+D+ P++ F
Sbjct: 916 NKTQRDKFRWAIDMAGPDYVF 936
>gi|350404638|ref|XP_003487171.1| PREDICTED: DNA topoisomerase 1-like [Bombus impatiens]
Length = 1028
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 279/556 (50%), Positives = 364/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G +F PPY LP VK Y GKE+ L+ + EEVAT +A MLD DY K F
Sbjct: 481 KWTFLEHKGPVFAPPYEPLPPDVKFYYCGKEMKLSQDAEEVATFYARMLDHDYTTKSAFN 540
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK ++ + ++ E++K M+ EEK+ +KE + +
Sbjct: 541 NNFFHDWREVMTESERAKINDLSKCNFKEMHSYFVQKSEERKAMTKEEKQKIKETNEQIQ 600
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+DG KEK+GNF++EPPGLFRGRGEHPKMGKLK+R+ P DI IN KD IP+
Sbjct: 601 KEYGFCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKRRVMPEDILINCSKDSNIPKP 660
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 661 P-PGHKWKEVRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQL 718
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 719 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITL 778
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L+T +N
Sbjct: 779 HEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPSDDLFDRLNTTVMN 838
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 839 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTEAEKILSYNRANRAVAILCNHQR 898
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + + + AK+ G K + E ++
Sbjct: 899 SVPKTHAKSMENLKAKIEAKKQAISEAEHAVKEAKRDAKH------GSVKEKVVYEKKKK 952
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
+ + ++ K+E KE+ K +ALGTSK+NYLDPRITVAWCK+H VPIEKI+NK+
Sbjct: 953 ALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRITVAWCKKHNVPIEKIYNKTQR 1012
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1013 DKFRWAIDMAGPDYVF 1028
>gi|340720974|ref|XP_003398903.1| PREDICTED: DNA topoisomerase 1-like [Bombus terrestris]
Length = 1027
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 279/556 (50%), Positives = 363/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G +F PPY LP VK Y GKE+ L+ + EEVAT +A MLD DY K F
Sbjct: 480 KWTFLEHKGPVFAPPYEPLPPDVKFYYCGKEMKLSQDAEEVATFYARMLDHDYTTKSAFN 539
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK ++ + ++ E++K M+ EEK+ +KE + +
Sbjct: 540 NNFFHDWREVMTESERAKINDLSKCNFKEMHSYFVQKSEERKAMTKEEKQKIKEMNEQIQ 599
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+DG KEK+GNF++EPPGLFRGRGEHPKMGKLK+R+ P DI IN KD IP+
Sbjct: 600 KEYGFCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKRRVMPEDILINCSKDSNIPKP 659
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 660 P-PGHKWKEVRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQL 717
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 718 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITL 777
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L+T +N
Sbjct: 778 HEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPSDDLFDRLNTTVMN 837
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 838 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTEAEKILSYNRANRAVAILCNHQR 897
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + + + AK+ G K + E ++
Sbjct: 898 SVPKTHAKSMENLKAKIEAKKQAISETEHAVKEAKRDAKH------GSVKEKVVYEKKKK 951
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
+ + ++ K+E KE+ K +ALGTSK+NYLDPRITVAWCK+H VPIEKI+NK+
Sbjct: 952 TLDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRITVAWCKKHNVPIEKIYNKTQR 1011
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P + F
Sbjct: 1012 DKFRWAIDMAGPNYVF 1027
>gi|326432616|gb|EGD78186.1| DNA binding/DNA topoisomerase type I [Salpingoeca sp. ATCC 50818]
Length = 791
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 305/680 (44%), Positives = 422/680 (62%), Gaps = 45/680 (6%)
Query: 291 VPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAP 350
VP+++ K + + K P TSK K + + DD+D+ P +R K S
Sbjct: 133 VPLQQLANKTTPKASPKKKSPAKRTTSK--------AKTKTEDDDEDYSPAKKRAKASGG 184
Query: 351 -SVKKSVTNTA-------KATKSVSSSSNKINKKTKKVIKNSQYSKST--------KMLP 394
+VKK+ A K K+ + K +KK K K + + ++LP
Sbjct: 185 GTVKKNKQQKATPAKRGKKTPKTEPKAEAKDDKKGGKRAKKPKKEEEVPVYRWWEDEVLP 244
Query: 395 GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
+GQ W TL H G +F PPY LP V +LY GK + P EEVAT +A ML+ DY
Sbjct: 245 ---EGQY-WRTLEHRGPMFAPPYQPLPKDVYLLYDGKPYHFEPAAEEVATFYAAMLERDY 300
Query: 453 MQKPKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
++KP F +NF+ DW+ + I++L+ CDF I+ + +++ E++K S EEK+ K
Sbjct: 301 VKKPVFNKNFFADWKTTMTAQEKKDIKDLKKCDFSLIHRFLKQRAEERKGASKEEKQKRK 360
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EE +K +++Y +AI+DG + VGNF++EPPGLF+GRGEHPKMGKLK+R+ P + INIGK
Sbjct: 361 EENDKIKQEYGFAIIDGRRAPVGNFKIEPPGLFQGRGEHPKMGKLKRRVLPEQVIINIGK 420
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
+ +PE P G WKEV+HDN V+WLA W + I K KYV LA S +KG++D +KYE
Sbjct: 421 EAKVPEPPA-GHRWKEVRHDNKVSWLAAWVENIQ-KSNKYVMLAPDSHIKGRTDWKKYEL 478
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCT 689
AR L + IR YTK S+ RQ + A Y IDKLALRAG EKD DE ADTVGCC+
Sbjct: 479 ARSLHKCVQKIRDDYTKGLKSKLMFERQRSTALYFIDKLALRAGGEKDADESADTVGCCS 538
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
L+V +V +P ++L+FDFLGKDSI+Y N V+V+ V+K IG F+ GK + DDLFD+L T+
Sbjct: 539 LRVEHVTPLPDDELEFDFLGKDSIRYYNKVKVDHRVWKNIGHFKKGKSEGDDLFDRLSTS 598
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
LN +LKELMPGL+AKVFRTYNASITL L DG + K+ YQRAN++VAI+CNH
Sbjct: 599 LLNEYLKELMPGLSAKVFRTYNASITLQDQLKSTPVDGSIEEKMLAYQRANRQVAILCNH 658
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKD--SDGKRKRNLAPE 867
QR KTH QM R+ E I+ +K D+ + KK + L + + + E
Sbjct: 659 QRAAPKTHDKQMERMDEAIQKIKD-------DIAKTKKERKALKAEVRTHTQSHTGCCIE 711
Query: 868 ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
++RK+ + +++K E KE+ KT+AL TSK+NYLDPRI+VAWCK+H+VPIEK++N
Sbjct: 712 GMKRKLERLELRLKKKEIAKIDKEENKTIALSTSKLNYLDPRISVAWCKKHDVPIEKVYN 771
Query: 928 KSLLAKFAWAMD-VDPEFRF 946
+ KF WA++ VD +F F
Sbjct: 772 PTQRRKFRWAIEMVDKDFVF 791
>gi|383847196|ref|XP_003699241.1| PREDICTED: DNA topoisomerase 1-like [Megachile rotundata]
Length = 1033
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 280/549 (51%), Positives = 365/549 (66%), Gaps = 18/549 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G +F PPY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F
Sbjct: 486 KWTFLEHKGPVFAPPYEPLPPDVKFYYNGKEMKLSEEAEEVATFYARMLDHDYTTKPVFN 545
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I++L C+FK ++ + ++ E++KQM+ EEK+ +KE+ + +
Sbjct: 546 ANFFHDWREVMTESERAKIEDLSKCNFKEMHAYFLQKSEERKQMTKEEKQKIKEKNEEIQ 605
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P DI IN KD IP+
Sbjct: 606 KEYGFCTIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDILINCSKDSNIPKP 665
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKE++HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 666 P-PGHKWKEIRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQS 723
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 724 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITL 783
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K NDDLFD+L+T +N
Sbjct: 784 HEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPNDDLFDRLNTTVMN 843
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR
Sbjct: 844 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTVAEKILSYNRANRAVAILCNHQR 903
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KI+ K + D + + AK+ G K E ++
Sbjct: 904 SVPKTHAKSMENLKTKIDAKKQAIADAELAVKDAKRNA------KHGSVKEKDIYEKKKK 957
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++ K+E KE+ K +ALGTSK+NYLDPRI+VAWCK+H VPIEKI+NK+
Sbjct: 958 QLDKLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRISVAWCKKHNVPIEKIYNKTQR 1017
Query: 932 AKFAWAMDV 940
KF WA+D+
Sbjct: 1018 DKFRWAIDM 1026
>gi|449546699|gb|EMD37668.1| hypothetical protein CERSUDRAFT_114313 [Ceriporiopsis subvermispora
B]
Length = 895
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 300/632 (47%), Positives = 387/632 (61%), Gaps = 87/632 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG +KW TL HNGV FPPPY LP VKM Y GK VNL PE EEVA +A +L+TD+ +
Sbjct: 269 GDGTQKWRTLEHNGVYFPPPYEPLPSDVKMKYNGKFVNLPPESEEVAGFYAALLETDHAR 328
Query: 455 KPKFRENFWNDWRKLLGKN-----HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
F +NF++DW+K+L KN I N E CDF+P+YD+ + +K KKK +++ EKK L
Sbjct: 329 DKTFNKNFFDDWQKVLKKNPPRDGTKITNFELCDFRPMYDYFETEKAKKKALTTAEKKEL 388
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K +K+ E Y +DG KEKVGNFRVEPPGLFRGRG+HPK G LK R++P DI INIG
Sbjct: 389 KAKKDALEAPYTHCFLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKYRVRPEDIIINIG 448
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
VP P+ +PG+ WK+V HDNTVTWLA W + +N KYVFLAA SS+KGQSD +K+E
Sbjct: 449 DGVPTPKPNMPGK-WKDVIHDNTVTWLANWTENVNGNH-KYVFLAAGSSIKGQSDMQKFE 506
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK+++ IRA Y++D ++ RQ A A Y ID+LALRAGNEK +DEADTVGCC+
Sbjct: 507 KARELKNHVDRIRADYSRDLKAKVMQDRQRATAMYFIDRLALRAGNEKGEDEADTVGCCS 566
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
L+ ++ PP+KL FDFLGKDSI+Y N V+V+ V+K I F+ K+ DDLFD++ TA
Sbjct: 567 LRCEHITLQPPDKLIFDFLGKDSIRYYNQVDVDEQVFKNIRIFKDNKEDEDDLFDRVGTA 626
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICN 808
LN HL+ M GLTAKVFRTYNASIT L++GT + G V K++ Y AN+ VAI+CN
Sbjct: 627 SLNKHLQSYMKGLTAKVFRTYNASITFQQQLDQGTPEKGTVQEKLNAYNHANRMVAILCN 686
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSD------G 858
HQR V KTH M ++ EK+ K LR L + KK K +SD
Sbjct: 687 HQRAVPKTHEQSMGKMREKLRGFKYERMKLRHALFAIDPKYKKNKKYSADESDLDDDAIA 746
Query: 859 KRKRNLAP---EALERKMAQTNAKIEKMERDMK-------TKEDLKTVAL---------G 899
+++ L E +E+K A+ N EK+ D K KE L+ V G
Sbjct: 747 EQEEQLKAKEIEKVEKKFAKDN---EKLAEDGKEPLKESVLKERLQEVEAEFKRLKKERG 803
Query: 900 TSK---------------INYLDPRITV------------------------------AW 914
T K I LD +I V AW
Sbjct: 804 TGKHQLKRDRPTDKIEDAIEKLDEKIKVFKLQMEDREAGKEVALGTSKINYLDPRITAAW 863
Query: 915 CKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
CK+H+VPIEKIF+K+LL KF WAM+V+ E++F
Sbjct: 864 CKKHDVPIEKIFSKTLLTKFPWAMEVEDEWKF 895
>gi|401886620|gb|EJT50647.1| topoisomerase I [Trichosporon asahii var. asahii CBS 2479]
Length = 870
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 287/620 (46%), Positives = 375/620 (60%), Gaps = 82/620 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTT HNGV+FPPPY LP VKM Y GK V L PE EEVA F M++TD+ +
Sbjct: 243 DNSVKWTTFQHNGVLFPPPYVPLPKNVKMKYDGKPVTLPPESEEVAGFFGAMIETDHAKD 302
Query: 456 PKFRENFWNDWRKLL-----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P FR NF+ D++++ + I +LE CDF IY + + ++EKKK +S EEKKA+K
Sbjct: 303 PVFRANFFRDFKEMCEEYPPAEGVKITSLEKCDFSDIYQYFESEREKKKALSKEEKKAIK 362
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
E K+K EE YM+A++DG KEK GNFR EPP LFRGRGEHP+ G LK R++P DI INIGK
Sbjct: 363 EAKDKLEEPYMYALIDGRKEKTGNFRAEPPSLFRGRGEHPRKGTLKHRLRPEDIVINIGK 422
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D PIP IPG+ WK ++HDNTVTWLA W + +N + KYVFL+A+SS KGQSDR K+EK
Sbjct: 423 DAPIPVPNIPGK-WKGIQHDNTVTWLAHWKENVNGQS-KYVFLSAASSWKGQSDRAKFEK 480
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
AR+L ++ IR Y D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC+L
Sbjct: 481 ARELIKHVDKIRRIYNTDMKSKVMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCSL 540
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDS+++ VEVE V+K I F+ KK DD+FD+L T
Sbjct: 541 RYEHVTLEPPNKVIFDFLGKDSMRFHQEVEVEPQVFKNIKLFKAEPKKTGDDIFDRLTTT 600
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
LN L++ M GLTAKVFRTYNAS T L +G VA KI Y AN++VA++CNH
Sbjct: 601 GLNKWLQDQMKGLTAKVFRTYNASWTFQEQLKNTPKNGTVAEKIAAYNTANRDVAVLCNH 660
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDG------- 858
Q++VSK + ++ +KI LK LR L + KK +P L +D
Sbjct: 661 QKSVSKNFAESFAKANDKIRALKYQRMKLRKQLFNVNPKIKKKRPELAEDESDVDDEFIE 720
Query: 859 KRKRNLAPEALE---RKMAQTNAKIEK-----------MERDMKTKEDLKTVA------- 897
+ + L +A+E +K + N K+E+ ER + K++ K +A
Sbjct: 721 RHEEELKEKAMENARKKFEKENVKLEEDGKKPQGAKVLNERLAEIKDEFKQLAKERKKAS 780
Query: 898 ----------------------------------------LGTSKINYLDPRITVAWCKR 917
LGTSKINY+DPR+TVAW K+
Sbjct: 781 IEPKKNMTEERLLNAISKLDDRIATAKVQLGDRDKLKDVALGTSKINYIDPRLTVAWAKK 840
Query: 918 HEVPIEKIFNKSLLAKFAWA 937
++VP+EK+F+K+L KF WA
Sbjct: 841 YDVPLEKLFSKTLREKFPWA 860
>gi|328786783|ref|XP_003250839.1| PREDICTED: DNA topoisomerase 1 isoform 1 [Apis mellifera]
Length = 1022
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/556 (50%), Positives = 366/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G +F PPY LP V Y GKE+ L+ + EEVAT +A MLD DY KP F
Sbjct: 475 KWTFLEHKGPVFAPPYEPLPPDVNFYYNGKEMKLSQDTEEVATFYARMLDHDYTTKPAFN 534
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +
Sbjct: 535 SNFFHDWREVMTESERTKIVDLSKCNFKEIHAYFIQKSEERKAMTKEEKQKIKEKNEEIQ 594
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P DI IN KD IP+
Sbjct: 595 KEYGYCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDILINCSKDSNIPKP 654
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKE++HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 655 P-PGHKWKEIRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYEIARKLAQL 712
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 713 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITL 772
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L+T +N
Sbjct: 773 HEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPSDDLFDRLNTTVMN 832
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 833 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTEAEKILSYNRANRAVAILCNHQR 892
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + D + + AK+ G K + E ++
Sbjct: 893 SVPKTHAKSMENLKAKIEAKKQAINDAELAVKDAKRDA------KHGSVKEKVTYEKKKK 946
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
+ + ++ K+E KE+ K +ALGTSK+NYLDPRITVAWCK+H VPIEKI+NK+
Sbjct: 947 ALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRITVAWCKKHNVPIEKIYNKTQR 1006
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1007 DKFRWAIDMAGPDYVF 1022
>gi|328786781|ref|XP_396203.4| PREDICTED: DNA topoisomerase 1 isoform 2 [Apis mellifera]
Length = 1026
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/556 (50%), Positives = 366/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G +F PPY LP V Y GKE+ L+ + EEVAT +A MLD DY KP F
Sbjct: 479 KWTFLEHKGPVFAPPYEPLPPDVNFYYNGKEMKLSQDTEEVATFYARMLDHDYTTKPAFN 538
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +
Sbjct: 539 SNFFHDWREVMTESERTKIVDLSKCNFKEIHAYFIQKSEERKAMTKEEKQKIKEKNEEIQ 598
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P DI IN KD IP+
Sbjct: 599 KEYGYCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDILINCSKDSNIPKP 658
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKE++HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 659 P-PGHKWKEIRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYEIARKLAQL 716
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 717 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITL 776
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L+T +N
Sbjct: 777 HEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPSDDLFDRLNTTVMN 836
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 837 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTEAEKILSYNRANRAVAILCNHQR 896
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + D + + AK+ G K + E ++
Sbjct: 897 SVPKTHAKSMENLKAKIEAKKQAINDAELAVKDAKRDA------KHGSVKEKVTYEKKKK 950
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
+ + ++ K+E KE+ K +ALGTSK+NYLDPRITVAWCK+H VPIEKI+NK+
Sbjct: 951 ALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRITVAWCKKHNVPIEKIYNKTQR 1010
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1011 DKFRWAIDMAGPDYVF 1026
>gi|380027021|ref|XP_003697235.1| PREDICTED: DNA topoisomerase 1-like [Apis florea]
Length = 1024
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/556 (50%), Positives = 366/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G +F PPY LP V Y GKE+ L+ + EEVAT +A MLD DY KP F
Sbjct: 477 KWTFLEHKGPVFAPPYEPLPPDVNFYYNGKEMKLSQDAEEVATFYARMLDHDYTTKPAFN 536
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +
Sbjct: 537 SNFFHDWREVMTESERAKIVDLSKCNFKEIHAYFIQKSEERKAMTKEEKQKIKEKNEEIQ 596
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P DI IN KD IP+
Sbjct: 597 KEYGYCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDILINCSKDSNIPKP 656
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKE++HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 657 P-PGHKWKEIRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYEIARKLAQL 714
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 715 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITL 774
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L+T +N
Sbjct: 775 HEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPSDDLFDRLNTTVMN 834
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 835 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTEAEKILSYNRANRAVAILCNHQR 894
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + D + + AK+ G K + E ++
Sbjct: 895 SVPKTHAKSMENLKAKIEAKKQAINDAELAVKDAKRDA------KHGSVKEKVTYEKKKK 948
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
+ + ++ K+E KE+ K +ALGTSK+NYLDPRITVAWCK+H VPIEKI+NK+
Sbjct: 949 ALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRITVAWCKKHNVPIEKIYNKTQR 1008
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1009 DKFRWAIDMAGPDYVF 1024
>gi|49227597|ref|NP_001001838.1| DNA topoisomerase I, mitochondrial precursor [Danio rerio]
gi|40841767|gb|AAR92364.1| mitochondrial topoisomerase I [Danio rerio]
gi|67678162|gb|AAH96851.1| Mitochondrial topoisomerase I [Danio rerio]
Length = 600
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 278/556 (50%), Positives = 366/556 (65%), Gaps = 18/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW++L H G F P Y LP + Y G++V L+P EE+AT +A MLD +Y K F+
Sbjct: 52 KWSSLEHKGPYFAPDYEPLPANICFYYDGQQVKLSPLTEEIATFYAKMLDHEYTTKEVFQ 111
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + K +I L CDF I+ + E+ E+KK M+ EEK+ LK+E +
Sbjct: 112 KNFFKDWRKEMTKEERKLITTLSKCDFTHIHKYFVEKAEEKKNMTKEEKQVLKDEAARLM 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E++ + ++DG +EK+GNF++EPPGLFRGRGEHPKMG+LKKRIQP D+ IN KD IPE
Sbjct: 172 EEFGYCLLDGHREKIGNFKLEPPGLFRGRGEHPKMGRLKKRIQPEDVAINCSKDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WK V+HDNTVTWLA W + I PK KY+ L SS LKG+ D +KYE AR+LK+
Sbjct: 231 PPAGHKWKRVQHDNTVTWLASWLENI-PKRPKYIMLNPSSKLKGEKDWQKYETARRLKEC 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ SIR Y +D+ SR+ RQ VA Y IDKLALRAGNEKDD+ ADTVGCC+L+V ++
Sbjct: 290 VKSIRKRYMQDWKSREMKSRQRGVAIYFIDKLALRAGNEKDDESADTVGCCSLRVEHIRL 349
Query: 698 IPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+ ++FDFLGKDSI+Y N V VE V+K + F K DDLFD++ T LN
Sbjct: 350 HKHLDGLDHVVEFDFLGKDSIRYYNKVPVEKQVFKNLKLFIKHKDPEDDLFDRISTVNLN 409
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
L E M GLTAKVFRT+NAS TL LNK T D V KI Y RAN+ VAI+CNHQR
Sbjct: 410 KALTESMSGLTAKVFRTFNASTTLQDQLNKLTSDDCTVEEKILSYNRANRAVAILCNHQR 469
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
KT M L EKI+ K +++ R +L AK+ + KD+ + L E ++
Sbjct: 470 AAPKTFEKSMQLLQEKIQKKKEQIEEARKELKEAKQ----VDKDTPSDKSSKLV-EKKQK 524
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
+ + +++K++ +E+ K +ALGTSK+NYLDPRITVAWCK+H+VPIEKIFNK+
Sbjct: 525 AVQRLCDQLKKLQLQETDREENKVIALGTSKLNYLDPRITVAWCKKHQVPIEKIFNKTHR 584
Query: 932 AKFAWAMDV-DPEFRF 946
KFAWA+D+ D F+F
Sbjct: 585 EKFAWAIDMTDESFQF 600
>gi|242803152|ref|XP_002484116.1| topoisomerase I [Talaromyces stipitatus ATCC 10500]
gi|218717461|gb|EED16882.1| topoisomerase I [Talaromyces stipitatus ATCC 10500]
Length = 864
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 333/848 (39%), Positives = 468/848 (55%), Gaps = 150/848 (17%)
Query: 197 SEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLS-----SRFPK 251
SED+KPLS + + ++K K D DS++++PL+ ++ P+
Sbjct: 69 SEDEKPLSKKRRVSTK--------------------KQDDSDSEEDIPLARKANAAKLPR 108
Query: 252 SNAGTSGAKPIDSDEKKPLASKVQ-QNGSTSRETQQKSSSV--PVKRPLQKASSS-GASS 307
++ G +SD P+ K++ Q + ++ +Q++ ++ L+K S+ A++
Sbjct: 109 ASETAIGE---ESDSDIPIERKLKKQKANIEKKAEQEAKAIRKAEATSLKKTSTEKAAAN 165
Query: 308 AKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVS 367
KKPK + E V +K E P+ ++ K A VK+ + A +
Sbjct: 166 GKKPKANGVKTENGVGTKKIKAEP------STPV-KKGKGKATPVKEESEDVEAAEEEEE 218
Query: 368 SSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKML 425
+ P GDG KWTTL HNGV+FPPPY LP VKM
Sbjct: 219 YRWWED--------------------PTKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMK 258
Query: 426 YKGKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNH 474
Y G V L PE EEVA F ML++ + ++ P F++NF++D++ +L G+
Sbjct: 259 YDGIPVVLEPEAEEVAGFFGSMLNSTHNVENPTFQKNFFDDFKAILKKTGGAKTQKGEPI 318
Query: 475 VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGN 534
I+ CDFKPI++++ ++ +KK MS+ EKKALK EK+ E YM+ + DG K+KVGN
Sbjct: 319 DIKEFSKCDFKPIFEYYDAKRLEKKAMSAAEKKALKAEKDAAEAPYMYCMWDGRKQKVGN 378
Query: 535 FRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVT 594
FRVEPPGLFRGRGEHPK GK+K R+QP ITINIGK+ +P P G WKEV+HD T
Sbjct: 379 FRVEPPGLFRGRGEHPKTGKVKTRVQPEQITINIGKEAKVPPPP-EGHKWKEVRHDQEGT 437
Query: 595 WLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDG 654
WLA W + +N +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y S
Sbjct: 438 WLAMWQENVNG-NYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIREDYRVGLKSELM 496
Query: 655 TRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQ 714
RQ A A YLIDK ALRAGNEK +DEADTVGCC+LK NV PPN + FDFLGKDSI+
Sbjct: 497 ADRQRATAVYLIDKFALRAGNEKGEDEADTVGCCSLKYENVSLRPPNTVIFDFLGKDSIR 556
Query: 715 YVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNAS 773
+ + VEV+ V+K + F+ KK+ D++FD+L T+ LN HL MPGLTAKVFRTYNAS
Sbjct: 557 FYDEVEVDPQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNAS 616
Query: 774 ITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL-- 831
T +L +G VA K+ Y AN+ VAI+CNH+RTV+ H+ QM +L ++I+ L
Sbjct: 617 YTFATLLKDMKAEGTVAEKVKQYNDANRRVAILCNHKRTVTAGHANQMEKLGDRIKGLRY 676
Query: 832 -KGVLKDLRVDLD---RAKKGKPPLMKDSD------------------------------ 857
K +K + +DLD + KKG D D
Sbjct: 677 QKWRVKMMMLDLDPSQKKKKGAKYFELDDDLDQAWIQEHQAFLVEEQKQKITKKFEKENE 736
Query: 858 ---GKRKRNLAPEALERKMA------------------------QTNAKIE----KMERD 886
+ ++ + P+ L+ ++A QT K+E K+E+
Sbjct: 737 KLAAEGEKEMKPKELDERLAVLKDMEKKFQKENKTGKVEAEGKGQTIEKLENNVAKLEQR 796
Query: 887 MKT-------KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM- 938
++T KE+ K VALGTSKINY+DPR+TV + K+ VPIEK F+K+L KF WA+
Sbjct: 797 IETMSLQAEDKENNKEVALGTSKINYIDPRLTVVFTKKFNVPIEKFFSKTLREKFDWAIK 856
Query: 939 DVDPEFRF 946
VD ++ F
Sbjct: 857 SVDEDWEF 864
>gi|430814640|emb|CCJ28154.1| unnamed protein product [Pneumocystis jirovecii]
Length = 870
Score = 517 bits (1332), Expect = e-143, Method: Compositional matrix adjust.
Identities = 311/685 (45%), Positives = 410/685 (59%), Gaps = 92/685 (13%)
Query: 351 SVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPG--------------- 395
S + S+ +T +A K S +K+ KKT + K S KS
Sbjct: 189 STENSLKSTQEANKKAKQSEDKVKKKTP-IPKKSNSEKSENHELSKLKEEEEEDYKWWEQ 247
Query: 396 -SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD- 451
GDG KWTTL HNGVIFPPPY LP VKM Y GK ++L PE EEVA F ML ++
Sbjct: 248 QQGDGTIKWTTLEHNGVIFPPPYQPLPSYVKMKYDGKPIDLPPEAEEVAGFFGAMLSSEQ 307
Query: 452 YMQKPKFRENFWNDWRKLLGKNHVI-------------------QNLEGCDFKPIYDWHQ 492
+++ P F++NF+ND++++ K + + + E CDF P++++ +
Sbjct: 308 HVKNPTFQKNFFNDFQQICKKTNAVNNIHIHIYIISNVIQPFIPETFEKCDFTPMFEYFE 367
Query: 493 EQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 552
++KE+KK MS EEKK LKEEK+ EEKY + +DG KEKVGNFR+EPPGLFRGRG+HPK
Sbjct: 368 KKKEEKKNMSKEEKKKLKEEKDALEEKYKYCYLDGRKEKVGNFRIEPPGLFRGRGDHPKT 427
Query: 553 GKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVF 612
GKLK R+ P + INIGKD +P P PG +WKE++HDNTVTWLA WN+ +N KYVF
Sbjct: 428 GKLKMRVLPEQVIINIGKDATVP-SPPPGHTWKEIRHDNTVTWLATWNENVN-NNVKYVF 485
Query: 613 LAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
L+A SSLKGQSD +KYEKARKLK YI IR Y K+ RQ A A YLID ALR
Sbjct: 486 LSAGSSLKGQSDFKKYEKARKLKMYIDDIRKQYRKELKDELTEIRQRATAMYLIDVFALR 545
Query: 673 AGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF 732
AGNEK +DEADTVGCC+L+ +V PPN + FDFLGKDSI+Y N V+V+ V+K + F
Sbjct: 546 AGNEKGEDEADTVGCCSLRYEHVSLSPPNTVVFDFLGKDSIRYYNEVQVDPQVFKNLKIF 605
Query: 733 QT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV 791
+ K + D LFD+L+T+KLN HL LMPGL+AKVFRT+NAS T+ L D +
Sbjct: 606 KRPPKTEGDMLFDRLNTSKLNNHLTSLMPGLSAKVFRTHNASYTMSEQLKNTPSDASIPD 665
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKI----------------------- 828
K+ Y RAN+ VAI+CNHQRTVSK H AQM R+ +K+
Sbjct: 666 KVLAYNRANRMVAILCNHQRTVSKAHDAQMERIEDKVILKLFIIIIEEWIKEHQITLLEK 725
Query: 829 ---EDLKGVLKDLRVDLDRAKKGKPP-----LMKDSD------------GK---RKRNLA 865
+ +K KD L++ +K P L++ D GK + R L
Sbjct: 726 ERDKIIKKFEKDNEKLLNQNEKPMPQSHLEKLLEKVDEMEKSFKIENETGKVEPKTRGLT 785
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYL----DPRITVAWCKRHEVP 921
+ L+R++ + N +I M+ M K++ KT ALGTSKINY+ DPR+T AWC ++ V
Sbjct: 786 IKKLDRQIEKINERIRNMKAMMIDKDENKTTALGTSKINYMFLYSDPRLTYAWCAKYGVN 845
Query: 922 IEKIFNKSLLAKFAWAMDVDPEFRF 946
IE++F K+L KFAWA ++ F
Sbjct: 846 IERVFTKTLREKFAWAASTTADWEF 870
>gi|332030376|gb|EGI70083.1| DNA topoisomerase 1 [Acromyrmex echinatior]
Length = 1016
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/556 (48%), Positives = 362/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP +K Y GKE+ L+ E EEVAT +A MLD DY KP F
Sbjct: 469 KWYFLEHKGPVFAPPYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFN 528
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK ++ + ++ E++K M+ +EK +KE+ + +
Sbjct: 529 NNFFHDWREVMTESERAKITDLSKCNFKEMHAYFLQKSEERKAMTKDEKLKIKEKNEEIQ 588
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+
Sbjct: 589 KEYGFCSIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKP 648
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 649 P-AGHKWKEVRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQS 706
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y D+ S++ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 707 IDKIRAEYRDDWRSKEMRIRQRAVALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHIKL 766
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N
Sbjct: 767 HEQKGGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMN 826
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T + A KI Y RAN+ VAI+CNHQR
Sbjct: 827 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTDPNETEAEKILSYNRANRAVAILCNHQR 886
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KI+ K V+ + + AK+ G K + E ++
Sbjct: 887 SVPKTHAKSMENLKAKIDTKKAVIAECEQQVKDAKRDA------KHGSVKEKVTYEKKKK 940
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++ K+E +E+ K +AL TSK+NYLDPRI+VAWCK+H VPIEKI+NK+
Sbjct: 941 QLERFKDQLTKLEVQATDREENKEIALSTSKLNYLDPRISVAWCKKHNVPIEKIYNKTQR 1000
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1001 DKFRWAIDMAGPDYVF 1016
>gi|195132412|ref|XP_002010637.1| GI21653 [Drosophila mojavensis]
gi|193907425|gb|EDW06292.1| GI21653 [Drosophila mojavensis]
Length = 1043
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 280/562 (49%), Positives = 366/562 (65%), Gaps = 31/562 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWTTL H G +F PPY +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 496 KWTTLEHKGPVFAPPYERVPRNVRFFYDGKPMELSEETEEAATFYAKMLNHDYCTKDVFN 555
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K + EEK A K E
Sbjct: 556 NNFFKDFRKTMTPKEKEIIKDFRKCNFQEMFEYFQAESEKRKAATKEEKLAKKVESEALI 615
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RI D++IN GK+ +P+
Sbjct: 616 KEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIAARDVSINCGKNSKVPQ- 674
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PGE WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L +
Sbjct: 675 PPPGERWKEVRHDNTVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKF 733
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 734 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 793
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK DDLFD+L+T LN
Sbjct: 794 HKELNNKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMENKKDGDDLFDRLNTQVLN 853
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T + VA K+ Y RAN+ VAI+CNHQR
Sbjct: 854 EHLKELMEGLTAKVFRTYNASKTLQNQLDLLTDPNASVAEKLLTYNRANRAVAILCNHQR 913
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRV---DLDR-AKKG--KPPLMKDSDGKRKRNLA 865
+V K H M L EKI + L + DL + AK+G K L D GK+
Sbjct: 914 SVPKGHQKSMENLKEKIRAKRDALDECESEYHDLRKAAKRGSVKEKLNADKKGKQ----- 968
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
LER Q ++K+E +++ KT+ALGTSK+NYLDPRITVAWCK++ VPIEKI
Sbjct: 969 ---LERLKDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRITVAWCKKYGVPIEKI 1021
Query: 926 FNKSLLAKFAWAMDV-DPEFRF 946
FNK+ KF WA+ + D +RF
Sbjct: 1022 FNKTHRTKFLWAIHMADENYRF 1043
>gi|115388445|ref|XP_001211728.1| DNA topoisomerase I [Aspergillus terreus NIH2624]
gi|114195812|gb|EAU37512.1| DNA topoisomerase I [Aspergillus terreus NIH2624]
Length = 872
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 340/853 (39%), Positives = 463/853 (54%), Gaps = 166/853 (19%)
Query: 197 SEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLS---SRFPKSN 253
SEDD+PLS R + + K+ DPE +D++VPL + PK++
Sbjct: 83 SEDDQPLSKRRRTSVKH--------------------EDPE-TDEDVPLGLNGRKLPKAS 121
Query: 254 AGTSGAKPIDSD---------EKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSG 304
G + DSD EKK + K ++ G QKS++ P K+P
Sbjct: 122 ETAIGEES-DSDVPIERKLAMEKKRIELKGEKEG-------QKSTAAPKKKP-------- 165
Query: 305 ASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATK 364
++ K ++ D K VK+ KV+ + P+ + +AKAT
Sbjct: 166 -TNGVKKELVDGQKPSAVKKTATKVKSEPKSAQSTPVKK--------------GSAKATP 210
Query: 365 SVSSSSNKINKKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPH 420
KK + + + P DG KWTTL HNGV+FPPPY LP
Sbjct: 211 V---------KKEESADAEEAEEEEYRWWEDPTKSDGTIKWTTLEHNGVVFPPPYEPLPK 261
Query: 421 GVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFWNDWRKLLGK------- 472
VKM Y G V L P+ EEVA F ML+ T + + P F++NF+ D++ +L K
Sbjct: 262 NVKMKYDGVPVTLHPDAEEVAGFFGSMLNSTQHTENPTFQKNFFMDFKDILKKTGGATDP 321
Query: 473 --NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVK 529
N V I+ + CDF+PI+D+++ ++ +K+ + + EKK LK EK++QE YM+ + DG K
Sbjct: 322 KGNKVDIKEFKKCDFQPIFDYYEAKRIEKRNLPAAEKKRLKAEKDEQEAPYMYCMWDGRK 381
Query: 530 EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKH 589
+KVGNFRVEPP LFRGRGEHPK G++K R+QP ITINIGK+ +P P G WKEVKH
Sbjct: 382 QKVGNFRVEPPSLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPP-EGHKWKEVKH 440
Query: 590 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDF 649
D TWLA W + IN +KYV LAA+S +KGQSD +K+EKAR+LK YI IR Y K+
Sbjct: 441 DQEGTWLAMWQENIN-GNYKYVMLAANSDVKGQSDYKKFEKARELKKYIGKIRKDYQKNL 499
Query: 650 VSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLG 709
RQ A A YLID+ ALRAGNEK +DEA+TVGCC+LK NV PPNK+ FDFLG
Sbjct: 500 KHELMVERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKPPNKVVFDFLG 559
Query: 710 KDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
KDSI++ + V+V+ V+K + F+ KK+ D++FD+L T+ LN HL MPGLTAKVFR
Sbjct: 560 KDSIRFYDEVDVDPQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 619
Query: 769 TYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKI 828
TYNAS T+ +L G++A K+ Y AN+ VAI+CNH+RTV +H+ QM +++E+I
Sbjct: 620 TYNASHTMAELLKDMKATGNIAEKVKAYNDANRRVAILCNHKRTVGASHANQMEKMSERI 679
Query: 829 EDL---KGVLKDLRVDLD---RAKKGKPPLMKDSD------------------------- 857
+ L + LK +DLD + KKG D D
Sbjct: 680 KGLRYQRWRLKQQMLDLDPNLKKKKGAKFFELDEDIDKEWIKEHQAFLVEEQRQKIRKKF 739
Query: 858 GKRKRNLAPEA------------------LERKMAQTN--------------AKIE---- 881
K LA E LE+K + N KIE
Sbjct: 740 EKDNEKLAAEGEKEMKASELEERLQVATELEKKYNRENKTGKVEAEGKAPTVEKIEANIQ 799
Query: 882 KMERDMKTKE-------DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E+ ++T E D K VALGTSKINY+DPR+TV + K+ VPIEK F+K+L KF
Sbjct: 800 KLEQRIETMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFFSKALREKF 859
Query: 935 AWAM-DVDPEFRF 946
WA+ VD ++ F
Sbjct: 860 EWAIKSVDEDWEF 872
>gi|322800615|gb|EFZ21584.1| hypothetical protein SINV_04104 [Solenopsis invicta]
Length = 1025
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/556 (49%), Positives = 367/556 (66%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F
Sbjct: 478 KWNFLEHKGPVFAPPYEPLPSSVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFN 537
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK + + ++ E++K M+ EEKK +KE+ + +
Sbjct: 538 NNFFHDWREVMTESERAKITDLFKCNFKEMQAYFVQKSEERKAMTKEEKKKIKEKNEEIQ 597
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN +D IP+
Sbjct: 598 KEYGFCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSRDSNIPKP 657
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HD+TVTWLA W + I + KY+ L SS LKG+ D +KYE ARKL
Sbjct: 658 P-PGHKWKEVRHDSTVTWLASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQS 715
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 716 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKL 775
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N
Sbjct: 776 CEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMN 835
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 836 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTDPNDTEAEKILSYNRANRAVAILCNHQR 895
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + + + + AK+ G K +A + ++
Sbjct: 896 SVPKTHAKSMENLKAKIEAKKEAITECELQVKDAKRDAKH------GSVKEKVAYDKKKK 949
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++ K+E +E+ K +AL TSK+NYLDPRI+VAWCK+H VPIEKI+NK+
Sbjct: 950 QLERLKDQLTKLEVQATDREENKEIALSTSKLNYLDPRISVAWCKKHNVPIEKIYNKTQR 1009
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1010 DKFRWAIDMAGPDYVF 1025
>gi|443923367|gb|ELU42619.1| topoisomerase I [Rhizoctonia solani AG-1 IA]
Length = 925
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 291/636 (45%), Positives = 390/636 (61%), Gaps = 88/636 (13%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKM---LYKGKEVNLTPEQEEVATMFAVMLDT 450
P G K W + NG P L + + LY KEV+L PE EE+A F +L+T
Sbjct: 295 PSPGGRLKLWAMVPPNGQ--PSSMLAYSSLLPTNLYPSKEVDLPPESEELAGWFGALLET 352
Query: 451 DYMQKPKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
++ F++NF+ DW+ +L K+H VI++ + CDF+P++D+ + +K KKK M++
Sbjct: 353 EHAADEVFQKNFFGDWQAVL-KDHPPRNGIVIKDFDKCDFRPMFDFFEAEKAKKKSMTAA 411
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA+KE K+K EEKY +DG EKVGNFR+EPPGLFRGRG+HPK GK K R++P DI
Sbjct: 412 EKKAIKEAKSKDEEKYTACTMDGRPEKVGNFRIEPPGLFRGRGKHPKKGKHKYRLRPEDI 471
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIG++ PIP IPG+ W +++HD TVTWLA W + +N FKYVFLAA SSLKGQSD
Sbjct: 472 TINIGQNAPIPVPNIPGK-WGKIQHDQTVTWLASWKENVN-GNFKYVFLAAGSSLKGQSD 529
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
+K+EKAR+LK ++ IR YT+D ++ RQ A A Y ID+LALRAGNEK +DEADT
Sbjct: 530 MQKFEKARELKKHVDRIREDYTRDLKNKTSADRQRATAMYFIDRLALRAGNEKGEDEADT 589
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ-TGKKQNDDLF 743
VGCC+L+ ++ PPNKL FDFLGKDSI+Y N VEVE ++K I F+ GK + D LF
Sbjct: 590 VGCCSLRYEHIMLEPPNKLIFDFLGKDSIRYYNVVEVEPQIFKNIRIFKGDGKSEGDALF 649
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKE 802
D++ T LN HL M GL+AKVFRTYNASIT L++ T D D+ K+ Y RAN+
Sbjct: 650 DRVSTGGLNKHLNSYMKGLSAKVFRTYNASITFQKQLDENTPADADITQKLAAYNRANRM 709
Query: 803 VAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR---VDLDRAKKGKPPLMKD---- 855
VAI+CNHQ++VSK H A M +L +++ LK LR LD+ K K P + +
Sbjct: 710 VAILCNHQKSVSKNHDASMGKLGDQLRGLKYNRMKLRHQLFTLDKKLKKKHPELDELESD 769
Query: 856 ---------SDGKRKRNLA----------------------PEALERKMAQTNAKIEKME 884
D KR+ ++A AL+ K+ NA+ ++++
Sbjct: 770 LDDEFIERWEDAKREEDIAKARKKFEKDNEKRVEKGEKEEKESALDEKIDDINAEYDRLK 829
Query: 885 RD----------------------------------MKTKEDLKTVALGTSKINYLDPRI 910
+ M+ KE+ K VALGTSKINYLDPRI
Sbjct: 830 EERGTEQAAGPKGRTPEKVLDAITKLDEKIKMFKFKMQDKEEGKEVALGTSKINYLDPRI 889
Query: 911 TVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
T AWCK+H+VPIEKIF K+LL KF WAM++D +++F
Sbjct: 890 TAAWCKKHDVPIEKIFAKTLLNKFPWAMEIDEDWKF 925
>gi|327355506|gb|EGE84363.1| DNA topoisomerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 1048
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 335/903 (37%), Positives = 490/903 (54%), Gaps = 139/903 (15%)
Query: 160 SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIG 219
S D + SP+ N A K G ++ DSED + A +KG S + + G
Sbjct: 169 SKSTDPSVSASPKANGYA-------KPGLSIRHGLVDSEDVEMQDANVKGASLSKRKSRG 221
Query: 220 ASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGS 279
+ + +E PE S+++ PLS R + + DSD+ P+ SK+ + S
Sbjct: 222 SDMMRKSYAE------PESSEEDKPLSKR--RRVSAEQRINDFDSDDA-PIISKLAKGKS 272
Query: 280 TSRETQQKSSS---------VPVKRPLQKASSSGASSAKKPKVSDTS------------- 317
++ S+ + K +++ + A + +K + ++ +
Sbjct: 273 EAKVVTMAESATDGSLGKILMAEKTRIEERAGKEAKAIRKHESAEATIKKKIAATAAATD 332
Query: 318 KEVKVKQVTVK-VEKKADDDDHIPISQRM--KNSAPSVKKSVTNTAKATKSVSSSSNKIN 374
K K K+ V ++K D+ IP+++++ K S + K +T K V+ +
Sbjct: 333 KGTKGKKTLVNGIKKSESSDEDIPLARKVPAKKSVKAFKSEPADTKKGKAKVA-----MK 387
Query: 375 KKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
K++ + ++ + + + P GDG KWTTL HNGVIFPPPY LP VKM Y G
Sbjct: 388 KESSEELEGEEAEEEYRWWEDPAQGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGIP 447
Query: 431 VNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLLGKNH----------VIQNL 479
+ L PE EEVA F ML++ + ++ P F++NF+ D+ + K+ I++
Sbjct: 448 ITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKKSGGAKDPNGNPVAIKSF 507
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
+ CDFKPI+++++ + +KK + + EKK LK EK++ E YM+ + DG K+KVGNFRVEP
Sbjct: 508 DSCDFKPIFEYYEAARLEKKNLPAAEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEP 567
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
P LFRGRGEHPK GK+K R+ P ITINIGKD +P P PG WKEVKHD TWLA W
Sbjct: 568 PALFRGRGEHPKTGKVKTRVMPEQITINIGKDAKVPPPP-PGHKWKEVKHDQEGTWLAMW 626
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K + RQ
Sbjct: 627 QENIN-GNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYKKSLKHELMSERQK 685
Query: 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 719
A A YLID+ ALRAGNEK +DEADTVGCC+LK +V PP+ + FDFLGKDSI++ + V
Sbjct: 686 ATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKPPSTVIFDFLGKDSIRFYDEV 745
Query: 720 EVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
EV+ V+K + F+ K++ D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+
Sbjct: 746 EVDPQVFKNLKIFKKAPKREGDEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTMAT 805
Query: 779 MLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVL 835
+L G +A KI Y AN++VAI+CNH+RTV+ +H++QM +L ++I+ LK +
Sbjct: 806 LLKDLKSTGSIAEKIKDYNDANRKVAILCNHKRTVTASHASQMEKLGDRIKGLKYQEWRV 865
Query: 836 KDLRVDLD-RAKKGKPPLMKDSD-----------------------------------GK 859
K + +DLD + KK K P + D +
Sbjct: 866 KQMMLDLDPKIKKKKGPAFFELDESLDQEWIKEHQDYLVEEQRQKIKKKFEKDNEKRAAE 925
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTK----------------------------- 890
++ + P+ LE ++ A K +R+ KTK
Sbjct: 926 GEKEMKPKELEERLEVAKALEAKFKRENKTKKVEAEGKGVTIEKLENQLLKLSQRIENMS 985
Query: 891 ------EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPE 943
E+ K VALGTSKINY+DPR+TV + K+ VPIEK F+K+L KF WA+ V+ +
Sbjct: 986 LQAEDRENNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFFSKTLREKFDWAIKSVEED 1045
Query: 944 FRF 946
+ F
Sbjct: 1046 WEF 1048
>gi|195448226|ref|XP_002071565.1| GK25865 [Drosophila willistoni]
gi|194167650|gb|EDW82551.1| GK25865 [Drosophila willistoni]
Length = 997
Score = 514 bits (1323), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/556 (48%), Positives = 363/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F PPY +P V+ Y GK ++LT E EE AT +A ML+ DY K F
Sbjct: 450 KWSTLEHKGPVFAPPYERVPRNVRFFYDGKPLDLTEETEEAATFYAKMLNHDYCTKDVFN 509
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + E++K + +EK A K E
Sbjct: 510 TNFFKDFRKTMTDREKEIIKDFRKCNFQEMFEFFQAESERRKAATKDEKLAKKNENEALV 569
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RI S+++IN GK+ +P
Sbjct: 570 KEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIGASEVSINCGKNSKVP-T 628
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG+ WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 629 PPPGQRWKEVRHDNTVTWLASWVENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 687
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 688 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 747
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 748 HRELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMENKKEGDDLFDRLNTQVLN 807
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+K T GD VA K+ Y RAN+ VAI+CNHQR
Sbjct: 808 EHLKELMDGLTAKVFRTYNASKTLQDQLDKLTDGDATVAEKLLAYNRANRAVAILCNHQR 867
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K H M L EKI + + D + KK G K + + +
Sbjct: 868 SVPKGHQKSMENLKEKIRAKRDAIDDCESEYHDLKKAAKR------GSVKEKVNADKKGK 921
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + +++K+E +++ KT+AL TSK+NYLDPRI+VAWCK++ VPIEKIFNK+
Sbjct: 922 QLERLKEQLKKLELQETDRDENKTIALSTSKLNYLDPRISVAWCKKNGVPIEKIFNKTQR 981
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 982 TKFLWAIHMADENYRF 997
>gi|307182085|gb|EFN69463.1| DNA topoisomerase 1 [Camponotus floridanus]
Length = 1038
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 273/556 (49%), Positives = 365/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GKE L+ + EEVAT +A MLD DY K F
Sbjct: 491 KWHFLEHKGPVFAPPYEPLPPNVKFYYNGKETKLSQDAEEVATFYARMLDHDYTTKDAFN 550
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWR+++ ++ I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ ++ +
Sbjct: 551 NNFFHDWREVMTESERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNDEIQ 610
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+
Sbjct: 611 KEYGFCVIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKP 670
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 671 P-AGHKWKEVRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQS 728
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 729 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKL 788
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N
Sbjct: 789 HEQRDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMN 848
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 849 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTDPNDTEAEKILSYNRANRAVAILCNHQR 908
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KI+ K + + + + AK+ G K + E ++
Sbjct: 909 SVPKTHAKSMENLKAKIDAKKEAIAECELQVKDAKRDAKH------GSVKEKVTYEKKKK 962
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+H VPIEKI+NK+
Sbjct: 963 QLERLKEQLTKLEVQATDREENKEIALGTSKLNYLDPRISVAWCKKHNVPIEKIYNKTQR 1022
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1023 DKFRWAIDMAGPDYVF 1038
>gi|212539988|ref|XP_002150149.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
gi|212539990|ref|XP_002150150.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
gi|210067448|gb|EEA21540.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
gi|210067449|gb|EEA21541.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
Length = 860
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 344/889 (38%), Positives = 482/889 (54%), Gaps = 171/889 (19%)
Query: 197 SEDDKPLSARLKGN-SKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAG 255
S+DD PL LK + S +N G+ +VN+K D+ + V S R + +AG
Sbjct: 4 SDDDAPL---LKASRSGALNPGVSIRFGPVDDEDVNMK----DAANGVNGSKRRARVSAG 56
Query: 256 -TSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSS-VPVKRPLQKASSSGASSAKKPKV 313
S A+ S+++KPL+ K + ST ++ S VP+ R A+ AK PK
Sbjct: 57 KQSYAEAESSEDEKPLSKK--RRVSTKKQIDSDSDEDVPLARK--------ANGAKLPKA 106
Query: 314 SDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKA---------TK 364
S+T+ + +++D D +PI ++ +++K + AKA TK
Sbjct: 107 SETA-----------IGEESDSD--MPIEHKLSKQKANIEKKAEHEAKAIRKAEATSSTK 153
Query: 365 SVSSSSNKINKKT-----------KKVIKNSQYSKSTKML-------------------- 393
S+++N K+ KK IK+ + + K
Sbjct: 154 KASAAANGKKPKSNGVKTENGVGAKKAIKSEPSTPAKKGKGKATPVKAESEDVEGAEEEE 213
Query: 394 -------PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMF 444
P GDG KW TL HNGV+FPP Y LP VKM Y G V L PE EEVA F
Sbjct: 214 EYRWWEDPTKGDGTIKWNTLEHNGVVFPPEYEPLPKNVKMKYDGVPVVLHPEAEEVAGFF 273
Query: 445 AVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQE 493
ML++ + ++ P F++NF+ D++ +L G+ I+ + CDFKPI+++++
Sbjct: 274 GAMLNSTHNVENPTFQKNFFEDFKAILKKTGGAKTQKGEPINIKEFKKCDFKPIFEYYEG 333
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
++ +KK +S+ EKKALK E+++ E YM+ I DG K+KVGNFRVEPP LFRGRGEHPK G
Sbjct: 334 KRLEKKNLSAAEKKALKAERDEAEAPYMYCIWDGRKQKVGNFRVEPPSLFRGRGEHPKTG 393
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
K+K R+ P ITINIGKD +P P G WKEV+HD TWLA W + +N +KYV L
Sbjct: 394 KVKTRVMPEQITINIGKDAKVPPPP-EGHKWKEVRHDQEGTWLAMWQENVNGN-YKYVML 451
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
AA+S +KGQSD +K+EKAR+LK +I IR Y K S RQ A A YLIDK ALRA
Sbjct: 452 AANSDIKGQSDYKKFEKARELKKHIDKIREDYRKGLKSDLMADRQRATAVYLIDKFALRA 511
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEK +DEADTVGCC+LK N+ PPN + FDFLGKDSI++ + VEV+ V+K + F+
Sbjct: 512 GNEKGEDEADTVGCCSLKYENISLRPPNTVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFK 571
Query: 734 TG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVK 792
KK+ D++FD+L T+ LN HL MPGLTAKVFRTYNAS T +L +G VA K
Sbjct: 572 KAPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTFATLLKDMKAEGTVAEK 631
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAK 846
+ Y AN+ VAI+CNH+RTV+ H+ QM +L ++I+ L K +K + +D+D + K
Sbjct: 632 VKQYNDANRRVAILCNHKRTVTAGHANQMEKLGDRIKGLRYQKWRVKMMMLDIDPSQKKK 691
Query: 847 KGKPPLMKDSD---------------------------------GKRKRNLAPEALERKM 873
KG D D ++ + P+ LE ++
Sbjct: 692 KGSKYFELDEDLDQAWIQEHQAFLIEEQKQKITKKFEKDNEKLAADGEKEMKPKELEERL 751
Query: 874 A------------------------QTNAKIE----KMERDMKT-------KEDLKTVAL 898
A QT K+E K+E+ ++ KE+ K VAL
Sbjct: 752 AVLKDMEKKFQKENKTGKVEVEGKGQTVEKLENNVTKLEQRIENMSLQAEDKENNKEVAL 811
Query: 899 GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
GTSKINY+DPR+TV + K+ VPIEK F+K+L KF WA+ V+ ++ F
Sbjct: 812 GTSKINYIDPRLTVVFTKKFNVPIEKFFSKTLREKFDWAIKSVEEDWEF 860
>gi|261188450|ref|XP_002620640.1| DNA topoisomerase I [Ajellomyces dermatitidis SLH14081]
gi|239593240|gb|EEQ75821.1| DNA topoisomerase I [Ajellomyces dermatitidis SLH14081]
gi|239609381|gb|EEQ86368.1| DNA topoisomerase I [Ajellomyces dermatitidis ER-3]
Length = 911
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 335/903 (37%), Positives = 490/903 (54%), Gaps = 139/903 (15%)
Query: 160 SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIG 219
S D + SP+ N A K G ++ DSED + A +KG S + + G
Sbjct: 32 SKSTDPSVSASPKANGYA-------KPGLSIRHGLVDSEDVEMQDANVKGASLSKRKSRG 84
Query: 220 ASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGS 279
+ + +E PE S+++ PLS R + + DSD+ P+ SK+ + S
Sbjct: 85 SDMMRKSYAE------PESSEEDKPLSKR--RRVSAEQRINDFDSDDA-PIISKLAKGKS 135
Query: 280 TSRETQQKSSS---------VPVKRPLQKASSSGASSAKKPKVSDTS------------- 317
++ S+ + K +++ + A + +K + ++ +
Sbjct: 136 EAKVVTMAESATDGSLGKILMAEKTRIEERAGKEAKAIRKHESAEATIKKKIAATAAATD 195
Query: 318 KEVKVKQVTVK-VEKKADDDDHIPISQRM--KNSAPSVKKSVTNTAKATKSVSSSSNKIN 374
K K K+ V ++K D+ IP+++++ K S + K +T K V+ +
Sbjct: 196 KGTKGKKTLVNGIKKSESSDEDIPLARKVPAKKSVKAFKSEPADTKKGKAKVA-----MK 250
Query: 375 KKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
K++ + ++ + + + P GDG KWTTL HNGVIFPPPY LP VKM Y G
Sbjct: 251 KESSEELEGEEAEEEYRWWEDPAQGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGIP 310
Query: 431 VNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLLGKNH----------VIQNL 479
+ L PE EEVA F ML++ + ++ P F++NF+ D+ + K+ I++
Sbjct: 311 ITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKKSGGAKDPNGNPVAIKSF 370
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
+ CDFKPI+++++ + +KK + + EKK LK EK++ E YM+ + DG K+KVGNFRVEP
Sbjct: 371 DSCDFKPIFEYYEAARLEKKNLPAAEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEP 430
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
P LFRGRGEHPK GK+K R+ P ITINIGKD +P P PG WKEVKHD TWLA W
Sbjct: 431 PALFRGRGEHPKTGKVKTRVMPEQITINIGKDAKVPPPP-PGHKWKEVKHDQEGTWLAMW 489
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K + RQ
Sbjct: 490 QENING-NYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYKKSLKHELMSERQK 548
Query: 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 719
A A YLID+ ALRAGNEK +DEADTVGCC+LK +V PP+ + FDFLGKDSI++ + V
Sbjct: 549 ATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKPPSTVIFDFLGKDSIRFYDEV 608
Query: 720 EVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
EV+ V+K + F+ K++ D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+
Sbjct: 609 EVDPQVFKNLKIFKKAPKREGDEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTMAT 668
Query: 779 MLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVL 835
+L G +A KI Y AN++VAI+CNH+RTV+ +H++QM +L ++I+ LK +
Sbjct: 669 LLKDLKSTGSIAEKIKDYNDANRKVAILCNHKRTVTASHASQMEKLGDRIKGLKYQEWRV 728
Query: 836 KDLRVDLD-RAKKGKPPLMKDSD-----------------------------------GK 859
K + +DLD + KK K P + D +
Sbjct: 729 KQMMLDLDPKIKKKKGPAFFELDESLDQEWIKEHQDYLVEEQRQKIKKKFEKDNEKRAAE 788
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTK----------------------------- 890
++ + P+ LE ++ A K +R+ KTK
Sbjct: 789 GEKEMKPKELEERLEVAKALEAKFKRENKTKKVEAEGKGVTIEKLENQLLKLSQRIENMS 848
Query: 891 ------EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPE 943
E+ K VALGTSKINY+DPR+TV + K+ VPIEK F+K+L KF WA+ V+ +
Sbjct: 849 LQAEDRENNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFFSKTLREKFDWAIKSVEED 908
Query: 944 FRF 946
+ F
Sbjct: 909 WEF 911
>gi|195396943|ref|XP_002057088.1| GJ16891 [Drosophila virilis]
gi|194146855|gb|EDW62574.1| GJ16891 [Drosophila virilis]
Length = 1045
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 278/562 (49%), Positives = 364/562 (64%), Gaps = 31/562 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWTTL H G +F PPY +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 498 KWTTLEHKGPVFAPPYERMPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKDVFN 557
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++ + + EK+K + EEK A K E
Sbjct: 558 NNFFKDFRKSMTPKEKEIIKDFRKCNFQEMHQFFLAESEKRKAATKEEKLAKKNENEALI 617
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RI +D++IN GK +P+
Sbjct: 618 KEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIAAADVSINCGKQSKVPQ- 676
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PGE WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L +
Sbjct: 677 PPPGERWKEVRHDNTVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKF 735
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 736 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 795
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK DDLFD+L+T LN
Sbjct: 796 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMENKKDGDDLFDRLNTQVLN 855
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T + VA K+ Y RAN+ VAI+CNHQR
Sbjct: 856 EHLKELMDGLTAKVFRTYNASKTLQNQLDLLTDSNASVAEKLLTYNRANRAVAILCNHQR 915
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRV---DLDR-AKKG--KPPLMKDSDGKRKRNLA 865
+V K H M L EKI + + D DL + AK+G K ++ D GK
Sbjct: 916 SVPKGHQKSMENLKEKIRAKRDAIDDCEAEYHDLKKAAKRGSVKERVIADKKGK------ 969
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
LER Q ++K+E +++ KT+ALGTSK+NYLDPRITVAWCK++ VPIEKI
Sbjct: 970 --ILERLKDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRITVAWCKKYGVPIEKI 1023
Query: 926 FNKSLLAKFAWAMDV-DPEFRF 946
FNK+ KF WA+ + D +RF
Sbjct: 1024 FNKTHRTKFLWAIHMADENYRF 1045
>gi|335286080|ref|XP_003355015.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Sus scrofa]
Length = 1114
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 269/557 (48%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
+WT L H G F PPY LP GV+ Y GK + L+ EEVAT + ML+ +Y K FR
Sbjct: 565 RWTQLEHRGPCFAPPYEPLPDGVRFYYDGKPMKLSLAAEEVATFYGKMLEHEYTTKEVFR 624
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + + VI+ L CDF I+ ++ ++ + EEK+ LKEE K +
Sbjct: 625 HNFFRDWRKEMTAAERKVIKRLSKCDFTEIHRHFADRAAARRALPREEKQRLKEEAEKLQ 684
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+TIN G+D +PE
Sbjct: 685 QEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVLPEDVTINCGRDSKVPE- 743
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ D TVTWLA W + + KYV L SS LKG+ D EKYE AR+LK
Sbjct: 744 PPAGHQWKEVRSDRTVTWLAAWTENVQ-NATKYVMLNPSSKLKGERDWEKYEVARRLKGV 802
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +V+
Sbjct: 803 VDEIRSRYRADWKSREMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQ 862
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P P ++FDFLGKDSI+Y N V VE PVY+ + F K ++LFD+L TA L
Sbjct: 863 LHPEADGCPYVVEFDFLGKDSIRYYNKVPVEKPVYRNLQLFLENKDPGEELFDRLTTASL 922
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL G L T + +A K+ Y RAN+ VA++CNHQ
Sbjct: 923 NKHLQDLMDGLTAKVFRTYNASITLQGQLRALTRAEDSIAAKLLSYNRANRAVAVLCNHQ 982
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KIE K + + + +L++A+ G DG+ + L E
Sbjct: 983 RAPPKTFEKSMQALRSKIEAKKQQVAEAKAELEKARAGH---ASREDGRSEAFL--EKRR 1037
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R++ + ++ ++ KE+ K VALGTSK+NYLDPRI++AWC+R VP+EKI+NK+
Sbjct: 1038 RRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNYLDPRISIAWCRRFGVPVEKIYNKTQ 1097
Query: 931 LAKFAWAMDVDPE-FRF 946
KFAWA+D+ E F F
Sbjct: 1098 REKFAWALDMAGEDFEF 1114
>gi|307205971|gb|EFN84097.1| DNA topoisomerase 1 [Harpegnathos saltator]
Length = 1033
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 273/556 (49%), Positives = 364/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GKE+ L+ + EEVAT +A MLD DY KP F
Sbjct: 486 KWHFLQHKGPVFAPPYEPLPPTVKFYYNGKEMKLSQDTEEVATFYARMLDHDYTTKPAFN 545
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWR ++ ++ I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +
Sbjct: 546 SNFFGDWRDVMTESERAKITDLSKCNFKEMHTYFLQKSEERKAMTKEEKQKIKEKNEETQ 605
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K+ IP+
Sbjct: 606 KEYGFCVIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKNSNIPKP 665
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD VTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 666 P-AGHKWKEVRHDPNVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQS 723
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 724 IDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKL 783
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N
Sbjct: 784 HEQKDGKDYIVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMN 843
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L+K T D A KI Y RAN+ VAI+CNHQR
Sbjct: 844 KHLNELMEGLTAKVFRTYNASWTLQQQLDKLTDPNDTEAEKILSYNRANRAVAILCNHQR 903
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V KTH+ M L KIE K + + + + AK+ G K + E ++
Sbjct: 904 SVPKTHAKSMENLKAKIEAKKETISEAELQVKDAKRDA------KHGSVKEKIVYEKKKK 957
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+H VP+EKI+NK+
Sbjct: 958 QLERLKEQLTKLEVQATDREENKEIALGTSKLNYLDPRISVAWCKKHNVPVEKIYNKTQR 1017
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1018 DKFRWAIDMAGPDYVF 1033
>gi|170590069|ref|XP_001899795.1| DNA topoisomerase I [Brugia malayi]
gi|158592714|gb|EDP31311.1| DNA topoisomerase I, putative [Brugia malayi]
Length = 751
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 312/740 (42%), Positives = 431/740 (58%), Gaps = 81/740 (10%)
Query: 240 DDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQK 299
DD++PL+ + K D+ PL+ K + S E +SS +K+PL
Sbjct: 53 DDDIPLAKKL-------KTMKDPPDDDDVPLSEKAKPQKRLS-EVMGTASSSRIKKPL-- 102
Query: 300 ASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVT-- 357
SSS SS KK +K E ++DDD +P+S R KKS +
Sbjct: 103 -SSSALSSTKK---------------MLKTELESDDD--VPLSVRAATLTKKRKKSESXD 144
Query: 358 -------------NTAKATKSVSSSSNKI---NKKTKKVIKNSQYSKSTKMLPGSGDGQK 401
N+++ K+ +S+S KI N+K + N + + ++
Sbjct: 145 EDYKLEKKKEKRKNSSERKKASTSNSEKIHIKNEKANGIASNKRKRREEDEEEVWKWWEE 204
Query: 402 -------KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
KW +L H G IF PPY LP + Y GK + L P EEVA+ +A +L+ +Y
Sbjct: 205 EKKPSGIKWYSLSHKGPIFAPPYVSLPESIHFKYDGKVMKLAPLTEEVASFYAKILEHEY 264
Query: 453 MQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
K F +NF+ DWRK++ + I +L CDF+ ++D + + +E+++ +S EEK+ LK
Sbjct: 265 TTKDIFNKNFFTDWRKVMTPAEREKITDLTKCDFREMHDHYIKLREERRSLSKEEKQKLK 324
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
E K ++ + Y A +DG K+K+GNFR+EPP LFRGRG HPKMG+LKKR+ P D+ IN K
Sbjct: 325 EIKQEEAKIYGVAYIDGHKQKIGNFRIEPPDLFRGRGGHPKMGRLKKRVNPEDVIINCSK 384
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IP+ P G WKEV+HDNTVTWL W D I KY+ L SS +KG+ D EK+E
Sbjct: 385 DSEIPKPP-EGHRWKEVRHDNTVTWLCSWTDNI-LGSIKYIMLNPSSKIKGEKDYEKFET 442
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCT 689
AR+LKD + SIR YTKD S++ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+
Sbjct: 443 ARRLKDIVGSIRENYTKDLKSKEMRVRQRAVALYFIDKLALRAGNEKDVDEAADTVGCCS 502
Query: 690 LKVGNV---ECIPPNK--LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
L+ ++ E + N ++FDFLGKDSI+Y N V VE V+K + F K +DDLFD
Sbjct: 503 LRCEHIQLHEKLDDNDYVVEFDFLGKDSIRYYNKVPVEKRVFKNLKLFMENKSGSDDLFD 562
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV-YQRANKEV 803
+LDTA LN +L+ LMPGLTAKVFRTYNASITL L+K T D A ++ + Y RAN++V
Sbjct: 563 RLDTASLNKYLQSLMPGLTAKVFRTYNASITLQQQLDKLTKDDSTAPELLLCYNRANRQV 622
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR V K+H M L KI +AKK + K+ K +
Sbjct: 623 AILCNHQRAVPKSHEKSMENLKAKI---------------KAKKTELKEAKEELEKAHSD 667
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
A + +++ + ++ K++ K++ K +AL TSK+NYLDPRI+VAWCK+++VPIE
Sbjct: 668 TAKQRATKRVDRVKEQLRKLKIQRTDKDENKQIALSTSKLNYLDPRISVAWCKKYQVPIE 727
Query: 924 KIFNKSLLAKFAWAMDVDPE 943
KIFNK+ KF WA+D+ E
Sbjct: 728 KIFNKTQREKFRWAIDMADE 747
>gi|406698572|gb|EKD01807.1| succinate dehydrogenase flavoprotein subunit precursor
[Trichosporon asahii var. asahii CBS 8904]
Length = 1549
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/613 (46%), Positives = 371/613 (60%), Gaps = 82/613 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTT HNGV+FPPPY LP VKM Y GK V L PE EEVA F M++TD+ +
Sbjct: 243 DNSVKWTTFQHNGVLFPPPYVPLPKNVKMKYDGKPVTLPPESEEVAGFFGAMIETDHAKD 302
Query: 456 PKFRENFWNDWRKLL-----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P FR NF+ D++++ + I +LE CDF IY + + ++EKKK +S EEKKA+K
Sbjct: 303 PVFRANFFRDFKEMCEEYPPAEGVKITSLEKCDFSDIYQYFESEREKKKALSKEEKKAIK 362
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
E K+K EE YM+A++DG KEK GNFR EPP LFRGRGEHP+ G LK R++P DI INIGK
Sbjct: 363 EAKDKLEEPYMYALIDGRKEKTGNFRAEPPSLFRGRGEHPRKGTLKHRLRPEDIVINIGK 422
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D PIP IPG+ WK ++HDNTVTWLA W + +N + KYVFL+A+SS KGQSDR K+EK
Sbjct: 423 DAPIPVPNIPGK-WKGIQHDNTVTWLAHWKENVNGQS-KYVFLSAASSWKGQSDRAKFEK 480
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
AR+L ++ IR Y D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC+L
Sbjct: 481 ARELIKHVDKIRRIYNTDMKSKVMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCSL 540
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDS+++ VEVE V+K I F+ KK DD+FD+L T
Sbjct: 541 RYEHVTLEPPNKVIFDFLGKDSMRFHQEVEVEPQVFKNIKLFKAEPKKTGDDIFDRLTTT 600
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
LN L++ M GLTAKVFRTYNAS T L +G VA KI Y AN++VA++CNH
Sbjct: 601 GLNKWLQDQMKGLTAKVFRTYNASWTFQEQLKNTPKNGTVAEKIAAYNTANRDVAVLCNH 660
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDG------- 858
Q++VSK + ++ +KI LK LR L + KK +P L +D
Sbjct: 661 QKSVSKNFAESFAKANDKIRALKYQRMKLRKQLFNVNPKIKKKRPELAEDESDVDDEFIE 720
Query: 859 KRKRNLAPEALE---RKMAQTNAKIEK-----------MERDMKTKEDLKTVA------- 897
+ + L +A+E +K + N K+E+ ER + K++ K +A
Sbjct: 721 RHEEELKEKAMENARKKFEKENVKLEEDGKKPQGAKVLNERLAEIKDEFKQLAKERKKAS 780
Query: 898 ----------------------------------------LGTSKINYLDPRITVAWCKR 917
LGTSKINY+DPR+TVAW K+
Sbjct: 781 IEPKKNMTEERLLNAISKLDDRIATAKVQLGDRDKLKDVALGTSKINYIDPRLTVAWAKK 840
Query: 918 HEVPIEKIFNKSL 930
++VP+EK+F+K+L
Sbjct: 841 YDVPLEKLFSKTL 853
>gi|255712819|ref|XP_002552692.1| KLTH0C10890p [Lachancea thermotolerans]
gi|238934071|emb|CAR22254.1| KLTH0C10890p [Lachancea thermotolerans CBS 6340]
Length = 756
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 290/632 (45%), Positives = 387/632 (61%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ Q
Sbjct: 127 DDSIKWTTLKHNGVIFPPPYEPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAQN 186
Query: 456 PKFRENFWNDWRKLLGKN------HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ +L +N I+ E CDF ++D+ Q QKE+KKQ+SS+EKK L
Sbjct: 187 PVFQKNFFNDFLDVLRENGGPKNGAEIEKFELCDFSKMFDYFQLQKEQKKQLSSQEKKKL 246
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K EK + EE + + +DG KE+VGNFR+EPPGLFRGRG HPK GKLK+R+ P D+ +N+
Sbjct: 247 KIEKEQFEEPFKFCFLDGRKEQVGNFRIEPPGLFRGRGAHPKTGKLKRRVYPEDVVLNLD 306
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ IP+ P G W E++HD+TV WLA W + I+ FKYV AA+SSLKG SD +K+E
Sbjct: 307 KEAEIPKAP-EGHKWGEIRHDSTVQWLAMWRENIS-NSFKYVRFAANSSLKGMSDFKKFE 364
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+L+ +I +IRA YTK+ S+ RQIAVA Y ID ALRAG EK DDEADTVGCC+
Sbjct: 365 KARQLRGFIDAIRADYTKNLKSKVMLERQIAVACYFIDVFALRAGGEKADDEADTVGCCS 424
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV V+K + F+ KK LFD+LD
Sbjct: 425 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVTKQVFKNLTIFKKPPKKPGHQLFDRLDP 484
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+CN
Sbjct: 485 SILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKMLKYNAANRTVAILCN 544
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPP--------LMKDSD 857
HQRTV+K H+A + + TE+IE+L K LK + LD + K P L+K+ +
Sbjct: 545 HQRTVTKGHAASVQKATERIEELEWQKIRLKRAILQLDEKQAKKDPKFFAEVTDLVKEQE 604
Query: 858 G-----------------------KRKRNLAPEALERKMAQTNAKIEKMER--------- 885
KRK E E ++ + A+++++E+
Sbjct: 605 AAIHKRLIEKEREKYVKKFSRENEKRKFEKQEELPESQLKEWMARVDELEKQYNEELESG 664
Query: 886 ------------------------------DMKTKEDLKTVALGTSKINYLDPRITVAWC 915
+K KED VALGTSKINY+DPR++V +C
Sbjct: 665 KVQLKTNSESAEKLKMQIEKLDQRIETATIQLKDKEDNSQVALGTSKINYIDPRLSVVFC 724
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K++ VPIEK+F KSL KF WA++ D +RF
Sbjct: 725 KKYGVPIEKVFTKSLRDKFKWAIESADENWRF 756
>gi|194763437|ref|XP_001963839.1| GF21232 [Drosophila ananassae]
gi|190618764|gb|EDV34288.1| GF21232 [Drosophila ananassae]
Length = 990
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 272/556 (48%), Positives = 359/556 (64%), Gaps = 33/556 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F PPY +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 457 KWSTLEHKGPVFAPPYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKDVFN 516
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K + EEK A K E
Sbjct: 517 TNFFKDFRKSMTSKEKEIIKDFRKCNFQEMHNYFQAESEKRKAATKEEKLAKKNENEALV 576
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GK+ +P
Sbjct: 577 KEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKESHVP-S 635
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG+ WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 636 PPPGQRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 694
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 695 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 754
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK DDLFD+L+T LN
Sbjct: 755 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKDGDDLFDRLNTQVLN 814
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 815 EHLKELMDGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 874
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K H M L EKI+ + + D + ++ D GK+ LER
Sbjct: 875 SVPKGHQKSMENLKEKIKAKRDAIDDCEAEYH--------VLADKKGKQ--------LER 918
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H VPIEKIFNK+
Sbjct: 919 LKEQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHGVPIEKIFNKTQR 974
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 975 TKFLWAVHMADENYRF 990
>gi|428170450|gb|EKX39375.1| DNA topoisomerase I [Guillardia theta CCMP2712]
Length = 701
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 281/587 (47%), Positives = 368/587 (62%), Gaps = 61/587 (10%)
Query: 401 KKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRE 460
KKW L HNGVIFPP Y PHGVKM Y G+ ++LTPEQE +ATM+A M TDY K F++
Sbjct: 135 KKWRFLEHNGVIFPPNYEPHGVKMKYDGQIISLTPEQEAIATMYAAMSRTDYAGKDVFKK 194
Query: 461 NFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKY 520
NFW ++ + LGKNH I++LE CDF+PI D ++EKKK ++ EEK +K+ K K E Y
Sbjct: 195 NFWKEFSEKLGKNHAIKDLENCDFQPIVDHLDAEREKKKALTKEEKLKIKQAKEKTEAPY 254
Query: 521 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIP 580
+ ++D EK GNFRVEP GLFRGRGEHPKMG++K IQP DIT+N +D P C +P
Sbjct: 255 VTVVLDSHLEKNGNFRVEPAGLFRGRGEHPKMGQVKGVIQPEDITMNCSEDACPPRCSLP 314
Query: 581 GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHS 640
G +W+ + H + TWLAF+ D IN EFKYVFL+A SSLKGQSDREK+EKAR+LK ++
Sbjct: 315 GHAWQSLVHKDEQTWLAFYKDTING-EFKYVFLSAGSSLKGQSDREKFEKARELKKHVAR 373
Query: 641 IRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIP 699
IR T+ S G Q A +LID LA+RAGNEKD ++EADTVGCC+L+V ++
Sbjct: 374 IRQRITQGLKS-SGLEMQQNTALWLIDNLAIRAGNEKDTNEEADTVGCCSLRVEHITLGT 432
Query: 700 PNK---LKFDFLGKDSIQYVNTVEV------------ELPVYKAIGQFQ----------- 733
+ + F+FLGKDSI+Y N V++ E P + + +
Sbjct: 433 DEEGPTIYFNFLGKDSIEYKNLVKLRPKDEEKAKEGEENPCVSFVREGEEKNFRRVVENM 492
Query: 734 -----TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML-------N 781
KK +DD+FD+L+T+ LN +LK+LMPGLTAKVFRTYNAS TLD L
Sbjct: 493 RSLTSNSKKPSDDVFDQLNTSSLNTYLKDLMPGLTAKVFRTYNASFTLDQELYKLEDHPE 552
Query: 782 KGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVD 841
K + + A ++ Y AN +VAI+CNH R VSKT +Q+ ++ EKI+ L L DL+
Sbjct: 553 KSSFLRNDATQLKFYNDANYQVAILCNHSRAVSKTFDSQVEKMDEKIKGLHEELADLKKK 612
Query: 842 LDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTS 901
A D K E +++K+A +I K E + K L VAL TS
Sbjct: 613 KKSA-----------DNK-------EQMKKKIANLEERISKQETQKQIKLKLAGVALSTS 654
Query: 902 KINYLDPRITVAWCKRH-EVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+NYLDPRITVAWCKR P+ K+FNKSL+ KF WA+D D ++RF
Sbjct: 655 KVNYLDPRITVAWCKRFGNFPLNKVFNKSLITKFKWAIDEADEDWRF 701
>gi|145352995|ref|XP_001420818.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581053|gb|ABO99111.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 491
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 259/502 (51%), Positives = 338/502 (67%), Gaps = 25/502 (4%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
M D+DY KP F +NF + ++ L G + I + CDF +Y +EKKK+M+SE
Sbjct: 1 MKDSDYATKPVFVKNFMDGFKAALKNGPHAFITDFSKCDFTKMYMHFLAIREKKKEMTSE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKK +K +K+ EE Y WA +DG +EKVGNFRVEPPGLFRGRGEHPKMGK+K+R+ P DI
Sbjct: 61 EKKRIKAQKDIDEEPYTWATIDGRREKVGNFRVEPPGLFRGRGEHPKMGKIKRRVVPEDI 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGKD +PE P G SWK V H++T TWLA WND IN K++KYV A+S++K +SD
Sbjct: 121 TINIGKDAKVPEPP-AGHSWKAVIHNDTATWLAGWNDVINVKDWKYVQFGATSTVKAESD 179
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
++KYEKAR L YI IR Y ++ +S Q+AVATYL+DKLALRAG EKD+D ADT
Sbjct: 180 QKKYEKARSLHKYIEKIRKDYKRNMMSESKEMAQLAVATYLVDKLALRAGGEKDEDLADT 239
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
VG CTL+ G+++ + N ++FDFLGKDSIQY+ +++ YK + +F GK + D+FD
Sbjct: 240 VGVCTLRAGHIKFMDDNVIEFDFLGKDSIQYLQQHKIDEVAYKCLQRFVQGKGPDVDIFD 299
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
+D K+NAHL+ LMPGLT KVFRTYNASITLD +L + K Y ANKEVA
Sbjct: 300 HVDPQKVNAHLQTLMPGLTIKVFRTYNASITLDRLLKDTKKNDTTLQKKATYDAANKEVA 359
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
I+CNHQ+ VSK H AQM +L EK +DL + +++ K +D K ++
Sbjct: 360 ILCNHQKGVSKAHDAQMEKLAEKKKDLAKQVAEMK--------------KKTDDKNQK-- 403
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
+K+A + K+ M KE+LKTV+LGTSKINYLDPRIT++WCKRHEVP
Sbjct: 404 ------KKLAALKERQSKLAIQMNMKEELKTVSLGTSKINYLDPRITLSWCKRHEVPPNV 457
Query: 925 IFNKSLLAKFAWAMDVDPEFRF 946
+F K+L+ KF WAMD + EF F
Sbjct: 458 VFTKALIDKFHWAMDCEMEFSF 479
>gi|348519252|ref|XP_003447145.1| PREDICTED: DNA topoisomerase 1-like [Oreochromis niloticus]
Length = 713
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/567 (49%), Positives = 357/567 (62%), Gaps = 37/567 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G FPP Y LP V Y GK V L+ EEVA FA MLD +Y K FR
Sbjct: 162 KWKFLEHKGPYFPPEYQPLPDNVHFYYNGKTVKLSLAAEEVAVFFAQMLDHEYTTKVVFR 221
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
ENF+ DWRK + +IQ+L+ CDF I+ H+ + E +K MS EEK+ALKE K
Sbjct: 222 ENFFKDWRKEMTHEERSLIQDLDKCDFGEIHAMHKAKTEARKNMSKEEKQALKEANQKIV 281
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++GNF++EPPGLFRGRGEHPK G LKKRIQP D+ IN KD IP
Sbjct: 282 DEYGYCLLDHHKERIGNFKIEPPGLFRGRGEHPKQGMLKKRIQPEDVIINCSKDSRIP-V 340
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN+VTWL W + I KY+ L A+S LKG+ D EKYE ARKLK
Sbjct: 341 PPAGHHWKEVRHDNSVTWLVSWTENIQGSN-KYIMLNANSKLKGEKDWEKYEVARKLKSR 399
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV- 695
+ IR Y +D S+ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 400 VDDIRYQYLQDLKSKQMVTRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIT 459
Query: 696 --------ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
EC+ ++FDFLGKD I+Y N V V V+K + F K+ D+LFD+L+
Sbjct: 460 LHEQLDGNECV----VEFDFLGKDCIRYYNKVPVIKKVFKNLKLFLENKQPGDELFDRLN 515
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAII 806
T LN HL LMPGLTAKVFRTYNASITL L + T D VA K+ Y RAN+ VAI+
Sbjct: 516 TNVLNKHLSSLMPGLTAKVFRTYNASITLQQQLKELTNKSDNVAEKLLSYNRANRAVAIL 575
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP 866
CNHQR KT M+ L KI+ K L + +L +AKK + K K N P
Sbjct: 576 CNHQRAPPKTFEQSMANLQAKIDARKEQLALAKTELKQAKK---------EAKTKGNSDP 626
Query: 867 E---ALERKMA---QTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
+ +ERK A + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK EV
Sbjct: 627 KLQALVERKKAAVKRCEEQLLKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKNMEV 686
Query: 921 PIEKIFNKSLLAKFAWAMDV-DPEFRF 946
PIEKI+NK+ KFAWA+D+ + +F F
Sbjct: 687 PIEKIYNKTQREKFAWAIDMTEADFEF 713
>gi|190407336|gb|EDV10603.1| DNA topoisomerase I [Saccharomyces cerevisiae RM11-1a]
gi|259149480|emb|CAY86284.1| Top1p [Saccharomyces cerevisiae EC1118]
Length = 769
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/632 (44%), Positives = 393/632 (62%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 199
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 200 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 259
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 260 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 319
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 320 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 377
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 378 KARQLKSYIDAIRRDYTRNLKSKLMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 437
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 438 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 497
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 498 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 557
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVL---KDL---------RVD------- 841
HQRTV+K H+ + + +I++L + +L KDL +D
Sbjct: 558 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDE 617
Query: 842 -------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAQTNAKIEKMERDMKT- 889
+DR +K + ++++D ++ K L PE+ L+ + + + K ++ E+++KT
Sbjct: 618 ATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTG 677
Query: 890 ----------------------------------KEDLKTVALGTSKINYLDPRITVAWC 915
KE+ V+LGTSKINY+DPR++V +C
Sbjct: 678 EVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFC 737
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 738 KKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
>gi|349581160|dbj|GAA26318.1| K7_Top1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 769
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/632 (44%), Positives = 393/632 (62%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 199
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 200 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 259
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 260 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 319
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 320 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 377
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 378 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 437
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 438 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 497
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 498 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 557
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVL---KDL---------RVD------- 841
HQRTV+K H+ + + +I++L + +L KDL +D
Sbjct: 558 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDE 617
Query: 842 -------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAQTNAKIEKMERDMKT- 889
+DR +K + ++++D ++ K L PE+ L+ + + + K ++ E+++KT
Sbjct: 618 ATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTG 677
Query: 890 ----------------------------------KEDLKTVALGTSKINYLDPRITVAWC 915
KE+ V+LGTSKINY+DPR++V +C
Sbjct: 678 EVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFC 737
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 738 KKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
>gi|6324568|ref|NP_014637.1| DNA topoisomerase 1 [Saccharomyces cerevisiae S288c]
gi|135993|sp|P04786.2|TOP1_YEAST RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Maintenance of killer protein 1
gi|1419771|emb|CAA99005.1| TOP1 [Saccharomyces cerevisiae]
gi|151945624|gb|EDN63865.1| topoisomerase I [Saccharomyces cerevisiae YJM789]
gi|207341303|gb|EDZ69397.1| YOL006Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814884|tpg|DAA10777.1| TPA: DNA topoisomerase 1 [Saccharomyces cerevisiae S288c]
gi|365763239|gb|EHN04769.1| Top1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296327|gb|EIW07429.1| Top1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 769
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/632 (44%), Positives = 393/632 (62%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 199
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 200 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 259
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 260 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 319
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 320 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 377
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 378 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 437
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 438 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 497
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 498 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 557
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVL---KDL---------RVD------- 841
HQRTV+K H+ + + +I++L + +L KDL +D
Sbjct: 558 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDE 617
Query: 842 -------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAQTNAKIEKMERDMKT- 889
+DR +K + ++++D ++ K L PE+ L+ + + + K ++ E+++KT
Sbjct: 618 ATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTG 677
Query: 890 ----------------------------------KEDLKTVALGTSKINYLDPRITVAWC 915
KE+ V+LGTSKINY+DPR++V +C
Sbjct: 678 EVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFC 737
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 738 KKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
>gi|256273990|gb|EEU08906.1| Top1p [Saccharomyces cerevisiae JAY291]
Length = 745
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/632 (44%), Positives = 393/632 (62%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 116 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 175
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 176 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 235
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 236 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 295
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 296 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 353
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 354 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 413
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 414 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 473
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 474 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 533
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVL---KDL---------RVD------- 841
HQRTV+K H+ + + +I++L + +L KDL +D
Sbjct: 534 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDE 593
Query: 842 -------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAQTNAKIEKMERDMKT- 889
+DR +K + ++++D ++ K L PE+ L+ + + + K ++ E+++KT
Sbjct: 594 ATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTG 653
Query: 890 ----------------------------------KEDLKTVALGTSKINYLDPRITVAWC 915
KE+ V+LGTSKINY+DPR++V +C
Sbjct: 654 EVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFC 713
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 714 KKYDVPIEKIFTKTLREKFKWAIESVDENWRF 745
>gi|195045561|ref|XP_001991997.1| GH24453 [Drosophila grimshawi]
gi|193892838|gb|EDV91704.1| GH24453 [Drosophila grimshawi]
Length = 1063
Score = 507 bits (1306), Expect = e-140, Method: Compositional matrix adjust.
Identities = 273/583 (46%), Positives = 368/583 (63%), Gaps = 19/583 (3%)
Query: 375 KKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVN 432
K ++K+ K+ + D KWTTL H G +F PPY +P V+ Y GK +
Sbjct: 489 KHSRKIKKDEEEEVWRWWEEKRRDDGVKWTTLEHKGPVFAPPYERVPQNVRFFYDGKPLE 548
Query: 433 LTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDW 490
L+ E EE AT +A ML+ DY K F NF+ D+RK + + +I++ C+F+ ++ +
Sbjct: 549 LSEETEEAATFYAKMLNHDYCTKDVFNTNFFKDFRKTMTVKEKEIIKDFRKCNFQEMFQF 608
Query: 491 HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 550
Q + EK+K + EEK K E ++Y + ++DG KEK+GNFR+EPPGLFRGRGEHP
Sbjct: 609 FQAESEKRKAATKEEKLLKKNENEALVKEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHP 668
Query: 551 KMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKY 610
KMG +K+RI +D++IN GK +P+ P+ G WKEV+HDNTVTWLA W + + + KY
Sbjct: 669 KMGMIKRRIAAADVSINCGKQSKVPQPPMGG-RWKEVRHDNTVTWLASWTENVQG-QVKY 726
Query: 611 VFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLA 670
+ L SS LKG+ D KYE AR+L I IRA Y ++ S++ RQ AVA Y IDKLA
Sbjct: 727 IMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLA 786
Query: 671 LRAGNEKDDDEADTVGCCTLKVGNVEC-----IPPNKLKFDFLGKDSIQYVNTVEVELPV 725
LRAGNEKD+D+ADTVGCC+L+V +V+ N + FDF GKDSI+Y N VEVE V
Sbjct: 787 LRAGNEKDEDQADTVGCCSLRVEHVQLHKELNCKENVVVFDFPGKDSIRYYNEVEVEKRV 846
Query: 726 YKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT- 784
+K + F KK+ DDLFD+L+T LN HLKELM GLTAKVFRTYNAS TL L+ T
Sbjct: 847 FKNLELFMENKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLTD 906
Query: 785 GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR 844
G VA K+ Y RAN+ VAI+CNHQR+V K H M L EKI + + D +
Sbjct: 907 GSATVAEKLLAYNRANRAVAILCNHQRSVPKGHQKSMDNLKEKIRAKRDNIDDCEAEYHD 966
Query: 845 AKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKIN 904
KK K K K N +A +++ + +++K+E +++ KT+AL TSK+N
Sbjct: 967 LKKA----AKRGSVKEKVNADKKA--KQLERLKDQLKKLELQETDRDENKTIALSTSKLN 1020
Query: 905 YLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
YLDPRI+VAWCK++ VPIEKIFNK+ KF WA+ + D +RF
Sbjct: 1021 YLDPRISVAWCKKNGVPIEKIFNKTQRTKFLWAIHMADENYRF 1063
>gi|297707097|ref|XP_002830355.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1 [Pongo abelii]
Length = 768
Score = 507 bits (1306), Expect = e-140, Method: Compositional matrix adjust.
Identities = 273/557 (49%), Positives = 359/557 (64%), Gaps = 18/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS E+++ +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEKRQKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 397
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 398 PSRTIRWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 456
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 457 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 516
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 517 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 576
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 577 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 636
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 637 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 691
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 692 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 751
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 752 REKFAWAIDMADEDYEF 768
>gi|194215159|ref|XP_001496421.2| PREDICTED: DNA topoisomerase I, mitochondrial-like [Equus caballus]
Length = 655
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 271/557 (48%), Positives = 357/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV Y GK V L+ EEVAT + MLD +Y K F+
Sbjct: 106 KWKQLEHKGPYFAPSYEPLPDGVHFYYDGKPVKLSLAAEEVATFYGKMLDHEYTTKEVFQ 165
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWRK + + +I++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 166 NNFFSDWRKEMTAEERKIIKHLDKCDFTEIHRYFVDKTAARKALSREEKQKLKEEAEKLQ 225
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + +DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+RI P D+TIN +D IP+
Sbjct: 226 QEFGYCTLDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRILPEDVTINCSRDSKIPK- 284
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + I KYV L SS LKG+ D +KYE AR+LK
Sbjct: 285 PPAGHQWKEVRSDNTVTWLASWTENIQ-NSIKYVMLNPSSKLKGEKDWQKYEVARRLKGV 343
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ +RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 344 VDEIRSQYRADWKSREMKKRQCAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQ 403
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++ DFLGKDSI+Y N V VE PVYK + F K + DDLFD+L T L
Sbjct: 404 LYPEADGCQHVVELDFLGKDSIRYYNRVPVEKPVYKNLQLFMENKSRGDDLFDRLTTTSL 463
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNAS+TL L T + VA KI Y RAN+ VAI+CNHQ
Sbjct: 464 NKHLQDLMDGLTAKVFRTYNASVTLQEQLRALTRAEDSVAAKILSYNRANRAVAILCNHQ 523
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KIE K + + + +L +A+ G D R R+ E E
Sbjct: 524 RATPKTFEKSMQNLQLKIEAKKKQVAEAKAELKQARAGHKCRGDD----RSRSFL-EKRE 578
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ ++ KE+ K VALGTSK+NYLDPRI+VAWCKR VP+E+I+NK+
Sbjct: 579 RLLEKLEEQLMRLSTQATDKEESKQVALGTSKLNYLDPRISVAWCKRFGVPVERIYNKTQ 638
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+D+ E F F
Sbjct: 639 RERFAWALDMAGEDFEF 655
>gi|402224180|gb|EJU04243.1| topoisomerase I [Dacryopinax sp. DJM-731 SS1]
Length = 846
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 332/846 (39%), Positives = 462/846 (54%), Gaps = 97/846 (11%)
Query: 193 DDNDSEDDKPLSARLKGNSKNVNQGI-GASKADAAISEVNVKTDP----EDSDDEVPLSS 247
D +DSEDD+PL+ G++K+ + G ++ SE+ P D DD+ P++
Sbjct: 6 DSSDSEDDRPLATTANGHAKSNGSNVNGKRPLPSSSSELTDDDKPLVYSSDEDDDKPIAQ 65
Query: 248 RFPKSNAGTSGA-KPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSS--- 303
GA + ++ PLA + NG SR +++S + S
Sbjct: 66 MTKSIAVPMPGAVEKSGVEDDVPLA---KANGRASRGGRRQSYKEEDYGDEDEDDSDEPI 122
Query: 304 GASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPI--------------SQRMKNSA 349
+AKK + K+ K+V + A D+ IP+ +++ + S
Sbjct: 123 AKRAAKKRTSTGKGKQPPKKRVKKGPDADASSDEDIPLAKHKAAKSKAAPKPTEKKRKSE 182
Query: 350 PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYS--------------KSTKMLPG 395
P+ + A+ K S S K KT K + + K + L
Sbjct: 183 PATPSAQNGRAQVKKEESVSPVKPRGKTAKSEEADAEAQAKAEEEAEEEESYKYWEKLNA 242
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
GDG +KW+TL HNGV+FPPPY LP VKMLY GK V L E EEVA F ML+T +
Sbjct: 243 EGDGSQKWSTLEHNGVLFPPPYQPLPSHVKMLYDGKVVELPHESEEVAGFFGAMLETPHA 302
Query: 454 QKPKFRENFWNDWRKLLGK----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
Q +FR NF+ D++ +L K N + I++L+ CDF+P+Y+ + ++ KKK MS+ EKK
Sbjct: 303 QDNQFRNNFFEDFQAVLSKYPPRNGIKIKSLDACDFRPMYEHFEAERAKKKAMSTAEKKE 362
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K+ K+ EE Y++ ++DG KEKVGNFRVEPPGLFRGRGEHP+ G+LK R+ P D+ INI
Sbjct: 363 TKKVKDALEEPYLYCMLDGRKEKVGNFRVEPPGLFRGRGEHPRKGRLKLRLHPEDMIINI 422
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
G+ IP IPG+ WKEV HDNTVTWLA W + IN KYVFLAA SSLKGQSD K+
Sbjct: 423 GEGSKIPVPNIPGK-WKEVIHDNTVTWLANWKENINGNS-KYVFLAAGSSLKGQSDIAKF 480
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EKAR+LK ++ +R YT D S+ RQ A A Y ID+ ALRAGNEK D+EADTVGCC
Sbjct: 481 EKARELKKHVDRLRKDYTADLGSKVMAERQRATAIYFIDRYALRAGNEKGDEEADTVGCC 540
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+L+ +V P+KL DFLGKDSI+Y N ++VE ++K + F+ GK + DDLFD++ T
Sbjct: 541 SLRYEHVTMEKPDKLILDFLGKDSIRYYNELKVEPQIFKNVRIFKEGKSEGDDLFDRVTT 600
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIIC 807
A LN +L+ M GLTAKVFRTYNASIT +L K T + VA KI + RAN+E+ +
Sbjct: 601 ASLNKYLQSYMKGLTAKVFRTYNASITCQQLLEKLTDPNATVAEKILSFNRANRELRALK 660
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL-------RVDLDRAK-------------- 846
+R + Q +L +K ++L DL D R K
Sbjct: 661 YQRRKLRLALLTQEPQLKKKKKELLEEESDLDDEWIANHEDELRKKDIEKAEKKFEKEKE 720
Query: 847 ---------------KGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK--------- 882
+G+ + + + K+ + E K A+++ KIE+
Sbjct: 721 KAAADGEDEPKASVLEGRLETINEEYDRLKKERGTKTAELKTAKSSEKIEEAIEKLDERI 780
Query: 883 --MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV 940
M +E+ K V+L TSK NY+DPRI AW K+HEVPIEK+ KSL+ KF WA++V
Sbjct: 781 KNFRYQMTDREEGKEVSLTTSKTNYIDPRIIAAWAKKHEVPIEKVLPKSLITKFPWAVEV 840
Query: 941 DPEFRF 946
D ++ F
Sbjct: 841 DADYIF 846
>gi|2245428|gb|AAC39319.1| topoisomerase I [Emericella nidulans]
Length = 871
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 342/878 (38%), Positives = 465/878 (52%), Gaps = 138/878 (15%)
Query: 197 SEDDKPL---SARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPL-------- 245
S+DD PL + R G +V A V+++ P D++V +
Sbjct: 4 SDDDTPLVKMNGRSSGGQSDVKVNGAADTNGHVDPGVSIRFGPVQKDEDVEMNDANGASA 63
Query: 246 SSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVK---RPLQKASS 302
S R +S+A + + ++ ++ S E + VP+ R L KAS
Sbjct: 64 SKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKLPKASE 123
Query: 303 SGASSAKKPKVSDTSKEVKV----KQVTVKVEKKADDDDHIPISQRMKNSA--------- 349
+ SD E K+ K++ VK EK AD P +Q K++A
Sbjct: 124 TAIGEESD---SDVPIERKLAAEKKKIQVKGEKDAD-----PSAQATKSAASGKKQANGV 175
Query: 350 ----PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML--------PGSG 397
S K+++ KS S+ K N K + K P G
Sbjct: 176 KKEPASAKQNLKQVKAEPKSAQSTPAKKNAKATALKKEESEEAEEPEEEEYKWWEGPTKG 235
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
DG KWTTL HNGV+FPPPY LP VKM Y G V+L PE EEVA F ML+ T + +
Sbjct: 236 DGTIKWTTLEHNGVVFPPPYEPLPKHVKMKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTE 295
Query: 455 KPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L K N V I+ CD +PI+ ++ Q+++KK +
Sbjct: 296 NPTFQKNFFADFKEILKKTGGAKDQKGNKVDIKEFSKCDSQPIFQYYDAQRQEKKALPPA 355
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKK LK EK+ QE YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K R+QP I
Sbjct: 356 EKKRLKAEKDAQEAPYMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVKARVQPEQI 415
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +KGQSD
Sbjct: 416 TINIGKEARVPPPP-EGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDVKGQSD 473
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
+K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGNEK +DEA+T
Sbjct: 474 YKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGEDEAET 533
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLF 743
VGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F+ KK+ D++F
Sbjct: 534 VGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIF 593
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
D+L T+ LN HL + MPGLTAKVFRTYNAS T+ +L G+ A K+ Y AN++V
Sbjct: 594 DRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHATGNNAEKVKAYNDANRKV 653
Query: 804 AIICNHQRT---VSKTHSAQMS-----------RLTEKIEDLKGVLK--------DLRVD 841
AI+CNH+RT V++ +MS RL + + DL LK +L D
Sbjct: 654 AILCNHKRTVGAVTRDQMEKMSERIKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFELDED 713
Query: 842 LDR--------------AKKGKPPLMKD-----SDGKRK--------------------- 861
+D+ A+K K KD ++G+++
Sbjct: 714 IDKEWIKEHQAFLIEEQAQKIKKKFEKDNEKLLAEGEKEMKASELETRLEAVKELEKKFN 773
Query: 862 ------------RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPR 909
R+ E LE + + +IE ME + KED K VALGTSKINY+DPR
Sbjct: 774 KENKTGKVEAEGRSPTVEKLEASITKLQQRIENMELQAQDKEDNKEVALGTSKINYIDPR 833
Query: 910 ITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+TV + K+ +VPIEK F+KSL KF WA+ VD + F
Sbjct: 834 LTVVFSKKFKVPIEKFFSKSLREKFEWAIKSVDENWEF 871
>gi|312087220|ref|XP_003145386.1| DNA topoisomerase I [Loa loa]
gi|307759451|gb|EFO18685.1| DNA topoisomerase I [Loa loa]
Length = 701
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 306/725 (42%), Positives = 432/725 (59%), Gaps = 76/725 (10%)
Query: 240 DDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPV------ 293
DD++PLS + A+ I D+ PLA K++ +T + VP+
Sbjct: 35 DDDIPLSRK----------ARMIVDDDDIPLAKKLKTMKNTHSDD---DDDVPLSQKAKP 81
Query: 294 KRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVK 353
++ L + + + ASS++ K S + +K E ++DDD +P+S R
Sbjct: 82 QKGLSEEAVADASSSRVKKSPLLSSTPSSARKVIKAELESDDD--VPLSVR--------- 130
Query: 354 KSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIF 413
+++ K+N+ T K+I N ++ + K SG KW +L H G IF
Sbjct: 131 ---------AATLTKKRKKVNQ-TMKII-NWRWEEEKK---PSG---IKWYSLSHKGPIF 173
Query: 414 PPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL- 470
PPY LP V Y GK + LTP EEVA+ +A +L+ +Y K F +NF+ DWRK++
Sbjct: 174 APPYVPLPESVHFKYDGKVMKLTPLTEEVASFYAKILEHEYTTKETFNKNFFMDWRKVMT 233
Query: 471 -GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVK 529
+ I +L CDF+ ++ + + +E+++ +S E+K+ +KE K ++ + Y A +DG K
Sbjct: 234 PAEREKITDLTKCDFREMHAHYVQLREERRSLSKEDKQKIKEAKQEEAKMYGVAYIDGHK 293
Query: 530 EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKH 589
+K+GNFR+EPP LFRGRG HPKMG+LK+RI P D+ IN KD IP+ P G WKEV+H
Sbjct: 294 QKIGNFRIEPPDLFRGRGGHPKMGRLKRRINPEDVIINCSKDSEIPKPP-EGHRWKEVRH 352
Query: 590 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDF 649
DNTVTWL W D I KY+ L SS +KG+ D EK+E AR+LKD + +IR YTKD
Sbjct: 353 DNTVTWLCSWTDNI-LGSIKYIMLNPSSKIKGEKDYEKFETARRLKDVVENIRENYTKDL 411
Query: 650 VSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV---ECIPPNK--L 703
S++ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+L+ ++ E + N +
Sbjct: 412 KSKEMRVRQRAVALYFIDKLALRAGNEKDVDEAADTVGCCSLRCEHIQLHEKLDDNDYVV 471
Query: 704 KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLT 763
+FDFLGKDSI+Y N V VE V+K + F K NDDLFD+LDTA LN +L+ LMPGLT
Sbjct: 472 EFDFLGKDSIRYYNKVPVEKRVFKNLKLFMENKSGNDDLFDRLDTASLNKYLQSLMPGLT 531
Query: 764 AKVFRTYNASITLDGMLNKGTGDGDVAVKIDV-YQRANKEVAIICNHQRTVSKTHSAQMS 822
AKVFRTYNASITL L K T D ++ + Y RAN++VAI+CNHQR V K+H M
Sbjct: 532 AKVFRTYNASITLQQQLEKLTKDDSTVPELLLCYNRANRQVAILCNHQRAVPKSHEKSME 591
Query: 823 RLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
L KI + KK + K+ K + ++A + +++ + ++ K
Sbjct: 592 NLKVKI---------------KTKKAELKEAKEELEKARGDVAKQRASKRVDRIKEQLRK 636
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-D 941
++ K++ K +AL TSK+NYLDPRI+VAWCK++EVPIEKIFNK+ KF WA+D+ D
Sbjct: 637 LKIQRTDKDENKQIALSTSKLNYLDPRISVAWCKKYEVPIEKIFNKTQREKFRWAIDMAD 696
Query: 942 PEFRF 946
++ F
Sbjct: 697 EDYVF 701
>gi|198470017|ref|XP_002134477.1| GA24044 [Drosophila pseudoobscura pseudoobscura]
gi|198147142|gb|EDY73104.1| GA24044 [Drosophila pseudoobscura pseudoobscura]
Length = 1054
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/556 (48%), Positives = 360/556 (64%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F PPY +P V+ Y G+ ++L+ E EE AT +A ML+ DY K F
Sbjct: 507 KWSTLEHKGPVFAPPYERVPRNVRFFYDGRPLDLSEETEEAATFYAKMLNHDYCTKDIFN 566
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+KQ + EEK A K E
Sbjct: 567 NNFFKDFRKSMTSKEKEIIKDFRKCNFQEMHEYFQAESEKRKQATKEEKLAKKNENEALI 626
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RI SD++IN GK+ +P
Sbjct: 627 KEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIGASDVSINCGKESKVPP- 685
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 686 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKS 744
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 745 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 804
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 805 HKELNDKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 864
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 865 EHLKELMDGLTAKVFRTYNASKTLQNQLDLLTDPSATVPEKLLTYNRANRAVAILCNHQR 924
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K H M L EKI + + D + KK G K + + +
Sbjct: 925 SVPKGHQKSMENLKEKIRAKRDAIDDCESEYHDLKKAA------KRGSVKEKVNADKKGK 978
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK++ VPIEKIFNK+
Sbjct: 979 QLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKNGVPIEKIFNKTQR 1038
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 1039 TKFLWAVHMADENYRF 1054
>gi|195163872|ref|XP_002022773.1| GL14571 [Drosophila persimilis]
gi|194104796|gb|EDW26839.1| GL14571 [Drosophila persimilis]
Length = 1042
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/556 (48%), Positives = 360/556 (64%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F PPY +P V+ Y G+ ++L+ E EE AT +A ML+ DY K F
Sbjct: 495 KWSTLEHKGPVFAPPYERVPRNVRFFYDGRPLDLSEETEEAATFYAKMLNHDYCTKDIFN 554
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+KQ + EEK A K E
Sbjct: 555 NNFFKDFRKSMTSKEKEIIKDFRKCNFQEMHEYFQAESEKRKQATKEEKLAKKNENEALI 614
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RI SD++IN GK+ +P
Sbjct: 615 KEYGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIGASDVSINCGKESKVPP- 673
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 674 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKS 732
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 733 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 792
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 793 HKELNDKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 852
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 853 EHLKELMDGLTAKVFRTYNASKTLQNQLDLLTDPSATVPEKLLTYNRANRAVAILCNHQR 912
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K H M L EKI + + D + KK G K + + +
Sbjct: 913 SVPKGHQKSMENLKEKIRAKRDAIDDCESEYHDLKKAA------KRGSVKEKVNADKKGK 966
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK++ VPIEKIFNK+
Sbjct: 967 QLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKNGVPIEKIFNKTQR 1026
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 1027 TKFLWAVHMADENYRF 1042
>gi|173004|gb|AAA35162.1| topoisomerase I [Saccharomyces cerevisiae]
Length = 769
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 282/632 (44%), Positives = 392/632 (62%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 199
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 200 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 259
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG +E+VGNF+VEPP LF GRG HPK GKLK+R+ P DI +N+
Sbjct: 260 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFXGRGAHPKTGKLKRRVNPEDIVLNLS 319
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 320 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 377
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 378 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 437
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 438 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 497
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 498 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 557
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVL---KDL---------RVD------- 841
HQRTV+K H+ + + +I++L + +L KDL +D
Sbjct: 558 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDE 617
Query: 842 -------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAQTNAKIEKMERDMKT- 889
+DR +K + ++++D ++ K L PE+ L+ + + + K ++ E+++KT
Sbjct: 618 ATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTG 677
Query: 890 ----------------------------------KEDLKTVALGTSKINYLDPRITVAWC 915
KE+ V+LGTSKINY+DPR++V +C
Sbjct: 678 EVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFC 737
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 738 KKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
>gi|24642136|ref|NP_511161.2| topoisomerase 1, isoform A [Drosophila melanogaster]
gi|62473712|ref|NP_001014742.1| topoisomerase 1, isoform C [Drosophila melanogaster]
gi|7293054|gb|AAF48440.1| topoisomerase 1, isoform A [Drosophila melanogaster]
gi|61677900|gb|AAX52496.1| topoisomerase 1, isoform C [Drosophila melanogaster]
gi|71834182|gb|AAZ41763.1| RE58921p [Drosophila melanogaster]
Length = 974
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 271/558 (48%), Positives = 357/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 441 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 500
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S EEK K E
Sbjct: 501 NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 560
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD +P
Sbjct: 561 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVP-S 619
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 620 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 678
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 679 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 738
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 739 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 798
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 799 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 858
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + ++ + KKGK L
Sbjct: 859 SVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK------------------QL 900
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct: 901 ERLRDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 956
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 957 QRTKFLWAVHMADENYRF 974
>gi|386764449|ref|NP_001245679.1| topoisomerase 1, isoform D [Drosophila melanogaster]
gi|383293405|gb|AFH07393.1| topoisomerase 1, isoform D [Drosophila melanogaster]
Length = 970
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 271/558 (48%), Positives = 357/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 437 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 496
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S EEK K E
Sbjct: 497 NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 556
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD +P
Sbjct: 557 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVP-S 615
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 616 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 674
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 675 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 734
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 735 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 794
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 795 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 854
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + ++ + KKGK L
Sbjct: 855 SVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK------------------QL 896
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct: 897 ERLRDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 952
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 953 QRTKFLWAVHMADENYRF 970
>gi|267147|sp|P30189.1|TOP1_DROME RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|158643|gb|AAA28951.1| topoisomerase I [Drosophila melanogaster]
gi|1772834|gb|AAC24158.1| DNA topoisomerase I [Drosophila melanogaster]
Length = 972
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 271/558 (48%), Positives = 357/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 439 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 498
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S EEK K E
Sbjct: 499 NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 558
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD +P
Sbjct: 559 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVP-S 617
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 618 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 676
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 677 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 736
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 737 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 796
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 797 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 856
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + ++ + KKGK L
Sbjct: 857 SVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK------------------QL 898
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct: 899 ERLRDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 954
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 955 QRTKFLWAVHMADENYRF 972
>gi|254570697|ref|XP_002492458.1| Topoisomerase I [Komagataella pastoris GS115]
gi|238032256|emb|CAY70271.1| Topoisomerase I [Komagataella pastoris GS115]
Length = 763
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 275/618 (44%), Positives = 383/618 (61%), Gaps = 82/618 (13%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L HNGV+FPP + LP VK+ Y K V+L + EEVA F ML+T++ Q P F+
Sbjct: 140 KWHSLKHNGVLFPPEHVPLPSHVKLYYDKKPVDLPIQAEEVACFFGAMLNTEHAQNPAFQ 199
Query: 460 ENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
NF++D++K++ G N I++ + CDF I+D ++ QK KK +++ +K+ +K EK+K
Sbjct: 200 NNFFSDFKKIVLEHGGANVEIESFDKCDFSKIFDHYETQKSLKKSLTAAQKREIKSEKDK 259
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
EEKY + +++G +E+VGNFR+EPPGLFRGRG HPK G++KKRI P D+++N+ +D PIP
Sbjct: 260 FEEKYKYCLLNGRRERVGNFRIEPPGLFRGRGSHPKTGRVKKRIYPEDVSLNLSEDAPIP 319
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
P G WKE+KHDNTV WLA W + + KYV AA SSLKG+SD +K+EKAR+LK
Sbjct: 320 PPP-EGHQWKEIKHDNTVAWLATWRENVT-NTVKYVLFAADSSLKGRSDFKKFEKARELK 377
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
YIH IR Y K+F S+ RQ+AVATYLID ALRAG EK +DEADTVGCC+L+ +V
Sbjct: 378 KYIHRIRKDYKKNFSSKVMLERQMAVATYLIDVFALRAGGEKAEDEADTVGCCSLRYEHV 437
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAH 754
PPN + FDFLGKDSI+Y V V V+K + F+ KQ DDLFD+L LN H
Sbjct: 438 TLKPPNTVVFDFLGKDSIRYYQEVNVHEKVFKNLRLFKKSPKQPGDDLFDRLTPNILNKH 497
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
L+ +PGL+AKVFRTYNAS T+ L+ +G V K+ Y AN+EVAI+CNHQRT
Sbjct: 498 LQNYLPGLSAKVFRTYNASKTMQDQLDLIPNEGSVGEKVVKYNAANREVAILCNHQRTKP 557
Query: 815 KTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRA-KKGKPPLMKDSDG------------ 858
K+H + R+++ I +L K LK + ++LD++ KK KP ++ D
Sbjct: 558 KSHDMGVQRISDNIRELFWQKLRLKRMILELDKSLKKTKPYYFEELDDLSVEEEQAIQDR 617
Query: 859 -----------KRKRN----------LAPEA-LERKMAQTN------------------- 877
K R+ L PEA LE K+ + +
Sbjct: 618 VIAKEREKATKKFTRDNEKLKTEDSPLLPEAMLEEKLKKIDELAAEYKKELKTRKPEIKS 677
Query: 878 ---------AKIEKMERDMKT-------KEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+++EK+E+ ++ KED VALGTSK+NY+DPR+T + K+++VP
Sbjct: 678 VTVTVEKLESQVEKLEQRIRNATLLLQDKEDNSQVALGTSKLNYIDPRLTAMFSKKYDVP 737
Query: 922 IEKIFNKSLLAKFAWAMD 939
IEK+F+K+L KFAWA++
Sbjct: 738 IEKLFSKTLREKFAWAIE 755
>gi|339254408|ref|XP_003372427.1| DNA topoisomerase 1 [Trichinella spiralis]
gi|316967142|gb|EFV51618.1| DNA topoisomerase 1 [Trichinella spiralis]
Length = 560
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 274/561 (48%), Positives = 375/561 (66%), Gaps = 19/561 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW L H G +F PPY LP V Y GK + L+ EEVAT ++ MLD +Y K
Sbjct: 7 DDSVKWKFLEHKGPVFAPPYEPLPSSVNFYYDGKPMKLSEGAEEVATFYSKMLDHEYTTK 66
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F NF++DWRK++ + +I +L C+F+ + ++ ++ E++K +S +EKK LK+E+
Sbjct: 67 DVFNTNFFHDWRKMMNPKEREIITDLSRCNFREMNEYFTKKSEERKALSKDEKKKLKDEQ 126
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
Q Y +A+VDG KEK+GN+++EPPGLFRGRG HPKMG+LK+RIQP D+ IN KD
Sbjct: 127 EAQRLIYGYAVVDGHKEKIGNYKIEPPGLFRGRGTHPKMGRLKRRIQPEDVIINCSKDAK 186
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+PE P PG SWKEV++DNTVTWLA W + I KYV L SS +KG+ D EKYE ARK
Sbjct: 187 VPEPP-PGHSWKEVRYDNTVTWLASWTENIMGSN-KYVMLNPSSKIKGEKDWEKYETARK 244
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LKD + IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK+D+E ADTVGCC+L+
Sbjct: 245 LKDVVEKIRSEYRNDWKSKEMKVRQRAVALYFIDKLALRAGNEKEDNETADTVGCCSLRC 304
Query: 693 GNVECI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+++ N ++FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L+
Sbjct: 305 EHIKLHKELDGQQNVVEFDFLGKDSIRYYNRVPVESRVFKNLRIFMEHKSPDDDLFDRLN 364
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAII 806
TA LN HL+ LMPGLTAKVFRTYNASITL L T GD + A ++ Y RAN++VAI+
Sbjct: 365 TATLNKHLQNLMPGLTAKVFRTYNASITLQQQLELLTKGDTNTAERLLAYNRANRQVAIL 424
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP 866
CNHQR+V KTH QM + +KIE+ + +K+++ + AK ++ G K
Sbjct: 425 CNHQRSVPKTHGKQMENIQKKIEEKEKQIKEMKKMVKSAKAE-----HNASGTAKTKKVL 479
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E ++ + ++ ++ K++ KE+ K +AL TSK+NYLDPRI+VAWCK+ +VPI+KI+
Sbjct: 480 EQKKKNLHRSEEQLLKLKVRATDKEENKEIALSTSKLNYLDPRISVAWCKKWDVPIDKIY 539
Query: 927 NKSLLAKFAWAMDV-DPEFRF 946
N++ KF WA+D+ PEF F
Sbjct: 540 NRTQREKFRWAIDMAGPEFVF 560
>gi|225562965|gb|EEH11244.1| topoisomerase I [Ajellomyces capsulatus G186AR]
Length = 909
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/642 (44%), Positives = 385/642 (59%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGVIFPPPY LP VKM Y G + L PE EEVA F ML++
Sbjct: 270 PAKGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGIPITLAPEAEEVAGFFGSMLNST 329
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ D+ + G I++ + CDFKPI+++++ + +KK
Sbjct: 330 HNVENPTFQKNFFTDFTAYIKNSGGAKDPNGNPVAIKSFDKCDFKPIFEYYEAARLEKKS 389
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ S EKK LK EK++ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+
Sbjct: 390 LPSAEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGKVKTRVM 449
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P PG WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 450 PEQITINIGKEAKVP-VPPPGHKWKEVKHDQEGTWLAMWQENIN-GNYKYVMLAANSDIK 507
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
G SD +K+EKAR+LK +I IR Y K + RQ A A YLID+ ALRAGNEK +D
Sbjct: 508 GLSDYKKFEKARELKKHIDRIRKDYKKGLKHELMSERQKATAVYLIDQFALRAGNEKGED 567
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI++ + VEV+ V+K + F+ K++
Sbjct: 568 EADTVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKREG 627
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L G +A KI Y A
Sbjct: 628 DEIFDRLTTSALNKHLSNYMQGLTAKVFRTYNASYTMATLLKDLKSTGTIAEKIKDYNDA 687
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVLKDLRVDLD---RAKKG----- 848
N++VAI+CNH+RTV+ +H++QM +L ++I+ L+ +K + +DLD + KKG
Sbjct: 688 NRKVAILCNHKRTVTASHASQMEKLGDRIKGLRYQEWRVKQMMLDLDPKIKKKKGSAFFE 747
Query: 849 -------------------------KPPLMKD-----SDGKR--------KRNLAPEALE 870
K KD ++G+R +R A + LE
Sbjct: 748 LDESLDHEWIKEHQAYLVEEQRQKIKKKFEKDNQKRVAEGEREMKAKELEERLEAAKELE 807
Query: 871 RKMAQTN-----------AKIEKMERDM--------------KTKEDLKTVALGTSKINY 905
K + N IEK+E + + KE+ K VALGTSKINY
Sbjct: 808 AKFKRENKTKKVEAEGKGITIEKLENQLLKLSQRIENMSLQAEDKENNKEVALGTSKINY 867
Query: 906 LDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+DPR+TV + K+ VPIEK F+K+L KF WA+ VD ++ F
Sbjct: 868 IDPRLTVVFSKKFNVPIEKFFSKTLREKFDWAIKSVDEDWEF 909
>gi|240279786|gb|EER43291.1| topoisomerase I [Ajellomyces capsulatus H143]
gi|325092918|gb|EGC46228.1| topoisomerase I [Ajellomyces capsulatus H88]
Length = 909
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/642 (44%), Positives = 385/642 (59%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGVIFPPPY LP VKM Y G + L PE EEVA F ML++
Sbjct: 270 PAKGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGIPITLAPEAEEVAGFFGSMLNST 329
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ D+ + G I++ + CDFKPI+++++ + +KK
Sbjct: 330 HNVENPTFQKNFFTDFTAYIKNSGGAKDPNGNPVAIKSFDKCDFKPIFEYYEAARLEKKS 389
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ S EKK LK EK++ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+
Sbjct: 390 LPSAEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGKVKTRVM 449
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P PG WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 450 PEQITINIGKEAKVP-VPPPGHKWKEVKHDQEGTWLAMWQENIN-GNYKYVMLAANSDIK 507
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
G SD +K+EKAR+LK +I IR Y K + RQ A A YLID+ ALRAGNEK +D
Sbjct: 508 GLSDYKKFEKARELKKHIDRIRKDYKKGLKHELMSERQKATAVYLIDQFALRAGNEKGED 567
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI++ + VEV+ V+K + F+ K++
Sbjct: 568 EADTVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKREG 627
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L G +A KI Y A
Sbjct: 628 DEIFDRLTTSALNKHLSNYMQGLTAKVFRTYNASYTMATLLKDLKSTGTIAEKIKDYNDA 687
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVLKDLRVDLD---RAKKG----- 848
N++VAI+CNH+RTV+ +H++QM +L ++I+ L+ +K + +DLD + KKG
Sbjct: 688 NRKVAILCNHKRTVTASHASQMEKLGDRIKGLRYQEWRVKQMMLDLDPKIKKKKGSAFFE 747
Query: 849 -------------------------KPPLMKD-----SDGKR--------KRNLAPEALE 870
K KD ++G+R +R A + LE
Sbjct: 748 LDESLDHEWIKEHQAYLVEEQRQKIKKKFEKDNQKRVAEGEREMKAKELEERLEAAKELE 807
Query: 871 RKMAQTN-----------AKIEKMERDM--------------KTKEDLKTVALGTSKINY 905
K + N IEK+E + + KE+ K VALGTSKINY
Sbjct: 808 AKFKRENKTKKVEAEGKGITIEKLENQLLKLSQRIENMSLQAEDKENNKEVALGTSKINY 867
Query: 906 LDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+DPR+TV + K+ VPIEK F+K+L KF WA+ VD ++ F
Sbjct: 868 IDPRLTVVFSKKFNVPIEKFFSKTLREKFDWAIKSVDEDWEF 909
>gi|320168823|gb|EFW45722.1| DNA topoisomerase I [Capsaspora owczarzaki ATCC 30864]
Length = 821
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/563 (47%), Positives = 372/563 (66%), Gaps = 31/563 (5%)
Query: 390 TKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVM 447
T ML GDG ++W TL HNGV+ P Y LP Y G++V L+ EE+ +A M
Sbjct: 284 TAML---GDGSERWQTLSHNGVMLAPEYVALPPQAFFKYNGQKVALSLPTEELIGFYAAM 340
Query: 448 LDTDYMQKPKFRENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
L +DY+ K KF ENF + RK++ K +I +L CDF I D+ ++Q+E +K + EE
Sbjct: 341 LKSDYVTKDKFNENFMVELRKVMTKEEKALITDLAKCDFTVIQDYFEQQREIRKNRTKEE 400
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
K A+K + + ++Y + ++DG KE++ NFRVEPPGLFRGRG+HPKMG LK+R+ P DIT
Sbjct: 401 KAAIKAQNEELVKQYGFCLMDGRKERIANFRVEPPGLFRGRGDHPKMGMLKRRVVPEDIT 460
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
IN KD P P G WKEV + TVTWLA W D I+ KYV L ++S LKG +D
Sbjct: 461 INCSKD-STPPAPPAGHKWKEVICNKTVTWLASWVDGISGHA-KYVMLNSASKLKGLNDM 518
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADT 684
+KYEKAR LK +I IR +YT+D S++ RQ A A + ID+LALR GNEKD +++ADT
Sbjct: 519 KKYEKARDLKKHIKHIRRSYTEDMSSKEMAIRQRATALHFIDRLALRCGNEKDPEEQADT 578
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
VGCC+L+ +++ P+ + FDFLGKDSI+Y N+V+VE VYK + FQ K++ D LFD
Sbjct: 579 VGCCSLRFEHIKLEEPSTVHFDFLGKDSIRYQNSVDVEERVYKNLIIFQKNKEEGDLLFD 638
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
+L T LN +L + MPGLTAKVFRTYNASITL L DG + K+ Y RAN+ VA
Sbjct: 639 RLTTTALNKYLTDFMPGLTAKVFRTYNASITLQEQLKLTPTDGSIHEKVLAYNRANRAVA 698
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
++CNHQR+V K QM ++ EKIE +K +L+ A+K + K++ ++K+
Sbjct: 699 VLCNHQRSVPKKFGEQMDKMDEKIEAVKK-------ELNEARK----VYKETKDEKKK-- 745
Query: 865 APEALERKMAQTNAK-IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
A+ER A+ ++ I+K ++D + KT+AL T+K+NYLDPRITVAWCKR++VP+E
Sbjct: 746 --AAVERLKARVDSLVIQKTDKD-----ENKTIALSTAKLNYLDPRITVAWCKRYDVPVE 798
Query: 924 KIFNKSLLAKFAWAMDVDPEFRF 946
KI+NK+ +KFAW+M V +F F
Sbjct: 799 KIYNKTQRSKFAWSMGVPTDFTF 821
>gi|432859495|ref|XP_004069135.1| PREDICTED: DNA topoisomerase 1-like [Oryzias latipes]
Length = 750
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 364/557 (65%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+PE EEVAT FA MLD +Y K FR
Sbjct: 201 KWKFLEHKGPVFAPPYEPLPSRVKFYYDGKPMRLSPEAEEVATFFAKMLDHEYTTKDIFR 260
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L+ C+F + ++ + Q E +K MS EEK+ +KEE +
Sbjct: 261 KNFFKDWRKEMTAEEKATITDLKKCNFTEMSEYFKAQSEARKAMSKEEKQKIKEENERLL 320
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+KY + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD PE
Sbjct: 321 QKYGYCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKCPEP 380
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 381 P-PGTKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 438
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 439 VDRIRAQYREDWKSKEMRVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 498
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P N+ ++FDFLGKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 499 LYPENEGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKEPDDDLFDRLNTSIL 558
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 559 NKHLQELMDGLTAKVFRTYNASITLQQQLKELTTADENIPAKILSYNRANRAVAILCNHQ 618
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D + +L A K + KD K+ A E+
Sbjct: 619 RAPPKTFEKSMQNLQAKIDAKKDQLSDAKRELKSA-KADAKVRKDEKTKK----AVESKR 673
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +P+EKI+NK+
Sbjct: 674 KAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPVEKIYNKTQ 733
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 734 REKFAWAIDMADEDYEF 750
>gi|427788599|gb|JAA59751.1| Putative dna topoisomerase i [Rhipicephalus pulchellus]
Length = 967
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/561 (47%), Positives = 372/561 (66%), Gaps = 20/561 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG KKW TL H G +F P Y LP V+ Y G V L+PE EEVA + MLD DY K
Sbjct: 415 DG-KKWHTLEHKGPVFAPEYEPLPDNVRFYYDGVPVKLSPEAEEVAGFYGRMLDHDYTSK 473
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F +NF++DWRK + + +I +L+ C+FK I +++ + E++K M+ EEK+A+K +
Sbjct: 474 DVFNKNFFHDWRKCMTSKEAELITDLKKCNFKEIDAYYKMKSEERKAMTKEEKQAIKLQN 533
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K E+Y + I+DG K+K+GNF++EPPGLFRGRGEHPKMG LK+RI P D+ INIGK+
Sbjct: 534 EKLVEEYGFCIIDGHKQKIGNFKIEPPGLFRGRGEHPKMGMLKRRIMPEDVIINIGKEAK 593
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+P+ P PG WKEV+HD+ V+WL+ W + I + KY+ L SS LKG+ D +KYE ARK
Sbjct: 594 VPDPP-PGHKWKEVRHDDNVSWLSSWTENI-LGQTKYIMLNPSSKLKGEKDMQKYEMARK 651
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LK + IR Y D+ S++ RQ +VA Y IDKLALRAGNEK++ E ADTVGCC+L+V
Sbjct: 652 LKSCVDKIRQNYMNDWKSKEMRIRQRSVALYFIDKLALRAGNEKEEGETADTVGCCSLRV 711
Query: 693 GNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
++ ++FDFLGKDSI+YVN V VE V+K + F KK DDLFD+L+
Sbjct: 712 EHITLHDEKDGKEFVVEFDFLGKDSIRYVNAVPVEKRVFKNLKLFMENKKPQDDLFDRLN 771
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAII 806
T+ LN HL ELM GLTAKVFRTYNAS TL L T D + K+ Y RAN+ VAI+
Sbjct: 772 TSILNKHLNELMEGLTAKVFRTYNASKTLQEQLELLTEADMSLPEKMLAYNRANRAVAIL 831
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP 866
CNHQR V KT QM L +K+E+ + ++ ++++ + K +S ++ + L
Sbjct: 832 CNHQRAVPKTFGKQMENLQKKMEEKEEQIRQCKMEVKQLKSD----YHNSRSEKDKQLL- 886
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E ++++ Q +++K+E KE+ K +ALGTSK+NYLDPRI+VAWCK+ VPI+KI+
Sbjct: 887 ERKKKRLQQLEDQMKKLEVQAMDKEENKQIALGTSKLNYLDPRISVAWCKKWNVPIDKIY 946
Query: 927 NKSLLAKFAWAMDV-DPEFRF 946
NK+ KF WA+++ P+++F
Sbjct: 947 NKTQRDKFRWAIEMAGPDYKF 967
>gi|157167753|ref|XP_001655613.1| DNA topoisomerase type I [Aedes aegypti]
gi|108882028|gb|EAT46253.1| AAEL002551-PA [Aedes aegypti]
Length = 966
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 272/553 (49%), Positives = 360/553 (65%), Gaps = 24/553 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL H G +F PPY LP VK Y GK + L+ + EE+A +A ML+ +Y K F
Sbjct: 423 KWNTLEHKGPVFAPPYEPLPDNVKFEYDGKVIKLSQDAEEIAGFYARMLEHEYTSKDAFN 482
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + I++L+ C+F+ ++ E E + + E+K ALKE+
Sbjct: 483 DNFFKDWRKSMTSSEREKIKDLKKCNFRSMHKHFAEISEANRNRTKEQKLALKEQNEALM 542
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y +DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+R+ P D+ IN GK+ P+
Sbjct: 543 KEYGTCSIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMVKRRVMPEDVIINCGKESVWPKA 602
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN+V+WLA W + + + KYV L SS LKG+ D +KYE AR+L +
Sbjct: 603 P-EGHRWKEVRHDNSVSWLASWTENVQG-QVKYVMLNPSSKLKGEKDWQKYETARRLLKH 660
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 661 IDKIRDTYRDEWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIDL 720
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDFLGKDSI+Y N VEVE V+K + F+ KK DDLFD+L+T+ LN
Sbjct: 721 HKELNGKENVVVFDFLGKDSIRYYNEVEVEKRVFKNLELFKENKKPGDDLFDRLNTSVLN 780
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQ 810
HL+ELM GLTAKVFRT+NAS TL L + T D D+ V K+ Y RAN+ VAI+CNHQ
Sbjct: 781 EHLRELMEGLTAKVFRTFNASFTLQNQLRELT-DPDMTVPEKLLAYNRANRAVAILCNHQ 839
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R V KTH MS L EKI + ++ +L KK ++D K K+ + LE
Sbjct: 840 RAVPKTHEKSMSNLKEKIRAKQEAVETCERELKDLKKSN---VRDKVAKDKKQ---KQLE 893
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q N K+E E D K++ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKIFNK+
Sbjct: 894 RLREQLN-KLELQETD---KDENKTIALGTSKLNYLDPRISVAWCKKFGVPIEKIFNKTQ 949
Query: 931 LAKFAWAMDVDPE 943
KF WA+D+ E
Sbjct: 950 RDKFRWAIDMADE 962
>gi|291226061|ref|XP_002733015.1| PREDICTED: DNA topoisomerase I-like [Saccoglossus kowalevskii]
Length = 843
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 309/741 (41%), Positives = 425/741 (57%), Gaps = 82/741 (11%)
Query: 231 NVKTDPEDSDDEVPLSSRF-------PKSNAGTSGAKP---IDSDEKKPLASKVQQNGST 280
++K + EDSDD++PL+ R S++ + +P +DS++ +PL ++ Q+
Sbjct: 160 SIKKETEDSDDDIPLAQRTNVTVKVEEDSDSSPTKKRPHRDVDSEDDEPLFARAQK---- 215
Query: 281 SRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIP 340
AKK K S T+ VK+ ++K DD P
Sbjct: 216 ---------------------------AKKQKTSSTTS---VKKEHSDKKRKTGPDDDEP 245
Query: 341 ISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQ 400
+ + +KK V K K S K KK K + ++ + + G
Sbjct: 246 LKK--------IKKEVKPDKKTAKKTDGSPKKRVKKEKVEEEVWKWWEEKPLPEGV---- 293
Query: 401 KKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
KW +L H G +F P Y LP VK Y GK V L EEVA +A ML+ DY K F
Sbjct: 294 -KWMSLSHKGPVFAPEYERLPKSVKFYYDGKHVQLEEAAEEVAGFYAKMLEHDYTSKEIF 352
Query: 459 RENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
+NF+ DWRK + + +I +L CDF+ I +++ + E++K M+ EK+ +K++
Sbjct: 353 NKNFFRDWRKEMTHDEKALITDLSKCDFREIGAYYKMKSEERKNMTKAEKEEIKKQNQAL 412
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
++Y + I+DG K+K+GNFR+EPPGLFRGRG+HPK G LKKRIQP + IN KDV P+
Sbjct: 413 TDEYGFCIIDGHKQKIGNFRIEPPGLFRGRGDHPKQGMLKKRIQPETVIINCSKDVETPK 472
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
P G WK+V HDN VTWL W + I KY+ L A+S LKG+ D +KYE AR+LK
Sbjct: 473 PP-EGHRWKQVLHDNKVTWLCSWTENIQG-AIKYIMLNANSRLKGEKDWQKYEMARQLKT 530
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV 695
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 531 VVEKIRANYREDWRSKEMRIRQRAVAMYFIDKLALRAGNEKEEGETADTVGCCSLRVEHI 590
Query: 696 ECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
+ P K FDFLGKDSI+Y+N V VE VYK + F K DD+FD+L+T+
Sbjct: 591 KLYPELNGKEFVAEFDFLGKDSIRYLNQVPVEKRVYKNLQLFMDNKSPGDDVFDRLNTSI 650
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNH 809
LN HL+ELM GLTAKVFRT+NAS TL LN+ T D V KI Y RAN+ VA++CNH
Sbjct: 651 LNKHLQELMEGLTAKVFRTFNASKTLQDQLNELTNPDDSVTAKILSYNRANRAVAVLCNH 710
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEAL 869
QR + KT QM + EKI+ +KD + D KK K D + K AL
Sbjct: 711 QRAIPKTFDKQMLNMQEKIKKKNDTIKDAKKDY---KKLKGEYKSSRDDRLK-----SAL 762
Query: 870 ERK---MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
ERK + + ++ K+E KE+ K +ALGTSK+NYLDPRI+VAWCK+ EVP+EKI+
Sbjct: 763 ERKKKQLERLEEQLMKLEVQATDKEENKDIALGTSKLNYLDPRISVAWCKKWEVPLEKIY 822
Query: 927 NKSLLAKFAWAMDV-DPEFRF 946
N++ KF WA+D+ D + F
Sbjct: 823 NRTQREKFQWAIDMADETYEF 843
>gi|327281208|ref|XP_003225341.1| PREDICTED: DNA topoisomerase 1-like [Anolis carolinensis]
Length = 795
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 270/557 (48%), Positives = 357/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 246 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKDIFR 305
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + I +L CDF + + + Q E +KQM+ E+K+ +KEE +
Sbjct: 306 KNFFKDWRKEMTPEEKSTITSLSKCDFTQMSQYFKAQSEARKQMTKEDKQKIKEENEQLL 365
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 366 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKVPPP 425
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 426 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 483
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 484 VDRIRNQYREDWKSKEMRVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 543
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 544 LHPEMDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 603
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 604 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTTADDNIPAKILSYNRANRAVAILCNHQ 663
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D + +L A K + +D K+ +A++
Sbjct: 664 RAPPKTFEKSMMNLQSKIDAKKDQLADAKRELKSA-KADAKIRRDEKSKKTVESKKKAVQ 722
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 723 R----VEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKFGIPIEKIYNKTQ 778
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 779 REKFAWAIDMADDDFEF 795
>gi|254579975|ref|XP_002495973.1| ZYRO0C07458p [Zygosaccharomyces rouxii]
gi|238938864|emb|CAR27040.1| ZYRO0C07458p [Zygosaccharomyces rouxii]
Length = 843
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/633 (44%), Positives = 389/633 (61%), Gaps = 87/633 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGVIFPP Y LP +KM Y GK V+L P+ EEVA FA +L +D+ +
Sbjct: 214 DDTVKWTTLKHNGVIFPPTYEPLPSHIKMYYNGKPVDLPPQAEEVAGFFAALLQSDHAKN 273
Query: 456 PKFRENFWNDWRKLLGKNHV------IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
F+ NF+ND+ ++L +N I++ + CDF ++++ + QKE++KQ+S +EKK L
Sbjct: 274 TVFQSNFFNDFIEVLNENGGTKNGINIESFDKCDFTKMFEFFEMQKEQRKQLSPQEKKQL 333
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE + + +DG KE+VGNF++EPPGLFRGRG HPK GKLK+R+ P D+ +N+
Sbjct: 334 RMEREKFEEPFKYCELDGRKEQVGNFKIEPPGLFRGRGAHPKTGKLKRRVYPEDVVLNLD 393
Query: 570 KDVPIPECPIP-GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
KD IP P+P G+ W E++HDNTV WLA W + I+ FKYV AA+SSL GQSD +K+
Sbjct: 394 KDATIP--PLPEGQKWGEIRHDNTVQWLAMWRENIS-NSFKYVRFAANSSLNGQSDFKKF 450
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EK+R+LK +I +IR Y K+ ++ RQ AVA YLID ALRAG EK DDEADTVGCC
Sbjct: 451 EKSRQLKYHIDAIRKDYNKNLKNKVMLERQKAVAIYLIDVFALRAGGEKADDEADTVGCC 510
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLD 747
+L+ +V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 511 SLRYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDPQVFKNLTIFKRPPKQPGHQLFDRLD 570
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIIC 807
+ LN HL+ M GLTAKVFRTYNAS T+ L+ +G VA KI Y AN+ VAI+C
Sbjct: 571 PSVLNKHLQHYMQGLTAKVFRTYNASKTMQDQLDLIKNEGSVAEKILKYNAANRTVAILC 630
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDR-AKKGKPPLMKDSDGKRKR- 862
NHQR+V+KTH+ + + ++KIE+L K LK + LD+ +K +P ++ D RK
Sbjct: 631 NHQRSVAKTHAQSVQKASDKIEELEWQKVRLKRAILQLDKNERKKRPKFFEEIDDFRKEV 690
Query: 863 --NLAPEALER-------KMAQTNAK-----------------IEKME-------RDMKT 889
++ +ER K A+ N K +EK+E R++KT
Sbjct: 691 EASIHERIIEREIDKCHKKFARENDKKRFEKQELLDESVLKEWLEKVEELRQQYARELKT 750
Query: 890 -----------------------------------KEDLKTVALGTSKINYLDPRITVAW 914
KE+ V+LGTSKINY+DPR++V +
Sbjct: 751 SVTEVKSSSNSIEKLEKQIEKLDQRIETSSIQLRDKEENSQVSLGTSKINYIDPRLSVVF 810
Query: 915 CKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
CK++ VPIE+IF KSL KF WA++ D +RF
Sbjct: 811 CKKYGVPIERIFTKSLREKFKWAIESADENWRF 843
>gi|317418978|emb|CBN81016.1| DNA topoisomerase 1 [Dicentrarchus labrax]
Length = 755
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 266/557 (47%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY +P VK Y GK + L+P EEVAT FA MLD +Y K FR
Sbjct: 206 KWKFLEHKGPVFAPPYEPIPSNVKFFYDGKHMKLSPGAEEVATFFAKMLDHEYTTKDIFR 265
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DW+K + I +L+ CDF + ++ + Q E +K M+ +EK +K E +
Sbjct: 266 KNFFKDWKKEMTAEERAKITDLKKCDFTEMSEYFKAQSEARKAMTKDEKLKIKAENERLL 325
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD PE
Sbjct: 326 QEYGFCIMDNHRERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPQDIIINCSKDSKHPEP 385
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 386 P-PGTKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 443
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 444 VDRIRTQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 503
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P N+ ++FDFLGKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 504 LYPENEGLEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKEPDDDLFDRLNTSVL 563
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 564 NKHLQELMDGLTAKVFRTYNASITLQQQLKVLTSADENIPAKILSYNRANRAVAILCNHQ 623
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ + L D + +L ++ K + +D K+ A E +
Sbjct: 624 RAPPKTFEKSMQNLQAKIDAKRDQLSDAKREL-KSSKADAKVRRDEKSKK----AVETKK 678
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +P+EKI+NK+
Sbjct: 679 KAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPVEKIYNKTQ 738
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 739 REKFAWAIDMADDDFEF 755
>gi|325188249|emb|CCA22788.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 748
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 276/586 (47%), Positives = 371/586 (63%), Gaps = 42/586 (7%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVML-DTDYMQKPK--- 457
+W TL HNGV FPP Y PHG+ +LY+GK V LTP QEEV + +A + D + PK
Sbjct: 164 QWRTLEHNGVFFPPAYFPHGIPLLYQGKSVELTPAQEEVVSFYAAIPPDGPQLGNPKTRK 223
Query: 458 -FRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
F +NF+ D +KLLGKNH I+ + CDF I +E+KK S EEK+ KE K +
Sbjct: 224 IFNQNFFQDLQKLLGKNHTIKKFDLCDFSLIRQHLDVAREEKKNRSKEEKQLEKERKELE 283
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
+ +AIVDG EKVGN+R+EPPGLFRGRGEHPK G LK+R+ P ++T+N+G +P
Sbjct: 284 QFTNGFAIVDGHLEKVGNYRIEPPGLFRGRGEHPKTGTLKERVLPEEVTVNVGISDRVPI 343
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
C +PG +WKEV H +TV+WLA+WN+ + KYV+LAASSS KG+SD KYEKAR+LK
Sbjct: 344 CNMPGHAWKEVIHRDTVSWLAYWNENVMGG-IKYVWLAASSSFKGKSDMIKYEKARQLKK 402
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 696
+I IR YT ++D + +Q + A ++ID LALR GNEK +DEADTVGCC+L+V ++
Sbjct: 403 HIDRIRKDYTSGLKAKDRSTQQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMS 462
Query: 697 CIPPN-KLKFDFLGKDSIQYVNTV------EVELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
N +L FLGKDS+ Y NTV +V VY + F K +ND +FD+L T+
Sbjct: 463 FNDDNCELTLAFLGKDSMPYNNTVTLAQYGQVGKQVYSNLKLFCHKKSKNDQVFDELATS 522
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT---GDGDVAVKIDVYQRANKEVAII 806
LN HL LMPGLTAKVFRT+NAS+TL+ L G + VK+ Y AN+EVAI+
Sbjct: 523 DLNKHLSSLMPGLTAKVFRTFNASVTLEKELPYALDPDGKLETNVKVVAYNDANREVAIL 582
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR---VDLDRAKKGKPPL----------- 852
CNHQRTV K+ + ++T +++ LK L+DL+ V + K L
Sbjct: 583 CNHQRTVPKSFDNTLEKMTAQLDQLKEQLQDLKKMQVLIQSGKSMSIQLKQSTANENGDE 642
Query: 853 ------MKDSDGKRKRN-LAPE--ALERKMAQTNA---KIEKMERDMKTKEDLKTVALGT 900
+KD K+ +N L P+ +LE+ +T A K+ + ++ K D K VALGT
Sbjct: 643 KEDQKDLKDLLAKKAQNHLFPKTPSLEQVKKRTEAWKKKMNTLAIRLQDKSDNKQVALGT 702
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKINY+DPRI+VAWCKR+EVPI +F K+L KF WAMD P+++F
Sbjct: 703 SKINYMDPRISVAWCKRNEVPISAVFAKTLREKFVWAMDAAPDWKF 748
>gi|367017033|ref|XP_003683015.1| hypothetical protein TDEL_0G04370 [Torulaspora delbrueckii]
gi|359750678|emb|CCE93804.1| hypothetical protein TDEL_0G04370 [Torulaspora delbrueckii]
Length = 760
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/632 (44%), Positives = 391/632 (61%), Gaps = 86/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGVIFPP Y LP VK+ Y GK V+L P+ EEVA +A +L +D+ +
Sbjct: 132 DDTIKWTTLKHNGVIFPPAYEPLPSHVKLYYDGKPVDLPPKAEEVAGFYAALLQSDHTKN 191
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F+ NF++D+ ++L + N + I+ CDF ++++++ QKE++KQ+SS+EKK L
Sbjct: 192 PVFQRNFFDDFLEVLKECGGTLNGIEIKVFSKCDFNKMFEYYELQKEQRKQLSSQEKKQL 251
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ EK K EE Y + +DG KE+VGNFR+EPPGLFRGRG HPK GKLK+R+ P D+ +N+
Sbjct: 252 RLEKEKLEEPYKFCELDGRKEQVGNFRIEPPGLFRGRGAHPKTGKLKRRVYPEDVVLNLD 311
Query: 570 KDVPIPECPIP-GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
+ PIP P+P G++W E++HDNTV WLA W + I+ FKYV AA+SSL G SD +K+
Sbjct: 312 NEAPIP--PLPEGQNWGEIRHDNTVQWLAMWRENIS-NSFKYVRFAANSSLNGLSDFKKF 368
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EKAR+LKD+I IR YTK+ S+ RQ +VA YLID ALRAG EK +DEADTVGCC
Sbjct: 369 EKARQLKDHIDPIRKDYTKNLKSKIMLERQKSVAIYLIDVFALRAGGEKSEDEADTVGCC 428
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLD 747
+L+ +V PP + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 429 SLRYEHVTLKPPTTVIFDFLGKDSIRFYQEVEVDKQVFKNLAIFKRPPKQPGHQLFDRLD 488
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIIC 807
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+C
Sbjct: 489 PSILNKHLQHYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKLLKYNAANRTVAILC 548
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPP------------- 851
NHQR+V+KTH+ + + ++KI +L K LK + LD+ + + P
Sbjct: 549 NHQRSVTKTHAQSVQKASDKIRELEWQKIRLKKAILQLDKKQMKERPKFFEEVEDITKED 608
Query: 852 ---------------------------------LMKDSDGKR------------KRNLAP 866
L+K+SD K ++ L
Sbjct: 609 EMAIHKRIIEREVEKCHKKFARDNDKRKFENMELLKESDLKEWLDKVEEQRLNFEQELKT 668
Query: 867 EALERKMAQT----NAKIEKMER-------DMKTKEDLKTVALGTSKINYLDPRITVAWC 915
+E KMA T + +IEK+++ ++ KE+ V+LGTSKINY+DPR++V +C
Sbjct: 669 GVVELKMASTVEKLDKQIEKLDQRIQNSAIQLRDKEENSQVSLGTSKINYIDPRLSVVFC 728
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K++ VPIEKIF KSL KF WA++ VD +RF
Sbjct: 729 KKYGVPIEKIFTKSLREKFKWAVESVDENWRF 760
>gi|296421046|ref|XP_002840077.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636289|emb|CAZ84268.1| unnamed protein product [Tuber melanosporum]
Length = 938
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 287/627 (45%), Positives = 376/627 (59%), Gaps = 82/627 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG +KWTTL+HNGV+FPP Y LP VKM Y G EV L E EEVA F MLDT +
Sbjct: 316 DGTQKWTTLMHNGVLFPPAYESLPKHVKMKYGGVEVTLPLEAEEVAGFFGAMLDTQHASN 375
Query: 456 PKFRENFWNDWRKLLGKNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKN 514
P F ENF+ D++ +L HV I + + CDFKP+YD+ +E+K +KK + +KALK EK+
Sbjct: 376 PTFAENFFKDFQAIL--KHVNILSFQKCDFKPMYDYFEEKKAEKKALGLAGRKALKAEKD 433
Query: 515 KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPI 574
K EEKY++ +DG KEKVGNFRVEPPGLFRGRGEHPK G +K R+QP +TINIGK+ +
Sbjct: 434 KAEEKYLYCYLDGRKEKVGNFRVEPPGLFRGRGEHPKTGMVKARVQPEQVTINIGKEATV 493
Query: 575 PECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKL 634
P P PG SW +V HDNTVTWLA W + IN KYV LAA+SSLKG SD +K+EKAR+L
Sbjct: 494 P-APPPGHSWADVIHDNTVTWLATWKENIN-GNIKYVMLAATSSLKGMSDFKKFEKAREL 551
Query: 635 KDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN 694
K++I IR YT+D S RQ A A YLIDKLALRAGNEK DDEADTVGCC+L+ +
Sbjct: 552 KNHIDRIREDYTRDLKSELMADRQRATAMYLIDKLALRAGNEKSDDEADTVGCCSLRYEH 611
Query: 695 VECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNA 753
+ PPN + FDFLGKDSI++ V V+K + F+ K + D +FD+LDT +LN
Sbjct: 612 ITLEPPNVVVFDFLGKDSIRFYQKTPVIHQVFKNLKIFKKAPKTKGDMIFDRLDTTQLNK 671
Query: 754 HLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTV 813
HL+ M GL+AKVFRTYNAS T+ L++ +G V K Y ANK+VAI+CNHQRTV
Sbjct: 672 HLQNYMQGLSAKVFRTYNASWTMQEQLDEIPNEGAVHEKYAAYNLANKKVAILCNHQRTV 731
Query: 814 SKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPPL-------MKDSDGKRKRN 863
S TH M + EKI+ L K LK + + L+ +K K P + D + ++
Sbjct: 732 STTHETMMQKQEEKIKGLRYQKLRLKRMILSLEPTRKKKNPAFFKPDPEIDDEEWIKEHQ 791
Query: 864 LA-----PEALERKMAQTNAKI----EKMERDMKTKEDLK-------------------- 894
+ E + +K + N K+ EK+ +D + KE L+
Sbjct: 792 FSLVEQEKERITKKFEKDNEKLQENGEKVLKDKELKERLQVIKDMEAEFKTENKTGKIEP 851
Query: 895 ----TVALGTSKINYLDPRI------------------------------TVAWCKRHEV 920
TV ++I ++ RI TV +CK++ V
Sbjct: 852 KRGATVEKLEAQIQKMEERIKKQETEAQVREDNKTVALGTSKINYIDPRLTVMFCKKYGV 911
Query: 921 PIEKIFNKSLLAKFAWAMD-VDPEFRF 946
PIEKIF K+L KF WA++ D +++F
Sbjct: 912 PIEKIFAKTLRDKFKWAIESADGDWKF 938
>gi|24642138|ref|NP_727841.1| topoisomerase 1, isoform B [Drosophila melanogaster]
gi|22833158|gb|AAN09660.1| topoisomerase 1, isoform B [Drosophila melanogaster]
Length = 581
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/558 (48%), Positives = 357/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 48 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 107
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S EEK K E
Sbjct: 108 NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 167
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD +P
Sbjct: 168 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVP-S 226
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 227 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 285
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 286 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 345
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 346 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 405
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 406 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 465
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + ++ + KKGK L
Sbjct: 466 SVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK------------------QL 507
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct: 508 ERLRDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 563
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 564 QRTKFLWAVHMADENYRF 581
>gi|170035478|ref|XP_001845596.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167877508|gb|EDS40891.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 962
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/550 (48%), Positives = 361/550 (65%), Gaps = 23/550 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVA +A M++ +Y K F
Sbjct: 418 KWNFLEHKGPVFAPPYDPLPENVKFEYDGKVMKLSQDTEEVAGFYARMIEHEYTSKDVFN 477
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + I++L+ C+FK ++ + + EK + S EEK ALKE+
Sbjct: 478 DNFFKDWRKTMTSSEREKIKDLKKCNFKYMHAYFTDLSEKNRNRSKEEKLALKEQNEALV 537
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y +DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+R+ P D+ IN KD P+
Sbjct: 538 KEYGICNIDGHKEKIGNFRIEPPGLFRGRGEHPKMGLVKRRVMPEDVIINCAKDSVYPKA 597
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDNTV+WLA W + + + KYV L SS LKG+ D +KYE AR+L +
Sbjct: 598 P-EGHRWKEVRHDNTVSWLASWTENVQG-QVKYVMLNPSSKLKGEKDWQKYETARRLLKH 655
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++E
Sbjct: 656 IDKIRDTYRDEWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIEL 715
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDFLGKDSI+Y N VEVE V+K + F+ KK DDLFD+L+T+ LN
Sbjct: 716 HKELNGKENVVVFDFLGKDSIRYYNEVEVEKRVFKNLELFKENKKPGDDLFDRLNTSVLN 775
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQ 810
HL++LM GLTAKVFRT+NAS TL L + T D ++ V K+ Y RAN+ VAI+CNHQ
Sbjct: 776 EHLRDLMDGLTAKVFRTFNASFTLQNQLAELT-DPNMTVPEKMLAYNRANRAVAILCNHQ 834
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R V KTH MS L EKI K ++ + +L K+G G K ++ + +
Sbjct: 835 RAVPKTHDKSMSNLKEKIRLKKEAVETCQRELKDMKRG---------GSVKGSVDRDKKQ 885
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+++ + +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPIEKIFNK+
Sbjct: 886 KQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIEKIFNKTQ 945
Query: 931 LAKFAWAMDV 940
KF WA+D+
Sbjct: 946 RDKFRWAIDM 955
>gi|15723144|emb|CAA23015.1| topoisomerase I alpha [Takifugu rubripes]
Length = 767
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 274/563 (48%), Positives = 359/563 (63%), Gaps = 20/563 (3%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
S DG K W L H G +F PPY LP VK Y GK + L EEVAT FA MLD +Y
Sbjct: 213 STDGSK-WRFLEHKGPVFAPPYEPLPDKVKFYYDGKLMKLAAPAEEVATFFAKMLDHEYT 271
Query: 454 QKPKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
K FR+NF+ DWRK + I +L C+F + D+ + Q E +KQMS EEK+ +KE
Sbjct: 272 TKDVFRKNFFKDWRKEMTSEEKSKITDLNKCNFAGMNDYFKAQSEARKQMSKEEKQKIKE 331
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
+ + ++Y + I+D KE++GNFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD
Sbjct: 332 DNERILQEYGFCIMDNHKERIGNFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKD 391
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
P+ P PG WKEV+HDN VTWLA W + I KY+ L SS +KG+ D +KYE A
Sbjct: 392 SKHPK-PPPGTKWKEVRHDNKVTWLASWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETA 449
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTL 690
R+LK + IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L
Sbjct: 450 RRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSL 509
Query: 691 KVGNVECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDK 745
+V ++ P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+
Sbjct: 510 RVEHINLYPKLDDQEYVVEFDFLGKDSIRYYNRIPVEKRVFKNLQLFLENKQPGDDLFDR 569
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVA 804
L+T+ LN HL+ELM GLTAKVFRTYNASITL L + D V KI Y RAN+ VA
Sbjct: 570 LNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLKELSCSDDSVPAKILSYNRANRAVA 629
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
I+CNHQR KT M L KI++ + L R L +A K + D K+ +
Sbjct: 630 ILCNHQRAPPKTFEKSMQNLQTKIDEKQKQLSAARKQL-KAAKAEHKASHDDKSKKAVEV 688
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
+A++R Q + K++ +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEK
Sbjct: 689 KRKAVQRIEEQ----LMKLQVQATDREENKQIALGTSKLNYLDPRISVAWCKKFGIPIEK 744
Query: 925 IFNKSLLAKFAWAMDV-DPEFRF 946
I+NK+ KFAWA+D+ + +F F
Sbjct: 745 IYNKTQREKFAWAIDMAEKDFEF 767
>gi|255982630|gb|ACU45746.1| AT12251p [Drosophila melanogaster]
Length = 581
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/558 (48%), Positives = 356/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 48 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 107
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S EEK K E
Sbjct: 108 NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 167
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD +P
Sbjct: 168 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVP-S 226
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 227 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 285
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 286 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 345
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L T LN
Sbjct: 346 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLKTQVLN 405
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 406 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 465
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + ++ + KKGK L
Sbjct: 466 SVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK------------------QL 507
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct: 508 ERLRDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 563
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 564 QRTKFLWAVHMADENYRF 581
>gi|348510309|ref|XP_003442688.1| PREDICTED: DNA topoisomerase 1-like [Oreochromis niloticus]
Length = 754
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 273/557 (49%), Positives = 365/557 (65%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y +P VK Y GK + L+PE EEVAT FA MLD +Y K FR
Sbjct: 205 KWKFLEHKGPVFAPAYEPIPSHVKFYYDGKHMKLSPEAEEVATFFAKMLDHEYTTKDIFR 264
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L+ CDF + ++ + Q E +K MS EEK+ +KEE +
Sbjct: 265 KNFFKDWRKEMTSEERAKITDLKKCDFTEMSEYFKAQSEARKAMSKEEKQKIKEENERIL 324
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD +PE
Sbjct: 325 QQYGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPQDIIINCSKDSKVPEP 384
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 385 P-PGTKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 442
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 443 VDRIRAQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 502
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P N+ ++FDFLGKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 503 LYPENEGQEYVVEFDFLGKDSIRYYNRVPVEKRVFKNLQLFMENKEPDDDLFDRLNTSIL 562
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L + T + ++ KI Y RAN+ VAI+CNHQ
Sbjct: 563 NKHLQELMDGLTAKVFRTYNASITLQQQLKELTTAEENIPAKILSYNRANRAVAILCNHQ 622
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ + L D + +L A K + KD K+ A E+ +
Sbjct: 623 RAPPKTFEKSMQNLQSKIDAKRDQLADAKRELKSA-KADAKVRKDEKSKK----AVESKK 677
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +P+EKI+NK+
Sbjct: 678 KAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPVEKIYNKTQ 737
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 738 REKFAWAIDMAEEDYEF 754
>gi|388452708|ref|NP_001253441.1| DNA topoisomerase 1 [Macaca mulatta]
gi|380816072|gb|AFE79910.1| DNA topoisomerase 1 [Macaca mulatta]
gi|383421209|gb|AFH33818.1| DNA topoisomerase 1 [Macaca mulatta]
gi|384949142|gb|AFI38176.1| DNA topoisomerase 1 [Macaca mulatta]
Length = 767
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|50291575|ref|XP_448220.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527531|emb|CAG61171.1| unnamed protein product [Candida glabrata]
Length = 744
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 287/635 (45%), Positives = 382/635 (60%), Gaps = 91/635 (14%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW +L HNGV+FPP Y LP VK+ Y GK V+L P EEVA FA +L TD+ +
Sbjct: 115 DDTIKWVSLKHNGVLFPPEYEPLPSHVKLYYDGKPVDLPPAAEEVAGFFANLLHTDHAKN 174
Query: 456 PKFRENFWNDWRKLLGKNHVIQN------LEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ D+ ++L ++ +N + CDF + + + +KE+K+ MS EEKK +
Sbjct: 175 PVFQKNFFEDFLQVLKESGGTRNKINITVFKKCDFSKMNQYFELKKEEKRNMSREEKKQI 234
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K EK+K EEK+ + +DG KE+VGNFRVEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 235 KLEKDKFEEKFKFCELDGRKEQVGNFRVEPPDLFRGRGAHPKTGKLKRRVYPEDIILNLS 294
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PIP P G W E++HDNTV WLA W + I FKYV LAA+SSL GQSD +K+E
Sbjct: 295 KDAPIPPAP-QGHHWGEIRHDNTVQWLAMWKENIFG-SFKYVRLAANSSLNGQSDLKKFE 352
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI IR Y + F S+ RQ AVATY ID ALRAG EK +DEADTVGCC+
Sbjct: 353 KARELKKYIGDIRKDYRESFKSKIMLERQKAVATYFIDVFALRAGGEKSEDEADTVGCCS 412
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI+Y VEVE V+K + F+ KK DDLFD+LD
Sbjct: 413 LRFEHVTLKPPNTVIFDFLGKDSIRYHQEVEVEKQVFKNLKIFKRPPKKDGDDLFDRLDP 472
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+CN
Sbjct: 473 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKLLKYNAANRAVAILCN 532
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVLKDLRVDLDRAKKGKPPLMKDSD--- 857
HQR+V+K H+ + ++ +KIE+L KG+ L+++ RA+K K + +D
Sbjct: 533 HQRSVTKGHAQSVEKMNQKIEELLWQKIRLKKGI---LQLEPSRAQKNKKYFKEINDMTK 589
Query: 858 ------GKRKRNLAPEALERKMAQTNAKI------------------------------- 880
KR + E L++K + N K+
Sbjct: 590 VEQATIHKRIVDRERERLKKKFERDNEKLVAEKKDPLPKTELKEWLKKVDDLEKQYKTEL 649
Query: 881 ---------------------EKMERDMKT-------KEDLKTVALGTSKINYLDPRITV 912
EK+E +KT KE+ V+LGTSKINY+DPR++V
Sbjct: 650 KTGKVELKATMQSVEKLEKQVEKLEERIKTSSIQLKDKEENSQVSLGTSKINYIDPRLSV 709
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+CK++ VPIEKIF K+L KFAWA++ D +RF
Sbjct: 710 VFCKKYNVPIEKIFTKTLREKFAWAIESADENWRF 744
>gi|403290675|ref|XP_003936435.1| PREDICTED: DNA topoisomerase 1 [Saimiri boliviensis boliviensis]
Length = 767
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|387539764|gb|AFJ70509.1| DNA topoisomerase 1 [Macaca mulatta]
Length = 767
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|297079|emb|CAA79748.1| DNA topoisomerase I [Cricetulus griseus]
Length = 767
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +VI NL CDF + + ++Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNVITNLSKCDFTQMSQYFKDQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMTDEDYEF 767
>gi|431894391|gb|ELK04191.1| DNA topoisomerase 1 [Pteropus alecto]
Length = 749
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 200 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEVFR 259
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 260 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 319
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 320 KEYGFCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 378
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 379 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 437
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 438 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 497
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+TA L
Sbjct: 498 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTAIL 557
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 558 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 617
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 618 RAPPKTFEKSMMNLQSKIDAKKEQLADARKDLKSA-KADAKVMKDAKTKK----VVESKK 672
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 673 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGVPIEKIYNKTQ 732
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 733 REKFAWAIDMADEDYEF 749
>gi|339806|gb|AAA61207.1| topoisomerase I [Homo sapiens]
Length = 765
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 276 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 335
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 394
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 395 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 514 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 634 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 688
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 689 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 748
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 749 REKFAWAIDMADEDYEF 765
>gi|11225260|ref|NP_003277.1| DNA topoisomerase 1 [Homo sapiens]
gi|114682024|ref|XP_514649.2| PREDICTED: DNA topoisomerase 1 [Pan troglodytes]
gi|397511150|ref|XP_003825942.1| PREDICTED: DNA topoisomerase 1 [Pan paniscus]
gi|426391693|ref|XP_004062202.1| PREDICTED: DNA topoisomerase 1 [Gorilla gorilla gorilla]
gi|12644118|sp|P11387.2|TOP1_HUMAN RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|339804|gb|AAA61206.1| topoisomerase I [Homo sapiens]
gi|119596400|gb|EAW75994.1| topoisomerase (DNA) I, isoform CRA_a [Homo sapiens]
gi|119596401|gb|EAW75995.1| topoisomerase (DNA) I, isoform CRA_a [Homo sapiens]
gi|158259347|dbj|BAF85632.1| unnamed protein product [Homo sapiens]
gi|410223172|gb|JAA08805.1| topoisomerase (DNA) I [Pan troglodytes]
gi|410249722|gb|JAA12828.1| topoisomerase (DNA) I [Pan troglodytes]
gi|410302634|gb|JAA29917.1| topoisomerase (DNA) I [Pan troglodytes]
gi|410337127|gb|JAA37510.1| topoisomerase (DNA) I [Pan troglodytes]
Length = 765
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 276 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 335
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 394
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 395 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 514 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 634 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 688
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 689 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 748
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 749 REKFAWAIDMADEDYEF 765
>gi|402882519|ref|XP_003904787.1| PREDICTED: DNA topoisomerase 1 [Papio anubis]
Length = 767
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 279/557 (50%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + +I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKTIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|194894661|ref|XP_001978102.1| GG17874 [Drosophila erecta]
gi|190649751|gb|EDV47029.1| GG17874 [Drosophila erecta]
Length = 969
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 270/558 (48%), Positives = 354/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 436 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPMELSEETEEAATFYAKMLNHDYCTKEVFN 495
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C F ++++ Q + EK+K + EEK K E
Sbjct: 496 NNFFKDFRKSMTSKEREIIKDFRKCGFNEMFNFFQAESEKRKAATKEEKLIKKNENEALM 555
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GK+ +P
Sbjct: 556 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKESKVP-S 614
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 615 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 673
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 674 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 733
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK DDLFD+L+T LN
Sbjct: 734 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKDGDDLFDRLNTQVLN 793
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 794 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 853
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + +K + KKGK L
Sbjct: 854 SVPKSHEKSMENLKEKIKAKREAIKKCEAEYHSRDEKKGK------------------QL 895
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct: 896 ERLKDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 951
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 952 QRTKFLWAVHMADENYRF 969
>gi|473581|gb|AAB60379.1| DNA topoisomerase I, partial [Homo sapiens]
Length = 761
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 212 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 271
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 272 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 331
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 332 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 390
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 391 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 449
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 450 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 509
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 510 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 569
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 570 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 629
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 630 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 684
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 685 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 744
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 745 REKFAWAIDMADEDYEF 761
>gi|332209058|ref|XP_003253628.1| PREDICTED: DNA topoisomerase 1 [Nomascus leucogenys]
Length = 767
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 279/557 (50%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|432102732|gb|ELK30211.1| DNA topoisomerase 1 [Myotis davidii]
Length = 751
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 202 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 261
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 262 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKIL 321
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 322 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 380
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 381 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 439
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 440 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 499
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+TA L
Sbjct: 500 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTAIL 559
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 560 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 619
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 620 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDTKTKK----VVESKK 674
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 675 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGVPIEKIYNKTQ 734
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 735 REKFAWAIDMADEDYEF 751
>gi|27881700|gb|AAH44646.1| TOP1MT protein [Homo sapiens]
Length = 602
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 267/557 (47%), Positives = 353/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 53 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 112
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 113 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 172
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 173 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPE- 231
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + I KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 232 PPAGHQWKEVRSDNTVTWLAAWTESIQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 290
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 291 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 350
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 351 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSL 410
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 411 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 470
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R T M L KI+ K +V RA+ + + G K E
Sbjct: 471 RATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQGDGKSRSVLEKKR 525
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 526 RLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 585
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 586 RERFAWALAMAGEDFEF 602
>gi|30411085|gb|AAH52285.1| Topoisomerase (DNA) I, mitochondrial [Homo sapiens]
gi|48734759|gb|AAH71914.1| Topoisomerase (DNA) I, mitochondrial [Homo sapiens]
gi|311346978|gb|ADP90414.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346992|gb|ADP90421.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346994|gb|ADP90422.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346996|gb|ADP90423.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347032|gb|ADP90441.1| mitochondrial DNA topoisomerase I [Homo sapiens]
Length = 601
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 267/557 (47%), Positives = 353/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + I KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESIQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R T M L KI+ K +V RA+ + + G K E
Sbjct: 470 RATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQGDGKSRSVLEKKR 524
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 525 RLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 584
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 585 RERFAWALAMAGEDFEF 601
>gi|403353776|gb|EJY76433.1| Eukaryotic DNA topoisomerase I, catalytic core family protein
[Oxytricha trifallax]
Length = 617
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 260/555 (46%), Positives = 362/555 (65%), Gaps = 19/555 (3%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW +L H+GV F Y PH VK+L+KG+ ++LTPEQEE+ +A ++D D+ +K R+N
Sbjct: 72 KWKSLEHHGVTFFAAYKPHYVKVLHKGQPMSLTPEQEEICNWWAQIIDQDFAKKDIVRKN 131
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYM 521
F + +L ++ + +L+ DF PI + QE KE +K +++EKK EE+ KQ+ Y
Sbjct: 132 FEKSFIELFDEDQGVTSLDDFDFAPIVRYLQEFKESRKNRTTDEKKRELEERQKQDAFYK 191
Query: 522 WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPG 581
+ ++DG EK+ NF VEPPG+FRGRG+HP GKLK RI P ++ INIG + PIP C IPG
Sbjct: 192 YCLIDGQLEKISNFMVEPPGIFRGRGDHPLAGKLKSRILPENVQINIGPEEPIPICNIPG 251
Query: 582 ESWKEVKHDNTVTWLAFWNDPINPKE---FKYVFLAASSSLKGQSDREKYEKARKLKDYI 638
SWK V + TWL+ + D K KYVFLAA S LKG++D++KYEKAR+LK I
Sbjct: 252 HSWKRVLSNPEATWLSHFKDERTEKSNNTGKYVFLAAESKLKGENDKKKYEKARRLKQNI 311
Query: 639 HSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECI 698
I+ Y S+D +Q+ V TYLIDKLALR GNEK +DEADTVGCC+LKV NV+
Sbjct: 312 KIIQRNYEDKMRSQDKVDQQLGVCTYLIDKLALRVGNEKGEDEADTVGCCSLKVKNVQLE 371
Query: 699 PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKEL 758
NK+ DFLGKDSI+Y+NTV+V VY+ I FQ GK +D+LF++++ ++LN +LKE+
Sbjct: 372 ADNKITLDFLGKDSIRYLNTVDVTPIVYQNIENFQKGKGPDDELFERINASRLNDYLKEM 431
Query: 759 MPGLTAKVFRTYNASITLDGMLNKG---TGDGDVAV-KIDVYQRANKEVAIICNHQRTVS 814
M L+AKVFRTYNAS+TL L + + DV K+D Y+ N+EVA +CNHQ+ +
Sbjct: 432 MEDLSAKVFRTYNASVTLQTQLQEHDNQLSEADVIQKKVDFYENCNREVARLCNHQKEAA 491
Query: 815 KTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMA 874
K H Q+ ++ + +E + L++L ++ + KKGK SD K P+ E+
Sbjct: 492 KNHDEQVIKMKDVLEQKQQKLRNLEAEMIKIKKGKGS----SDPK-----MPKTAEQCKI 542
Query: 875 QTNAKIEKMERDMKT---KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
Q E+ E+ + KE K ALGTSKINY+DPRIT++WCK EVPIEKIF +L+
Sbjct: 543 QIEKAREQYEQQLSRVTKKEQNKNYALGTSKINYMDPRITISWCKHKEVPIEKIFQPTLV 602
Query: 932 AKFAWAMDVDPEFRF 946
KF WAM+++P + F
Sbjct: 603 NKFTWAMNIEPGWEF 617
>gi|344236993|gb|EGV93096.1| DNA topoisomerase 1 [Cricetulus griseus]
Length = 715
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 166 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 225
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +VI NL CDF + + ++Q E +KQMS EEK +KEE K
Sbjct: 226 KNFFKDWRKEMTNDEKNVITNLSKCDFTQMSQYFKDQSEARKQMSKEEKLKIKEENEKLL 285
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 286 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 344
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 345 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 403
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 404 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 463
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 464 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 523
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 524 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 583
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 584 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 638
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 639 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 698
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 699 REKFAWAIDMTDEDYEF 715
>gi|38503303|sp|Q7YR26.1|TOP1_CERAE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|32400376|dbj|BAC78678.1| topoisomerase I [Chlorocebus aethiops]
Length = 767
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPDSVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|296200465|ref|XP_002747610.1| PREDICTED: DNA topoisomerase 1 [Callithrix jacchus]
Length = 767
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +++ NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIVTNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMADEDYEF 767
>gi|301118855|ref|XP_002907155.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262105667|gb|EEY63719.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 717
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 272/582 (46%), Positives = 372/582 (63%), Gaps = 38/582 (6%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM-LDTDYMQKPK--- 457
+W TL HNGV+FPPPY PH V +LY G+E+ LTP QEEVA+ +A + D + PK
Sbjct: 137 QWRTLEHNGVMFPPPYQPHHVPLLYNGQEIELTPSQEEVASFYAAIPKDGPQLGNPKTAK 196
Query: 458 -FRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
F +NF+ D++K+LGK H ++ +GCDF I ++ +E+KK M+ EEK KE++ +
Sbjct: 197 IFNKNFFTDFKKVLGKQHEVKTFDGCDFSRIAAHLEKLREEKKNMTKEEKLPEKEKREME 256
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
+A VDG EKVGNFR+EPPGLFRGRGEHPK G LK+R+ P D+T+N+G +P
Sbjct: 257 LFTNGFAFVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPI 316
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
C +PG +WK+V H +TV+WLA+WN+ + KYVF AASSS KG+SD KYEKAR+LK
Sbjct: 317 CNVPGHAWKQVIHRDTVSWLAYWNENVMGG-IKYVFFAASSSFKGKSDLAKYEKARRLKK 375
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 696
I IR YTK ++D +Q + A ++ID LALR GNEK +DEADTVGCC+L+V ++
Sbjct: 376 CIDKIRRDYTKGLKAKDMFTKQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMS 435
Query: 697 CIPPN-KLKFDFLGKDSIQYVNTVE------VELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
N + FLGKDS+ Y NTVE V VY + +F T K +N+++F +L
Sbjct: 436 FNDENCAVTLSFLGKDSMPYNNTVELAQYGDVGKQVYHNLQKFCTKKGKNEEVFHELSVT 495
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG-------DVAVKIDVYQRANKE 802
+LN HL LMPGL+AKVFRT+NAS TL+ L +G +VA K+ +Y AN++
Sbjct: 496 ELNKHLSSLMPGLSAKVFRTFNASFTLEKELPGPSGQELDPHGKLEVAPKVVLYNDANRK 555
Query: 803 VAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR--VDLDRAKKG--------KPPL 852
VAI+CNHQRT K+ + ++ ++ LK LKDL+ L A KG KP
Sbjct: 556 VAILCNHQRTAPKSFDTTLDKMNAQLGQLKDQLKDLKQMQKLIAAGKGSSVKLKKEKPAS 615
Query: 853 MKDSDGKRK--------RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKIN 904
K+ D K R + + + +K+ KI+ + ++ K D K VALGTSK+N
Sbjct: 616 EKEEDALAKKAQAHLFQRTPSADQVAKKIESWKKKIKALSLRLQDKTDNKEVALGTSKLN 675
Query: 905 YLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
Y+DPRITVAWCKR+EVPI +F+K+L KF WAMDVDP+++F
Sbjct: 676 YMDPRITVAWCKRNEVPISAVFSKTLREKFVWAMDVDPDWKF 717
>gi|16418461|ref|NP_443195.1| DNA topoisomerase I, mitochondrial isoform 1 precursor [Homo
sapiens]
gi|20140694|sp|Q969P6.1|TOP1M_HUMAN RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|15705401|gb|AAL05624.1|AF349017_1 topoisomerase I [Homo sapiens]
gi|15919359|gb|AAL10791.1| topoisomerase I [Homo sapiens]
gi|311346982|gb|ADP90416.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346984|gb|ADP90417.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346986|gb|ADP90418.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346990|gb|ADP90420.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347000|gb|ADP90425.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347002|gb|ADP90426.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347004|gb|ADP90427.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347006|gb|ADP90428.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347008|gb|ADP90429.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347010|gb|ADP90430.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347016|gb|ADP90433.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347018|gb|ADP90434.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347020|gb|ADP90435.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347022|gb|ADP90436.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347024|gb|ADP90437.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347028|gb|ADP90439.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347030|gb|ADP90440.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347034|gb|ADP90442.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347036|gb|ADP90443.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347038|gb|ADP90444.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347040|gb|ADP90445.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347042|gb|ADP90446.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347046|gb|ADP90448.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347052|gb|ADP90451.1| mitochondrial DNA topoisomerase I [Homo sapiens]
Length = 601
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 266/557 (47%), Positives = 353/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R T M L KI+ K +V RA+ + + G K E
Sbjct: 470 RATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQGDGKSRSVLEKKR 524
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 525 RLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 584
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 585 RERFAWALAMAGEDFEF 601
>gi|71661561|ref|XP_817800.1| DNA topoisomerase IB, large subunit [Trypanosoma cruzi strain CL
Brener]
gi|70883013|gb|EAN95949.1| DNA topoisomerase IB, large subunit, putative [Trypanosoma cruzi]
Length = 664
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/444 (54%), Positives = 310/444 (69%), Gaps = 5/444 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
GQK+W TL HNGV+FPP Y PHG+ + Y+G+E LTPE+EEVATMFAVM + DY + F
Sbjct: 45 GQKRWDTLCHNGVMFPPEYKPHGIPIYYEGREFKLTPEEEEVATMFAVMREHDYYRNEIF 104
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF++ WR++L K H I+ LE CDF+PIY WH ++EKK + EEKK L+ E K+
Sbjct: 105 RRNFFSSWREILDKRQHPIRRLELCDFEPIYQWHLREREKKLSRTKEEKKQLRLEAEKEA 164
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y W + DG KE+V NFRVEPPGLFRGRG+HP MGKLKKR++P DITINI + PIP+
Sbjct: 165 EPYKWCVWDGKKEQVANFRVEPPGLFRGRGQHPMMGKLKKRVEPEDITINIDEFSPIPKP 224
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV H++ VTWLA W D I FKYV LA SS++KGQSD K+EKAR+LK++
Sbjct: 225 P-EGHRWKEVLHEHNVTWLAMWRDSI-LGSFKYVMLAPSSAIKGQSDMLKFEKARELKNH 282
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IR Y +DF SR+ + Q AVA Y IDKLALR GNEK DEADTVGCC+L+V ++E
Sbjct: 283 VDEIRRCYIEDFESRELMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEHIEL 342
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
P + +KFDFLGKDSI+Y N V VY+ + +F GKK DD+FD + LN HLK
Sbjct: 343 KPDHVVKFDFLGKDSIRYENEAVVLPRVYELLRRFTKGKKTGDDIFDMITPTVLNDHLKS 402
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKG--TGDGDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + VA K+ + +AN EVAI+CNHQ+++SK
Sbjct: 403 FMAGLSAKVFRTYNASITLDRWFKEKPVPPSASVADKLAYFNKANTEVAILCNHQKSISK 462
Query: 816 THSAQMSRLTEKIEDLKGVLKDLR 839
H M +LT+K + ++ L+
Sbjct: 463 NHHNLMHQLTQKSSYTRTIIDALK 486
>gi|407411603|gb|EKF33593.1| DNA topoisomerase IB, large subunit [Trypanosoma cruzi marinkellei]
Length = 667
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/444 (54%), Positives = 310/444 (69%), Gaps = 5/444 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
GQK+W TL HNGV+FPP Y PHG+ + Y+G+E LTPE+EEVATMFAVM + DY + F
Sbjct: 45 GQKRWDTLSHNGVMFPPDYKPHGIPIYYEGREFKLTPEEEEVATMFAVMREHDYYRNEIF 104
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF++ WR++L + H I+ LE CDF+PIY WH ++EKK + EEKK L+ E K+
Sbjct: 105 RRNFFSSWREILDRRQHPIRRLELCDFEPIYQWHLREREKKLSRTKEEKKQLRLEAEKEA 164
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y W + DG KE+V NFRVEPPGLFRGRG+HP MGKLKKR++P DITINI + PIP+
Sbjct: 165 EPYKWCVWDGKKEQVANFRVEPPGLFRGRGQHPMMGKLKKRVEPEDITINIDEFSPIPKP 224
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV HD+ VTWLA W D I FKYV LA SS++KGQSD K+EKAR+LK++
Sbjct: 225 P-EGHRWKEVLHDHNVTWLAMWRDSI-LGSFKYVMLAPSSAIKGQSDMLKFEKARELKNH 282
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IR Y +DF SR+ + Q AVA Y IDKLALR GNEK DEADTVGCC+L+V ++E
Sbjct: 283 VDEIRRCYVEDFESREVMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEHIEL 342
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
P N +KFDFLGKDSI+Y N V VY+ + +F GK+ DD+FD + LN HLK
Sbjct: 343 KPDNVVKFDFLGKDSIRYENEAVVLPRVYELLRRFTKGKEPGDDIFDMITPTVLNDHLKS 402
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKG--TGDGDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + VA K+ + +AN EVAI+CNHQ+++SK
Sbjct: 403 FMAGLSAKVFRTYNASITLDRWFKEKPVPPSASVADKLAYFNKANTEVAILCNHQKSISK 462
Query: 816 THSAQMSRLTEKIEDLKGVLKDLR 839
H M +LT+K + ++ L+
Sbjct: 463 NHHNLMHQLTKKSSYTRTIIDALK 486
>gi|426242035|ref|XP_004014884.1| PREDICTED: DNA topoisomerase 1 [Ovis aries]
Length = 851
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 302 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 361
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 362 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 421
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 422 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 480
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 481 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 539
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 540 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 599
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 600 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 659
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 660 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 719
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ +A++
Sbjct: 720 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKKVVESKKKAVQ 778
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 779 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 834
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 835 REKFAWAIDMADEDYEF 851
>gi|119596402|gb|EAW75996.1| topoisomerase (DNA) I, isoform CRA_b [Homo sapiens]
Length = 768
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 219 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 278
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 279 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 338
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 339 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 397
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 398 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 456
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 457 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 516
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 517 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 576
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 577 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 636
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 637 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 691
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 692 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 751
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 752 REKFAWAIDMADEDYEF 768
>gi|345842372|ref|NP_001230963.1| DNA topoisomerase 1 [Cricetulus griseus]
gi|586107|sp|Q07050.1|TOP1_CRIGR RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|297077|emb|CAA79747.1| DNA topoisomerase I [Cricetulus griseus]
Length = 767
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +VI NL CDF + + ++Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNVITNLSKCDFTQMSQYFKDQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTV CC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVSCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMTDEDYEF 767
>gi|417404462|gb|JAA48983.1| Putative dna topoisomerase i [Desmodus rotundus]
Length = 766
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 217 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 276
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 277 KNFFKDWRKEMTNEEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 336
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD IP
Sbjct: 337 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKIP-S 395
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 396 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 454
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 455 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 514
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+TA L
Sbjct: 515 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTAIL 574
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 575 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 634
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ ++ E+ +
Sbjct: 635 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTRK----VVESKK 689
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 690 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGVPIEKIYNKTQ 749
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 750 REKFAWAIDMADEDYEF 766
>gi|57639320|gb|AAW55580.1| TOP1 [Macaca fascicularis]
Length = 560
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 11 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 70
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 71 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 130
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 131 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 190
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 191 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 248
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 249 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 308
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 309 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 368
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 369 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 428
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 429 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 483
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 484 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 543
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 544 REKFAWAIDMADEDYEF 560
>gi|223460080|gb|AAI36298.1| Topoisomerase (DNA) I [Homo sapiens]
Length = 765
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 276 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 335
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 394
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 395 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 514 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRT+NASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQDLMEGLTAKVFRTHNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 634 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 688
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 689 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 748
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 749 REKFAWAIDMADEDYEF 765
>gi|37729654|gb|AAO26204.1| type I topoisomerase [Trypanosoma cruzi]
Length = 664
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/447 (54%), Positives = 310/447 (69%), Gaps = 5/447 (1%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
S GQK+W TL HNGV+FPP Y PHG+ + Y+G+E LTPE+EEVATMFAVM + DY +
Sbjct: 42 STKGQKRWDTLCHNGVMFPPEYKPHGIPIYYEGREFKLTPEEEEVATMFAVMREHDYYRN 101
Query: 456 PKFRENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKN 514
FR NF++ WR++L + H I+ LE CDF+PIY WH ++EKK + EEKK L+ E
Sbjct: 102 EIFRRNFFSSWREILDRRQHPIRRLELCDFEPIYQWHLREREKKLSRTKEEKKQLRLEAE 161
Query: 515 KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPI 574
K+ E Y W + DG KE+V NFRVEPPGLFRGRG+HP MGKLKKR++P DITINI + PI
Sbjct: 162 KEAEPYKWCVWDGKKEQVANFRVEPPGLFRGRGQHPMMGKLKKRVEPEDITINIDEFSPI 221
Query: 575 PECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKL 634
P+ P G WKEV H++ VTWLA W D I FKYV LA SS++KGQSD K+EKAR+L
Sbjct: 222 PKPP-EGHRWKEVLHEHNVTWLAMWRDSI-LGSFKYVMLAPSSAIKGQSDMLKFEKAREL 279
Query: 635 KDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN 694
K+++ IR Y +DF SR+ + Q AVA Y IDKLALR GNEK DEADTVGCC+L+V +
Sbjct: 280 KNHVDEIRRCYIEDFESRELMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEH 339
Query: 695 VECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
+E P +KFDFLGKDSI+Y N V VY+ + +F GKK DD+FD + LN H
Sbjct: 340 IELKPDYVVKFDFLGKDSIRYENEAVVLPRVYELLRRFTKGKKTGDDIFDMITPTVLNDH 399
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTG--DGDVAVKIDVYQRANKEVAIICNHQRT 812
LK M GL+AKVFRTYNASITLD + VA K+ + +AN EVAI+CNHQ++
Sbjct: 400 LKSFMAGLSAKVFRTYNASITLDRWFKEKPVPPSASVADKLAYFNKANTEVAILCNHQKS 459
Query: 813 VSKTHSAQMSRLTEKIEDLKGVLKDLR 839
+SK H M +LT+K + ++ L+
Sbjct: 460 ISKNHHNLMHQLTQKSSYTRTIIDALK 486
>gi|348564020|ref|XP_003467804.1| PREDICTED: DNA topoisomerase 1-like [Cavia porcellus]
Length = 760
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EE+AT FA MLD +Y K FR
Sbjct: 211 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEIATFFAKMLDHEYTTKEIFR 270
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 271 KNFFKDWRKEMTNEEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 330
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 331 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRILPEDIIINCSKDAKVP-S 389
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 390 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 448
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 449 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 508
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 509 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 568
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 569 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 628
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 629 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 683
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K VALGTSK+NYLDPRITVAWCK+ VPIEKIFNK+
Sbjct: 684 KAVQRLEEQLMKLEVQATDREENKQVALGTSKLNYLDPRITVAWCKKWGVPIEKIFNKTQ 743
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 744 REKFAWAIDMADEDYEF 760
>gi|380794735|gb|AFE69243.1| DNA topoisomerase I, mitochondrial, partial [Macaca mulatta]
Length = 576
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/557 (47%), Positives = 352/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV Y GK + L+ + EEVAT + MLD +Y K FR
Sbjct: 27 KWRQLEHKGPYFAPPYEPLPDGVCFFYDGKPMRLSVKAEEVATFYGRMLDHEYTTKEVFR 86
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE K +
Sbjct: 87 KNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAEKLQ 146
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IP+
Sbjct: 147 QEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPK- 205
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I KYV L S LKG+ +K+E AR+L+ +
Sbjct: 206 PPAGHQWKEVRSDNTVMWLAAWTESIQ-NSIKYVMLNPCSKLKGEKAWQKFETARRLRGF 264
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 265 VDEIRSQYQADWKSQEMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 324
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKDSI+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 325 LHPEADGCQHVVEFDFLGKDSIRYYNRVPVEKPVYKNLQLFMKNKDPQDDLFDRLTTTSL 384
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL ELM GLTAKVFRTYNAS+TL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 385 NKHLHELMDGLTAKVFRTYNASVTLQEQLRALTRAEDSIAAKILSYNRANRAVAILCNHQ 444
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R S T M L KI+ K + + R +L +K + DGK + L E
Sbjct: 445 RATSSTFEKSMQNLQTKIQVKKEQVAEARAEL---RKARAEHKAQGDGKSRSVL--EKKR 499
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ + KE+ K VAL TSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 500 RLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 559
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 560 RERFAWALAMAGEDFEF 576
>gi|350594934|ref|XP_003134489.3| PREDICTED: DNA topoisomerase 1 [Sus scrofa]
Length = 809
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 260 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 319
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 320 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 379
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 380 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 438
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 439 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 497
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 498 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 557
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 558 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 617
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 618 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 677
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ +A++
Sbjct: 678 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKKVVESKKKAVQ 736
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 737 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 792
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 793 REKFAWAIDMADEDYEF 809
>gi|12018294|ref|NP_072137.1| DNA topoisomerase 1 [Rattus norvegicus]
gi|51316560|sp|Q9WUL0.1|TOP1_RAT RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|4809197|gb|AAD30137.1|AF140782_1 DNA topoisomerase I [Rattus norvegicus]
gi|149043044|gb|EDL96618.1| topoisomerase (DNA) I [Rattus norvegicus]
Length = 767
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMTDEDYEF 767
>gi|294896326|ref|XP_002775501.1| DNA topoisomerase I, putative [Perkinsus marinus ATCC 50983]
gi|239881724|gb|EER07317.1| DNA topoisomerase I, putative [Perkinsus marinus ATCC 50983]
Length = 647
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/561 (48%), Positives = 362/561 (64%), Gaps = 16/561 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
D KW+ L H+G+IF PPY PHGVKMLYKG+ ++L PE EEVAT FA L TD+ QK K
Sbjct: 91 DNAAKWSYLEHHGMIFTPPYEPHGVKMLYKGEPIDLPPEAEEVATFFAQTLGTDWCQKEK 150
Query: 458 FRENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
F+ NFW D++ L K I L+ CDF+PI ++ ++ E KK + EEK+A KE K
Sbjct: 151 FQNNFWADFQAKLPKELKSKITKLKDCDFEPIKNYLDKRSEAKKARTKEEKEAEKEAKRL 210
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+ Y IVD ++E+VGNFRVEPP LFRGRG+HPKMGKLK+ I P D+T+N D P P
Sbjct: 211 NDHPYTHVIVDELRERVGNFRVEPPNLFRGRGDHPKMGKLKQYILPEDVTVNCAADAPAP 270
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
CP+PG ++K+V HD VTWLA++ D IN + KYVFL A+S KGQSD KYEKARKLK
Sbjct: 271 RCPVPGHAYKDVVHDPAVTWLAWFTDTIN-NQVKYVFLNAASGFKGQSDWLKYEKARKLK 329
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGN 694
YI IR YTK S D +++ A YLID+LALR GNEK+ ++EADTVGCC+L+V +
Sbjct: 330 KYIRGIRDDYTKKMKSTDDDEKELGTAVYLIDRLALRVGNEKNTEEEADTVGCCSLRVEH 389
Query: 695 VECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
+ NK+ DFLGKDSI+Y+NTV+V+ VYK + +K D +F +D +K+N +
Sbjct: 390 MTFEADNKITLDFLGKDSIRYLNTVQVDPLVYKNLKALCKARKPEDMIFS-IDPSKVNDY 448
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQ 810
K+ M L+AKVFRTYNASITL+ L K + D + + Y AN+ VAI+CNHQ
Sbjct: 449 FKQFMQELSAKVFRTYNASITLEQELCKFDPEEHDISDPSEMVKFYNDANRRVAILCNHQ 508
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR-----AKKGKPPLMKDSDGKRKRNLA 865
R K H A M RL +K+ D + L+ L D K ++ + ++ N+
Sbjct: 509 RAPPKQHEAGMERLKKKLADQEATLRGLEGRRDELLGKTVSKDVKEIIVEKKLEKSNNM- 567
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
++L RK+ E+ + + KED KTV+L TSKINY+DPRI+VA+CK H+ PIEKI
Sbjct: 568 -DSLVRKIKSQKLAAERTKIQIADKEDNKTVSLTTSKINYMDPRISVAFCKSHDCPIEKI 626
Query: 926 FNKSLLAKFAWAMDVDPEFRF 946
F K++ KF WAM +RF
Sbjct: 627 FAKTIRNKFPWAMHSKSTWRF 647
>gi|167527420|ref|XP_001748042.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773460|gb|EDQ87099.1| predicted protein [Monosiga brevicollis MX1]
Length = 2575
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/533 (49%), Positives = 353/533 (66%), Gaps = 12/533 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DGQK W TL H G +FPP Y LP GV +LY GK L PE EE+A +A+ML DY+ K
Sbjct: 1865 DGQK-WRTLTHRGPLFPPAYEPLPKGVHLLYDGKPYLLKPEAEEIAGFYAMMLTRDYVHK 1923
Query: 456 PKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F ENF +DWR + + +++ CDF I+ +Q++ E +K S EEK+ KE +
Sbjct: 1924 DIFNENFMHDWRANMTPQERKDLTDIKKCDFSLIHSHYQQRAEARKAASKEEKEKRKEAE 1983
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K +E+Y +A++DG K +GNFR+EPPGLF+GRGEHPKMGKLK R+ P D+ IN+G
Sbjct: 1984 AKLKEEYGFALMDGRKVTIGNFRIEPPGLFQGRGEHPKMGKLKLRVMPEDVIINVGPKDK 2043
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+PE P G WKEVKHDNTVTWLA W + I + KY+ L+A + +KG++D +KYE ARK
Sbjct: 2044 VPEPPA-GHKWKEVKHDNTVTWLAGWKENIQDQN-KYIMLSADTHIKGRNDWKKYETARK 2101
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LK+++ IR YT+D S+ RQ A A Y IDKLALRAG EKD +E ADTVGCC+L+V
Sbjct: 2102 LKEHVDKIRRDYTRDLKSKLMFERQRATALYFIDKLALRAGGEKDAEEQADTVGCCSLRV 2161
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
++E +P ++L FDFLGKDSI+Y N V+V+ V+K +G F+ K+ D+LFD+L T +LN
Sbjct: 2162 EHLELLPGDELVFDFLGKDSIRYQNQVKVDHQVWKNVGHFKKSKEPGDELFDRLRTQQLN 2221
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRT 812
+L+ LM GLTAKVFRTYNASITL L G V K+ YQRAN+ VAI+CNHQR
Sbjct: 2222 EYLQSLMDGLTAKVFRTYNASITLQDQLKSTPAGGTVEEKLLAYQRANRAVAILCNHQRA 2281
Query: 813 VSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL-APEALER 871
KTH QM RL E + ++ K+L + KK K L K +L + L+R
Sbjct: 2282 APKTHDEQMERLDEALVKIQ---KELDSTIKERKKLKKDLRAQGSDVSKTDLNRLDVLKR 2338
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
K+ + ++ K + KE+ K +AL TSK+NYLDPRI+VAWCK H+VP++K
Sbjct: 2339 KVDRLEERLHKKQIAKVDKEENKCIALSTSKLNYLDPRISVAWCKTHDVPVDK 2391
>gi|311346980|gb|ADP90415.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346988|gb|ADP90419.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346998|gb|ADP90424.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347012|gb|ADP90431.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347014|gb|ADP90432.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347026|gb|ADP90438.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347044|gb|ADP90447.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347048|gb|ADP90449.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347050|gb|ADP90450.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347054|gb|ADP90452.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347056|gb|ADP90453.1| mitochondrial DNA topoisomerase I [Homo sapiens]
Length = 601
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/562 (47%), Positives = 355/562 (63%), Gaps = 29/562 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK-----RKRNLA 865
R T M L KI+ K + + ++ + DGK K+
Sbjct: 470 RATPSTFEKSMQNLQTKIQAKK---EQVAEARAELRRARAEHKAQGDGKSRSVLEKKRWL 526
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
E L+ ++AQ + + KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI
Sbjct: 527 LEKLQEQLAQLSVQ-------ATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKI 579
Query: 926 FNKSLLAKFAWAMDVDPE-FRF 946
++K+ +FAWA+ + E F F
Sbjct: 580 YSKTQRERFAWALAMAGEDFEF 601
>gi|451927077|gb|AGF84955.1| topoisomerase 1b [Moumouvirus goulette]
Length = 542
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/561 (46%), Positives = 355/561 (63%), Gaps = 38/561 (6%)
Query: 393 LPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
L G +KKWTTL HNGV+FPP Y+ H V ++Y+G E+ L EE+AT++A +++TDY
Sbjct: 13 LQQLGGAKKKWTTLEHNGVLFPPEYVKHNVPVIYQGDEIILDTNSEEIATLYAKLIETDY 72
Query: 453 MQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
++ F +NFW+DWRK+LG NH+IQNLE DF+PIY++ EQKE+KK + L+E+
Sbjct: 73 IKNRTFNKNFWSDWRKVLGPNHIIQNLEDVDFRPIYNYILEQKEEKKLDPT-----LREK 127
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
+ +EEKY +A+VDG ++ VGNFR+EPPG+F GRG +PK G +KKRI P DI INIGK+
Sbjct: 128 RLIEEEKYKFALVDGKEQPVGNFRIEPPGIFLGRGCNPKSGHVKKRIYPEDIIINIGKNT 187
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
PIPE P+PG W ++ HD TV WLA + D I K KYV+L A S K +SD K++ AR
Sbjct: 188 PIPE-PLPGHQWMDIIHDQTVEWLAAYKDTITGK-MKYVWLGAQSDFKAKSDLNKFDLAR 245
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLK I IR S D RQIA A Y ID ALR GNEK DDE DTVG +L++
Sbjct: 246 KLKRKIKQIRTENEISLRSDDKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRI 305
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+V + N+++ DFLGKDS++Y T+E++ VY+ + + GK +D LFD + +N
Sbjct: 306 EHVNLLDGNRVRLDFLGKDSVRYNRTLEIDSQVYQNLVELMEGKSSSDQLFDLITPTDIN 365
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-------VAVKIDVYQRANKEVAI 805
+L+ M LTAKVFRTYNAS LNK D + + +D + +AN +VA
Sbjct: 366 KYLQSFMKNLTAKVFRTYNASNLFQKELNKINKKYDSYDEADKINILLDDFNKANAKVAQ 425
Query: 806 ICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA 865
+CNHQ+ ++K+ + Q+ +L E I KK + L K K+K
Sbjct: 426 LCNHQKNITKSTNEQLKKLDESI-----------------KKAQDKLRKARRSKKKNQQT 468
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
E LE N K K +R +KT +LK ++LGTSKINY+DPRITVA+ KRH +PI+KI
Sbjct: 469 IERLE-----NNVKKLKSKRALKT--ELKNISLGTSKINYIDPRITVAFMKRHNLPIDKI 521
Query: 926 FNKSLLAKFAWAMDVDPEFRF 946
F+K+L KF WA+DVD F F
Sbjct: 522 FSKTLQDKFKWALDVDENFVF 542
>gi|440910957|gb|ELR60692.1| DNA topoisomerase 1, partial [Bos grunniens mutus]
Length = 750
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 201 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 260
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 261 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 320
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 321 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 379
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 380 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 438
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 439 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 498
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 499 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 558
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 559 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 618
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ E+ +
Sbjct: 619 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKK----VVESKK 673
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 674 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 733
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 734 REKFAWAIDMADEDYEF 750
>gi|328723881|ref|XP_001943026.2| PREDICTED: DNA topoisomerase 1-like isoform 1 [Acyrthosiphon pisum]
gi|328723885|ref|XP_003247969.1| PREDICTED: DNA topoisomerase 1-like isoform 3 [Acyrthosiphon pisum]
Length = 747
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/558 (50%), Positives = 362/558 (64%), Gaps = 23/558 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y LP VK Y GK+V L+ EEVAT +A ML+ DY K F
Sbjct: 200 KWKFLEHKGPVFAPAYEPLPSNVKFYYNGKQVVLSELAEEVATFYAKMLEHDYTTKEVFN 259
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK + + +I +L C+FK + + ++ E++K MS EEKK +KEE +
Sbjct: 260 KNFLKDWRKTMTPKEKELITDLSLCNFKEMNVYFTKKSEERKAMSKEEKKKIKEENEALQ 319
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMG LKKR+ P D+ IN KD IP+
Sbjct: 320 KEYGFCTIDGHKEKIGNFKIEPPGLFRGRGEHPKMGMLKKRVVPEDVLINCSKDSNIPKP 379
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HD VTWLA W + + + KYV L SS LKG+ D +KYE AR+L
Sbjct: 380 P-PGHKWKEVRHDFGVTWLASWIENVQG-QVKYVMLNPSSKLKGEKDWQKYETARRLAKS 437
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y D+ SR+ RQ +VA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 438 IDKIRENYINDWKSREMHVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 497
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F KK +DDLFD+L+T+ LN
Sbjct: 498 HEEFNDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLKIFMENKKGSDDLFDRLNTSILN 557
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRT+NAS TL L K T D VA KI Y RAN+ VAI+CNHQR
Sbjct: 558 QHLHELMDGLTAKVFRTFNASWTLQQQLEKLTDPDVSVAEKILQYNRANRAVAILCNHQR 617
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA--PEAL 869
+ KTH M L EKI+ + +K+ + +AK+ +KD K L +AL
Sbjct: 618 AIPKTHEKSMGNLKEKIQTKRAAVKEAKEQYKQAKRD----VKDGSVHSKTQLEKRKKAL 673
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER + + K+E E D KE+ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 674 ER-LKEQLTKLEVQETD---KEENKTIALGTSKLNYLDPRISVAWCKKFNVPIEKIYNKT 729
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+D+ PE+ F
Sbjct: 730 QRDKFRWAIDMAGPEYVF 747
>gi|330417918|ref|NP_001193416.1| DNA topoisomerase 1 [Bos taurus]
gi|296480941|tpg|DAA23056.1| TPA: topoisomerase (DNA) I [Bos taurus]
Length = 769
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 220 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 279
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 280 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 339
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 340 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 398
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 399 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 457
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 458 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 517
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 518 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 577
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 578 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 637
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ E+ +
Sbjct: 638 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKK----VVESKK 692
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 693 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 752
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 753 REKFAWAIDMADEDYEF 769
>gi|301766206|ref|XP_002918524.1| PREDICTED: DNA topoisomerase 1-like [Ailuropoda melanoleuca]
Length = 882
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 333 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 392
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 393 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 452
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 453 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 512
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 513 PT-GHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 570
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 571 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 630
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 631 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 690
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 691 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 750
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ +A++
Sbjct: 751 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKKVVESKKKAVQ 809
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 810 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 865
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 866 REKFAWAIDMADEDYEF 882
>gi|220618|dbj|BAA00950.1| DNA topoisomerase I [Mus musculus]
Length = 767
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/558 (50%), Positives = 359/558 (64%), Gaps = 21/558 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLL---GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
+NF+ DWRK + GKN I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDGKN-TITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKL 336
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 337 LKEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP- 395
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 396 SPPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKK 454
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV 695
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 455 CVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHI 514
Query: 696 ECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T
Sbjct: 515 NLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGI 574
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNH 809
LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNH
Sbjct: 575 LNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNH 634
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEAL 869
QR KT M L KI+ K L D R DL A K +MKD+ K+ E+
Sbjct: 635 QRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESK 689
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 690 KKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
Query: 930 LLAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 750 QREKFAWAIDMTDEDYEF 767
>gi|157838061|pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
gi|157838062|pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 42 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 101
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 102 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 162 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 221
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 222 P-PGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 280 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 339
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 340 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 399
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 400 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 459
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 460 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 514
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N+LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 515 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQ 574
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 575 REKFAWAIDMADEDYEF 591
>gi|340378353|ref|XP_003387692.1| PREDICTED: DNA topoisomerase 1-like [Amphimedon queenslandica]
Length = 712
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/557 (50%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL H G F PPY LP VK Y GK + L+ EE AT FA MLD DY K F
Sbjct: 163 KWLTLEHKGPYFAPPYERLPSDVKFYYNGKPMKLSEAAEEAATFFAKMLDHDYTSKDVFC 222
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + I++ C+FK I+++ + E+KKQM+ EEKK +KE +
Sbjct: 223 NNFFADWRKEMTSEEAATIKDFTRCNFKEIHEYFLRKSEEKKQMTKEEKKKIKEANDAIT 282
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E+Y WAI+DG KEK+GNF+ EPPGLFRGRG+HPK GK+K+R+QP D+TINIGK P+P
Sbjct: 283 EEYGWAIMDGHKEKIGNFKTEPPGLFRGRGDHPKQGKIKRRVQPEDVTINIGKKAPVPPA 342
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WK V+HDN VTWLA W + I + KYV L +S LKG+ D KYE AR+LK
Sbjct: 343 P-EGHKWKSVQHDNKVTWLASWTENIQ-SQIKYVMLNPTSRLKGEKDLAKYETARRLKGR 400
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR Y D SR+ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+L+V +++
Sbjct: 401 IEEIRRNYESDLKSRETAVRQRAVALYFIDKLALRAGNEKDADEAADTVGCCSLRVEHIK 460
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+ + FDFLGKDSI+Y N V+V V+K + F GK+ DDLFD+L TA L
Sbjct: 461 LHEELNGKSDMVVFDFLGKDSIRYYNEVQVTHQVFKNLHIFMKGKETGDDLFDRLSTALL 520
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQ 810
N HL ELM GLTAKVFRTYNASITL L + T + D V KI Y RAN+ VA++CNHQ
Sbjct: 521 NKHLSELMEGLTAKVFRTYNASITLQEQLEELTKEDDTVNEKILSYNRANRAVAVLCNHQ 580
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
RT KT QMS L KI + + D + ++ + KK SD K ++ L E+
Sbjct: 581 RTAPKTFDTQMSNLQAKITAKEEAILDAKKEIKKMKKEL---KGTSDSKLQKKL--ESKV 635
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+++ + +++K+E KE+ K +ALGTSK+NYLDPRI+V+WCK+ VPIEK++N++
Sbjct: 636 KQLPKLEEQLKKLEIQATDKEENKEIALGTSKLNYLDPRISVSWCKKWGVPIEKVYNRTQ 695
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+++ D F F
Sbjct: 696 REKFAWAIEMADETFVF 712
>gi|391327312|ref|XP_003738147.1| PREDICTED: DNA topoisomerase 1-like [Metaseiulus occidentalis]
Length = 1011
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/558 (47%), Positives = 362/558 (64%), Gaps = 28/558 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL H G +F P Y LP V LY GK++ L+ E EE+AT +A MLD DY QK F
Sbjct: 469 KWNTLEHKGPVFAPDYEALPANVPFLYNGKKMKLSLEAEEIATFYARMLDHDYTQKESFN 528
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + + I +L+ CDF + ++ +E+ E++K S EEK K+ +
Sbjct: 529 SNFFQDWRKSMTAHEKETITDLKKCDFTHMANYFKEKTEERKNRSKEEKLEEKKMNEALQ 588
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y I+DG K+++GNF++EPPGLFRGRGEHPKMG+LK+R QP D+ INI K P+P+
Sbjct: 589 KEYGICIIDGHKQRIGNFKIEPPGLFRGRGEHPKMGRLKRRTQPEDVIINISKGAPVPK- 647
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + KY+ L SS LKG+ D +KYE AR LK
Sbjct: 648 PPPGHRWKEVRHDNTVTWLCCWTENVLGNN-KYIMLNPSSKLKGEKDFQKYETARLLKSC 706
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVE 696
+ IR Y D+ S++ RQ AVA Y IDKLALRAGNEKD D++ADTVGCC+L+V +V
Sbjct: 707 VKKIRENYQSDWKSKEMRVRQRAVALYFIDKLALRAGNEKDADEQADTVGCCSLRVEHVR 766
Query: 697 CI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
N ++FDFLGKDSI+Y N V VE V+K + F KK DDLFD+L+T+ L
Sbjct: 767 LHDEWEDKENVVEFDFLGKDSIRYQNWVPVEKRVFKNLRIFCENKKPGDDLFDRLNTSIL 826
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNH 809
N HL ELM GLTAKVFRTYNAS TL L+K T D D+++ K+ Y RAN+ VA++CNH
Sbjct: 827 NKHLNELMEGLTAKVFRTYNASKTLQEQLDKLT-DADMSIPEKLLAYNRANRAVAVLCNH 885
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEAL 869
QR V KT M L +KI++ + + D++ + AK+ D KR AL
Sbjct: 886 QRAVPKTFEKSMENLQKKIDEKQDQIADVKREFKDAKRSGDKATADKKQKR-----LHAL 940
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E ++ + + + +E+ K +ALGTSK+NYLDPRI+VAWCK+ +VPI+K++NK+
Sbjct: 941 EDQLKRLHVQ-------ATDREENKQIALGTSKLNYLDPRISVAWCKKWDVPIDKVYNKT 993
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+++ D +++F
Sbjct: 994 QRDKFRWAIEMADADYKF 1011
>gi|410953858|ref|XP_003983587.1| PREDICTED: DNA topoisomerase 1 [Felis catus]
Length = 1370
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 821 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 880
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 881 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 940
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 941 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 1000
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 1001 PT-GHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 1058
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 1059 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 1118
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 1119 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 1178
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 1179 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 1238
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ +A++
Sbjct: 1239 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKKVVESKKKAVQ 1297
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 1298 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 1353
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 1354 REKFAWAIDMADEDYEF 1370
>gi|401623691|gb|EJS41781.1| top1p [Saccharomyces arboricola H-6]
Length = 776
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/632 (44%), Positives = 386/632 (61%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW +L HNGVIFPPPY LP +K+ Y GK ++L + EEVA FA +L++D+ +
Sbjct: 147 DDTIKWASLKHNGVIFPPPYQPLPSHIKLYYDGKPIDLPLQAEEVAGFFAALLESDHAKN 206
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 207 PVFQKNFFNDFLQVLKESGGPLNDIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 266
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG KE+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 267 RLEREKFEEDYKFCELDGRKEQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 326
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PIP P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 327 KDAPIPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 384
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 385 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 444
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 445 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 504
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA K+ Y AN+ VAI+CN
Sbjct: 505 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKLLKYNAANRTVAILCN 564
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVL---KDL------------------- 838
HQRTV+K H+ + + +I++L + +L KDL
Sbjct: 565 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIGDLTKEDE 624
Query: 839 -----RVDLDRAKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAQTNAKIEKMERDMKTK 890
R+ +K + ++++D ++ K L PE L+ + + + K + E ++KT
Sbjct: 625 ATIHKRIIDREIEKCQRKFVRENDKRKFEKEELLPETQLKEWLEKVDEKKLEFENELKTG 684
Query: 891 E-DLKT----------------------------------VALGTSKINYLDPRITVAWC 915
E +LK+ V+LGTSKINY+DPR++V +C
Sbjct: 685 EIELKSTWSSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFC 744
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+ +VPIEKIF K+L KF WA++ D +RF
Sbjct: 745 KKFDVPIEKIFTKTLREKFKWAIESADENWRF 776
>gi|328723883|ref|XP_003247968.1| PREDICTED: DNA topoisomerase 1-like isoform 2 [Acyrthosiphon pisum]
Length = 677
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/558 (50%), Positives = 362/558 (64%), Gaps = 23/558 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y LP VK Y GK+V L+ EEVAT +A ML+ DY K F
Sbjct: 130 KWKFLEHKGPVFAPAYEPLPSNVKFYYNGKQVVLSELAEEVATFYAKMLEHDYTTKEVFN 189
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK + + +I +L C+FK + + ++ E++K MS EEKK +KEE +
Sbjct: 190 KNFLKDWRKTMTPKEKELITDLSLCNFKEMNVYFTKKSEERKAMSKEEKKKIKEENEALQ 249
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMG LKKR+ P D+ IN KD IP+
Sbjct: 250 KEYGFCTIDGHKEKIGNFKIEPPGLFRGRGEHPKMGMLKKRVVPEDVLINCSKDSNIPKP 309
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HD VTWLA W + + + KYV L SS LKG+ D +KYE AR+L
Sbjct: 310 P-PGHKWKEVRHDFGVTWLASWIENVQG-QVKYVMLNPSSKLKGEKDWQKYETARRLAKS 367
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y D+ SR+ RQ +VA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 368 IDKIRENYINDWKSREMHVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 427
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F KK +DDLFD+L+T+ LN
Sbjct: 428 HEEFNDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLKIFMENKKGSDDLFDRLNTSILN 487
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRT+NAS TL L K T D VA KI Y RAN+ VAI+CNHQR
Sbjct: 488 QHLHELMDGLTAKVFRTFNASWTLQQQLEKLTDPDVSVAEKILQYNRANRAVAILCNHQR 547
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA--PEAL 869
+ KTH M L EKI+ + +K+ + +AK+ +KD K L +AL
Sbjct: 548 AIPKTHEKSMGNLKEKIQTKRAAVKEAKEQYKQAKRD----VKDGSVHSKTQLEKRKKAL 603
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER + + K+E E D KE+ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 604 ER-LKEQLTKLEVQETD---KEENKTIALGTSKLNYLDPRISVAWCKKFNVPIEKIYNKT 659
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+D+ PE+ F
Sbjct: 660 QRDKFRWAIDMAGPEYVF 677
>gi|40889577|pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 43 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 102
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 103 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 162
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 163 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 222
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 223 P-PGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 280
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 281 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 340
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLG+DSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 341 LHPELDGQEYVVEFDFLGRDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 400
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 401 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 460
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 461 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 515
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N+LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 516 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQ 575
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 576 REKFAWAIDMADEDYEF 592
>gi|344279640|ref|XP_003411595.1| PREDICTED: DNA topoisomerase 1-like [Loxodonta africana]
Length = 1085
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 536 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 595
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +VI +L CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 596 KNFFKDWRKEMTNEEKNVITSLSKCDFAQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 655
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 656 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRILPEDIIINCSKDAKVPS- 714
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK+
Sbjct: 715 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKNC 773
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 774 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 833
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 834 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 893
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 894 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 953
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ +A++
Sbjct: 954 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKKVVESKKKAVQ 1012
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 1013 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGVPIEKIYNKTQ 1068
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 1069 REKFAWAIDMADEDFEF 1085
>gi|328723887|ref|XP_003247970.1| PREDICTED: DNA topoisomerase 1-like isoform 4 [Acyrthosiphon pisum]
Length = 734
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/558 (50%), Positives = 362/558 (64%), Gaps = 23/558 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y LP VK Y GK+V L+ EEVAT +A ML+ DY K F
Sbjct: 187 KWKFLEHKGPVFAPAYEPLPSNVKFYYNGKQVVLSELAEEVATFYAKMLEHDYTTKEVFN 246
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK + + +I +L C+FK + + ++ E++K MS EEKK +KEE +
Sbjct: 247 KNFLKDWRKTMTPKEKELITDLSLCNFKEMNVYFTKKSEERKAMSKEEKKKIKEENEALQ 306
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +DG KEK+GNF++EPPGLFRGRGEHPKMG LKKR+ P D+ IN KD IP+
Sbjct: 307 KEYGFCTIDGHKEKIGNFKIEPPGLFRGRGEHPKMGMLKKRVVPEDVLINCSKDSNIPKP 366
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HD VTWLA W + + + KYV L SS LKG+ D +KYE AR+L
Sbjct: 367 P-PGHKWKEVRHDFGVTWLASWIENVQG-QVKYVMLNPSSKLKGEKDWQKYETARRLAKS 424
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y D+ SR+ RQ +VA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 425 IDKIRENYINDWKSREMHVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 484
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K + F KK +DDLFD+L+T+ LN
Sbjct: 485 HEEFNDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLKIFMENKKGSDDLFDRLNTSILN 544
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRT+NAS TL L K T D VA KI Y RAN+ VAI+CNHQR
Sbjct: 545 QHLHELMDGLTAKVFRTFNASWTLQQQLEKLTDPDVSVAEKILQYNRANRAVAILCNHQR 604
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA--PEAL 869
+ KTH M L EKI+ + +K+ + +AK+ +KD K L +AL
Sbjct: 605 AIPKTHEKSMGNLKEKIQTKRAAVKEAKEQYKQAKRD----VKDGSVHSKTQLEKRKKAL 660
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER + + K+E E D KE+ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 661 ER-LKEQLTKLEVQETD---KEENKTIALGTSKLNYLDPRISVAWCKKFNVPIEKIYNKT 716
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+D+ PE+ F
Sbjct: 717 QRDKFRWAIDMAGPEYVF 734
>gi|426360896|ref|XP_004047664.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Gorilla
gorilla gorilla]
Length = 601
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/557 (47%), Positives = 350/557 (62%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y GK V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYDGKPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGNHPKMGMLKRRIMPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTISL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R M L KI+ K +V RA+ + + G K E
Sbjct: 470 RATPSMFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQGDGKSRSVLEKKR 524
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWC+R VP+EKI++K+
Sbjct: 525 RLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCRRFRVPVEKIYSKTQ 584
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 585 RERFAWALAMAGEDFEF 601
>gi|23200355|pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 15 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 74
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 75 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 134
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 135 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 194
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 195 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 252
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 253 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 312
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 313 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 372
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 373 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 432
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 433 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 487
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N+LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 488 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQ 547
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 548 REKFAWAIDMADEDYEF 564
>gi|156543660|ref|XP_001605104.1| PREDICTED: DNA topoisomerase 1-like [Nasonia vitripennis]
Length = 1019
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 269/556 (48%), Positives = 364/556 (65%), Gaps = 19/556 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y LP VK Y GKE+ LT + EEVAT +A ML+ DY K F
Sbjct: 472 KWHFLEHKGPVFAPEYEPLPPSVKFYYNGKEMKLTQDTEEVATFYARMLEHDYTTKQVFN 531
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF++DWR+++ ++ I +L+ C+F ++ + + E++K MS EEKKA+KE+ ++ +
Sbjct: 532 DNFFHDWREVMTESERAKITDLKKCNFTEMHKYFIMKSEERKAMSKEEKKAIKEKNDEIQ 591
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y +DG KEK+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD P+
Sbjct: 592 KEYGICTIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRLVPEDVLINCSKDSVHPKP 651
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKE++HD TVTWLA W + I + KYV L SS LKG+ D +KYE ARKL
Sbjct: 652 P-PGHKWKEIRHDPTVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAKS 709
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 710 VDKIRATYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIAL 769
Query: 698 IPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
K FDFLGKDSI+Y N V VE V+K++ F K D+LFD+L+T +N
Sbjct: 770 HEKKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKSLQLFMENKSPGDELFDRLNTTVMN 829
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HL ELM GLTAKVFRTYNAS TL L + T + VA KI Y RAN+ VAI+CNHQR
Sbjct: 830 KHLNELMDGLTAKVFRTYNASWTLQQQLEELTDPNSTVAEKILSYNRANRAVAILCNHQR 889
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K+H M L KI+ + + + + AK+ G K + E ++
Sbjct: 890 SVPKSHEKSMENLKAKIDAKREAIAEAEQIVKDAKRDA------KHGSVKEKVLYEKKKK 943
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931
++ + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+H+VPIEKI+NK+
Sbjct: 944 QLDRLKEQLMKLEVQATDREENKEIALGTSKLNYLDPRISVAWCKKHDVPIEKIYNKTQR 1003
Query: 932 AKFAWAMDV-DPEFRF 946
KF WA+D+ P++ F
Sbjct: 1004 DKFRWAIDMAGPDYVF 1019
>gi|163838768|ref|NP_001106268.1| DNA topoisomerase I, mitochondrial [Pan troglodytes]
gi|259533973|sp|A9Q1D5.1|TOP1M_PANTR RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|145309115|gb|ABP57788.1| mitochondrial topoisomerase I [Pan troglodytes]
gi|410218816|gb|JAA06627.1| topoisomerase (DNA) I, mitochondrial [Pan troglodytes]
gi|410252832|gb|JAA14383.1| topoisomerase (DNA) I, mitochondrial [Pan troglodytes]
Length = 601
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/557 (47%), Positives = 351/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+GK V L+ EEVAT + ML +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGKPVRLSVAAEEVATFYGRMLGHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 REFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRIMPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K D+LFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLTTTSL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R T M L KI+ K +V RA+ + + G K E
Sbjct: 470 RATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQGDGKSRSVLEKKR 524
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 525 RLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 584
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 585 RERFAWALAMAGEDFEF 601
>gi|473583|gb|AAB60380.1| DNA topoisomerase I, partial [Homo sapiens]
Length = 761
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 212 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 271
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 272 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 331
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPK G LK+RI P DI IN KD +P
Sbjct: 332 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKTGMLKRRIMPEDIIINCSKDAKVP-S 390
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 391 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 449
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 450 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 509
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 510 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 569
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 570 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 629
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 630 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 684
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK++YLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 685 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLSYLDPRITVAWCKKWGVPIEKIYNKTQ 744
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 745 REKFAWAIDMADEDYEF 761
>gi|348503053|ref|XP_003439081.1| PREDICTED: DNA topoisomerase 1-like isoform 2 [Oreochromis
niloticus]
Length = 769
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/557 (49%), Positives = 357/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ EEVAT FA MLD +Y K FR
Sbjct: 220 KWRFLEHKGPVFAPPYEPLPDKVKFYYDGKPMKLSASAEEVATFFAKMLDHEYTTKDIFR 279
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + VI +L CDF + ++ + Q E +KQMS EEK+ +KEE +
Sbjct: 280 KNFFKDWRKEMTSEEKSVITDLNKCDFSEMSEYFKAQSEARKQMSKEEKQKIKEENERLL 339
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++GNFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD P+
Sbjct: 340 QEYGFCIMDNHKERIGNFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKHPKP 399
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWLA W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 400 P-PGTKWKEVRHDNKVTWLASWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 457
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 458 VDRIRAQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 517
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 518 LYPKLDDQEYVVEFDFLGKDSIRYYNKIPVEKRVFKNLQLFLENKQPEDDLFDRLNTSIL 577
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L + T D + KI Y RAN+ VAI+CNHQ
Sbjct: 578 NKHLQELMDGLTAKVFRTYNASITLQQQLKELTCPDDSIPAKILSYNRANRAVAILCNHQ 637
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI++ + L R L AK D K A E
Sbjct: 638 RAPPKTFEKSMQNLQNKIDEKQTQLSAARKQLKAAKADHKASHDDKSKK-----AVEVKR 692
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K++ +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 693 KAVQRIEEQLMKLQVQATDREENKQIALGTSKLNYLDPRISVAWCKKFGIPIEKIYNKTQ 752
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 753 REKFAWAIDMADKDYEF 769
>gi|112734855|ref|NP_033434.2| DNA topoisomerase 1 [Mus musculus]
gi|158518540|sp|Q04750.2|TOP1_MOUSE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|123235350|emb|CAM20297.1| topoisomerase (DNA) I [Mus musculus]
gi|123239880|emb|CAM25349.1| topoisomerase (DNA) I [Mus musculus]
gi|148674342|gb|EDL06289.1| topoisomerase (DNA) I [Mus musculus]
gi|162319568|gb|AAI56380.1| Topoisomerase (DNA) I [synthetic construct]
gi|225000592|gb|AAI72687.1| Topoisomerase (DNA) I [synthetic construct]
Length = 767
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 690
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 691 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 750
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 751 REKFAWAIDMTDEDYEF 767
>gi|355563133|gb|EHH19695.1| DNA topoisomerase 1 [Macaca mulatta]
gi|355784486|gb|EHH65337.1| DNA topoisomerase 1 [Macaca fascicularis]
Length = 786
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/570 (48%), Positives = 361/570 (63%), Gaps = 31/570 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 223 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 282
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 283 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 342
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 343 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 401
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 402 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 460
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 461 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 520
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 521 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 580
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 581 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 640
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP---- 866
R KT M L KI+ K L D R DL A K +MKD+ K+ P
Sbjct: 641 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK---YVPGIVK 696
Query: 867 ---------EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+
Sbjct: 697 VGAGGEKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKK 756
Query: 918 HEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
VPIEKI+NK+ KFAWA+D+ D ++ F
Sbjct: 757 WGVPIEKIYNKTQREKFAWAIDMADEDYEF 786
>gi|345790055|ref|XP_534420.3| PREDICTED: DNA topoisomerase 1 [Canis lupus familiaris]
Length = 770
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 221 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 280
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 281 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 340
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 341 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 400
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 401 PT-GHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 458
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 459 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 518
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 519 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 578
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 579 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 638
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ E+ +
Sbjct: 639 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKK----VVESKK 693
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 694 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 753
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 754 REKFAWAIDMADEDYEF 770
>gi|348503051|ref|XP_003439080.1| PREDICTED: DNA topoisomerase 1-like isoform 1 [Oreochromis
niloticus]
Length = 759
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/557 (49%), Positives = 357/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ EEVAT FA MLD +Y K FR
Sbjct: 210 KWRFLEHKGPVFAPPYEPLPDKVKFYYDGKPMKLSASAEEVATFFAKMLDHEYTTKDIFR 269
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + VI +L CDF + ++ + Q E +KQMS EEK+ +KEE +
Sbjct: 270 KNFFKDWRKEMTSEEKSVITDLNKCDFSEMSEYFKAQSEARKQMSKEEKQKIKEENERLL 329
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++GNFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD P+
Sbjct: 330 QEYGFCIMDNHKERIGNFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKHPKP 389
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWLA W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 390 P-PGTKWKEVRHDNKVTWLASWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 447
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 448 VDRIRAQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 507
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 508 LYPKLDDQEYVVEFDFLGKDSIRYYNKIPVEKRVFKNLQLFLENKQPEDDLFDRLNTSIL 567
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L + T D + KI Y RAN+ VAI+CNHQ
Sbjct: 568 NKHLQELMDGLTAKVFRTYNASITLQQQLKELTCPDDSIPAKILSYNRANRAVAILCNHQ 627
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI++ + L R L AK D K A E
Sbjct: 628 RAPPKTFEKSMQNLQNKIDEKQTQLSAARKQLKAAKADHKASHDDKSKK-----AVEVKR 682
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K++ +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 683 KAVQRIEEQLMKLQVQATDREENKQIALGTSKLNYLDPRISVAWCKKFGIPIEKIYNKTQ 742
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 743 REKFAWAIDMADKDYEF 759
>gi|327278452|ref|XP_003223976.1| PREDICTED: DNA topoisomerase I, mitochondrial-like, partial [Anolis
carolinensis]
Length = 560
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 280/564 (49%), Positives = 357/564 (63%), Gaps = 33/564 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP+ VK Y GK + L+P EEVAT FA ML +Y +K FR
Sbjct: 11 KWLQLQHKGPYFAPPYERLPNCVKFYYNGKPMKLSPAAEEVATFFAKMLKHEYTKKAVFR 70
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+NDW K + G+ I +L+ CDF+ I+ + E+ E +K ++ EEKK LK E + +
Sbjct: 71 RNFFNDWTKEMTPGERRKITDLQKCDFREIHQYFVEKSEAQKALTKEEKKKLKAEAERIQ 130
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E+Y + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRIQP D+ IN +D IP C
Sbjct: 131 EEYGYCIIDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKKRIQPEDVIINCSRDSKIP-C 189
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + I KYV L SS LKG+ D +KYE AR LK
Sbjct: 190 PPRGHKWKEVRSDNTVTWLASWMENIQG-AIKYVMLNPSSKLKGEKDWQKYEVARHLKGV 248
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y D+ S+D +RQI+VA Y ID+LALRAGNEK+ E ADTVGCC+L+V ++
Sbjct: 249 VKKIRTRYRADWKSKDMKKRQISVALYFIDRLALRAGNEKEKGETADTVGCCSLRVEHIT 308
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P N ++FDFLGKD I+Y N V VE V+K + F K D LFD+L T L
Sbjct: 309 LHPRLGGKGNVVEFDFLGKDCIRYYNQVPVEKQVFKNLQLFMENKDPRDCLFDRLSTTSL 368
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L++ T + D VA K+ Y RAN+ VAI+CNHQ
Sbjct: 369 NKHLQDLMDGLTAKVFRTYNASITLQEQLDELTKEKDSVAAKLLSYNRANRAVAILCNHQ 428
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ L+D +L RA+ R +
Sbjct: 429 RATPKTFEKSMKNLQAKIDCKIDQLQDAEKELKRAQ------------AECRAKKDAKSK 476
Query: 871 RKMAQTNAKIEKMER-----DMKT--KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
+ + +IEK+E DM+ KE+ K +ALGTSK+NYLDPRI+VAWCKR +VPIE
Sbjct: 477 AALEKKKQRIEKIEEQLAKLDMQATDKEENKQIALGTSKLNYLDPRISVAWCKRFDVPIE 536
Query: 924 KIFNKSLLAKFAWAMDV-DPEFRF 946
KI+NK+ KFAWA+ + D +F F
Sbjct: 537 KIYNKTQREKFAWAIAMADEDFEF 560
>gi|324500963|gb|ADY40435.1| DNA topoisomerase 1 [Ascaris suum]
Length = 723
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 275/560 (49%), Positives = 358/560 (63%), Gaps = 35/560 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F P Y LP V Y G + L+PE EEVAT +A MLD +Y K F
Sbjct: 184 KWNSLSHKGPVFAPDYVPLPDDVVFKYDGNVIKLSPEAEEVATFYAKMLDHEYTTKDAFN 243
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + + I LE CDF+P+ Q+ E++K MS EEK+ LKE K +
Sbjct: 244 NNFFKDWRKTMTAAERETITELEKCDFRPMAAHFQKLSEERKAMSKEEKQKLKEAKEAEM 303
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y +A++DG ++K+GNFR+EPPGLFRGRG HPKMG+LKKR++P D+ IN KD IP
Sbjct: 304 KIYGYAVIDGHRQKIGNFRIEPPGLFRGRGGHPKMGRLKKRVRPEDVIINCSKDSEIP-V 362
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EK+E AR+LK
Sbjct: 363 PPEGHKWKEVRHDNTVTWLCSWTENVLGQN-KYIMLNPSSKIKGEKDYEKFETARRLKSR 421
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA YT DF S++ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+L+ +++
Sbjct: 422 VDDIRAVYTADFKSKEMRIRQRAVALYFIDKLALRAGNEKDVDEVADTVGCCSLRCEHIK 481
Query: 697 CIPPNKL-------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
KL +FDF GKDSI+Y N V VE V+ + F K DDLFD+LDT
Sbjct: 482 L--HEKLDDKDYVVEFDFPGKDSIRYYNKVPVEKRVFNNLKLFMENKDPGDDLFDRLDTT 539
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICN 808
LN HL+ LMPGLT KVFRTYNASITL L K T + G V + Y RAN++VAI+CN
Sbjct: 540 TLNQHLQSLMPGLTVKVFRTYNASITLQQQLEKLTKEGGSVQENLLSYNRANRQVAILCN 599
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEA 868
HQR V K+H M L+ KI+ K LK+ + +L++A+ G + A +
Sbjct: 600 HQRAVPKSHEKSMENLSAKIKAKKAELKEAKEELEKAR-----------GDAAKQKAKKK 648
Query: 869 LERKMAQT-NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
+ER Q KI++ ++D + K +AL TSK+NYLDPRI+VAWCK+H VP+EKIFN
Sbjct: 649 VERIKEQLKRLKIQRTDKD-----ENKQIALSTSKLNYLDPRISVAWCKKHGVPLEKIFN 703
Query: 928 KSLLAKFAWAMDV-DPEFRF 946
++ KF WA+D+ D +F F
Sbjct: 704 RTQREKFRWAIDMTDEDFVF 723
>gi|324501452|gb|ADY40648.1| DNA topoisomerase 1 [Ascaris suum]
Length = 723
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/558 (48%), Positives = 357/558 (63%), Gaps = 31/558 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F P Y LP V Y G + L+PE EEVAT +A MLD +Y K F
Sbjct: 184 KWNSLSHKGPVFAPDYVPLPDDVVFKYDGNVIKLSPEAEEVATFYAKMLDHEYTTKDAFN 243
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + + I LE CDF+P+ Q+ E++K MS EEK+ LKE K +
Sbjct: 244 NNFFKDWRKTMTAAERETITELEKCDFRPMAAHFQKLSEERKAMSKEEKQKLKEAKEAEM 303
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y +A++DG ++K+GNFR+EPPGLFRGRG HPKMG+LKKR++P D+ IN KD IP
Sbjct: 304 KIYGYAVIDGHRQKIGNFRIEPPGLFRGRGGHPKMGRLKKRVRPEDVIINCSKDSEIP-V 362
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EK+E AR+LK
Sbjct: 363 PPEGHKWKEVRHDNTVTWLCSWTENVLGQN-KYIMLNPSSKIKGEKDYEKFETARRLKSR 421
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA YT DF S++ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+L+ +++
Sbjct: 422 VDDIRAVYTADFKSKEMRIRQRAVALYFIDKLALRAGNEKDVDEVADTVGCCSLRCEHIK 481
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
++FDF GKDSI+Y N V VE V+ + F K DDLFD+LDT L
Sbjct: 482 LHEKLDDKDYVVEFDFPGKDSIRYYNKVPVEKRVFNNLKLFMENKDPGDDLFDRLDTTTL 541
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ LMPGLT KVFRTYNASITL L K T + G V + Y RAN++VAI+CNHQ
Sbjct: 542 NQHLQSLMPGLTVKVFRTYNASITLQQQLEKLTKEGGSVQENLLSYNRANRQVAILCNHQ 601
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R V K+H M L+ KI+ K LK+ + +L++A+ G + A + +E
Sbjct: 602 RAVPKSHEKSMENLSAKIKAKKAELKEAKEELEKAR-----------GDAAKQKAKKKVE 650
Query: 871 RKMAQT-NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
R Q KI++ ++D + K +AL TSK+NYLDPRI+VAWCK+H VP+EKIFN++
Sbjct: 651 RIKEQLKRLKIQRTDKD-----ENKQIALSTSKLNYLDPRISVAWCKKHGVPLEKIFNRT 705
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+D+ D +F F
Sbjct: 706 QREKFRWAIDMTDEDFVF 723
>gi|47604922|ref|NP_001001300.1| DNA topoisomerase I, mitochondrial [Gallus gallus]
gi|40841765|gb|AAR92363.1| mitochondrial topoisomerase I [Gallus gallus]
Length = 593
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/558 (49%), Positives = 367/558 (65%), Gaps = 21/558 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP V+ Y GK + L+ EE+AT +A MLD +Y K F+
Sbjct: 44 KWKQLEHKGPYFVPLYEPLPDDVQFYYDGKPLKLSLATEEIATFYAKMLDHEYTTKEIFQ 103
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+NDWRK + + +I+ L+ CDF+ I+ + ++ E +K +S EEK+ LKEE +K +
Sbjct: 104 NNFFNDWRKEMTPQEQEIIKQLDKCDFREIHKYFVDKNEARKALSKEEKQKLKEEADKIQ 163
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E+Y + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRI P D+ IN KD IPE
Sbjct: 164 EEYGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKKRIMPEDVIINCSKDSKIPEP 223
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P+ G WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D +K+E ARKLKD
Sbjct: 224 PV-GHKWKEVRFDNTVTWLASWTENIQ-NSLKYIMLNPSSKLKGEKDWQKFEVARKLKDV 281
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+H IRA Y D+ S++ +RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 282 VHKIRAQYQADWKSKEMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 341
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+ ++FDFLGKDSI+Y N V VE PV+K + F K DDLFD+L TA L
Sbjct: 342 LHSKLDGQEHVVEFDFLGKDSIRYYNKVSVEKPVFKNLQLFMKNKDPGDDLFDRLSTAVL 401
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L T D VA K+ Y RAN+ VAI+CNHQ
Sbjct: 402 NKHLQKLMNGLTAKVFRTYNASITLQEQLKALTNPEDSVAGKLLSYNRANRAVAILCNHQ 461
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKD-SDGKRKRNLAPEAL 869
R+ KT M L KI+ K L+ + +L+ A+ KD D K + N+ +
Sbjct: 462 RSTPKTFEKSMQNLQTKIDAKKEQLEKAQQELEEAEDE----FKDKKDAKAEANV--QKK 515
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
++ + + ++ K+ KE+ K +ALGTSK+NYLDPRI++AWCK+ VPIEKIFNK+
Sbjct: 516 KKLLERLKEQLAKLNVQATDKEENKQIALGTSKLNYLDPRISIAWCKKFGVPIEKIFNKT 575
Query: 930 LLAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 576 QREKFAWAIDMTDEDFEF 593
>gi|355765874|gb|EHH62465.1| DNA topoisomerase I, mitochondrial, partial [Macaca fascicularis]
Length = 570
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/557 (47%), Positives = 351/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV Y GK + L+ + EEVAT + MLD +Y K FR
Sbjct: 21 KWRQLEHKGPYFAPPYEPLPDGVCFFYDGKPMRLSVKAEEVATFYGRMLDHEYTTKEVFR 80
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE +
Sbjct: 81 KNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAENLQ 140
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IP+
Sbjct: 141 QEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPK- 199
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I KYV L S LKG+ +K+E AR+L+ +
Sbjct: 200 PPAGHQWKEVRSDNTVMWLAAWTESIQ-NSIKYVMLNPCSKLKGEKAWQKFETARRLRGF 258
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 259 VDEIRSQYQADWKSQEMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 318
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKDSI+Y N V VE PVYK + F K DD+FD+L T L
Sbjct: 319 LHPEADGCQHVVEFDFLGKDSIRYYNRVPVEKPVYKNLQLFMKNKDPQDDIFDRLTTTSL 378
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL ELM GLTAKVFRTYNAS+TL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 379 NKHLHELMDGLTAKVFRTYNASVTLQEQLRALTRAEDSIAAKILSYNRANRAVAILCNHQ 438
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R S T M L KI+ K + + R +L +K + DGK + L E
Sbjct: 439 RATSSTFEKSMQNLQTKIQVKKEQVAEARAEL---RKARAEHKAQGDGKSRSVL--EKKR 493
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ + KE+ K VAL TSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 494 RLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 553
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 554 RERFAWALAMAGEDFEF 570
>gi|27065157|pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22
Base Pair Dna Duplex
gi|27065161|pdb|1K4T|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Topotecan And Covalent Complex With A 22 Base
Pair Dna Duplex
gi|66360101|pdb|1SC7|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Mj-Ii-38 And Covalent Complex With A
22 Base Pair Dna Duplex
gi|67463659|pdb|1T8I|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Camptothecin And Covalent Complex With A 22 Base
Pair Dna Duplex
gi|71041604|pdb|1TL8|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Ai-Iii-52 And Covalent Complex With A
22 Base Pair Dna Duplex
Length = 592
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 43 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 102
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 103 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 162
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 163 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 222
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 223 P-PGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 280
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 281 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 340
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 341 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 400
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 401 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 460
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 461 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 515
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 516 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAWCKKWGVPIEKIYNKTQ 575
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 576 REKFAWAIDMADEDYEF 592
>gi|157838059|pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 591
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 42 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 101
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 102 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 162 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 221
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 222 P-PGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 280 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 339
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 340 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 399
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 400 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 459
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 460 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 514
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 515 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAWCKKWGVPIEKIYNKTQ 574
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 575 REKFAWAIDMADEDYEF 591
>gi|195478784|ref|XP_002100651.1| GE17178 [Drosophila yakuba]
gi|194188175|gb|EDX01759.1| GE17178 [Drosophila yakuba]
Length = 580
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 268/558 (48%), Positives = 354/558 (63%), Gaps = 37/558 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 47 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 106
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C F+ ++++ Q + EK+K + EEK K E
Sbjct: 107 NNFFKDFRKSMTSKEREIIKDFRKCGFQEMFNFFQAESEKRKAATKEEKLIKKNENEALM 166
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GK+ +P
Sbjct: 167 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKESKVP-S 225
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 226 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 284
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 285 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 344
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK DDLFD+L+T LN
Sbjct: 345 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKDGDDLFDRLNTQVLN 404
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 405 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 464
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEAL 869
+V K+H M L EKI+ + + + KKGK L
Sbjct: 465 SVPKSHEKSMENLKEKIKAKREAINKCEAEYHSRDEKKGK------------------QL 506
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKIFNK+
Sbjct: 507 ERLKDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKNDVPIEKIFNKT 562
Query: 930 LLAKFAWAMDV-DPEFRF 946
KF WA+ + D +RF
Sbjct: 563 QRTKFLWAVHMADENYRF 580
>gi|338719276|ref|XP_001500244.3| PREDICTED: DNA topoisomerase 1-like [Equus caballus]
Length = 732
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/557 (49%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 183 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 242
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I +L CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 243 KNFFKDWRKEMTNEEKNIITSLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 302
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 303 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 361
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 362 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 420
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 421 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 480
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 481 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 540
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 541 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 600
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ E+ +
Sbjct: 601 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKK----VVESKK 655
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 656 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 715
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 716 REKFAWAIDMADEDYEF 732
>gi|118384307|ref|XP_001025304.1| Eukaryotic DNA topoisomerase I, catalytic core family protein
[Tetrahymena thermophila]
gi|89307071|gb|EAS05059.1| Eukaryotic DNA topoisomerase I, catalytic core family protein
[Tetrahymena thermophila SB210]
Length = 713
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/579 (44%), Positives = 357/579 (61%), Gaps = 34/579 (5%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW L H+GV+FP + H V+ Y GK ++L QEE+AT ++ L TD+ KPK+REN
Sbjct: 135 KWKYLEHHGVLFPDYWQKHNVRPRYDGKPIDLNLLQEEMATYWSQTLGTDWEHKPKYREN 194
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYM 521
F + GK+ + + DF PI +EQKE +K S EEK K++K + + Y
Sbjct: 195 FSKQFLDTFGKDKGKYDFDKFDFTPIKIHLEEQKEIRKNRSKEEKNQEKQKKERLSDYYA 254
Query: 522 WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIP- 580
AI+DG +EKVG F +EPP LF+GRGEHPKMG +K RIQP + INI KD P+P+C +P
Sbjct: 255 GAILDGFREKVGQFMIEPPTLFKGRGEHPKMGMMKGRIQPEAVVINISKDAPVPKCSVPD 314
Query: 581 -----------------GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
G W E+ H VTWLA + D K+ KY+FL+A S LK ++
Sbjct: 315 CIHICRQIFNEFPKKQLGHGWSEIVHKQDVTWLASYKDDSVKKQHKYIFLSAESKLKAEN 374
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D++KYEKAR+LK+ I IR Y + S D RQ+ ATYLIDKLALR GNEK ++EAD
Sbjct: 375 DKKKYEKARRLKNLIGQIRENYERKLRSSDPVDRQLGTATYLIDKLALRVGNEKSEEEAD 434
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLF 743
TVGCC+L+V +++ I ++ FDFLGKDS++Y NTV+V V+K + F KK DDLF
Sbjct: 435 TVGCCSLRVEHIQVIEDTQIGFDFLGKDSMRYQNTVKVTEIVWKNMQSFIKNKKPGDDLF 494
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG----DVAVKIDVYQRA 799
D++D + LN +LK M GLTAKVFRTYNAS TL L+K +G D+ K++ Y A
Sbjct: 495 DRIDASSLNEYLKSQMEGLTAKVFRTYNASHTLQKELDKADEEGLDKMDLKDKLNFYDEA 554
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG-------KPPL 852
N+ VAI+CNHQ+TV K + ++ ++I K K+L L++ KK + L
Sbjct: 555 NRNVAILCNHQKTVGKNFDVMVGKMEQRINVYKDYEKELHTHLNKCKKNGVNAYEKEVIL 614
Query: 853 MKDSDGKRKRNL-----APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLD 907
+ DGK K + E ++ + + KI++ + ++KE K +ALGTSK NY D
Sbjct: 615 EEKDDGKHKMFVKKFPGTKEKIQEAIEKIKKKIDEEQNKKQSKEKNKEIALGTSKTNYND 674
Query: 908 PRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
PRI+V WCK+ EVP+EK+F K+L+AKF WAMD D E+ F
Sbjct: 675 PRISVVWCKKWEVPVEKVFPKTLIAKFVWAMDTDLEWSF 713
>gi|395829416|ref|XP_003787855.1| PREDICTED: DNA topoisomerase 1 [Otolemur garnettii]
Length = 1006
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/557 (50%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 457 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 516
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQM+ EEK +KEE K
Sbjct: 517 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMNKEEKLKIKEENEKLL 576
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 577 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS- 635
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 636 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYEIARRLKKC 694
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 695 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 754
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 755 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 814
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D + KI Y RAN+ VAI+CNHQ
Sbjct: 815 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTVPDENTPAKILSYNRANRAVAILCNHQ 874
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ +A++
Sbjct: 875 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKKVVESKKKAVQ 933
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + K+E + D +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 934 R-LEEQLMKLEVLATD---REENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 989
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 990 REKFAWAIDMADEDFEF 1006
>gi|341902465|gb|EGT58400.1| CBN-TOP-1 protein [Caenorhabditis brenneri]
Length = 738
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/567 (49%), Positives = 362/567 (63%), Gaps = 40/567 (7%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F P Y LP V Y G+ + L+ E EE AT +A +LD +Y F
Sbjct: 190 KWNSLQHMGPLFAPAYVPLPDSVHFKYAGERMKLSLEAEECATFYAGVLDHEYSTMKAFN 249
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
ENF DWRK++ + I +L+ CDF+ I + +EQ+E +K M+ EEK +KEEK +
Sbjct: 250 ENFMKDWRKVMTSKEREKITDLKKCDFRAIDLYQKEQREIRKAMTKEEKLKIKEEKEAEM 309
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y A++DG ++K+ NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD PIP+
Sbjct: 310 KIYGIAVIDGHRQKIANFRIEPPGVFRGRGGHPKMGFIKKRIMPEDVIINCGKDTPIPKP 369
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 370 P-AGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDYEKYETARRLKKK 427
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I +IRA YT+DF R+ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+V +++
Sbjct: 428 IAAIRAKYTEDFKDREMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 487
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
K+ +FDFLGKDSI+Y N V VE VYK +G+F K DDLFD
Sbjct: 488 LYDSAKIEETDKKEKEYVVEFDFLGKDSIRYFNRVAVEKRVYKNLGKFIENKNPGDDLFD 547
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDT+ LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 548 RLDTSTLNEHLRSLMDGLTVKVFRTYNASITLQEQLQKLTNPKDSVAAKILSYNRANRQV 607
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR+VSKTH M +L +KI+D K +K+ L A R
Sbjct: 608 AILCNHQRSVSKTHDQAMEKLEQKIKDKKKEVKEAEEALKHA----------------RG 651
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
E ++K + +++K++ K++ K +ALGTSK+NYLDPRITVAWCK H+VP+E
Sbjct: 652 AEKEKAQKKYDRLKEQLKKLKIARTDKDENKQIALGTSKLNYLDPRITVAWCKEHDVPLE 711
Query: 924 KIFNKSLLAKFAWAMDV----DPEFRF 946
K+F K+ KF WA+D+ D +F F
Sbjct: 712 KVFTKTHREKFRWAIDMTNSSDEKFVF 738
>gi|395505408|ref|XP_003757034.1| PREDICTED: DNA topoisomerase 1 [Sarcophilus harrisii]
Length = 1055
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/558 (49%), Positives = 360/558 (64%), Gaps = 21/558 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 506 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKDIFR 565
Query: 460 ENFWNDWRKLLG---KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
+NF+ DWRK + KN+ I +L CDF I + + Q E +KQMS EEK +KEE +
Sbjct: 566 KNFFKDWRKEMTNEEKNN-ITSLSKCDFNQISQYFKAQSEARKQMSKEEKLKIKEENERL 624
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 625 LKEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKVPP 684
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 685 -PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKK 742
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV 695
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 743 CVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHI 802
Query: 696 ECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+
Sbjct: 803 NLHPEMDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSI 862
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNH 809
LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNH
Sbjct: 863 LNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNH 922
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEAL 869
QR KT M L KI+ K L D R DL RA K + + KD K+ +A+
Sbjct: 923 QRAPPKTFEKSMLNLQTKIDAKKDQLADARRDLKRA-KAEAKVRKDVKSKKVVETKKKAV 981
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+R Q + K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 982 QRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPIEKIYNKT 1037
Query: 930 LLAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 1038 QREKFAWAIDMADKDYEF 1055
>gi|3170997|gb|AAC18301.1| DNA topoisomerase I [Pneumocystis carinii]
Length = 763
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/630 (45%), Positives = 385/630 (61%), Gaps = 82/630 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD-YM 453
GDG KW TL HNGV+FPPPY LP VKM YKG+ ++L PE EEVA F +L ++ Y+
Sbjct: 136 GDGTIKWKTLEHNGVLFPPPYEPLPSYVKMKYKGEPISLPPEAEEVAGFFGAILSSEQYV 195
Query: 454 QKPKFRENFWNDWRKLLGKNH---VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
+ P F++NF++D+++ K + + + E CDF P++++ +++KE+KK S EEKK +K
Sbjct: 196 KNPTFQKNFFHDFQETCKKTNAPVIPEKFEYCDFTPMFEYFEKKKEEKKNKSKEEKKKIK 255
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EEK+ EEKY + +DG KEKVGNFR+EPPGLFRGRG+HPK GKLK R+ P + INIGK
Sbjct: 256 EEKDALEEKYKYCFLDGRKEKVGNFRIEPPGLFRGRGDHPKTGKLKTRVVPEQVIINIGK 315
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IP P PG +WKEV+HDNTVTWLA WN+ +N KYVFL+A SSLKGQSD +KYEK
Sbjct: 316 DSVIP-SPPPGHNWKEVRHDNTVTWLATWNENVN-NNVKYVFLSAGSSLKGQSDLKKYEK 373
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
AR+LK YI +IR Y K+ + RQ A A YLID ALRAGNEK +DEADTVGCC+L
Sbjct: 374 ARELKLYIDNIRKQYRKELEDKLMEVRQRATAMYLIDLFALRAGNEKGEDEADTVGCCSL 433
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-QTGKKQNDDLFDKLDTA 749
+ ++ PPN + FDFLGKDSI+Y N V+V+ V+K + F ++ K + D LFD+L+T+
Sbjct: 434 RYEHISLSPPNTVVFDFLGKDSIRYYNEVQVDPQVFKNLKIFKRSPKTEGDMLFDRLNTS 493
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
KLN HL LMPGL+AKVFRT+NAS T+ L D ++ K+ Y RAN+ VAI+CNH
Sbjct: 494 KLNNHLTSLMPGLSAKVFRTHNASYTMSEQLKNTPKDASISDKVLAYNRANRMVAILCNH 553
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLR-----------------------VDLDRAK 846
QRT+SKTHSAQM R+ +KI LK LR +D D K
Sbjct: 554 QRTISKTHSAQMERIEDKILALKYQKIRLRKAILTLDPKLEKSRPDLSEAVSDIDEDWIK 613
Query: 847 KGKPPLMKDSDGKRKRNLAP--EAL---------ERKMAQTNAKIEKMERDMKTKED--- 892
+ + L++ K KR E L E ++ + KI +M+ + K + +
Sbjct: 614 EHQKVLIEKEYDKIKRKFQKDNEKLISQNETPMPESRLEKFLEKINEMKEEFKIENEKGR 673
Query: 893 ---------LKTVALGTSKI---------------------------NYLDPRITVAWCK 916
++T+ L KI NY+DPR+T AWC
Sbjct: 674 VESKTRGITIETLDLQIKKINERIHQMKALMIDKAQNKTTALGTSKINYIDPRLTYAWCA 733
Query: 917 RHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
++ V IE++F K+L FAWA ++ F
Sbjct: 734 KYGVNIERVFTKTLRETFAWAASTTADWEF 763
>gi|281202242|gb|EFA76447.1| DNA topoisomerase I [Polysphondylium pallidum PN500]
Length = 874
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/598 (46%), Positives = 380/598 (63%), Gaps = 55/598 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL H G +FPPPY+PHG+K+ Y G+ + LTPEQEEVAT +A ++TD+++K FR+N
Sbjct: 279 KWKTLSHAGPVFPPPYVPHGIKLYYDGEPLKLTPEQEEVATFYANYIETDHVKKEIFRKN 338
Query: 462 FWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
F+ND+R LL ++ + DF I+ + E+K+ +K + EEKK KE+K K +
Sbjct: 339 FFNDFRALLSSEQKKTVKTFDKLDFSRIHKFITERKDLRKNRTEEEKKQEKEDKEKIKAI 398
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPI 579
+ A +DG K+K+GN+ +EPPGLF GRGEHPK G LK RI PSD+TINIGK+ +P PI
Sbjct: 399 HGIATIDGHKQKIGNYTIEPPGLFLGRGEHPKTGMLKTRIYPSDVTINIGKNEKVPPSPI 458
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
G +WK+V HDNTVTWLAFW + IN FKYV+L +SS +KG +D +K+E AR LK+ I
Sbjct: 459 EGHNWKQVVHDNTVTWLAFWRENIN-NGFKYVWLGSSSKIKGLADMKKFETARGLKECID 517
Query: 640 SIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP 699
IR Y S D RQ+AVA YLIDKLALR GNEK +D+ADTVGCC+L+V +++ P
Sbjct: 518 DIRKGYRSKLKSEDLEERQLAVALYLIDKLALRVGNEKGEDQADTVGCCSLRVEHID-FP 576
Query: 700 ---PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-----QTGKKQNDDLFDKLDTAKL 751
PN + DFLGKDS++Y NTVE++ VYK + F + K ++D+LFD++ KL
Sbjct: 577 KEKPNTITLDFLGKDSMRYHNTVEIDATVYKHLFSFTKTEDKKKKSKSDNLFDQISVGKL 636
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICNHQ 810
N HLK M GL+AKVFRT+NASITL L K V K Y R N+EVAI+CNHQ
Sbjct: 637 NNHLKSQMDGLSAKVFRTFNASITLQQELAKMPPSLKTVDEKYLFYTRCNREVAILCNHQ 696
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM--------KDSDGKRKR 862
R KTH+A M ++ +KI++L+ + +L++ K K M K+ + KR +
Sbjct: 697 RAAPKTHAASMEKIGDKIQELEDLHDLCAFELNKVNKEKGKKMSKEKQEEIKEREKKRLK 756
Query: 863 NLAPEALE-----------------------RKMAQTNAKIE----KMERDMKTKEDLK- 894
+A++ RK ++ ++E K + +K +E L+
Sbjct: 757 EAKEKAIKSNKDKDKTDEDIKEEVETKFERSRKFPESEDRLEDKRKKFKEQIKKQELLRT 816
Query: 895 ------TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TVALGTSKINYLDPRIT AWCK+ VPIEKIF+K+L KF WA+DV+ ++ F
Sbjct: 817 GKDETSTVALGTSKINYLDPRITSAWCKKVGVPIEKIFSKTLRDKFPWAIDVEDDWEF 874
>gi|291409626|ref|XP_002721120.1| PREDICTED: DNA topoisomerase I [Oryctolagus cuniculus]
Length = 762
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK V L+P+ EEVAT FA MLD +Y FR
Sbjct: 213 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVVKLSPKAEEVATFFAKMLDHEYTTNEIFR 272
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQ+S EEK+ +KEE K
Sbjct: 273 KNFFKDWRKEMTNEEKNTITNLSKCDFTHMSQYFKAQSEARKQLSKEEKQKIKEENEKVL 332
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 333 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKVP-S 391
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 392 PPPGHKWKEVRHDNKVTWLVSWTQNIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 450
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 451 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 510
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 511 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 570
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 571 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 630
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 631 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 685
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ +PIEKI+NK+
Sbjct: 686 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGIPIEKIYNKTQ 745
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 746 REKFAWAIDMADEDYEF 762
>gi|28948850|pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex
Length = 563
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 14 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 73
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 74 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 133
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 134 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 193
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 194 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 251
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 252 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 311
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 312 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 371
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 372 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 431
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 432 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 486
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 487 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAWCKKWGVPIEKIYNKTQ 546
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 547 REKFAWAIDMADEDYEF 563
>gi|348690366|gb|EGZ30180.1| hypothetical protein PHYSODRAFT_358817 [Phytophthora sojae]
Length = 751
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 268/592 (45%), Positives = 373/592 (63%), Gaps = 55/592 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM-LDTDYMQKPK--- 457
+W TL HNGV+FPPPY PH V ++Y GK++ LTP QEE+A+ +A + D + PK
Sbjct: 168 QWRTLEHNGVMFPPPYKPHNVPLVYNGKDIELTPSQEEIASFYAAIPKDGPQLGNPKTAK 227
Query: 458 -FRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
F +NF+ D++K+LGK H ++N E CDF I + ++ +E+KK M+ EEK+ KE++ +
Sbjct: 228 IFNKNFFTDFKKVLGKQHEVKNFESCDFSKIATYLEKLREEKKSMTKEEKQPEKEKREME 287
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
+A VDG EKVGNFR+EPPGLFRGRGEHPK G LK+R+ P D+T+N+G +P
Sbjct: 288 VFTNGFAFVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPI 347
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
C +PG +WK+V H +TV+WLA+WN+ + KYVF AASSS KG+SD KYEKAR+LK+
Sbjct: 348 CNVPGHAWKQVIHRDTVSWLAYWNENVMGG-IKYVFFAASSSFKGKSDLAKYEKARRLKN 406
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 696
I IR YTK ++D +Q + A ++ID LALR GNEK +DEADTVGCC+L+V ++
Sbjct: 407 CIDKIRRDYTKGLRAKDMFTKQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMS 466
Query: 697 CIPPN-KLKFDFLGKDSIQYVNTVE------VELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
N L FLGKDS+ Y NTVE V VY+ + +F K +N+ +F +L
Sbjct: 467 FNDENCALTLSFLGKDSMPYNNTVELAQYGDVGKLVYQNLQKFCAKKDKNEKVFHELSVT 526
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-------GDVAVKIDVYQRANKE 802
+LN HL LMPGL+AKVFRT+NAS TL+ L +G+ +VA K+ +Y AN++
Sbjct: 527 ELNKHLSSLMPGLSAKVFRTFNASFTLEKELPGPSGNELDPQGKMEVAPKVVLYNDANRK 586
Query: 803 VAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR----------------------- 839
VAI+CNHQRT K+ + ++ +++ LK LKDL+
Sbjct: 587 VAILCNHQRTAPKSFDTTLDKMNAQLDQLKDQLKDLKQMQTLIAKGKSSSIKLKKEKKEK 646
Query: 840 --VDLDR---AKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLK 894
D D AKK + L +R + + + +K+ KI+ + ++ K D K
Sbjct: 647 PSGDKDEDALAKKAQAHLF-------QRTPSVDQVAKKIENWKKKIKALSLRLQDKTDNK 699
Query: 895 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VALGTSK+NY+DPRITVAWCKR+EVPI +F+K+L KF WAMDVDP++ F
Sbjct: 700 EVALGTSKLNYMDPRITVAWCKRNEVPISAVFSKTLREKFVWAMDVDPDWEF 751
>gi|281352816|gb|EFB28400.1| hypothetical protein PANDA_006987 [Ailuropoda melanoleuca]
Length = 560
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 11 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 70
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 71 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 130
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 131 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 190
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 191 PT-GHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 248
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 249 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 308
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 309 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 368
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 369 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 428
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ E+ +
Sbjct: 429 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKK----VVESKK 483
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 484 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 543
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 544 REKFAWAIDMADEDYEF 560
>gi|441432691|ref|YP_007354733.1| DNA topoisomerase 1b [Acanthamoeba polyphaga moumouvirus]
gi|440383771|gb|AGC02297.1| DNA topoisomerase 1b [Acanthamoeba polyphaga moumouvirus]
Length = 542
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/561 (46%), Positives = 358/561 (63%), Gaps = 38/561 (6%)
Query: 393 LPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
L +G +KKWTTL HNGV+FPP Y+ H + ++Y+G EV L + EE+AT++A +++TDY
Sbjct: 13 LQQTGGAKKKWTTLEHNGVLFPPEYVKHNIPVIYQGDEVVLDTDAEEIATLYAKLIETDY 72
Query: 453 MQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
++ F +NFW+DWRK+LG NHVIQNLE DF+PIY++ QKE+KK + +KE
Sbjct: 73 IKNRTFNKNFWSDWRKVLGPNHVIQNLEDVDFRPIYNYILRQKEEKKLDPT-----IKER 127
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
K +EEKY +A+VDG ++ VGNFR+EPPG+F GRG +PK G +KKRI P DI INIGK+
Sbjct: 128 KLAEEEKYKFALVDGKEQPVGNFRIEPPGIFLGRGCNPKSGHVKKRIYPEDIIINIGKNA 187
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
P+PE P+PG W ++ HD TV WLA + D I K KYV+L A S LK +SD K++ AR
Sbjct: 188 PVPE-PLPGHQWMDIIHDQTVEWLAAYKDTITGK-MKYVWLGAQSDLKAKSDLNKFDLAR 245
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLK I IR S D RQIA A Y ID ALR GNEK DDE DTVG +L++
Sbjct: 246 KLKRKIKQIRKENENALRSDDKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRI 305
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+V + N+++ DFLGKDS++Y T+E++ VY+ + +F GK D LFD + +N
Sbjct: 306 EHVHLLENNRVRLDFLGKDSVRYNRTLEIDTQVYQNLKEFMEGKSPKDQLFDLITPTDVN 365
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGML---NKGTGDGDVAVKIDV----YQRANKEVAI 805
+L+ M LTAKVFRTYNAS L NK D A KI++ + +AN +VA
Sbjct: 366 KYLQSFMKNLTAKVFRTYNASNLFQKELKKINKKYDSYDEADKINILLDDFNKANAKVAQ 425
Query: 806 ICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA 865
+CNHQ+ ++K+ + Q+ +L E I+ + L+ R RAKK P
Sbjct: 426 LCNHQKNITKSTNEQLKKLDESIKKAQDKLRKAR----RAKKKNP--------------- 466
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
+ +A+ ++K++ K +LK ++LGTSKINY+DPRITVA+ KRH +PI+KI
Sbjct: 467 -----QTIAKLENNVKKLKSKKALKTELKNISLGTSKINYIDPRITVAFMKRHNLPIDKI 521
Query: 926 FNKSLLAKFAWAMDVDPEFRF 946
F+K+L KF WA+DVD F F
Sbjct: 522 FSKTLQDKFKWALDVDENFVF 542
>gi|392594020|gb|EIW83345.1| hypothetical protein CONPUDRAFT_52328 [Coniophora puteana
RWD-64-598 SS2]
Length = 795
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 314/445 (70%), Gaps = 10/445 (2%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
SGDG++KW TL HNGVIFPPPY LP VKM YKGKEV LTPE EEVA + ML+TD+
Sbjct: 168 SGDGEEKWQTLEHNGVIFPPPYESLPSNVKMKYKGKEVVLTPEAEEVAGFYGAMLETDHA 227
Query: 454 QKPKFRENFWNDWRKLLG----KNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
Q F +NF+ D+ K+L +N + I E CDF+P++++ + +K KKK +S+ EKK
Sbjct: 228 QDATFNKNFFTDFLKVLADYPPRNGIKITKFEDCDFRPMFEYFESEKAKKKSLSTAEKKE 287
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
+K++K+ EEKY ++DG KEKVGNFRVEPPGLFRGRG+HPK G LK R++P DITINI
Sbjct: 288 IKKQKDALEEKYTSCVLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKFRVRPEDITINI 347
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
G VP P +PG+ WK+V HD TVTWLA W + +N +KYVFLAA SSLKGQSD K+
Sbjct: 348 GAGVPTPVPNMPGQ-WKQVVHDKTVTWLANWVENVN-GNYKYVFLAAGSSLKGQSDMAKF 405
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EKAR+LK ++ IR+ YT D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC
Sbjct: 406 EKARELKKHVDRIRSDYTADLKSKVMADRQRATAMYFIDRLALRAGNEKGEDEADTVGCC 465
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+L+ +V PN + FDFLGKDSI+Y N V V+ V+K I F+ K +D+LFD+++T
Sbjct: 466 SLRCEHVTLEAPNFIIFDFLGKDSIRYYNRVTVDQQVFKNIRLFKDNKDDSDNLFDRVNT 525
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIIC 807
+ LN HL M GLTAKVFRTYNASIT L++GT + V K++ Y AN+ VAI+C
Sbjct: 526 SLLNKHLASYMKGLTAKVFRTYNASITFQQQLDEGTPEEATVQEKLNAYNHANRMVAILC 585
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLK 832
NHQR+ KTH M ++ E++ K
Sbjct: 586 NHQRSAPKTHEQSMEKMRERLRGFK 610
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 861 KRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
KR+ PE LE + + KI+ + M +E K VALGTSKINYLDPRIT AWCK HEV
Sbjct: 710 KRDRPPEKLEEAVQKLGEKIKTFKLQMDDREAGKEVALGTSKINYLDPRITAAWCKTHEV 769
Query: 921 PIEKIFNKSLLAKFAWAMDVDPEFRF 946
PIEKIF+K+LL KF WAM+ D +++F
Sbjct: 770 PIEKIFSKTLLTKFPWAMEADDDWKF 795
>gi|355725604|gb|AES08609.1| topoisomerase I [Mustela putorius furo]
Length = 699
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/553 (49%), Positives = 356/553 (64%), Gaps = 18/553 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 151 KWKFLEHKGPVFAPPYEPLPETVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 210
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 211 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 270
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 271 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 330
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 331 PT-GHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 388
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 389 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 448
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 449 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 508
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 509 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 568
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K ++KD+ K+ E+ +
Sbjct: 569 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVLKDAKTKK----VVESKK 623
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 624 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 683
Query: 931 LAKFAWAMDVDPE 943
KFAWA+D+ E
Sbjct: 684 REKFAWAIDMADE 696
>gi|347971191|ref|XP_003436707.1| AGAP004078-PB [Anopheles gambiae str. PEST]
gi|333466629|gb|EGK96321.1| AGAP004078-PB [Anopheles gambiae str. PEST]
Length = 581
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 266/556 (47%), Positives = 358/556 (64%), Gaps = 30/556 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK +Y GKE+ L+ + EEVA +A ML+ DY K F
Sbjct: 38 KWKYLEHKGPVFAPPYDPLPSHVKFMYDGKEMKLSQDAEEVAGFYARMLEHDYTSKQAFN 97
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + I +LE C+F+P+ + E E+ + S EEK ALK +
Sbjct: 98 DNFFKDWRKTMTPHERERITDLEKCNFRPMAAYFAEIAEQNRNRSKEEKAALKAANEQLT 157
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y ++DG KEK+GNF++EPPGLFRGRGEHPKMG +K+R+ P D+ IN +D IP
Sbjct: 158 KEYGICVIDGHKEKIGNFKIEPPGLFRGRGEHPKMGLVKRRVMPEDVIINCSQDSKIP-S 216
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTV+WLA W + + + KY+ L SS LKG+ D +KYE AR+L +
Sbjct: 217 PPPGRRWKEVRHDNTVSWLASWVENVQG-QVKYIMLNPSSKLKGEKDWQKYETARRLLKH 275
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y ++ S++ RQ AVA Y IDKLALRAGNEKDDD+ADTVGCC+L+ ++
Sbjct: 276 IDKIRDTYRDEWKSKEMRIRQRAVAMYFIDKLALRAGNEKDDDQADTVGCCSLRYEHIAL 335
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDFLGKDSI+Y N VEVE V+K + F+ KK DDLFD+L+T+ +N
Sbjct: 336 HKELNGKENVVVFDFLGKDSIRYYNEVEVEKRVFKNLELFKENKKPGDDLFDRLNTSVVN 395
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQ 810
+LK LM GLTAKVFRT+NAS TL L + T D +++V K+ Y RAN+ VAI+CNHQ
Sbjct: 396 EYLKGLMDGLTAKVFRTFNASYTLQKQLEELT-DPNMSVPEKLLAYNRANRAVAILCNHQ 454
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R V KTH M L EKI RV ++ ++ + D K+ P A +
Sbjct: 455 RAVPKTHEKSMGNLKEKI----------RVKREQVEQCQKEF---KDLKKSNVRDPSAFD 501
Query: 871 RK---MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
+K + + +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKIFN
Sbjct: 502 KKSKQLERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKFGVPIEKIFN 561
Query: 928 KSLLAKFAWAMDVDPE 943
K+ KF WA+D+ E
Sbjct: 562 KTQRDKFRWAIDMADE 577
>gi|66360105|pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indolocarbazole Sa315f And Covalent Complex With A 22
Base Pair Dna Duplex
Length = 592
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 43 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 102
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 103 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 162
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 163 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 222
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 223 P-PGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 280
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 281 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 340
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 341 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 400
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 401 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 460
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 461 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 515
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK++ LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 516 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLSXLDPRITVAWCKKWGVPIEKIYNKTQ 575
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 576 REKFAWAIDMADEDYEF 592
>gi|345325267|ref|XP_001509816.2| PREDICTED: DNA topoisomerase 1 [Ornithorhynchus anatinus]
Length = 794
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 272/557 (48%), Positives = 357/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 245 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKDIFR 304
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I NL CDF + + + Q E +KQMS EEK+ +KEE +
Sbjct: 305 KNFFKDWRKEMTNEEKSNITNLSKCDFNHMSQYFKAQSEARKQMSKEEKQKIKEENEQLL 364
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NFR+EPPGLFRGRG HPKMG LK+RIQP DI IN KD +P
Sbjct: 365 KEYGFCVMDNHRERIANFRIEPPGLFRGRGNHPKMGMLKRRIQPEDIIINCSKDSKVPPP 424
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 425 P-PGHRWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 482
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 483 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 542
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 543 LHTEMDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 602
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNAS+TL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 603 NKHLQDLMEGLTAKVFRTYNASVTLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 662
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L + R DL A K + +D+ K+ +A++
Sbjct: 663 RAPPKTFEKSMMNLQTKIDAKKDQLANARRDLKSA-KADAKVQRDAKSKKVVETKKKAVQ 721
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 722 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPIEKIYNKTQ 777
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 778 REKFAWAIDMADEDYEF 794
>gi|409045205|gb|EKM54686.1| hypothetical protein PHACADRAFT_96904 [Phanerochaete carnosa
HHB-10118-sp]
Length = 865
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/612 (45%), Positives = 374/612 (61%), Gaps = 68/612 (11%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
+GDG +KW TL HNGV FPPPY LP +KM Y GK VNL+ EEVA +A +L+T++
Sbjct: 262 ANGDGSEKWQTLEHNGVYFPPPYEPLPANIKMKYNGKPVNLSSVAEEVAGFYAALLETEH 321
Query: 453 MQKPKFRENFWNDWRKLLGKNHV-----IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKK 507
+ F +NF+ D+ ++L K+ I E CDF+P+Y+ + K +KK MSS EKK
Sbjct: 322 AKDAIFNKNFFEDFLQVLKKDSPRDGTKITKFELCDFRPMYEHFELLKAQKKAMSSAEKK 381
Query: 508 ALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
K +K+ E + ++DG KEKVGNFRVEPPGLFRGRGEHPK G+LK R+ P D+T+N
Sbjct: 382 EAKSKKDALEAPFTHCVLDGRKEKVGNFRVEPPGLFRGRGEHPKKGRLKLRVHPEDVTVN 441
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
IG +PIP+ +PG +WK V HD TVTWLA W + +N +KYVFLAA SSLKGQSD +K
Sbjct: 442 IGGGIPIPKPNVPG-NWKAVVHDKTVTWLANWVENVN-GNYKYVFLAAGSSLKGQSDMQK 499
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 687
+EK+R+LK Y+ +R Y + + RQ+A Y ID LALRAGNEK +DEADTVGC
Sbjct: 500 FEKSRELKKYVADVRKWYNEKLKEKVMKERQLATCLYFIDVLALRAGNEKGEDEADTVGC 559
Query: 688 CTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
C+L+ ++ PPN L FDFLGKDSI+Y N V+V+ V+K I F+ + D LFD++D
Sbjct: 560 CSLRYEHITLEPPNFLIFDFLGKDSIRYYNRVQVDERVFKNIKIFKDQTSEGDMLFDRVD 619
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEV--- 803
TA +N L M GLTAKVFRTYNASIT L++GT + G V K++ Y AN+ +
Sbjct: 620 TADVNKKLSSFMKGLTAKVFRTYNASITFQQQLDQGTPEKGTVQEKLNAYNHANRMLRGF 679
Query: 804 ---------------------------------AIICNHQ-----RTVSKTH------SA 819
I H+ R + K +
Sbjct: 680 KYERMKLRHALFTVDSKFKKRKPYAEDESDLDDEAIAEHEEQWKARELEKAEKKFQKDNE 739
Query: 820 QMSRLTEKIE---DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR--KRNLAPEALERKMA 874
+++ EK++ LK +K++ + R K + GK KR+ E +E +
Sbjct: 740 KLAEQGEKLQPESALKDKIKEIESEFKRLNKER------GTGKHELKRDKPTEKIEEAIQ 793
Query: 875 QTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+ + KI+ + M+ +E K VALGTSKINYLDPRIT AWCK+H+VPIEKIF+K+LL KF
Sbjct: 794 KLDEKIKTFKLQMEDREAGKEVALGTSKINYLDPRITAAWCKKHDVPIEKIFSKTLLQKF 853
Query: 935 AWAMDVDPEFRF 946
WA++VDP+++F
Sbjct: 854 PWALEVDPDWKF 865
>gi|332263523|ref|XP_003280801.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Nomascus
leucogenys]
Length = 601
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/577 (45%), Positives = 356/577 (61%), Gaps = 19/577 (3%)
Query: 382 KNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEE 439
+ +Q T+ + + KW L H G F PPY LP GV+ Y GK V L+ EE
Sbjct: 32 RRTQKGSGTRWEEEKHEDRVKWRQLEHKGPYFAPPYEPLPDGVRFFYDGKPVRLSVAAEE 91
Query: 440 VATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEK 497
VAT + MLD +Y K F++NF+NDWRK + + VI++L+ CDF I+ + ++
Sbjct: 92 VATFYGRMLDHEYTTKEVFQKNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAA 151
Query: 498 KKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 557
+K ++ EEK+ LK E K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HP+MG LK+
Sbjct: 152 RKVLTREEKQKLKGEAEKLQQEFGYCILDGHREKIGNFKIEPPGLFRGRGDHPRMGMLKR 211
Query: 558 RIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS 617
RI P D+ IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S
Sbjct: 212 RITPEDVVINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCS 269
Query: 618 SLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK 677
LKG+ +K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK
Sbjct: 270 KLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEK 329
Query: 678 DDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
+D E ADTVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK +
Sbjct: 330 EDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQL 389
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVA 790
F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A
Sbjct: 390 FMENKDPQDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIA 449
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP 850
KI Y RAN+ VAI+CNHQR T M L KI+ K +V RA+ +
Sbjct: 450 AKILSYNRANRVVAILCNHQRVTPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRA 504
Query: 851 PLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRI 910
+ G K E R + + ++ + KE+ K VALGTSK+NYLDPRI
Sbjct: 505 RAEHKAQGDAKSRSVLEKKRRLLEKLQEQLAGLSVQATDKEENKQVALGTSKLNYLDPRI 564
Query: 911 TVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
++AWCKR VP+EKI++K+ +FAWA+ + E F F
Sbjct: 565 SIAWCKRFRVPVEKIYSKTQRERFAWALTMAGEDFEF 601
>gi|409080633|gb|EKM80993.1| hypothetical protein AGABI1DRAFT_119530 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 845
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 301/666 (45%), Positives = 403/666 (60%), Gaps = 44/666 (6%)
Query: 197 SEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLS---SRFPKSN 253
S+DD+PL+A+ ++ N N + A + + V D E SDD+ PL + P+
Sbjct: 9 SDDDRPLAAK---SAPNGNNRVNAPQTNG---HVKGPKDYEMSDDDQPLKPGKASPPRKR 62
Query: 254 AGTSGAKPIDSDEKKPLAS--------KVQQNGST-SRETQQKSSSVPVKRPLQKASSSG 304
+ + P+ SD+ PLAS K Q N S+E + Q+ SS
Sbjct: 63 KNGAISDPLSSDDDVPLASSPAKSTKLKKQNNKEGPSKERMANKKPPKKRAKRQRDSSGS 122
Query: 305 ASSAKKPKVS--DTSKEVKVKQVTVKVEKKADDDDHIPI------SQRMKNSAPSVKKS- 355
+ KP V+ K K+K+ + + DD PI SQ +K PS + +
Sbjct: 123 SEEDTKPPVAKKGIRKSRKIKEESAGYDSSDDDK---PIAKKAGKSQVIKEEQPSFEVAK 179
Query: 356 VTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPP 415
+ KA K +S + K KK + + + + P +GDG KWT L HNGVIFPP
Sbjct: 180 LKKRGKAMKEEGPAS-PMKGKGKKNEEEEEVFRWWEQDP-NGDGSMKWTKLEHNGVIFPP 237
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK+ Y GK V+L PE EEVA + ML+T + Q F +NF++DW+K++ KN
Sbjct: 238 PYEPLPSHVKLKYNGKPVDLPPEAEEVAGFYGAMLETPHAQDAVFNKNFFDDWKKVM-KN 296
Query: 474 HV------IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDG 527
H I + E CDF+P++++ + +K KKK M+SEEKKA K+ K+ E KY + ++DG
Sbjct: 297 HPARDGTKITSFELCDFRPLFEYFESEKAKKKAMTSEEKKAAKKAKDDMEAKYTFCLLDG 356
Query: 528 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEV 587
KEKVGNFRVEPPGLFRGRGEHP+ G LK R++P DIT+NIGKD PIP +PG +WK +
Sbjct: 357 RKEKVGNFRVEPPGLFRGRGEHPRKGALKSRVRPEDITLNIGKDAPIPIPNVPG-NWKAL 415
Query: 588 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTK 647
+HDNTVTWLA W + IN KYVFLAA S+LKGQSD +K+EKAR+LK+++ IR Y
Sbjct: 416 QHDNTVTWLANWTENINGNH-KYVFLAAGSTLKGQSDMQKFEKARELKNHVDRIRQNYQS 474
Query: 648 DFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 707
D S+ RQ A A Y IDKLALRAGNEK +DEADTVGCC+L+ +V PN + FDF
Sbjct: 475 DLKSKVMADRQRATAMYFIDKLALRAGNEKGEDEADTVGCCSLRCEHVTLEAPNSVIFDF 534
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K I F+ K +D LFD+++T+ LN HL M GLTAKVF
Sbjct: 535 LGKDSIRYYNKVPVEPQVFKNIRIFKENKNDDDSLFDRVNTSSLNKHLNNEMKGLTAKVF 594
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RT+NAS T +L++ D + K++ Y +AN+EVAI+CNHQRT KTH M R+
Sbjct: 595 RTFNASSTFQRLLDEHKFTDATLQEKLNAYNKANREVAILCNHQRTAPKTHDQSMERMRN 654
Query: 827 KIEDLK 832
K LK
Sbjct: 655 KYRALK 660
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 13/122 (10%)
Query: 828 IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR---KRNLAPEALERKMAQTNAKIEKME 884
+ED V++D D DR L K+ K+ KR E +E + + +++ +
Sbjct: 734 LEDRLAVIED---DFDR-------LAKERGTKKATLKREKTTEKIEEMLDKLTERVKAHK 783
Query: 885 RDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEF 944
M +++ K +ALGTSKINYLDPRIT AWC+ H VPIEKIF+K+L+ KF WAM+ P++
Sbjct: 784 LQMIDRDETKEIALGTSKINYLDPRITAAWCQTHSVPIEKIFSKTLVTKFPWAMEAAPDW 843
Query: 945 RF 946
+F
Sbjct: 844 KF 845
>gi|50513401|pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 16 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 75
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 76 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 135
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 136 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 195
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 196 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 253
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 254 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 313
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 314 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 373
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 374 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 433
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 434 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 488
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK++ LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 489 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLSXLDPRITVAWCKKWGVPIEKIYNKTQ 548
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 549 REKFAWAIDMADEDYEF 565
>gi|9954905|pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 359/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 14 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 73
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 74 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 133
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 134 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 193
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 194 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 251
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 252 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 311
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 312 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 371
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 372 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 431
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 432 IAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 486
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N+LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 487 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQ 546
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 547 REKFAWAIDMADEDYEF 563
>gi|443706334|gb|ELU02442.1| hypothetical protein CAPTEDRAFT_173543 [Capitella teleta]
Length = 757
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 267/560 (47%), Positives = 357/560 (63%), Gaps = 28/560 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP V+ Y GK V L+PE EEVA + M+D DY + F
Sbjct: 209 KWRYLQHMGPYFAPEYEPLPDHVRFYYDGKPVKLSPEAEEVAVFYGRMIDHDYTTQEVFN 268
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK++ + ++++L C+F I D+ + + E++K MS E K +K++ +
Sbjct: 269 DNFLKDWRKVMNSKEKELLRDLRKCNFNEINDYFKLKSEERKAMSKEGKLEIKKQNEEIV 328
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D ++K+GNFR+EPPGLFRGRG+HPK G LKKRI P D+ IN KD PIP+
Sbjct: 329 KQYGFCVIDHHRQKIGNFRIEPPGLFRGRGDHPKRGMLKKRIMPEDVIINCSKDSPIPK- 387
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + I KYV L A+S LKG+ D KYE ARKL
Sbjct: 388 PPPGHKWKEVRHDNTVTWLCSWTENIQG-SIKYVMLNAASKLKGEKDFNKYETARKLYKC 446
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+D ADTVGCC+++V +++
Sbjct: 447 VDKIRAQYREDWKSKEMRIRQRAVAMYFIDKLALRAGNEKDEDTADTVGCCSIRVEHIKL 506
Query: 698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
++FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA LN
Sbjct: 507 HEKLDDKEYVVEFDFLGKDSIRYYNRVAVEKRVFKNLQIFMENKSPGDDLFDRLNTAILN 566
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQR 811
HL+ LM GLTAKVFRT+NAS TL L T + D V K+ Y RAN+ VAI+CNHQR
Sbjct: 567 KHLQSLMEGLTAKVFRTFNASRTLQEQLKLLTDEDDNVPGKMLSYNRANRAVAILCNHQR 626
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEA-LE 870
V K S QM L KI+ + +KD + D +K +D K R++ + +E
Sbjct: 627 AVPKNFSQQMENLQGKIDAKRDAVKDAKRDYKASK---------ADYKASRSITNQKNVE 677
Query: 871 RK---MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
+K + + + K+E K++ K +ALGTSK+NYLDPRI+VAWCK+ +VPIEKI+N
Sbjct: 678 KKKKALDRAQEMLHKLEVQQTDKDENKEIALGTSKLNYLDPRISVAWCKKFDVPIEKIYN 737
Query: 928 KSLLAKFAWAMDV---DPEF 944
K+ KFAWA+D+ D EF
Sbjct: 738 KTQREKFAWAIDMAEEDYEF 757
>gi|449495298|ref|XP_002187114.2| PREDICTED: DNA topoisomerase I, mitochondrial [Taeniopygia guttata]
Length = 548
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/553 (49%), Positives = 362/553 (65%), Gaps = 19/553 (3%)
Query: 406 LVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFW 463
L H G F PPY LP V+ Y GK + L+ EE+AT +A ML+ +Y K F+ NF+
Sbjct: 3 LEHRGPYFVPPYEPLPEDVQFYYDGKPLKLSLATEEIATFYAKMLNHEYTTKEIFQNNFF 62
Query: 464 NDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYM 521
+DWRK + + +I+ L+ CDF I+ + E+ E +K + EEK+ LKEE +K +E+Y
Sbjct: 63 HDWRKEMTSEEQEIIKELDKCDFGEIHRYFVEKNEARKGLPKEEKQKLKEEADKIQEEYG 122
Query: 522 WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPG 581
+ I+DG +EK+GNF+ EPPGLFRGRGEHPKMG LKKRI P D+ IN KD IPE P G
Sbjct: 123 YCILDGHREKIGNFKTEPPGLFRGRGEHPKMGMLKKRIMPEDVIINCSKDSKIPEPP-EG 181
Query: 582 ESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSI 641
WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D EKYE AR+LKD +H+I
Sbjct: 182 HKWKEVRFDNTVTWLASWTENIQ-NTLKYIMLNPSSKLKGEKDWEKYEVARRLKDVVHTI 240
Query: 642 RAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIP- 699
RA Y KD+ S++ +RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++ P
Sbjct: 241 RAQYRKDWKSKEIKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLHPQ 300
Query: 700 ----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHL 755
+ ++FDFLGKDSI+Y N V VE PV+K + F K +DLFD L T LN HL
Sbjct: 301 LDGQEHVVEFDFLGKDSIRYYNKVSVEKPVFKNLQLFMKNKDPTEDLFDHLSTTFLNKHL 360
Query: 756 KELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVS 814
+ LM GLTAKVFRTYNASITL L T D +A K+ Y RAN+ VAI+CNHQR++
Sbjct: 361 QRLMDGLTAKVFRTYNASITLQEQLKALTNPEDNIAGKLLSYNRANRAVAILCNHQRSIP 420
Query: 815 KTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMA 874
KT + M L EKI+ K +++ + + KK + D K + N+ + + +
Sbjct: 421 KTFAKSMQVLQEKIDAKKKQVEEAQ---EEVKKAEDEFKDTKDAKAELNVEKKK--KLLK 475
Query: 875 QTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+ ++ KM KE+ K +ALGTSK+NYLDPRITVAWCK+ +PIE+I+NK+ KF
Sbjct: 476 RLEEQLAKMNIQATDKEENKQIALGTSKLNYLDPRITVAWCKKFGIPIERIYNKTQREKF 535
Query: 935 AWAMDVDPE-FRF 946
AWA+D+ E F F
Sbjct: 536 AWAIDMAGEDFEF 548
>gi|302306949|ref|NP_983396.2| ACL008Cp [Ashbya gossypii ATCC 10895]
gi|299788764|gb|AAS51220.2| ACL008Cp [Ashbya gossypii ATCC 10895]
gi|374106602|gb|AEY95511.1| FACL008Cp [Ashbya gossypii FDAG1]
Length = 732
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/632 (44%), Positives = 382/632 (60%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGV+FPP Y LP V++ Y GK V L E EEVA FA +L +D+ Q
Sbjct: 103 DDSVKWVTLRHNGVMFPPEYTPLPSHVRLYYGGKAVELPAEAEEVAGFFAALLQSDHAQN 162
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ D+ +L K N + IQ CDF ++ + Q+QK++KKQ+SS EKK L
Sbjct: 163 PVFQKNFFEDFLSVLNKHGGARNGIDIQEFSKCDFSKMHAYIQQQKDQKKQLSSHEKKLL 222
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K+EK+KQEE Y + +DG KE+VGNF++EPP LFRGRG HPK GKLK+R+QP D+ +N+
Sbjct: 223 KQEKDKQEEPYKFCYLDGRKEQVGNFKIEPPDLFRGRGAHPKTGKLKRRVQPEDVVLNLD 282
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PIPE P G W E++HDNTV WL W + I+ FKYV LAA+SSLKG SD +K+E
Sbjct: 283 KDAPIPEPP-AGHKWGEIRHDNTVQWLCMWRENIS-NSFKYVRLAANSSLKGMSDFKKFE 340
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
K+R+LK+YI IRA Y K+ S+ RQIAVATYLID ALRAG EK +DEADTVGCC+
Sbjct: 341 KSRELKNYIDIIRADYRKNLKSKVMLDRQIAVATYLIDVFALRAGGEKSEDEADTVGCCS 400
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ ++ PPN + FDFLGKDSI+Y VEV+ V+K + F+ K+ LFD+LD
Sbjct: 401 LRYEHISLKPPNTVVFDFLGKDSIRYYQEVEVDKQVFKNLSIFKRPPKEPGHQLFDRLDP 460
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G V K+ Y AN+ VAI+CN
Sbjct: 461 SILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGSVTEKMVRYNAANRAVAILCN 520
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAK-KGKPPLMKD--------- 855
HQRTV ++H+ M + TEKIE+ K K + LD ++ K P K+
Sbjct: 521 HQRTVGRSHAQSMQKATEKIEEYQWQKIRYKKAILQLDESELKANPKFFKEINDLTKEEQ 580
Query: 856 -SDGKRKRNLAPEALERKMAQTNAK----------------------------IEKMERD 886
S KR E ++K A+ N K +E++E
Sbjct: 581 MSIHKRVLEREREKYQKKFARENEKRKFEGEELLPESQLESWLADVEEMGKEYVEELETG 640
Query: 887 M------------------KTKEDLKTVAL-------------GTSKINYLDPRITVAWC 915
+ K ++ ++T ++ TSKI+Y+DPR++VA+C
Sbjct: 641 LVTVKPTLQSVEKLKAQIDKLEQRIRTTSIQMKDKEDNSTVALSTSKISYIDPRLSVAFC 700
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VP+EK+F K+L KF WA++ D +RF
Sbjct: 701 KKYDVPLEKVFTKTLREKFKWAIESADENWRF 732
>gi|255727468|ref|XP_002548660.1| DNA topoisomerase I [Candida tropicalis MYA-3404]
gi|240134584|gb|EER34139.1| DNA topoisomerase I [Candida tropicalis MYA-3404]
Length = 777
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/630 (43%), Positives = 377/630 (59%), Gaps = 84/630 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
+G KW TL HNGVIFPP Y LP VK+ Y GK VNL PE EEVA + ML+TD+ +
Sbjct: 151 EGGIKWETLEHNGVIFPPEYEPLPSHVKLYYDGKPVNLPPEAEEVAGFYGAMLETDHAKN 210
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NF+ND+ ++L G I+ E DF +Y ++++Q+E+KK +S +EKK LKE
Sbjct: 211 PVFQKNFFNDFLEVLKECGGCGVEIKEFEKMDFSKMYAYYEQQREEKKALSRDEKKRLKE 270
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
E++K EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+GKD
Sbjct: 271 ERDKFEEPYKTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVAPEQVTLNLGKD 330
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
+PE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E A
Sbjct: 331 AKVPEPP-AGHQWGEIRHDNEVTWLAMWKENISDST-KYVRFANNSSIKGQSDFKKFETA 388
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R+L++++ IR YTK S RQ+A A YLID ALRAG EK DDEADTVGCC+L+
Sbjct: 389 RRLRNHVDEIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGDDEADTVGCCSLR 448
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
+V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 449 YEHVTLKPPNKVVFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKAPKQPGDDLFDRINPSL 508
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNHQ
Sbjct: 509 VNKQLQNYMKGLTAKVFRTYNASKTMQDQIDLIENEGTVAEKVVKFNAANRTVAILCNHQ 568
Query: 811 RTVSKTHSAQMSRLTEKIEDL--------------------------------------- 831
RTVSK HS + ++ +K+++L
Sbjct: 569 RTVSKNHSNTVQKINDKLKELMWQKIRLKKMILVLEPKLKKKDAKYFEEIDDLIKEDIEH 628
Query: 832 ----------KGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT----- 876
+ V K D ++ K PL+ D K K + E LE++ Q
Sbjct: 629 IHHTIINRQREQVQKKFERDNEKLKLEGKPLLTKKDIKEKMDKITE-LEKEYKQERKTGK 687
Query: 877 -----NAKIEKMERDMKT--------------KEDLKTVALGTSKINYLDPRITVAWCKR 917
NA +EK++ ++T KED V+LGTSK+NY+DPR+TV + K+
Sbjct: 688 PVVPKNATVEKLKGQIETLENRILTTSFQLKDKEDNSEVSLGTSKMNYIDPRLTVMFSKK 747
Query: 918 HEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 748 FDVPIEKLFTKTLRDKFKWAIESTDENWRF 777
>gi|426197547|gb|EKV47474.1| hypothetical protein AGABI2DRAFT_185414 [Agaricus bisporus var.
bisporus H97]
Length = 845
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 300/666 (45%), Positives = 403/666 (60%), Gaps = 44/666 (6%)
Query: 197 SEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLS---SRFPKSN 253
S+DD+PL+A+ ++ N N + A + + V D E SDD+ PL + P+
Sbjct: 9 SDDDRPLAAK---SAPNGNNRVNAPQTNG---HVKGPEDYEMSDDDQPLKPGKASPPRKR 62
Query: 254 AGTSGAKPIDSDEKKPLAS--------KVQQNGST-SRETQQKSSSVPVKRPLQKASSSG 304
+ + P+ SD+ PLAS K Q N S+E + Q+ SS
Sbjct: 63 KNGAISDPLSSDDDVPLASSPAKSTKLKKQNNKEGPSKERMANKKPPKKRAKRQRDSSGS 122
Query: 305 ASSAKKPKVS--DTSKEVKVKQVTVKVEKKADDDDHIPI------SQRMKNSAPSVKKS- 355
+ KP V+ K K+K+ + + DD PI SQ +K P+ + +
Sbjct: 123 SEEDTKPPVAKKGIRKSRKIKEESAGYDSSDDDK---PIAKKAGKSQVIKEEQPNFEVAK 179
Query: 356 VTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPP 415
+ KA K +S + K KK + + + + P +GDG KWT L HNGVIFPP
Sbjct: 180 LKKRGKAMKEEGPAS-PMKGKGKKNEEEEEVFRWWEQDP-NGDGSMKWTKLEHNGVIFPP 237
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK+ Y GK V+L PE EEVA + ML+T + Q F +NF++DW+K++ KN
Sbjct: 238 PYEPLPSHVKLKYNGKPVDLPPEAEEVAGFYGAMLETPHAQDAVFNKNFFDDWKKVM-KN 296
Query: 474 HV------IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDG 527
H I + E CDF+P++++ + +K KKK M+SEEKKA K+ K+ E KY + ++DG
Sbjct: 297 HPARDGTKITSFELCDFRPLFEYFESEKAKKKAMTSEEKKAAKKAKDDMEAKYTFCLLDG 356
Query: 528 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEV 587
KEKVGNFRVEPPGLFRGRGEHP+ G LK R++P DIT+NIGKD PIP +PG +WK +
Sbjct: 357 RKEKVGNFRVEPPGLFRGRGEHPRKGALKSRVRPEDITLNIGKDAPIPIPNVPG-NWKAL 415
Query: 588 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTK 647
+HDNTVTWLA W + IN KYVFLAA S+LKGQSD +K+EKAR+LK+++ IR Y
Sbjct: 416 QHDNTVTWLANWTENINGNH-KYVFLAAGSTLKGQSDMQKFEKARELKNHVDRIRQNYQS 474
Query: 648 DFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 707
D S+ RQ A A Y IDKLALRAGNEK +DEADTVGCC+L+ +V PN + FDF
Sbjct: 475 DLKSKVMADRQRATAMYFIDKLALRAGNEKGEDEADTVGCCSLRCEHVTLEAPNSVIFDF 534
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K I F+ K +D LFD+++T+ LN HL M GLTAKVF
Sbjct: 535 LGKDSIRYYNKVPVEPQVFKNIRIFKENKNDDDSLFDRVNTSSLNKHLNNEMKGLTAKVF 594
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RT+NAS T +L++ D + K++ Y +AN+EVAI+CNHQRT KTH M R+
Sbjct: 595 RTFNASSTFQRLLDEHKFTDATLQEKLNAYNKANREVAILCNHQRTAPKTHDQSMERMRN 654
Query: 827 KIEDLK 832
K LK
Sbjct: 655 KYRALK 660
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 13/122 (10%)
Query: 828 IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR---KRNLAPEALERKMAQTNAKIEKME 884
+ED GV++D D DR L K+ K+ KR E +E + + +++ +
Sbjct: 734 LEDRLGVIED---DFDR-------LAKERGTKKATLKREKTTEKIEEMLDKLTERVKAHK 783
Query: 885 RDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEF 944
M +++ K +ALGTSKINYLDPRIT AWC+ H VPIEKIF+K+L+ KF WAM+ P++
Sbjct: 784 LQMIDRDETKEIALGTSKINYLDPRITAAWCQTHNVPIEKIFSKTLVTKFPWAMEAAPDW 843
Query: 945 RF 946
+F
Sbjct: 844 KF 845
>gi|402879307|ref|XP_003903287.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Papio
anubis]
Length = 600
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/557 (47%), Positives = 350/557 (62%), Gaps = 20/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP+GV Y GK + L+ + EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPNGVCFFYDGKPMRLSVKAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF+ EPPGLFRGRG HPKMG LK+R+ P D+ IN +D IP+
Sbjct: 172 QEFGYCILDGHREKIGNFKTEPPGLFRGRGNHPKMGMLKRRVMPEDVVINCSRD-SIPK- 229
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I KYV L S LKG+ +K+E AR+L+ +
Sbjct: 230 PPAGHQWKEVRSDNTVMWLAAWTESIQ-NSIKYVMLNPCSKLKGEKAWQKFETARRLRGF 288
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 289 VDEIRSQYRADWKSQEMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 348
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKDSI+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 349 LHPEADGCQHVVEFDFLGKDSIRYNNRVPVEKPVYKNLELFMKNKDPQDDLFDRLTTTSL 408
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL ELM GLTAKVFRTYNAS+TL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 409 NKHLHELMDGLTAKVFRTYNASVTLQEQLRALTRAEDSIAAKILSYNRANRAVAILCNHQ 468
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R S T M L KI+ K + + R +L +A+ + G K E
Sbjct: 469 RATSSTFEKSMQNLQTKIQVKKEQVAEARAELRKARAE-----HKAQGDDKSRSVLEKKR 523
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ + KE+ K VAL TSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 524 RLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 583
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 584 RERFAWALAMAGEDFEF 600
>gi|449486172|ref|XP_002190040.2| PREDICTED: DNA topoisomerase 1 [Taeniopygia guttata]
Length = 766
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/557 (48%), Positives = 355/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVAT FA MLD +Y K FR
Sbjct: 217 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSTKAEEVATFFAKMLDHEYTTKEIFR 276
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L CDF + + + Q E +KQMS EEK+ +KEE +
Sbjct: 277 KNFFKDWRKEMTSEEKSTITSLSKCDFTHMSQYFKAQSEARKQMSKEEKQKIKEENERLL 336
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD IP
Sbjct: 337 KEYGYCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKIP-A 395
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 396 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 454
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 455 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 514
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 515 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 574
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 575 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTNPDDNIPAKILSYNRANRAVAILCNHQ 634
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R +L A K + +D K+ +A++
Sbjct: 635 RAPPKTFEKSMMNLQSKIDAKKEQLADARRELKSA-KADAKVRRDEKSKKTVESKKKAVQ 693
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 694 R----IEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPIEKIYNKTQ 749
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 750 REKFAWAIDMAEEDYEF 766
>gi|351715322|gb|EHB18241.1| DNA topoisomerase 1, partial [Heterocephalus glaber]
Length = 749
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/557 (49%), Positives = 355/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EE+AT FA MLD +Y K FR
Sbjct: 200 KWKFLEHKGPVFAPPYEPLPDSVKFYYDGKVMKLSSKAEEIATFFAKMLDHEYTTKEIFR 259
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 260 KNFFKDWRKEMTNEEKSTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 319
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 320 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRILPEDIIINCSKDAKVP-S 378
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 379 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 437
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 438 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 497
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 498 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 557
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 558 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 617
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 618 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 672
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 673 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 732
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 733 REKFAWAIDMADEDYEF 749
>gi|19113001|ref|NP_596209.1| DNA topoisomerase I [Schizosaccharomyces pombe 972h-]
gi|13432252|sp|P07799.2|TOP1_SCHPO RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|6723928|emb|CAB66458.1| DNA topoisomerase I [Schizosaccharomyces pombe]
Length = 814
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 379/629 (60%), Gaps = 84/629 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D +KWTTL HNGVIF PPY LP VK++Y G VNL PE EEVA +A ML+TD+ +
Sbjct: 190 DDTQKWTTLEHNGVIFAPPYEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKN 249
Query: 456 PKFRENFWNDWRKLLGK---NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
P F++NF+ D+ K+ + NH I+ CDF ++ ++++E+KK M E+KKA+K++
Sbjct: 250 PVFQDNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQK 309
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
K+++EEKY W I+DG KEKVGNFR+EPPGLFRGRG HPK G LK+R+ P ITINIG+ V
Sbjct: 310 KDEEEEKYKWCILDGRKEKVGNFRIEPPGLFRGRGSHPKTGSLKRRVYPEQITINIGEGV 369
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
P+PE P+PG W EVKHDNTVTWLA W++ IN KYVFLAA SSLKGQSD +KYEK+R
Sbjct: 370 PVPE-PLPGHQWAEVKHDNTVTWLATWHENIN-NNVKYVFLAAGSSLKGQSDLKKYEKSR 427
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLKDYI IR Y KD S RQ A YLID ALRAGNEK +DEADTVGCC+L+
Sbjct: 428 KLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGCCSLRY 487
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKL 751
+V PP + FDFLGKDSI+Y N VEV+ V+K + F+ KK+ D +FD+L T L
Sbjct: 488 EHVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKRPPKKEGDLIFDRLSTNSL 547
Query: 752 NAHLKELMPGLTAKVFRTYNASITL--------------DGMLNKGTGDGDVAV------ 791
N +L LM GL+AKVFRTYNAS T+ D +L + VA+
Sbjct: 548 NKYLTSLMDGLSAKVFRTYNASYTMAEELKKMPKNLTLADKILFYNRANRTVAILCNHQR 607
Query: 792 -----------------KIDVYQRAN---------------------KEVAI----ICNH 809
K YQR KE I I H
Sbjct: 608 SVTKNHDVQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEGITDSWIVKH 667
Query: 810 QRTV----SKTHSAQMSRLTEKI--EDLKGVL--KDLRVDLDRAKKGKPPLMKDSDGKRK 861
T+ + + R EK+ ED K VL +L V L A + K L D++ K K
Sbjct: 668 HETLYELEKEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKAADELKKAL--DAELKSK 725
Query: 862 R----NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
+ + E LE+++ + N +I M M K++ KT ALGTSKINY+DPR+T ++ KR
Sbjct: 726 KVDPGRSSMEQLEKRLNKLNERINVMRTQMIDKDENKTTALGTSKINYIDPRLTYSFSKR 785
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
+VPIEK+F+K++ KF WA D P++++
Sbjct: 786 EDVPIEKLFSKTIRDKFNWAADTPPDWKW 814
>gi|334311332|ref|XP_001381657.2| PREDICTED: DNA topoisomerase 1-like [Monodelphis domestica]
Length = 924
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 375 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKDIFR 434
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF I + + Q E +KQMS EEK +KEE +
Sbjct: 435 KNFFKDWRKEMTNEEKNSITNLSKCDFNQISQYFKAQSEARKQMSKEEKLKIKEENERLL 494
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 495 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPP- 553
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 554 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 612
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 613 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 672
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 673 LHPEMDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 732
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 733 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 792
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K + + KD K+ +A++
Sbjct: 793 RAPPKTFEKSMMNLQTKIDAKKDQLADARRDLKSA-KAEAKVRKDVKTKKVVETKKKAVQ 851
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R Q + K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 852 RLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPIEKIYNKTQ 907
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 908 REKFAWAIDMADKDYEF 924
>gi|449284003|gb|EMC90586.1| DNA topoisomerase 1, partial [Columba livia]
Length = 747
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/557 (48%), Positives = 355/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVAT FA MLD +Y K FR
Sbjct: 198 KWKFLEHKGPVFAPPYEPLPENVKFFYDGKVMKLSTKAEEVATFFAKMLDHEYTTKEIFR 257
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L CDF + + + Q E +KQMS EEK+ +KEE +
Sbjct: 258 KNFFKDWRKEMTSEEKSTITSLSKCDFTHMSQYFKAQTEARKQMSKEEKQKIKEENERLL 317
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD IP
Sbjct: 318 KEYGYCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKIP-S 376
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 377 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 435
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 436 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 495
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 496 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 555
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 556 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTNPDDNIPAKILSYNRANRAVAILCNHQ 615
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R +L A K + +D K+ +A++
Sbjct: 616 RAPPKTFEKSMMNLQTKIDAKKEQLADARRELKSA-KADAKVRRDEKSKKTVESKKKAVQ 674
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 675 R----IEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPIEKIYNKTQ 730
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 731 REKFAWAIDMAEEDYEF 747
>gi|71989170|ref|NP_001021578.1| Protein TOP-1, isoform b [Caenorhabditis elegans]
gi|3878631|emb|CAB07639.1| Protein TOP-1, isoform b [Caenorhabditis elegans]
Length = 734
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/567 (49%), Positives = 360/567 (63%), Gaps = 40/567 (7%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F
Sbjct: 186 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFN 245
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK++ + I +L+ CDF+ I + +EQ+E +K M+ EEK +KEEK +
Sbjct: 246 KNFMKDWRKVMTVEERERIHDLKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEV 305
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y AI+DG ++KV NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD IP+
Sbjct: 306 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 365
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 366 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDFEKYETARRLKKK 423
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+V +++
Sbjct: 424 IGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 483
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD
Sbjct: 484 LFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFD 543
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 544 RLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQV 603
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR VSK M +L +KI+D K +K+ L A R
Sbjct: 604 AILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSA----------------RG 647
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+E
Sbjct: 648 AEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPLE 707
Query: 924 KIFNKSLLAKFAWAMDV----DPEFRF 946
K+F K+ KF WA+D+ D E+ F
Sbjct: 708 KVFTKTHREKFRWAIDMTNSSDEEYVF 734
>gi|402879309|ref|XP_003903288.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Papio
anubis]
Length = 614
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 263/557 (47%), Positives = 350/557 (62%), Gaps = 20/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP+GV Y GK + L+ + EEVAT + MLD +Y K FR
Sbjct: 66 KWRQLEHKGPYFAPPYEPLPNGVCFFYDGKPMRLSVKAEEVATFYGRMLDHEYTTKEVFR 125
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE K +
Sbjct: 126 KNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAEKLQ 185
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF+ EPPGLFRGRG HPKMG LK+R+ P D+ IN +D IP+
Sbjct: 186 QEFGYCILDGHREKIGNFKTEPPGLFRGRGNHPKMGMLKRRVMPEDVVINCSRD-SIPK- 243
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I KYV L S LKG+ +K+E AR+L+ +
Sbjct: 244 PPAGHQWKEVRSDNTVMWLAAWTESIQ-NSIKYVMLNPCSKLKGEKAWQKFETARRLRGF 302
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 303 VDEIRSQYRADWKSQEMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 362
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKDSI+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 363 LHPEADGCQHVVEFDFLGKDSIRYNNRVPVEKPVYKNLELFMKNKDPQDDLFDRLTTTSL 422
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL ELM GLTAKVFRTYNAS+TL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 423 NKHLHELMDGLTAKVFRTYNASVTLQEQLRALTRAEDSIAAKILSYNRANRAVAILCNHQ 482
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R S T M L KI+ K + + R +L +A+ + G K E
Sbjct: 483 RATSSTFEKSMQNLQTKIQVKKEQVAEARAELRKARAE-----HKAQGDDKSRSVLEKKR 537
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ + KE+ K VAL TSK+NYLDPRI++AWCKR VP+EKI++K+
Sbjct: 538 RLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQ 597
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA+ + E F F
Sbjct: 598 RERFAWALAMAGEDFEF 614
>gi|66363066|ref|XP_628499.1| eukaryotic DNA topoisomerase I [Cryptosporidium parvum Iowa II]
gi|46229815|gb|EAK90633.1| eukaryotic DNA topoisomerase I [Cryptosporidium parvum Iowa II]
Length = 653
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/643 (42%), Positives = 392/643 (60%), Gaps = 55/643 (8%)
Query: 358 NTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY 417
N A AT S S++NK K KK + + P + +W L H GV+F PPY
Sbjct: 12 NMASATDSSLSNTNKRRKVMKKTEMDYEPLNKWWERPPKEELGIQWEYLEHQGVMFAPPY 71
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL---GKNH 474
H V + Y G+ + L PE EE+A+ ++VM DT++ QK KF N + + K H
Sbjct: 72 KVHNVPLEYNGERIQLPPEAEEIASYWSVMKDTEWAQKEKFSNNVRKAFMNSIPVGDKLH 131
Query: 475 VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGN 534
E C+F I + +++KE KK +S EEK+ K+ + QE +++A+VD +KEKVGN
Sbjct: 132 NNLEWEKCNFDIIKQYFEDEKEAKKNLSKEEKELQKKCRGDQESPFVYALVDWIKEKVGN 191
Query: 535 FRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP--IPGESWKEVKHDNT 592
FR+EPPGLF+GRGEHPK G LK+RI P D+T+NI +D P+P+ P + G +WK++ HDNT
Sbjct: 192 FRIEPPGLFKGRGEHPKSGMLKRRIFPEDVTLNIAEDAPVPKVPNSMKGHAWKDIFHDNT 251
Query: 593 VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSR 652
VTWLA++ D IN +FKY+FL+ASS KG SD KYEKARKLKD+I +IR Y K S
Sbjct: 252 VTWLAYYRDSIN-NQFKYIFLSASSGFKGMSDYNKYEKARKLKDHIDAIRDDYRKKMTSG 310
Query: 653 DGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNK-LKFDFLGK 710
D T+RQ+ ATYLID LALR G EKD D+EADTVGCC+L+V ++ K + DFLGK
Sbjct: 311 DITQRQLGTATYLIDFLALRVGGEKDTDEEADTVGCCSLRVEHITFNQQEKSITLDFLGK 370
Query: 711 DSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTY 770
DSI+Y NTV ++ + + F K + +++FD+++ + LN +LK +MP L+AKVFRT+
Sbjct: 371 DSIRYYNTVVIDPSAFNNLTIFCRNKDKMENVFDQINMSSLNQYLKSIMPELSAKVFRTF 430
Query: 771 NASITLDGMLNKGTGDGDVAV-----------------------KIDV---------YQR 798
NASITL+ L+K + V ++D+ Y
Sbjct: 431 NASITLERELSKISAKSAVKSEKRTKMELESYLKDELNLSNFNNEVDITNVNDILRFYND 490
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK--------P 850
AN+EVAI+CNHQR+V K H + M ++ ++ ++L+ LK L KK P
Sbjct: 491 ANREVAILCNHQRSVPKQHESSMEKMIKQQQELEEDLKICEAFLKILKKNNKSVTISDLP 550
Query: 851 PLMKDS--DGKRKR-----NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 903
L + +GK+++ N + + +++K+ +KI + +K K+D KTVAL TSKI
Sbjct: 551 KLSTEVSFNGKQRKYPINLNSSLDVVQKKIDSIKSKISNLYLKIKIKDDNKTVALNTSKI 610
Query: 904 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
NY+DPRI+VA+CK++++PI+KIFN+SL KF WAM +F F
Sbjct: 611 NYMDPRISVAFCKKYDLPIDKIFNRSLRTKFPWAMYTRSDFSF 653
>gi|50513398|pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 358/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 16 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 75
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 76 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 135
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGL RGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 136 KEYGFCIMDNHKERIANFKIEPPGLSRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 195
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 196 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 253
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 254 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 313
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 314 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 373
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 374 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 433
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
+ KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 434 QAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 488
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+N LDPRITVAWCK+ VPIEKI+NK+
Sbjct: 489 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAWCKKWGVPIEKIYNKTQ 548
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 549 REKFAWAIDMADEDYEF 565
>gi|358372024|dbj|GAA88629.1| topoisomerase I [Aspergillus kawachii IFO 4308]
Length = 889
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 285/669 (42%), Positives = 403/669 (60%), Gaps = 37/669 (5%)
Query: 222 KADAAISEVNVKTDPEDSDDEVPL--SSRFPKSNAGTSGAKPIDSDEKKPLASKVQQ--N 277
K+ +++ + +PE S+D+ PL +SR K + + ++D+ PLA ++
Sbjct: 67 KSRSSVGQRKSYAEPESSEDDQPLRLTSRQSKRRRTSVKHEDPETDDDVPLALNGRKLPK 126
Query: 278 GSTSRETQQKSSSVPVKRPL-------QKASSSGASSAKKPKVSDTSKEVKVKQVTVKVE 330
S + ++ S VP++R L Q+ + A + +K T+K K+ V+
Sbjct: 127 ASETAIGEESDSDVPIERKLASQKKKIQQKAEKDAKATRKQAPPKTTKATATKRQANGVK 186
Query: 331 KKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKST 390
K+ +D + + K + S K ++ + K ++ SS+ + KK + +
Sbjct: 187 KEPEDVKPSTVKKTAKPTKASEKAALPSHVK--RAASSAKSTPVKKEESEEAEDAEEEEY 244
Query: 391 KML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAV 446
+ P GDG KWTTL HNGV+FPPPY LP VKM Y G V L P+ EEVA F
Sbjct: 245 RWWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKMKYDGVPVTLHPDAEEVAGFFGG 304
Query: 447 MLD-TDYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQK 495
ML+ T +++ P F++NF+ D+R +L K N V I++ CDF+PI+ ++ Q+
Sbjct: 305 MLNATQHVENPTFQKNFFMDFRDILKKTGGAKDPKGNKVDIKDFHKCDFQPIFAYYDNQR 364
Query: 496 EKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 555
++KK + EKK LK EK+ QE YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++
Sbjct: 365 QEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGRV 424
Query: 556 KKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
K R+QP ITINIGKD P+P P G WKEVKHD TWLA W + IN +KYV LAA
Sbjct: 425 KSRVQPEQITINIGKDAPVPPPP-EGHKWKEVKHDQEGTWLAMWQENIN-GNYKYVMLAA 482
Query: 616 SSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGN 675
+S +KGQSD +K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGN
Sbjct: 483 NSDVKGQSDYKKFEKARELKHHIDRIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGN 542
Query: 676 EKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
EK +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F+
Sbjct: 543 EKGEDEAETVGCCSLKYENVTLKPPNKVVFDFLGKDSIRFYDEVEVDTQVFKNLKIFKKA 602
Query: 736 -KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKID 794
KK+ D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L G++A K+
Sbjct: 603 PKKEGDEIFDRLTTSALNKHLSTYMQGLTAKVFRTYNASHTMSTLLKDMKATGNIAEKVK 662
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKG 848
Y AN+ VAI+CNH+RTV+ +H+ QM +++E+I+ L + LK +DL+ + KKG
Sbjct: 663 AYNDANRRVAILCNHKRTVAASHANQMEKMSERIKGLRYQRWRLKQQMLDLEPSLKKKKG 722
Query: 849 KPPLMKDSD 857
D D
Sbjct: 723 AKYFEMDED 731
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
LE + + +IE ME + KE+ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K
Sbjct: 811 LEAAITKLEQRIETMELQAQDKEENKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSK 870
Query: 929 SLLAKFAWAM-DVDPEFRF 946
SL KF WA+ V+ ++ F
Sbjct: 871 SLREKFEWAIKSVEEDWEF 889
>gi|209876474|ref|XP_002139679.1| DNA topoisomerase I [Cryptosporidium muris RN66]
gi|209555285|gb|EEA05330.1| DNA topoisomerase I, putative [Cryptosporidium muris RN66]
Length = 660
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 265/618 (42%), Positives = 379/618 (61%), Gaps = 66/618 (10%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
P + +W L HNGV+F PPY H V ++Y GKE+ L E EE+AT +A +LDT++
Sbjct: 44 PAKDESSIQWDYLEHNGVMFAPPYQAHKVPLIYDGKEIELPNESEEIATYWAQILDTEWS 103
Query: 454 QKPKFRENFWNDWRKLLGKNHVIQ---NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
K +F +N + + K H++ N + CDF I + E+KE+KK M+ E+K+ K
Sbjct: 104 SKERFVKNAKEAFISSIPKGHILYKNCNWDKCDFSLIKEHFDEEKERKKNMNKEQKEQQK 163
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
KN+ E Y++A+VD +KEKVGNFR+EPPGLFRGRGEHPK G LKKRI ++T+N+ +
Sbjct: 164 RIKNESESPYIYALVDWIKEKVGNFRIEPPGLFRGRGEHPKSGMLKKRIFSEEVTLNVAE 223
Query: 571 DVPIP--ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
D P+P + I G +WK+V HD+ VTWLA++ D IN +FKY+FL+ASS KG SD KY
Sbjct: 224 DAPVPKVDSSIIGHAWKDVFHDSNVTWLAYYKDSIN-NQFKYIFLSASSGFKGMSDYNKY 282
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGC 687
EKARKLK++IH+IR Y K S D RQ+ ATYLID LALR G EKD ++EADTVGC
Sbjct: 283 EKARKLKNFIHAIRDDYNKKMKSNDIIHRQLGTATYLIDFLALRVGGEKDIEEEADTVGC 342
Query: 688 CTLKVGNVECIPPNK-LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKL 746
C+L+V ++ +K + DFLGKDSI+Y NTV ++ + + F K++++++FD++
Sbjct: 343 CSLRVEHISFNEDSKSITLDFLGKDSIRYFNTVCIDAAAFYNLMLFCKNKEKHENVFDQI 402
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGML----------------NKGTGDGDVA 790
+ + LN +LK +MP L+AKVFRT+NASITL+ L N +
Sbjct: 403 NMSSLNQYLKSIMPELSAKVFRTFNASITLERELLKLRSLTNFSNQTTKSNLDLVKNEFG 462
Query: 791 VKID--------------------------VYQRANKEVAIICNHQRTVSKTHSAQMSRL 824
+K D Y AN+EVAI+CNHQR++ K H + M +L
Sbjct: 463 IKSDDIKQDDLLRSNLNNIVDITNVNDILRFYNDANREVAILCNHQRSIPKQHESSMEKL 522
Query: 825 TEKIEDLKGVLKDLRVDLDRAKK--GKPPLMKD---------SDGKRKR---NLA--PEA 868
++ +L+ LK V L KK K +KD +GK ++ NL+ E
Sbjct: 523 LKQQLELQEDLKICEVYLRLLKKNPNKSITLKDLPKLSTETSFNGKPRKFPINLSSNSEI 582
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
+++K+ K+ +E +K K+D KTV+L TSK+NY+DPRI+VA+CK++E+PI+K+FN+
Sbjct: 583 IQKKLDSIKTKLSNLELKIKIKDDNKTVSLNTSKLNYMDPRISVAFCKKYELPIDKVFNR 642
Query: 929 SLLAKFAWAMDVDPEFRF 946
SL KF WAM +F F
Sbjct: 643 SLRTKFPWAMYTRSDFSF 660
>gi|17508321|ref|NP_493337.1| Protein TOP-1, isoform a [Caenorhabditis elegans]
gi|74957937|sp|O17966.1|TOP1_CAEEL RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; Short=topoI
gi|3878632|emb|CAB07640.1| Protein TOP-1, isoform a [Caenorhabditis elegans]
Length = 806
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/567 (49%), Positives = 360/567 (63%), Gaps = 40/567 (7%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F
Sbjct: 258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFN 317
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK++ + I +L+ CDF+ I + +EQ+E +K M+ EEK +KEEK +
Sbjct: 318 KNFMKDWRKVMTVEERERIHDLKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEV 377
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y AI+DG ++KV NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD IP+
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 438 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDFEKYETARRLKKK 495
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+V +++
Sbjct: 496 IGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 555
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD
Sbjct: 556 LFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFD 615
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 616 RLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQV 675
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR VSK M +L +KI+D K +K+ L A R
Sbjct: 676 AILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSA----------------RG 719
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+E
Sbjct: 720 AEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPLE 779
Query: 924 KIFNKSLLAKFAWAMDV----DPEFRF 946
K+F K+ KF WA+D+ D E+ F
Sbjct: 780 KVFTKTHREKFRWAIDMTNSSDEEYVF 806
>gi|1934847|emb|CAA65537.1| DNA topoisomerase [Caenorhabditis elegans]
Length = 806
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/567 (49%), Positives = 360/567 (63%), Gaps = 40/567 (7%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F
Sbjct: 258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFN 317
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK++ + I +L+ CDF+ I + +EQ+E +K M+ EEK +KEEK +
Sbjct: 318 KNFMKDWRKVMTVEERERIHDLKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEV 377
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y AI+DG ++KV NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD IP+
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 438 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDFEKYETARRLKKK 495
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+V +++
Sbjct: 496 IGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 555
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD
Sbjct: 556 LFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFD 615
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 616 RLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQV 675
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR VSK M +L +KI+D K +K+ L A R
Sbjct: 676 AILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSA----------------RG 719
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+E
Sbjct: 720 AEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPLE 779
Query: 924 KIFNKSLLAKFAWAMDV----DPEFRF 946
K+F K+ KF WA+D+ D E+ F
Sbjct: 780 KVFTKTHREKFRWAIDMTNSSDEEYVF 806
>gi|355698261|gb|EHH28809.1| DNA topoisomerase I, mitochondrial [Macaca mulatta]
Length = 625
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 266/575 (46%), Positives = 351/575 (61%), Gaps = 37/575 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV Y GK + L+ + EEVAT + MLD +Y K FR
Sbjct: 58 KWRQLEHKGPYFAPPYEPLPDGVCFFYDGKPMRLSVKAEEVATFYGRMLDHEYTTKEVFR 117
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE K +
Sbjct: 118 KNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAEKLQ 177
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IP
Sbjct: 178 QEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPR- 236
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I KYV L S LKG+ +K+E AR+L+ +
Sbjct: 237 PPAGHQWKEVRSDNTVMWLAAWTESIQ-NSIKYVMLNPCSKLKGEKAWQKFETARRLRGF 295
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEKDD E ADTVGCC+L+V +V+
Sbjct: 296 VDEIRSQYQADWKSQEMKTRQRAVALYFIDKLALRAGNEKDDGEAADTVGCCSLRVEHVQ 355
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD---- 747
P + ++FDFLGKDSI+Y N V VE PVYK + F K DDLFD+L
Sbjct: 356 LHPEADGCQHVVEFDFLGKDSIRYYNRVPVEKPVYKNLQLFMKNKDPQDDLFDRLTVSRL 415
Query: 748 --------------TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVK 792
T LN HL ELM GLTAKVFRTYNAS+TL L T + +A K
Sbjct: 416 VFPQQWAVAGPGERTTSLNKHLHELMDGLTAKVFRTYNASVTLQEQLRALTRAEDSIAAK 475
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL 852
I Y RAN+ VAI+CNHQR S T M L KI+ K + + R +L +K +
Sbjct: 476 ILSYNRANRAVAILCNHQRATSSTFEKSMQNLQTKIQVKKEQVAEARAEL---RKARAEH 532
Query: 853 MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
DGK + L E R + + ++ + KE+ K VAL TSK+NYLDPRI++
Sbjct: 533 KAQGDGKSRSVL--EKKRRLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNYLDPRISI 590
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
AWCKR VP+EKI++K+ +FAWA+ + E F F
Sbjct: 591 AWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 625
>gi|309523|gb|AAA40466.1| DNA topoisomerase I [Mus musculus]
Length = 766
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 355/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K F
Sbjct: 217 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFW 276
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 277 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 336
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 337 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 395
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 396 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 454
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 455 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 514
Query: 697 CIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++ FDF KDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 515 LHPELDVQEYVVEFDFPWKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 574
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 575 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 634
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 635 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 689
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 690 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 749
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 750 REKFAWAIDMTYEDYEF 766
>gi|67623925|ref|XP_668245.1| DNA topoisomerase I [Cryptosporidium hominis TU502]
gi|54659457|gb|EAL38033.1| DNA topoisomerase I [Cryptosporidium hominis]
Length = 641
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 263/599 (43%), Positives = 376/599 (62%), Gaps = 55/599 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H GV+F PPY H V + Y G+ + L PE EE+A+ ++VM DT++ QK KF N
Sbjct: 44 QWEYLEHQGVMFAPPYKVHNVPLEYNGERIQLPPEAEEIASYWSVMKDTEWAQKEKFSNN 103
Query: 462 FWNDWRKLL---GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEE 518
+ + K H E C+F I + +++KE KK +S EEK+ K+ + QE
Sbjct: 104 VRKAFMNSIPVGDKLHNNLEWEKCNFDIIKQYFEDEKEAKKNLSKEEKELQKKCRGDQES 163
Query: 519 KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP 578
+++A+VD +KEKVGNFR+EPPGLF+GRGEHPK G LK+RI P D+T+NI +D P+P+ P
Sbjct: 164 PFVYALVDWIKEKVGNFRIEPPGLFKGRGEHPKSGMLKRRIFPEDVTLNIAEDAPVPKVP 223
Query: 579 --IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
+ G +WK++ HDNTVTWLA++ D IN +FKY+FL+ASS KG SD KYEKARKLKD
Sbjct: 224 NSMKGHAWKDIFHDNTVTWLAYYRDSIN-NQFKYIFLSASSGFKGMSDYNKYEKARKLKD 282
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNV 695
+I +IR+ Y K S D T+RQ+ ATYLID LALR G EKD D+EADTVGCC+L+V ++
Sbjct: 283 HIDAIRSDYRKKMTSGDITQRQLGTATYLIDFLALRVGGEKDTDEEADTVGCCSLRVEHI 342
Query: 696 ECIPPNK-LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
K + DFLGKDSI+Y NTV ++ + + F K + +++FD+++ + LN +
Sbjct: 343 TFNQQEKSITLDFLGKDSIRYYNTVVIDPSAFNNLTIFCRNKDKMENVFDQINMSSLNQY 402
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV----------------------- 791
LK +MP L+AKVFRT+NASITL+ L+K + V
Sbjct: 403 LKSIMPELSAKVFRTFNASITLERELSKISAKSAVKSEKKTKMELESCLKDELNLSNFNN 462
Query: 792 KIDV---------YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
++D+ Y AN+EVAI+CNHQR+V K H + M ++ ++ ++L+ LK L
Sbjct: 463 EVDITNVNDILRFYNDANREVAILCNHQRSVPKQHESSMEKMIKQQQELEEDLKICEAFL 522
Query: 843 DRAKK-GKPPLMKD---------SDGKRKR-----NLAPEALERKMAQTNAKIEKMERDM 887
KK K M D +GK+++ N + + +++K+ +KI + +
Sbjct: 523 KILKKNNKSVTMNDLPKLSTEVSFNGKQRKYPINLNSSLDVVQKKIDSIKSKISNLYLKI 582
Query: 888 KTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
K K+D KTVAL TSKINY+DPRI+VA+CK++++PI+KIFN+SL KF WAM +F F
Sbjct: 583 KIKDDNKTVALNTSKINYMDPRISVAFCKKYDLPIDKIFNRSLRTKFPWAMYTRSDFSF 641
>gi|45384130|ref|NP_990441.1| DNA topoisomerase 1 [Gallus gallus]
gi|1786132|dbj|BAA19101.1| DNA topoisomerase I [Gallus gallus]
Length = 766
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/557 (48%), Positives = 356/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVAT FA MLD +Y K FR
Sbjct: 217 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSTKAEEVATFFAKMLDHEYTTKEIFR 276
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L CDF + + + Q E +KQMS EEK+ +KEE +
Sbjct: 277 KNFFKDWRKEMTSEEKSTITSLSKCDFTHMSQYFKAQTEARKQMSKEEKQKIKEENERLL 336
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 337 KEYGYCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKVPPP 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 454
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 455 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 514
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 515 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 574
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 575 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTNPDDNIPAKILSYNRANRAVAILCNHQ 634
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R +L A K + +D K+ A E+ +
Sbjct: 635 RAPPKTFEKSMMNLQSKIDAKKEQLADARRELKSA-KADAKVRRDEKSKK----AVESKK 689
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +AL TSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 690 KAVQRIEEQLMKLEVQATDREENKQIALSTSKLNYLDPRISVAWCKKWGIPIEKIYNKTQ 749
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 750 REKFAWAIDMAEEDYEF 766
>gi|292626781|ref|XP_002666448.1| PREDICTED: DNA topoisomerase 1 [Danio rerio]
Length = 748
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 267/557 (47%), Positives = 361/557 (64%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +FPPPY LP +K Y G + L+P EEVAT +A ML+ +Y FR
Sbjct: 199 KWRFLEHKGPVFPPPYEPLPGHIKFYYDGNAMKLSPAAEEVATFYAKMLEHEYTTNEIFR 258
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I L+ CDF ++++ + Q E +KQMS EEK+ KEE +
Sbjct: 259 KNFFKDWRKEMTSEEKSKITELKKCDFTQMHEYFKAQSEARKQMSKEEKQKNKEENERIL 318
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++GNFR+EPPGLFRGRG+HPKMGKLK+RI+P DI IN KD P+
Sbjct: 319 QEYGFCLMDNHRERIGNFRIEPPGLFRGRGDHPKMGKLKRRIRPEDIIINCSKDSVQPKA 378
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 379 P-PGTRWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 436
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+ E ADTVGCC+L+V +++
Sbjct: 437 VERIRAQYREDWRSKEMRIRQRAVALYFIDKLALRAGNEKDEGETADTVGCCSLRVEHIK 496
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 497 LHPQLDGQDYVVEFDFLGKDSIRYYNKIPVEKRVFKNLQLFLENKQSEDDLFDRLNTSIL 556
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQ 810
N +L+ELM GLTAKVFRTYNASITL LN+ T G+ + KI Y RAN+ VA++CNHQ
Sbjct: 557 NKYLQELMDGLTAKVFRTYNASITLQQQLNELTSPGENIPEKILSYNRANRAVALLCNHQ 616
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI++ K L + + AK L + K A E +
Sbjct: 617 RAPPKTFEKSMQNLQTKIDEKKKQLSAAKKEHKAAKADAKALHDEKSKK-----AVETKK 671
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + + ++ K+E +E+ K +ALGTSK+NYLDPRI+V+WCK+ VPIEKI++K+
Sbjct: 672 KAVQRISEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVSWCKKWGVPIEKIYSKTQ 731
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 732 RDKFAWAIDMADEDFEF 748
>gi|326931793|ref|XP_003212009.1| PREDICTED: DNA topoisomerase 1-like [Meleagris gallopavo]
Length = 758
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/557 (48%), Positives = 356/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVAT FA MLD +Y K FR
Sbjct: 209 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSTKAEEVATFFAKMLDHEYTTKEIFR 268
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L CDF + + + Q E +KQMS EEK+ +KEE +
Sbjct: 269 KNFFKDWRKEMTSEEKSTITSLSKCDFTHMSQYFKAQTEARKQMSKEEKQKIKEENERLL 328
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 329 KEYGYCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKVPPP 388
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 389 P-PGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 446
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 447 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 506
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 507 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 566
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 567 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTNPDDNIPAKILSYNRANRAVAILCNHQ 626
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R +L A K + +D K+ A E+ +
Sbjct: 627 RAPPKTFEKSMMNLQSKIDAKKEQLADARRELKSA-KADAKVRRDEKSKK----AVESKK 681
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +AL TSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 682 KAVQRIEEQLMKLEVQATDREENKQIALSTSKLNYLDPRISVAWCKKWGIPIEKIYNKTQ 741
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 742 REKFAWAIDMAEEDYEF 758
>gi|358057102|dbj|GAA97009.1| hypothetical protein E5Q_03683 [Mixia osmundae IAM 14324]
Length = 863
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/458 (51%), Positives = 317/458 (69%), Gaps = 10/458 (2%)
Query: 392 MLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
+ G GDG+ KW TL HNG++FPP Y+PHGVKMLY G+ V+L PE EEVA F ++++D
Sbjct: 226 LTQGEGDGEIKWETLEHNGILFPPEYVPHGVKMLYDGQPVDLPPEAEEVAGFFGALIESD 285
Query: 452 YMQKPKFRENFWNDWRKLLGKNHV------IQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
+ + F +NF+ D++++L K+H IQ + CDF+P+++ + +KE +K M+ ++
Sbjct: 286 HAENRTFVDNFFADFQEVL-KDHPPTNGIDIQEFDRCDFRPMFEHFEREKEARKSMTKDQ 344
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
K +K +K EE Y + +++G KEKVGNFRVEPPGLFRGRG+HPK GKLKKR+Q IT
Sbjct: 345 KAKVKADKEALEEPYKFCLLNGRKEKVGNFRVEPPGLFRGRGQHPKTGKLKKRLQAEQIT 404
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
+NIGKD +PE P G SW +V+HDNTVTWLA W + IN FKYVFLAA SSLKGQSD
Sbjct: 405 LNIGKDAKVPEPP-AGHSWAKVEHDNTVTWLATWRENINDA-FKYVFLAAGSSLKGQSDH 462
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
+K+EKAR+LK++I IR Y + +++ RQ A YLID ALRAGNEK DDEADTV
Sbjct: 463 KKFEKARELKNHIDRIRTDYRAELKAKEMVIRQRATCMYLIDIFALRAGNEKGDDEADTV 522
Query: 686 GCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDD-LFD 744
GCC+L+ ++ PPN + FDFLGKDSI++V V+ V+K + F+ K + D LFD
Sbjct: 523 GCCSLRYEHITLQPPNIVIFDFLGKDSIRFVQEARVDEQVFKNLVIFKKDPKTDGDLLFD 582
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
++ T LN HL+ M GL+AKVFRTYNAS T + L K D V K+ Y RAN++VA
Sbjct: 583 RMSTLTLNKHLRTYMNGLSAKVFRTYNASSTFERELEKTPADVSVPDKLLAYNRANRQVA 642
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
I+CNHQR+VSKTHSA M +L +K+ +K RV L
Sbjct: 643 ILCNHQRSVSKTHSAAMEKLADKLRAVKFQRYRARVAL 680
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
L E L +A+ +IE +E+ K V+L TSKINY+DPR++V W ++H VPIE
Sbjct: 781 LTEEKLLASIAKLTERIEAQRMQALDREEGKEVSLTTSKINYIDPRLSVVWARKHNVPIE 840
Query: 924 KIFNKSLLAKFAWAMDVDPEFRF 946
K+F+K+L KF WAM V+ +F+F
Sbjct: 841 KLFSKTLRDKFPWAMAVEDDFKF 863
>gi|268561720|ref|XP_002646512.1| C. briggsae CBR-TOP-1 protein [Caenorhabditis briggsae]
Length = 730
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/567 (48%), Positives = 355/567 (62%), Gaps = 40/567 (7%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL H G +F P Y LP V Y G + L+P EE AT +A +++ +Y + +F
Sbjct: 182 KWNTLQHCGPLFAPAYIPLPDHVHFKYNGHRMKLSPAAEECATFYAGVVNHEYSSQVQFN 241
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF DWRKL+ G+ I +L CDF I ++ EQ+E +K M+ EEK +KEEK ++
Sbjct: 242 TNFMKDWRKLMTSGEREKITDLAKCDFTHIVEYQNEQREIRKAMTKEEKAKIKEEKAQEV 301
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y AI+DG KEK+ NFR+EPPG+FRGRG HPKMG +KKRI P D+ +N GKD IP+
Sbjct: 302 VDYGIAIIDGHKEKIANFRIEPPGVFRGRGGHPKMGFIKKRIVPEDVIVNCGKDSVIPKP 361
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P+ G WKEV+HDNTV+WL W + + + KY+ L ASS +KG D EKYE AR+LK
Sbjct: 362 PL-GHKWKEVRHDNTVSWLCSWTESVLGQN-KYIMLNASSKIKGSKDYEKYETARRLKKK 419
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR Y D+ S++ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+ +++
Sbjct: 420 IGGIRERYIADWKSKEMRIRQRATALYFIDKLALRAGNEKDVDESADTVGCCSLRYEHIK 479
Query: 697 CIPPNKLK------------FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL+ FDFLGKDSI+Y N V VE V+K + F KK DDLFD
Sbjct: 480 LFESAKLQETDKKEKEFVVEFDFLGKDSIRYFNRVAVEKRVFKNLKLFMENKKAGDDLFD 539
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D +VA KI Y RAN++V
Sbjct: 540 RLDTATLNEHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPDDNVAAKILSYNRANRQV 599
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AI+CNHQR VSK M++L +KI+D K +K+ L A+ G K
Sbjct: 600 AILCNHQRAVSKGFDESMAKLEQKIKDKKAEVKEAEAALKSAR-----------GAEKEK 648
Query: 864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
+ ++K KI++ ++D + K +ALGTSK+NY+DPRITVAWCK+ EVP+E
Sbjct: 649 AQKKYDQKKEQLKKLKIQRTDKD-----ENKQIALGTSKLNYIDPRITVAWCKKFEVPLE 703
Query: 924 KIFNKSLLAKFAWAMDV----DPEFRF 946
++F K+ KF WA+D+ D EF F
Sbjct: 704 RVFTKTHREKFRWAIDMTMTTDEEFVF 730
>gi|113195566|ref|NP_001037789.1| topoisomerase (DNA) I, like [Danio rerio]
gi|108742084|gb|AAI17589.1| Topoisomerase (DNA) I, like [Danio rerio]
Length = 758
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 273/557 (49%), Positives = 354/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P EEVAT F+ MLD +Y K FR
Sbjct: 209 KWKFLEHKGPVFAPPYEPLPSNVKFYYDGKHMKLSPNAEEVATFFSKMLDHEYTTKDIFR 268
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L CDF + ++ + Q E +K M+ EEK +KEE +
Sbjct: 269 KNFFKDWRKEMTSEEKSKITDLNKCDFSNMSEYFKAQSEARKAMTKEEKLKIKEENERIL 328
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD P
Sbjct: 329 QEYGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKHP-T 387
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 388 PPPGTKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 446
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 447 VDRIRSQYRDDWKSKEMKIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHLT 506
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 507 LHPEMDGQEFVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMEDKEPEDDLFDRLNTSIL 566
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL LN+ T D V KI Y RAN+ VAI+CNHQ
Sbjct: 567 NKHLQELMDGLTAKVFRTYNASITLQQQLNELTNSEDNVPAKILSYNRANRAVAILCNHQ 626
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L + + +L + K + KD K+ +AL+
Sbjct: 627 RAPPKTFEKSMQNLQTKIDAKKEQLVEAKREL-KGAKADAKVRKDEKFKKAVEAKKKALQ 685
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PIEKI+NK+
Sbjct: 686 R----VEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKFGIPIEKIYNKTQ 741
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 742 REKFAWAIDMAEKDYEF 758
>gi|449281112|gb|EMC88275.1| DNA topoisomerase I, mitochondrial [Columba livia]
Length = 593
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/558 (49%), Positives = 363/558 (65%), Gaps = 21/558 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KWT L H G F P Y LP V Y GK + L+ EE+AT +A MLD +Y K F+
Sbjct: 44 KWTQLEHRGPYFAPLYEPLPDDVHFYYDGKPLKLSLATEEIATFYAKMLDHEYTTKEIFQ 103
Query: 460 ENFWNDWRK--LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+NDWRK L + +I +L+ CDF I+ + ++ E +K +S EEK+ LKEE +K +
Sbjct: 104 NNFFNDWRKEMTLMEQKIITDLDKCDFSEIHKYFVDKSEARKALSKEEKQKLKEEADKIQ 163
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E+Y + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRI P D+ IN K+ IP+
Sbjct: 164 EEYGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKKRIMPEDVIINCSKNSKIPK- 222
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D KYE AR+LKD
Sbjct: 223 PPEGHKWKEVRFDNTVTWLASWTENIQ-NTLKYIMLNPSSKLKGEKDWHKYEVARRLKDV 281
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 282 VQKIRAQYRADWKSKEMKNRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 341
Query: 697 CI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+ ++FDFLGKDSI+Y N V VE PV+K + F K DDLFD+L T L
Sbjct: 342 LHRELDGQEHVVEFDFLGKDSIRYYNKVSVEKPVFKNLKMFMKNKDPADDLFDQLSTCIL 401
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L T D +VA K+ Y RAN+ VAI+CNHQ
Sbjct: 402 NKHLQKLMDGLTAKVFRTYNASITLQEQLKALTNPDDNVAGKLLSYNRANRAVAILCNHQ 461
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEAL 869
R++ KT M L KI+ K +++ + +L A+ KD+ D K K N+ +
Sbjct: 462 RSIPKTFEKSMQNLQAKIDAKKQQVEEAKQELKNAEDE----FKDTKDDKAKANVEKKK- 516
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+ + + ++ K+ KE+ K +ALGTSK+NYLDPRI++AWCK+ VPIEKI+NK+
Sbjct: 517 -KLLKRLEEQLAKLNVQATDKEENKQIALGTSKLNYLDPRISIAWCKKFGVPIEKIYNKT 575
Query: 930 LLAKFAWAMDV-DPEFRF 946
KFAWA+D+ D +F F
Sbjct: 576 QREKFAWAIDMADEDFEF 593
>gi|345313087|ref|XP_001519186.2| PREDICTED: DNA topoisomerase I, mitochondrial-like, partial
[Ornithorhynchus anatinus]
Length = 1043
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/561 (49%), Positives = 355/561 (63%), Gaps = 27/561 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP V Y GK + L+ EE+AT + MLD +Y K F+
Sbjct: 494 KWKQLEHRGPYFAPLYEPLPDHVHFYYNGKPMKLSLVTEEIATFYGKMLDHEYTTKDIFQ 553
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWRK + + I+ LE CDF I+ + ++ E +K + EEK+ LKEE K +
Sbjct: 554 NNFFSDWRKEMTPEEQKTIKCLEECDFTEIHKYFVDKNEARKALPKEEKQKLKEEAEKLQ 613
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRI P D+ IN KD IPE
Sbjct: 614 EEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGLLKKRIMPEDVIINCSKDSKIPEP 673
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D +KYE AR+LK
Sbjct: 674 P-SGHKWKEVRFDNTVTWLASWTENIQ-NSIKYIMLNPSSKLKGEKDWQKYELARRLKGV 731
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y D+ S++ +RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 732 VDKIRAQYRADWKSKEMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQ 791
Query: 697 CI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+ ++FDFLGKDSI+Y N V VE VYK + F K DDLFD+L T L
Sbjct: 792 LHREMDGQEHVVEFDFLGKDSIRYYNKVPVEKQVYKNLRLFMQNKDPGDDLFDRLSTTSL 851
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L T + +VA KI Y RAN+ VAI+CNHQ
Sbjct: 852 NKHLQDLMDGLTAKVFRTYNASITLQEQLKALTDAEDNVAAKILSYNRANRAVAILCNHQ 911
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L + +L RAK +D K K+++ ++
Sbjct: 912 RATPKTFEKSMQNLQAKIDAKKEQLDEAVTELKRAK---------ADHKAKKDIKSKSNL 962
Query: 871 RKMAQTNAKIE----KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
K + KIE K+ KE+ K +ALGTSK+NYLDPRI+VAWCK+ VPIEKI+
Sbjct: 963 EKKKKLLQKIEEQLMKLSVQATDKEENKQIALGTSKLNYLDPRISVAWCKKFGVPIEKIY 1022
Query: 927 NKSLLAKFAWAMDV-DPEFRF 946
NK+ KFAWA+D+ D +F F
Sbjct: 1023 NKTQREKFAWAIDMADEDFEF 1043
>gi|432865646|ref|XP_004070544.1| PREDICTED: DNA topoisomerase 1-like [Oryzias latipes]
Length = 765
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 269/557 (48%), Positives = 354/557 (63%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y LP VK Y GK + L+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWRFLEHKGPVFVPAYEPLPEKVKFYYNGKPMKLSAPAEEVATFFAKMLDHEYTTKDIFR 275
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + +I +L+ CDF + ++ + Q E +KQMS EEK+ +KEE +
Sbjct: 276 KNFYKDWRKEMTSEEKSIITDLKKCDFSEMNEYFKAQSEARKQMSKEEKQKIKEENERLL 335
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+Y + I+D +E++GNFR+EPPGLFRGRG+HPKMG LK+RI+P D+ IN KD P+
Sbjct: 336 SEYGFCIMDNHRERIGNFRIEPPGLFRGRGDHPKMGMLKRRIRPEDVIINCSKDSKHPK- 394
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWLA W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 395 PPPGTKWKEVRHDNKVTWLASWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 454 VDRIRTQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 513
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 514 LFPKMDEQEYVVEFDFLGKDSIRYYNKIPVEKRVFKNLQLFLENKQPEDDLFDRLNTSIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L + T D + K+ Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQELMDGLTAKVFRTYNASITLQQQLKELTCCDDSIPAKLLSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI++ + L R L AK D K A E
Sbjct: 634 RAPPKTFEKSMQNLQTKIDEKQNQLSAARKQLKAAKANHKASHDDKSKK-----AVEVKR 688
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K++ +E+ K +ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+
Sbjct: 689 KAVQRIEEQLMKLQMQATDREENKQIALGTSKLNYLDPRISVAWCKKWGVPIEKIYNKTQ 748
Query: 931 LAKFAWAMDV---DPEF 944
KFAWA+D+ D EF
Sbjct: 749 REKFAWAIDMAEKDYEF 765
>gi|260947406|ref|XP_002618000.1| hypothetical protein CLUG_01459 [Clavispora lusitaniae ATCC 42720]
gi|238847872|gb|EEQ37336.1| hypothetical protein CLUG_01459 [Clavispora lusitaniae ATCC 42720]
Length = 764
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 322/790 (40%), Positives = 433/790 (54%), Gaps = 109/790 (13%)
Query: 239 SDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQ 298
SD E + S+ PK G+ K D E+ PLAS NGS + ++KS+S +
Sbjct: 2 SDSEEIVLSQLPKPQNGSLEIK--DETEEAPLAS---LNGSPKK--KRKSTSKENGSSSK 54
Query: 299 KASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTN 358
K +S D ++K T VE A D D + K S + +K T
Sbjct: 55 KKKTSKKKQKTTKVKEDP----EIKSETTDVEPVAKDSDR----KASKKSTATPRKD-TE 105
Query: 359 TAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGS--GDGQKKWTTLVHNGVIFPPP 416
T K S+ + K K+SQ ++ K G+G +W TL HNGVIFPPP
Sbjct: 106 TPKPETSLEPETPK---------KDSQEAEDYKWWEDEKFGEGPDRWQTLEHNGVIFPPP 156
Query: 417 Y--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNH 474
Y LP VK+ Y K VNL EEVA FA ML+TD+ + P F++NF+ D+ ++L +N
Sbjct: 157 YKPLPSYVKLYYDSKPVNLPLAAEEVAGFFAEMLETDHAKNPVFQKNFFEDFLQVLRENG 216
Query: 475 V----IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKE 530
I + CDF ++ + +E+KK MS EK LK+E+ EE Y +++G +E
Sbjct: 217 GCDVDITEFDKCDFSKMHAHFVKVREEKKNMSKAEKLRLKQEREALEEPYRTCLLNGRRE 276
Query: 531 KVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHD 590
VGNF+VEPP LFRGRG HPK GKLKKR+ P DIT+N+G + PIP P G W E++HD
Sbjct: 277 NVGNFKVEPPSLFRGRGAHPKTGKLKKRVYPEDITLNLGIEAPIPPAP-EGHKWGEIRHD 335
Query: 591 NTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV 650
+V WLA W + I+ FKYV LAA+SS+KG SD +K+E AR+LKD+I IR Y K
Sbjct: 336 KSVVWLAMWKENIS-DSFKYVKLAANSSIKGISDMKKFETARRLKDHIERIRDDYKKMLK 394
Query: 651 SRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGK 710
RQIA ATYLID ALRAG EK +DEADTVGCC+L+ +V PPN + FDFLGK
Sbjct: 395 DPFMQNRQIATATYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTLRPPNTVIFDFLGK 454
Query: 711 DSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAHLKELMPGLTAKVFRT 769
DSI++ VEV+ V+K + F+ KQ DDLFD++ A LN HL+ M GLTAKVFRT
Sbjct: 455 DSIRFYQEVEVDRQVFKNLRIFKKEPKQPGDDLFDRITPATLNKHLQAYMKGLTAKVFRT 514
Query: 770 YNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
YNAS T+ ++ +G VA K+ Y AN+ VAI+CNHQRTVSK H + ++ EKI+
Sbjct: 515 YNASKTMQDQMDLIPNEGTVAEKVMKYNAANRTVAILCNHQRTVSKAHQNSVGKIQEKIK 574
Query: 830 DL---KGVLKDLRVDLDRAKKGKPP--------------LM--------KDSDGKRKRN- 863
++ K LK + + LD ++K K P LM + KRK
Sbjct: 575 EMEWQKIRLKKMILVLDSSQKAKNPKYFEELEDMTSEDQLMVVTQMIERQREQAKRKWTR 634
Query: 864 ------------LAPEALERKMAQTNA---------------------------KIEKME 884
L E L+ K+++ A +IEK+E
Sbjct: 635 DNEKRAMEKQELLTEEDLQEKLSKIKASEEEYRHEIESGEVEVTKGASVEKLKVQIEKIE 694
Query: 885 R-------DMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA 937
+K KED V+LGTSK+NY+DPR+TV + K+ VPIEK+F K+L KF WA
Sbjct: 695 NRILNTNFQLKDKEDNSEVSLGTSKLNYIDPRLTVMFAKKFNVPIEKLFTKTLREKFTWA 754
Query: 938 MD-VDPEFRF 946
++ D +RF
Sbjct: 755 IESADENWRF 764
>gi|340053149|emb|CCC47436.1| putative DNA topoisomerase IB, large subunit [Trypanosoma vivax
Y486]
Length = 610
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/453 (52%), Positives = 310/453 (68%), Gaps = 5/453 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y+G++ ++TPE+EEVATMFAV+ + DY + F
Sbjct: 48 GERRWETLSHNGVMFPPEYEPHGISIFYEGQKFDMTPEEEEVATMFAVLREQDYYRNEIF 107
Query: 459 RENFWNDWRKLLGKN-HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF PIY+WH ++EKK + EEKK + K+
Sbjct: 108 RRNFFASWREILDKRKHPIRRLELCDFTPIYEWHLREREKKLNRTKEEKKEQRLATEKEA 167
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MG+LKKR+ P DITINI ++ PIPE
Sbjct: 168 EPYKFCLWDGRREQVANFRVEPPGLFRGRGQHPMMGRLKKRVTPEDITINIDENSPIPEP 227
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV HD+ VTWLA W D I KYV LA SS++KGQSD K+EKAR+LK +
Sbjct: 228 P-RGHKWKEVLHDHNVTWLAMWRDSI-LGNMKYVMLAPSSTIKGQSDMLKFEKARELKRH 285
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ +IR +YT DF S + Q AVA Y IDKLALR GNEK DEADTVGCC+L+V ++E
Sbjct: 286 VDNIRKSYTGDFYSSNLMVAQRAVAMYFIDKLALRVGNEKGADEADTVGCCSLRVEHIEL 345
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
P N +KFDFLGKDSI+Y N VE VY+ + +F K+ +DD+FD + + LN HLK
Sbjct: 346 KPGNVVKFDFLGKDSIRYENEAVVETKVYELLQRFTARKRPSDDIFDMITPSSLNDHLKS 405
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNAS TLD + D +A K+ + +AN EVAI+CNHQRT+ K
Sbjct: 406 FMNGLSAKVFRTYNASYTLDRWFQEKPVDPNASLADKLAYFNKANTEVAILCNHQRTIPK 465
Query: 816 THSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG 848
+H M + K + + +L L+ D +KK
Sbjct: 466 SHYTTMHVMKSKSDYTRSILNALKRARDVSKKS 498
>gi|403215856|emb|CCK70354.1| hypothetical protein KNAG_0E00860 [Kazachstania naganishii CBS
8797]
Length = 762
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/632 (43%), Positives = 378/632 (59%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGV+FPP Y LP VK+ Y K V+L EEVA +A +L T + +
Sbjct: 133 DDSIKWTTLKHNGVMFPPDYQPLPSHVKLYYDRKPVDLPLPAEEVAGFYAALLGTQHAEN 192
Query: 456 PKFRENFWNDWRKLLGKNHVIQN------LEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
F++NF+ D+ ++L +N N + CDF I+ + +++KE+K+Q+S++E+K L
Sbjct: 193 TIFQKNFFQDFLQILRENGGALNGINIVLFDKCDFSKIHGYLEQKKEEKRQLSAQERKQL 252
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
++ K ++EE Y + +DG +E+VGNFRVEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 253 RQAKAEEEEPYKFCELDGRREQVGNFRVEPPDLFRGRGAHPKTGKLKRRVYPEDIMLNLS 312
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PIP P G W E++HDN V WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 313 KDAPIPPAP-EGHHWGEIRHDNAVQWLAMWRENIF-GSFKYVRLAANSSLKGQSDFKKFE 370
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI SIR Y K+ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 371 KARELKKYIDSIRRDYRKNLKSKVMLERQKAVALYLIDVFALRAGGEKSEDEADTVGCCS 430
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PP + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 431 LRYEHVTLRPPKTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 490
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+CN
Sbjct: 491 SLLNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKLLRYNAANRAVAILCN 550
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPPLM---------KDS 856
HQRTV+K+H+ + + ++IE+L K LK + L+ +++ P +
Sbjct: 551 HQRTVTKSHAQSVEKAVQRIEELTWQKIRLKRTILQLEPSERKSDPTFFAEIDTLTREQE 610
Query: 857 DGKRKRNLAPE--ALERKMAQTNAK----------------------------------- 879
+ KR L E E+K A+ N K
Sbjct: 611 EAIHKRVLGRERAKYEKKFARENEKRQFDGGEPLPPSTLTEWLEKVDQMGQEFATELETG 670
Query: 880 ----------IEKMERDM-KTKEDLKT-------------VALGTSKINYLDPRITVAWC 915
+EK+++ + K +E +KT V+LGTSKINY+DPR++V +C
Sbjct: 671 LVATKPSLNTVEKLQKQVQKLEERIKTATVQLRDKEENSEVSLGTSKINYIDPRLSVVFC 730
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K++ VPIEK+F KSL KF WA + VD E+RF
Sbjct: 731 KKYGVPIEKVFTKSLREKFKWATESVDAEWRF 762
>gi|395860138|ref|XP_003802372.1| PREDICTED: DNA topoisomerase I, mitochondrial, partial [Otolemur
garnettii]
Length = 572
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 264/560 (47%), Positives = 352/560 (62%), Gaps = 19/560 (3%)
Query: 399 GQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKP 456
G+ +W+ L H G F PPY LP V+ LY GK + L+ EEVAT + +LD +Y K
Sbjct: 20 GRVQWSQLEHRGPHFTPPYEPLPDEVRFLYDGKPLKLSLAAEEVATFYGKILDHEYTTKE 79
Query: 457 KFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKN 514
F+ NF++DW+K + + VI +L+ CDF I+ + ++ +K + EEK+ LKE
Sbjct: 80 VFQNNFFSDWQKEMTTEERKVITSLDKCDFTEIHRYFADKAVARKALPREEKQKLKEAAE 139
Query: 515 KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPI 574
K ++++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG +KKR+ P D+ IN +D I
Sbjct: 140 KLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMVKKRVLPEDVVINCSRDSKI 199
Query: 575 PECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKL 634
PE P G WKEV+ DNTVTWLA W + + KY+ L +S L+G+ D +KYE AR+L
Sbjct: 200 PEPPT-GHQWKEVRTDNTVTWLASWTENVQS-SIKYITLNPNSKLRGEKDWQKYETARRL 257
Query: 635 KDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVG 693
K + IR+ Y D+ S RQ AVA YLIDKLALRAG+ K++ E ADT GCC+L+V
Sbjct: 258 KGVVAEIRSQYQADWRSGGMRTRQRAVALYLIDKLALRAGSRKEEGEVADTAGCCSLRVR 317
Query: 694 NVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+V P ++FDFLGKD+I+Y N V VE PVY+ + F K+ D LFD L T
Sbjct: 318 HVRLHPEADGHKYVVEFDFLGKDAIRYYNRVPVEGPVYENLQLFMDHKEPEDKLFDGLTT 377
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIIC 807
A LN HL++LM GLTAKVFRTYNASITL G L T + VA KI Y RAN+ VAI+C
Sbjct: 378 ASLNRHLQDLMDGLTAKVFRTYNASITLQGQLRALTRAEDSVAAKILSYNRANRAVAILC 437
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE 867
NHQR KT M L KI+ K + + V+L RAK DGK + L E
Sbjct: 438 NHQRAAPKTFEKSMQNLQTKIKVKKEQVAEAMVELRRAKADSEI---KGDGKSRSVL--E 492
Query: 868 ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
R + + ++ ++ +E+ K VALGTSK+NYLDPRI++AWCKR VPIEKI+N
Sbjct: 493 KKRRSLEKLQEQLARLSAQATAREENKQVALGTSKLNYLDPRISIAWCKRFGVPIEKIYN 552
Query: 928 KSLLAKFAWAMDVDPE-FRF 946
K+ KFAWA ++ E F F
Sbjct: 553 KTQREKFAWAFNMAGEDFEF 572
>gi|147900774|ref|NP_001084031.1| DNA topoisomerase 1 [Xenopus laevis]
gi|1174739|sp|P41512.1|TOP1_XENLA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|214834|gb|AAB36608.1| DNA topoisomerase I [Xenopus laevis]
Length = 829
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 267/554 (48%), Positives = 347/554 (62%), Gaps = 30/554 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY +P VK Y G V L+P+ EEVAT FA MLD +Y K FR
Sbjct: 272 KWKFLEHKGPVFAPPYEPVPDNVKFYYDGNLVKLSPKAEEVATFFAKMLDHEYTTKDIFR 331
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DW+K + + ++I NL CDF + + +EQ E +K M+ EEK +K E +
Sbjct: 332 KNFFKDWKKEMTTDERNLITNLSKCDFNAMSLYFKEQSEARKNMTKEEKLKIKAENERLL 391
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NFR+EPPGLFRGRG+HPKMGKLKKRI P DI IN KD IP
Sbjct: 392 QEYGYCIMDNHKERIANFRIEPPGLFRGRGDHPKMGKLKKRIMPEDIIINCSKDSKIPVA 451
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 452 P-AGHKWKEVRHDGKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKMC 509
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 510 VEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 569
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
++FDF GKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 570 LFQELDGQEFVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPDDDLFDRLNTSIL 629
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L++ T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 630 NKHLQDLMEGLTAKVFRTYNASITLQQQLDELTNSDDNVPAKILSYNRANRAVAILCNHQ 689
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R + AK +D K +R+ + L
Sbjct: 690 RAPPKTFEKSMMNLQGKIDAKKDQLADARREFKSAK---------ADAKVRRDEKTKKLV 740
Query: 871 RKMAQTNAKIE----KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+ +IE K+E +E+ K +ALGTSK+NYLDPRI+VAWCK++ VPIEKI+
Sbjct: 741 ESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKYGVPIEKIY 800
Query: 927 NKS----LLAKFAW 936
NK+ LL W
Sbjct: 801 NKTQRKNLLGPSIW 814
>gi|119497075|ref|XP_001265305.1| topoisomerase I [Neosartorya fischeri NRRL 181]
gi|119413467|gb|EAW23408.1| topoisomerase I [Neosartorya fischeri NRRL 181]
Length = 886
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 294/685 (42%), Positives = 403/685 (58%), Gaps = 50/685 (7%)
Query: 210 NSKNVNQGI-GASKADAAISEVNVKTDPEDSDDE-VPLSSRFPKSNAGTSGAKPIDSDEK 267
++ + N GI G KA ++ + +PE S+DE PLS R P ++DE
Sbjct: 57 DASDANTGIAGKRKARTSVGQRKSYAEPESSEDEDQPLSKR---RRTSVKHEDP-ETDED 112
Query: 268 KPLA---SKVQQNGSTSRETQQKSSSVPVKRPL----QKASSSGASSAKKPKVSDTSKEV 320
PLA K+ + T+ ++ S VP++R L +K AK + SD S+
Sbjct: 113 VPLALNGRKLPKASETAVGAEESDSDVPIERKLLAQKKKIQQRAEKDAKASRKSDASQAA 172
Query: 321 KVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKV 380
K + K + + P+ ++ P+VKK+ T A A + S+ + K K
Sbjct: 173 KATAASKKKQANGVKKE--PVDEK----KPAVKKT-TKQANAEPAASARNGKTKATPVKK 225
Query: 381 IKNSQYSKSTKML--------PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
++++ + + P GDG KWTTL HNGV+FPPPY LP VKM Y G
Sbjct: 226 EESTEVEEGEEEEEEYRWWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPSDVKMKYDGVP 285
Query: 431 VNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFWNDWRKLL----------GKNHVIQNL 479
V L PE EEVA F ML+ T +++ P F++NF+ D++++L G I+
Sbjct: 286 VTLHPEAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKEVLKKTGGAKDPKGNKIEIKEF 345
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
CDF+PI+D+++ ++ +KK + EKK LK EK+ E YM+ + DG K+KVGNFRVEP
Sbjct: 346 SKCDFRPIFDYYEAKRIEKKNLPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKVGNFRVEP 405
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
P LFRGRGEHPK G++K R+QP ITINIGKD P+P P G WKEVKHD TWLA W
Sbjct: 406 PALFRGRGEHPKTGRVKARVQPEQITINIGKDAPVPPPP-EGHRWKEVKHDQEGTWLAMW 464
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ IN +KYV LAA+S +KG SD +K+EKAR+LK +I IR Y K RQ
Sbjct: 465 QENIN-GNYKYVMLAANSDVKGLSDYKKFEKARELKKHIDRIRKDYQKALKHELMVERQK 523
Query: 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 719
A A YLID+ ALRAGNEK +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++ + V
Sbjct: 524 ATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEV 583
Query: 720 EVELPVYKAIGQFQT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
EV+ V+K + F+ KK+ D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+
Sbjct: 584 EVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTMAT 643
Query: 779 MLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVL 835
+L G VA K+ Y AN+ VAI+CNH+RTV+ +H+ QM +++E+I+ L + L
Sbjct: 644 LLKDMKATGSVAEKVKAYNDANRRVAILCNHKRTVTASHANQMEKMSERIKGLRYQRWRL 703
Query: 836 KDLRVDLD---RAKKGKPPLMKDSD 857
K +DLD + KKG D D
Sbjct: 704 KQQMLDLDPSLKKKKGAKFFEMDED 728
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE ME + KE+ K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 806 EKLEAAITKLEQRIETMELQAQDKEENKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFF 865
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+KSL KF WA+ VD + F
Sbjct: 866 SKSLREKFEWAIKSVDENWEF 886
>gi|70990502|ref|XP_750100.1| topoisomerase I [Aspergillus fumigatus Af293]
gi|66847732|gb|EAL88062.1| topoisomerase I [Aspergillus fumigatus Af293]
gi|159130581|gb|EDP55694.1| topoisomerase I [Aspergillus fumigatus A1163]
Length = 998
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 294/689 (42%), Positives = 397/689 (57%), Gaps = 58/689 (8%)
Query: 210 NSKNVNQGI-GASKADAAISEVNVKTDPEDSDDE-VPLSSRFPKSNAGTSGAKPIDSDEK 267
++ + N G+ G KA ++ E +PE S+DE PLS R P ++DE
Sbjct: 169 DATDANTGVAGKRKARTSVGERKSYAEPESSEDEDQPLSKR---RRTSVKHEDP-ETDED 224
Query: 268 KPLA---SKVQQNGSTSRETQQKSSSVPVKRPL--------QKASSSGASSAKKPKVSDT 316
PLA K+ + T+ ++ S VP++R L QKA +S K
Sbjct: 225 VPLALNGRKLPKASETALGAEESDSDVPIERKLVAQKKKIQQKAEKDAKASRKSDASQAA 284
Query: 317 SKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKK 376
K+ V K S+ + P+VKK+ T A A + S+ + K
Sbjct: 285 KATAASKKKQVNGVK----------SEPVDEKKPAVKKT-TKQANAEPAASARNGKTKAT 333
Query: 377 TKKVIKNSQYSKSTKML--------PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLY 426
K ++++ + + P GDG KWTTL HNGV+FPPPY LP VKM Y
Sbjct: 334 PVKKEESTEAEEGEEEEEEYRWWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPSDVKMKY 393
Query: 427 KGKEVNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFWNDWRKLL----------GKNHV 475
G V L PE EEVA F ML+ T +++ P F++NF+ D++++L G
Sbjct: 394 DGVPVTLHPEAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKEVLEKTGGAKDPKGNKIE 453
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I+ CDF+PI+D++ ++ +KK + EKK LK EK+ E YM+ + DG K+KVGNF
Sbjct: 454 IKEFSKCDFRPIFDYYDAKRIEKKNLPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKVGNF 513
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
RVEPP LFRGRGEHPK G++K R+QP ITINIGKD P+P P G WKEVKHD TW
Sbjct: 514 RVEPPALFRGRGEHPKTGRVKARVQPEQITINIGKDAPVPPPP-EGHRWKEVKHDQEGTW 572
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + IN +KYV LAA+S +KG SD +K+EKAR+LK +I IR Y K
Sbjct: 573 LAMWQENIN-GNYKYVMLAANSDVKGLSDYKKFEKARELKKHIDRIRKDYQKALKHELMV 631
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQY 715
RQ A A YLID+ ALRAGNEK +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++
Sbjct: 632 ERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKPPNKVIFDFLGKDSIRF 691
Query: 716 VNTVEVELPVYKAIGQFQT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASI 774
+ VEV+ V+K + F+ KK+ D++FD+L T+ LN HL MPGLTAKVFRTYNAS
Sbjct: 692 YDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASY 751
Query: 775 TLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL--- 831
T+ +L G VA K+ Y AN+ VAI+CNH+RTV+ +H+ QM +++E+I+ L
Sbjct: 752 TMATLLKDMKATGSVAEKVKAYNDANRRVAILCNHKRTVTASHANQMEKMSERIKGLRYQ 811
Query: 832 KGVLKDLRVDLD---RAKKGKPPLMKDSD 857
+ LK +DLD + KKG D D
Sbjct: 812 RWRLKQQMLDLDPSLKKKKGAKFFEMDED 840
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE ME + KED K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 918 EKLEAAITKLEQRIETMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFF 977
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+KSL KF WA+ VD + F
Sbjct: 978 SKSLREKFEWAIKSVDENWEF 998
>gi|395512779|ref|XP_003760611.1| PREDICTED: DNA topoisomerase I, mitochondrial [Sarcophilus
harrisii]
Length = 834
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 274/567 (48%), Positives = 362/567 (63%), Gaps = 28/567 (4%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
S DG K W L H G F P Y LP V Y GK + L+ EE+AT + MLD +Y
Sbjct: 280 SEDGVK-WKQLEHKGPYFAPLYEPLPDEVHFYYDGKAMKLSLATEEIATFYGKMLDHEYT 338
Query: 454 QKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
K F+ NF+NDWRK + + +I++L CDF I+ + ++ E +K + EEK+ LKE
Sbjct: 339 TKEVFQNNFFNDWRKEMTVEEKKIIKHLNKCDFTEIHKYFVDKNEARKALPKEEKQKLKE 398
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
E + +E + + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRI P D+ IN +D
Sbjct: 399 EAERLQEAFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKKRIMPEDVIINCSRD 458
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
IPE P PG WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D +KYE A
Sbjct: 459 SKIPEPP-PGHKWKEVRFDNTVTWLASWTENIQ-NSIKYIMLNPSSKLKGEKDWQKYEVA 516
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTL 690
R+LK+ + IR Y D+ SR+ +RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L
Sbjct: 517 RRLKEVVDKIRFQYRFDWKSREMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSL 576
Query: 691 KVGNVECI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDK 745
+V +++ + ++FDFLGKDSI+Y N V VE PV+K + F K D+LFD+
Sbjct: 577 RVEHIQLHRELDGQEHIVEFDFLGKDSIRYYNKVPVEKPVFKNLQLFMENKDPGDELFDR 636
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVA 804
L T+ LN HL++LM GLTAKVFRTYNASITL L T + +VA KI Y RAN+ VA
Sbjct: 637 LTTSTLNKHLQDLMDGLTAKVFRTYNASITLQEQLKVLTNAEDNVAAKILSYNRANRAVA 696
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
I+CNHQR KT M L KI+ K L + +L RAK +D K ++++
Sbjct: 697 ILCNHQRATPKTFEKSMQNLQTKIDAKKEQLAVAKQELKRAK---------ADAKVRKSV 747
Query: 865 APEA-LERKMAQTNAKIEKMER---DMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
++ +++K E++ R KE+ K VALGTSK+NYLDPRI++AWCK+ V
Sbjct: 748 KSKSNVDKKKKLLAKLEEQLMRLCTQATDKEENKQVALGTSKLNYLDPRISIAWCKKFGV 807
Query: 921 PIEKIFNKSLLAKFAWAMDV-DPEFRF 946
P+EKI+NK+ KFAWA+D+ D EF F
Sbjct: 808 PVEKIYNKTQREKFAWAIDMADEEFEF 834
>gi|453085697|gb|EMF13740.1| topoisomerase I [Mycosphaerella populorum SO2202]
Length = 898
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/642 (43%), Positives = 380/642 (59%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPP Y LP V+M+Y G V L + EE+A F ML++
Sbjct: 259 PQKGDGTIKWTTLEHNGVVFPPEYEPLPKNVQMIYDGTPVTLHKDAEEIAHAFGSMLNST 318
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ D++++L GK I E CDFKPI++ +++ KK
Sbjct: 319 HNVENPTFQKNFFADFKEMLDKTGHGKDRDGKQVKILKFEKCDFKPIFNHVDAERQAKKA 378
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKK LK EK++ E Y + DG K+KVGNFRVEPPGLFRGRGEHPK GK KKR+
Sbjct: 379 LPAAEKKRLKAEKDEAEAPYQYCKWDGRKQKVGNFRVEPPGLFRGRGEHPKTGKFKKRVL 438
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD +P P G +WKEVK+D TWLA W + IN +KYV LAA+S +K
Sbjct: 439 PEQITINIGKDAMVP-VPPEGHTWKEVKNDQEGTWLAMWQENINGA-YKYVMLAANSDIK 496
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K+ S RQ A ATYLID+ ALRAGNEK DD
Sbjct: 497 GQSDYKKFEKARELKKHIDRIRKDYEKELKSEVMANRQRATATYLIDRFALRAGNEKGDD 556
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-QTGKKQN 739
EADTVGCC+LK NV PPNK+ FDFLGKDSI++ + V+V+ V+K + F ++ KK+
Sbjct: 557 EADTVGCCSLKFENVTLKPPNKVIFDFLGKDSIRFYDEVDVDAQVFKNLKIFKRSPKKEG 616
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L +G VA K+ Y A
Sbjct: 617 DEIFDRLTTSGLNKHLSNYMTGLTAKVFRTYNASFTMATLLKDMKAEGTVADKVLAYNAA 676
Query: 800 NKEVAIICN--------HQRTVSKTHS------AQMSRLTEKIEDLKGVLKDLR------ 839
N++VAI+CN H++ + K Q R+ + DL+ LK +
Sbjct: 677 NRKVAILCNHKRTVAASHEQQMEKMEDKINGLRYQQCRIKRMMLDLEPKLKKKKGEGFFA 736
Query: 840 ----VDLDRAKKGKPPLMKDSDGK---------------RKRNLAPEALERKMAQT---- 876
+D + +K L+++S K ++ + P+ LE ++
Sbjct: 737 LPDGLDAEWQEKHHAALVEESKTKITKKFEKENEKLAAEGEKEMKPKELEERLQPMRELE 796
Query: 877 -----------------NAKIEKMERDMKT--------------KEDLKTVALGTSKINY 905
+A IEK E+D++ +++ K VALGTSKINY
Sbjct: 797 KKLKKELKTGKVEAEGKSASIEKYEKDIEKLDTRIATLQTQAEDRDNNKEVALGTSKINY 856
Query: 906 LDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+DPR+TV + K+ +VPIE+ F+K+L KF WA+ VD ++ F
Sbjct: 857 IDPRLTVVFSKKFDVPIERFFSKTLREKFDWAIKSVDEDWEF 898
>gi|405964124|gb|EKC29641.1| DNA topoisomerase 1 [Crassostrea gigas]
Length = 938
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 269/566 (47%), Positives = 355/566 (62%), Gaps = 37/566 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F P Y LP+ VK Y GK V L+ EEVAT +A MLD DY K F
Sbjct: 389 KWNFLEHKGPLFAPDYEPLPNDVKFYYDGKVVKLSEPAEEVATFYARMLDHDYTTKDVFN 448
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF DW+K++ + +I++L+ C+FK + ++ + + E++K S EEKKA K ++ +
Sbjct: 449 NNFTKDWKKMMTTSERELIRDLKKCNFKEMAEYFKLKSEERKNRSKEEKKAEKLNNDEIQ 508
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++DG KEK+GNF++EPPGLFRGRG+HPK G LK+R QP D+ IN K +P
Sbjct: 509 KEYGFCLMDGHKEKIGNFKIEPPGLFRGRGDHPKQGMLKRRTQPEDVIINCSKTAKVP-S 567
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN V+WLA WN+ I KYV L A+S LKG+ D +KYE AR+L
Sbjct: 568 PPPGHKWKEVRHDNKVSWLACWNENIQGST-KYVMLNAASRLKGEKDWQKYETARRLHKC 626
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+ ++
Sbjct: 627 VDKIRAQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRKEHLT 686
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+ ++FDFLGKDSI+Y N + VE V+K + F K DD+FD+L+T L
Sbjct: 687 LHEKYEDQEYVVEFDFLGKDSIRYYNRMPVEKRVFKNLQLFMDNKAGEDDVFDRLNTTIL 746
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL ELM GLTAKVFRTYNAS TL LN T D +V K+ Y RAN+ VA++CNHQ
Sbjct: 747 NKHLHELMDGLTAKVFRTYNASRTLQEQLNLLTEADDNVPSKLLSYNRANRAVAVLCNHQ 806
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGV-------LKDLRVDLDRAK--KGKPPLMKDSDGKRK 861
R K S QM L KI+D K +KD + D K K K L K
Sbjct: 807 RAAPKNFSKQMENLQNKIDDKKAAIKEAKKNVKDAKADYKATKTEKAKQALT-------K 859
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R + LE ++ K+E KE+ K +ALGTSK+NYLDPRI+VAWCK+ EVP
Sbjct: 860 RKTQQQRLEEQLT-------KLEVQATDKEENKEIALGTSKLNYLDPRISVAWCKKWEVP 912
Query: 922 IEKIFNKSLLAKFAWAMDV-DPEFRF 946
IEKI+NK+ KF WA+D+ + +F F
Sbjct: 913 IEKIYNKTQREKFRWAIDMAEADFEF 938
>gi|350582870|ref|XP_003125998.3| PREDICTED: DNA topoisomerase I, mitochondrial [Sus scrofa]
Length = 542
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 258/543 (47%), Positives = 348/543 (64%), Gaps = 17/543 (3%)
Query: 414 PPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--G 471
P +P V + GK + L+ EEVAT + ML+ +Y K FR NF+ DWRK +
Sbjct: 7 PRLSMPFLVGKSFFGKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAA 66
Query: 472 KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
+ VI+ L CDF I+ ++ ++ + EEK+ LKEE K ++++ + I+DG +EK
Sbjct: 67 ERKVIKRLSKCDFTEIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREK 126
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+TIN G+D +PE P G WKEV+ D
Sbjct: 127 IGNFKTEPPGLFRGRGDHPKMGMLKRRVLPEDVTINCGRDSKVPE-PPAGHQWKEVRSDR 185
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
TVTWLA W + + KYV L SS LKG+ D EKYE AR+LK + IR+ Y D+ S
Sbjct: 186 TVTWLAAWTENVQNAT-KYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKS 244
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIP-----PNKLKF 705
R+ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +V+ P P ++F
Sbjct: 245 REMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEF 304
Query: 706 DFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
DFLGKDSI+Y N V VE PVY+ + F K ++LFD+L TA LN HL++LM GLTAK
Sbjct: 305 DFLGKDSIRYYNKVPVEKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAK 364
Query: 766 VFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRL 824
VFRTYNASITL G L T + +A K+ Y RAN+ VA++CNHQR KT M L
Sbjct: 365 VFRTYNASITLQGQLRALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQAL 424
Query: 825 TEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKME 884
KIE K + + + +L++A+ G DG+ + L E R++ + ++ ++
Sbjct: 425 RSKIEAKKQQVAEAKAELEKARAGHAS---REDGRSEAFL--EKRRRRLEKLEEQLVRLG 479
Query: 885 RDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE- 943
KE+ K VALGTSK+NYLDPRI++AWC+R VP+EKI+NK+ KFAWA+D+ E
Sbjct: 480 TQATDKEEGKQVALGTSKLNYLDPRISIAWCRRFGVPVEKIYNKTQREKFAWALDMAGED 539
Query: 944 FRF 946
F F
Sbjct: 540 FEF 542
>gi|410920491|ref|XP_003973717.1| PREDICTED: DNA topoisomerase 1-like [Takifugu rubripes]
gi|15723146|emb|CAA23016.1| topoisomerase I beta [Takifugu rubripes]
Length = 753
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 269/561 (47%), Positives = 353/561 (62%), Gaps = 29/561 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK L EEVAT FA MLD +Y K FR
Sbjct: 204 KWKFLEHKGPVFAPPYEPLPSNVKFYYDGKAFMLRAGAEEVATFFAKMLDHEYTTKDVFR 263
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L+ CDF ++ + + Q E +K M+ EEK +KEE +
Sbjct: 264 KNFFKDWRKEMTSEEKAKITDLKKCDFSEMHQYFKAQSEARKAMTKEEKLKIKEENERLL 323
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD PE
Sbjct: 324 QQYGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPQDIIINCSKDSKYPEP 383
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 384 P-PGTKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 441
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 442 VDRIRNQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 501
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 502 LYPEIDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKEPDDDLFDRLNTSIL 561
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L + T + ++ KI Y RAN+ VAI+CNHQ
Sbjct: 562 NKHLQELMDGLTAKVFRTYNASITLQAQLKELTSAEENIPAKILSYNRANRAVAILCNHQ 621
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L + +L AK +D K +R+ +
Sbjct: 622 RAPPKTFEKSMQNLQTKIDAKKAQLSAAKRELKSAK---------ADAKVRRDEKSKKAV 672
Query: 871 RKMAQTNAKIE----KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+ +I+ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+ +P+EKI+
Sbjct: 673 EAKKKAVQRIDDQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPVEKIY 732
Query: 927 NKSLLAKFAWAMDV---DPEF 944
NK+ KFAWA+D+ D EF
Sbjct: 733 NKTQREKFAWAIDMAEDDYEF 753
>gi|47221872|emb|CAF98884.1| unnamed protein product [Tetraodon nigroviridis]
Length = 622
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/585 (47%), Positives = 354/585 (60%), Gaps = 57/585 (9%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H+G FPP Y LP V Y GK+V L+ EEVA FA MLD +Y K FR
Sbjct: 42 KWRFLEHSGPYFPPEYQPLPDHVNFYYDGKKVKLSLAAEEVALFFAQMLDHEYTTKKVFR 101
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEK--------KAL 509
ENF+ DWRK + + +IQ L+ CDF I+ H+ + E +K MS EEK K L
Sbjct: 102 ENFFQDWRKEMTDEERSLIQELDKCDFGEIHAMHKAKVEARKNMSKEEKLVCNIQFRKVL 161
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
KE K ++Y + ++D +E++GNF++EPPGLFRGRGEHPK GKLKKRIQP D+ IN
Sbjct: 162 KEANQKILDEYGYCLLDHHRERIGNFKIEPPGLFRGRGEHPKQGKLKKRIQPEDVIINCS 221
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ IP P G WKEV+HDNTVTWLA W + I KY+ L A+S LKG+ D EKYE
Sbjct: 222 KESRIP-VPPAGHRWKEVRHDNTVTWLASWTENIQGS-IKYIMLNANSKLKGEKDWEKYE 279
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLID---------KLALRAGNEKDDD 680
ARKLK + +IR Y D SR+ RQ AVA Y ID KLALRAGNEK++
Sbjct: 280 VARKLKSCVDNIRNQYLMDLKSREMCTRQRAVALYFIDKVGVTVVILKLALRAGNEKEEG 339
Query: 681 E-ADTVGCCTLKVGNV---------ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIG 730
E ADTVGCC+L+V ++ EC+ ++FDFLGKDSI+Y N V V V+K +
Sbjct: 340 ETADTVGCCSLRVEHITLHDTLDASECV----VEFDFLGKDSIRYYNKVPVIKKVFKNLK 395
Query: 731 QFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG----- 785
F K+ D+LFD+L+T+ LN HL LMPGLTAKVFRTYNASITL L + T
Sbjct: 396 LFMEDKQPGDELFDRLNTSLLNKHLSSLMPGLTAKVFRTYNASITLQQQLKELTNVIILF 455
Query: 786 --------DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
VA K+ Y RAN+ VAI+CNHQR KT M+ L KIE K L
Sbjct: 456 FFPCRLPESDSVAEKLLSYNRANRAVAILCNHQRAPPKTFDQSMANLQSKIEARKEQLV- 514
Query: 838 LRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMA--QTNAKIEKMERDMKTKEDLKT 895
L +++ + + G L + +KMA + ++ K+E +E+ K
Sbjct: 515 ----LAKSELKQAKKEAKAKGSADAKLQALVVRKKMAVKRCEEQLLKLEVQATDREENKQ 570
Query: 896 VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV 940
+ALGTSK+NYLDPRI+VAWCK+ EVP++KI+NKS KFAWA+D+
Sbjct: 571 IALGTSKLNYLDPRISVAWCKKMEVPVDKIYNKSQRDKFAWAIDM 615
>gi|307574648|ref|NP_001182621.1| topoisomerase (DNA) I, gene 2 [Xenopus (Silurana) tropicalis]
Length = 775
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 265/557 (47%), Positives = 355/557 (63%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVA+ FA MLD +Y K FR
Sbjct: 226 KWKFLEHEGPVFAPPYEPLPDSVKFYYDGKPLPLSLQAEEVASFFAKMLDHEYTTKEIFR 285
Query: 460 ENFWNDWRK--LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
N++ DWRK L + VI +L CDF ++ +++ + E+KK S E+K +KEE K
Sbjct: 286 NNYFMDWRKEMTLEERMVITDLAKCDFTEMFTYYKGKMEEKKNKSKEDKLKIKEENEKLL 345
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +D +E++GNF++EPP LFRGRG+HPK G LKKRI P DI IN KD IPE
Sbjct: 346 QEYGYCSMDHHRERIGNFKIEPPALFRGRGDHPKQGMLKKRILPEDIIINCSKDSKIPEP 405
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + KY+ L A+S LKG+ D EKYE ARKLK +
Sbjct: 406 P-PGHKWKEVRHDNTVTWLASWTENVQGS-VKYIMLNANSKLKGEKDWEKYEVARKLKHH 463
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ +IR Y ++F S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 464 VVTIRKTYRENFKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 523
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K++ DDLFD+L T L
Sbjct: 524 LYPELDGDKYVVEFDFLGKDSIRYYNKVPVEKQVFKNLQLFMENKQEGDDLFDRLSTPLL 583
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ LM GLTAKVFRTYNASITL L + T + + KI Y RAN+ VAI+CNHQ
Sbjct: 584 NKHLQSLMEGLTAKVFRTYNASITLQQQLQELTDPEESMPSKILSYNRANRAVAILCNHQ 643
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M+ L KI+ K ++ L + + + K N E+ +
Sbjct: 644 RAPPKTFDQSMANLKSKID-----AKKEQILLAKKELKEAKKEAKEKESEKLNKVVESKK 698
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ +ME +E+ K +AL TSK+NYLDPRI+VAWCK+ V +EKI+NK+
Sbjct: 699 RGVQRAEEQLMRMEVQATDREENKQIALSTSKLNYLDPRISVAWCKKWTVGLEKIYNKTY 758
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ + +F F
Sbjct: 759 RDKFAWAVDMTETDFIF 775
>gi|50657345|ref|NP_082680.1| DNA topoisomerase I, mitochondrial [Mus musculus]
gi|81871438|sp|Q8R4U6.1|TOP1M_MOUSE RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|19880190|gb|AAM00270.1|AF362952_1 DNA topoisomerase I [Mus musculus]
gi|74151135|dbj|BAE27691.1| unnamed protein product [Mus musculus]
gi|148697536|gb|EDL29483.1| DNA topoisomerase 1, mitochondrial [Mus musculus]
gi|187951989|gb|AAI38583.1| DNA topoisomerase 1, mitochondrial [Mus musculus]
gi|187953975|gb|AAI38584.1| DNA topoisomerase 1, mitochondrial [Mus musculus]
Length = 593
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 259/557 (46%), Positives = 349/557 (62%), Gaps = 20/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV LY GK + L+ EEVAT + ML + K FR
Sbjct: 45 KWRQLEHKGPYFTPAYEPLPDGVHFLYDGKPLKLSLAAEEVATFYGKMLHLECTSKEVFR 104
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWRK + + +I +L+ CDF I+ E+ E ++ + E+K+ LKEE K +
Sbjct: 105 RNFFSDWRKEMTPEERRLITHLDKCDFTEIHKHFLERAEARRTLPREQKQKLKEEAEKLQ 164
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IPE
Sbjct: 165 QEFGYCVLDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPE- 223
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I FKYV L SS KG+ D +KYE AR+LK
Sbjct: 224 PPAGHQWKEVRSDNTVMWLAAWVEHIQ-NSFKYVILNPSSKPKGEMDWQKYEVARRLKGV 282
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y D+ S + +RQ+AVA Y IDKLALR GNEK++ E ADTVGCC+L+V ++
Sbjct: 283 VDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIR 342
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++ DFLGKDSI+Y N V VE V++ + F K DDLFD L T+ L
Sbjct: 343 LHAPAGGQEHVVELDFLGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSL 402
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNAS+TL L T + V K+ Y RAN+ VA++CNHQ
Sbjct: 403 NKHLQDLMEGLTAKVFRTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQ 462
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R V KT M L +KIE K + + +V+L +K + L D K K L +
Sbjct: 463 RAVPKTFEKSMQTLQKKIETKKAQVAEAQVEL---QKAETDLRMRGDSKPKSFLQK---Q 516
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R++ + ++ ++ KE+ K VALGT+K+NYLDPRI++AWCKR VP+EKI+NK+
Sbjct: 517 RRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYLDPRISIAWCKRFGVPVEKIYNKTQ 576
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA + E F F
Sbjct: 577 RERFAWAFNQAGEDFEF 593
>gi|32264964|gb|AAP78904.1| type IB DNA topoisomerase large subunit [Trypanosoma brucei]
gi|261327436|emb|CBH10411.1| DNA topoisomerase IB, large subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 696
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/444 (52%), Positives = 307/444 (69%), Gaps = 7/444 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+K+W TL+HNGV+FPP Y+PHG+ +LY ++ +TPE+EEVATMFAV+ + DY + F
Sbjct: 105 GEKRWDTLLHNGVLFPPAYVPHGIPILYNQQKFEMTPEEEEVATMFAVLREHDYYRNEVF 164
Query: 459 RENFWNDWRKLLGKN-HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF IY+WHQ + EK+K + EEKK LK +++
Sbjct: 165 RRNFFQSWREILDKRKHPIRCLELCDFSAIYEWHQREVEKRKSRTREEKKELKRIADEEA 224
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y W I +G KE+V NFRVEPPGLFRGRGEHP GKLKKRI P D+ +NIGK+ PIP+
Sbjct: 225 EPYKWCIWNGKKEQVANFRVEPPGLFRGRGEHPMRGKLKKRILPEDVVLNIGKEAPIPQA 284
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WK V HD VTWLA W +P + KYV LA SS+LKGQSD K+E AR+LK++
Sbjct: 285 P-AGHKWKGVVHDQNVTWLAMWYEP-TIGQCKYVMLAPSSTLKGQSDYAKFETARELKNH 342
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR +YTKDF S D RQ AVATY IDKLALR G+EK ++EADTVGCC+L+ ++E
Sbjct: 343 IDDIRESYTKDFSSTDEMERQRAVATYFIDKLALRVGHEKGEEEADTVGCCSLRKEHIEL 402
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
P N ++FDFLGKDSI+YVN V V VYK +G F K+ + ++F K+ LN +LK
Sbjct: 403 RPDNVVRFDFLGKDSIRYVNEVTVLPEVYKLLGSFI--KRTDSEIFRKVTPTTLNNYLKS 460
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
+ L+AKVFRTYNASITLD + D ++ K+ + +AN EVA +CNHQR++ K
Sbjct: 461 FLKDLSAKVFRTYNASITLDEWFREKPVDPKASLSDKLVYFNKANTEVAKLCNHQRSIPK 520
Query: 816 THSAQMSRLTEKIEDLKGVLKDLR 839
T + + K+ED+K + LR
Sbjct: 521 TFHVSVQSIKYKLEDIKRTIDTLR 544
>gi|196011882|ref|XP_002115804.1| hypothetical protein TRIADDRAFT_30199 [Trichoplax adhaerens]
gi|190581580|gb|EDV21656.1| hypothetical protein TRIADDRAFT_30199, partial [Trichoplax
adhaerens]
Length = 560
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 269/565 (47%), Positives = 366/565 (64%), Gaps = 30/565 (5%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
+ D KW TL H G + PPY LP V+ Y G+ L+ + EE A +A MLD DY
Sbjct: 5 TKDNSVKWKTLEHKGPLLAPPYERLPSNVQFYYDGQTFPLSDKTEEAAGFYAKMLDHDYT 64
Query: 454 QKPKFRENFWNDWRKLLG---KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
QK F +NFW D+RK + KNH I+ CDF I ++++ + E+++ MS EEK LK
Sbjct: 65 QKKIFNDNFWTDFRKEMTPAEKNH-IKVFSKCDFSKIAEYYKMKAEERRNMSKEEKNKLK 123
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
+E + ++Y + I+DG +++VGNF++EPPGLFRGRG+HPK GK+K+RI+ DI INIGK
Sbjct: 124 KENEELMQEYGFCIIDGHRQRVGNFKIEPPGLFRGRGDHPKQGKIKRRIEAKDIIINIGK 183
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D +P P PG+ WKEV++DN VTWLA W + IN KY+ L +S +K + D +KYE
Sbjct: 184 DAKLP-APPPGQKWKEVRYDNKVTWLASWTENING-SIKYIMLNPTSKIKAEKDYQKYET 241
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCT 689
ARKLK YI IR Y D+ S++ RQ + A Y ID+LALRAG+EK++ E ADTVGCC+
Sbjct: 242 ARKLKRYIDKIRQDYKADWKSKEMRIRQRSAALYFIDRLALRAGHEKEEGESADTVGCCS 301
Query: 690 LKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
L+ +++ N ++FDFLGKDSI+YVN V VE VYK + F KK+ DDLFD
Sbjct: 302 LRYEHIKLHDQLEDKMNVVEFDFLGKDSIRYVNQVPVEKQVYKNLKLFCKNKKKGDDLFD 361
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKE 802
+L T LN +L ELM GLTAKVFRTYNAS TL L++ D +++ KI +Y R+N+
Sbjct: 362 RLSTTSLNKYLSELMEGLTAKVFRTYNASYTLQEQLHQ-VIDPKMSIEDKILIYNRSNRA 420
Query: 803 VAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKR 862
VAI+CNHQRTVSKT QMS L EKIE + LK+ + + RAK SD K ++
Sbjct: 421 VAILCNHQRTVSKTFDKQMSNLREKIEKKEQQLKEAKKEEKRAK---------SDLKERK 471
Query: 863 NLAPEALERKMA----QTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
+ + + L K N ++ K+ K + K VAL TSK+NY+DPRI+VAWCK++
Sbjct: 472 DESSKKLYEKRKKKTEMLNRQLHKLNLTETDKVENKEVALSTSKLNYMDPRISVAWCKKN 531
Query: 919 EVPIEKIFNKSLLAKFAWAMDVDPE 943
EVP+EK+FNK+ KF WA+++ E
Sbjct: 532 EVPVEKVFNKTQREKFKWAIEMASE 556
>gi|303322999|ref|XP_003071491.1| DNA topoisomerase I, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111193|gb|EER29346.1| DNA topoisomerase I, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 905
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 298/747 (39%), Positives = 420/747 (56%), Gaps = 68/747 (9%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
++ EDDKPLS R + ++KN + + DSDD PL SR S
Sbjct: 94 ESSEEDDKPLSKRRRTSTKN-------------------RVEDSDSDD-APLLSR---ST 130
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ----QKSSSVPVKRPLQKASSSGASSAK 309
P ++EK+ LA K + E + + K+P+ KA+ A SA+
Sbjct: 131 RAQKLPAPTAAEEKELLAEKAEIEHRAEIEAKAIRKHEREDAAKKKPVGKAAK--APSAR 188
Query: 310 KPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSS 369
+P ++ + T ++K D+ +P+ ++ + A KS T T A K +
Sbjct: 189 QP----AKQKPAAGKRTNGIKKSESSDEDLPLRRKPRAKAAKPAKSGTTTP-AIKGEDKA 243
Query: 370 SNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYK 427
K + +V + P GDG KWTTL HNGV+FPPPY LP VKM Y
Sbjct: 244 --KQESEEAEVEAEEEEEYRWWEEPTKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMKYD 301
Query: 428 GKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVI 476
G ++L P+ EEVA F ML++ + ++ P F++NF+ D+ ++ G +I
Sbjct: 302 GVPISLEPDAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKDSQGNKVLI 361
Query: 477 QNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFR 536
++ + CDF+PI+++++ ++E+KK + + E+K LK EK E YM+ + DG K+KVGNFR
Sbjct: 362 KDFKKCDFRPIFEYYEMKREEKKALPAAERKRLKVEKEAAEAPYMYCMWDGRKQKVGNFR 421
Query: 537 VEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWL 596
VEPP LFRGRGEHPK G++K R+QP ITINIGK +P P G WKEVKHD TWL
Sbjct: 422 VEPPALFRGRGEHPKTGRVKTRVQPEQITINIGKGAAVPPPPA-GHKWKEVKHDQEGTWL 480
Query: 597 AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTR 656
A W + IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K
Sbjct: 481 AMWQENIN-GNYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKGLKDELMAN 539
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYV 716
RQ A A YLID+ ALRAGNEK +DEADTVGCC+LK +V PPNK+ FDFLGKDSI++
Sbjct: 540 RQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKPPNKVIFDFLGKDSIRFY 599
Query: 717 NTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASIT 775
+ VEV+ V+K + F+ KK D++FD+L T+ LN HL M GLTAKVFRTYNAS T
Sbjct: 600 DEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSALNKHLSGYMAGLTAKVFRTYNASYT 659
Query: 776 LDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---K 832
+ +L + G + K+ Y AN++VAI+CNH+RTV+ H+ QM +L E+I+ L K
Sbjct: 660 MATLLRQMNATGTIHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLGERIKGLRYQK 719
Query: 833 GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM----- 887
+K + +DLD P +K G L P+ E + Q A + + +R
Sbjct: 720 WRIKQMMLDLD-------PKIKKKKGAEFFELDPDLDEEWIKQHQAFLVEEQRQKIQKKF 772
Query: 888 -KTKEDLKTVALGTSKINYLDPRITVA 913
K E L+ K+ L+ R+ VA
Sbjct: 773 DKDNEKLRAEGEKEMKVKELEKRLEVA 799
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E E +A+ + +I+ M + KED K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 825 EKYENNLAKLDQRIDTMSLQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFSVPIEKFF 884
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 885 SKTLREKFDWAIKSVDENWEF 905
>gi|326676003|ref|XP_002665372.2| PREDICTED: DNA topoisomerase 1 [Danio rerio]
Length = 735
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/554 (48%), Positives = 349/554 (62%), Gaps = 26/554 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G FPP Y LP VK Y G+ V L+ EEVA FA MLD +Y K FR
Sbjct: 186 KWKFLEHKGPYFPPAYQPLPDDVKFYYNGEPVKLSLPAEEVALYFAQMLDHEYTTKEVFR 245
Query: 460 ENFWNDWRK--LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK L + +I +L+ CDF ++ H+E+ E +K +S EEK KE K
Sbjct: 246 NNFFKDWRKEMTLEERQLIMDLKKCDFGELHAMHKEKVEARKNLSKEEKLVNKEANQKIV 305
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++GNF++EPPGLFRGRG+HPK G LKKRI+P D+ IN K+ IPE
Sbjct: 306 DEYGFCVLDHHRERIGNFKIEPPGLFRGRGDHPKQGMLKKRIRPEDVIINCSKESRIPEA 365
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD TVTWLA W + + KYV L A+S LKG+ D EKYE ARKLK
Sbjct: 366 P-AGHKWKEVRHDKTVTWLASWTENVQGS-CKYVMLNANSKLKGEKDWEKYEVARKLKTC 423
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV- 695
+ +IR Y +D S+ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 424 VDAIRTQYQEDLKSKQMGTRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIT 483
Query: 696 --------ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+C+ ++FDFLGKD I+Y N V V V+K + F K+ DDLFD+L+
Sbjct: 484 LHDALDDQKCV----VEFDFLGKDCIRYYNKVPVTKRVFKNLKLFMENKQGGDDLFDRLN 539
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAII 806
TA LN HL LMPGLTAKVFRTYNASITL L + + D V K+ Y RAN+ VA++
Sbjct: 540 TASLNKHLSSLMPGLTAKVFRTYNASITLQQQLKELSNMKDNVPEKLLSYNRANRAVAVL 599
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP 866
CNHQR K+ M+ L KI+ K L + +L +AKK + D+
Sbjct: 600 CNHQRAPPKSFDQSMANLQAKIDSRKEQLDLAKKELKQAKK-EAKGSSDNKLLVVVEKKK 658
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+A++R ++ KME +E+ K +AL TSK+NYLDPRI+VAWCK EVP++KI+
Sbjct: 659 KAVQR----CEEQLLKMEVQATDREENKQIALSTSKLNYLDPRISVAWCKNMEVPLDKIY 714
Query: 927 NKSLLAKFAWAMDV 940
NK+L KFAWA+D+
Sbjct: 715 NKTLRDKFAWAVDM 728
>gi|72387718|ref|XP_844283.1| DNA topoisomerase IB, large subunit [Trypanosoma brucei TREU927]
gi|62359435|gb|AAX79872.1| DNA topoisomerase IB, large subunit [Trypanosoma brucei]
gi|70800816|gb|AAZ10724.1| DNA topoisomerase IB, large subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 661
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/444 (52%), Positives = 307/444 (69%), Gaps = 7/444 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+K+W TL+HNGV+FPP Y+PHG+ +LY ++ +TPE+EEVATMFAV+ + DY + F
Sbjct: 70 GEKRWDTLLHNGVLFPPAYVPHGIPILYNQQKFEMTPEEEEVATMFAVLREHDYYRNEVF 129
Query: 459 RENFWNDWRKLLGKN-HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF IY+WHQ + EK+K + EEKK LK +++
Sbjct: 130 RRNFFQSWREILDKRKHPIRCLELCDFSAIYEWHQREVEKRKSRTREEKKELKRIADEEA 189
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y W I +G KE+V NFRVEPPGLFRGRGEHP GKLKKRI P D+ +NIGK+ PIP+
Sbjct: 190 EPYKWCIWNGKKEQVANFRVEPPGLFRGRGEHPMRGKLKKRILPEDVVLNIGKEAPIPQA 249
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WK V HD VTWLA W +P + KYV LA SS+LKGQSD K+E AR+LK++
Sbjct: 250 P-AGHKWKGVVHDQNVTWLAMWYEP-TIGQCKYVMLAPSSTLKGQSDYAKFETARELKNH 307
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR +YTKDF S D RQ AVATY IDKLALR G+EK ++EADTVGCC+L+ ++E
Sbjct: 308 IDDIRESYTKDFSSTDEMERQRAVATYFIDKLALRVGHEKGEEEADTVGCCSLRKEHIEL 367
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
P N ++FDFLGKDSI+YVN V V VYK +G F K+ + ++F K+ LN +LK
Sbjct: 368 RPDNVVRFDFLGKDSIRYVNEVTVLPEVYKLLGSFI--KRTDSEIFRKVTPTTLNNYLKS 425
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
+ L+AKVFRTYNASITLD + D ++ K+ + +AN EVA +CNHQR++ K
Sbjct: 426 FLKDLSAKVFRTYNASITLDEWFREKPVDPKASLSDKLVYFNKANTEVAKLCNHQRSIPK 485
Query: 816 THSAQMSRLTEKIEDLKGVLKDLR 839
T + + K+ED+K + LR
Sbjct: 486 TFHVSVQSIKYKLEDIKRTIDTLR 509
>gi|50657355|ref|NP_001002798.1| DNA topoisomerase I, mitochondrial [Rattus norvegicus]
gi|81872302|sp|Q6IM78.1|TOP1M_RAT RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|47131152|tpg|DAA02296.1| TPA_exp: mitochondrial DNA topoisomerase I [Rattus norvegicus]
gi|149066185|gb|EDM16058.1| DNA topoisomerase I, mitochondrial [Rattus norvegicus]
Length = 593
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/585 (45%), Positives = 362/585 (61%), Gaps = 28/585 (4%)
Query: 377 TKKVIKNSQYSKSTKMLPGSGDGQK---KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEV 431
+++V + S+ S++ G G+ K KW L H G F P Y LP GV+ Y GK V
Sbjct: 22 SRQVSRGSKASRA-----GWGETSKSSVKWKQLEHKGPCFAPAYEPLPDGVRFFYDGKPV 76
Query: 432 NLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYD 489
L+ EEVAT + ML + K FR NF++DW+K + + +I +L+ CDF I+
Sbjct: 77 RLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFSEIHR 136
Query: 490 WHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 549
E+ E ++ + E+K+ LKEE K ++++ + I+DG +EK+GNF+ EPPGLFRGRG+H
Sbjct: 137 HFMERAEARRTLPREQKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDH 196
Query: 550 PKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFK 609
PKMG LK+R+ P D+ IN +D IPE P G WKEV+ DNTV WLA W + I FK
Sbjct: 197 PKMGMLKRRVMPEDVVINCSRDSKIPE-PPAGHQWKEVRSDNTVMWLAAWVENIQ-NSFK 254
Query: 610 YVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKL 669
Y+ L SS KG+ D +KYE AR+LK + IRA Y D+ S + +RQ+AVA Y IDKL
Sbjct: 255 YIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFIDKL 314
Query: 670 ALRAGNEKDDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVEL 723
ALR GNEK++ E ADTVGCC+L+V +V P + ++ DFLGKDSI+Y N V VE
Sbjct: 315 ALRTGNEKEEGETADTVGCCSLRVEHVRLHTPADGQEHVVELDFLGKDSIRYKNHVTVEK 374
Query: 724 PVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG 783
V++ + F K DDLFD L T+ LN HL++LM GLTAKVFRTYNASITL L
Sbjct: 375 LVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLRVL 434
Query: 784 T-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
T + + K+ Y RAN+ VA++CNHQR + KT M L +KIE K + + +V+L
Sbjct: 435 TRAEDSLTCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQVEL 494
Query: 843 DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSK 902
+K + L D K K L + K+ + A++ D KE+ K VALGT+K
Sbjct: 495 ---QKAETDLRMRGDSKSKSFLQKQQRLLKLEEQLARLCTKATD---KEENKQVALGTAK 548
Query: 903 INYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
+NYLDPRI++AWCKR VP+EKI+NK+ +FAWA + E F F
Sbjct: 549 LNYLDPRISIAWCKRFGVPVEKIYNKTQRERFAWAFNQAGEDFEF 593
>gi|5119|emb|CAA29559.1| topoisomerase I [Schizosaccharomyces pombe]
Length = 812
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 255/471 (54%), Positives = 327/471 (69%), Gaps = 12/471 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D +KWTTL HNGVIF PPY LP VK++Y G VNL PE EEVA +A ML+TD+ +
Sbjct: 188 DDTQKWTTLEHNGVIFAPPYEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKN 247
Query: 456 PKFRENFWNDWRKLLGK---NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
P F++NF+ D+ K+ + NH I+ CDF ++ ++++E+KK M E+KKA+KE+
Sbjct: 248 PVFQDNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKEK 307
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
K+++EEKY W I+DG KEKVGNFR+EPPGLFRGRG HPK G LK+R+ P ITINIG+ V
Sbjct: 308 KDEEEEKYKWCILDGRKEKVGNFRIEPPGLFRGRGSHPKTGSLKRRVYPEQITINIGEGV 367
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
P+PE P+PG W EVKHDNTVTWLA W++ IN KYVFLAA SSLKGQSD +KYEK+R
Sbjct: 368 PVPE-PLPGHQWAEVKHDNTVTWLATWHENIN-NNVKYVFLAAGSSLKGQSDLKKYEKSR 425
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLKDYI IR Y KD + RQ A YLID ALRAGNEK +DEADTVGCC+L+
Sbjct: 426 KLKDYIDDIRKGYRKDLKNELTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGCCSLRY 485
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLFDKLDTAKL 751
+V PP + FDFLGKDSI+Y N VEV+ V+K + F+ KK+ D +FD+L T L
Sbjct: 486 EHVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKRPPKKEGDLIFDRLSTNSL 545
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811
N +L LM GL+AKVFRTYNAS T+ L K + +A KI Y RAN+ VAI+CNHQR
Sbjct: 546 NKYLTSLMDGLSAKVFRTYNASYTMAEELKKMPKNLTLADKILFYNRANRTVAILCNHQR 605
Query: 812 TVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDG 858
+V+K H QM R E+I+ L + L+ + ++L+ + K KP L+ +G
Sbjct: 606 SVTKNHDVQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEG 656
>gi|320033421|gb|EFW15369.1| DNA topoisomerase 1 [Coccidioides posadasii str. Silveira]
Length = 905
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 298/747 (39%), Positives = 420/747 (56%), Gaps = 68/747 (9%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
++ EDDKPLS R + ++KN + + DSDD PL SR S
Sbjct: 94 ESSEEDDKPLSKRRRTSTKN-------------------RVEDSDSDD-APLLSR---ST 130
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ----QKSSSVPVKRPLQKASSSGASSAK 309
P ++EK+ LA K + E + + K+P+ KA+ A SA+
Sbjct: 131 RAQKLPAPTAAEEKELLAEKAEIEHRAEIEAKAIRKHEREDAAKKKPVGKAAK--APSAR 188
Query: 310 KPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSS 369
+P ++ + T ++K D+ +P+ ++ + A KS T T A K +
Sbjct: 189 QP----AKQKPAAGKRTNGIKKSESSDEDLPLRRKPRAKAAKPAKSGTTTP-AIKGEDKA 243
Query: 370 SNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYK 427
K + +V + P GDG KWTTL HNGV+FPPPY LP VKM Y
Sbjct: 244 --KQESEEAEVEAEEEEEYRWWEEPTKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMKYD 301
Query: 428 GKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVI 476
G ++L P+ EEVA F ML++ + ++ P F++NF+ D+ ++ G +I
Sbjct: 302 GVPISLEPDAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKDSQGNKVLI 361
Query: 477 QNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFR 536
++ + CDF+PI+++++ ++E+KK + + E+K LK EK E YM+ + DG K+KVGNFR
Sbjct: 362 KDFKKCDFRPIFEYYEMKREEKKALPAAERKRLKVEKEAAEAPYMYCMWDGRKQKVGNFR 421
Query: 537 VEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWL 596
VEPP LFRGRGEHPK G++K R+QP ITINIGK +P P G WKEVKHD TWL
Sbjct: 422 VEPPALFRGRGEHPKTGRVKTRVQPEQITINIGKGAAVPPPPA-GHKWKEVKHDQEGTWL 480
Query: 597 AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTR 656
A W + IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K
Sbjct: 481 AMWQENIN-GNYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKGLKDELMAN 539
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYV 716
RQ A A YLID+ ALRAGNEK +DEADTVGCC+LK +V PPNK+ FDFLGKDSI++
Sbjct: 540 RQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKPPNKVIFDFLGKDSIRFY 599
Query: 717 NTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASIT 775
+ VEV+ V+K + F+ KK D++FD+L T+ LN HL M GLTAKVFRTYNAS T
Sbjct: 600 DEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSALNKHLSGYMAGLTAKVFRTYNASYT 659
Query: 776 LDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---K 832
+ +L + G + K+ Y AN++VAI+CNH+RTV+ H+ QM +L E+I+ L K
Sbjct: 660 MATLLRQMNATGTIHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLGERIKGLRYQK 719
Query: 833 GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM----- 887
+K + +DLD P +K G L P+ E + Q A + + +R
Sbjct: 720 WRIKQMMLDLD-------PKIKMKKGAEFFELDPDLDEEWIKQHQAFLVEEQRQKIQKKF 772
Query: 888 -KTKEDLKTVALGTSKINYLDPRITVA 913
K E L+ K+ L+ R+ VA
Sbjct: 773 DKDNEKLRAEGEKEMKVKELEKRLEVA 799
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E E +A+ + +I+ M + KED K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 825 EKYENNLAKLDQRIDTMSLQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFSVPIEKFF 884
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 885 SKTLREKFDWAIKSVDENWEF 905
>gi|301606601|ref|XP_002932918.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Xenopus
(Silurana) tropicalis]
Length = 850
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/556 (48%), Positives = 353/556 (63%), Gaps = 30/556 (5%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y G V L+P+ EEVAT FA MLD +Y K FR
Sbjct: 262 KWKFLEHKGPVFAPPYEPLPDNVKFYYDGNLVKLSPKAEEVATFFAKMLDHEYTTKDIFR 321
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DW+K + + ++I NL CDF + + +EQ E +K M+ EEK+ +KEE +
Sbjct: 322 KNFFKDWKKEMTADERNLITNLGKCDFNAMSQYFKEQSEARKNMTKEEKQKIKEENERLL 381
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NFR+EPPGLFRGRG+HPKMGKLKKRI P DI IN KD P
Sbjct: 382 QEYGFCVMDNHRERIANFRIEPPGLFRGRGDHPKMGKLKKRIMPEDIIINCSKDSKYPVA 441
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 442 P-AGHKWKEVRHDGKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKMC 499
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 500 VEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 559
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
++FDF GKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 560 LFQELDGQEFVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPDDDLFDRLNTSIL 619
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL LN+ T GD +V KI Y RAN+ VAI+CNHQ
Sbjct: 620 NKHLQDLMEGLTAKVFRTYNASITLQQQLNELTNGDDNVPAKILSYNRANRAVAILCNHQ 679
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEAL- 869
R KT M L KI+ K L D R +L AK +D K KR+ + L
Sbjct: 680 RAPPKTFEKSMMNLQGKIDAKKDQLMDARRELKSAK---------ADAKVKRDEKSKKLV 730
Query: 870 ---ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
++ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK++ +PIEKI+
Sbjct: 731 ESKKKAVQRVEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKYGIPIEKIY 790
Query: 927 N----KSLLAKFAWAM 938
N KSLL W M
Sbjct: 791 NKTQRKSLLGPLIWRM 806
>gi|119189549|ref|XP_001245381.1| hypothetical protein CIMG_04822 [Coccidioides immitis RS]
gi|392868286|gb|EAS34053.2| topoisomerase I [Coccidioides immitis RS]
Length = 905
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 297/747 (39%), Positives = 419/747 (56%), Gaps = 68/747 (9%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN 253
++ EDDKPLS R + ++KN + + DSDD PL SR S
Sbjct: 94 ESSEEDDKPLSKRRRTSTKN-------------------RVEDSDSDD-APLLSR---ST 130
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ----QKSSSVPVKRPLQKASSSGASSAK 309
P ++EK+ LA K + E + + K+P+ K + A SA+
Sbjct: 131 RAQKLPAPTAAEEKELLAEKAEIEHRAEIEAKAIRKHEREDAAKKKPVGKGAK--APSAR 188
Query: 310 KPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSS 369
+P ++ + T ++K D+ +P+ ++ + A KS T T A K +
Sbjct: 189 QP----AKQKPAAGKRTNGIKKSESSDEDLPLRRKPRAKAAKPAKSGTTTP-AIKGEDKA 243
Query: 370 SNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYK 427
K + +V + P GDG KWTTL HNGV+FPPPY LP VKM Y
Sbjct: 244 --KQESEEAEVEAEEEEEYRWWEEPTKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMKYD 301
Query: 428 GKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVI 476
G ++L P+ EEVA F ML++ + ++ P F++NF+ D+ ++ G +I
Sbjct: 302 GVPISLEPDAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKDSQGNKVLI 361
Query: 477 QNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFR 536
++ + CDF+PI+++++ ++E+KK + + E+K LK EK E YM+ + DG K+KVGNFR
Sbjct: 362 KDFKKCDFRPIFEYYEMKREEKKALPAAERKRLKAEKEAAEAPYMYCMWDGRKQKVGNFR 421
Query: 537 VEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWL 596
VEPP LFRGRGEHPK G++K R+QP ITINIGK +P P G WKEVKHD TWL
Sbjct: 422 VEPPALFRGRGEHPKTGRVKIRVQPEQITINIGKGAAVPPPPA-GHKWKEVKHDQEGTWL 480
Query: 597 AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTR 656
A W + IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y K
Sbjct: 481 AMWQENIN-GNYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKGLKDELMAN 539
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYV 716
RQ A A YLID+ ALRAGNEK +DEADTVGCC+LK +V PPNK+ FDFLGKDSI++
Sbjct: 540 RQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKPPNKVIFDFLGKDSIRFY 599
Query: 717 NTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASIT 775
+ VEV+ V+K + F+ KK D++FD+L T+ LN HL M GLTAKVFRTYNAS T
Sbjct: 600 DEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSALNKHLSGYMAGLTAKVFRTYNASYT 659
Query: 776 LDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---K 832
+ +L + G + K+ Y AN++VAI+CNH+RTV+ H+ QM +L E+I+ L K
Sbjct: 660 MATLLRQMNATGTIHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLGERIKGLRYQK 719
Query: 833 GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM----- 887
+K + +DLD P +K G L P+ E + Q A + + +R
Sbjct: 720 WRIKQMMLDLD-------PKIKKKKGAEFFELDPDLDEEWIKQHQAFLVEEQRQKIQKKF 772
Query: 888 -KTKEDLKTVALGTSKINYLDPRITVA 913
K E L+ K+ L+ R+ VA
Sbjct: 773 DKDNEKLRAEGEKEMKVKELEKRLEVA 799
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E E +A+ + +I+ M + KED K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 825 EKYENNLAKLDQRIDTMSLQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFSVPIEKFF 884
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 885 SKTLREKFDWAIKSVDENWEF 905
>gi|68483489|ref|XP_714305.1| likely DNA topoisomerase I [Candida albicans SC5314]
gi|46435860|gb|EAK95233.1| likely DNA topoisomerase I [Candida albicans SC5314]
Length = 780
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/630 (44%), Positives = 379/630 (60%), Gaps = 82/630 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 153 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 212
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P F++NF+ND+ ++L G I+ E DF +Y ++ +E+KK MS EEKK +K
Sbjct: 213 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 272
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EEK K+EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+GK
Sbjct: 273 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVPEQVTLNLGK 332
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 333 DAKIPEPP-AGHQWGEIRHDNEVTWLAMWKENISD-SLKYVRFANNSSVKGQSDFKKFET 390
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 391 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 450
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 451 RYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 510
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 511 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 570
Query: 810 QRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDG------- 858
QRTVSKTH + R+ +K+++ K LK + + L+ + KK P ++ D
Sbjct: 571 QRTVSKTHGDSVQRINDKLKEFMWQKIRLKKMILQLEPKLKKKDPKYFEEIDDLIKEDIE 630
Query: 859 -------KRKRNLAPEALERK--------------------------------------- 872
KR+R A + LER
Sbjct: 631 HIHHTIIKRQREQAKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDELEKEYQKELKTGK 690
Query: 873 -MAQTNAKIEKMERDMKT--------------KEDLKTVALGTSKINYLDPRITVAWCKR 917
+ NA +EK+++ ++T KED V+LGTSK+NY+DPR+ V + K+
Sbjct: 691 PIVTKNATVEKLKQQIETLENKILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSKK 750
Query: 918 HEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 751 FDVPIEKLFTKTLREKFIWAIESADENWRF 780
>gi|398022638|ref|XP_003864481.1| DNA topoisomerase IB, large subunit [Leishmania donovani]
gi|322502716|emb|CBZ37799.1| DNA topoisomerase IB, large subunit [Leishmania donovani]
Length = 635
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/443 (54%), Positives = 308/443 (69%), Gaps = 5/443 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY WH Q+EKK + EEKKA+KE+++ +
Sbjct: 102 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ +P
Sbjct: 162 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVP-V 220
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLKD
Sbjct: 221 PPAGHKWAAVQHDHTVTWLAMWRDSV-AGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDK 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 280 VDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+P N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 340 MPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGTDIFDQLNPTQLNDHLKS 399
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + D A K+ + +AN EVAI+CNHQ++VSK
Sbjct: 400 FMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSK 459
Query: 816 THSAQMSRLTEKIEDLKGVLKDL 838
QM +LT K E + ++ L
Sbjct: 460 NFKLQMMQLTTKSEYTRKTIELL 482
>gi|68484053|ref|XP_714029.1| likely DNA topoisomerase I [Candida albicans SC5314]
gi|46435553|gb|EAK94932.1| likely DNA topoisomerase I [Candida albicans SC5314]
Length = 780
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/630 (44%), Positives = 379/630 (60%), Gaps = 82/630 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 153 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 212
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P F++NF+ND+ ++L G I+ E DF +Y ++ +E+KK MS EEKK +K
Sbjct: 213 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 272
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EEK K+EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+GK
Sbjct: 273 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVPEQVTLNLGK 332
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 333 DAKIPEPP-AGHQWGEIRHDNEVTWLAMWKENISD-SLKYVRFANNSSVKGQSDFKKFET 390
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 391 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 450
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 451 RYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 510
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 511 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 570
Query: 810 QRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDG------- 858
QRTVSKTH + R+ +K+++ K LK + + L+ + KK P ++ D
Sbjct: 571 QRTVSKTHGDSVQRINDKLKEFMWQKIRLKKMILQLEPKLKKKDPKYFEEIDDLIKEDIE 630
Query: 859 -------KRKRNLAPEALERK--------------------------------------- 872
KR+R A + LER
Sbjct: 631 HIHHTIIKRQREQAKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDELEKEYQKELKTGK 690
Query: 873 -MAQTNAKIEKMERDMKT--------------KEDLKTVALGTSKINYLDPRITVAWCKR 917
+ NA +EK+++ ++T KED V+LGTSK+NY+DPR+ V + K+
Sbjct: 691 PIVTKNATVEKLKQQIETLENKILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSKK 750
Query: 918 HEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 751 FDVPIEKLFTKTLREKFIWAIESADENWRF 780
>gi|401428835|ref|XP_003878900.1| DNA topoisomerase IB, large subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495149|emb|CBZ30453.1| DNA topoisomerase IB, large subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 637
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/436 (55%), Positives = 308/436 (70%), Gaps = 9/436 (2%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ +LY G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLAHNGVLFPPEYEPHGIPILYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY WH Q+EKK + EEKKA+KE+++ +
Sbjct: 102 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLNRTKEEKKAIKEKQDAEA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ E
Sbjct: 162 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGE---TAEA 218
Query: 578 PIP--GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
P+P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLK
Sbjct: 219 PVPPAGHKWAAVQHDHTVTWLAMWRDSV-AGNMKYVMLAPSSSVKGQSDMVKFEKARKLK 277
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
D + IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V ++
Sbjct: 278 DKVDDIRASYMEDFKSNDVHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHI 337
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHL 755
+ +P N ++FDFLGKDSI+Y N V V VY + +F K + D+FD+L+ +LN HL
Sbjct: 338 QLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPDMDIFDQLNPTQLNDHL 397
Query: 756 KELMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTV 813
K M GL+AKVFRTYNASITLD + D +A K+ + +AN EVAI+CNHQ++V
Sbjct: 398 KAFMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSIADKLAYFNKANTEVAILCNHQKSV 457
Query: 814 SKTHSAQMSRLTEKIE 829
SK QM +LT K E
Sbjct: 458 SKNFKLQMMQLTTKSE 473
>gi|393245001|gb|EJD52512.1| hypothetical protein AURDEDRAFT_111181 [Auricularia delicata
TFB-10046 SS5]
Length = 908
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 300/703 (42%), Positives = 398/703 (56%), Gaps = 94/703 (13%)
Query: 331 KKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKST 390
KKADDD+ P K+ A +VK T + K KK + + ++ +
Sbjct: 213 KKADDDEDKPKKAPRKSKAAAVKDEETEASVPPSPTKKGRGKKAKKEEDEEEVFKWWE-- 270
Query: 391 KMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML 448
L GDG +KW TL HNGV+FPPPY LP VKMLY GK V+L PE EEVA F +L
Sbjct: 271 --LEALGDGTQKWKTLDHNGVLFPPPYQPLPADVKMLYDGKPVDLPPESEEVALFFGQLL 328
Query: 449 DTDYMQKPKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMS 502
+D+ F++NF+ D+ +L K H I + CDF+ ++++H ++ +KK MS
Sbjct: 329 GSDHANDTTFQKNFFKDFTHVL-KVHPPRDGTRITSFNKCDFRQMFEFHDAERIRKKNMS 387
Query: 503 SEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPS 562
EEKKA KE K+K E Y ++DG KEK+GNFR+EPPGLFRGRGEHPK G LK R+ P
Sbjct: 388 GEEKKAAKEAKDKLEAPYTHCMLDGRKEKIGNFRIEPPGLFRGRGEHPKKGCLKTRVYPE 447
Query: 563 DITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQ 622
DITINIG+ V +PE IPG+ W +V HDNTVTWLA W + +N KYVFL+A SSLKGQ
Sbjct: 448 DITINIGEGVKVPEPSIPGK-WHKVIHDNTVTWLATWKENVNGNT-KYVFLSAGSSLKGQ 505
Query: 623 SDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA 682
SD K+EKAR+L Y+ +IR Y +D S+ RQ A A Y ID+LALRAGNEK +DEA
Sbjct: 506 SDMNKFEKARELAKYVDTIREDYERDLKSKVMADRQRATAMYFIDRLALRAGNEKGEDEA 565
Query: 683 DTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKK 737
DTVGCC+L+ +V + FDFLGKDSI+Y N VEV V+K I F+ K
Sbjct: 566 DTVGCCSLRCEHVTLERDTTDGKEYVVFDFLGKDSIRYYNRVEVTQQVFKNIRIFKGDSK 625
Query: 738 QNDD-LFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN-KGTGDGDVAVKIDV 795
++D LFD++ T+ LN HL+ M GLTAKVFRTYNAS+T+ +L+ + G+ +A KI
Sbjct: 626 TDEDALFDRVTTSSLNKHLQSYMKGLTAKVFRTYNASVTMQRLLDAQDLGNATIAEKIAA 685
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKD 855
Y AN+EVAI+CNHQR KTH A M +L EK++ +K LR L A+ K KD
Sbjct: 686 YTDANREVAILCNHQRAAPKTHDATMEKLGEKLKAMKYERMKLRHALFTAEPKKKKERKD 745
Query: 856 -----SD---------GKRKRNLAPEALERKMAQTNAKI--------------------- 880
SD +R + E E+K + N K+
Sbjct: 746 LTELESDIDDDWIEKHEDEQRRITLEKAEKKFMKDNEKLAAEGKEEHPDSVLKDKRKAIN 805
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDP------------RITV---------------- 912
E+ +R K + K+V G + L+ RIT+
Sbjct: 806 EEFDRLKKERGTGKSVPKGNKSADALENAIEKMDAKIKAFRITMNVRDTTKTVALGTSKI 865
Query: 913 ---------AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
AWCK+++VP+E++FNKSLL KF WAM D +++F
Sbjct: 866 NYLDPRITVAWCKKNDVPVERMFNKSLLVKFPWAMGADADWKF 908
>gi|146099576|ref|XP_001468679.1| DNA topoisomerase IB, large subunit [Leishmania infantum JPCM5]
gi|11863168|gb|AAG27713.2| DNA topoisomerase I [Leishmania infantum]
gi|134073047|emb|CAM71767.1| DNA topoisomerase IB, large subunit [Leishmania infantum JPCM5]
Length = 635
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/434 (55%), Positives = 304/434 (70%), Gaps = 5/434 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY WH Q+EKK + EEKKA+KE+++ +
Sbjct: 102 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ +P
Sbjct: 162 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVP-V 220
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLKD
Sbjct: 221 PPAGHKWAAVQHDHTVTWLAMWRDSV-AGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDK 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 280 VDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+P N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 340 MPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKS 399
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + D A K+ + +AN EVAI+CNHQ++VSK
Sbjct: 400 FMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSK 459
Query: 816 THSAQMSRLTEKIE 829
QM +LT K E
Sbjct: 460 NFKLQMMQLTTKSE 473
>gi|5305782|gb|AAD41814.1|AF145121_1 topoisomerase I-like protein [Leishmania infantum]
Length = 635
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/443 (54%), Positives = 308/443 (69%), Gaps = 5/443 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY WH Q+EKK + EEKKA+KE+++ +
Sbjct: 102 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ +P
Sbjct: 162 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVP-V 220
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLKD
Sbjct: 221 PPAGHKWAAVQHDHTVTWLAMWRDSV-AGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDK 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 280 VDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+P N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 340 MPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKS 399
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + D A K+ + +AN EVAI+CNHQ++VSK
Sbjct: 400 FMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSK 459
Query: 816 THSAQMSRLTEKIEDLKGVLKDL 838
QM +LT K E + ++ L
Sbjct: 460 NFKLQMMQLTTKSEYTRKTIELL 482
>gi|219518625|gb|AAI45337.1| Top1mt protein [Mus musculus]
Length = 592
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 259/557 (46%), Positives = 349/557 (62%), Gaps = 21/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV LY GK + L+ EEVAT + ML + K FR
Sbjct: 45 KWRQLEHKGPYFTPAYEPLPDGVHFLYDGKPLKLSLAAEEVATFYGKMLHLECTSKEVFR 104
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWRK + + +I +L+ CDF I+ E+ E ++ + E+K+ LKEE K +
Sbjct: 105 RNFFSDWRKEMTPEERRLITHLDKCDFTEIHKHFLERAEARRTLPREQKQ-LKEEAEKLQ 163
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IPE
Sbjct: 164 QEFGYCVLDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPE- 222
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I FKYV L SS KG+ D +KYE AR+LK
Sbjct: 223 PPAGHQWKEVRSDNTVMWLAAWVEHIQ-NSFKYVILNPSSKPKGEMDWQKYEVARRLKGV 281
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y D+ S + +RQ+AVA Y IDKLALR GNEK++ E ADTVGCC+L+V ++
Sbjct: 282 VDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIR 341
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++ DFLGKDSI+Y N V VE V++ + F K DDLFD L T+ L
Sbjct: 342 LHAPAGGQEHVVELDFLGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSL 401
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNAS+TL L T + V K+ Y RAN+ VA++CNHQ
Sbjct: 402 NKHLQDLMEGLTAKVFRTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQ 461
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R V KT M L +KIE K + + +V+L +K + L D K K L +
Sbjct: 462 RAVPKTFEKSMQTLQKKIETKKAQVAEAQVEL---QKAETDLRMRGDSKPKSFLQK---Q 515
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R++ + ++ ++ KE+ K VALGT+K+NYLDPRI++AWCKR VP+EKI+NK+
Sbjct: 516 RRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYLDPRISIAWCKRFGVPVEKIYNKTQ 575
Query: 931 LAKFAWAMDVDPE-FRF 946
+FAWA + E F F
Sbjct: 576 RERFAWAFNQAGEDFEF 592
>gi|238483363|ref|XP_002372920.1| topoisomerase I [Aspergillus flavus NRRL3357]
gi|220700970|gb|EED57308.1| topoisomerase I [Aspergillus flavus NRRL3357]
Length = 881
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 298/728 (40%), Positives = 416/728 (57%), Gaps = 75/728 (10%)
Query: 197 SEDDKPLSARLKGNSK-----------------NVNQGIGASKADAAISEVNVKTDPEDS 239
SEDD PL +K N + +VN GI +++ + +V+ ++
Sbjct: 4 SEDDTPL---VKANGRSTVTPNVTMGDATETNGDVNPGI-SNRFGPVQKDNDVQMTDAEA 59
Query: 240 DDEVPLSSRFPKSNAGT--SGAKPIDSDEK-KPLASKVQQNGSTSRETQQKSSSVPVKRP 296
D LS R +++ G S A+P S+E +PL+ + + S E + VP+
Sbjct: 60 QDNGALSKRKARTSVGQRKSYAEPESSEEDDQPLSKR--RRTSVKHEDPETDEDVPLALN 117
Query: 297 LQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPS----- 351
+K + +S + SD E K+ ++++KA+ D Q +A +
Sbjct: 118 GRKLPKAAETSIIEESDSDVPIERKLASQKKRIQQKAEKDAQASRKQESAKAAANKKPTN 177
Query: 352 -VKKSVTNTAKATKSVSSSSNKINKKTKK---VIKNSQYSKSTKML-------------- 393
+KK N K K S++ K K+ + V K S + K
Sbjct: 178 GIKKEPANDKKPVKRASTAKVKTEPKSAQSTPVKKGSAKATPVKKEESEEAEEAEEEEYR 237
Query: 394 ----PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVM 447
P GDG KWTTL HNGV+FPPPY LP VKM Y G VNL P+ EEVA F M
Sbjct: 238 WWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKMKYDGVPVNLHPDAEEVAGFFGSM 297
Query: 448 LD-TDYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKE 496
L+ T +++ P F++NF+ D++ +L K N V I++ CDF+PI+ ++ ++
Sbjct: 298 LNATQHVENPTFQKNFFMDFKDILKKTGGATDSKGNKVDIKDFSKCDFQPIFAYYDMKRL 357
Query: 497 KKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
+KK + EKK LK EK+ +E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K
Sbjct: 358 EKKNLPPAEKKRLKAEKDAEEAPYMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVK 417
Query: 557 KRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAS 616
R+QP ITINIGKD P+P P G WKEVKHD TWLA W + IN +KYV LAA+
Sbjct: 418 SRVQPEQITINIGKDAPVPPPP-EGHRWKEVKHDQEGTWLAMWQENIN-GNYKYVMLAAN 475
Query: 617 SSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE 676
S +KGQSD +K+EKAR+LK +I IR Y K+ + RQ A A YLID+ ALRAGNE
Sbjct: 476 SDVKGQSDYKKFEKARELKKHIDKIRKDYKKNMKNELMVERQKATAVYLIDQFALRAGNE 535
Query: 677 KDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-QTG 735
K +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F ++
Sbjct: 536 KGEDEAETVGCCSLKYENVTLKPPNKVVFDFLGKDSIRFYDEVEVDAQVFKNLKIFKKSP 595
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV 795
KK+ D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L G +A K+
Sbjct: 596 KKEGDEIFDRLTTSALNKHLSNYMQGLTAKVFRTYNASHTMSTLLKDMKATGTIAEKVKA 655
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGK 849
Y AN++VAI+CNH+RTV+ +H+ QM ++ E+I+ L + LK +DL+ + KKG
Sbjct: 656 YNDANRQVAILCNHKRTVTASHANQMEKMGERIKGLRYQRWRLKQQMLDLEPNLKKKKGA 715
Query: 850 PPLMKDSD 857
D D
Sbjct: 716 KFFEMDED 723
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE ME + KED K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 801 EKLENAIQKLEQRIETMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFF 860
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+KSL KF WA+ V+ ++ F
Sbjct: 861 SKSLREKFEWAIKSVEQDWEF 881
>gi|169766616|ref|XP_001817779.1| DNA topoisomerase 1 [Aspergillus oryzae RIB40]
gi|83765634|dbj|BAE55777.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864823|gb|EIT74117.1| DNA topoisomerase I [Aspergillus oryzae 3.042]
Length = 881
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 298/728 (40%), Positives = 416/728 (57%), Gaps = 75/728 (10%)
Query: 197 SEDDKPLSARLKGNSK-----------------NVNQGIGASKADAAISEVNVKTDPEDS 239
SEDD PL +K N + +VN GI +++ + +V+ ++
Sbjct: 4 SEDDTPL---VKANGRSTVTPNVTMGDATETNGDVNPGI-SNRFGPVQKDNDVQMTDAEA 59
Query: 240 DDEVPLSSRFPKSNAGT--SGAKPIDSDEK-KPLASKVQQNGSTSRETQQKSSSVPVKRP 296
D LS R +++ G S A+P S+E +PL+ + + S E + VP+
Sbjct: 60 QDNGALSKRKARTSVGQRQSYAEPESSEEDDQPLSKR--RRTSVKHEDPETDEDVPLALN 117
Query: 297 LQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPS----- 351
+K + +S + SD E K+ ++++KA+ D Q +A +
Sbjct: 118 GRKLPKAAETSIIEESDSDVPIERKLASQKKRIQQKAEKDAQASRKQESAKAAANKKPTN 177
Query: 352 -VKKSVTNTAKATKSVSSSSNKINKKTKK---VIKNSQYSKSTKML-------------- 393
+KK N K K S++ K K+ + V K S + K
Sbjct: 178 GIKKEPANDKKPVKRASTAKVKTEPKSAQSTPVKKGSAKATPVKKEESEEAEEAEEEEYR 237
Query: 394 ----PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVM 447
P GDG KWTTL HNGV+FPPPY LP VKM Y G VNL P+ EEVA F M
Sbjct: 238 WWEDPTKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKMKYDGVPVNLHPDAEEVAGFFGSM 297
Query: 448 LD-TDYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKE 496
L+ T +++ P F++NF+ D++ +L K N V I++ CDF+PI+ ++ ++
Sbjct: 298 LNATQHVENPTFQKNFFMDFKDILKKTGGATDSKGNKVDIKDFSKCDFQPIFAYYDMKRL 357
Query: 497 KKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
+KK + EKK LK EK+ +E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K
Sbjct: 358 EKKNLPPAEKKRLKAEKDAEEAPYMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVK 417
Query: 557 KRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAS 616
R+QP ITINIGKD P+P P G WKEVKHD TWLA W + IN +KYV LAA+
Sbjct: 418 SRVQPEQITINIGKDAPVPPPP-EGHRWKEVKHDQEGTWLAMWQENIN-GNYKYVMLAAN 475
Query: 617 SSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE 676
S +KGQSD +K+EKAR+LK +I IR Y K+ + RQ A A YLID+ ALRAGNE
Sbjct: 476 SDVKGQSDYKKFEKARELKKHIDKIRKDYKKNMKNELMVERQKATAVYLIDQFALRAGNE 535
Query: 677 KDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-QTG 735
K +DEA+TVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F ++
Sbjct: 536 KGEDEAETVGCCSLKYENVTLKPPNKVVFDFLGKDSIRFYDEVEVDAQVFKNLKIFKKSP 595
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV 795
KK+ D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L G +A K+
Sbjct: 596 KKEGDEIFDRLTTSALNKHLSNYMQGLTAKVFRTYNASHTMSTLLKDMKATGTIAEKVKA 655
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGK 849
Y AN++VAI+CNH+RTV+ +H+ QM ++ E+I+ L + LK +DL+ + KKG
Sbjct: 656 YNDANRQVAILCNHKRTVTASHANQMEKMGERIKGLRYQRWRLKQQMLDLEPNLKKKKGA 715
Query: 850 PPLMKDSD 857
D D
Sbjct: 716 KFFEMDED 723
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE ME + KED K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 801 EKLENAIQKLEQRIETMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFF 860
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+KSL KF WA+ V+ ++ F
Sbjct: 861 SKSLREKFEWAIKSVEQDWEF 881
>gi|67515943|ref|XP_657857.1| hypothetical protein AN0253.2 [Aspergillus nidulans FGSC A4]
gi|40746970|gb|EAA66126.1| hypothetical protein AN0253.2 [Aspergillus nidulans FGSC A4]
gi|259489529|tpe|CBF89874.1| TPA: Topoisomerase I [Source:UniProtKB/TrEMBL;Acc:Q875K2]
[Aspergillus nidulans FGSC A4]
Length = 871
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 298/720 (41%), Positives = 403/720 (55%), Gaps = 69/720 (9%)
Query: 197 SEDDKPL---SARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPL-------- 245
S+DD PL + R G +V A V+++ P D++V +
Sbjct: 4 SDDDTPLVKMNGRSSGGQSDVKVNGAADTNGHVDPGVSIRFGPVQKDEDVEMNDANGASA 63
Query: 246 SSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVK---RPLQKASS 302
S R +S+A + + ++ ++ S E + VP+ R L KAS
Sbjct: 64 SKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKLPKASE 123
Query: 303 SGASSAKKPKVSDTSKEVKV----KQVTVKVEKKADDDDHIPISQRMKNSA--------- 349
+ SD E K+ K++ VK EK AD P +Q K++A
Sbjct: 124 TAIGEESD---SDVPIERKLAAEKKKIQVKGEKDAD-----PSAQATKSAASGKKQANGV 175
Query: 350 ----PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML--------PGSG 397
S K+++ KS S+ K N K + K P G
Sbjct: 176 KKEPASAKQTLKQVKAEPKSAQSTPAKKNAKATALKKEESEEAEEPEEEEYRWWEDPTKG 235
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
DG KWTTL HNGV+FPPPY LP VKM Y G V+L PE EEVA F ML+ T + +
Sbjct: 236 DGTIKWTTLEHNGVVFPPPYEPLPKHVKMKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTE 295
Query: 455 KPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L K N V I+ CDF+PI+ ++ Q+++KK +
Sbjct: 296 NPTFQKNFFADFKEILKKTGGAKDQKGNKVDIKEFSKCDFQPIFQYYDAQRQEKKALPPA 355
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKK LK EK+ QE YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K R+QP I
Sbjct: 356 EKKRLKAEKDAQEAPYMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVKARVQPEQI 415
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +KGQSD
Sbjct: 416 TINIGKEARVPPPP-EGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDVKGQSD 473
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
+K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGNEK +DEA+T
Sbjct: 474 YKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGEDEAET 533
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLF 743
VGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F+ KK+ D++F
Sbjct: 534 VGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIF 593
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
D+L T+ LN HL + MPGLTAKVFRTYNAS T+ +L G+ A K+ Y AN++V
Sbjct: 594 DRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHATGNNAEKVKAYNDANRKV 653
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIED---LKGVLKDLRVDLD---RAKKGKPPLMKDSD 857
AI+CNH+RTV H+ QM +++E+I+ K LK + +DLD + KKG D D
Sbjct: 654 AILCNHKRTVGAAHAHQMEKMSERIKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFELDED 713
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE ME + KED K VALGTSKINY+DPR+TV + K+ +VPIEK F
Sbjct: 791 EKLEASITKLQQRIENMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFKVPIEKFF 850
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+KSL KF WA+ VD + F
Sbjct: 851 SKSLREKFEWAIKSVDENWEF 871
>gi|157876177|ref|XP_001686448.1| DNA topoisomerase IB, large subunit [Leishmania major strain
Friedlin]
gi|68129522|emb|CAJ08065.1| DNA topoisomerase IB, large subunit [Leishmania major strain
Friedlin]
Length = 634
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/443 (54%), Positives = 308/443 (69%), Gaps = 5/443 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++LGK H I+ LE CDF+PIY W+ Q+EKK + EEKKA+KE+++ +
Sbjct: 102 RRNFFESWREILGKRQHPIRRLELCDFEPIYQWYLVQREKKLSRTKEEKKAIKEKQDAEA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ +P
Sbjct: 162 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVP-V 220
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLKD
Sbjct: 221 PPAGHKWAAVQHDHTVTWLAMWRDNV-AGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDK 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y + F S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 280 VDDIRASYMEAFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+P N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 340 MPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTCRKSPGMDIFDQLNPTQLNDHLKS 399
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + D A K+ + +AN EVAI+CNHQ++VSK
Sbjct: 400 FMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSK 459
Query: 816 THSAQMSRLTEKIEDLKGVLKDL 838
QM +LT K E + L+ L
Sbjct: 460 NFKLQMMQLTTKSEYTRKTLELL 482
>gi|326918186|ref|XP_003205372.1| PREDICTED: DNA topoisomerase I, mitochondrial-like, partial
[Meleagris gallopavo]
Length = 521
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 264/528 (50%), Positives = 351/528 (66%), Gaps = 17/528 (3%)
Query: 429 KEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKP 486
K + L+ EE+AT +A MLD +Y K F+ NF+NDWRK + + +I+ L+ CDF+
Sbjct: 1 KPLKLSLATEEIATFYAKMLDHEYTTKEIFQNNFFNDWRKEMTPQEQEIIKQLDKCDFRE 60
Query: 487 IYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGR 546
I+ + ++ E +K +S EEK+ LKEE +K +E+Y + I+DG +EK+GNF+ EPPGLFRGR
Sbjct: 61 IHKYFVDKNEARKALSKEEKQKLKEEADKIQEEYGYCILDGHREKIGNFKTEPPGLFRGR 120
Query: 547 GEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPK 606
G+HPKMG LKKRI P D+ IN KD IPE P+ G WKEV+ DNTVTWLA W + I
Sbjct: 121 GDHPKMGMLKKRIMPEDVIINCSKDSKIPEPPV-GHKWKEVRFDNTVTWLASWTENIQ-N 178
Query: 607 EFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLI 666
KY+ L SS LKG+ D +K+E AR+LKD +H IRA Y D+ S++ +RQ AVA Y I
Sbjct: 179 SLKYIMLNPSSKLKGEKDWQKFEVARRLKDVVHKIRAQYQADWKSKEMKKRQRAVALYFI 238
Query: 667 DKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVE 720
DKLALRAGNEK++ E ADTVGCC+L+V +++ + ++FDFLGKDSI+Y N V
Sbjct: 239 DKLALRAGNEKEEGETADTVGCCSLRVEHIKLHSELDGQEHVVEFDFLGKDSIRYYNKVS 298
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE PV+K + F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L
Sbjct: 299 VEKPVFKNLQLFMKNKDPGDDLFDRLSTVILNKHLQELMNGLTAKVFRTYNASITLQEQL 358
Query: 781 NKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR 839
T D VA K+ Y RAN+ VAI+CNHQR+ KT M L KI+ K L+ R
Sbjct: 359 KALTNPEDSVAGKLLSYNRANRAVAILCNHQRSTPKTFEKSMQNLQTKIDAKKEQLEKAR 418
Query: 840 VDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALG 899
+L+ A + L D K + N+ + ++ + + ++ K+ KE+ K +ALG
Sbjct: 419 QELEEA---EDELKDKKDAKAEANV--QKKKKLLERLKEQLVKLNVQATDKEENKQIALG 473
Query: 900 TSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
TSK+NYLDPRI++AWCK+ VPIEKIFNK+ KFAWA+D+ D +F F
Sbjct: 474 TSKLNYLDPRISIAWCKKFGVPIEKIFNKTQREKFAWAIDMTDEDFEF 521
>gi|390602536|gb|EIN11929.1| hypothetical protein PUNSTDRAFT_62929 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 780
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/459 (53%), Positives = 315/459 (68%), Gaps = 18/459 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE----VNLTPEQEEVATMFAVMLDTD 451
DG KW TL HNGV+FPPPY LP VKM Y G+ VNL PE EEVA +A ++++D
Sbjct: 151 DGSIKWKTLEHNGVLFPPPYEPLPTHVKMKYNGEPPGNVVNLPPESEEVAQFYAALIESD 210
Query: 452 YMQKPKFRENFWNDWRKLL-------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
+ Q F +NF+ DW+ +L G N I +++ CDF+PIY++ +E++ KKK ++S
Sbjct: 211 HAQDAVFNKNFFRDWKAVLKEHPPLDGTN--ITDMKLCDFRPIYEYLEEERAKKKALTSA 268
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
+KK LK EK+K EE Y + ++G KEK+GNFR+EPPGLFRGRGEHPK G LK R++P DI
Sbjct: 269 QKKELKAEKDKLEEPYAYCKLNGRKEKIGNFRIEPPGLFRGRGEHPKKGSLKHRVRPEDI 328
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIG+ VPIP +PG+ WK V HD TVTWLA W + IN + KYVFLAA+SSLKGQSD
Sbjct: 329 TINIGEGVPIPVPNMPGK-WKNVIHDQTVTWLANWQENINNQN-KYVFLAANSSLKGQSD 386
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
K+EKAR+LK ++ IR YT D ++ RQ A A Y ID+LALRAGNEK +DEADT
Sbjct: 387 MAKFEKARELKKHVERIRQDYTADLKTKVMADRQRATAMYFIDRLALRAGNEKGEDEADT 446
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
VGCC+L+ +V PN + FDFLGKDSI+Y N V V+ V+K I F+ K+ +D+LFD
Sbjct: 447 VGCCSLRCEHVTLEAPNFIIFDFLGKDSIRYYNRVAVDEQVFKNIRIFKKDKEDDDNLFD 506
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEV 803
++ T LN HL+ M GLTAKVFRTYNASIT L++GT + K++ Y AN+ V
Sbjct: 507 RVATTTLNKHLQSYMKGLTAKVFRTYNASITFQQQLDEGTPETATTQEKLNAYNHANRMV 566
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
AI+CNHQR V KTH M+++ +KI LK LR L
Sbjct: 567 AILCNHQRAVPKTHDQSMAKMRDKIRGLKYERMKLRHAL 605
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 74/125 (59%), Gaps = 11/125 (8%)
Query: 822 SRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIE 881
S L EKI D+K K LR + R + P KR E LE + + +I
Sbjct: 667 SVLKEKIADIKEEFKQLRKE--RGTQKHEP---------KRAKPVEKLEGAIDKLTERIT 715
Query: 882 KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVD 941
+ M ++ K VALGTSKINYLDPRIT AWC +H+VPIEKIF+K+LL KF WAM VD
Sbjct: 716 TTKLQMDDRDAGKEVALGTSKINYLDPRITAAWCAKHDVPIEKIFSKTLLNKFPWAMHVD 775
Query: 942 PEFRF 946
+++F
Sbjct: 776 EDWKF 780
>gi|27752875|gb|AAO19447.1| topoisomerase I [Emericella nidulans]
Length = 871
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 298/720 (41%), Positives = 403/720 (55%), Gaps = 69/720 (9%)
Query: 197 SEDDKPL---SARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPL-------- 245
S+DD PL + R G +V A V+++ P D++V +
Sbjct: 4 SDDDTPLVKMNGRSSGGQSDVKVNGAADTNGHVDPGVSIRFGPVQKDEDVEMNDANGASA 63
Query: 246 SSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVK---RPLQKASS 302
S R +S+A + + ++ ++ S E + VP+ R L KAS
Sbjct: 64 SKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKLPKASE 123
Query: 303 SGASSAKKPKVSDTSKEVKV----KQVTVKVEKKADDDDHIPISQRMKNSA--------- 349
+ SD E K+ K++ VK EK AD P +Q K++A
Sbjct: 124 TAIGEESD---SDVPIERKLAAEKKKIQVKGEKDAD-----PSAQATKSAASGKKQANGV 175
Query: 350 ----PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML--------PGSG 397
S K+++ KS S+ K N K + K P G
Sbjct: 176 KKEPASAKQTLKQVKAEPKSAQSTPAKKNAKATALKKEESEEAEEPEEEEYRWWEDPTKG 235
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
DG KWTTL HNGV+FPPPY LP VKM Y G V+L PE EEVA F ML+ T + +
Sbjct: 236 DGTIKWTTLEHNGVVFPPPYEPLPKHVKMKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTE 295
Query: 455 KPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L K N V I+ CDF+PI+ ++ Q+++KK +
Sbjct: 296 NPTFQKNFFADFKEILKKTGGAKDQKGNKVDIKEFSKCDFQPIFQYYDAQRQEKKALPPA 355
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKK LK EK+ QE YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K R+QP I
Sbjct: 356 EKKRLKAEKDAQEAPYMYCMWDGRKQKVGNFRVEPPPLFRGRGEHPKTGRVKARVQPEQI 415
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +KGQSD
Sbjct: 416 TINIGKEARVPPPP-EGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDVKGQSD 473
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
+K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGNEK +DEA+T
Sbjct: 474 YKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGEDEAET 533
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLF 743
VGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F+ KK+ D++F
Sbjct: 534 VGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIF 593
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
D+L T+ LN HL + MPGLTAKVFRTYNAS T+ +L G+ A K+ Y AN++V
Sbjct: 594 DRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHATGNNAEKVKAYNDANRKV 653
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIED---LKGVLKDLRVDLD---RAKKGKPPLMKDSD 857
AI+CNH+RTV H+ QM +++E+I+ K LK + +DLD + KKG D D
Sbjct: 654 AILCNHKRTVGAAHAHQMEKMSERIKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFELDED 713
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE ME + KED K VALGTSKINY+DPR+TV + K+ +VPIEK F
Sbjct: 791 EKLEASITKLQQRIENMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFKVPIEKFF 850
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+KSL KF WA+ VD + F
Sbjct: 851 SKSLREKFEWAIKSVDENWEF 871
>gi|429327307|gb|AFZ79067.1| DNA topoisomerase type I, putative [Babesia equi]
Length = 807
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/710 (39%), Positives = 408/710 (57%), Gaps = 74/710 (10%)
Query: 281 SRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIP 340
+ +T +SSV ++ L+ S+ +S + +PKV + +E+K
Sbjct: 128 TNDTCVDASSVSIETNLKAKSTLNSSKSVEPKV-EVKREIK------------------- 167
Query: 341 ISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQ 400
+++ ++ SV K + K +++ IN+ + + + +Y++ K
Sbjct: 168 -NEKTDSAKESVPKRIKTEKKTDRNIEDIIEPINRWWEGMDSDYKYNQIEK-------PT 219
Query: 401 KKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRE 460
+ WT + HNG+IF P Y+PH V + +KG+E+ L PE EE+ATM+A + T+Y + +
Sbjct: 220 EYWTYMEHNGMIFTPEYVPHSVPITFKGEEMVLPPEIEEIATMWAQSIGTNYETSEIYCK 279
Query: 461 NFWNDWRKLLGKNHVIQN----LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
NFWN + K+H I+ L+ CDF I + H E +++KK+ + E +A E K
Sbjct: 280 NFWNVFTSKFEKSHPIRKSSSKLKDCDFSKIKE-HLENEKQKKKDNKEFYQAKAAETAKL 338
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
E K+ +A+VD ++EKV + ++EPPGLF+GRG HPK G LK R+ P D+ +N+ KD P+P+
Sbjct: 339 EHKFNYALVDWIREKVSSNKLEPPGLFKGRGLHPKQGLLKCRMFPYDVILNLSKDAPVPK 398
Query: 577 CP---IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
G WK++ HDN+VTWLA++ D IN +FKY++LAA S KG D KY KAR
Sbjct: 399 VSNFQRDGHCWKDIYHDNSVTWLAYYRDSIND-QFKYMYLAAQSKFKGLHDLLKYNKARD 457
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
LK+YI IR Y +S D RQI ATYLID LALR G EKD DEADTVGCC+L+V
Sbjct: 458 LKNYIEKIREDYHAKMLSLDMFERQIGTATYLIDFLALRVGGEKDADEADTVGCCSLRVE 517
Query: 694 NVEC--IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+++ PN + DFLGKDSI+Y NTV + Y + +F KK N ++F+ ++T KL
Sbjct: 518 HIKFNDKKPNVITLDFLGKDSIRYFNTVTLNDVAYNNMVKFCYRKKPNAEIFNLINTTKL 577
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG--------DGDVA-------VKIDV- 795
N +LKE+M GL+AKVFRTYNASITL + G GDV+ + +D+
Sbjct: 578 NDYLKEMMDGLSAKVFRTYNASITLQNQFKRLKGKKKQNTDSSGDVSTDSSTKPISVDIC 637
Query: 796 --------YQRANKEVAIICNHQRTVSKTHSAQMSR-------LTEKIEDLKGVLKDLRV 840
Y AN+EVAI+CNHQR++ K H MS+ L E IE+L +K L
Sbjct: 638 NVSELLQFYNFANREVAILCNHQRSIPKQHENSMSKLKVQADMLKEDIEELNQYIKHLES 697
Query: 841 DLDRAKKGKPPLMKDSDGKRKR----NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
+ + + + RKR + EA + ++ + + M+ K+ KTV
Sbjct: 698 GSKTEFQFESKTLDVNGNPRKRITKSGMKLEACKNRLQTVKKRQKDHSIKMRIKDSNKTV 757
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ALGTSKINY+DPRITVA+CK++E+PIEK+FNKSL KF WAM V +F F
Sbjct: 758 ALGTSKINYMDPRITVAFCKKYEIPIEKVFNKSLRMKFPWAMFVKSDFLF 807
>gi|448089584|ref|XP_004196847.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
gi|448093884|ref|XP_004197878.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
gi|359378269|emb|CCE84528.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
gi|359379300|emb|CCE83497.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
Length = 774
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 273/629 (43%), Positives = 373/629 (59%), Gaps = 82/629 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG++KW +L HNGVIFPP Y LP VK+ Y G V+L E EEVA FA +L+TD+ +
Sbjct: 148 DGEQKWESLEHNGVIFPPEYEPLPSHVKLYYDGVPVDLPIEAEEVAGFFAALLETDHAKN 207
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NF+ D+ K+L G N I + DF ++ + + KE+KK MS +EKKALK
Sbjct: 208 PTFQKNFFEDFCKVLKDAGGCNVNIIDFNKMDFSKMHAYFEMLKEQKKMMSRDEKKALKL 267
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
E+ K EE Y + +++G +E+VGNF++EPPGLFRGRG HPK GKLKKR+ P D+T+N+ K
Sbjct: 268 EREKFEEPYKFCLLNGRREQVGNFKIEPPGLFRGRGAHPKTGKLKKRVYPEDVTLNLSKG 327
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
V IP+ P G W EV+HDNTVTWLA W + I FKYV +SS+KG SD +K+E A
Sbjct: 328 VKIPDPPA-GHKWAEVRHDNTVTWLAMWKENIT-DSFKYVRFGNTSSVKGMSDFKKFETA 385
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R LK +I +IR Y K RQ+A ATYLID ALRAG EK +DEADTVGCC+L+
Sbjct: 386 RNLKYHIDAIRKDYNKMLKDPLMQNRQMATATYLIDIFALRAGGEKGEDEADTVGCCSLR 445
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
+V PPNK+ FDFLGKDSI++ VEV+ +K + F+ KQ DDLFD++
Sbjct: 446 YEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDPQAFKNLRIFKKPPKQPGDDLFDRISPPM 505
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
LN + M GLTAKVFRTYNAS T+ L+ +G VA K+ + AN+ VAI+CNHQ
Sbjct: 506 LNKQFQTYMKGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKVVKFNAANRTVAILCNHQ 565
Query: 811 RTVSKTHSAQMSRLTEKIEDLK-------------------------------------- 832
RT+SKTHSA + ++ +K+ +L+
Sbjct: 566 RTISKTHSAAVEKIHDKLRELQWQKIRIKRMILQLEPNLKKKEPKYFEEIDDLTKEEIKA 625
Query: 833 ---GVLKDLRVDLDR--------AKKGKPPLMKDSDGKRKRN----LAPEALE-----RK 872
VL+ R + R K PL+++S+ K + + LA E E +
Sbjct: 626 VHEAVLEKQRESVRRRFQRENEKLSAEKKPLLEESELKERLSKVDELAEEYKEELKTNKP 685
Query: 873 MAQTNAKIEKMERDMKT--------------KEDLKTVALGTSKINYLDPRITVAWCKRH 918
+ + +A +EK++ ++T KED V+L TSKINY+DPR+TV + K+
Sbjct: 686 VVKKSATVEKLKTQVETLENRITNTTFQLKDKEDNSEVSLSTSKINYIDPRLTVVFSKKF 745
Query: 919 EVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
VPIEK+F K+L KF WA++ D +RF
Sbjct: 746 GVPIEKLFTKTLRDKFKWAIESADENWRF 774
>gi|358339245|dbj|GAA28973.2| DNA topoisomerase I [Clonorchis sinensis]
Length = 711
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 260/560 (46%), Positives = 356/560 (63%), Gaps = 18/560 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWT L H G IF PPY LP V+ Y G+ V L+ EEVA +A MLD DY K
Sbjct: 132 DNGVKWTFLEHKGPIFAPPYERLPDNVRFYYDGQPVRLSDAAEEVAGFYARMLDHDYTTK 191
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F +NF+ DW K++ + +I++L CDF+ ++ + E++K + EEK+ LKEE
Sbjct: 192 EVFNKNFFKDWLKVMNDDERRIIKSLSKCDFREMHAHFLKLTEERKNRTKEEKQKLKEEN 251
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+Y + +DG ++++GNFR+EPPGLFRGRG HPKMG LKKR+ P + IN K+
Sbjct: 252 LALLNEYGYCTLDGHRQRIGNFRIEPPGLFRGRGNHPKMGMLKKRVLPEHVIINCSKNSK 311
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IP P G WKEV+HDNTVTWLA W + + FKYV L SS LKG+ D +KYE AR
Sbjct: 312 IP-VPPKGHRWKEVRHDNTVTWLACWTENVQ-NNFKYVMLNPSSRLKGEKDWKKYETARG 369
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
L I IRA Y DF ++ RQ AVA Y ID+LALRAGNEKD+DEADTVGCC+L+
Sbjct: 370 LHKIIDRIRADYRADFKHKEMRIRQRAVALYFIDRLALRAGNEKDEDEADTVGCCSLRYE 429
Query: 694 NVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+++ ++FDFLGKDSI+Y N+V V V+K + F KK+NDDLFD+L+T
Sbjct: 430 HIKLHEELDGKQYVVEFDFLGKDSIRYQNSVAVPKRVFKNVRLFLQNKKENDDLFDRLNT 489
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIIC 807
LN +L+ELM GLTAKVFRTYNAS TL+ L T D K+ Y RAN+ VA++C
Sbjct: 490 TVLNQYLRELMEGLTAKVFRTYNASRTLEEQLELLTDPNDSPQEKLLAYNRANRAVAVLC 549
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE 867
NHQR V K+ + M L +KI+ + + ++ + AK+ K ++ +K +A E
Sbjct: 550 NHQRAVPKSFAKSMENLQKKIDAKRDQIAEI---TNEAKQIKADYKRNKQVAKK--VAYE 604
Query: 868 ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
L+++++ ++ K++ +++ K +AL TSK+NYLDPRITVAWCKR VPIEK++N
Sbjct: 605 KLKKRLSVAKEQLAKLQLQATDRDENKEIALSTSKLNYLDPRITVAWCKRFNVPIEKVYN 664
Query: 928 KSLLAKFAWAMDV-DPEFRF 946
K+ KF WA+D+ E++F
Sbjct: 665 KTQREKFQWAIDMATAEYKF 684
>gi|1762119|gb|AAB39507.1| topoisomerase I [Candida albicans]
Length = 780
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/630 (44%), Positives = 374/630 (59%), Gaps = 82/630 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 153 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 212
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P F++NF+ND+ ++L G I+ E DF +Y ++ +E+KK MS EEKK +K
Sbjct: 213 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 272
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EEK K+EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ +T+N+GK
Sbjct: 273 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVSEQVTLNLGK 332
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 333 DAKIPEPP-AGHQWGEIRHDNEVTWLAMWKENISD-SLKYVRFANNSSVKGQSDFKKFET 390
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 391 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 450
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 451 RYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 510
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 511 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 570
Query: 810 QRTVSKTHSAQMSRLTEKI-----------------------------EDLKGVLKD--- 837
QRTVSKTH + R+ +K+ E++ +LK+
Sbjct: 571 QRTVSKTHGDSVQRINDKLKKFMWQKIRLKKMILQLEPKLKKKDSKYFEEIDDLLKEDIE 630
Query: 838 -----------------LRVDLDRAKKGKPPLMKDSDGKRK------------------- 861
L D ++ K PL+ +SD K K
Sbjct: 631 HIHHTIIKRQREQAKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDELEKEYQKELKTGK 690
Query: 862 ----RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
+N E L++++ KI + +K KED V+LGTSK+NY+DPR+ V + K+
Sbjct: 691 PIVTKNATVEKLKQQIETLENKILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSKK 750
Query: 918 HEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 751 FDVPIEKLFTKTLREKFIWAIESADENWRF 780
>gi|392569488|gb|EIW62661.1| hypothetical protein TRAVEDRAFT_114324 [Trametes versicolor
FP-101664 SS1]
Length = 799
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/453 (53%), Positives = 312/453 (68%), Gaps = 10/453 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG KW L HNGV FPP Y LP VKM Y G+ V+L E EEVA + ++++ + Q
Sbjct: 174 DGSVKWVMLEHNGVYFPPAYEPLPKHVKMKYNGEPVDLPVESEEVAGFYGALIESPHAQD 233
Query: 456 PKFRENFWNDWRKLLGK----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
F +NF++D+ K+L K N + I E CDF+P+Y++ + +KEKKK M++ EKKA K
Sbjct: 234 VTFNKNFFDDFLKVLKKYPPRNGIKITKFELCDFRPMYEYFESEKEKKKSMTTAEKKAAK 293
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
K++ E Y +DG KEKVGNFR+EPPGLFRGRG+HPK G LK R++P DITINIGK
Sbjct: 294 AAKDELEAPYTHCTLDGRKEKVGNFRIEPPGLFRGRGDHPKKGALKHRLRPEDITINIGK 353
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D P+P +PG+ WK+V HDNTVTWLA W + +N +KYVFLAA SSLKGQSD +K+EK
Sbjct: 354 DSPVPTPNVPGK-WKDVVHDNTVTWLANWVENVN-GNYKYVFLAAGSSLKGQSDMQKFEK 411
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
AR+LK ++ IRA Y D ++ RQ A A Y IDKLALRAGNEK D+EADTVGCC+L
Sbjct: 412 ARELKKHVDKIRADYQADLKTKQMMERQRATAMYFIDKLALRAGNEKGDEEADTVGCCSL 471
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
+ +V +PPNKL FDFLGKDSI+Y N V+V+ VYK I F+ K D+LFD+++T
Sbjct: 472 RCEHVTLLPPNKLVFDFLGKDSIRYYNEVQVDDQVYKNIRIFKGNKNDEDELFDRVNTGA 531
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICNH 809
LN HL M GLTAKVFRT+NAS+T +L++GT + G K++ Y AN+ VAI+CNH
Sbjct: 532 LNKHLASYMKGLTAKVFRTFNASLTFQELLDRGTPEKGTTQEKLNAYNHANRMVAILCNH 591
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
QR V KTH M+++ EK+ LK LR L
Sbjct: 592 QRAVPKTHEQSMTKMREKLRGLKYERMKLRHAL 624
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 12/120 (10%)
Query: 831 LKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA----PEALERKMAQTNAKIEKMERD 886
LK LK++ + R KK + G K L E +E + + + KI+ +
Sbjct: 688 LKEKLKEVEAEYKRLKKER--------GTEKHALKKERPAEKIEDAIDKLDEKIKAFKLQ 739
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
M+ +E K VAL TSKINYLDPRITVAWCK ++VP+EK+F+K+L+ KF WAM+ DPE++F
Sbjct: 740 MEDREAGKEVALSTSKINYLDPRITVAWCKDNDVPVEKLFSKTLITKFPWAMEADPEWKF 799
>gi|58271538|ref|XP_572925.1| topoisomerase I [Cryptococcus neoformans var. neoformans JEC21]
gi|134115128|ref|XP_773862.1| hypothetical protein CNBH3140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256490|gb|EAL19215.1| hypothetical protein CNBH3140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229184|gb|AAW45618.1| topoisomerase I [Cryptococcus neoformans var. neoformans JEC21]
Length = 881
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 260/514 (50%), Positives = 337/514 (65%), Gaps = 22/514 (4%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KWT L HN V+FPPPY LP VKM Y G + L PE EEVA F +L+TDY Q
Sbjct: 253 GDGSSKWTVLEHNAVLFPPPYVPLPKNVKMKYDGVSLTLPPESEEVAGFFGALLETDYAQ 312
Query: 455 KPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
KFRENF+ D++ ++ K + ++ LE CDF+P++++ +++KEKKK ++ EEKKA+
Sbjct: 313 DAKFRENFFRDFKAIVEKYPPKEDVKVKKLEKCDFRPMFEYFEKEKEKKKALTKEEKKAI 372
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K EK+K E Y++A VDG KEKVGNFR EPPGLF+GRGEHPK G +K R++P DI INIG
Sbjct: 373 KAEKDKLEAPYLYANVDGRKEKVGNFRAEPPGLFKGRGEHPKKGTVKNRLRPEDIIINIG 432
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ PIP IPG+ WK ++HDNTVTWLA W + +N KYVFL+A S+ KGQSDR K+E
Sbjct: 433 KEAPIPVPNIPGQ-WKGIQHDNTVTWLAHWKENVNGNA-KYVFLSAGSAWKGQSDRAKFE 490
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+L ++ IR YT D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC+
Sbjct: 491 KARELIKHVDKIRKDYTADLKSKVMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCS 550
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDT 748
L+ +V PPN + FDFLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T
Sbjct: 551 LRYEHVTLSPPNTIIFDFLGKDSMRFHQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTT 610
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL +MPGLTAKVFRTYNAS T L +G VA KI Y AN++VAI+CN
Sbjct: 611 TLLNKHLNSMMPGLTAKVFRTYNASWTFQEQLKNTPKNGTVAEKIAAYNTANRDVAILCN 670
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDGKRKRNL 864
HQ++VSK ++ +KI LK LR+ L + KK P L +D ++
Sbjct: 671 HQKSVSKGFEGSFAKAEDKIRALKYQRLKLRLQLFSLNPKIKKKHPELAEDES-----DV 725
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
E +ER A+ +EK + K K D V L
Sbjct: 726 DDEFMERHEAEL---LEKALENAKKKWDTDNVKL 756
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 861 KRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
KR E L ++A+ + +I + ++ ++ LK VALGTSKINY+DPR+TVAW K+ +V
Sbjct: 795 KRGATEEKLLAQVARIDERIATAKVQLQDRDKLKDVALGTSKINYIDPRLTVAWAKKFDV 854
Query: 921 PIEKIFNKSLLAKFAWA-MDVDPEFRF 946
P+EK+F+K+L KF WA + P++ F
Sbjct: 855 PLEKLFSKTLREKFPWAEAEAGPDWVF 881
>gi|363750300|ref|XP_003645367.1| hypothetical protein Ecym_3036 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889001|gb|AET38550.1| Hypothetical protein Ecym_3036 [Eremothecium cymbalariae
DBVPG#7215]
Length = 660
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/635 (43%), Positives = 375/635 (59%), Gaps = 87/635 (13%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
+ D KW TL HNGV+FPP Y LP V++ Y GK V L PE EEVA FA +L++D+
Sbjct: 29 NNDDSVKWVTLRHNGVMFPPEYEPLPSHVRLYYDGKAVELPPEAEEVAGFFAALLESDHA 88
Query: 454 QKPKFRENFWNDWRKLL-----GKNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKK 507
+ P F+ NF+ND+ ++L KN V + + + CDF ++++ Q Q+E++KQ+S +EKK
Sbjct: 89 KNPVFQRNFFNDFLEVLKRYGGAKNGVEVSSFDKCDFSKMFEYLQLQREQRKQLSPQEKK 148
Query: 508 ALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
LK EK++ EE + + +DG KE+VGNFR+EPP LFRGRG HPK GKLK+R+ P D+ +N
Sbjct: 149 QLKLEKDQLEEPFKYCYLDGRKEQVGNFRIEPPDLFRGRGAHPKTGKLKRRVYPEDVVLN 208
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
+ KD IP+ P G W E++HDNTV WL W + I+ FKYV LAA+SS KG SD +K
Sbjct: 209 MDKDAAIPDPP-AGHKWGEIRHDNTVQWLCMWRENIS-NSFKYVRLAANSSQKGMSDFKK 266
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 687
+EKAR+LK YI IR+ Y + S+ RQIAVATYLID ALRAG EK +DEADTVGC
Sbjct: 267 FEKARELKKYIDIIRSDYRRSLKSKVMLERQIAVATYLIDVFALRAGGEKSEDEADTVGC 326
Query: 688 CTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKL 746
C+L+ +V PP + FDFLGKDSI+Y VEV+ V+K + F+ KQ LFD+L
Sbjct: 327 CSLRYEHVTLKPPFTVIFDFLGKDSIRYYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRL 386
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAII 806
D + LN HL+ MPGLTAKVFRTYNAS T+ L+ +G V KI Y AN+ VAI+
Sbjct: 387 DPSILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGSVTEKIVRYNAANRAVAIL 446
Query: 807 CN--------HQRTVSKTHSAQMSRLTEKIEDLKGVL-----------------KDL--- 838
CN H ++ K + +KI K +L KDL
Sbjct: 447 CNHQRTLGRGHAASMQKANEKLEEYQWQKIRYKKAILQLDESELKKNPKYFKEIKDLTKE 506
Query: 839 -------RV--------------DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQ-- 875
RV + ++ K K L+ DS K + E LE++ AQ
Sbjct: 507 EQMAIHKRVIEREREKYKRKFTRENEKRKFDKEELLTDSQLKSWLDDVDE-LEKQYAQEL 565
Query: 876 ----------------TNAKIEKMER-------DMKTKEDLKTVALGTSKINYLDPRITV 912
A++EK+E+ +K KED TVAL TSKI+Y+DPR++V
Sbjct: 566 ETDEIVLKPTLLNVEKLKAQVEKLEQRIATSSIQLKDKEDNSTVALSTSKISYIDPRLSV 625
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+CK++ VP+EKIF K+L KF WA++ D +RF
Sbjct: 626 VFCKKYNVPLEKIFTKALREKFKWAIESADENWRF 660
>gi|295663479|ref|XP_002792292.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278962|gb|EEH34528.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 900
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/453 (52%), Positives = 307/453 (67%), Gaps = 16/453 (3%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGVIFPPPY LP VKM Y G + L PE EEVA F ML++
Sbjct: 261 PTKGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGVPITLAPEAEEVAGFFGSMLNST 320
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND+ + G + I + + CDFKPI+++++ + +KK
Sbjct: 321 HNVENPTFQKNFFNDFTAYVKKSGGAKDPNGNSVAINSFDKCDFKPIFEFYEAARLEKKA 380
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKK LK EK++ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+
Sbjct: 381 LPAAEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGKVKTRVM 440
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 441 PEQITINIGKEAKVP-TPPAGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDIK 498
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR+ Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 499 GQSDYKKFEKARELKKHIDRIRSDYKKGLKQELMAERQKATAVYLIDQFALRAGNEKGED 558
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 559 EADTVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 618
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L G +A KI Y A
Sbjct: 619 DEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTMATLLKGMKSTGTIAEKIKDYNDA 678
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
N++VAI+CNH+RTV+ +HS QM +L ++I+ LK
Sbjct: 679 NRQVAILCNHKRTVTASHSTQMEKLGDRIKGLK 711
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+ + E LE ++ + +IE M + KE+ K VALGTSKINY+DPR+TV + ++ VP
Sbjct: 815 KGVTVEKLENQLLKLGQRIENMSLQAEDKENNKEVALGTSKINYIDPRLTVVFSRKFNVP 874
Query: 922 IEKIFNKSLLAKFAWAM-DVDPEFRF 946
+EK F+K+L KF WA+ VD + F
Sbjct: 875 MEKFFSKTLREKFDWAIKSVDENWEF 900
>gi|393217865|gb|EJD03354.1| hypothetical protein FOMMEDRAFT_20466 [Fomitiporia mediterranea
MF3/22]
Length = 824
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/528 (48%), Positives = 341/528 (64%), Gaps = 20/528 (3%)
Query: 323 KQVTVKVEKKADDDDHIPISQRMKNS-------APSVKKSVTNTAKATKSVSSSSNKINK 375
++ K E ++DD + +R K P KK K +SS++ K
Sbjct: 114 RKAKAKSEDMSEDDKPLTTKKRAKTEPTSDEDIKPKAKKRALKVKKEDDEAEASSSQTTK 173
Query: 376 KTKKVIKNSQYSKSTKMLPG---SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
+ KV + + + + +GDG KW TL HNGV FPPPY LP VKM Y GK
Sbjct: 174 RKGKVDDDEEGEEVFRWWENEDPNGDGSIKWNTLEHNGVYFPPPYEPLPSDVKMKYDGKP 233
Query: 431 VNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN-----HVIQNLEGCDFK 485
VNL P+ EEVA + ML+TD+ Q F +NF+ D+ K+L ++ +I+ + CDF+
Sbjct: 234 VNLPPDSEEVAGFYGQMLETDHAQDAVFNKNFFKDFLKVLEEHPPRDGTMIKEFDRCDFR 293
Query: 486 PIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRG 545
P++D+++ QK KKK M++ EKKA K EK+K E + ++DG KEKVGNFR+EPPGLFRG
Sbjct: 294 PMFDYYEAQKAKKKAMTTAEKKAAKAEKDKVEAPFTTCVLDGRKEKVGNFRIEPPGLFRG 353
Query: 546 RGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINP 605
RGEHP+ G LK R++P D+TINIG+ IP+ +PG+ WK V HD TVTWLA W + +N
Sbjct: 354 RGEHPRKGSLKLRVRPEDVTINIGESATIPKPNMPGK-WKAVIHDQTVTWLANWTENVNG 412
Query: 606 KEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYL 665
KYVFLAA SSLKGQSD K+EKAR+LK+++ IR Y + S+ RQ A A Y
Sbjct: 413 NH-KYVFLAAGSSLKGQSDMMKFEKARELKEHVDRIRKDYNVELRSKLMADRQRATAMYF 471
Query: 666 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPV 725
ID+LALRAGNEK +DEADTVGCC+L+ +V PPN L FDFLGKDSI++ VEVE +
Sbjct: 472 IDRLALRAGNEKGEDEADTVGCCSLRCEHVTLEPPNFLIFDFLGKDSIRFYKRVEVEPQI 531
Query: 726 YKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT- 784
+K I F+ K+ +D LFD++ T LN HL+ M GLTAKVFRTYNASITL L T
Sbjct: 532 FKNIRIFKENKEDSDALFDRVTTTLLNKHLQSYMKGLTAKVFRTYNASITLQQQLEVYTP 591
Query: 785 GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
DG V K++ + +AN+ VAI+CNHQR+V KTHSA M ++T+K+ +K
Sbjct: 592 SDGSVQEKLNAFNKANRMVAILCNHQRSVPKTHSASMEKMTDKLRAIK 639
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 11/125 (8%)
Query: 822 SRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIE 881
S L E+I+D++ K R++ +R GK L KR E +E + + +I+
Sbjct: 711 SELQERIKDIEDEFK--RLEKERGT-GKASL--------KRARPVEKIEEAIEKLTERIK 759
Query: 882 KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVD 941
+ M +E+ K VALGTSKINYLDPRIT AWCK + VPIEKIF+K+LLAKF WAM+VD
Sbjct: 760 THKLQMVDREEGKEVALGTSKINYLDPRITQAWCKEYSVPIEKIFSKTLLAKFPWAMEVD 819
Query: 942 PEFRF 946
++RF
Sbjct: 820 KDWRF 824
>gi|405122155|gb|AFR96922.1| topoisomerase I [Cryptococcus neoformans var. grubii H99]
Length = 886
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 260/514 (50%), Positives = 337/514 (65%), Gaps = 22/514 (4%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KWT L HN V+FPPPY LP VKM Y G + L PE EEVA F +L+TDY Q
Sbjct: 258 GDGSSKWTVLEHNAVLFPPPYVPLPKDVKMKYDGVSLTLPPESEEVAGFFGALLETDYAQ 317
Query: 455 KPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
KFRENF+ D++ ++ K + ++ LE CDF+P++++ +++KEKKK ++ EEKKA+
Sbjct: 318 DAKFRENFFRDFKAIVEKYPPKEDVKVKKLEKCDFRPMFEYFEKEKEKKKALTKEEKKAI 377
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K EK+K E Y++A VDG KEKVGNFR EPPGLF+GRGEHPK G +K R++P DI INIG
Sbjct: 378 KAEKDKLEAPYLYANVDGRKEKVGNFRAEPPGLFKGRGEHPKKGTVKNRLRPEDIIINIG 437
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ PIP IPG+ WK ++HDNTVTWLA W + +N KYVFL+A S+ KGQSDR K+E
Sbjct: 438 KEAPIPVPNIPGQ-WKGIQHDNTVTWLAHWKENVNGNA-KYVFLSAGSAWKGQSDRAKFE 495
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+L ++ IR YT D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC+
Sbjct: 496 KARELIKHVDKIRKDYTADLKSKIMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCS 555
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDT 748
L+ +V PPN + FDFLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T
Sbjct: 556 LRYEHVTLSPPNTIIFDFLGKDSMRFHQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTT 615
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL +MPGLTAKVFRTYNAS T L +G VA KI Y AN++VAI+CN
Sbjct: 616 TLLNKHLNGMMPGLTAKVFRTYNASWTFQEQLKNTPTNGTVAEKIAAYNTANRDVAILCN 675
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDGKRKRNL 864
HQ++VSK ++ +KI LK LR+ L + KK P L +D ++
Sbjct: 676 HQKSVSKGFEGSFAKAEDKIRALKYQRLKLRLQLFSLNPKIKKKHPELAEDES-----DV 730
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
E +ER A+ +EK + K K D V L
Sbjct: 731 DDEFMERHEAEL---LEKALENAKKKWDTDNVKL 761
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 12/124 (9%)
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L E++ ++K K+L+ + +AKK P KR E L ++A+ + +I
Sbjct: 774 LDERLSEIKAEFKELKKER-KAKKIDP----------KRGATEEKLLAQIARIDERIATA 822
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA-MDVDP 942
+ ++ ++ LK VALGTSKINY+DPR+TVAW K+ +VP+EK+F+K+L KF WA + P
Sbjct: 823 KVQLQDRDKLKDVALGTSKINYIDPRLTVAWAKKFDVPLEKLFSKTLREKFPWAEAEAGP 882
Query: 943 EFRF 946
++ F
Sbjct: 883 DWVF 886
>gi|328353528|emb|CCA39926.1| DNA topoisomerase I [Komagataella pastoris CBS 7435]
Length = 625
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 267/618 (43%), Positives = 369/618 (59%), Gaps = 102/618 (16%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L HNGV+FPP + LP VK+ Y K V+L + EEVA F
Sbjct: 22 KWHSLKHNGVLFPPEHVPLPSHVKLYYDKKPVDLPIQAEEVACFF--------------- 66
Query: 460 ENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
D++K++ G N I++ + CDF I+D ++ QK KK +++ +K+ +K EK+K
Sbjct: 67 -----DFKKIVLEHGGANVEIESFDKCDFSKIFDHYETQKSLKKSLTAAQKREIKSEKDK 121
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
EEKY + +++G +E+VGNFR+EPPGLFRGRG HPK G++KKRI P D+++N+ +D PIP
Sbjct: 122 FEEKYKYCLLNGRRERVGNFRIEPPGLFRGRGSHPKTGRVKKRIYPEDVSLNLSEDAPIP 181
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
P G WKE+KHDNTV WLA W + + KYV AA SSLKG+SD +K+EKAR+LK
Sbjct: 182 PPP-EGHQWKEIKHDNTVAWLATWRENVT-NTVKYVLFAADSSLKGRSDFKKFEKARELK 239
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
YIH IR Y K+F S+ RQ+AVATYLID ALRAG EK +DEADTVGCC+L+ +V
Sbjct: 240 KYIHRIRKDYKKNFSSKVMLERQMAVATYLIDVFALRAGGEKAEDEADTVGCCSLRYEHV 299
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAH 754
PPN + FDFLGKDSI+Y V V V+K + F+ KQ DDLFD+L LN H
Sbjct: 300 TLKPPNTVVFDFLGKDSIRYYQEVNVHEKVFKNLRLFKKSPKQPGDDLFDRLTPNILNKH 359
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
L+ +PGL+AKVFRTYNAS T+ L+ +G V K+ Y AN+EVAI+CNHQRT
Sbjct: 360 LQNYLPGLSAKVFRTYNASKTMQDQLDLIPNEGSVGEKVVKYNAANREVAILCNHQRTKP 419
Query: 815 KTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRA-KKGKPPLMKDSDG------------ 858
K+H + R+++ I +L K LK + ++LD++ KK KP ++ D
Sbjct: 420 KSHDMGVQRISDNIRELFWQKLRLKRMILELDKSLKKTKPYYFEELDDLSVEEEQAIQDR 479
Query: 859 -----------KRKRN----------LAPEA-LERKMAQTN------------------- 877
K R+ L PEA LE K+ + +
Sbjct: 480 VIAKEREKATKKFTRDNEKLKTEDSPLLPEAMLEEKLKKIDELAAEYKKELKTRKPEIKS 539
Query: 878 ---------AKIEKMERDMKT-------KEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+++EK+E+ ++ KED VALGTSK+NY+DPR+T + K+++VP
Sbjct: 540 VTVTVEKLESQVEKLEQRIRNATLLLQDKEDNSQVALGTSKLNYIDPRLTAMFSKKYDVP 599
Query: 922 IEKIFNKSLLAKFAWAMD 939
IEK+F+K+L KFAWA++
Sbjct: 600 IEKLFSKTLREKFAWAIE 617
>gi|452980030|gb|EME79792.1| hypothetical protein MYCFIDRAFT_87962 [Pseudocercospora fijiensis
CIRAD86]
Length = 881
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 326/838 (38%), Positives = 445/838 (53%), Gaps = 123/838 (14%)
Query: 214 VNQGIGASKADAAISEVNVK--TDPEDSDDEVPLSSRFPKSNAGTSGAK--PIDSDEKKP 269
N +K A+++ N K + ED DD VPL R K+ + S P+ KP
Sbjct: 62 TNGASSGTKRKASLANGNYKDASSSEDEDD-VPLKKRKTKATSDESDEDDVPLVKKVHKP 120
Query: 270 LASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKV 329
+ K Q G ++S P+ + LQK + A+K + SKE +
Sbjct: 121 ITLKAAQIG-------EESGDEPIAKKLQKEKQAIEKKAEKEAKAIRSKEANGTKKKAVK 173
Query: 330 EKKADDDDHIPISQRMK----NSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQ 385
++ +D DD +P+ ++ N ++S + K + + K+ +K +
Sbjct: 174 KQASDSDDDVPLKKKAPAKKANGKVKKEESSDDDKPLKKKAPAKKTAVKKEAATPVKKGK 233
Query: 386 YSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATM 443
P GDG KWTTL HNGV+FPP Y LP VKM Y G V++ E EE+A
Sbjct: 234 GKYRWWEDPQKGDGTTKWTTLEHNGVVFPPEYEPLPKNVKMNYDGVPVSMHIEAEEIAYA 293
Query: 444 FAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQ 492
F ML++ + ++ P F++NF+ D++++L G+ I E CDFKPI++
Sbjct: 294 FGAMLNSTHNVENPTFQKNFFADFKEVLDRTGHATDSKGEKVKITKFEKCDFKPIFNHVD 353
Query: 493 EQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 552
++ KK +S EKK LK EK++ E YM+ + DG K+KVGNFRVEPPGLFRGRGEHPK
Sbjct: 354 AERAAKKALSGAEKKKLKAEKDEAEAPYMYCMWDGRKQKVGNFRVEPPGLFRGRGEHPKT 413
Query: 553 GKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVF 612
GK KKR+QP ITINIGK+ +P+ P G WKEVKHD TWLA W + IN +KYV
Sbjct: 414 GKWKKRVQPEQITINIGKEAMVPKPP-EGHQWKEVKHDQEGTWLAMWQENINGA-YKYVM 471
Query: 613 LAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
LAA+S +KGQSD +K+EKAR+LK +I IR Y K+ S RQ A A YLID+ ALR
Sbjct: 472 LAANSDIKGQSDYKKFEKARELKKHIDRIRKDYEKELKSEIMAERQRATAMYLIDRFALR 531
Query: 673 AGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF 732
AGNEK +DEADTVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F
Sbjct: 532 AGNEKGEDEADTVGCCSLKFENVTLSPPNKVIFDFLGKDSIRFYDEVEVDHQVFKNLKIF 591
Query: 733 QT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV 791
+ KK D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L + +G +A
Sbjct: 592 KRPPKKDGDEIFDRLTTSGLNKHLSNYMQGLTAKVFRTYNASYTMSQLLQEMKAEGTIAE 651
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK---G 848
K+ Y AN+ VAI+CNH+RTV+ +H+ QM ++ EKI K LR R K+
Sbjct: 652 KVLAYNNANRRVAILCNHKRTVAASHAQQMEKMEEKI-------KGLRYQQYRVKQMILA 704
Query: 849 KPPLMKDSDGKRKRNLAPEALER--------------------KMAQTNAKIE-KMERDM 887
P +K G+ L PE L+R K + N K+E + E+ M
Sbjct: 705 TEPKLKKKKGEDYFAL-PEGLDREWQEKHHEVLVEEARTKVQKKFDKENEKLEAEGEKPM 763
Query: 888 KTKE-----------------DLKT---VALGTSK--------INYLDPRI--------- 910
K KE +LKT V G S I LD RI
Sbjct: 764 KAKELEQRMEPVKELEAKLKKELKTGKVVPEGKSATVEKYEKDIEKLDARIATMEMQAED 823
Query: 911 ---------------------TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+ +VPIE+ F+K+L KF WA+ VD ++ F
Sbjct: 824 RDNNKEVALGTSKINYIDPRLTVVFSKKFDVPIERFFSKTLREKFDWAIKSVDEDWEF 881
>gi|255935477|ref|XP_002558765.1| Pc13g03270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583385|emb|CAP91396.1| Pc13g03270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 864
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/640 (43%), Positives = 380/640 (59%), Gaps = 92/640 (14%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-M 453
GDG KWTTL HNGV+FPP Y LP VKM Y G + L PE EEVA+ F ML++ + +
Sbjct: 227 GDGTIKWTTLEHNGVVFPPEYELLPQNVKMKYDGIPITLAPEAEEVASFFGTMLNSTHNV 286
Query: 454 QKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSS 503
+ P F++NF++D++ ++ K N V I+ CDFKPI++++ Q+E+K+ +
Sbjct: 287 ENPVFQKNFFSDFKDVIKKSGGAKDSKGNKVDIKEFAKCDFKPIFEFYDAQREEKRHLPP 346
Query: 504 EEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
EKKA K K++QE Y + I DG K+KVGNFRVEPP LFRGRGEHPK G++K R+QP
Sbjct: 347 AEKKAAKALKDEQEAPYQYCIWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVKTRVQPEQ 406
Query: 564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
ITINIGKD +P P PG WKEVKHD TWLA W + IN +KYV LAA+S +KGQS
Sbjct: 407 ITINIGKDAKVPPPP-PGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDVKGQS 464
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D +K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGNEK +DEA+
Sbjct: 465 DFKKFEKARELKKHIEKIRKDYQKNLKHDMMVERQKATAVYLIDQFALRAGNEKGEDEAE 524
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK NV PPN + FDFLGKDSI++ + V+V+L V+K + F+ K+N D++
Sbjct: 525 TVGCCSLKYENVTLKPPNTVVFDFLGKDSIRFYDEVQVDLQVFKNLKIFKKAPKKNGDEI 584
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +LN+ G +A K+ Y AN+
Sbjct: 585 FDRLTTSALNKHLANYMPGLTAKVFRTYNASYTMGCVLNEMNASGGTIAEKVKAYNDANR 644
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLMKD 855
+VAI+CNH+RTV+ H+ M ++ E+I+ L K LK +DLD + KKG D
Sbjct: 645 KVAILCNHKRTVTAGHANAMEKMGERIKGLRYQKWRLKQQMLDLDPTLKKKKGAAFFEID 704
Query: 856 SDGKRKRNLAPEA--LERKMAQTNAKIEK--------MERDMKT---KEDLKTV------ 896
D ++ +A +E + + N K EK E++MK +E L+ V
Sbjct: 705 EDLDKEWIEEHQAFLIEEQRNKINKKFEKDNEKRVADGEKEMKVSELEERLQAVKELEKK 764
Query: 897 -------------ALGTS------KINYLDPRI--------------------------- 910
A G + IN +D R+
Sbjct: 765 FKKENKTGKVEAEARGATVEKLENSINKIDQRVETMSVQAQDKEDNKEVALGTSKINYID 824
Query: 911 ---TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+++VPIEK F+K+L KF WA+ VD ++ F
Sbjct: 825 PRLTVVFSKKYDVPIEKFFSKALREKFEWAIKSVDEDWEF 864
>gi|3172248|gb|AAC18442.1| topoisomerase I [Cryptococcus neoformans var. grubii]
Length = 844
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 260/514 (50%), Positives = 337/514 (65%), Gaps = 22/514 (4%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KWT L HN V+FPPPY LP VKM Y G + L PE EEVA F +L+TDY Q
Sbjct: 216 GDGSSKWTVLEHNAVLFPPPYVPLPKDVKMKYDGVSLTLPPESEEVAGFFGALLETDYAQ 275
Query: 455 KPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
KFRENF+ D++ ++ K + ++ LE CDF+P++++ +++KEKKK ++ EEKKA+
Sbjct: 276 DAKFRENFFRDFKAIVEKYPPKEDVKVKKLEKCDFRPMFEYFEKEKEKKKALTKEEKKAI 335
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K EK+K E Y++A VDG KEKVGNFR EPPGLF+GRGEHPK G +K R++P DI INIG
Sbjct: 336 KAEKDKLEAPYLYANVDGRKEKVGNFRAEPPGLFKGRGEHPKKGTVKNRLRPEDIIINIG 395
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ PIP IPG+ WK ++HDNTVTWLA W + +N KYVFL+A S+ KGQSDR K+E
Sbjct: 396 KEAPIPVPNIPGQ-WKGIQHDNTVTWLAHWKENVNGNA-KYVFLSAGSAWKGQSDRAKFE 453
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+L ++ IR YT D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC+
Sbjct: 454 KARELIKHVDKIRKDYTADLKSKIMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCS 513
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDT 748
L+ +V PPN + FDFLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T
Sbjct: 514 LRYEHVTLSPPNTIIFDFLGKDSMRFHQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTT 573
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL +MPGLTAKVFRTYNAS T L +G VA KI Y AN++VAI+CN
Sbjct: 574 TLLNKHLNGMMPGLTAKVFRTYNASWTFQEQLKNTPTNGTVAEKIAAYNTANRDVAILCN 633
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDGKRKRNL 864
HQ++VSK ++ +KI LK LR+ L + KK P L +D ++
Sbjct: 634 HQKSVSKGFEGSFAKAEDKIRALKYQRLKLRLQLFSLNPKIKKKHPELAEDES-----DV 688
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
E +ER A+ +EK + K K D V L
Sbjct: 689 DDEFMERHEAEL---LEKALENAKKKWDTDNVKL 719
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 12/124 (9%)
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L E++ ++K K+L+ + +AKK P KR E L ++A+ + +I
Sbjct: 732 LDERLSEIKAEFKELKKE-RKAKKIDP----------KRGATEEKLLAQIARIDERIATA 780
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA-MDVDP 942
+ ++ ++ LK VALGTSKINY+DPR+TVAW K+ +VP+EK+F+K+L KF WA + P
Sbjct: 781 KVQLQDRDKLKDVALGTSKINYIDPRLTVAWAKKFDVPLEKLFSKTLREKFPWAEAEAGP 840
Query: 943 EFRF 946
++ F
Sbjct: 841 DWVF 844
>gi|154336693|ref|XP_001564582.1| DNA topoisomerase IB, large subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061617|emb|CAM38648.1| DNA topoisomerase IB, large subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 637
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/443 (53%), Positives = 307/443 (69%), Gaps = 5/443 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLSHNGVLFPPEYEPHGISIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEAF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY W+ ++EKK + EEKK++KE+++
Sbjct: 102 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWYLAEREKKLNRTKEEKKSIKEKQDMDA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP ITINIG+ +P
Sbjct: 162 EPYRYCMWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKARVQPEGITINIGETAEVP-V 220
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LAASSS+KGQSD K+EKARKLKD
Sbjct: 221 PPAGHKWGAVQHDHTVTWLAMWRDSVVGNA-KYVMLAASSSVKGQSDMMKFEKARKLKDK 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 280 VDDIRASYMEDFKSNDVHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+ N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 340 MSDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGTDIFDQLNPTQLNDHLKS 399
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGDG--DVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + D +A K+ + +AN EVAI+CNHQ+ +SK
Sbjct: 400 FMNGLSAKVFRTYNASITLDRWFKEKPVDSKWSIADKLAYFNKANTEVAILCNHQKAISK 459
Query: 816 THSAQMSRLTEKIEDLKGVLKDL 838
QM +LT K E + +++ L
Sbjct: 460 NFKLQMMQLTTKSEYTRKMIELL 482
>gi|225677787|gb|EEH16071.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
Length = 905
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/453 (52%), Positives = 307/453 (67%), Gaps = 16/453 (3%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGVIFPPPY LP VKM Y G + L PE EEVA F ML++
Sbjct: 266 PTKGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGVPITLAPEAEEVAGFFGSMLNST 325
Query: 452 Y-MQKPKFRENFWNDWRKLLGKNH----------VIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND+ + K+ I + + CDFKPI+++++ + +KK
Sbjct: 326 HNVENPTFQKNFFNDFTAYVKKSGGAKDPNGNPVAINSFDKCDFKPIFEFYEAARLEKKA 385
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKK LK EK++ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+
Sbjct: 386 LPATEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGKVKTRVM 445
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 446 PEQITINIGKEAKVP-IPPAGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDIK 503
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR+ Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 504 GQSDYKKFEKARELKKHIDRIRSDYKKGLKQELMAERQKATAVYLIDQFALRAGNEKGED 563
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 564 EADTVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 623
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L G +A KI Y A
Sbjct: 624 DEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTMATLLKGMKSTGTIAEKIKDYNDA 683
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
N++VAI+CNH+RTV+ +HS QM +L ++I+ LK
Sbjct: 684 NRQVAILCNHKRTVTASHSTQMEKLGDRIKGLK 716
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+ + E LE ++ + +IE M + KE+ K VALGTSKINY+DPR+TV + ++ VP
Sbjct: 820 KGVTVEKLENQLLKLGQRIENMSLQAEDKENNKEVALGTSKINYIDPRLTVVFSRKFNVP 879
Query: 922 IEKIFNKSLLAKFAWAM-DVDPEFRF 946
+EK F+K+L KF WA+ VD + F
Sbjct: 880 MEKFFSKTLREKFDWAIKSVDENWEF 905
>gi|2501243|sp|Q00313.1|TOP1_CANAL RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|1465731|gb|AAC49381.1| topoisomerase type I [Candida albicans]
Length = 778
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/631 (44%), Positives = 377/631 (59%), Gaps = 84/631 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 151 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 210
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P F++NF+ND+ ++L G I+ E DF +Y ++ +E+KK MS EEKK +K
Sbjct: 211 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 270
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EEK K+EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ +T+N+GK
Sbjct: 271 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVSEQVTLNLGK 330
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 331 DAKIPEPP-AGHQWGEIRHDNEVTWLAMWKENISD-SLKYVRFANNSSVKGQSDFKKFET 388
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 389 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 448
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FD LGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 449 RYEHVTLKPPNKVIFDLLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 508
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 509 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 568
Query: 810 QRTVSKTHSAQMSRLTEKI-------------------------------------EDLK 832
QRTVSKTH + R+ +K+ ED++
Sbjct: 569 QRTVSKTHGDSVQRINDKLKKFMWQKIRLKKMILQLEPKLKKKDSKYFEEIDDLIKEDIE 628
Query: 833 GVL------------KDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERK-------- 872
+ K L D ++ K PL+ +SD K K + E LE++
Sbjct: 629 HIHHTIIKRQREQAKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDE-LEKEYQKELKTG 687
Query: 873 --MAQTNAKIEKMERDMKT--------------KEDLKTVALGTSKINYLDPRITVAWCK 916
+ NA +EK+++ ++T KED V+LGTSK+NY+DPR+ V + K
Sbjct: 688 KPIVTKNATVEKLKQQIETLENRILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSK 747
Query: 917 RHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+ +VPIEK+F K+L KF WA++ D +RF
Sbjct: 748 KFDVPIEKLFTKTLREKFIWAIESADENWRF 778
>gi|354543170|emb|CCE39888.1| hypothetical protein CPAR2_603070 [Candida parapsilosis]
Length = 821
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/633 (42%), Positives = 373/633 (58%), Gaps = 84/633 (13%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
G DG+ KW +L HNGV+FPPPY LP VK+ Y GK VNL E EEVA F M++TD+
Sbjct: 192 GDNDGEIKWQSLEHNGVMFPPPYEPLPSHVKLYYDGKPVNLPIEAEEVAGFFGAMVETDH 251
Query: 453 MQKPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
+ P F+ NF+ D++++L G I + DF ++ + ++++E+KK MS +EK+
Sbjct: 252 AKNPVFQSNFFQDFQQVLKECGGCGVEISDFNKLDFSKMHAYFEKKREEKKAMSKDEKRR 311
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
LKEEK K EE Y +++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+
Sbjct: 312 LKEEKEKIEEPYKTCLLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVYPEQVTLNL 371
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
+P+ P PG W EV+HDN VTWLA W + I FKYV AA+SS+KGQSD +K+
Sbjct: 372 SAHAKVPDPP-PGHQWAEVRHDNEVTWLAMWKENI-ADSFKYVRFAANSSVKGQSDFKKF 429
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
E AR+L+ Y+ +IR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC
Sbjct: 430 ETARELRKYVDAIRKDYTKMLKSEKMQDRQMATAMYLIDVYALRAGGEKGEDEADTVGCC 489
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLD 747
+L+ ++ PPN + FDFLGKDSI++ VEV V+K + F+ KQ D+LFD+++
Sbjct: 490 SLRFEHITLKPPNTVIFDFLGKDSIRFYQEVEVSKQVFKNLRIFKKEPKQPGDNLFDRIN 549
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIIC 807
+ +N L+ M GLTAKVFRTYNAS T+ L+ +G A K+ + AN+ VAI+C
Sbjct: 550 PSMVNKQLQNYMKGLTAKVFRTYNASKTMQDQLDLIPNEGTAAEKVVKFNAANRTVAILC 609
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDL------------------------------------ 831
NHQRTVSK H + ++++K+++L
Sbjct: 610 NHQRTVSKNHGNSVQKISDKLKELTWQKIRTKKMLLQLDPKLKKKDPKYFEELDDLVKED 669
Query: 832 -------------KGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERK------ 872
+ V+K L D ++ K K PL+ D K K + E LE++
Sbjct: 670 IEHIHHSIIERQKQQVMKKLERDNEKLKIEKKPLLTKKDIKEKLDKIHE-LEKQYKKELK 728
Query: 873 -----------MAQTNAKIEKMER-------DMKTKEDLKTVALGTSKINYLDPRITVAW 914
+ + +IE E +K KED V+LGTSK+NY+DPR+TV +
Sbjct: 729 TGKPELPAKMTVEKCYQQIETFENRIVATSLQLKDKEDNSEVSLGTSKMNYIDPRLTVMF 788
Query: 915 CKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEK+F K+L KF WA++ D +RF
Sbjct: 789 SKKYDVPIEKLFTKTLREKFKWAIESADENWRF 821
>gi|392578649|gb|EIW71777.1| hypothetical protein TREMEDRAFT_43061 [Tremella mesenterica DSM
1558]
Length = 859
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 306/715 (42%), Positives = 432/715 (60%), Gaps = 57/715 (7%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
K+PVR+PV SP +ES DD L S + N G K ++ SED+KP
Sbjct: 10 KNPVRAPVVSP----EES---DDELPLSRKVNG-------------GRKRVNSSSEDEKP 49
Query: 203 LSARLKGNSK-----NVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTS 257
L+ + + +S + + S+ ++ D E S+DE PL+ + P N T
Sbjct: 50 LAKKSRPSSAKRPVFSEEESTPGPSVKNEESDSSLSEDSEISEDEKPLAKKRPSMNGKTK 109
Query: 258 GAK-PID-SDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSD 315
A P + S+++KPLA K +++ +S ++PL K ++ P+ S
Sbjct: 110 KATVPSEASEDEKPLAKKRPSMNGKTKKAPVESEESEDEKPLAKKKAA-------PRKSA 162
Query: 316 TSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINK 375
T + K K V++++ +D P++++ K+SA + K K + K K
Sbjct: 163 TPAKTKAK-----VKQESSSEDEKPLAKKGKSSAANGK----GKGKEETEIKKERAKKIK 213
Query: 376 KTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNL 433
+ ++ K + + + DG KWTTL HNG++FPPPY LP GVKM Y G + L
Sbjct: 214 EEEEEDKYKWWEEQE----ANNDGSVKWTTLEHNGILFPPPYIPLPKGVKMKYDGVSLTL 269
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-----IQNLEGCDFKPIY 488
PE EEVA FA ML+TD+ Q KF+ENF+ D++ +L ++ +++LE CDF+P++
Sbjct: 270 PPESEEVAGFFAAMLETDHAQDEKFKENFFRDFQAVLDEHPPKEGVKVKSLEKCDFRPMF 329
Query: 489 DWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 548
+ +++KEKKK M+ EEKK +KE+K+K E Y++A +DG KEK+GNFR EPPGLFRGRGE
Sbjct: 330 EHFEKEKEKKKSMTKEEKKKIKEDKDKLEAPYLYATIDGRKEKLGNFRAEPPGLFRGRGE 389
Query: 549 HPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEF 608
HPK G LK R++P DI +NIG++ P+P IPG +WK+++HDNTVTWLA W + +N +
Sbjct: 390 HPKKGTLKLRLRPEDIILNIGENAPVPVPNIPG-TWKDLQHDNTVTWLAHWKENVNGQS- 447
Query: 609 KYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDK 668
KYVFL+A SS KGQSDR K+EKAR+L ++ IR YT+D S+ RQ A A Y ID+
Sbjct: 448 KYVFLSAGSSWKGQSDRSKFEKARELIKHVDRIRKDYTEDLKSKIMADRQRATALYFIDR 507
Query: 669 LALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKA 728
LALRAGNEK +DEADTVGCC+L+ +V PPNK+ FDFLGKDS+++ VEV+ V+K
Sbjct: 508 LALRAGNEKGEDEADTVGCCSLRYEHVTLEPPNKVIFDFLGKDSMRFHQEVEVDAQVFKN 567
Query: 729 IGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG 787
I F+ K + DDLFD+L T LN +L M GLTAKVFRTYNAS T L DG
Sbjct: 568 IRIFKAEPKGKGDDLFDRLTTTGLNQYLNGQMKGLTAKVFRTYNASWTFQQQLKHTPKDG 627
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
VA KI Y AN++VAI+CNHQ+TVSK + +++ +K+ LK LR L
Sbjct: 628 TVAEKIAAYNTANRDVAILCNHQKTVSKGFAESFAKMGDKVRALKYQRMKLRYQL 682
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L E+++++KG K+L + + KK +P +R + + L + + + +I
Sbjct: 747 LDERLKEIKGEFKELTKE-RKTKKVEP----------RRGMTEQKLLDAITRMDERIATA 795
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA 937
+ M ++ LK VAL TSKINY+DPR+TVAW K+++VP+EK+F K+L KF WA
Sbjct: 796 KIQMGDRDKLKDVALSTSKINYIDPRLTVAWAKKYDVPLEKLFQKALREKFPWA 849
>gi|294658456|ref|XP_460799.2| DEHA2F09988p [Debaryomyces hansenii CBS767]
gi|202953144|emb|CAG89140.2| DEHA2F09988p [Debaryomyces hansenii CBS767]
Length = 789
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 315/811 (38%), Positives = 439/811 (54%), Gaps = 142/811 (17%)
Query: 238 DSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPL 297
D DD++PLS KS TS +DS+ +++ Q++GS
Sbjct: 19 DQDDDMPLSQISSKSTDTTS----VDSN-----STEGQKSGSK----------------- 52
Query: 298 QKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPIS-----------QRMK 346
+KASS AKK VK + TVK E D+++ P++ ++
Sbjct: 53 RKASSPTGHKAKK---------VKRSKNTVKSE---SDEENTPLASTTAPPPKKTSKKKS 100
Query: 347 NSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSG--------- 397
S + ++ T +K KS S+ KK +V K + ST+
Sbjct: 101 ESGTAKPRNGTKKSKGAKSTGSNKTDAVKKEDEVAKTEKDPSSTREDEEDEEKYKWWEAE 160
Query: 398 --DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
DG++KW +L HNGVIFPP Y LP VK+ Y GK V+L E EEVA F M +TD+
Sbjct: 161 DVDGEQKWESLEHNGVIFPPDYEPLPSHVKLYYDGKPVDLPLEAEEVAGFFGAMAETDHA 220
Query: 454 QKPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
+ P F++NF+ D+ K+L G N I + DF ++ + +++KK +S +EKKA+
Sbjct: 221 KNPTFQKNFFEDFCKVLKDAGGCNVNIIDFHRMDFSKMHAHFEMLRDQKKLLSKDEKKAI 280
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K EK+K EE Y +++G KE+VGNFR+EPPGLFRGRG HPK GKLK+R+ P D+T+N+
Sbjct: 281 KAEKDKFEEPYKTCLLNGHKEQVGNFRIEPPGLFRGRGAHPKTGKLKRRVMPEDVTLNLS 340
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
+ IPE P G W EV+HDNTV+WLA W + I FKYV AA+SS+KG SD +K+E
Sbjct: 341 EGCKIPEPP-QGHKWAEVRHDNTVSWLAMWKENI-ADSFKYVRFAANSSIKGLSDFKKFE 398
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
+RKL+ +I IR YTK RQ+A A YLID ALRAG EK DDEADTVGCC+
Sbjct: 399 TSRKLRYHIDEIRKDYTKMLKDPLMQNRQMATACYLIDIFALRAGGEKGDDEADTVGCCS 458
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ ++ PPNK+ FDFLGKDSI++ VEVE V+K + F+ KQ DDLFD++
Sbjct: 459 LRYEHITLKPPNKVIFDFLGKDSIRFYQEVEVEKQVFKNLRIFKKPPKQPGDDLFDRISP 518
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN + M GLTAKVFRTYNAS T+ L+ +G VA K+ + AN+ VAI+CN
Sbjct: 519 PLLNKQFQNYMKGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKVVKFNAANRTVAILCN 578
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPP--------LMKDSD 857
HQRTVSKTH + + ++ +K+++L K K + + L+ K K P L K+
Sbjct: 579 HQRTVSKTHGSSVQKIHDKLKELEWHKIRTKKMILQLEPNLKTKDPDYFEELDDLSKEDT 638
Query: 858 GKRKRNL---APEALERKMAQTNAKI--------------EKMER----DMKTKEDLKT- 895
R L A EA ++ + N K+ EKME+ + + E+LKT
Sbjct: 639 EHIHRALIERAREAARKRFQRENDKLKIEDKPLLTEKDLEEKMEKVNELEKEYAEELKTG 698
Query: 896 ---------------------------------------VALGTSKINYLDPRITVAWCK 916
V+LGTSK+NY+DPR+TV + K
Sbjct: 699 KPQIKKSVTVEKLKSQVDTLTNRILNTTFQLKDKEDNSEVSLGTSKMNYIDPRLTVMFSK 758
Query: 917 RHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+ VPIEK+F K+L KF WA++ D ++F
Sbjct: 759 KFNVPIEKLFTKTLRDKFNWAIESADENWKF 789
>gi|8132028|gb|AAF73185.1|AF150877_1 DNA topoisomerase I [Leishmania donovani donovani]
Length = 949
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/443 (54%), Positives = 308/443 (69%), Gaps = 6/443 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 357 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 416
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY WH Q+EKK + EEKKA+KE+++ +
Sbjct: 417 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEA 476
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ +P
Sbjct: 477 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVP-V 535
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLKD
Sbjct: 536 PPAGHKWAAVQHDHTVTWLAMWRDSVA-GNMKYVMLAPSSSVKGQSDMVKFEKARKLKDK 594
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 595 VDDIRASYMEDFKSNDLHVAQRAVAMY-IDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 653
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+P N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 654 MPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKS 713
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRTVSK 815
M GL+AKVFRTYNASITLD + D A K+ + +AN EVAI+CNHQ++VSK
Sbjct: 714 FMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSK 773
Query: 816 THSAQMSRLTEKIEDLKGVLKDL 838
QM +LT K E + ++ L
Sbjct: 774 NFKLQMMQLTTKSEYTRKTIELL 796
>gi|444729226|gb|ELW69653.1| DNA topoisomerase 1 [Tupaia chinensis]
Length = 730
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/557 (48%), Positives = 345/557 (61%), Gaps = 42/557 (7%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 204 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 263
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 264 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 323
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 324 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 382
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 383 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 441
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 442 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 501
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE T L
Sbjct: 502 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVE-----------------------KRTGIL 538
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 539 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 598
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT M L KI+ K L D R DL A K +MKD+ K+ E+ +
Sbjct: 599 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 653
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 654 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 713
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 714 REKFAWAIDMADEDYEF 730
>gi|402587841|gb|EJW81775.1| DNA topoisomerase 1 [Wuchereria bancrofti]
Length = 691
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 296/738 (40%), Positives = 417/738 (56%), Gaps = 81/738 (10%)
Query: 232 VKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSV 291
VK + +D+++PLS + A+ I D+ PLA K++ + + V
Sbjct: 5 VKKEDMSNDEDIPLSQK----------ARMIMDDDDIPLAKKLK-TMKDAHDDDDDDDDV 53
Query: 292 PVK---RPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQR---- 344
P+ +P ++ S ++A +V + V+ + + DD +P+S R
Sbjct: 54 PLSQKAKPQKRLSEVVMATASSSRVKKPLSSSTLSSTKKMVKTELESDDDVPLSVRAATL 113
Query: 345 MKNSAPSVKKSVTNTAKATKSVSSSSNKI---NKKTKKVIKNSQYSKSTKM--LPGSGDG 399
K K+ N+++ K+ +S+S KI N+K + N + + + + +
Sbjct: 114 TKKRKKKKKEKRKNSSERKKASTSNSEKIHIKNEKANGITSNKRKRREEEEEDIWKWWEE 173
Query: 400 QKK-----WTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
+KK W +L H G IF PPY LP + Y GK + L P EEV T
Sbjct: 174 EKKPSGIKWYSLSHKGPIFAPPYVPLPESIHFKYDGKVMKLAPLTEEVMT---------- 223
Query: 453 MQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
P RE I +L CDF+ ++D + + +E+++ +S EEK+ LKE
Sbjct: 224 ---PAEREK--------------ITDLTKCDFREMHDHYVKLREERRSLSKEEKQKLKEI 266
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
K ++ + Y A +DG K+K+GNFR+EPP LFRGRG HPKMG+LKKR+ P D+ IN KD
Sbjct: 267 KQEEAKMYGVAYIDGHKQKIGNFRIEPPDLFRGRGGHPKMGRLKKRVNPEDVIINCSKDS 326
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
IP+ P G WKEV+HDNTVTWL W D I KY+ L SS +KG+ D EK+E AR
Sbjct: 327 EIPKPP-EGHRWKEVRHDNTVTWLCSWTDNI-LGSIKYIMLNPSSKIKGEKDYEKFETAR 384
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLK 691
+LKD + SIR YTKD S++ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+L+
Sbjct: 385 RLKDIVGSIRENYTKDLKSKEMRVRQRAVALYFIDKLALRAGNEKDMDEAADTVGCCSLR 444
Query: 692 VGNV---ECIPPNK--LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKL 746
++ E + N ++FDFLGKDSI+Y N V VE V+K + F K +DDLFD+L
Sbjct: 445 CEHIQLHEKLDDNDYVVEFDFLGKDSIRYYNKVPVEKRVFKNLKLFMENKSGSDDLFDRL 504
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV-YQRANKEVAI 805
DTA LN +L+ LM GLTAKVFRTYNASITL L+K T D ++ + Y RAN++VAI
Sbjct: 505 DTASLNKYLQSLMLGLTAKVFRTYNASITLQQQLDKLTKDDSTVPELLLCYNRANRQVAI 564
Query: 806 ICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLA 865
+CNHQR V K+H M L KI +AKK + K+ K + A
Sbjct: 565 LCNHQRAVPKSHEKSMENLKAKI---------------KAKKTELKEAKEELEKAHADAA 609
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
+ +++ + ++ K++ K++ K +AL TSK+NYLDPRI+VAWCK+++VPIEKI
Sbjct: 610 KQRASKRVDRVKEQLRKLKIQRTDKDENKQIALSTSKLNYLDPRISVAWCKKYQVPIEKI 669
Query: 926 FNKSLLAKFAWAMDVDPE 943
FNK+ KF WA+D+ E
Sbjct: 670 FNKTQREKFRWAIDMADE 687
>gi|241956336|ref|XP_002420888.1| DNA topoisomerase, putative [Candida dubliniensis CD36]
gi|223644231|emb|CAX41041.1| DNA topoisomerase, putative [Candida dubliniensis CD36]
Length = 777
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 277/625 (44%), Positives = 371/625 (59%), Gaps = 82/625 (13%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL HNGVIFPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ + P F+
Sbjct: 155 KWQTLEHNGVIFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAKNPVFQ 214
Query: 460 ENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
+NF+ND+ ++L G I++ E DF +Y ++ +E+KK MS EEKK +KEEK K
Sbjct: 215 KNFFNDFLEVLKECGGCGVEIKDFEKLDFSKMYAHFEKLREEKKAMSKEEKKRIKEEKEK 274
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+EE + ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+ KD IP
Sbjct: 275 EEEPFKTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVAPEQVTLNLSKDAKIP 334
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
E P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E ARKL+
Sbjct: 335 EPP-AGHQWGEIRHDNEVTWLAMWKENIS-DSLKYVRFANNSSVKGQSDFKKFETARKLR 392
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
+Y+ IR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L+ +V
Sbjct: 393 NYVDDIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHV 452
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAH 754
PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ + +N
Sbjct: 453 TLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQ 512
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNHQRTVS
Sbjct: 513 LQYYMKGLTAKVFRTYNASKTMQDQIDLIENEGTVAEKVVKFNAANRTVAILCNHQRTVS 572
Query: 815 KTHSAQMSRLT--------------------------------EKIEDL----------- 831
KTH + R+ E+IEDL
Sbjct: 573 KTHGDSIQRINDKLKEFMWQKIRLKKMILQLEPKLKKKDPKYFEEIEDLIKEDIEHIHHT 632
Query: 832 ------KGVLKDLRVDLDRAKKGKPPLMKDSDGKRK-----------------------R 862
+ V K L D ++ K PL+ +SD K K +
Sbjct: 633 IIKRQREQVKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDELEKEYKKELKTGKPIITK 692
Query: 863 NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
N E L++++ +I + +K KED V+LGTSK+NY+DPR+TV + K+ +VPI
Sbjct: 693 NATVEKLKQQIETLENRILNVSFQLKDKEDNSEVSLGTSKMNYIDPRLTVMFSKKFDVPI 752
Query: 923 EKIFNKSLLAKFAWAMD-VDPEFRF 946
EK+F K+L KF WA++ D +RF
Sbjct: 753 EKLFTKTLREKFNWAIESTDENWRF 777
>gi|119596403|gb|EAW75997.1| topoisomerase (DNA) I, isoform CRA_c [Homo sapiens]
Length = 715
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/557 (47%), Positives = 336/557 (60%), Gaps = 69/557 (12%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 276 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 335
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 394
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 395 PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 514 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R P+ E
Sbjct: 634 RA----------------------------------------------------PPKTFE 641
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ M K+E D +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+
Sbjct: 642 KSMMNLQTKLEVQATD---REENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQ 698
Query: 931 LAKFAWAMDV-DPEFRF 946
KFAWA+D+ D ++ F
Sbjct: 699 REKFAWAIDMADEDYEF 715
>gi|407929552|gb|EKG22369.1| DNA topoisomerase I [Macrophomina phaseolina MS6]
Length = 854
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 294/696 (42%), Positives = 405/696 (58%), Gaps = 64/696 (9%)
Query: 186 DGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPL 245
+G K + +DDKPLS R K S N A+ A A+ SE++ ++PL
Sbjct: 23 NGKSYKEASSSDDDDKPLSKRRKTASPN------ATSASASDSELS----------DLPL 66
Query: 246 SS---RFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASS 302
+ + PK A G + SD +PL +K+ +T +K + +AS
Sbjct: 67 ARTARKPPKVKASDLG---MSSDSDEPLGAKLASEKKKIEQTAEKEAKAI------RASE 117
Query: 303 SGASSAKKPKVSDT--------SKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKK 354
A +KPK ++ SK+ K KK + DD +P+S++ AP +K
Sbjct: 118 KKAPIKRKPKKEESESDDDIPLSKKKKPVAKKTNGVKKEESDDDVPLSKK----APVARK 173
Query: 355 SVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVI 412
+ + + ++T + + K P GD KW TL HNGV+
Sbjct: 174 GKAKAEEPPRKGAKGKGAAKQETVEDEEAEAEEDEYKWWEDPSKGDDTIKWHTLEHNGVV 233
Query: 413 FPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKL 469
FPP Y LP VKM Y G V L + EEVAT F ML++ + ++ P F++NF++D++++
Sbjct: 234 FPPEYEPLPGNVKMKYDGVPVTLHKDAEEVATFFGSMLNSTHNVENPTFQKNFFHDFKEV 293
Query: 470 L----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
L GK I+ + CDF+ IY + Q+E KK + + EKKALK K++ E
Sbjct: 294 LDKTGHATGPDGKKIKIEKFDKCDFRDIYAHFEAQREAKKALPAAEKKALKAAKDEAEAP 353
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPI 579
YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+KKR+ P ITINIGKD +P P
Sbjct: 354 YMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGKVKKRVMPEQITINIGKDAKVP-SPP 412
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
PG WKEVKHD T TWLA W + IN +KYV LAA+S +KGQSD +K+EKAR+LK +I
Sbjct: 413 PGHKWKEVKHDQTGTWLAMWQENINGA-YKYVMLAANSDIKGQSDFKKFEKARELKKHID 471
Query: 640 SIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP 699
IR YT+D S RQ A A YLIDK ALRAGNEK +DEADTVGCC+LK +V P
Sbjct: 472 RIRKDYTRDLKSEVMADRQRATAVYLIDKFALRAGNEKGEDEADTVGCCSLKYEHVTLKP 531
Query: 700 PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKEL 758
PNK+ FDFLGKDSI++ + VEV+ V+K + F+ KK D++FD+L T+ LN +L
Sbjct: 532 PNKVVFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSGLNKYLSNY 591
Query: 759 MPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHS 818
M GLTAKVFRTYNAS T+ +L + G +A K+ Y AN++VAI+CNH+RTV+ +H+
Sbjct: 592 MTGLTAKVFRTYNASYTMAQLLKQMKSTGTIAEKVKDYNEANRKVAILCNHKRTVAASHT 651
Query: 819 AQMSRLTEKIEDLK---GVLKDLRVDLD---RAKKG 848
Q+ ++ EKI L+ +K + +DLD + KKG
Sbjct: 652 TQIEKMQEKINGLRYQQWRVKQMMLDLDPKIKKKKG 687
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+ ++ E LE K+ Q +IE M+ K++ K VALGTSKINY+DPR+TV + K+ VP
Sbjct: 769 KGVSIEKLESKVEQLQQRIETATIQMEDKDNNKEVALGTSKINYIDPRLTVVFSKKFNVP 828
Query: 922 IEKIFNKSLLAKFAWAM 938
IE+ F+K+L KF WA+
Sbjct: 829 IERFFSKTLREKFDWAI 845
>gi|297300214|ref|XP_002805556.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Macaca mulatta]
Length = 574
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 253/545 (46%), Positives = 336/545 (61%), Gaps = 36/545 (6%)
Query: 415 PPYLPHGVK---MLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG 471
PP+ P K + GK + L+ + EEVAT + MLD +Y K FR+NF+NDWRK +
Sbjct: 53 PPHQPCLGKSPPFFWPGKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMT 112
Query: 472 --KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVK 529
+ VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE K ++++ + I+DG +
Sbjct: 113 VEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHR 172
Query: 530 EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKH 589
EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IP+ P G WKEV+
Sbjct: 173 EKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPK-PPAGHQWKEVRS 231
Query: 590 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDF 649
DNTV WLA W + I KYV L S LKG+ +K+E AR+L+ ++ IR+ Y D+
Sbjct: 232 DNTVMWLAAWTESIQ-NSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADW 290
Query: 650 VSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIPP-----NKL 703
S++ RQ AVA Y IDKLALRAGNEKDD E ADTVGCC+L+V +V+ P + +
Sbjct: 291 KSQEMKTRQRAVALYFIDKLALRAGNEKDDGEAADTVGCCSLRVEHVQLHPEADGCQHVV 350
Query: 704 KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLT 763
+FDFLGKDSI+Y N V VE PVYK + F K DDLFD+L T LN HL ELM GLT
Sbjct: 351 EFDFLGKDSIRYYNRVPVEKPVYKNLQLFMKNKDPQDDLFDRLTTTSLNKHLHELMDGLT 410
Query: 764 AKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS 822
AKVFRTYNAS+TL L T + +A KI Y RAN+ VAI+CNHQR S T M
Sbjct: 411 AKVFRTYNASVTLQEQLRALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQ 470
Query: 823 RLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
L KI+ K + + R +L +K + DGK +R E E +
Sbjct: 471 NLQTKIQVKKEQVAEARAEL---RKARAEHKAQGDGKSRRVGHTEPWEEETLAAE----- 522
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 942
VAL TSK+NYLDPRI++AWCKR VP+EKI++K+ +FAWA+ +
Sbjct: 523 -------------VALSTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQRERFAWALAMAG 569
Query: 943 E-FRF 946
E F F
Sbjct: 570 EDFEF 574
>gi|47211672|emb|CAF91446.1| unnamed protein product [Tetraodon nigroviridis]
Length = 783
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/589 (45%), Positives = 352/589 (59%), Gaps = 51/589 (8%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L EEVAT FA MLD +Y K FR
Sbjct: 202 KWRFLGHKGPVFAPPYEPLPDKVKFYYDGKPMKLGAPAEEVATFFAKMLDHEYTTKDVFR 261
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L C+F + ++ + Q E +KQMS EEK+ +KEE +
Sbjct: 262 KNFFKDWRKEMTSEEKSKITDLNKCNFTEMNEYFKAQSEARKQMSKEEKQKIKEENERIL 321
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++GNFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD P+
Sbjct: 322 QEYGFCIMDNHKERIGNFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKHPK- 380
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWLA W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 381 PPPGTKWKEVRHDNKVTWLASWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 439
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 440 VDRIRTQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 499
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD---- 747
P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+L+
Sbjct: 500 LYPKLDDQEFVVEFDFLGKDSIRYYNKIPVEKRVFKNLQLFLENKQPGDDLFDRLNVRIS 559
Query: 748 ----------------------------TAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
T+ LN HL+ELM GLTAKVFRTYNASITL
Sbjct: 560 ECRPVKIRCASAGAVSGCCTRPFFSLPQTSILNKHLQELMDGLTAKVFRTYNASITLQQQ 619
Query: 780 LNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L + D + KI Y RAN+ VAI+CNHQR KT M L KI++ + L
Sbjct: 620 LKELSCSDDSLPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDEKQKQLSAA 679
Query: 839 RVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
R L AK D K A E + + + ++ K++ +E+ K +AL
Sbjct: 680 RKQLKGAKAEHKASHDDKSKK-----AVEVKRKAVQRIEEQLMKLQVQATDREENKQIAL 734
Query: 899 GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
GTSK+NYLDPRI+VAWCK+ +PIEKI+NK+ KFAWA+D+ + +F F
Sbjct: 735 GTSKLNYLDPRISVAWCKKFGIPIEKIYNKTQREKFAWAIDMAEKDFEF 783
>gi|340924245|gb|EGS19148.1| topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 896
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/625 (44%), Positives = 369/625 (59%), Gaps = 96/625 (15%)
Query: 407 VHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFW 463
+HNGV+FPPPY LP VK+ Y GK VNL E EEVAT F ML T +++ P F++NF+
Sbjct: 266 LHNGVLFPPPYEPLPSHVKLYYDGKPVNLHVEAEEVATFFGSMLHATQHVENPVFQKNFF 325
Query: 464 NDWRKLLGKNHVIQNLEG----------CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
D++++L K ++++G DF IY+ + E KK + EKKA KE K
Sbjct: 326 TDFKEVLDKTGGAKDMDGNPVDIKEFKKLDFTKIYEHFRSISEAKKNRPAAEKKAEKEAK 385
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K E YM+ DG KEKVGNFRVEPPGLFRGRGEHPK GK+KKR+ P ITINIGKD
Sbjct: 386 AKLEAPYMYCKWDGRKEKVGNFRVEPPGLFRGRGEHPKTGKVKKRVMPEQITINIGKDAK 445
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+P+ P PG WK V+HDN TWLA W + +N +KYV LAA+SS+KGQSD +K+EKAR+
Sbjct: 446 VPDPP-PGHKWKAVQHDNKATWLAMWQENVN-GNYKYVMLAANSSIKGQSDFKKFEKARE 503
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKV 692
LK +I IRA YT+D S RQ A A YLIDK ALRAGNEKD ++EA+TVGCC+LK
Sbjct: 504 LKKHIDRIRADYTRDLKSEVMAERQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKY 563
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKL 751
+V PN + FDFLGKDSI++ N +V+ V+K + F+ K+ DD+FD+L T +L
Sbjct: 564 EHVTLKEPNTVIFDFLGKDSIRFYNEFQVDRQVFKNLKMFKKPPKEPGDDIFDRLTTTQL 623
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQ 810
N HL MPGLTAKVFRTYNAS T+ +L DG +A K+ +Y N+EVAI+CNH+
Sbjct: 624 NKHLSSYMPGLTAKVFRTYNASYTMSRLLKGLKADGLSMAEKVKLYNDCNREVAILCNHK 683
Query: 811 RTVSKTHSAQMSRLTEKIEDL--------------------------------------- 831
RTV +H AQM +L ++I+ L
Sbjct: 684 RTVGASHEAQMEKLGDRIKGLKYQKWRTKMMMLEVDPKLKKKKGAEYFEREADLTDEWIQ 743
Query: 832 ---KGVLKDLRVDLDR---------AKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNA- 878
K ++++LR + + A G+ PL D D K + E LE K + N
Sbjct: 744 NHQKFLVEELRTKIQKKFEKDNEKLAADGEKPLT-DKDLKERMKAVSE-LEAKFKKENKT 801
Query: 879 ----------KIEKMERDM-KTKEDLKTVAL-------------GTSKINYLDPRITVAW 914
+EK+E + K E +KT+ L GTSKINY+DPR+TV +
Sbjct: 802 GKVEPEGKNPTVEKLEAAIVKLDERIKTLELQSADREGNKEVALGTSKINYIDPRLTVVF 861
Query: 915 CKRHEVPIEKIFNKSLLAKFAWAMD 939
+ +VPIEK F+K+L KF WA++
Sbjct: 862 SNKFKVPIEKFFSKTLREKFRWAIE 886
>gi|121703081|ref|XP_001269805.1| topoisomerase I [Aspergillus clavatus NRRL 1]
gi|119397948|gb|EAW08379.1| topoisomerase I [Aspergillus clavatus NRRL 1]
Length = 886
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 274/643 (42%), Positives = 377/643 (58%), Gaps = 41/643 (6%)
Query: 219 GASKADAAISEVNVKTDPEDSDDE-VPLSSRFPKSNAGTSGAKPIDSDEKKPLA---SKV 274
G K ++ + +PE S++E PLS R P ++DE PLA K+
Sbjct: 67 GKRKVRTSVGQRKSYAEPESSEEEDQPLSKR---RRTSVKHEDP-ETDEDVPLALNGRKL 122
Query: 275 QQNGSTSRETQQKSSSVPVKRPL--------QKASSSGASSAKKPKVSDTSKEVKVKQVT 326
+ T ++ S VP++R L QKA + K T K+
Sbjct: 123 PKASETRIGAEESDSDVPIERKLASEKLRIQQKAEKEAKVARKSEAAQATKTTAAAKRKQ 182
Query: 327 VKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQY 386
V KK D+ P+++ K S P+ T TA + ++ + + + K+ + ++ +
Sbjct: 183 VNGVKKEPVDEKKPVAK--KASRPTK----TETAASARNGKAKATPVKKEESEEVEEGEE 236
Query: 387 SKSTKML---PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVA 441
+ P GDG KWTTL HNGV+FPPPY LP VKM Y G V L PE EEVA
Sbjct: 237 EEEEYRWWDDPTKGDGTIKWTTLEHNGVVFPPPYEPLPQDVKMKYDGIPVTLHPEAEEVA 296
Query: 442 TMFAVMLD-TDYMQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDW 490
F ML+ T +++ P F++NF++D++ +L G I+ CDF+ I+ +
Sbjct: 297 GFFGSMLNATQHVENPTFQKNFFSDFKDILKKTGGAKDPKGNKIEIKEFSKCDFQSIFAY 356
Query: 491 HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 550
+ ++ +K+ + EKK LK EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHP
Sbjct: 357 YDAKRIEKRNIPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKVGNFRVEPPSLFRGRGEHP 416
Query: 551 KMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKY 610
K G++K R+QP ITINIGK P+P P G WKEVKHD TWLA W + IN +KY
Sbjct: 417 KTGRVKARVQPEQITINIGKGAPVPPPP-EGHRWKEVKHDQEGTWLAMWQENIN-GNYKY 474
Query: 611 VFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLA 670
V LAA+S +KGQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ A
Sbjct: 475 VMLAANSDVKGQSDFKKFEKARELKKHIDRIRKDYQKSLKHELMVERQKATAVYLIDQFA 534
Query: 671 LRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIG 730
LRAGNEK +DEADTVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K +
Sbjct: 535 LRAGNEKGEDEADTVGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDAQVFKNLK 594
Query: 731 QFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV 789
F+ KK+ D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L G+
Sbjct: 595 IFKKAPKKEGDEIFDRLTTSALNKHLSTYMQGLTAKVFRTYNASYTMATLLKDMKATGNN 654
Query: 790 AVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
A K+ Y AN+ VAI+CNH+RTV+ +H+ QM +++E+I+ L+
Sbjct: 655 AEKVKAYNDANRRVAILCNHKRTVTASHANQMEKMSERIKGLR 697
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
+E + + +IE ME + KED K VALGTSKINY+DPR+TV + K+ VPIEK F+K
Sbjct: 808 IEAAITKLEQRIETMELQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFFSK 867
Query: 929 SLLAKFAWAM-DVDPEFRF 946
SL KF WA+ VD + F
Sbjct: 868 SLREKFEWAIKSVDENWEF 886
>gi|378733270|gb|EHY59729.1| DNA topoisomerase I [Exophiala dermatitidis NIH/UT8656]
Length = 902
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 285/656 (43%), Positives = 393/656 (59%), Gaps = 72/656 (10%)
Query: 237 EDSDDEVPLSSRFPKSNAGTSGAKPIDSD-EKKPLASKVQQNGST---------SRETQQ 286
E SDD+VPLS + + A P DSD + PL SK + NG T S+ +
Sbjct: 95 ESSDDDVPLSKKRKTTTA------PADSDSDDAPLISKAKTNGKTVTNPPRVKASQIGES 148
Query: 287 KSSSVPV-------KRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKV---EKKADDD 336
S VP+ K+ ++KA+ A +K + + K K K E+ +DDD
Sbjct: 149 SDSDVPLGKKLAKQKQNIEKAAEKEAKQIRKDEKKEADKSKAKKAAPAKKVKKEESSDDD 208
Query: 337 DHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML--- 393
P+++R AP A A++ V + S+ KKT K IK + +
Sbjct: 209 K--PLAKR----AP---------ATASRRVKTESSTPVKKTSKSIKKEETADPEDEEDDD 253
Query: 394 --------PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATM 443
P GDG KW TL HNGV+FPPPY LP VKM Y G ++L P+ EEVA
Sbjct: 254 DEVKWWEDPTKGDGTNKWETLEHNGVVFPPPYQPLPEHVKMKYDGVPISLHPDAEEVAGF 313
Query: 444 FAVMLDTDY-MQKPKFRENFWNDWRKLL-----------GKNHVIQNLEGCDFKPIYDWH 491
F ML++ + ++ P F++NF+ND++++L GK I+ CDF+PI++ +
Sbjct: 314 FGSMLNSTHNVENPTFQKNFFNDFKEILEKTGGATDAKTGKKIEIKEFAKCDFRPIFEHY 373
Query: 492 QEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK 551
+ ++ KK + + EKKALK K++ E YM+ I DG K+KVGNFRVEPPGLFRGRGEHPK
Sbjct: 374 EAERAAKKALPAAEKKALKAAKDEAEAPYMYCIWDGKKQKVGNFRVEPPGLFRGRGEHPK 433
Query: 552 MGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYV 611
GK+K R+ P +T+NIGK+ +P P G WKE+KHD TWLA W + IN +KYV
Sbjct: 434 TGKVKTRVMPEQVTLNIGKEAKVPPPP-EGHKWKEIKHDKQGTWLAMWQENIN-GNYKYV 491
Query: 612 FLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLAL 671
LAA+S +KGQSD +K+EKAR+LK +I IR Y KD S RQ A A YLID+ AL
Sbjct: 492 MLAANSDIKGQSDYKKFEKARELKKHIDRIRQDYRKDLKSELMADRQKATAMYLIDQFAL 551
Query: 672 RAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
RAGNEK +DEADTVGCC+LK ++ PN + FDFLGKDSI++ EV+ V+K +
Sbjct: 552 RAGNEKGEDEADTVGCCSLKYEHITLRAPNTVIFDFLGKDSIRFHEEFEVDPQVFKNLKI 611
Query: 732 FQT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVA 790
F+ KK+ DD+FD+L T +LN HLK MPGLTAKVFRTYNAS T+ +L++ +G VA
Sbjct: 612 FKKPPKKEGDDIFDRLTTTQLNNHLKNYMPGLTAKVFRTYNASYTMSKLLSEMRSEGSVA 671
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVLKDLRVDLD 843
K+ + AN++VAI+CNH+RTV+ TH+ QM ++ +++ LK LK + +D+D
Sbjct: 672 EKVKDFNDANRKVAILCNHKRTVAATHTNQMEKIGNRLKGLKYQQWRLKQMMLDID 727
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +A+I M + KE+ K VALGTSKINY+DPR+TV +CK+ VPIEK+F
Sbjct: 822 EKLEENIKKFDARIATMSVQAEDKENNKEVALGTSKINYIDPRLTVVFCKKFNVPIEKLF 881
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 882 SKTLREKFEWAIKSVDENWTF 902
>gi|340520224|gb|EGR50461.1| predicted protein [Trichoderma reesei QM6a]
Length = 914
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 294/709 (41%), Positives = 401/709 (56%), Gaps = 75/709 (10%)
Query: 187 GNGLKSDDNDSEDD-KPLSARLKGNS----------KNVNQGIGASKADAAISEVNVKTD 235
G+ +KS +SE D +PL+ R + N K +Q + S + A+
Sbjct: 83 GSLMKSYKEESESDGEPLAKRQRSNQDSDSDDEPMVKARSQKLPPSYKETAL-------- 134
Query: 236 PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKR 295
PE SDDE PL + K A + K + R + K+ P KR
Sbjct: 135 PESSDDEQPLGVKLAKKKAD--------------IEKKADKEAKAIRAKEAKAKPAP-KR 179
Query: 296 PLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKS 355
++ S A K + S+ + K K VK K + D PIS++ +S
Sbjct: 180 AVKDESDDDLPIAAKKRQSNGT-AAKRKSTGVK---KDESDSDAPISKK--------SRS 227
Query: 356 VTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPP 415
V+ +AK K+ + K K + + + P D KWTTL HNGV+F P
Sbjct: 228 VSASAKGKKATPAKDTKKAKSKEPSEEADEEEFEWWNAPKKEDDSIKWTTLEHNGVLFAP 287
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML---DTDYMQKPKFRENFWNDWRKLL 470
Y LP VKM Y G+ V L PE EEVAT + M+ + +++ P FR+NF+ D+ + +
Sbjct: 288 EYEPLPKNVKMYYDGQPVTLAPEAEEVATFWVAMMTPASSHHLENPTFRKNFFADFSEYI 347
Query: 471 GK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKY 520
K N V I++L+ CDF I+++ + E KK M+ EEK ALK EK+K E Y
Sbjct: 348 KKSGGAKDAKGNKVDIKSLDKCDFSKIHEYWTAKIEAKKNMTKEEKAALKAEKDKLEAPY 407
Query: 521 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIP 580
++ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+ P ITINIGK+ +PE P
Sbjct: 408 LYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGKVKARVMPEQITINIGKEAKVPEPPA- 466
Query: 581 GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHS 640
G WK V+HD TWLA W + IN +KYV L A+S +KGQSD +K+EKAR+LK +I
Sbjct: 467 GHKWKAVQHDQKATWLAMWQENING-AYKYVMLGAASDVKGQSDFKKFEKARELKKHIDK 525
Query: 641 IRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIP 699
IR YTKD S RQ A A YLIDKLALRAGNEKD ++EADTVGCC+LK ++ P
Sbjct: 526 IRRDYTKDLKSEVMADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHISLQP 585
Query: 700 PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKEL 758
P+++ FDFLGKDSI+Y T V+ V+K + F+ K + DDLFD+L+T++LN HL
Sbjct: 586 PDQVTFDFLGKDSIRYNETARVDPQVFKNLKLFKKAPKTDGDDLFDRLNTSQLNKHLNSY 645
Query: 759 MPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVS 814
MPGLTAKVFRTYNAS T+ +L + D G +A ++ +Y N++VAI+CNH+RTV
Sbjct: 646 MPGLTAKVFRTYNASYTMSELLKELGKDPRSRGTIAERVKLYNDCNRKVAILCNHKRTVG 705
Query: 815 KTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLMKDSD 857
+H QM +L ++I+ L K K + +DLD + KKG KD D
Sbjct: 706 ASHEQQMQKLGDRIKGLRYQKWRTKKMILDLDPTQKKKKGAAWFEKDED 754
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R + E L + + + +I +E + ++ K VAL TSKINY+DPR+TV + K+ +VP
Sbjct: 827 RGVTVEKLLASIDKIDERIRILETQAEDRDGNKEVALSTSKINYIDPRLTVVFSKKFDVP 886
Query: 922 IEKIFNKSLLAKFAWAM 938
IEK F+K+L KF WA+
Sbjct: 887 IEKFFSKTLRDKFRWAI 903
>gi|366992774|ref|XP_003676152.1| hypothetical protein NCAS_0D02090 [Naumovozyma castellii CBS 4309]
gi|342302018|emb|CCC69790.1| hypothetical protein NCAS_0D02090 [Naumovozyma castellii CBS 4309]
Length = 753
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/632 (43%), Positives = 377/632 (59%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGV+ PPPY LP +K+ Y GK V+L PE EEVA + ML+TD+ +
Sbjct: 124 DDSIKWTTLKHNGVVIPPPYEPLPSHIKLYYDGKPVDLPPEAEEVAGFYGAMLETDHAKN 183
Query: 456 PKFRENFWNDWRKLL-----GKNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ D+ ++L KN + I+ E CDF ++D+ + KE+KK+++S+EKK +
Sbjct: 184 PVFQKNFFQDFLEVLKTAGGTKNGITIEKFEKCDFTKMFDYFELLKEEKKKLTSQEKKQI 243
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ ++ K EEKY + +DG KE+VGNF+VEPPGLFRGRG HPK GKLK+R+QP DI +N+
Sbjct: 244 RLDREKAEEKYKFCELDGRKEQVGNFKVEPPGLFRGRGAHPKTGKLKRRVQPEDIILNLD 303
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PIPE P G W E+++DN+V WLA W + I KYV LAA+SSLKGQSD +K+E
Sbjct: 304 KDAPIPEAP-EGHHWGEIRNDNSVQWLAMWRENIF-NSVKYVRLAANSSLKGQSDYKKFE 361
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LKD+I +IR Y K S RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 362 KARQLKDHIDAIRKDYKKQLKSEVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 421
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 422 LRYEHVTLKPPNTVVFDFLGKDSIRFYQEVEVDKKVFKNLKIFKRPPKQPGHQLFDRLDP 481
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGL+AKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+CN
Sbjct: 482 STLNKHLQNYMPGLSAKVFRTYNASKTMQDQLDLIPNEGSVAEKLLRYNAANRTVAILCN 541
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPP--------LMKDSD 857
HQRTV+K H+ + + +KI++L K LK + L+ + K P + K+ +
Sbjct: 542 HQRTVTKGHAQSVQKANDKIKELEWQKIRLKKALLQLEPERLKKNPAYFEEIEDMTKEDE 601
Query: 858 GKRKRNLAPEALE---RKMAQTN--AKIEKME----------------------RDMKT- 889
+ R + +E +K A+ N K EK E ++KT
Sbjct: 602 AEIHRRIIEREIEKYHKKFARENDKRKFEKEELLPESQLKEWLDGVDELKKQYKEELKTG 661
Query: 890 ----KEDLKTVALGTSKINYLDPRI------------------------------TVAWC 915
K + TV +I LD RI TV +C
Sbjct: 662 VVELKPTMNTVEKIEKQIERLDNRIQTNSIQLKDKEENSQVSLGTSKINYIDPRLTVVFC 721
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 722 KKYDVPIEKIFTKTLREKFKWAIESVDENWRF 753
>gi|389740120|gb|EIM81312.1| hypothetical protein STEHIDRAFT_67037 [Stereum hirsutum FP-91666
SS1]
Length = 794
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 237/444 (53%), Positives = 307/444 (69%), Gaps = 9/444 (2%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
+GDG +KWTTL H+GV+FPPPY LP VKM Y GK V+L P EEVA + M++TD+
Sbjct: 168 NGDGTQKWTTLEHSGVLFPPPYEPLPKDVKMKYNGKPVDLPPASEEVAGFYGAMIETDHA 227
Query: 454 QKPKFRENFWNDWRKLLGKN-----HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
+ F +NF+ DW K+L KN I + E CDF+P++++ + +K KKK ++S EKK
Sbjct: 228 KDATFNKNFFQDWLKVLKKNPPRDGTKITDFERCDFRPMFEFFEAEKAKKKALTSAEKKE 287
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
LK++K++ E KY ++DG KEKVGNFRVEPPGLFRGRG+HP+ G LK R+ P DIT+NI
Sbjct: 288 LKKQKDEAEGKYTTCLLDGRKEKVGNFRVEPPGLFRGRGDHPRKGALKLRVGPEDITLNI 347
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
G + IP +PG+ WK V HDNTVTWLA W + +N KYVFLAA SSLKGQSD K+
Sbjct: 348 GANATIPTPNVPGK-WKTVIHDNTVTWLATWVENVNGNH-KYVFLAAGSSLKGQSDMMKF 405
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EKAR+LK++I IR Y +D ++ RQ A A Y ID LALRAGNEK +DEADTVGCC
Sbjct: 406 EKARELKNHIDRIRQDYNEDMKNKVMALRQRATAVYFIDILALRAGNEKGEDEADTVGCC 465
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+L+ +V PPN + FDFLGKDSI+Y N V VE V+K I F+ GKK +DDLFD+++
Sbjct: 466 SLRCEHVTLEPPNYVAFDFLGKDSIRYYNRVTVEQQVFKNIRIFKDGKKDDDDLFDRVNV 525
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL+ M GL+AKVFRTYNASIT L+ G + K++ Y AN+ VAI+CN
Sbjct: 526 RLLNKHLQSYMKGLSAKVFRTYNASITFQKQLDDTPAKGTLQEKLNHYNHANRMVAILCN 585
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLK 832
HQR KTH M ++ +K+ +K
Sbjct: 586 HQRAAPKTHEQSMGKMKDKLRGMK 609
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 60/80 (75%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E +E +++ + +++ + M +E K VAL TSKINYLDPRIT AWCK+H+VPIEKIF
Sbjct: 715 EKIEEMISKLDERMKTFKLQMLDREAGKEVALTTSKINYLDPRITAAWCKKHDVPIEKIF 774
Query: 927 NKSLLAKFAWAMDVDPEFRF 946
+K+LL KF WAM+ D +++F
Sbjct: 775 SKTLLTKFPWAMEADDDWQF 794
>gi|451849741|gb|EMD63044.1| hypothetical protein COCSADRAFT_336991 [Cochliobolus sativus
ND90Pr]
Length = 903
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 292/692 (42%), Positives = 397/692 (57%), Gaps = 58/692 (8%)
Query: 219 GASKADAAISEVNVKTDPEDS-DDEVPLSSRFPKSNAGTSGAKPI--DSDEKK---PLAS 272
G KA +++ D +S DD+ PLS R S AKP+ DSD + PL +
Sbjct: 70 GKRKARTSVANGKSYKDASNSEDDDKPLSKRRRTSQQ----AKPVKDDSDSELSDVPLKA 125
Query: 273 KVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKK 332
+V S + + S VP+ L K S +A K + +KE + K E
Sbjct: 126 RVLPKASAEQIGESADSDVPLATKLTKKKESIEKAAAKEAKAIRNKEKAPPKRKQKAE-- 183
Query: 333 ADDDDHIPIS--------------QRMKNSAPSVKKSVTNTAKATKSVSSSS---NKINK 375
+D +D IP++ + + AP KKS KA + + + K+ K
Sbjct: 184 SDSEDDIPLAKKKAPAKKANGVKKEESDSDAPLAKKSAPKNTKAKAAAVAPAKATGKVKK 243
Query: 376 KTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEV 431
T++ + + PG DG +KW TL H+GV+FPP Y LP VK++Y G V
Sbjct: 244 GTEEDQEAEDEEDEYRWWEDPGKSDGTRKWETLEHSGVVFPPEYEPLPKHVKLVYDGVPV 303
Query: 432 NLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLLGK---------NHV-IQNLE 480
L + EEVAT + ML++ + ++ P F +NF+ D+ +L K N V I+ E
Sbjct: 304 TLHKDAEEVATFYGSMLNSTHNVENPTFNKNFFEDFTAILDKTGHGKDKNGNTVKIKKFE 363
Query: 481 GCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPP 540
CDFKPI++W ++ KKK +S+ EKKALK E+ E YM+ + DG K+KVGNFRVEPP
Sbjct: 364 KCDFKPIFEWFDSERAKKKALSAAEKKALKAEREAAEAPYMYCMWDGRKQKVGNFRVEPP 423
Query: 541 GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWN 600
GLFRGRGEHPK G++KKR+ P ITINIG+ +PE P G WKEVKHD+ TWLA W
Sbjct: 424 GLFRGRGEHPKTGRVKKRVMPEQITINIGEKAKVPEPP-AGHRWKEVKHDHEGTWLAMWQ 482
Query: 601 DPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIA 660
+ IN +KYV LAA+S +KGQSD +K+EKAR+LK +I IR Y KD S+ RQ A
Sbjct: 483 ENINGA-YKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQRA 541
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
A YLID+ ALRAGNEK +DEADTVGCC+LK ++ PP + FDFLGKDSI++ + V+
Sbjct: 542 TAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLRPPETVIFDFLGKDSIRFYDEVK 601
Query: 721 VELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
V+ V+K + F+ K DD+FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +
Sbjct: 602 VDPQVFKNLKLFKKEPKTTGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNASYTMARL 661
Query: 780 LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR 839
L + G + K+ Y AN+EVAI+CNH+RTV+ H+ + ++TEKI LR
Sbjct: 662 LKEMKPTGTIQEKVKAYNDANREVAILCNHKRTVAANHANSIEKMTEKI-------NGLR 714
Query: 840 VDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+ R K +M D D K K+ E ER
Sbjct: 715 YQVWRTKM----MMIDVDPKIKKKKGAEFFER 742
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +IE M+ M+ KE K VALGTSKINY+DPR+TV + K+ +VPIE+ F
Sbjct: 823 EKLEGNIDKLHQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTVVFSKKFDVPIERFF 882
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 883 SKTLREKFDWAIKSVDENWEF 903
>gi|189203219|ref|XP_001937945.1| DNA topoisomerase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985044|gb|EDU50532.1| DNA topoisomerase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 905
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/518 (47%), Positives = 333/518 (64%), Gaps = 33/518 (6%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
PG DG KKW TL H GV+FPP Y LP VK++Y G V L + EEVAT + ML++
Sbjct: 266 PGKNDGTKKWDTLEHAGVVFPPEYEPLPKHVKLVYDGVPVTLHKDAEEVATFYGSMLNST 325
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F +NF+ D+ +L G I+ E CDFKPI++W ++ KKK
Sbjct: 326 HNVENPTFNKNFFEDFTAILDKTGHGKDKNGNTIKIKKFEKCDFKPIFEWFDAERAKKKA 385
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+S+ EKKALK EK E YM+ + DG K+KVGNFRVEPPGLFRGRGEHPK G++KKR+
Sbjct: 386 LSAAEKKALKAEKEAAEADYMYCLWDGRKQKVGNFRVEPPGLFRGRGEHPKTGRVKKRVM 445
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIG++ +PE P G WKE+KHD+ TWLA W + IN +KYV LAA+S +K
Sbjct: 446 PEQITINIGENAKVPEPP-AGHRWKEIKHDHEGTWLAMWQENINGA-YKYVMLAANSDIK 503
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y KD S+ RQ A A YLID+ ALRAGNEK +D
Sbjct: 504 GQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQRATAIYLIDQFALRAGNEKGED 563
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+LK ++ PP + FDFLGKDSI++ + V+V+ V+K + F+ K
Sbjct: 564 EADTVGCCSLKFQHITLRPPETVIFDFLGKDSIRFYDEVKVDPQVFKNLKLFKKEPKTTG 623
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
DD+FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L + G V K+ Y A
Sbjct: 624 DDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNASYTMARLLKEMKATGTVQEKVKAYNDA 683
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVLKDLRVDLD---RAKKG----- 848
N+EVAI+CNH+RTV+ +H+ + ++ E+I L+ K + +D+D + KKG
Sbjct: 684 NREVAILCNHKRTVAASHATSIEKMNERINGLRYQAWRTKMMMIDVDPKIKKKKGAEYFE 743
Query: 849 KPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
+P + D K+ ++ E + +K+ I+K E+D
Sbjct: 744 RPEDLDDEWVKQHQDAEVEEMRQKI------IKKFEKD 775
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE M+ M+ KE K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 825 EKLEANVEKIVQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTVVFSKKFGVPIEKFF 884
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 885 SKTLREKFDWAIKSVDENWEF 905
>gi|2642493|gb|AAC14193.1| DNA topoisomerase I [Physarum polycephalum]
Length = 1015
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 286/616 (46%), Positives = 377/616 (61%), Gaps = 75/616 (12%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
DG K+WT+LVHNGV+F PY+ HGVK Y GK +NL+PE EEVAT +A L+TDY +K
Sbjct: 408 DG-KRWTSLVHNGVVFVEPYVAHGVKFYYDGKPINLSPEAEEVATFYAKYLETDYPKKEN 466
Query: 458 FRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
F NFW+D+R L + VI++ DF I+ + EQKE K ++EEKKA K EK K
Sbjct: 467 FNTNFWSDFRTYLTPEQKKVIKDFSKADFTHIHKYLVEQKELKANRTAEEKKAEKAEKEK 526
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+KY +A+++G ++++ N+ +E PGLF GRG HPK G +KKRI+ DITINIGK VP+P
Sbjct: 527 LLQKYGFAMINGHRQRISNWAIERPGLFLGRGAHPKTGLVKKRIEAEDITINIGKGVPVP 586
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
E P G W +V HD+ V WLA W + IN FKYV+L ASS++KG+SD +K+E ARKLK
Sbjct: 587 EPPP-GHKWCKVVHDDKVAWLAMWKENIN-NGFKYVWLHASSAVKGRSDMKKFEVARKLK 644
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
D+I IR Y K+ S + RQ A A YLID+LALR GNEKD+D ADTVGCC+L+V +V
Sbjct: 645 DHIEKIRKKYLKELGSEELEERQRATAIYLIDRLALRVGNEKDEDTADTVGCCSLRVEHV 704
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-------QTGKKQNDDLFDKLDT 748
P + DFLGKDS++Y NTV+V+ V+K + +F + KK +DLFD+L T
Sbjct: 705 TLKEPASVTLDFLGKDSMRYHNTVDVDPRVFKNLSEFMYKGGNKKAPKKPENDLFDQLTT 764
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLN-------KGTGDGDVAVKIDVYQRANK 801
+ LN +LK M L+AKVFRTYNAS+TL+ L K T D K+ Y R N+
Sbjct: 765 SSLNKYLKGFMENLSAKVFRTYNASLTLEKELAKMPESLIKATADE----KVLFYNRCNR 820
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIED------------LKG-----VLKDLRVDLDR 844
EVAI+CNHQR++SKTH+ M ++ EKI + LKG VL D D D
Sbjct: 821 EVAILCNHQRSLSKTHTETMGKIDEKIAEFKKEKLQQQIAYLKGKGKKPVLSDSESDEDT 880
Query: 845 AKKGKP------PLMKDSD-------------------------GKRKRNLAPEALER-- 871
KK P K SD K KR L P+++E+
Sbjct: 881 PKKATPKKATPKKETKSSDEATPNKKRKKDDDEEEADDFKETPKKKVKRAL-PDSVEKCK 939
Query: 872 -KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+ + + I K K++LK+VAL TSKINY+DPRIT AW KR + I K+F+KSL
Sbjct: 940 AAIERVDTSINKWNIKKTEKDELKSVALTTSKINYIDPRITAAWAKRVGLDIGKLFSKSL 999
Query: 931 LAKFAWAMDVDPEFRF 946
KF WAMDV+ ++ F
Sbjct: 1000 REKFPWAMDVEEDWEF 1015
>gi|321262248|ref|XP_003195843.1| topoisomerase I [Cryptococcus gattii WM276]
gi|317462317|gb|ADV24056.1| topoisomerase I [Cryptococcus gattii WM276]
Length = 885
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 278/631 (44%), Positives = 377/631 (59%), Gaps = 83/631 (13%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KWT L HN V+FPPPY LP VKM Y G + L PE EEVA F +L+TDY Q
Sbjct: 257 GDGSSKWTVLEHNAVLFPPPYIPLPKDVKMKYDGVALTLPPESEEVAGFFGALLETDYAQ 316
Query: 455 KPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
KFRENF+ D++ ++ K + ++ LE CDF+P++++ +++KEKKK ++ EEKKA+
Sbjct: 317 DAKFRENFFRDFKAIVEKYPPKEDVKVKKLEKCDFRPMFEYFEKEKEKKKALTKEEKKAI 376
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K +K+K E Y++A VDG KEKVGNFR EPPGLF+GRGEHPK G +K R++P DI INIG
Sbjct: 377 KADKDKLEAPYLYANVDGRKEKVGNFRAEPPGLFKGRGEHPKKGTVKNRLRPEDIIINIG 436
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ PIP IPG+ WK ++HDNTVTWLA W + +N KYVFL+A S+ KGQSDR K+E
Sbjct: 437 KEAPIPVPNIPGQ-WKGIQHDNTVTWLAHWKENVNGNA-KYVFLSAGSAWKGQSDRAKFE 494
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+L ++ IR YT D S+ RQ A A Y ID+LALRAGNEK +DEADTVGCC+
Sbjct: 495 KARELIKHVDKIRKDYTADLKSKVMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCS 554
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDT 748
L+ +V PP + FDFLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T
Sbjct: 555 LRYEHVTLSPPCTIIFDFLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTT 614
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL +MPGLTAKVFRTYNAS T L K +G VA KI Y AN++VAI+CN
Sbjct: 615 TLLNKHLNTMMPGLTAKVFRTYNASWTFQEQLKKTPKNGTVAEKIAAYNTANRDVAILCN 674
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDG------ 858
HQ++VSK ++ +KI LK LR+ L + KK P L +D
Sbjct: 675 HQKSVSKGFEGSFAKAEDKIRALKYQRLKLRLQLFSLNPKIKKKYPELAEDESDMDDEFM 734
Query: 859 -KRKRNLAPEALE---------------------------RKMAQTNAKIEKMERDMKTK 890
+ + L +ALE ++ + A+ ++++++ K K
Sbjct: 735 ERHEAELLDKALENAKKKWDTDNVKLEGDGKKKKTKGELDERLNEIKAEFKELKKERKAK 794
Query: 891 E-DLKTVALG---TSKINYLDPRITVA------------------------------WCK 916
+ D K A ++I+ +D RI A W K
Sbjct: 795 KIDPKRSATEEKLLAQISKIDERIATAKVQLQDRDKLKDVALGTSKINYIDPRLTVAWAK 854
Query: 917 RHEVPIEKIFNKSLLAKFAWA-MDVDPEFRF 946
+ +VP+EK+F+K+L KF WA + P++ F
Sbjct: 855 KFDVPLEKLFSKTLREKFPWAEAEAGPDWVF 885
>gi|344233086|gb|EGV64959.1| hypothetical protein CANTEDRAFT_121194 [Candida tenuis ATCC 10573]
Length = 748
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/629 (42%), Positives = 365/629 (58%), Gaps = 82/629 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG+ KW +LVHNGV+FPP Y LP VK+ Y G VNL E EEVA F +++TD+ +
Sbjct: 122 DGEIKWDSLVHNGVLFPPEYEPLPSHVKLYYNGTPVNLPQEAEEVAGFFGALVETDHGKN 181
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F+ NF+ D++++L G N I+ E DF +Y ++ KE KK+MS EEK+ +KE
Sbjct: 182 PVFQSNFFKDFQQVLKECGGCNVEIEKFEHLDFSKMYAHFEQLKEDKKKMSKEEKREIKE 241
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
+K +QEE Y +++G KEK+GNFR+EPPGLFRGRG HPK G+LK+R+ P D+T+N+ +
Sbjct: 242 DKERQEEPYRTCLLNGRKEKIGNFRIEPPGLFRGRGAHPKTGRLKRRVFPEDVTLNLSEG 301
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
P+P P G SW +VKHDNTVTWLA W + I FKYV A +SS+KG SD +K+E A
Sbjct: 302 APVPPPP-EGHSWGDVKHDNTVTWLAMWKENI-ADSFKYVRFAQNSSVKGLSDFKKFETA 359
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R LK +I SIR YT+ S RQ+A ATYLID ALRAG EK DDEADTVGCC+L+
Sbjct: 360 RNLKHHIESIRKDYTQSLKSELMQERQMATATYLIDIFALRAGGEKGDDEADTVGCCSLR 419
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
+V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD++
Sbjct: 420 YEHVTLRPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLKIFKKPPKQPGDDLFDRISPPL 479
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
LN + M GLTAKVFRTYNAS T+ L+ +G VA K+ + AN+ VAI+CNHQ
Sbjct: 480 LNKKFQTYMKGLTAKVFRTYNASKTMQDQLDLIKNEGTVAEKVVRFNAANRTVAILCNHQ 539
Query: 811 RTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDGKRKRNL-- 864
RTVSK+H + ++ +K+ +L K LK + ++LD + K+ P + + K ++
Sbjct: 540 RTVSKSHGNSVQKINDKLRELMWNKIRLKQMMLELDPKLKRKDPKYFAEIEDLSKEDIMV 599
Query: 865 --------APEALERKMAQTNAKIEKMERDMKTKEDLK---------------------- 894
E + +K + N K++ +D T DLK
Sbjct: 600 IQEKILERTKEQVAKKFERDNEKLKAESKDQLTANDLKERMQKVKELQAEFKIELASGKP 659
Query: 895 ------TVALGTSKINYLDPRI------------------------------TVAWCKRH 918
TV S++ ++ RI TV + KR
Sbjct: 660 EIKKSVTVEKLKSQVEQIEQRILNTQFQLKDKEDNSEVSLGTSKMNYIDPRLTVVFSKRF 719
Query: 919 EVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D ++RF
Sbjct: 720 DVPIEKLFTKTLREKFTWAIESADKDWRF 748
>gi|396471361|ref|XP_003838854.1| similar to DNA topoisomerase 1 [Leptosphaeria maculans JN3]
gi|312215423|emb|CBX95375.1| similar to DNA topoisomerase 1 [Leptosphaeria maculans JN3]
Length = 1025
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/492 (48%), Positives = 316/492 (64%), Gaps = 27/492 (5%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
PG DG KKW TL HNGV+FPP Y LP VK +Y G + L + EEVAT + ML++
Sbjct: 386 PGKSDGTKKWDTLEHNGVVFPPEYEPLPKHVKFVYDGVPLTLHKDAEEVATFYGSMLNST 445
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F +NF+ D+ +L GK I E CDFKPI++W ++ KKK
Sbjct: 446 HNVENPTFNKNFFEDFTAILNKTGHGKDKDGKTIKITKFEKCDFKPIFEWFDSERAKKKA 505
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKKALK EK+ E YM+ I DG K+KVGNFRVEPPGLFRGRGEHPK G++KKR+
Sbjct: 506 LPAAEKKALKAEKDAAEAPYMYCIWDGRKQKVGNFRVEPPGLFRGRGEHPKTGRVKKRVA 565
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIG++ +PE P G WKEVKHD+ TWLA W + IN +KYV LAA+S +K
Sbjct: 566 PEQITINIGENAKVPEPPA-GHRWKEVKHDHEGTWLAMWQENIN-GAYKYVMLAANSDVK 623
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y KD S+ RQ A A YLID+ ALRAGNEK +D
Sbjct: 624 GQSDYKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQRATAIYLIDQFALRAGNEKGED 683
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+LK ++ PP + FDFLGKDSI++ + V+V+ V+K + F+ K
Sbjct: 684 EADTVGCCSLKFQHITLKPPETVIFDFLGKDSIRFYDEVKVDPQVFKNLKLFKKEPKTTG 743
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
DD+FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L + G + ++ Y A
Sbjct: 744 DDIFDRLTTSALNKHLNSYMTGLTAKVFRTYNASYTMARLLKEMKATGSIQERVKAYNDA 803
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+EVAI+CNH+RTV+ +H+ + ++ EKI L+ + R + +M D D K
Sbjct: 804 NREVAILCNHKRTVAASHATSIEKMNEKINGLR--YQAWRTKM---------MMIDVDPK 852
Query: 860 RKRNLAPEALER 871
K+ E ER
Sbjct: 853 IKKKKGAEYFER 864
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE M+ M+ KE K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 945 EKLEANVEKIMQRIETMKIQMEDKEGNKEVALGTSKINYIDPRLTVVFSKKFNVPIEKFF 1004
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD ++ F
Sbjct: 1005 SKTLREKFDWAIKSVDEDWEF 1025
>gi|169603291|ref|XP_001795067.1| hypothetical protein SNOG_04654 [Phaeosphaeria nodorum SN15]
gi|160706367|gb|EAT88414.2| hypothetical protein SNOG_04654 [Phaeosphaeria nodorum SN15]
Length = 887
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/489 (49%), Positives = 315/489 (64%), Gaps = 27/489 (5%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-M 453
GDG KKW TL HNGV+FPP Y LP VK++Y G V L PE EE AT + ML++ + +
Sbjct: 251 GDGSKKWDTLEHNGVVFPPEYVPLPKNVKLIYDGIPVTLQPEAEEAATFYGSMLNSTHNV 310
Query: 454 QKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSS 503
+ P F +NF+ D+ +L GK I+ E CDFKPI++ + + KK + +
Sbjct: 311 ENPTFNKNFFEDFTAILDKTGHGKDKDGKTVKIKKFEKCDFKPIFEHFEADRAAKKALPA 370
Query: 504 EEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
EKKALK EK+ E +YM+ + DG K+KVGNFRVEPPGLFRGRGEHPK G++KKR+ P
Sbjct: 371 AEKKALKAEKDAAEAEYMFCMWDGRKQKVGNFRVEPPGLFRGRGEHPKTGRIKKRVAPEQ 430
Query: 564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
ITINIG++ +P P G WKEVKHD+ TWLA W + IN +KYV LAA+S +KGQS
Sbjct: 431 ITINIGENAKVPPPP-AGHRWKEVKHDHEGTWLAMWQENINGA-YKYVMLAANSDIKGQS 488
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D +K+EKAR+LK +I IR Y ++ S RQ A A YLID+ ALRAGNEK +DEAD
Sbjct: 489 DFKKFEKARELKKHIDRIRQDYRRELKSEKMVDRQRATAIYLIDQFALRAGNEKGEDEAD 548
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDL 742
TVGCC+LK ++ PP + FDFLGKDSI++ + V+V+ V+K + F+ K DD+
Sbjct: 549 TVGCCSLKFQHITLRPPETVIFDFLGKDSIRFYDEVKVDAQVFKNLKIFKKEPKTVGDDI 608
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKE 802
FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L G + K+ Y AN+E
Sbjct: 609 FDRLTTSALNKHLTSYMPGLTAKVFRTYNASYTMARLLKSLKATGTIQEKVKAYNDANRE 668
Query: 803 VAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKR 862
VAI+CNH+RTV+ TH A + ++ EKI K LR + R K +M D D K K+
Sbjct: 669 VAILCNHKRTVAATHGASIDKMNEKI-------KGLRYQVWRTKM----MMIDVDPKIKK 717
Query: 863 NLAPEALER 871
E ER
Sbjct: 718 KKGAEYFER 726
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + N +IE M M+ KE K VALGTSKINY+DPR+TV + K+ +VPIEK F
Sbjct: 807 EKLEANIDKINQRIENMRIQMEDKEGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFF 866
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD ++ F
Sbjct: 867 SKTLREKFDWAIKSVDEDWEF 887
>gi|400602504|gb|EJP70106.1| topoisomerase I [Beauveria bassiana ARSEF 2860]
Length = 901
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 276/642 (42%), Positives = 372/642 (57%), Gaps = 99/642 (15%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML--- 448
P D KW TL HNGV+F P Y LP VK+ Y G++V L E EEVAT + M+
Sbjct: 251 PKPEDDSIKWQTLEHNGVLFAPAYEPLPKHVKLKYDGQDVTLPLEAEEVATFWVAMMTPA 310
Query: 449 DTDYMQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYD-WHQEQKEK 497
+ +++ P FR+NF++D+ +++ G+ I++L+ CDF +YD W + + K
Sbjct: 311 SSHHLENPTFRQNFFHDFSEIIKKAGGAKNAAGEKVAIKSLDKCDFGKMYDHWLAKTEAK 370
Query: 498 K-KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
K K +S EK+A K EK++ E + + DG K+KVGNFRVEPP LFRGRGEHPK G++K
Sbjct: 371 KNKNLSKVEKEAAKAEKDELEAPFTHCLWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVK 430
Query: 557 KRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAS 616
R+ P ITINIGK +PE P G WK V+HD TWLA W + IN +KYV L A+
Sbjct: 431 TRVWPEQITINIGKKAKVPEPP-KGHKWKAVQHDQKATWLAMWQENING-AYKYVMLGAA 488
Query: 617 SSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE 676
S +KGQSD +K+EKAR+LK +I IR YTK+ S RQ A A YLIDKLALRAGNE
Sbjct: 489 SDVKGQSDFKKFEKARELKKHIDKIRREYTKELKSEVMADRQRATAMYLIDKLALRAGNE 548
Query: 677 KD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
KD ++EADTVGCC+LK ++ PPN + FDFLGKDSI+Y T +V+ V+K + F+
Sbjct: 549 KDTENEADTVGCCSLKYEHITLEPPNNVTFDFLGKDSIRYNETAKVDAQVFKNLKLFKKP 608
Query: 736 KKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVA 790
K + DDLFD+L T++LN HL M GLTAKVFRTYNAS T+ +L D G +A
Sbjct: 609 PKSDGDDLFDRLTTSQLNKHLNSYMQGLTAKVFRTYNASFTMSRLLRDLEKDPRSRGSIA 668
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVLKDLRVDLD---R 844
K+ +Y N+EVAI+CNH+R+V +H QM +L ++I+ L+ K + +D+D +
Sbjct: 669 EKVKLYNDCNREVAILCNHKRSVGASHEQQMQKLGDRIKGLRYQQWRTKMMMLDIDPSQK 728
Query: 845 AKKGKPPLMKDSD-----------------------------GKRK-------------- 861
KKG D + KRK
Sbjct: 729 KKKGAAYFQLDEEIDKEWILEHQQFLIEEQRTKITKKFEKDNEKRKAEKEKPLPEKELKE 788
Query: 862 RNLAPEALERKMAQTN------------------AKIEKMERDMKTKEDL-------KTV 896
R LA + LE K + N A++EK++ +K E K V
Sbjct: 789 RLLAVKDLEAKFKKENKTNKVEAEGRGPTVEKLLAQVEKIDDRVKVLETQAEDRDGNKEV 848
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
ALGTSKINY+DPR+TV + K+ +VPIEK F+K+L KF WA+
Sbjct: 849 ALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRDKFRWAI 890
>gi|330921713|ref|XP_003299539.1| hypothetical protein PTT_10547 [Pyrenophora teres f. teres 0-1]
gi|311326764|gb|EFQ92378.1| hypothetical protein PTT_10547 [Pyrenophora teres f. teres 0-1]
Length = 905
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/492 (49%), Positives = 317/492 (64%), Gaps = 27/492 (5%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
PG DG KKW TL H GV+FPP Y LP VK++Y G V L + EEVAT + ML++
Sbjct: 266 PGKNDGTKKWDTLEHAGVVFPPEYEPLPKHVKLVYDGVPVTLHKDAEEVATFYGSMLNST 325
Query: 452 Y-MQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F +NF+ D+ +L K N V I+ E C+FKPI++W ++ KKK
Sbjct: 326 HNVENPTFNKNFFEDFTAILDKTGHGKDKSGNTVKIKKFEKCNFKPIFEWFDAERAKKKA 385
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+S EKKALK EK E YM+ + DG K+KVGNFRVEPPGLFRGRGEHPK G++KKR+
Sbjct: 386 LSVAEKKALKAEKEAAEADYMYCLWDGRKQKVGNFRVEPPGLFRGRGEHPKTGRVKKRVM 445
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIG+ IPE P G WKE+KHD+ TWLA W + IN +KYV LAA+S +K
Sbjct: 446 PEQITINIGEKAKIPEPP-AGHRWKEIKHDHEGTWLAMWQENINGA-YKYVMLAANSDIK 503
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y KD S+ RQ A A YLID+ ALRAGNEK +D
Sbjct: 504 GQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQRATAIYLIDQFALRAGNEKGED 563
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+LK ++ PP + FDFLGKDSI++ + V+V+ V+K + F+ K
Sbjct: 564 EADTVGCCSLKFQHITLRPPETVIFDFLGKDSIRFYDEVKVDPQVFKNLKLFKKEPKTTG 623
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
DD+FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L + G V K+ Y A
Sbjct: 624 DDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNASYTMARLLKEMKATGTVQEKVKAYNDA 683
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+EVAI+CNH+RTV+ +H+ + ++ E+I L+ + R + +M D D K
Sbjct: 684 NREVAILCNHKRTVAASHATSIEKMNERINGLR--YQAWRTKM---------MMIDVDPK 732
Query: 860 RKRNLAPEALER 871
K+ E ER
Sbjct: 733 IKKKKGAEYFER 744
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +IE M+ M+ KE K VALGTSKINY+DPR+TV + K+ VPIEK F
Sbjct: 825 EKLEANVEKIVQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTVVFSKKFGVPIEKFF 884
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 885 SKTLREKFDWAIKSVDENWEF 905
>gi|302680196|ref|XP_003029780.1| hypothetical protein SCHCODRAFT_58495 [Schizophyllum commune H4-8]
gi|300103470|gb|EFI94877.1| hypothetical protein SCHCODRAFT_58495 [Schizophyllum commune H4-8]
Length = 810
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/449 (50%), Positives = 312/449 (69%), Gaps = 17/449 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL H+GVIFPPPY LP VKM Y GK VNL+ E EEVA +A +L++D+ Q
Sbjct: 181 DNSVKWTTLEHSGVIFPPPYEPLPKDVKMKYNGKPVNLSVEAEEVAGFYAALLESDHAQD 240
Query: 456 PKFRENFWNDWRKLLGKN-----HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
F +NF++DW+++L K+ I +LE CDF+P++++ + +K KKK M+ EKK LK
Sbjct: 241 ATFNKNFFHDWKEVLKKHPPLDGTQITSLEACDFRPMFEYFEAEKAKKKAMTQAEKKELK 300
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
++ + E KY + ++DG KE+VGNFRVEPPGLFRGRG+HP+ G LK R++P DI +NIGK
Sbjct: 301 AQREEAEAKYKFCLLDGRKEQVGNFRVEPPGLFRGRGDHPRKGALKHRVRPEDIILNIGK 360
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D P+P +PG+ WK ++HD TVTWLA W + +N + KYVFLAA SSLKGQSD +K+EK
Sbjct: 361 DAPVPVPNMPGQ-WKGIQHDQTVTWLATWTENVN-QNHKYVFLAAGSSLKGQSDMQKFEK 418
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
AR+LK+++ IR+ Y D S+ RQ A A Y IDKLALRAGNEK +DEADTVGCC+L
Sbjct: 419 ARELKNHVDRIRSNYENDLKSKVMAERQRATAMYFIDKLALRAGNEKGEDEADTVGCCSL 478
Query: 691 KVGNVECIPPNK----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKL 746
+ +V + +K + FDFLGKDSI+Y N V+V+ ++K + F+ K +D LFD++
Sbjct: 479 RCEHV-TLENDKGEYYITFDFLGKDSIRYYNRVQVDQQIFKNVRIFKENKNDDDSLFDRV 537
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK---GTGDGDVAVKIDVYQRANKEV 803
+T+ LN HL M GLTAKVFRTYNASIT +L++ + + K++ Y AN+ V
Sbjct: 538 NTSSLNKHLTTEMKGLTAKVFRTYNASITFQRLLDESGPSLKNATLQEKLNAYNDANRMV 597
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
A++CNHQR+V KT M ++ K+ LK
Sbjct: 598 AVLCNHQRSVPKTFEQSMEKMRRKVMGLK 626
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L E+I+D++ K L+ + GK K ++ K K N+ E L++++ QT +I
Sbjct: 700 LKERIKDIEDKYKALKKERG---TGKADPGKKTEEKIKDNI--EKLDQRIKQTKLQI--- 751
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE 943
K+ K +ALGTSKINYLDPRIT +W K HEVPI K+F+K+L+ KF WAM+VD +
Sbjct: 752 ----TDKDAGKEIALGTSKINYLDPRITASWAKIHEVPINKMFSKTLVQKFPWAMEVDED 807
Query: 944 FRF 946
++F
Sbjct: 808 WKF 810
>gi|156085707|ref|XP_001610263.1| DNA topoisomerase [Babesia bovis]
gi|154797515|gb|EDO06695.1| DNA topoisomerase [Babesia bovis]
Length = 701
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/596 (44%), Positives = 366/596 (61%), Gaps = 62/596 (10%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W L HNG+IF P Y PHG+ + +KG+ + LTP+ EEVAT +A + T+Y + +R NF
Sbjct: 116 WEYLEHNGMIFTPEYKPHGIPIKFKGEPITLTPDLEEVATFWAQSIGTNYEESEIYRRNF 175
Query: 463 WNDWRKLLGKNHVIQ----NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEE 518
WN + + K HVI+ L+ CDF I H + + +KK+ E KALKEE K+E
Sbjct: 176 WNTFTSMFPKGHVIRKSKATLKDCDFSEIRA-HLDMEREKKKEQKEYYKALKEETAKKEH 234
Query: 519 KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP 578
Y +A+VD ++EKVG+ R+EPPGLF+GRG HPK G LK R P + +N+ KD P+P+
Sbjct: 235 PYCYALVDWIREKVGSNRMEPPGLFKGRGLHPKQGLLKGRTFPHSVVLNLSKDAPVPKVS 294
Query: 579 I---PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
+ G W ++ HD++VTWLA++ D +N + KY++ AA S KG D KY KAR+LK
Sbjct: 295 MFERQGHGWSDIFHDSSVTWLAYYRDTVNDQT-KYMYPAAQSKFKGLHDFLKYSKARELK 353
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
+I IR Y S + RQ+ ATYLID LALR G EKD DEADTVGCC+L+V ++
Sbjct: 354 KHIMKIRKDYHGKMRSPEIVDRQLGTATYLIDFLALRVGGEKDADEADTVGCCSLRVEHI 413
Query: 696 EC-IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
+ PN + DFLGKDSI+Y +TV ++ + + +F KK +D+FDK++T KLN +
Sbjct: 414 KFDRKPNTITLDFLGKDSIRYFHTVTLDEVACRNLSEF-CKKKPTEDIFDKINTVKLNDY 472
Query: 755 LKELMPGLTAKVFRTYNASITL---------------DGMLNKGTGDGDV--AVKIDV-- 795
LK+LM GLTAKVFRTYNASITL ML G D D+ V +DV
Sbjct: 473 LKDLMTGLTAKVFRTYNASITLCRQLRRLKVRKSLDSSLMLQPGKSDDDLDKPVLVDVTD 532
Query: 796 -------YQRANKEVAIICNHQRTVSKTHSAQMSRL-------TEKIEDLKGVLKDLRVD 841
Y AN+ VAI+CNHQR++ K H + MS++ +E+I +L+ +K L
Sbjct: 533 VNELISFYNEANRRVAILCNHQRSIPKQHESSMSKMQAQAELISEEIAELQAYMKYL--- 589
Query: 842 LDRAKKGKPPLMK----DSDGK-----RKRNLAPEALERKM--AQTNAKIEKMERDMKTK 890
+ + KP + D+ G ++ + EA ++K+ A +K+ ++ M+ K
Sbjct: 590 --ESNQTKPFTFESRTVDAKGNPRKAATRQGMKLEACQKKLETAMKRSKVHAIK--MRIK 645
Query: 891 EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
+D KTVALGTSKINY+DPRITVA+CKR+EVPIEKIFNKSL KF WAM ++ F
Sbjct: 646 DDNKTVALGTSKINYMDPRITVAFCKRYEVPIEKIFNKSLRTKFPWAMYAGADYIF 701
>gi|328858386|gb|EGG07499.1| hypothetical protein MELLADRAFT_116253 [Melampsora larici-populina
98AG31]
Length = 937
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 298/691 (43%), Positives = 410/691 (59%), Gaps = 50/691 (7%)
Query: 191 KSDDNDSEDDKPLSARL--KGNSKNVNQGIGASKA---DAAISEVNVKTDPED--SDDEV 243
+++++DSE+D P++ K SK N+ I S + ++ N+KT E S+DE
Sbjct: 82 QTEESDSEEDLPIANTQPKKRTSKTSNESIDGSSTLTTNTDSTKTNLKTQDESDLSEDEP 141
Query: 244 PLSSRFP---KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRP-LQK 299
+ + P K N T ++ S+ KK + + S+ + S ++P K+P L K
Sbjct: 142 IMKQKLPSFKKINQTTQPSRRSISNSKK-IKREPSSGASSDDDAPIVSKAMPTKKPRLSK 200
Query: 300 ASSSGASS-------AKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSV 352
+ A KP+ + SK K K + KVE D D PI K +
Sbjct: 201 SIQPKIEEPDIKPVIATKPRSAAKSK--KSKDIKPKVE---DLDSVAPIPLADKKPIKAK 255
Query: 353 KKSVTNTAKATKSVSSSSN-KINKKTKKVIKNSQYSKSTKMLPGS---------GDGQKK 402
K+ NT T S S++++ K NKK KV K + + + + D KK
Sbjct: 256 AKAKPNT---TASASTNADSKPNKKGAKVKKEEEQKGTDEEAEDAEYKWWEQTKDDDTKK 312
Query: 403 WTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRE 460
W TL HNGV+FPP Y LP VKM Y+GK V+L PE EEVA F ML++D+ QKP F +
Sbjct: 313 WDTLQHNGVLFPPEYVPLPKHVKMKYEGKSVDLPPESEEVAGFFGAMLNSDHCQKPTFCQ 372
Query: 461 NFWNDWRKLLGKN-----HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
NF+ND+ ++L + I + E CDF PI++++ ++E+KK +S EEK LK+EK++
Sbjct: 373 NFFNDFLEVLALHPPRDRTKITSFEKCDFTPIFEYYDAERERKKSLSKEEKTKLKKEKDE 432
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
E+++ + ++DG +EKVGNFRVEPP LFRGRGEHPK G+LKKRI DITIN KD PIP
Sbjct: 433 LEKQFQFCLLDGRQEKVGNFRVEPPSLFRGRGEHPKTGRLKKRIYAEDITINCSKDAPIP 492
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
P G W V H + +WLA W + IN FKYVFLA SSLKGQSD +K+EKAR+LK
Sbjct: 493 -IPPAGHQWGSVVHLDKASWLAMWKENIN-GAFKYVFLAPGSSLKGQSDMKKFEKARQLK 550
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
+I IRA Y ++ + RQ A A YLID LALRAGNEK DDEADTVGCC+L+ ++
Sbjct: 551 LHIERIRADYRQELEDKVMATRQRATAMYLIDVLALRAGNEKGDDEADTVGCCSLRYEHL 610
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAH 754
PP+ + FDFLGKDSI++ NTV+V+ V+K + F+ K D +FD+L T+ LN H
Sbjct: 611 TLEPPSTVTFDFLGKDSIRFFNTVQVDEAVFKNLRIFKKEPKAIGDMIFDRLTTSSLNKH 670
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV---AVKIDVYQRANKEVAIICNHQR 811
L + MPGLTAKVFRTYNAS T + L K + V A KI Y +AN++VA++CNHQ+
Sbjct: 671 LSDYMPGLTAKVFRTYNASFTFERELEKNMNELKVPTLAEKIYAYNKANRQVAVLCNHQK 730
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
+VSK H M + EKI+ +K + LR L
Sbjct: 731 SVSKGHETSMEKAYEKIKAMKYQRRRLRYQL 761
>gi|50305025|ref|XP_452470.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641603|emb|CAH01321.1| KLLA0C06116p [Kluyveromyces lactis]
Length = 785
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/626 (42%), Positives = 369/626 (58%), Gaps = 88/626 (14%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGVIFP Y LP VK+ Y GK V+L P+ EEVA FA +L++D+++
Sbjct: 156 DDTIKWTTLKHNGVIFPSTYEPLPAHVKLYYNGKPVDLPPQAEEVAGFFAAILESDHVKI 215
Query: 456 PKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF +D+ ++L +N I+ DF I+++ Q QKE+KKQ+S +EKK L
Sbjct: 216 PTFQKNFLHDFLQVLKENGGARNGVQIKEFGKLDFTKIFEYFQVQKEQKKQLSPQEKKQL 275
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ EK + E+ Y + +DG E+VGNFR+EPPGLFRGRG HPK GKLK+R+ P D+ +N+
Sbjct: 276 RLEKEELEKPYKFCEIDGRVEQVGNFRIEPPGLFRGRGAHPKNGKLKRRVYPEDVVLNLD 335
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ PIPE P G W E++HDNTV WL+ W + I+ FKYV AA+S+LKG SD +K+E
Sbjct: 336 KEAPIPEPP-KGHKWGEIRHDNTVQWLSMWRENIS-NSFKYVRFAANSTLKGMSDFKKFE 393
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR LKD+I +R Y S RQ+AVATYLID ALRAG EK DDEADTVGCC+
Sbjct: 394 KARMLKDHIDKVRTDYKSKMKSPKTLDRQMAVATYLIDVFALRAGGEKADDEADTVGCCS 453
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ---TGKKQNDDLFDKL 746
L+ +V PPN + FDFLGKDSI+Y VEV+ V+K + F+ +G LFD+L
Sbjct: 454 LRYEHVTLRPPNTVVFDFLGKDSIRYYQEVEVDAQVFKNLKIFKRPPSGPGHQ--LFDRL 511
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAII 806
D + LN HL+ MPGLTAKVFRTYNAS T+ L+ +G VA KI Y AN+ VAI+
Sbjct: 512 DPSILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKILRYNAANRTVAIL 571
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGK-------------- 849
CNHQRTV+K H++ + + TE+IE+L K K + LD++++ K
Sbjct: 572 CNHQRTVTKGHASSVQKATERIEELEWQKVRYKRAILQLDKSERKKNQNYFKEIDDLTKE 631
Query: 850 ------PPLMKDSDGKRKRNLAPEALERKMAQTN-----------AKIEKMER------- 885
+++ K KR E +RK ++ + AK++ +E+
Sbjct: 632 EELTIHKRIIEREREKYKRKFERENEKRKFSKEDPIPDSQLLEWLAKVDDLEKLYEREST 691
Query: 886 --DMKTKEDLKTVALGTSKINYLDPRIT------------------------------VA 913
++ +E L+ + + L+ RIT VA
Sbjct: 692 TGKIELRESLQNLEKLKQNVEKLEKRITNCSLQLKDKEDNSTVALGTSKINYIDPRLSVA 751
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMD 939
+CK+ +VPIEK+F K+L KF WA++
Sbjct: 752 FCKKFDVPIEKVFTKTLRDKFRWAIE 777
>gi|367005136|ref|XP_003687300.1| hypothetical protein TPHA_0J00430 [Tetrapisispora phaffii CBS 4417]
gi|357525604|emb|CCE64866.1| hypothetical protein TPHA_0J00430 [Tetrapisispora phaffii CBS 4417]
Length = 787
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/445 (53%), Positives = 305/445 (68%), Gaps = 13/445 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG +WTT HNGV+FPP Y LP +K+ Y G V+L P EEVA +A ++ TD+ Q
Sbjct: 155 DGSVQWTTFRHNGVLFPPVYVPLPSHIKLYYDGNPVDLPPAAEEVAGFYAGVIGTDHEQN 214
Query: 456 PKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P FR+NF+ D++K+L +N I+N CDF I D+ Q+QKE KKQ+S++EKK L
Sbjct: 215 PIFRKNFFTDFKKVLQENGGTLNGVSIENFSKCDFSRIVDYLQQQKEIKKQLSAQEKKQL 274
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ EK + EE Y + V+G +E+VGNFRVEPP LFRGRG HPK GKLK+RI P DI +N+
Sbjct: 275 RIEKEEFEEPYKFCEVNGRREQVGNFRVEPPDLFRGRGAHPKTGKLKRRIYPEDIVLNLD 334
Query: 570 KDVPIPECPIP-GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
KD PIP P+P G W E+KHDNTV WLA W + I+ FKYV LAA+SS KGQSD +K+
Sbjct: 335 KDAPIP--PVPEGHHWGEIKHDNTVQWLAMWRENIS-NSFKYVRLAANSSFKGQSDLKKF 391
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EKAR+LK +I++IR Y K+ ++ RQ AVA YLID ALRAG EK DDEADTVGCC
Sbjct: 392 EKARELKKHINTIRRDYKKNMKNKLMVERQKAVAIYLIDVFALRAGGEKSDDEADTVGCC 451
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-QTGKKQNDDLFDKLD 747
+L+ +V PP + FDFLGKDSI++ VEVE V+K + F + KK D LFD+LD
Sbjct: 452 SLRYEHVTLKPPQTVIFDFLGKDSIRFYQEVEVEKQVFKNLAIFKRLPKKPGDQLFDRLD 511
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIIC 807
+ LN L+ MPGLTAKVFRTYNAS T+ L+ G VA K+ Y AN+ VAI+C
Sbjct: 512 PSILNKFLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKLLKYNAANRTVAILC 571
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLK 832
NHQRT+SKTH + + +++I +L+
Sbjct: 572 NHQRTISKTHKQTIEKASDRIRELE 596
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E +E+++ + +IE +K +E+ V+LGTSKINY+DPR++V +CK++++PIEKIF
Sbjct: 707 EKIEKQLEKLKLRIETSSIQLKDREENSQVSLGTSKINYIDPRLSVVFCKKYDIPIEKIF 766
Query: 927 NKSLLAKFAWAMD-VDPEFRF 946
K+L KF WA++ VD +RF
Sbjct: 767 TKTLREKFKWAIESVDENWRF 787
>gi|348555915|ref|XP_003463768.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Cavia
porcellus]
Length = 596
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 256/557 (45%), Positives = 341/557 (61%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP V+ Y GK V L+ EEVAT + MLD +Y K F+
Sbjct: 47 KWRQLEHRGPYFAPAYEPLPEEVQFCYDGKPVKLSLAAEEVATFYGKMLDHEYTTKEVFQ 106
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+NDW+K + + +I++L+ CDF I+ ++ + + EEK+ LKEE K E
Sbjct: 107 NNFFNDWQKEMTVEERCLIKHLDKCDFTEIHRHFIDKAAAWRALPREEKQKLKEEAEKLE 166
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLF GRG+HPKMG LK+RI+P D+ IN +D IPE
Sbjct: 167 QEFGYCILDGHREKIGNFKMEPPGLFCGRGDHPKMGMLKRRIRPEDVIINCSRDSKIPE- 225
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L SS LKG+ D +KYE AR+LK
Sbjct: 226 PPAGHQWKEVRSDNTVTWLAAWTENVQ-NSIKYIMLNPSSKLKGEKDWQKYETARRLKGV 284
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
++ IR+ Y D+ S D + Q VA Y IDKLALR GNEK++ ADTVGCC+L+V +V
Sbjct: 285 VNEIRSQYRADWKSLDMKKSQRGVALYFIDKLALRTGNEKEESRTADTVGCCSLRVEHVR 344
Query: 697 CI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
+ ++ DFLGKDS++Y N V VE PV+ + F K D LFDKL T+ L
Sbjct: 345 LHRHANGHQHVVELDFLGKDSVRYHNCVPVEKPVFWNLQLFMANKDPGDKLFDKLTTSSL 404
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++ M GLTAKVFRTYNAS L T + A KI Y RAN+ VAI CNHQ
Sbjct: 405 NKHLQDSMDGLTAKVFRTYNASTIFQEQLQVLTRAEDSTAAKILAYNRANRAVAIYCNHQ 464
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R KT + L KI+ K + + + +L +K + DGK KR L E +
Sbjct: 465 RAAPKTFEKSVRNLQTKIQAKKIQIAEAQEEL---RKAEVDHRIKGDGKSKRIL--EKKQ 519
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
R + + ++ + KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K
Sbjct: 520 RLLQKLEEQLGHLSTQAIDKEENKHVALGTSKLNYLDPRISIAWCKRFGVPVEKIYSKLQ 579
Query: 931 LAKFAWAMD-VDPEFRF 946
AKFAWA D +D +F F
Sbjct: 580 RAKFAWAFDMMDEDFEF 596
>gi|425766626|gb|EKV05229.1| Topoisomerase I [Penicillium digitatum Pd1]
gi|425775277|gb|EKV13555.1| Topoisomerase I [Penicillium digitatum PHI26]
Length = 876
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 301/736 (40%), Positives = 420/736 (57%), Gaps = 105/736 (14%)
Query: 161 SPLDDR-LKQSPQHNALAVVKKEEIKDGNGLKS--DDNDSEDDKPLSARLKGNSKNVNQG 217
P++D+ +K + AL +K++ KS + SE+D+PLS R +
Sbjct: 49 GPVEDKDVKMEDEEGALGAIKRKSRTSLGEKKSYVEAESSEEDEPLSKRRR--------- 99
Query: 218 IGASKADAAISEVNVKTDPEDSDDEVPLSS---RFPKSNAGTSGAKPIDSDEKKPLASKV 274
+VK + ++DD+VPL+ + PK+ A TS DSD
Sbjct: 100 ------------TSVKHEDLETDDDVPLARNGRKLPKA-AETSIGDESDSD--------- 137
Query: 275 QQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTS-KEVKVKQVTVKVEKKA 333
VP++R L + +K K+ T+ KE K+ + V +K+A
Sbjct: 138 ----------------VPIERKL---------AVQKKKIEQTAEKEAKLARKLVAPKKEA 172
Query: 334 DDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML 393
P++ + + +A VKK + A K + + K T KV SQ ++ +
Sbjct: 173 K-----PVAAKKQTNA--VKKEPAASKSAPKKMKAEPASAKKGTAKVKAESQDAEEKEEE 225
Query: 394 P----------GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVA 441
GDG KWTTL HNGV+FPP Y LP VK+ Y G V+L PE EEVA
Sbjct: 226 EEDEYRWWEDHNKGDGTIKWTTLEHNGVVFPPEYEVLPGNVKLKYDGVPVSLAPEAEEVA 285
Query: 442 TMFAVMLDTDY-MQKPKFRENFWNDWRKLLGKNHVIQNLEG----------CDFKPIYDW 490
T F ML++ + ++ P F++NF+ D+++++ K ++ +G CDFK I+++
Sbjct: 286 TFFGSMLNSTHNVENPVFQKNFFGDFKEVVKKTGGAKDAKGNKIDIKEFAKCDFKSIFNF 345
Query: 491 HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 550
+ Q+E+K+ + EKKA K K++QE Y + + DG K+KVGNFRVEPP LFRGRGEHP
Sbjct: 346 YDAQREEKRNLPPAEKKAAKALKDEQEAPYQFCVWDGRKQKVGNFRVEPPSLFRGRGEHP 405
Query: 551 KMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKY 610
K G++K R+QP ITINIGKD +P P PG WKEVKHD TWLA W + IN +KY
Sbjct: 406 KTGRVKTRVQPEQITINIGKDARVPPPP-PGHKWKEVKHDQEGTWLAMWQENINGN-YKY 463
Query: 611 VFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLA 670
V LAA+S +KGQSD +K+EKAR+LK +I IR Y K+ RQ A A YLID+ A
Sbjct: 464 VMLAANSDVKGQSDFKKFEKARELKKHIEKIRKDYQKNLKHDMMVERQKATAVYLIDQFA 523
Query: 671 LRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIG 730
LRAGNEK +DEA+TVGCC+LK NV PPN + FDFLGKDSI++ + V+V+L V+K +
Sbjct: 524 LRAGNEKGEDEAETVGCCSLKYENVTLKPPNTVVFDFLGKDSIRFYDEVQVDLQVFKNLK 583
Query: 731 QFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG--TGDG 787
F+ KK D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +LN+ TG G
Sbjct: 584 IFKKAPKKSGDEIFDRLTTSALNKHLANYMPGLTAKVFRTYNASYTMGCVLNEMNPTG-G 642
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD- 843
VA K+ Y AN++VAI+CNH+RTV+ H+ M ++ E+I+ L K LK +DLD
Sbjct: 643 TVAEKVKAYNDANRKVAILCNHKRTVTAGHANAMEKMGERIKGLRYQKWRLKQQMLDLDP 702
Query: 844 --RAKKGKPPLMKDSD 857
+ KKG D D
Sbjct: 703 TLKKKKGTAFFEIDED 718
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKE-VAIICNHQRT- 812
+ E + GL + +R + LD L K G + D+ + +E A + QRT
Sbjct: 679 MGERIKGLRYQKWRLKQQMLDLDPTLKKKKGTAFFEIDEDLDKEWIEEHQAFLIEEQRTK 738
Query: 813 VSKTHS-------------AQMSRLTEKIEDLKGVLKDLRVDLDRAKK-GKPPLMKDSDG 858
+SK + S L E+++ V+K++ R K GK +
Sbjct: 739 ISKKFEKDNEKRVADGEKEMKASELEERLQ----VVKEMEKKFKRENKTGKVEV------ 788
Query: 859 KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
R E LE + + + ++E M + KED K VALGTSKINY+DPR+TV + K++
Sbjct: 789 -EARGATVEKLEGSITKIDQRVETMSVQAQDKEDNKEVALGTSKINYIDPRLTVVFSKKY 847
Query: 919 EVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+VPIEK F+K+L KF WA+ V+ ++ F
Sbjct: 848 DVPIEKFFSKALREKFEWAIKSVEEDWEF 876
>gi|452841954|gb|EME43890.1| hypothetical protein DOTSEDRAFT_71635 [Dothistroma septosporum
NZE10]
Length = 902
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 278/646 (43%), Positives = 380/646 (58%), Gaps = 95/646 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KW TL HNGV+FPP Y LP VK+LY G V++ E EE+A F ML++
Sbjct: 259 PAKGDGSTKWNTLEHNGVVFPPEYEPLPKNVKLLYDGVPVSMHSEAEEIAHAFGAMLNSA 318
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF D+++ + GK I E CDFKPI++ +++ KK
Sbjct: 319 HNVENPTFQKNFMADFKEKMAETGNAKDPQGKQVKITTFEKCDFKPIFNHVDAERQAKKA 378
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKK LK EK++ E Y++ + DG K+KVGNFRVEPPGLFRGRGEHPK GK KKR+
Sbjct: 379 LPAAEKKKLKAEKDELEAPYLYCVWDGRKQKVGNFRVEPPGLFRGRGEHPKTGKWKKRVT 438
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P+ P G WKE+KHDNT TWLA W + IN +KYV LAA+S +K
Sbjct: 439 PEQITINIGKEATVPKPP-EGHKWKEIKHDNTATWLAMWQENINGA-YKYVMLAANSDIK 496
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR YTK+ S RQ A A YLID+ ALRAGNEK DD
Sbjct: 497 GQSDYKKFEKARELKKHIDRIRKDYTKELKSEIMAERQRATAVYLIDQFALRAGNEKSDD 556
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-QTGKKQN 739
EADTVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV V+K + F ++ KK
Sbjct: 557 EADTVGCCSLKYENVTLKPPNKIIFDFLGKDSIRFYDEVEVTDQVFKNLKIFKRSPKKDG 616
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT----GDGDVAVKIDV 795
D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L + T G +A ++
Sbjct: 617 DEIFDRLTTSGLNKHLSNYMQGLTAKVFRTYNASYTMSQLLQQMTPDHSGKTAIAEQVKA 676
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGV---LKDLRVDLDRAKKGK--- 849
Y AN++VAI+CNH+RTV+ +H+ QM ++ +K+ L+ +K + +D+D +K K
Sbjct: 677 YNDANRKVAILCNHKRTVAASHAQQMEKMEDKMNALRYQQYRVKHMMLDVDPKQKKKRGA 736
Query: 850 ------PPLMKDSDGKRKRNLAPEA---LERKMAQTNAKIE--------------KM--- 883
L K+ G + L E +++K + N K+E +M
Sbjct: 737 DYFELPEGLDKEWQGTHHKALVEEQRTKIQKKFDKENEKLEAEGDKPMKAKELEDRMEPV 796
Query: 884 -ERDMKTKEDLKT---VALGTSK--------INYLDPRI--------------------- 910
E + K K++LK+ A G S + LD RI
Sbjct: 797 KELEAKLKKELKSGKVEAEGKSASVEKYEKDLEKLDTRIATMQTQAEDRDNNKEVALGTS 856
Query: 911 ---------TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+ +VPIE+ F+K+L KF WA+ VD ++ F
Sbjct: 857 KINYIDPRLTVVFSKKFDVPIERFFSKTLREKFDWAIKSVDEDWEF 902
>gi|323448323|gb|EGB04223.1| hypothetical protein AURANDRAFT_70404 [Aureococcus anophagefferens]
Length = 651
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/633 (41%), Positives = 375/633 (59%), Gaps = 37/633 (5%)
Query: 336 DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPG 395
+D + IS + K + ++++ + + + +S+ K K ++ I ++ S P
Sbjct: 26 EDVVQISDKGKGTRKKMRRASCHDSGSDGEISAMKRKKMKSAEQGIAAFEWWNS----PD 81
Query: 396 SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM------LD 449
+G K W TL H G+ F P Y PHG+ M+Y G ++LTP QEE+AT +A M L+
Sbjct: 82 PPEG-KAWQTLEHCGMTFEPQYKPHGIAMVYDGVPISLTPYQEELATFYAAMPEDGPQLN 140
Query: 450 TDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
Q+ F+ NFW+DW K+LGK+H I++ + CDF I K K+ S EK
Sbjct: 141 VSGGQREIFQRNFWDDWHKVLGKSHAIKSFDKCDFSDISKHLDRLKFVKRAASDAEKVVA 200
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+E ++ + + +AI+D EKVGNFR+EPP LFRGRG+HPK G +K R++P ++IN G
Sbjct: 201 RELRDDCQLRSGYAILDDHLEKVGNFRMEPPSLFRGRGKHPKTGVVKLRVEPDQVSINCG 260
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
P P C G SW E+KHD+TVTWL+ W++ + KYV LAA+SSLKG+SD +K++
Sbjct: 261 ASRPPPICLELGRSWGEIKHDDTVTWLSTWHENVMQSN-KYVMLAANSSLKGKSDFKKFQ 319
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KA +LK I +R Y K+ S+D +Q A +LID LALR G EK ++EADTVGCC+
Sbjct: 320 KAMQLKGCIERVRHGYHKNLKSKDRHLKQQATTMWLIDTLALRVGGEKSEEEADTVGCCS 379
Query: 690 LKVGNVECIPPNK-LKFDFLGKDSIQYVNTV------EVELPVYKAIGQFQTGKKQNDDL 742
L+V + K + +FLGKDSI + ++ E Y I + KK+N+ +
Sbjct: 380 LRVEHFTFHKTGKDVDLEFLGKDSILFKQSIDFAGFDEHGQQAYDNIREMCRSKKKNEQV 439
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML--------NKGTGDGDVAVKID 794
F+ ++ LNAHL +MPGLTAKVFRTYNAS TL L + GD K+
Sbjct: 440 FELIEPTSLNAHLSSIMPGLTAKVFRTYNASETLQNQLPDAEHVLEMRSIGD-----KLI 494
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMK 854
Y AN+ VAI+CNHQRTVS + + EK+E LK ++L+ K GK
Sbjct: 495 AYNEANRIVAILCNHQRTVSAAAATGLEAQAEKLEQLKDQRRELQNMRTTLKAGK----D 550
Query: 855 DSDGKRKRNLAPEA-LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
+++ R L E + +++ KI+K+E D++ KE+ K V+LGTSK NYLDPRI+VA
Sbjct: 551 NAEAHRFAKLPDEKDVSKRIDIWTEKIKKLEIDLRNKEENKEVSLGTSKANYLDPRISVA 610
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKR +VPIEK+F+K+L KFAWA+ V +RF
Sbjct: 611 WCKRCDVPIEKLFSKTLKQKFAWALTVGSSWRF 643
>gi|194379456|dbj|BAG63694.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/510 (48%), Positives = 326/510 (63%), Gaps = 17/510 (3%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + I KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESIQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 RDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR T M L KI+ K +V RA+ + +
Sbjct: 359 RANRVVAILCNHQRATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQ 413
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
G K E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR
Sbjct: 414 GDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKR 473
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
VP+EKI++K+ +FAWA+ + E F F
Sbjct: 474 FRVPVEKIYSKTQRERFAWALAMAGEDFEF 503
>gi|386642871|ref|NP_001245375.1| DNA topoisomerase I, mitochondrial isoform 2 [Homo sapiens]
gi|386642873|ref|NP_001245376.1| DNA topoisomerase I, mitochondrial isoform 2 [Homo sapiens]
Length = 503
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/510 (47%), Positives = 326/510 (63%), Gaps = 17/510 (3%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 RDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR T M L KI+ K +V RA+ + +
Sbjct: 359 RANRVVAILCNHQRATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQ 413
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
G K E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR
Sbjct: 414 GDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKR 473
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
VP+EKI++K+ +FAWA+ + E F F
Sbjct: 474 FRVPVEKIYSKTQRERFAWALAMAGEDFEF 503
>gi|88192407|pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani
Topoisomerase I-Vanadate-Dna Complex
Length = 432
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/417 (55%), Positives = 294/417 (70%), Gaps = 5/417 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 18 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 77
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
R NF+ WR++L K H I+ LE CDF+PIY WH Q+EKK + EEKKA+KE+++ +
Sbjct: 78 RRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEA 137
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK R+QP DITINIG+ +P
Sbjct: 138 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVP-V 196
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V+HD+TVTWLA W D + KYV LA SSS+KGQSD K+EKARKLKD
Sbjct: 197 PPAGHKWAAVQHDHTVTWLAMWRDSV-AGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDK 255
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IRA+Y +DF S D Q AVA Y ID+LALR GNEK +DEADTVGCC+L+V +++
Sbjct: 256 VDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 315
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+P N ++FDFLGKDSI+Y N V V VY + +F K D+FD+L+ +LN HLK
Sbjct: 316 MPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKS 375
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGD--GDVAVKIDVYQRANKEVAIICNHQRT 812
M GL+AKVFRTYNASITLD + D A K+ + +AN EVAI+CNHQ++
Sbjct: 376 FMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKS 432
>gi|326481179|gb|EGE05189.1| topoisomerase I [Trichophyton equinum CBS 127.97]
Length = 892
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 274/642 (42%), Positives = 374/642 (58%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VK+ Y G V L P+ EEVA+ F ML++
Sbjct: 253 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKLKYAGVPVTLHPDAEEVASHFGTMLNST 312
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK I+ CDF+ I++ +++ + +KK
Sbjct: 313 HNVENPIFQKNFFNDFQAIIKKTGGAKDPQGKPIQIKEFSKCDFRTIFEHYEKLRAEKKA 372
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKKA K EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G +K R+
Sbjct: 373 MSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGTVKTRVM 432
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 433 PEQITINIGKDAPVP-APPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 490
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 491 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 550
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 551 EADTVGCCSLKFEHVTLRPPNTVVFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 610
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 611 DEIFDRLTTSALNKHLSSYMPGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 670
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N+EVAI+CNH+RTV+ H+ QM +L+++I+ L K +K + +DLD + KKG
Sbjct: 671 NREVAILCNHKRTVAAGHANQMEKLSDRIKGLQYQKWRIKQMILDLDPKMKKKKGAAYFE 730
Query: 854 KDSDG-----KRKRNLAPEALERKM--------------AQTNAKIEKMERDMKTKEDLK 894
D D K + E L +K+ + K +++E +K ++L+
Sbjct: 731 LDDDLDMEWIKEHQAFLAEELRQKIRKKFDKENEKRAADGEKEMKAKELEERLKAADELE 790
Query: 895 -------------------TVALGTSKINYLDPRI------------------------- 910
TV +I+ +D RI
Sbjct: 791 AKYKKENKTKKVEAEGRGPTVEKFEGQISKIDQRIENMLLQAEDKENNKEVALGTSKLNY 850
Query: 911 -----TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+ VPIEK F+K++ KF WA+ VD ++ F
Sbjct: 851 IDPRLTVVFSKKFNVPIEKFFSKTMREKFDWAIKSVDEDWEF 892
>gi|363540711|ref|YP_004894910.1| mg859 gene product [Megavirus chiliensis]
gi|448825862|ref|YP_007418793.1| DNA topoisomerase 1b [Megavirus lba]
gi|350611876|gb|AEQ33320.1| DNA topoisomerase 1b [Megavirus chiliensis]
gi|425701804|gb|AFX92966.1| DNA topoisomerase 1b [Megavirus courdo11]
gi|444237047|gb|AGD92817.1| DNA topoisomerase 1b [Megavirus lba]
Length = 543
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/574 (42%), Positives = 356/574 (62%), Gaps = 38/574 (6%)
Query: 380 VIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEE 439
+I N + +L G +KKWTTL HNGV+FPP Y+ H V ++Y+G+E+ L + EE
Sbjct: 1 MINNHTLVANYLLLQQFGGAKKKWTTLEHNGVLFPPEYVKHNVPVIYRGQEIVLDIDSEE 60
Query: 440 VATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKK 499
+AT++A +++DY++ F NFWNDWR++LG +H+IQNLE DF IY++ +Q+E+KK
Sbjct: 61 IATLYAKYIESDYVKSKTFNRNFWNDWRQILGPDHIIQNLEDVDFGLIYEYLLQQREEKK 120
Query: 500 QMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 559
++ KEE+ + A VDG + VGNFR+EPPG+F GRG +PK G +K+RI
Sbjct: 121 LNPINKELKEKEEEKYKY-----AYVDGKMQPVGNFRIEPPGIFLGRGCNPKSGLVKRRI 175
Query: 560 QPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 619
P DI INIG + +P+ P+PG W++V HD TV WLA + D I K KYV+L A S
Sbjct: 176 YPEDIIINIGVEARVPD-PLPGHEWRDVIHDKTVEWLASYKDDITGK-IKYVWLGAQSDF 233
Query: 620 KGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDD 679
K SD K++ ARKLK I SIR + S D RQIA A Y IDK ALR GNEK +
Sbjct: 234 KANSDINKFDLARKLKRRIKSIRKQNEEAMNSNDIYTRQIATALYFIDKFALRVGNEKGE 293
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN 739
DE DTVG +L+V +++ + +K++ DFLGKDS++Y T+EV+ VYK I +F GKK+
Sbjct: 294 DETDTVGVTSLRVEHIDLLNNDKIRLDFLGKDSVRYDRTLEVDPLVYKNIQEFMEGKKKG 353
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-------VAVK 792
D LFD + +N +L+ M LTAKVFRTYNAS LNK T D + +
Sbjct: 354 DQLFDLITPTDVNKYLQSFMKNLTAKVFRTYNASDLFQKELNKITKKYDKYEEIDKINIL 413
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL 852
+D + +AN +VA++CNHQ+ ++K+ + Q+ ++ E I+
Sbjct: 414 LDDFNKANAKVAMLCNHQKNITKSTNQQLKKIDEMIK----------------------- 450
Query: 853 MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
K D RK A + + +A+ + +++++ K +LK ++LGTSKINY+DPRITV
Sbjct: 451 -KSQDKLRKARKAKKKNPQSIARMESVVKRLKSKKSLKTELKNISLGTSKINYIDPRITV 509
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
A+ K+H +P++K+F+K+L KF WAMD+D F F
Sbjct: 510 AFMKKHNLPVDKLFSKTLQDKFKWAMDIDENFEF 543
>gi|195433288|ref|XP_002064647.1| GK23720 [Drosophila willistoni]
gi|194160732|gb|EDW75633.1| GK23720 [Drosophila willistoni]
Length = 638
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/571 (44%), Positives = 350/571 (61%), Gaps = 39/571 (6%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
DG K W TL H G +F PY LP V+ LY GK L+ E EE AT +A ML+ + +
Sbjct: 75 NDGNK-WLTLEHKGPVFTEPYKRLPANVRFLYDGKPFQLSKETEEAATFYAKMLNHECCR 133
Query: 455 KPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
F NF+ D+R + + +I++ C+F I+ + Q + K+ + EEK A +++
Sbjct: 134 NRIFYRNFFRDFRLTMTARERKIIKDFHKCNFYEIFKFFQAESNKRLAATKEEKLAKRKK 193
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
KY + +VDG +E++ NFR+EPPGLFRGRG+HPKMG +K+R+Q DI IN G+D
Sbjct: 194 NEAFVNKYGFCLVDGHRERISNFRLEPPGLFRGRGDHPKMGMIKRRVQACDIIINCGRDS 253
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
IP P G+ WKEV+HDNTVTWLA W D + + KY+ L + S ++ +SD KYE AR
Sbjct: 254 KIP-MPPRGQMWKEVRHDNTVTWLASWVDNVQGQS-KYIILNSWSKIRCESDHNKYETAR 311
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
+L +I IRA Y +++ S+D RQ AVA Y IDKLALR GNEK+ D+ADTVGCC+L+V
Sbjct: 312 RLHKFIDKIRATYREEWKSKDIFVRQRAVALYFIDKLALRVGNEKEKDQADTVGCCSLRV 371
Query: 693 GNVECI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+V+ + FDFLGKDSI+Y TVEVE V+ + F K ++ +FD L+
Sbjct: 372 EHVQLHRRLMDKEYVVAFDFLGKDSIRYYKTVEVEPRVFNNLKLFVKDKGKSYYVFDCLN 431
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAII 806
+LN HLK LM GLT KVFRTYNAS+TL L++ T + VA K+ VY RAN+ VAI+
Sbjct: 432 AHELNDHLKNLMIGLTTKVFRTYNASLTLQNQLDELTDEEATVAEKLLVYNRANRAVAIL 491
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAP 866
CNHQR++ K H M L +KI + + DL + + + KR L+
Sbjct: 492 CNHQRSIPKGHQQIMENLRKKIHNKSNAINDLEAEFN-------------ELKRSATLSG 538
Query: 867 EALERKMAQTNAKIEKMER----------DMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
A ++K+A+ K ++ER + +E+ K VAL TSK+NY+DPRI+VAWCK
Sbjct: 539 TAKDKKIAECKGK--QLERLKDQLKKLKLEETNREENKCVALTTSKLNYIDPRISVAWCK 596
Query: 917 RHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
++ VPIEKIFNK+ KF WA+ + D + F
Sbjct: 597 KNNVPIEKIFNKTQRTKFLWAIHMADENYHF 627
>gi|326476352|gb|EGE00362.1| topoisomerase I [Trichophyton tonsurans CBS 112818]
Length = 878
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/628 (43%), Positives = 371/628 (59%), Gaps = 77/628 (12%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VK+ Y G V L P+ EEVA+ F ML++
Sbjct: 253 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKLKYAGVPVTLHPDAEEVASHFGTMLNST 312
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK I+ CDF+ I++ +++ + +KK
Sbjct: 313 HNVENPIFQKNFFNDFQAIIKKTGGAKDPQGKPIQIKEFSKCDFRTIFEHYEKLRAEKKA 372
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKKA K EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G +K R+
Sbjct: 373 MSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGTVKTRVM 432
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 433 PEQITINIGKDAPVP-APPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 490
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 491 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 550
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 551 EADTVGCCSLKFEHVTLRPPNTVVFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 610
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 611 DEIFDRLTTSALNKHLSSYMPGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 670
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N+EVAI+CNH+RTV+ H+ QM +L+++I+ L K +K + +DLD + KKG
Sbjct: 671 NREVAILCNHKRTVAAGHANQMEKLSDRIKGLQYQKWRIKQMILDLDPKMKKKKGAAYFE 730
Query: 854 KDSDG-----KRKRNLAPEALERKM--------------AQTNAKIEKMERDMKTKEDLK 894
D D K + E L +K+ + K +++E +K ++L+
Sbjct: 731 LDDDLDMEWIKEHQAFLAEELRQKIRKKFDKENEKRAADGEKEMKAKELEERLKAADELE 790
Query: 895 -------------------TVALGTSKINYLDPRI----------------TVAWCKRHE 919
TV +I+ +D RI + K
Sbjct: 791 AKYKKENKTKKVEAEGRGPTVEKFEGQISKIDQRIENMLLQAEDKENNKEVALGTSKLFN 850
Query: 920 VPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
VPIEK F+K++ KF WA+ VD ++ F
Sbjct: 851 VPIEKFFSKTMREKFDWAIKSVDEDWEF 878
>gi|334188421|ref|NP_001190544.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|332009231|gb|AED96614.1| DNA topoisomerase 1 [Arabidopsis thaliana]
Length = 564
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/266 (81%), Positives = 240/266 (90%), Gaps = 1/266 (0%)
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND 740
EADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + D
Sbjct: 297 EADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTD 356
Query: 741 DLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRAN 800
DLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI VYQ+AN
Sbjct: 357 DLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKAN 416
Query: 801 KEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
KEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL + SDGK+
Sbjct: 417 KEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDGKK 475
Query: 861 KRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEV
Sbjct: 476 IRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 535
Query: 921 PIEKIFNKSLLAKFAWAMDVDPEFRF 946
PIEKIF KSLL KFAWAMDV+PE+RF
Sbjct: 536 PIEKIFTKSLLEKFAWAMDVEPEYRF 561
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 127/234 (54%), Gaps = 20/234 (8%)
Query: 129 AKASPSK--SPMRSPVKSP---VRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEE 183
+KA P+ SPMRSPV SP S S V +S SS +SP N + K+
Sbjct: 46 SKAVPTTKVSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSPLRNDMPSTVKDR 105
Query: 184 I---KDGNGLKSDDNDSEDDKPLSARLKGN-----SKNVN--QGIGASKADAAISEVNVK 233
KD + K + DSEDD+PLS+ L GN S+ V+ Q + D + + +
Sbjct: 106 SQLQKDQSECKIEHEDSEDDRPLSSILSGNKGPTSSRQVSSPQPEKKNNGDRPLDRAS-R 164
Query: 234 TDPEDSDDEVPLSSRFPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVP 292
++SDDE P+SS F K ++G SG + +DEKKPL K+ QNGST + + + V
Sbjct: 165 IIKDESDDETPISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTVK-NEVPNGKVL 223
Query: 293 VKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMK 346
KRPL+K SS+ SS KK K+S + VK+KQ +VK K+ DD + +S +MK
Sbjct: 224 GKRPLEKNSSADQSSLKKAKISASPTSVKMKQDSVK--KEIDDKGRVLVSPKMK 275
>gi|302661284|ref|XP_003022311.1| hypothetical protein TRV_03522 [Trichophyton verrucosum HKI 0517]
gi|291186251|gb|EFE41693.1| hypothetical protein TRV_03522 [Trichophyton verrucosum HKI 0517]
Length = 919
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/642 (42%), Positives = 374/642 (58%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VK+ Y G V L P+ EEVA+ F ML++
Sbjct: 280 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKLKYAGVPVTLRPDAEEVASHFGTMLNST 339
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK I+ CDF+ I++ +++ + +KK
Sbjct: 340 HNVENPIFQKNFFNDFQAIIKKTGGAKDPQGKPIQIKEFSKCDFRTIFEHYEKLRAEKKA 399
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKKA K EK+ E YM+ + DG K+KVGNFR+EPP LFRGRGEHPK G +K R+
Sbjct: 400 MSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKVGNFRIEPPALFRGRGEHPKTGTVKTRVM 459
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 460 PEQITINIGKDAPVP-APPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 517
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 518 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 577
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 578 EADTVGCCSLKFEHVTLKPPNTVVFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 637
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 638 DEIFDRLTTSALNKHLSSYMPGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 697
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N+EVAI+CNH+RTV+ H+ QM +L+++I+ L K +K + +DLD + KKG
Sbjct: 698 NREVAILCNHKRTVAAGHANQMEKLSDRIKGLQYQKWRIKQMILDLDSSMKKKKGAAYFE 757
Query: 854 KDSDG-----KRKRNLAPEALERKM--------------AQTNAKIEKMERDMKTKEDLK 894
D D K + E L +K+ + K +++E +K ++L+
Sbjct: 758 LDEDLDMEWIKEHQAFLAEELRQKIRKKFDKENEKRAADGEKEMKAKELEERLKAADELE 817
Query: 895 -------------------TVALGTSKINYLDPRI------------------------- 910
TV +I+ +D RI
Sbjct: 818 AKYKKENKTKKVEAEGRGPTVEKFEGQISKIDQRIENMLLQAEDKENNKEVALGTSKLNY 877
Query: 911 -----TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+ VPIEK F+K++ KF WA+ VD ++ F
Sbjct: 878 IDPRLTVVFSKKFNVPIEKFFSKTMREKFDWAIKSVDEDWEF 919
>gi|156844437|ref|XP_001645281.1| hypothetical protein Kpol_1037p19 [Vanderwaltozyma polyspora DSM
70294]
gi|156115941|gb|EDO17423.1| hypothetical protein Kpol_1037p19 [Vanderwaltozyma polyspora DSM
70294]
Length = 799
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/444 (51%), Positives = 307/444 (69%), Gaps = 11/444 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
+G+ +WTTL HNGV+FPPPY LP +K+ Y G+ V+L P EEVA FA +L TD+ +
Sbjct: 170 NGEIQWTTLRHNGVMFPPPYVSLPSHIKLYYNGQAVDLPPTAEEVAGFFAALLHTDHAKN 229
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
F++NF+ D++++L + N + ++ E CDF ++++ + Q+E++K++S +EKK L
Sbjct: 230 TVFQKNFFTDFKEVLKEVGGTLNGIKLEKFEYCDFSKMHEYFEIQREQRKKLSPQEKKQL 289
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ EK +QEE + + +DG +E+VGNFRVEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 290 RLEKEEQEEPFKFCELDGRREQVGNFRVEPPDLFRGRGAHPKTGKLKRRVYPEDIVLNLD 349
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
++ PIP P G W E+KHDNTV WLA W + I+ FKYV LAA+SSLKGQSD +K+E
Sbjct: 350 RNAPIPAVP-EGHKWGEIKHDNTVQWLAMWRENIS-NSFKYVRLAANSSLKGQSDFKKFE 407
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI SIR Y + S+ RQ AVA YLID ALRAG EK DDEADTVGCC+
Sbjct: 408 KARELKKYIDSIRKDYRTNLKSKLMLERQKAVAIYLIDVFALRAGGEKSDDEADTVGCCS 467
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KK D LFD+LD
Sbjct: 468 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLAIFKRAPKKPGDQLFDRLDP 527
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL+ MPGLTAKVFRTYNAS T+ L+ G VA K+ Y AN+ VAI+CN
Sbjct: 528 PILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIVNKGSVAEKMLRYNAANRTVAILCN 587
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLK 832
HQR+V K H+ + + EKIE+L+
Sbjct: 588 HQRSVGKGHAEAVRKANEKIEELE 611
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE+ + + +I+ +K KE+ V+LGTSKINY+DPR++V +CK+ ++PIEKIF
Sbjct: 719 EKLEKNIEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFCKKFDIPIEKIF 778
Query: 927 NKSLLAKFAWAMD-VDPEFRF 946
KSL KF WA++ VD +RF
Sbjct: 779 TKSLREKFRWAIESVDENWRF 799
>gi|452001558|gb|EMD94017.1| hypothetical protein COCHEDRAFT_1222620 [Cochliobolus
heterostrophus C5]
Length = 903
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 297/735 (40%), Positives = 412/735 (56%), Gaps = 66/735 (8%)
Query: 161 SPLDDRLKQ--SPQHNALAVVKKE---EIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVN 215
P+DD +P+ N A K++ + +G K N +DDKPL+ R + +
Sbjct: 50 GPIDDSKMDVDAPETNGNANGKRKARTSVANGKSYKDASNSEDDDKPLNKR-----RRTS 104
Query: 216 QGIGASKADAAISEVNVKTDPEDSDDEVPLSSR-FPKSNAGTSGAKPIDSDEKKPLASKV 274
Q K D +D E SD VPL +R PK++A G + DSD PLA+K+
Sbjct: 105 QQAKPVKDD---------SDSELSD--VPLKARVLPKASAEQIG-ESADSD--VPLATKL 150
Query: 275 -QQNGSTSRETQQKSSSVPVKR---PLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVE 330
++ S + +++ ++ K P +K + S P + K V
Sbjct: 151 TKKKESIEKAAAKEAKAIRTKEKAPPKRKQKAESDSEDDVPLAKKKAPVKKANGV----- 205
Query: 331 KKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKST 390
KK + D P++++ K + AK V + + + + +
Sbjct: 206 KKEESDSDAPLAKKSAPKNTKAKAAAAAPAKGKGKVKKEIEEDQEAEDEEDEYRWWEDPG 265
Query: 391 KMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML 448
K DG +KW TL H+GV+FPP Y LP VK++Y G V L + EEVAT + ML
Sbjct: 266 K-----SDGTRKWETLEHSGVVFPPEYEPLPKHVKLVYDGVPVTLHKDAEEVATFYGSML 320
Query: 449 DTDY-MQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEK 497
++ + ++ P F +NF+ D+ +L K N V I+ E CDFKPI++W ++ K
Sbjct: 321 NSTHNVENPTFNKNFFEDFTAILDKTGHGKDKNGNTVKIKKFEKCDFKPIFEWFDSERAK 380
Query: 498 KKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 557
KK +S+ EKKALK E+ E YM+ + DG K+KVGNFRVEPPGLFRGRGEHPK G++KK
Sbjct: 381 KKALSAAEKKALKAEREAAEAPYMYCMWDGRKQKVGNFRVEPPGLFRGRGEHPKTGRVKK 440
Query: 558 RIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS 617
R+ P ITINIG+ +PE P G WKEVKHD+ TWLA W + IN +KYV LAA+S
Sbjct: 441 RVMPEQITINIGEKAKVPEPPA-GHRWKEVKHDHEGTWLAMWQENINGA-YKYVMLAANS 498
Query: 618 SLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK 677
+KGQSD +K+EKAR+LK +I IR Y KD S+ RQ A A YLID+ ALRAGNEK
Sbjct: 499 DIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQRATAIYLIDQFALRAGNEK 558
Query: 678 DDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-K 736
+DEADTVGCC+LK ++ PP + FDFLGKDSI++ + V+V+ V+K + F+ K
Sbjct: 559 GEDEADTVGCCSLKFQHITLRPPETVIFDFLGKDSIRFYDEVKVDPQVFKNLKLFKKEPK 618
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVY 796
DD+FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L + G + K+ Y
Sbjct: 619 TTGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNASYTMARLLKEMKPTGTIQEKVKAY 678
Query: 797 QRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS 856
AN+EVAI+CNH+RTV+ H+ + ++TEKI LR + R K +M D
Sbjct: 679 NDANREVAILCNHKRTVAANHANSIEKMTEKI-------NGLRYQVWRTKM----MMIDV 727
Query: 857 DGKRKRNLAPEALER 871
D K K+ E ER
Sbjct: 728 DPKIKKKKGAEFFER 742
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +IE M+ M+ KE K VALGTSKINY+DPR+TV + K+ +VPIE+ F
Sbjct: 823 EKLEGNIDKLHQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTVVFSKKFDVPIERFF 882
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K+L KF WA+ VD + F
Sbjct: 883 SKTLREKFDWAIKSVDENWEF 903
>gi|399217729|emb|CCF74616.1| unnamed protein product [Babesia microti strain RI]
Length = 706
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/581 (45%), Positives = 355/581 (61%), Gaps = 57/581 (9%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
+ + KW L H G+ F Y PHG+ +L+ GKE+ L E EE+ATM+ L T+Y KP
Sbjct: 131 ESELKWNYLEHRGLQFAELYEPHGISILFNGKELKLNSEAEEIATMWCTTLGTEYENKPI 190
Query: 458 FRENFWNDWRKLLGKNHVIQN--LEGCDFKPIYDWHQEQK-------EKKKQMSSEEKKA 508
FR+NFW ++ H I+ LE CDF I ++ +K E ++ EK+A
Sbjct: 191 FRKNFWKTFKSKFPTLHPIKKAKLESCDFTAIKNYLDNKKLKAAQDLENDRESVLAEKEA 250
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
LK K + E + +A+VD ++EKV F+VEPPGLFRGRGEHPK G K+RI P+D+ INI
Sbjct: 251 LKRAKKELELPFTYALVDNIREKVSGFKVEPPGLFRGRGEHPKQGLWKQRIIPTDVKINI 310
Query: 569 GKDVPIPEC--PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
K P+P+ P+ G W +V H+N++TWLA++ D I + KY++L+A S KG +D
Sbjct: 311 AKTAPVPKAIYPLNGYCWNDVVHENSLTWLAYYKDTIQD-QIKYMYLSAQSKFKGLNDFL 369
Query: 627 KYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTV 685
KYEKAR+LK I +IR Y + S D +Q+ ATYLID LALR G+EKD D+EADTV
Sbjct: 370 KYEKARRLKTCITNIRDGYRQKLRSDDLVDKQLGTATYLIDFLALRVGSEKDTDEEADTV 429
Query: 686 GCCTLKVGNVECIPPNKL----KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDD 741
GCC+L+ VE I +KL DFLGKDSI+Y N+V+V+ + + +F KK ++D
Sbjct: 430 GCCSLR---VEHITFDKLTDTINLDFLGKDSIRYTNSVKVDHYAFTNLMEFCKDKKPDED 486
Query: 742 LFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN-------------KGTGD-- 786
+FDK+ TAKLN +LKEL+PGL+AKVFRTYNAS TL+ L+ K G+
Sbjct: 487 IFDKISTAKLNDYLKELLPGLSAKVFRTYNASATLEACLDLLKLEEGTLVATVKDEGNEV 546
Query: 787 -----GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR--LTEKI--EDLKGVLKD 837
G V + Y AN+ VAI+CNHQRTV K H A + L E I EDLK + KD
Sbjct: 547 LSVNCGSVDELLHYYNHANRRVAILCNHQRTVPKLHQATQKKMMLKENILEEDLK-MCKD 605
Query: 838 LRVDLDRAKK---GKPPLMKDSDGKRKRNLAP-------EALERKMAQTNAKIEKMERDM 887
L+ K P + D G ++ AP EALE+K+ I K++ +
Sbjct: 606 YIKHLNEGSKKSFCMTPKLNDLKGNPRK--APFKEGAKVEALEKKVENIKKNISKLKLKI 663
Query: 888 KTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
K +D KTVALGTSKINY+DPRIT+A+CK+ E+PIEK+FN+
Sbjct: 664 KIHDDNKTVALGTSKINYMDPRITIAFCKKFEIPIEKVFNR 704
>gi|221045214|dbj|BAH14284.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/515 (47%), Positives = 328/515 (63%), Gaps = 27/515 (5%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 RDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR T M L KI+ K + + ++ + D
Sbjct: 359 RANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKK---EQVAEARAELRRARAEHKAQGD 415
Query: 858 GK-----RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
GK K+ E L+ ++AQ + + KE+ K VALGTSK+NYLDPRI++
Sbjct: 416 GKSRSVLEKKRWLLEKLQEQLAQLSVQ-------ATDKEENKQVALGTSKLNYLDPRISI 468
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
AWCKR VP+EKI++K+ +FAWA+ + E F F
Sbjct: 469 AWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 503
>gi|327296986|ref|XP_003233187.1| topoisomerase I [Trichophyton rubrum CBS 118892]
gi|326464493|gb|EGD89946.1| topoisomerase I [Trichophyton rubrum CBS 118892]
Length = 892
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 273/642 (42%), Positives = 373/642 (58%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VK+ Y G V L P+ EEVA+ F ML++
Sbjct: 253 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKLKYAGVPVTLHPDAEEVASHFGTMLNST 312
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK I+ CDF+ I++ +++ + +KK
Sbjct: 313 HNVENPIFQKNFFNDFQAIIKKTGGAKDPQGKPIQIKEFSKCDFRTIFEHYEKLRAEKKA 372
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKKA K EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G +K R+
Sbjct: 373 MSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGTVKTRVM 432
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 433 PEQITINIGKDAPVP-APPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 490
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 491 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 550
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 551 EADTVGCCSLKFEHVTLKPPNTVVFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 610
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 611 DEIFDRLTTSALNKHLSSYMPGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 670
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N+EVAI+CNH+RTV+ H+ QM +L+++I+ L K +K + + LD + KKG
Sbjct: 671 NREVAILCNHKRTVAAGHADQMEKLSDRIKGLQYQKWRIKQMILALDPKIKKKKGAAYFE 730
Query: 854 KDSDG-----KRKRNLAPEALERKM--------------AQTNAKIEKMERDMKTKEDLK 894
D D K + E L +K+ + K +++E +K ++L+
Sbjct: 731 LDEDLDMEWIKEHQAFLAEELRQKIRKKFDKENEKRAADGEKEMKAKELEERLKAADELE 790
Query: 895 -------------------TVALGTSKINYLDPRI------------------------- 910
TV +I+ +D RI
Sbjct: 791 AKYKRENKTKKVEAEGRGPTVEKFEGQISKIDQRIENMLLQAEDKENNKEVALGTSKLNY 850
Query: 911 -----TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+ VPIEK F+K++ KF WA+ VD ++ F
Sbjct: 851 IDPRLTVVFSKKFNVPIEKFFSKTMREKFDWAIKSVDEDWEF 892
>gi|448534130|ref|XP_003870756.1| Top1 DNA topoisomerase I [Candida orthopsilosis Co 90-125]
gi|380355111|emb|CCG24628.1| Top1 DNA topoisomerase I [Candida orthopsilosis]
Length = 805
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/632 (42%), Positives = 373/632 (59%), Gaps = 82/632 (12%)
Query: 395 GSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY 452
G DG+ KW +L HNGV+FPPPY LP VK+ Y GK VNL E EEVA F M++TD+
Sbjct: 176 GDNDGEIKWQSLEHNGVMFPPPYEPLPSHVKLYYDGKPVNLPIEAEEVAGFFGAMVETDH 235
Query: 453 MQKPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
+ P F+ NF+ D++++L G I + DF ++ + ++++E+KK +S +EKK
Sbjct: 236 AKNPVFQNNFFQDFQQVLKECGGCGVEITDFNKLDFSKMHAYFEKKREEKKALSKDEKKR 295
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
LKEEK K EE Y +++G +E VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+
Sbjct: 296 LKEEKEKIEEPYKTCLLNGRRELVGNFRIEPPGLFRGRGAHPKTGKLKRRVYPEQVTLNL 355
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
+P+ P PG +W EV+HDN VTWLA W + I FKYV AA+SS+KGQSD +K+
Sbjct: 356 SAHAKVPDPP-PGHNWAEVRHDNEVTWLAMWKENI-ADSFKYVRFAANSSVKGQSDFKKF 413
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
E AR+L+ Y+ +IR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC
Sbjct: 414 ETARELRKYVDAIRKDYTKMLKSEKMQDRQMATAMYLIDVYALRAGGEKGEDEADTVGCC 473
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLD 747
+L+ ++ PPN + FDFLGKDSI++ VEV V+K + F+ KQ D+LFD+++
Sbjct: 474 SLRFEHITLKPPNTVIFDFLGKDSIRFYQEVEVSKQVFKNLRIFKKEPKQPGDNLFDRIN 533
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIIC 807
+ +N L+ M GLTAKVFRTYNAS T+ L+ + +G VA K+ + AN+ VAI+C
Sbjct: 534 PSMVNKQLQNYMKGLTAKVFRTYNASKTMQDQLDLISNEGTVAEKVVKFNAANRTVAILC 593
Query: 808 NHQRTVSKTHSAQMSRLT--------------------------------EKIEDL---- 831
NHQRTVSK H + +++ E+++DL
Sbjct: 594 NHQRTVSKNHGNSIQKISDKLKELTWQKIRTKKMLLQLDPKLKKKDPKYFEELDDLVKED 653
Query: 832 -------------KGVLKDLRVDLDRAKKGKPPLMK--------------DSDGKRKRNL 864
+ LK L D ++ K K PL+ + + K++
Sbjct: 654 IEHIHHSIIERQKQQALKKLERDNEKLKIEKKPLLTKKDIKDKLDKIHELEKEYKKELKT 713
Query: 865 APEALERKMA--QTNAKIEKMER-------DMKTKEDLKTVALGTSKINYLDPRITVAWC 915
L KM + +IE +E +K KED V+LGTSK+NY+DPR+TV +
Sbjct: 714 GKPELPAKMTLEKCYQQIETLENRIVATSLQLKDKEDNSEVSLGTSKMNYIDPRLTVMFS 773
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+ +VPIE++F K+L KF WA++ D +RF
Sbjct: 774 KKFDVPIERLFTKTLREKFKWAIESADENWRF 805
>gi|62321045|dbj|BAD94115.1| DNA topoisomerase I [Arabidopsis thaliana]
Length = 270
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/268 (81%), Positives = 242/268 (90%), Gaps = 1/268 (0%)
Query: 679 DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
D+EADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK +
Sbjct: 1 DNEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSK 60
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQR 798
DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI VYQ+
Sbjct: 61 TDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQK 120
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDG 858
ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL + SDG
Sbjct: 121 ANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDG 179
Query: 859 KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
K+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRH
Sbjct: 180 KKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRH 239
Query: 919 EVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
EVPIEKIF KSLL KFAWAMDV+PE+RF
Sbjct: 240 EVPIEKIFTKSLLEKFAWAMDVEPEYRF 267
>gi|392594024|gb|EIW83349.1| hypothetical protein CONPUDRAFT_164310 [Coniophora puteana
RWD-64-598 SS2]
Length = 828
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/447 (52%), Positives = 296/447 (66%), Gaps = 27/447 (6%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
SGDG++KW TL HNGVIFPPPY LP VKM YKGKEV LTPE EEVA + ML+TD+
Sbjct: 228 SGDGEEKWQTLEHNGVIFPPPYESLPSNVKMKYKGKEVVLTPEAEEVAGFYGAMLETDHA 287
Query: 454 QKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
Q F +NF+ D+ K+L D+ P + + KK +K++K
Sbjct: 288 QDATFNKNFFTDFLKVL-----------ADYPP-----------RNGVRHGAKKEIKKQK 325
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ EEKY ++DG KEKVGNFRVEPPGLFRGRG+HPK G LK R++P DITINIG VP
Sbjct: 326 DALEEKYTSCVLDGRKEKVGNFRVEPPGLFRGRGDHPKKGALKLRVRPEDITINIGAGVP 385
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
P +PG+ WK+V HD TVTWLA W + +N +KYVFLAA S LKGQSD K+EKAR+
Sbjct: 386 TPVPNMPGQ-WKQVVHDKTVTWLANWVENVN-GNYKYVFLAAGSLLKGQSDMAKFEKARE 443
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
LK ++ IR+ YT D S+ RQ A A Y ID++ALRAGNEK +DEADTVGCC+L+
Sbjct: 444 LKKHVDRIRSDYTADLKSKVMADRQRATAMYFIDRVALRAGNEKGEDEADTVGCCSLRCE 503
Query: 694 NVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNA 753
+V PN + FDFLGKDSI+Y N V V+ V+K I F+ K +D+LFD+++T+ LN
Sbjct: 504 HVTLEAPNFIIFDFLGKDSIRYYNRVTVDQQVFKNIRLFKDNKDDSDNLFDRVNTSLLNK 563
Query: 754 HLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICNHQRT 812
HL M GLTAKVFRTYNASIT L++GT + V K++ Y AN+ VAI+CNHQR+
Sbjct: 564 HLASYMKGLTAKVFRTYNASITFQQQLDEGTPEMATVQEKLNAYNHANRMVAILCNHQRS 623
Query: 813 VSKTHSAQMSRLTEKIEDLKGVLKDLR 839
KTH M ++ E++ K LR
Sbjct: 624 APKTHEQSMEKMRERLRGFKYDWMKLR 650
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 861 KRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
KR+ PE LE + + KI+ + M +E K VALGTSKINYLDPRIT AWCK HEV
Sbjct: 743 KRDRPPEKLEEAVQKLGEKIKTFKLQMDDREAGKEVALGTSKINYLDPRITAAWCKTHEV 802
Query: 921 PIEKIFNKSLLAKFAWAMDVDPEFRF 946
PIEKIF+K+LL KF WAM+ D +++F
Sbjct: 803 PIEKIFSKTLLTKFPWAMEADDDWKF 828
>gi|444320461|ref|XP_004180887.1| hypothetical protein TBLA_0E03140 [Tetrapisispora blattae CBS 6284]
gi|387513930|emb|CCH61368.1| hypothetical protein TBLA_0E03140 [Tetrapisispora blattae CBS 6284]
Length = 879
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/456 (51%), Positives = 311/456 (68%), Gaps = 19/456 (4%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGVIFPP Y LP VK+ Y GK V+L P EEVA +A +L+TD+ +
Sbjct: 250 DDTIKWTTLSHNGVIFPPDYEPLPSHVKLYYDGKPVDLPPSSEEVAGFYAALLETDHGKN 309
Query: 456 PKFRENFWNDWRKLL-----GKNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L +N++ I+ E CDF +YD+ + +K++KK +SS+EKK +
Sbjct: 310 PVFQKNFFNDFLQVLKEAGGTRNNIKIKKFELCDFTKMYDYFELKKQEKKALSSQEKKQI 369
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K +K K EE Y + ++DG KE+VGNF++EPP LFRGRG HPK GKLK+R+ P D+ +N+
Sbjct: 370 KLDKEKFEEPYKFCMLDGRKEQVGNFKIEPPDLFRGRGAHPKTGKLKRRVFPEDVVLNLD 429
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PE P G W E++HDNTV WLA W + I+ FKYV LAA+SSLKGQ+D +K+E
Sbjct: 430 KDSKTPEPP-EGHQWGEIRHDNTVQWLAMWRENIS-NSFKYVRLAANSSLKGQNDLKKFE 487
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK +I +IR Y K+ S+ RQ AVA YLID ALRAG EK DDEADTVGCC+
Sbjct: 488 KARQLKSHIDNIRKDYRKNLKSKVMLDRQKAVAIYLIDVFALRAGGEKSDDEADTVGCCS 547
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ ++ PP + FDFLGKDSI+Y VEV+ V+K + F+ KQ D LFD+LD
Sbjct: 548 LRYEHITLKPPQTVVFDFLGKDSIRYYQEVEVDKQVFKDLTIFKRPPKQPGDQLFDRLDP 607
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G +A KI Y AN+ VAI+CN
Sbjct: 608 SILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTIAEKILKYNAANRTVAILCN 667
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL--------KGVLK 836
HQR+V K H+ + + EKI +L KG+L+
Sbjct: 668 HQRSVGKNHAVSVQKSGEKIRELEWEKIRLKKGILQ 703
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 8/77 (10%)
Query: 878 AKIEKMERDMKT-------KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
A+IEK E ++T KED V+LGTSK+NY+DPR+TV +CK++ VPIEK+F K+L
Sbjct: 803 AQIEKFENRIQTRSVQLKDKEDNSQVSLGTSKLNYIDPRLTVVFCKKYGVPIEKLFTKTL 862
Query: 931 LAKFAWAMD-VDPEFRF 946
KF WA++ VD ++F
Sbjct: 863 RDKFQWAIESVDENWKF 879
>gi|340506252|gb|EGR32433.1| hypothetical protein IMG5_083110 [Ichthyophthirius multifiliis]
Length = 675
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/563 (43%), Positives = 349/563 (61%), Gaps = 22/563 (3%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW L H+GV+FP + H +K++Y K ++LT QEE+AT ++ L TD+ KP +R+N
Sbjct: 117 KWKYLEHHGVLFPDYWKKHNIKIMYDNKPIDLTLYQEEMATYWSQTLGTDWENKPCYRDN 176
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYM 521
F + + ++ + +F PI + + QKE +K S EEKK+ K+ K++ Y
Sbjct: 177 FSKQFLTTFSEKNM--DFNKFNFWPIKEHLEAQKEIRKNRSKEEKKSEKDRKDQLANFYA 234
Query: 522 WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPG 581
AI+D +EKVG + +EPP LF+GRGEHPKMG +K RIQP + INI KD PIP+C + G
Sbjct: 235 GAILDFYREKVGQYMIEPPTLFKGRGEHPKMGLMKGRIQPEAVVINIAKDAPIPKCIVAG 294
Query: 582 ESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSI 641
+W ++ H VTWLA + D K+ KY FL+A S LK ++D++KYEKARKLK+ I I
Sbjct: 295 HAWGDIVHKQDVTWLASYKDNSVKKQHKYFFLSAESRLKAENDKKKYEKARKLKNVIGQI 354
Query: 642 RAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPN 701
R Y S + RQ+ ATYLIDKLALR GNEK ++EADTVGCC+L++ +++ +
Sbjct: 355 RENYEMKLKSSNEVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRIEHIQVLDDC 414
Query: 702 KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPG 761
++ FDFLGKDS++Y NTV+V V+K I QF KK + +LFDK+D + LN +LK M G
Sbjct: 415 QISFDFLGKDSMRYQNTVKVNEIVWKNISQFIKNKKDDQNLFDKIDASSLNEYLKSQMKG 474
Query: 762 LTAKVFRTYNASITLDGMLNKGTGDG----DVAVKIDVYQRANKEVAIICNHQRTVSKTH 817
LTAKVFRTYNAS TL L+ D+ K++ Y AN+ VAI+CNHQ+TV K
Sbjct: 475 LTAKVFRTYNASHTLQKELDMAVSTKMNKMDLKEKLNFYDEANRNVAILCNHQKTVGKNF 534
Query: 818 SAQMSRLTEKIEDLKGVLKDLRVDLDRAKK-------GKPPLMKDSDGKRKRNLAPEALE 870
++R+ ++++ K K+L L++ KK + L + DGK K + +
Sbjct: 535 DQMLNRMEQRLKAYKDYEKELLDHLNKCKKKDVKEYEEETILEEREDGKHK--MLTKKFP 592
Query: 871 RKMAQTNAKIEKME-------RDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
+T +EK+ KE K +ALGTSK NY DPRI+V +CK+ +VPIE
Sbjct: 593 SSADKTQEALEKIRKKINEEKNKKDNKEKNKEIALGTSKTNYNDPRISVNFCKKWDVPIE 652
Query: 924 KIFNKSLLAKFAWAMDVDPEFRF 946
K+F ++L AKF WAM+ D ++ F
Sbjct: 653 KVFPRTLCAKFVWAMETDLDWNF 675
>gi|221046148|dbj|BAH14751.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 244/515 (47%), Positives = 328/515 (63%), Gaps = 27/515 (5%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF++DWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFSDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 RDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR T M L KI+ K + + ++ + D
Sbjct: 359 RANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKK---EQVAEARAELRRARAEHKAQGD 415
Query: 858 GK-----RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
GK K+ E L+ ++AQ + + KE+ K VALGTSK+NYLDPRI++
Sbjct: 416 GKSRSVLEKKRWLLEKLQEQLAQLSVQ-------ATDKEENKQVALGTSKLNYLDPRISI 468
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
AWCKR VP+EKI++K+ +FAWA+ + E F F
Sbjct: 469 AWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 503
>gi|219121233|ref|XP_002185844.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582693|gb|ACI65314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 594
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/573 (46%), Positives = 367/573 (64%), Gaps = 31/573 (5%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM-LDTDYMQKPK--- 457
+W T+ H+GV FP Y PHGVKM+Y G+ V LTP QEE AT FA M + ++ PK
Sbjct: 17 QWRTMEHSGVSFPETYEPHGVKMMYDGQPVELTPIQEEAATFFAAMDPEGMHLGNPKTGK 76
Query: 458 -FRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
F +NF+ D+R++LGK H+++ + CDF+PI EQK +K ++ EE+KA KE++++
Sbjct: 77 IFIKNFFADFREILGKKHIVKEFKKCDFEPIRKHLNEQKIIRKAITDEERKANKEDRSQT 136
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
++ ++IVDG E+VGNF +EPPG FRGRGEHPKMGKLK R+ P +++N+ + P+P
Sbjct: 137 LHQFGFSIVDGHIERVGNFNMEPPGAFRGRGEHPKMGKLKSRVLPEQVSLNLSECAPVPP 196
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
CP+PG +W +V+HD WLA W + IN + KY+ LAA SS KG+SDR KY KA L
Sbjct: 197 CPVPGHAWSDVRHDPRGQWLATWKENINNQS-KYMQLAAQSSFKGKSDRSKYSKAGLLCK 255
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNV 695
I IR +Y KD S+D +Q+A AT++ID+LALR G EKD D+EADTVGCC+L+V ++
Sbjct: 256 NIEKIRKSYKKDLKSKDMEVKQLATATWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHL 315
Query: 696 ECIP------PNKLKFDFLGKDSIQYVNTVE-----------VELPVYKAIGQFQTGKKQ 738
P +++ +FLGKDS+ + T++ + VY + F KK
Sbjct: 316 HFDPNGEGGDSKEIELEFLGKDSMLFKQTIDFGATLYNDSNGLGAQVYDNLKSFCKKKKS 375
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-----GTGDGDVAVKI 793
++++F ++ LN HLK+ M GL+AKVFRTYNAS TL L K + + K+
Sbjct: 376 SEEVFHVINPTMLNNHLKQFMDGLSAKVFRTYNASKTLQTELRKYEVSPAWRNLTASEKV 435
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
Y AN+EVAI+CNHQR+VSK Q+ +T K+ LK KDL+ L G+
Sbjct: 436 VEYNNANREVAILCNHQRSVSKAQETQLENITAKVGMLKKQKKDLKKILKLLTAGEAD-- 493
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
K K + + E + +K+ N KI KME D+K K+D K V+LGTSKINY+DPRI+VA
Sbjct: 494 KIPTKKSPQTMTDEQVVKKIEAWNGKISKMEMDLKHKDDNKEVSLGTSKINYMDPRISVA 553
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKR+EVPIEKIF+K+L KF WAM V P++ F
Sbjct: 554 WCKRNEVPIEKIFSKTLRDKFNWAMAVVPDWEF 586
>gi|365984679|ref|XP_003669172.1| hypothetical protein NDAI_0C02690 [Naumovozyma dairenensis CBS 421]
gi|343767940|emb|CCD23929.1| hypothetical protein NDAI_0C02690 [Naumovozyma dairenensis CBS 421]
Length = 780
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 278/632 (43%), Positives = 371/632 (58%), Gaps = 85/632 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPH--GVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGV+ PPPY P VK+ Y+GK V+L E EEVA F ML+TD+ +
Sbjct: 151 DDSIKWTTLKHNGVLLPPPYEPLPSHVKLYYEGKPVDLPLEAEEVAGFFGAMLETDHAKN 210
Query: 456 PKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ D+ +L +N I+ CDFK I+D++ Q+E +Q SS EKK +
Sbjct: 211 PTFQKNFFTDFLHVLEQNGGTKNGIEIKEFTKCDFKKIFDYYDLQREATRQKSSLEKKQI 270
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EEKY + +DG KE+VGNF+VEPPGLFRGRG HPK GKLK+R+QP DI +N+
Sbjct: 271 RLEREKAEEKYKFCELDGRKEQVGNFKVEPPGLFRGRGAHPKTGKLKRRVQPEDIVLNLS 330
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
+D PIPE P G W EV+HDNTV WLA W + I KYV LAA+SSLKGQ+D +K+E
Sbjct: 331 EDAPIPEAP-AGHQWGEVRHDNTVQWLAMWKENIF-NSLKYVRLAANSSLKGQNDLKKFE 388
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LKD+I +IR Y K ++ RQ A A YLID ALRAG EK ++EADTVGCC+
Sbjct: 389 KARQLKDHIDTIRKDYRKRLKNKFMLERQKATAIYLIDVFALRAGGEKSEEEADTVGCCS 448
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI+Y VEV+ V+K + F+ KQ LFD+LD
Sbjct: 449 LRYEHVTLKPPNTVIFDFLGKDSIRYYQQVEVDKQVFKDLTIFKRPPKQPGHQLFDRLDP 508
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+CN
Sbjct: 509 SILNKHLQSYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTVAEKLLRYNAANRTVAILCN 568
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKD--LRVDLDRAKKGKPPLMKDSDGKRKRN 863
HQRTV+K H+ + + KI++L K LK L++D KK K + D ++
Sbjct: 569 HQRTVTKGHAQSVEKANMKIKELEWQKIRLKRGLLQLDSSELKKNKAYFKELDDLSKEDE 628
Query: 864 LAPEA---------LERKMAQTNAK-----------------IEKME-------RDMKT- 889
+ A L +K A+ N K ++K+E +++KT
Sbjct: 629 ASIHAHIIERERDRLHKKFARENDKKKFMKEKELPESELKEWLDKVEEKKKQYAKELKTN 688
Query: 890 ----KEDLKTVALGTSKINYLDPRI------------------------------TVAWC 915
+ L TV ++I L+ RI VA+C
Sbjct: 689 VVELRSSLNTVEKIKAQIEKLEQRILTATIQLKDKEENSEVSLGTSKLNYIDPRLNVAFC 748
Query: 916 KRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K++ VPIEKIF K+L KF WA++ D +RF
Sbjct: 749 KKYNVPIEKIFTKTLRDKFKWAIESADENWRF 780
>gi|302511381|ref|XP_003017642.1| hypothetical protein ARB_04524 [Arthroderma benhamiae CBS 112371]
gi|291181213|gb|EFE36997.1| hypothetical protein ARB_04524 [Arthroderma benhamiae CBS 112371]
Length = 838
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/473 (50%), Positives = 316/473 (66%), Gaps = 19/473 (4%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VK+ Y G V L P+ EEVA+ F ML++
Sbjct: 242 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKLKYAGVPVTLHPDAEEVASHFGTMLNST 301
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK I+ CDF+ I++ ++ + +K+
Sbjct: 302 HNVENPIFQKNFFNDFQAIIKKTGGAKDPQGKPIQIKEFSKCDFRTIFEHYERLRAEKRA 361
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKKA K EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G +K R+
Sbjct: 362 MSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGTVKTRVM 421
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 422 PEQITINIGKDAPVP-APPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 479
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 480 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 539
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 540 EADTVGCCSLKFEHVTLKPPNTVVFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 599
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 600 DEIFDRLTTSALNKHLSSYMPGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 659
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGK 849
N+EVAI+CNH+RTV+ H+ QM +L ++I+ L K +K + +DLD + K K
Sbjct: 660 NREVAILCNHKRTVAAGHANQMEKLGDRIKGLQYQKWRIKQMILDLDSSMKKK 712
>gi|397497408|ref|XP_003819503.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Pan
paniscus]
gi|397497410|ref|XP_003819504.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Pan
paniscus]
gi|397497412|ref|XP_003819505.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 3 [Pan
paniscus]
Length = 503
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/510 (47%), Positives = 325/510 (63%), Gaps = 17/510 (3%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
ML +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRIMPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
D+LFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 RDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR T M L KI+ K +V RA+ + +
Sbjct: 359 RANRVVAILCNHQRATPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQ 413
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
G K E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR
Sbjct: 414 GDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKR 473
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
VP+EKI++K+ +FAWA+ + E F F
Sbjct: 474 FRVPVEKIYSKTQRERFAWALAMAGEDFEF 503
>gi|426360898|ref|XP_004047665.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Gorilla
gorilla gorilla]
Length = 503
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/510 (47%), Positives = 324/510 (63%), Gaps = 17/510 (3%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGNHPKMGMLKRRIMPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 RDDLFDRLTTISLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR M L KI+ K +V RA+ + +
Sbjct: 359 RANRVVAILCNHQRATPSMFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQ 413
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
G K E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWC+R
Sbjct: 414 GDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCRR 473
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
VP+EKI++K+ +FAWA+ + E F F
Sbjct: 474 FRVPVEKIYSKTQRERFAWALAMAGEDFEF 503
>gi|296811446|ref|XP_002846061.1| DNA topoisomerase 1 [Arthroderma otae CBS 113480]
gi|238843449|gb|EEQ33111.1| DNA topoisomerase 1 [Arthroderma otae CBS 113480]
Length = 896
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/467 (50%), Positives = 316/467 (67%), Gaps = 19/467 (4%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VKM Y G + L P+ EEVA+ F ML++
Sbjct: 257 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKMKYAGVPITLHPDAEEVASHFGTMLNST 316
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK ++ CDF PI++ H++ + +KK
Sbjct: 317 HNVENPVFQKNFFNDFQAIIKKTGGAKDPQGKPVQVKEFAKCDFVPIFEHHEKLRAQKKA 376
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
M++ EKKA K EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G +K R+Q
Sbjct: 377 MTAAEKKAAKAEKDAAEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGTVKTRVQ 436
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 437 PEQITINIGKDAPVP-APPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 494
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 495 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 554
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 555 EADTVGCCSLKFEHVTLKPPNTVVFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKAPKKEG 614
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL MPGLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 615 DEIFDRLTTSALNKHLSNYMPGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 674
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD 843
N+EVAI+CNH+RTV+ +H+ QM +L ++I+ L K +K + +D+D
Sbjct: 675 NREVAILCNHKRTVAASHANQMEKLGDRIKGLQYQKWRIKQMMLDID 721
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E E ++++ + +IE M + KE+ K VALGTSK+NY+DPR+TV + K+ VPIEK F
Sbjct: 816 EKFEGQISKIDQRIENMLLQAEDKENNKEVALGTSKLNYIDPRLTVVFSKKFNVPIEKFF 875
Query: 927 NKSLLAKFAWAM-DVDPEFRF 946
+K++ KF WA+ VD ++ F
Sbjct: 876 SKTMREKFDWAIKSVDEDWEF 896
>gi|50551651|ref|XP_503300.1| YALI0D26103p [Yarrowia lipolytica]
gi|49649168|emb|CAG81506.1| YALI0D26103p [Yarrowia lipolytica CLIB122]
Length = 760
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/477 (50%), Positives = 314/477 (65%), Gaps = 19/477 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL H GV+FPP Y LP V M Y G V L EEVA F ML+TD+ +
Sbjct: 130 DDSIKWETLEHKGVMFPPEYEPLPKSVLMKYDGTPVVLPHAAEEVAGFFGAMLETDHAKN 189
Query: 456 PKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
P F++NF+ND++ +L G N I+ CDF +Y ++ +E+KK MS+ E
Sbjct: 190 PTFQKNFFNDFKAVLKESGGAKDKDGNNVQIKAFSKCDFSDMYAHFEKMREEKKAMSAAE 249
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
KKA+K E++K EE + +++G KE+VGNFR+EPPGLFRGRG HPK GKLK+R+ P IT
Sbjct: 250 KKAIKAERDKIEEPFKVCLLNGRKEQVGNFRIEPPGLFRGRGAHPKTGKLKRRVMPEQIT 309
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
INIGK VP+PE P G W EV+HDN+V WLA W++ IN KYV AA+SSLKG SD
Sbjct: 310 INIGKGVPVPEPP-AGHKWGEVRHDNSVAWLAMWHENIN-NSIKYVLFAANSSLKGMSDY 367
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
+K+EKAR+LK ++ +IR Y K+ S RQ A A YLID LALRAG EK DDEADTV
Sbjct: 368 KKFEKARELKKHVATIRKDYEKELKSEAMFERQRATAMYLIDVLALRAGGEKGDDEADTV 427
Query: 686 GCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFD 744
GCC+L+ ++ PPN ++FDFLGKDSI+Y VEV V+K + F+ KK DD+FD
Sbjct: 428 GCCSLRYEHITLSPPNIVEFDFLGKDSIRYHQEVEVSPQVFKNLRIFKKAPKKVGDDIFD 487
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
+LD + LN HL+ MPGLTAKVFRTYNAS T+D L +G VA K+ + AN+ VA
Sbjct: 488 RLDPSVLNKHLQNYMPGLTAKVFRTYNASKTMDDQLALIPNEGTVAEKLVKFNAANRAVA 547
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSD 857
I+CNHQ+TVSKTH + ++ ++I ++ K K + +DL+ + K +P L +D D
Sbjct: 548 ILCNHQKTVSKTHGESVGKIEDRINEVVWQKWRHKRMLLDLEPKLLKKEPKLFEDLD 604
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E L ++ + ++ M +K KED +VALGTSK+NY+DPR+TV + K+++VPIEK+F
Sbjct: 680 EKLRAQVEKLETRVTTMRMQLKDKEDNSSVALGTSKMNYIDPRLTVKFSKKYDVPIEKLF 739
Query: 927 NKSLLAKFAWAM---DVDPEF 944
K+L KF WA+ D D EF
Sbjct: 740 TKTLRDKFQWAIQSADEDWEF 760
>gi|315044233|ref|XP_003171492.1| DNA topoisomerase 1 [Arthroderma gypseum CBS 118893]
gi|311343835|gb|EFR03038.1| DNA topoisomerase 1 [Arthroderma gypseum CBS 118893]
Length = 895
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 274/642 (42%), Positives = 369/642 (57%), Gaps = 91/642 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPPPY LP VK+ Y G + L P+ EEVA+ F ML++
Sbjct: 256 PSKGDGTIKWTTLEHNGVVFPPPYEPLPKDVKLKYDGVPITLHPDAEEVASHFGTMLNST 315
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND++ ++ GK I+ CDF I++ ++ + +KK
Sbjct: 316 HNVENPIFQKNFFNDFQAIIKKTGGAKDPQGKPIQIKEFSKCDFTTIFEHYERLRAEKKA 375
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKKA K EK+ E YM+ I DG K+KVGNFRVEPP LFRGRGEHPK G +K R+
Sbjct: 376 MSAAEKKAAKAEKDAAEAPYMYCIWDGRKQKVGNFRVEPPALFRGRGEHPKTGTVKTRVM 435
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD P+P P G WKEV+HD TWLA W + +N +KYV LAA+S +K
Sbjct: 436 PEQITINIGKDAPVP-TPPEGHRWKEVRHDQEGTWLAMWQENVN-GNYKYVMLAANSDVK 493
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 494 GQSDYKKFEKARELKKHIDRIRKDYKKGLKDELMVNRQRATAVYLIDQFALRAGNEKGED 553
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 554 EADTVGCCSLKFEHVTLKPPNTVVFDFLGKDSIRYYDEVEVDAQVFKNLKIFKKAPKKEG 613
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL M GLTAKVFRTYNAS T+ +L K + G + K+ Y A
Sbjct: 614 DEIFDRLTTSALNKHLSSYMTGLTAKVFRTYNASYTMATLLKKMSATGTIPEKVKQYNDA 673
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N+EVAI+CNH+RTV+ H+ QM +L ++I+ L K +K + + ++ + KKG
Sbjct: 674 NREVAILCNHKRTVAAGHANQMEKLGDRIKGLQYQKWRIKQMILAIEPKMKKKKGAAYFE 733
Query: 854 KDSDG-----KRKRNLAPEALERKM-----AQTNAKIEKMERDMKTK---EDLK------ 894
D D K + E L +K+ + ++ E++MK K E LK
Sbjct: 734 LDEDLDMEWIKEHQAFLAEELRQKIRKKFDKENEKRVADGEKEMKAKELDERLKAADELE 793
Query: 895 -------------------TVALGTSKINYLDPRI------------------------- 910
TV +I+ +D RI
Sbjct: 794 AKYKKENKTKKVEAEGRGPTVEKFEGQISKIDQRIENMLLQAEDKENNKEVALGTSKLNY 853
Query: 911 -----TVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
TV + K+ VPIEK F+K++ KF WA+ VD E+ F
Sbjct: 854 IDPRLTVVFSKKFNVPIEKFFSKTMREKFDWAIKSVDEEWEF 895
>gi|190347829|gb|EDK40177.2| hypothetical protein PGUG_04275 [Meyerozyma guilliermondii ATCC
6260]
Length = 754
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 275/629 (43%), Positives = 371/629 (58%), Gaps = 82/629 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG++KW +L HNGV+FPP Y LP VKM Y GK V+L P EEVA FA ML+TD+ Q
Sbjct: 128 DGEQKWESLHHNGVMFPPEYEPLPSHVKMYYDGKPVDLAPAAEEVAGFFAAMLETDHAQN 187
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NFWND+ +++ G N +++ DF ++ + KE+KK MS +EKKALKE
Sbjct: 188 PVFQKNFWNDFLQVVKESGGANVEMKDFTKADFTKMHAHFEMLKEQKKNMSRDEKKALKE 247
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
K K+EE Y +++G KE+VGNFRVEPPGLFRGRG HPK GKLKKR+ P DIT+N+ K+
Sbjct: 248 AKEKEEEPYKTCLLNGRKEQVGNFRVEPPGLFRGRGAHPKTGKLKKRVYPEDITLNLSKE 307
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
+PE P G W EV+HDNTV WLA W + I+ KYV AA+SS+KGQSD +K+E A
Sbjct: 308 CKVPEPP-AGHKWGEVRHDNTVAWLAMWKENIS-DSLKYVRFAANSSVKGQSDFKKFETA 365
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R LK +I +IR YTK RQ+A ATYLID ALRAG EK DDEADTVGCC+L+
Sbjct: 366 RNLKFHIDAIRTDYTKLLKDPLMQNRQMATATYLIDVFALRAGGEKGDDEADTVGCCSLR 425
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
++ PPN++ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD++
Sbjct: 426 YEHITLKPPNQVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKPPKQPGDDLFDRISPPM 485
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
LN + M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNHQ
Sbjct: 486 LNKQFQGYMKGLTAKVFRTYNASKTMQDQIDLIPNEGTVAEKVVRFNAANRTVAILCNHQ 545
Query: 811 RTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPP--------LMKDSDGK 859
RTVSKTH + R+ ++I+++ K K + ++L+ + K P L K+ +
Sbjct: 546 RTVSKTHGHSVQRIHDRIKEMMWQKIRTKKMILELEPGLRRKDPKYFEELEDLSKEDEQH 605
Query: 860 RKRNL---APEALERKMAQTNAKI--------------EKMERDMKTKEDL-------KT 895
L A E +RK + N K+ EKME+ + ++DL K
Sbjct: 606 VHHLLLERAREQAQRKFERENQKLKAEGKELLSSSVLDEKMEKIKEQEKDLAEELKTGKP 665
Query: 896 VALGTSKINYL-------------------------------------DPRITVAWCKRH 918
V T+ + L DPR+TV + K+
Sbjct: 666 VMKSTTTVEKLKAQVEKLDGRIVNTTFQLQDKEDNSEVSLGTSKLNYIDPRLTVMFSKKF 725
Query: 919 EVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 726 DVPIEKLFTKTLRDKFKWAIESADENWRF 754
>gi|146415152|ref|XP_001483546.1| hypothetical protein PGUG_04275 [Meyerozyma guilliermondii ATCC
6260]
Length = 754
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 275/629 (43%), Positives = 371/629 (58%), Gaps = 82/629 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG++KW +L HNGV+FPP Y LP VKM Y GK V+L P EEVA FA ML+TD+ Q
Sbjct: 128 DGEQKWESLHHNGVMFPPEYEPLPSHVKMYYDGKPVDLAPAAEEVAGFFAAMLETDHAQN 187
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NFWND+ +++ G N +++ DF ++ + KE+KK MS +EKKALKE
Sbjct: 188 PVFQKNFWNDFLQVVKESGGANVEMKDFTKADFTKMHAHFEMLKEQKKNMSRDEKKALKE 247
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
K K+EE Y +++G KE+VGNFRVEPPGLFRGRG HPK GKLKKR+ P DIT+N+ K+
Sbjct: 248 AKEKEEEPYKTCLLNGRKEQVGNFRVEPPGLFRGRGAHPKTGKLKKRVYPEDITLNLSKE 307
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
+PE P G W EV+HDNTV WLA W + I+ KYV AA+SS+KGQSD +K+E A
Sbjct: 308 CKVPEPP-AGHKWGEVRHDNTVAWLAMWKENIS-DSLKYVRFAANSSVKGQSDFKKFETA 365
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R LK +I +IR YTK RQ+A ATYLID ALRAG EK DDEADTVGCC+L+
Sbjct: 366 RNLKFHIDAIRTDYTKLLKDPLMQNRQMATATYLIDVFALRAGGEKGDDEADTVGCCSLR 425
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
++ PPN++ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD++
Sbjct: 426 YEHITLKPPNQVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKPPKQPGDDLFDRISPPM 485
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
LN + M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNHQ
Sbjct: 486 LNKQFQGYMKGLTAKVFRTYNASKTMQDQIDLIPNEGTVAEKVVRFNAANRTVAILCNHQ 545
Query: 811 RTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPP--------LMKDSDGK 859
RTVSKTH + R+ ++I+++ K K + ++L+ + K P L K+ +
Sbjct: 546 RTVSKTHGHSVQRIHDRIKEMMWQKIRTKKMILELEPGLRRKDPKYFEELEDLSKEDEQH 605
Query: 860 RKRNL---APEALERKMAQTNAKI--------------EKMERDMKTKEDL-------KT 895
L A E +RK + N K+ EKME+ + ++DL K
Sbjct: 606 VHHLLLERAREQAQRKFERENQKLKAEGKELLSSSVLDEKMEKIKEQEKDLAEELKTGKP 665
Query: 896 VALGTSKINYL-------------------------------------DPRITVAWCKRH 918
V T+ + L DPR+TV + K+
Sbjct: 666 VMKSTTTVEKLKAQVEKLDGRIVNTTFQLQDKEDNSEVSLGTSKLNYIDPRLTVMFSKKF 725
Query: 919 EVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 726 DVPIEKLFTKTLRDKFKWAIESADENWRF 754
>gi|342890160|gb|EGU89024.1| hypothetical protein FOXB_00436 [Fusarium oxysporum Fo5176]
Length = 921
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 287/681 (42%), Positives = 387/681 (56%), Gaps = 81/681 (11%)
Query: 217 GIGASKADAAISEVNVKTDPEDSDDEVPL-------------------SSRFPKSNAGTS 257
G K+ +IS+VN K D E SDD PL ++R P+S
Sbjct: 66 GASKRKSRTSISKVNYKDD-ESSDDAAPLVRIHDTGKPFLWGQRQKKQANRVPES----- 119
Query: 258 GAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPL-----QKASSSGASSAKKPK 312
DSD++ ++ ++ + ET SS PL QK + K+ K
Sbjct: 120 -----DSDDEPIARARGKKLPPSYDETALPESSGDDDEPLSVKLAQKKRDMEKEAEKQAK 174
Query: 313 VSDTSKEVKVKQVTVKVEKKADDDDHIPI-----SQRMKNSAPSVKKS------------ 355
V +KE K T K K DDD +P+ S+R N + +KS
Sbjct: 175 VI-RAKERTKKPATKKAVKDESDDD-VPLAKSSASKRRSNGTAAKRKSNGVKKEESDSDA 232
Query: 356 -VTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKM-LPGSGDGQKKWTTLVHNGVIF 413
++ AKA K SS+ + ++KK ++ + P + KWTTL HNGV+F
Sbjct: 233 PISKKAKA-KPTSSAKKAVKAESKKASESEDEEEYAWWNAPKKENDDIKWTTLEHNGVLF 291
Query: 414 PPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML---DTDYMQKPKFRENFWNDWRK 468
PP Y LP VKMLY G+ V L PE EEVAT + M+ + +++ P FR+NF+ D+++
Sbjct: 292 PPDYEPLPKNVKMLYDGQPVTLAPEVEEVATFWVAMMTPASSHHLENPVFRKNFFEDFKE 351
Query: 469 LL---------GKNHVIQNLEGCDFKPIYDWHQEQKE--KKKQMSSEEKKALKEEKNKQE 517
GK +++LE C+F IY + E+ E K K M+ EE++A K +K+ E
Sbjct: 352 YCDKYGVTDAQGKKVAVKSLEKCNFDKIYAYWSEKVEQNKSKNMTKEEREAAKAKKDALE 411
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K+R+QP ITINIGK +PE
Sbjct: 412 APFTHCLWDGRKQKVGNFRVEPPSLFRGRGEHPKTGKVKQRVQPEQITINIGKGAKVPEP 471
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WK V+HD TWLA W + IN + +KYV L A S +KGQSD +K+EKAR+LK +
Sbjct: 472 P-KGHKWKAVQHDQKATWLAMWQENIN-QNYKYVMLGADSDIKGQSDFKKFEKARELKKH 529
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVE 696
I IR YTK+ S RQ A A YLIDK+ALRAGNEKD ++EADTVGCC+LK ++
Sbjct: 530 IDKIRKDYTKELKSEVMADRQRATAMYLIDKMALRAGNEKDTENEADTVGCCSLKYEHIT 589
Query: 697 CIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHL 755
PPNK+ FDFLGKDSI Y T VE V+K + F+ K DDLFD+L+T++LN HL
Sbjct: 590 LEPPNKVTFDFLGKDSIPYRETAIVEPQVFKNLKLFKKAPKTTGDDLFDRLNTSQLNKHL 649
Query: 756 KELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQR 811
M GLTAKVFRTYNAS T+ +L K D G VA K+ +Y N+EVA++CNH+R
Sbjct: 650 TGYMKGLTAKVFRTYNASWTMSELLRKLASDPRSRGTVAEKVKLYNDCNREVAVLCNHKR 709
Query: 812 TVSKTHSAQMSRLTEKIEDLK 832
TV H QM++L ++I+ L+
Sbjct: 710 TVGAGHEQQMAKLGDRIKGLR 730
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R + + L + + + + +I+ +E + ++ K VALGTSKINY+DPR+TV + K+ +VP
Sbjct: 834 RGVTVDKLLKAVDKFDERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVP 893
Query: 922 IEKIFNKSLLAKFAWAM 938
IEK F+K+L KF WA+
Sbjct: 894 IEKFFSKTLRDKFRWAI 910
>gi|150865726|ref|XP_001385059.2| DNA topoisomerase I [Scheffersomyces stipitis CBS 6054]
gi|149386982|gb|ABN67030.2| DNA topoisomerase I [Scheffersomyces stipitis CBS 6054]
Length = 780
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 273/652 (41%), Positives = 373/652 (57%), Gaps = 82/652 (12%)
Query: 197 SEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGT 256
SED+ LS R+K SK S A SE+ DD++PLS R N G
Sbjct: 4 SEDEIVLSKRVKKTSKK-----NGSMTSTAASEL---------DDDLPLSQR----NNGV 45
Query: 257 SGAK--PIDSDEKKPLASKVQ-----QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAK 309
+K +D D ++P+A KV +NGS++ + K + +S S K
Sbjct: 46 VKSKDTSVDEDYEEPIAEKVNRKRKSENGSSTVPKKTKKVK-------TETDASAKKSDK 98
Query: 310 KPKVSDTSK---EVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSV 366
+PK +K E K K VK EK D+ +P SQ + + A+
Sbjct: 99 EPKQKRETKPKKETKSKNAAVKAEK----DEDVPTSQNEEKDEDEDEGYKWWEAEDV--- 151
Query: 367 SSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKM 424
DG +KW TL HNGV+FPP Y LP VK+
Sbjct: 152 -------------------------------DGVQKWETLEHNGVLFPPEYEPLPSHVKL 180
Query: 425 LYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL----GKNHVIQNLE 480
Y GK V L+ E EEVA + ML+TD+ + P F++NF+ D+ ++ G + I++ E
Sbjct: 181 YYDGKPVKLSLEAEEVAGFYGAMLETDHAKNPVFQKNFFGDFLDVIKETNGSDVEIKDFE 240
Query: 481 GCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPP 540
DF I+ ++ +E+KK ++ ++KKA+KEEK + EE Y + +G KE VGNFRVEPP
Sbjct: 241 KLDFSKIFAHFEKLREEKKLLTKDQKKAMKEEKERIEEPYKTCLFNGHKELVGNFRVEPP 300
Query: 541 GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWN 600
GLFRGRG HP+ GKLK+R+ P +T+NIG IPE P PG SW E+K+DNTVTWLA W
Sbjct: 301 GLFRGRGAHPRTGKLKRRVYPEMVTLNIGAGAKIPEAP-PGHSWGEIKNDNTVTWLAMWR 359
Query: 601 DPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIA 660
+ I FKYV AASSS+KG SD +K+E AR+L+ ++ +IR YTK S RQ+A
Sbjct: 360 ENI-ADSFKYVRFAASSSIKGVSDFKKFETARRLRSHVDAIRKDYTKMLKSELMQDRQMA 418
Query: 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE 720
A YLID ALRAG EK DDEADTVGCC+L+ ++ PPNK+ FDFLGKDSI++ VE
Sbjct: 419 SAIYLIDVFALRAGGEKGDDEADTVGCCSLRYEHITLKPPNKVIFDFLGKDSIRFYQEVE 478
Query: 721 VELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
V+ V+K + F+ KQ DDLFD+++ LN L+ M GLTAKVFRTYNAS T+
Sbjct: 479 VDKQVFKNLRIFKKAPKQPGDDLFDRINPTMLNKQLQNYMKGLTAKVFRTYNASKTMQDQ 538
Query: 780 LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL 831
L+ +G VA K+ + AN+ VAI+CNHQRTVSK H + + ++ +K+++L
Sbjct: 539 LDLIPNEGTVAEKVVKFNAANRTVAILCNHQRTVSKGHGSSVQKINDKLKEL 590
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDG 858
A + ++ QR K + LTEK +++K + + DL++ K + + +
Sbjct: 636 ARQREQVLKKMQRDNEKLKLEKQEILTEKSDEIKEKMAKID-DLEKEYKAE---LNGAKP 691
Query: 859 KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
+ K+NL E L++++ +I +K KED V+LGTSK+NY+DPR+TV + K+
Sbjct: 692 EVKKNLTVEKLQQQVEVIENRIVTTTLQLKDKEDNSEVSLGTSKMNYIDPRLTVMFSKKF 751
Query: 919 EVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEK+F K+L KF WA++ D +RF
Sbjct: 752 DVPIEKLFTKTLRDKFKWAIESADENWRF 780
>gi|332263525|ref|XP_003280802.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Nomascus
leucogenys]
Length = 503
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/510 (47%), Positives = 323/510 (63%), Gaps = 17/510 (3%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K F++NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ E
Sbjct: 1 MLDHEYTTKEVFQKNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LK E K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HP+MG LK+RI P D+
Sbjct: 61 EKQKLKGEAEKLQQEFGYCILDGHREKIGNFKIEPPGLFRGRGDHPRMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG+
Sbjct: 121 VINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGEKA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E AD
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y
Sbjct: 299 QDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR T M L KI+ K +V RA+ + +
Sbjct: 359 RANRVVAILCNHQRVTPSTFEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQ 413
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
G K E R + + ++ + KE+ K VALGTSK+NYLDPRI++AWCKR
Sbjct: 414 GDAKSRSVLEKKRRLLEKLQEQLAGLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKR 473
Query: 918 HEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
VP+EKI++K+ +FAWA+ + E F F
Sbjct: 474 FRVPVEKIYSKTQRERFAWALTMAGEDFEF 503
>gi|224009518|ref|XP_002293717.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970389|gb|EED88726.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 536
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/523 (46%), Positives = 337/523 (64%), Gaps = 36/523 (6%)
Query: 456 PKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
P F +NF+ D+R +LGKNH+I++ + CDF PI EQK +K ++ EE+K K+ KN+
Sbjct: 10 PIFIKNFFTDFRTILGKNHIIKDFKKCDFGPIQRHLNEQKLIRKAITDEERKVNKDSKNE 69
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
K+ +A+VDG EKVGN+ +EPPG FRGRGEHPKMGKLK+R++P + IN+ +D P+P
Sbjct: 70 TLFKFGYALVDGHLEKVGNYNMEPPGAFRGRGEHPKMGKLKQRVEPEQVMINVSEDAPVP 129
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
C +PG +W EV+HD TV WL W + IN + KY+ LAA SS KG+SDR KY KA KL
Sbjct: 130 MCSVPGHAWGEVRHDPTVQWLCQWKENIN-NQVKYMQLAAQSSFKGKSDRSKYNKAAKLC 188
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGN 694
I IR Y K+ S+ RQ+A A ++ID+LALR G EKD D+EADTVGCC+L+V +
Sbjct: 189 GNIDKIRTDYKKNLTSKSLETRQLATAMWVIDRLALRVGGEKDTDEEADTVGCCSLRVEH 248
Query: 695 VECIPPN------KLKFDFLGKDSIQYVNTVE-----------VELPVYKAIGQFQTGKK 737
++ P N +++ +FLGKDS+ + T++ + VYK F KK
Sbjct: 249 LKFDPNNEGEDSKEIELEFLGKDSMLFKQTIDFGSALYTENNGMGEQVYKNFQLFCKKKK 308
Query: 738 QNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-----GTGDGDVAVK 792
DD+F L LNAHLK +M GLTAKVFRTYNAS TL L K G A K
Sbjct: 309 PTDDVFSDLTPTILNAHLKSIMEGLTAKVFRTYNASKTLQDELTKTETAAGWKRLTAAEK 368
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL----KGVLKDLRVDLDRAKKG 848
+ Y AN+EVAI+CNHQR+VSK + L +K++ L K + K L+V ++ + K
Sbjct: 369 VVEYNNANREVAILCNHQRSVSKAQETTLENLGDKLQTLNDQKKALKKILKVIMENSDKK 428
Query: 849 KPPLMKDSDGKRKRNL-----APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 903
P MK+ D + +L E + +++ + KI+KME ++K K+D K V+LGTSK+
Sbjct: 429 IP--MKE-DATKAGHLWEKKPTKEQVTKRITAWSEKIKKMELNIKHKDDNKEVSLGTSKL 485
Query: 904 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
NY+DPRI+VAWCKR+EVPIEKIF+K++ KF WAM V P+++F
Sbjct: 486 NYMDPRISVAWCKRNEVPIEKIFSKTMRDKFNWAMAVTPDWQF 528
>gi|320590738|gb|EFX03181.1| topoisomerase 1 [Grosmannia clavigera kw1407]
Length = 832
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 298/740 (40%), Positives = 411/740 (55%), Gaps = 95/740 (12%)
Query: 195 NDSEDDKPLSARLKGNSKNVN--------------------QGIGASKADAAISEVNVKT 234
+ S+DD+PL AR G+ N GI KA ++
Sbjct: 3 DSSDDDRPL-ARSNGHGSNSTPNMAVTNVTSRNGPANGDHANGIAKRKARISLDTKISYK 61
Query: 235 DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVK 294
D DSDD PL + +DSD+ KPL++KV + ST V
Sbjct: 62 DESDSDDNAPLDTPM------------LDSDDDKPLSAKVAKRASTV-----------VA 98
Query: 295 RPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKK 354
RP KPK S +SK K VK+++++D D I + + +S P+VK
Sbjct: 99 RP-------------KPKASASSK----KANGVKLKEESDSDTPIAKKKIVSSSKPAVKP 141
Query: 355 SVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKM--------LPGSGDGQKKWTTL 406
+ ++ KS + + K K +++ P D KWTTL
Sbjct: 142 AAKSSRPPAKSAPTPKKAVGAKGLKKEESADLGDQEAEGQDYRWWDQPKKEDDSIKWTTL 201
Query: 407 VHNGVIFPPP--YLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQKPKFRENFW 463
HNGV+FPPP LP V++ Y G V L PE EEVAT F ML T + P F++NF+
Sbjct: 202 EHNGVVFPPPNQSLPKHVRLYYDGAPVELHPEAEEVATFFGSMLHLTVNTENPTFQKNFF 261
Query: 464 NDWRKLLGKNHVIQNLEG----------CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
D+++++ K ++ L+G DFKP+++ + E KK S EEKK K+EK
Sbjct: 262 ADFQEVVEKTGGVKRLDGSKVALRDFTKLDFKPMFEHFKGLTEAKKTRSKEEKKVEKDEK 321
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K E Y++ DG KEKVGNFRVEPPGLFRGRGEHPK G++KKR+ P +TINIGKD
Sbjct: 322 AKLEAPYLYCKWDGRKEKVGNFRVEPPGLFRGRGEHPKTGRVKKRVAPEQVTINIGKDAA 381
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+P P PG WK V+HDN TWLA W + IN +KYV LAA+S++KGQ+D +K+EKAR+
Sbjct: 382 VP-MPPPGHKWKAVQHDNKATWLAMWQENINGC-YKYVMLAANSAIKGQADHKKFEKARE 439
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKV 692
LK +I IRA YT++ S RQ A A YLID+ ALRAGNEKD D+EADTVGCC+LK
Sbjct: 440 LKKHITRIRADYTRELKSEVMADRQRATAMYLIDRFALRAGNEKDTDNEADTVGCCSLKY 499
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKL 751
++ PN + FDFLGKDSI Y + V V+ V+K + F+ K++ DD+FD+L+T++L
Sbjct: 500 EHITLREPNTVIFDFLGKDSIPYYDEVTVDRQVFKNLKMFKKPPKEDGDDIFDRLNTSQL 559
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL M GLTAKVFRTYNAS T+ +L + +A K+ +Y N++VAI+CNH+
Sbjct: 560 NKHLSSYMQGLTAKVFRTYNASYTMSKLLQELPVTSLSIAEKVKLYNDCNRKVAILCNHK 619
Query: 811 RTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLMKDSDGKRKRNL 864
RTV +H AQM ++ ++I+ L K K + +D+D + K+G DSD + L
Sbjct: 620 RTVGASHEAQMEKIGDRIKGLKYQKWRTKMMILDVDSKQKKKRGAEYFELDSDISDEWVL 679
Query: 865 APEAL--ERKMAQTNAKIEK 882
A +A E + + K EK
Sbjct: 680 AHQAFLVEEQRIKITKKFEK 699
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + +I ME K+ K VAL TSKINY+DPR+TV + K+ +VPIEK F
Sbjct: 750 EKLEAAAQKIDERIHNMELQAADKDGNKEVALSTSKINYIDPRLTVVFSKKFDVPIEKFF 809
Query: 927 NKSLLAKFAWAM 938
+K+L KF WA+
Sbjct: 810 SKTLREKFNWAI 821
>gi|407851024|gb|EKG05158.1| DNA topoisomerase IB, large subunit [Trypanosoma cruzi]
Length = 599
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/410 (54%), Positives = 283/410 (69%), Gaps = 5/410 (1%)
Query: 433 LTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWH 491
LTPE+EEVATMFAVM + DY + FR NF++ WR++L + H I+ LE CDF+PIY WH
Sbjct: 14 LTPEEEEVATMFAVMREHDYYRNEIFRRNFFSSWREILDRRQHPIRRLELCDFEPIYQWH 73
Query: 492 QEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK 551
++EKK + EEKK L+ E K+ E Y W + DG KE+V NFRVEPPGLFRGRG+HP
Sbjct: 74 LREREKKLSRTKEEKKQLRLEAEKEAEPYKWCVWDGKKEQVANFRVEPPGLFRGRGQHPM 133
Query: 552 MGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYV 611
MGKLKKR++P DITINI + PIP+ P G WKEV H++ VTWLA W D I FKYV
Sbjct: 134 MGKLKKRVEPEDITINIDEFSPIPKPP-EGHRWKEVLHEHNVTWLAMWRDSI-LGSFKYV 191
Query: 612 FLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLAL 671
LA SS++KGQSD K+EKAR+LK+++ IR Y +DF SR+ + Q AVA Y IDKLAL
Sbjct: 192 MLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESRELMKAQRAVAMYFIDKLAL 251
Query: 672 RAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
R GNEK DEADTVGCC+L+V ++E P +KFDFLGKDSI+Y N V VY+ + +
Sbjct: 252 RVGNEKGSDEADTVGCCSLRVEHIELKPDYVVKFDFLGKDSIRYENEAVVLPRVYELLRR 311
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG--DGDV 789
F GKK DD+FD + LN HLK M GL+AKVFRTYNASITLD + V
Sbjct: 312 FTKGKKTGDDIFDMITPTVLNDHLKSFMAGLSAKVFRTYNASITLDRWFKEKPVPPSASV 371
Query: 790 AVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR 839
A K+ + +AN EVAI+CNHQ+++SK H M +LT+K + ++ L+
Sbjct: 372 ADKLAYFNKANTEVAILCNHQKSISKNHHNLMHQLTQKSSYTRTIIDALK 421
>gi|357604317|gb|EHJ64132.1| hypothetical protein KGM_04878 [Danaus plexippus]
Length = 873
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/459 (51%), Positives = 305/459 (66%), Gaps = 17/459 (3%)
Query: 496 EKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 555
EK K S EEK ALK + + +++Y + +DG KEK+GNFR+EPPGLFRGRGEHPKMG L
Sbjct: 424 EKNKNRSKEEKAALKAKNEEIQKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGML 483
Query: 556 KKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
K+R+ P D+ IN KD IP+ P G WKEV+HDNTVTWLA W + + ++ KYV L
Sbjct: 484 KRRVMPEDVIINCSKDSKIPKPP-AGHKWKEVRHDNTVTWLASWTENVQ-QQAKYVMLNP 541
Query: 616 SSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGN 675
SS LKG+ D +KYE AR L I IR Y D+ +++ RQ AVA Y ID+LALRAGN
Sbjct: 542 SSKLKGEKDWQKYETARNLHKCIDKIRETYKSDWKAKEMRVRQRAVALYFIDRLALRAGN 601
Query: 676 EKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIG 730
EKDDD+ADTVGCC+L+V ++E K FDFLGKDSI+Y N V VE V+K +
Sbjct: 602 EKDDDQADTVGCCSLRVEHIELHKEKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLE 661
Query: 731 QFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDV 789
F KK +DDLFD+L+T LN HLKELMPGLTAKVFRTYNASITL L + T D +
Sbjct: 662 IFMENKKDSDDLFDRLNTQTLNEHLKELMPGLTAKVFRTYNASITLQRQLEELTDPDATI 721
Query: 790 AVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL-DRAKKG 848
KI Y RAN+ VAI+CNHQR V K HS M L EKI+ + + + D D AK
Sbjct: 722 PEKILAYNRANRAVAILCNHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEADYRDAAKAA 781
Query: 849 KPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDP 908
K G K LA + ++ + + +++K+E +++ KT+ALGTSK+NYLDP
Sbjct: 782 KR-------GSVKEKLACDKKKKALERLKEQLKKLELQETDRDENKTIALGTSKLNYLDP 834
Query: 909 RITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
RI+V+WCK+H VPIEKI+NK+ KF WA+D+ P++ F
Sbjct: 835 RISVSWCKKHGVPIEKIYNKTQRDKFRWAIDMAGPDYIF 873
>gi|403169465|ref|XP_003328910.2| hypothetical protein PGTG_10211 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167970|gb|EFP84491.2| hypothetical protein PGTG_10211 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 973
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/458 (51%), Positives = 298/458 (65%), Gaps = 16/458 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KKW+TL HNGV+FPP Y LP VKM Y GK V+L PE EEVA + ML++D+++K
Sbjct: 287 DDTKKWSTLQHNGVLFPPEYEPLPGHVKMKYNGKSVDLPPESEEVAFFYGSMLNSDHVKK 346
Query: 456 PKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
FR+NF++DW ++L K H I+ CDF P++D+ +++EKKK MS EEK +
Sbjct: 347 AVFRQNFFHDWLEVL-KEHPPRDGTKIKEFSKCDFTPMFDYASDEREKKKAMSKEEKMKM 405
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
K+E++ E KY I+DG EKVGNFRVEPPGLFRGRGEHPK GKLKKR++ DI IN G
Sbjct: 406 KKERDALEAKYKTCILDGRVEKVGNFRVEPPGLFRGRGEHPKTGKLKKRVRAEDIHINCG 465
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
D PE P PG W ++ H +WLA+W + IN FKYVFLAA SSL GQSD +K+E
Sbjct: 466 ADSKFPEPP-PGHKWADITHSEKASWLAYWKENIN-GNFKYVFLAAGSSLGGQSDLKKFE 523
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCC 688
KARKLKD I IR Y R RQ A A YLID+ ALRAGNEK +EADTVGCC
Sbjct: 524 KARKLKDIIDDIRNDYQTKLRDRMMAVRQRATAMYLIDRFALRAGNEKQAGEEADTVGCC 583
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+L+ N+ PP + DFLGKDSI++ N EV+ V+K + F G D++FD+L T
Sbjct: 584 SLRAENITLEPPCTVTLDFLGKDSIRFFNKFEVDEAVFKNLKIFTKGSSPRDEIFDRLTT 643
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT----GDGDVAVKIDVYQRANKEVA 804
LN HL M GLTAKVFRTYNASIT + L K D A K+ Y +AN++VA
Sbjct: 644 GTLNKHLSSYMSGLTAKVFRTYNASITFERQLAKNMLELGEDAKEAEKMVAYNKANRQVA 703
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
++CNHQ+ VSK+H A M + ++I LK + R+ L
Sbjct: 704 VLCNHQKAVSKSHGASMEKCADRIRILKYRRRLCRIAL 741
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 888 KTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
K +++ K +LGTSK NY+DPR++ AW K+++V KIF K+L KF WA +++F
Sbjct: 915 KDRDEGKETSLGTSKTNYIDPRLSFAWAKKYDVKPAKIFAKTLQEKFTWAAATPADWKF 973
>gi|406606704|emb|CCH41928.1| DNA topoisomerase I [Wickerhamomyces ciferrii]
Length = 773
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/630 (40%), Positives = 362/630 (57%), Gaps = 83/630 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGV+FPP Y LP VK+ Y GK V+L EEVA F +L+TD+ +
Sbjct: 146 DDTIKWDTLEHNGVMFPPEYEPLPSHVKLYYDGKPVDLPLAAEEVAGFFGALLETDHGKN 205
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NF++D+ +L G N I+ E CDF ++ + + +KE+KK + + EKK L++
Sbjct: 206 PVFQKNFFHDFLDVLKESGGCNVQIKEFEKCDFTKMHQYFELKKEEKKSIPASEKKRLRQ 265
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
EK ++E Y +++G KE+VGNFRVEPPGLFRGRG HP+ GKLK+R+ P DI +N+GKD
Sbjct: 266 EKEEEEAPYKICLLNGRKEQVGNFRVEPPGLFRGRGAHPRTGKLKRRVFPEDIILNLGKD 325
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
P+P P G W EV+HDNTV+WLA W + + KYV AA+SSLKG SD +K+EKA
Sbjct: 326 APVPPAP-EGHKWAEVRHDNTVSWLAMWRENV-LNAVKYVRFAANSSLKGMSDYKKFEKA 383
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R+LK +I +R Y + RQIA ATYLID ALRAG EK +DEADTVGCC+L+
Sbjct: 384 RELKYHIAKVREDYEGMLRDKLMLNRQIATATYLIDIFALRAGGEKSEDEADTVGCCSLR 443
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
++ PP + FDFLGKDSI++ V+V V+K + F+ K D LFD+LD +
Sbjct: 444 YEHITLSPPTTVVFDFLGKDSIRFYQEVQVAPQVFKNLKLFKKAPKGPGDQLFDRLDPSI 503
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
LN MPGLTAKVFRTYNAS T+ L+ +G A K+ + AN+ VAI+CNHQ
Sbjct: 504 LNKRFHSYMPGLTAKVFRTYNASKTMQDQLDLIPNEGTPAEKVTKFNAANRTVAILCNHQ 563
Query: 811 RTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKPPL--------------- 852
RTV+K H A M ++ +K++++ K LK + + +D+ K K P
Sbjct: 564 RTVAKGHDAAMQKIHDKLKEMLWQKIRLKKMMLQIDKNLKKKKPEYFEELEDLSKEDELE 623
Query: 853 ----------------MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKT-----KE 891
K + KR+ N + ++ + K++++E++ K K
Sbjct: 624 IHKVVIERERDKQEKKFKRDNEKRQENKEELLPQSELKEALKKVDELEKEYKKEAKSGKP 683
Query: 892 DLK----TVALGTSKINYLDPRIT------------------------------VAWCKR 917
++K TV +++ L+ RIT V +CK+
Sbjct: 684 EVKPANVTVEKLEAQVEKLEQRITNTSIQMKDKEDNSEVSLSTSKINYIDPRLSVVFCKK 743
Query: 918 HEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
+VPIEKIF K+L KF WA++ VD +RF
Sbjct: 744 FDVPIEKIFTKTLREKFKWAIESVDENWRF 773
>gi|361131992|gb|EHL03607.1| putative DNA topoisomerase 1 [Glarea lozoyensis 74030]
Length = 906
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 299/745 (40%), Positives = 413/745 (55%), Gaps = 94/745 (12%)
Query: 211 SKNVNQGIGASKAD------AAISEVNVKTDPEDSDDEVPLSSRF----PKSNAGTSGAK 260
SK VN + S +D A + K DSDDE PLS + PK+ A G
Sbjct: 76 SKPVNYNVQGSDSDEDAVPLAKRQKTTKKAVDSDSDDE-PLSKKAVHLPPKATAAAFGED 134
Query: 261 PIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEV 320
D DE PL +K+ + + K + Q + SAKKP V D S
Sbjct: 135 SSDDDE--PLTNKLANKKAAIEKKAAKEA--------QAIRAKEKKSAKKPAVKDES--- 181
Query: 321 KVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSV----SSSSNKIN-- 374
D D +P+ + +++ S K V TAK + V S S I
Sbjct: 182 --------------DSDDVPLKGKRQSNGVSAVKKVNGTAKKSNGVKKEESDSDAPIAKK 227
Query: 375 --------------KKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY- 417
KK KK + + + + P D KW TL HNGV+FPP Y
Sbjct: 228 KANGKAKAEASAPAKKGKKKEASEEVEEVYRWWDAPKKEDDSIKWETLEHNGVVFPPEYE 287
Query: 418 -LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLLGKNHV 475
LP VK+LY GK V L+ E EE+A+ F ML++ + ++ P F++NF+ND+ + + K
Sbjct: 288 PLPKNVKLLYDGKPVTLSVEAEEIASFFGAMLNSTHNVENPTFQKNFFNDFTEEIKKTGG 347
Query: 476 IQNLEG----------CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIV 525
++ EG DFKPI++++ + ++KK S+ EKKA K K+ E Y + +
Sbjct: 348 AKDREGNKIAIKEFAKLDFKPIFNYYDAKNQEKKARSTAEKKADKAAKDALEAPYTFCMW 407
Query: 526 DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWK 585
DG KE+VGNFRVEPPGLFRGRGEHPK GK+KKR+ P ITINIG++ +P P G WK
Sbjct: 408 DGRKEQVGNFRVEPPGLFRGRGEHPKTGKVKKRVTPEQITINIGENATVP-TPPEGHKWK 466
Query: 586 EVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAY 645
++HDN TWLA W + IN +KYV LAA SS+KGQSD +K+EKAR+LK +I IR Y
Sbjct: 467 SIQHDNKATWLAMWQENINGA-YKYVMLAAKSSIKGQSDYKKFEKARELKKHIDRIRKDY 525
Query: 646 TKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLK 704
T+D + RQ A A YLIDK ALRAGNEKD ++EA+TVGCC+LK +V PPN +
Sbjct: 526 TRDLKAELMADRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTLKPPNTVI 585
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLT 763
FDFLGKDSI++ + V V+ V+K + F+ KK DD+FD+L+T +LN HL MPGL+
Sbjct: 586 FDFLGKDSIRFYDEVTVDEQVFKNLKIFKKSPKKDGDDIFDRLNTTQLNKHLTNYMPGLS 645
Query: 764 AKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS 822
AKVFRTYNAS T+ +L + + + K+ +Y N++VAI+CNH+RTV H AQM
Sbjct: 646 AKVFRTYNASYTMSTLLKELKKTNLSIQEKVKLYNDCNRKVAILCNHKRTVGAGHEAQME 705
Query: 823 RLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLMKDSDGKRKRNLAPEA-------- 868
++ +KI+ K K + +D+D + KKG D D ++ LA +A
Sbjct: 706 KMGDKIKGAKYQKWRTKQMMLDIDPKQKKKKGAEYFELDEDLDQEWILAHQAFLVQEQRT 765
Query: 869 -LERKMAQTNAK-IEKMERDMKTKE 891
+E+K A+ N K + E++MK KE
Sbjct: 766 KIEKKFAKDNEKLVANGEKEMKAKE 790
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE ++ + +A+I M + +E K VALGTSKINY+DPR+TV + K+ +VPIEK F
Sbjct: 824 EKLEAQIEKRDAQISNMMLQAEDREGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFF 883
Query: 927 NKSLLAKFAWAMD-VDPE 943
+K+L KF WA++ +D E
Sbjct: 884 SKTLREKFTWAIESIDEE 901
>gi|256076899|ref|XP_002574746.1| DNA topoisomerase type I [Schistosoma mansoni]
gi|360044088|emb|CCD81635.1| putative dna topoisomerase type I [Schistosoma mansoni]
Length = 652
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/523 (46%), Positives = 329/523 (62%), Gaps = 17/523 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP V Y K + L+ EEVA +A MLD DY K F
Sbjct: 137 KWKFLEHKGPLFAPPYERLPSSVHFHYDSKPIKLSDHAEEVAGFYARMLDHDYTTKEVFN 196
Query: 460 ENFWNDWRKLLGK--NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DW K + + I++L CDF+ ++ + + E++K + EEK+ +KEE + +
Sbjct: 197 YNFFRDWVKTMNEEERRTIKSLSKCDFREMHQYFLKLSEERKNRTKEEKQKIKEENLQIQ 256
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+Y + I+DG K+++GNFR+EPPGLFRGRG HPKMG LKKRI P D+ IN KD +P
Sbjct: 257 NEYGYCILDGHKQRIGNFRIEPPGLFRGRGNHPKMGMLKKRIMPEDVIINCSKDSKVP-A 315
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN+VTWLA W + I FKY+ L SS LKG+ D +KYE AR L
Sbjct: 316 PPKGHKWKEVRHDNSVTWLACWTENIQ-NSFKYIMLNPSSRLKGEKDWKKYETARCLHKV 374
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y DF ++ RQ AVA Y IDKLALRAGNEKD+DEADTVGCC+L+ +++
Sbjct: 375 IDKIRADYRADFKHKEMRIRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRYEHIKL 434
Query: 698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
P ++FDFLGKDSI+Y N V V V+K + F KK+NDDLFD+L+T LN
Sbjct: 435 HEELNGQPYVVEFDFLGKDSIRYQNAVSVPKRVFKNVKLFLKNKKENDDLFDRLNTTVLN 494
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
+L+ELM GLTAKVFRTYNAS TL+ L + T D K+ Y RAN+ VA++CNHQR
Sbjct: 495 QYLRELMDGLTAKVFRTYNASRTLEEQLERLTNPDDPPHAKLLAYNRANRAVAVLCNHQR 554
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALER 871
+V K+ + M L +KI+ + + ++ + AK+ K +K +A E L++
Sbjct: 555 SVPKSFAKSMENLQKKIDAKREQISEITSE---AKQIKADYKNHKQASKK--VAYEKLKK 609
Query: 872 KMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAW 914
++A + K++ +++ K +AL TSK+NYLDPRI+VAW
Sbjct: 610 RLASAKEALSKLQLQATDRDENKEIALSTSKLNYLDPRISVAW 652
>gi|388579204|gb|EIM19531.1| putative DNA topoisomerase [Wallemia sebi CBS 633.66]
Length = 767
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/458 (49%), Positives = 305/458 (66%), Gaps = 11/458 (2%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG ++WTTL HNGV FPP Y LP V+M Y GK V L+ E EEVA +A +L +D+
Sbjct: 138 GDGTQRWTTLEHNGVFFPPEYVPLPKEVRMKYDGKNVELSLEAEEVAGFYAAVLGSDHAA 197
Query: 455 KPKFRENFWNDWRKLLGKN-----HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
F +NF+ND+ +L K+ IQ E CDF+PI D+ ++KEKKK M+ +EKKA
Sbjct: 198 DQVFNKNFFNDFLDILRKHPPLDGTKIQEFEKCDFQPIKDYLDQEKEKKKAMTRDEKKAA 257
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
KE++ + E+ + ++DG KEKVGNFR+EPP LFRGRG HP+ GKLK RI+P ITINIG
Sbjct: 258 KEQREEIEKPFTHCLLDGRKEKVGNFRIEPPSLFRGRGAHPRKGKLKLRIKPEQITINIG 317
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
+ +PE P G W V+HDNTVTWLA W + IN +KYV+LA S+LKGQSD K+E
Sbjct: 318 EGAKVPEAP-SGRKWGSVQHDNTVTWLAMWKENIN-GNYKYVYLAPGSTLKGQSDMSKFE 375
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK +I IR Y D ++ RQ A A YL+D+LALRAGNEK +DEADTVGCC+
Sbjct: 376 KARELKQHIGRIREDYEADLNNKVMYDRQRATAVYLVDRLALRAGNEKGEDEADTVGCCS 435
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQ-YVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLD 747
L+ +V PPN + FDFLGKDS++ Y +EV V+K + F+ K D +FD++
Sbjct: 436 LRCEHVMLRPPNLVTFDFLGKDSVRFYQEDIEVSPQVFKNLRIFKKEPKGPQDPIFDRIQ 495
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIIC 807
T LN + + M GL+AKVFRTYNASIT L +G VA K+ + RAN+ VAI+C
Sbjct: 496 TTVLNKYFGKFMKGLSAKVFRTYNASITFQEELQNTPKEGTVAEKLLAFNRANRNVAILC 555
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA 845
NHQ+ VSKTH A M ++ ++++ +K + +R L++
Sbjct: 556 NHQKNVSKTHGAAMDKMGDRLKAIKYQRRKIRQMLEQV 593
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 56/74 (75%)
Query: 873 MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 932
M + ++E + K+++K V+LGTSKINY+DPRITVAWCK ++VP+EK+F K+LL
Sbjct: 694 MQKIEDRLEAFRVNASNKDEIKDVSLGTSKINYIDPRITVAWCKEYDVPVEKVFAKTLLT 753
Query: 933 KFAWAMDVDPEFRF 946
KF WAM+ P+++F
Sbjct: 754 KFTWAMETTPDWKF 767
>gi|344299987|gb|EGW30327.1| hypothetical protein SPAPADRAFT_142998 [Spathaspora passalidarum
NRRL Y-27907]
Length = 781
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/440 (50%), Positives = 304/440 (69%), Gaps = 9/440 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG++KW +L HNGV+FPP Y LP VK+ Y GK VNL + EEVA +A ML+TD+ +
Sbjct: 155 DGEQKWESLEHNGVMFPPEYEPLPSHVKLYYDGKPVNLPLQAEEVAGFYAAMLETDHAKN 214
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NF++D+ ++L G I + DF +Y ++ +E+KK MS EEKK +K
Sbjct: 215 PVFQKNFFDDFCQVLKECGGCGVDINDFTKMDFSKMYAHFEKLREEKKLMSREEKKQIKL 274
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
EK + EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R++P D+T+N+G+D
Sbjct: 275 EKERLEEPYKTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVKPEDVTLNLGRD 334
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
V +PE P G W E++HDNTVTWLA W + I FKYV AASSS+KGQSD +K+E A
Sbjct: 335 VKVPEPP-AGHKWGEIRHDNTVTWLAMWKENI-ADSFKYVRFAASSSVKGQSDFKKFETA 392
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R L+++I +IR YT+ S RQ+A ATYLID ALRAG EK +DEADTVGCC+L+
Sbjct: 393 RNLRNHIDAIRKDYTEMLRSEKMQDRQMATATYLIDVFALRAGGEKGEDEADTVGCCSLR 452
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAK 750
++ PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 453 FEHITLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKEPKQPGDDLFDRINPSI 512
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
LN H + M GLTAKVFRTYNAS T+ L+ +G +A K+ + AN+ VAI+CNHQ
Sbjct: 513 LNKHFQNYMKGLTAKVFRTYNASKTMQDQLDLIPNEGTIAEKVVKFNAANRTVAILCNHQ 572
Query: 811 RTVSKTHSAQMSRLTEKIED 830
R+VSK H + ++++K+++
Sbjct: 573 RSVSKNHGTSVQKISDKLKE 592
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 12/122 (9%)
Query: 826 EKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMER 885
+K++ + + K+ R +L KKGKP + K N+ E L++++ A+
Sbjct: 671 DKLDKIDELEKEYRQEL---KKGKPEV--------KSNMTVEKLKQQVETIEARYVTTSL 719
Query: 886 DMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEF 944
+K KED V+LGTSK+NY+DPR+TV + K++ VPIEK+F K+L KF WA++ D +
Sbjct: 720 QLKDKEDNSEVSLGTSKMNYIDPRLTVMFSKKYGVPIEKLFTKTLRDKFKWAIESADENW 779
Query: 945 RF 946
RF
Sbjct: 780 RF 781
>gi|440639738|gb|ELR09657.1| hypothetical protein GMDG_04148 [Geomyces destructans 20631-21]
Length = 901
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 319/899 (35%), Positives = 456/899 (50%), Gaps = 169/899 (18%)
Query: 197 SEDDKPLSARLKGN------SKNV-NQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRF 249
S D PL+ R G+ SKN+ N+ ++ D A + V+++ P + +V + +
Sbjct: 5 SPDSAPLARRTNGSASRAKVSKNIDNEMEKSTNGDYAPAGVSIRNGPVTDEMDVDIPALN 64
Query: 250 PKSNAGTSGAKPI--------DSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKAS 301
K A S KP+ ++ KPLA + + + S +++ + S P+ R
Sbjct: 65 GKRKARVSTGKPVHYNDAASSSEEDNKPLAKRQRTSASKAKKDESDSDDAPIAR------ 118
Query: 302 SSGASSAKKPKVSDTS----KEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVT 357
S K P D S +E K+ + V +EKKA+ + ++ K P +K+S +
Sbjct: 119 --RKSGGKLPPSIDGSDFEQEEKKLAKEKVHIEKKAEKEAKSIRAKESKGKKPVIKESDS 176
Query: 358 NTAKATKSVSSSSNKINKK--------TKKVIKNSQYSKSTKML---------------- 393
+KS + +N K+ TKK+ K+
Sbjct: 177 EDEPISKSRAKKANGAKKEESDDDVPITKKIAAKKANGKAPVKTAVKAPVKKPAKGKAAK 236
Query: 394 ----------------------PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGK 429
P D KW TL HNGV+FPP Y LP VK++Y G
Sbjct: 237 KEESEEAEAEAEEDEEYRWWDAPNKDDDSIKWETLEHNGVVFPPDYEPLPKSVKLVYNGT 296
Query: 430 EVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLLGKNH----------VIQN 478
++L E EEVA F ML++ ++ P F++NF+ND+ ++L KN I+
Sbjct: 297 PISLHVEVEEVAGFFGAMLNSTLNVENPTFQKNFFNDFTEILAKNGGAKDKDGNKVAIKE 356
Query: 479 LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVE 538
DF I++++Q + E+KK S EKKA K K++ E Y++ DG KE+VGNFRVE
Sbjct: 357 FSKLDFSRIFEYYQGKSEEKKARSPAEKKADKAAKDELEAPYLYCTWDGRKERVGNFRVE 416
Query: 539 PPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAF 598
PP LFRGRGEHPK GK+KKR+ P ITINIG + +P P PG WKE+KHDN TWLA
Sbjct: 417 PPSLFRGRGEHPKTGKVKKRVMPEQITINIGPNATVP-TPPPGHKWKEIKHDNKATWLAM 475
Query: 599 WNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQ 658
W + IN +KYV LAA+S++KGQSD +K+EKAR+LK +I IR Y K S RQ
Sbjct: 476 WQENIN-GAYKYVMLAANSTVKGQSDFKKFEKARELKKHIDRIRKDYQKALKSELMADRQ 534
Query: 659 IAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVN 717
A A YLIDK ALRAGNEKD ++EA+TVGCC+LK +V PPN + FDFLGKDSI++ +
Sbjct: 535 RATAVYLIDKFALRAGNEKDSENEAETVGCCSLKFEHVTLKPPNTVIFDFLGKDSIRFYD 594
Query: 718 TVEVELPVYKAIGQF-QTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
V V+ V++ + F ++ K + DD+FD+L+T +LN HL MPGLTAKVFRTYNAS T+
Sbjct: 595 EVTVDPQVFRNLKIFKKSPKTEGDDIFDRLNTGQLNKHLANYMPGLTAKVFRTYNASYTM 654
Query: 777 DGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---K 832
+L + + + KI +Y N++VAI+CNH+RTV H AQM +LT++I+ L K
Sbjct: 655 STLLQELEATNTSLHEKIKLYNDCNRKVAILCNHKRTVGAGHEAQMGKLTDRIKGLKYQK 714
Query: 833 GVLKDLRVDLD---RAKKGKPPLMKDSDGKRKRNLAPEAL--ERKMAQTNAKIEK----- 882
K + +DLD + KKG D D ++ +A E + + K EK
Sbjct: 715 WRTKQMILDLDPKQKKKKGAEWFELDDDLTQEWIEEHQAFLVEEQRTKITKKFEKDNEKL 774
Query: 883 ---MERDMKTKEDLKTVALGTSK------------------------------INYLDPR 909
E++MK KE T LG ++ + +D R
Sbjct: 775 VAECEKEMKAKE--LTERLGAAEDLAKKLKKENKTKKVEAEGRTPSVEKLQAAVEKIDQR 832
Query: 910 IT------------------------------VAWCKRHEVPIEKIFNKSLLAKFAWAM 938
IT V + K+ +VPIEK F+K+L KF WA+
Sbjct: 833 ITTMNLQAEDREGNKEVALGTSKINYIDPRLTVVFAKKFDVPIEKFFSKTLREKFNWAI 891
>gi|312374595|gb|EFR22117.1| hypothetical protein AND_15747 [Anopheles darlingi]
Length = 529
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/500 (48%), Positives = 323/500 (64%), Gaps = 20/500 (4%)
Query: 422 VKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV--IQNL 479
VK Y G+E+ L+ EEVA +A MLD DY KP F ENF+ DWRK + ++ I++L
Sbjct: 34 VKFEYDGREMRLSEGAEEVAGFYARMLDHDYTSKPAFNENFFKDWRKTMTQSERERIKDL 93
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
C+F+P+ + E+ + + E+K ALK E + ++Y ++DG KEK+GNF++EP
Sbjct: 94 SKCNFRPMAAHFAQLAEQNRNRTKEQKAALKAENEQLMKEYGICVIDGHKEKIGNFKIEP 153
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
PGLFRGRGEHPKMG +K+R+ P D+ IN KD IP P PG WKEV+HDNTV+WLA W
Sbjct: 154 PGLFRGRGEHPKMGLVKRRVMPEDVIINCSKDSKIPVAP-PGHRWKEVRHDNTVSWLASW 212
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ + + KY+ L SS LKG+ D +KYE AR+L +I IR Y ++ S++ RQ
Sbjct: 213 TENVQG-QVKYIMLNPSSKLKGEKDWQKYETARRLLKHIDYIRDTYRDEWKSKEMRIRQR 271
Query: 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECI-----PPNKLKFDFLGKDSIQ 714
AVA Y IDKLALRAGNEKDDD+ADTVGCC+L+V ++E N + FDFLGKDSI+
Sbjct: 272 AVAMYFIDKLALRAGNEKDDDQADTVGCCSLRVEHIELHKELNGKENVVVFDFLGKDSIR 331
Query: 715 YVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASI 774
Y N VEVE V+K + F+ KK DDLFD+L+T+ LN +L+ LM LTAKVFRT+NAS
Sbjct: 332 YYNEVEVEKRVFKNLELFKENKKAGDDLFDRLNTSVLNDYLRNLMERLTAKVFRTFNASF 391
Query: 775 TLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKG 833
TL L + T + V K+ Y RAN+ VAI+CNHQR V KTH M L EKI +
Sbjct: 392 TLQKQLEELTDPNSSVPEKLLAYNRANRAVAILCNHQRAVPKTHEKSMGNLKEKIRVKRE 451
Query: 834 VLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDL 893
+ + +L KK ++D+ K K+ E L+ ++ K+E E D +++
Sbjct: 452 QVDQCQKELKDLKKSN---VRDASAKDKKTKQLERLKEQL----KKLELQETD---RDEN 501
Query: 894 KTVALGTSKINYLDPRITVA 913
KT+ALGTSK+NYLDPRI+VA
Sbjct: 502 KTIALGTSKLNYLDPRISVA 521
>gi|154309521|ref|XP_001554094.1| hypothetical protein BC1G_07231 [Botryotinia fuckeliana B05.10]
Length = 912
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 315/837 (37%), Positives = 437/837 (52%), Gaps = 127/837 (15%)
Query: 218 IGASKADAAISEVNVKTDPEDSD-DEVPLSSRFPKSNAGTSGAKPIDSDEKKPLA----S 272
IG KA VN K D S+ +EVPL+ R SN DSD+ PLA S
Sbjct: 78 IGNGKA------VNYKVDGSGSESEEVPLAKRQRTSNKKKVADS--DSDDDMPLAGRRNS 129
Query: 273 KVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKK 332
K+ S + S P+ L K +S A+K + +K+ K+ K E
Sbjct: 130 KLPPKVSAGAIGESSSDDEPLTVKLSKEKASIEKHAEKEAKALRAKKAAPKKAIKKEE-- 187
Query: 333 ADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKT--KKVIKNSQYSKST 390
+D D+ + +R N A K + K S S + KK KKV + T
Sbjct: 188 SDSDEDVAPKRRKPNGAVPAKPTTKKANGVKKEESDSDAPLAKKAAPKKVNGKVKAEPDT 247
Query: 391 KM------------------LPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
K+ P D KW TL HNGV+FPP Y LP VK+ Y G
Sbjct: 248 KVKAKKDESEEADEVYRWWDAPKKEDDSIKWETLQHNGVVFPPEYEPLPKNVKLRYDGIP 307
Query: 431 VNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVIQNL 479
+ L+ E EE+A F ML++ + ++ P F++NF+ D+ + G I++
Sbjct: 308 LTLSLESEEIAGFFGAMLNSTHNVENPTFQKNFFKDFTDSVKKTGGAKDKEGNKVAIKDF 367
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
DFKPI++++ + ++K S+ EKKA K K++ E Y I DG KE VGNFRVEP
Sbjct: 368 SKLDFKPIFEYYDGKSTERKARSAAEKKAEKALKDEAEAPYKTCIWDGRKEDVGNFRVEP 427
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
PGLFRGRGEHPK GK+K R+ P ITINIGKD +P P G WK ++HDN TWLA W
Sbjct: 428 PGLFRGRGEHPKTGKVKLRVTPEQITINIGKDATVP-SPPEGHKWKAIQHDNKATWLAMW 486
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ IN +KYV LAA SS+KGQSD +K+EKAR+LK++I IR YT+D + RQ
Sbjct: 487 QENIN-GAYKYVMLAAKSSIKGQSDFKKFEKARELKEHIDRIRKDYTQDLKAELMADRQR 545
Query: 660 AVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNT 718
A A YLIDK ALRAGNEKD ++EA+TVGCC+LK +V PPN + FDFLGKDSI++ +
Sbjct: 546 ATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRFYDE 605
Query: 719 VEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLD 777
V V+ V+K + F+ K+N DD+FD+L+T +LN HL MPGL+AKVFRTYNAS T+
Sbjct: 606 VTVDPQVFKNLKIFKKAPKKNGDDIFDRLNTTQLNKHLTNYMPGLSAKVFRTYNASWTMS 665
Query: 778 GMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KG 833
+L K D + KI +Y N++VAI+CNH+RTV +H A + ++ + ++ L K
Sbjct: 666 DLLKKLKNSDISMQEKIKLYNDCNRKVAILCNHKRTVGASHEAAIEKMDDAVKGLKYQKW 725
Query: 834 VLKDLRVDLD---RAKKGKPPLMKDSDGKRKRNLAPEA---------LERKMAQTNAK-I 880
LK + +D+D + KKG D + +A +E+K A+ N K +
Sbjct: 726 RLKQMILDIDPKQKKKKGADWFALDEELDESWIQEHQAFLVAQERIKIEKKFAKENEKLV 785
Query: 881 EKMERDMKTKE---------DLK-------------------TVALGTSKINYLDPRI-- 910
+ +++MKTKE DL+ +V + I +D RI
Sbjct: 786 SEGQKEMKTKELNERLHAATDLEKKFKKENKTKKVEAEGKGPSVDKFEANITKIDERIAN 845
Query: 911 ----------------------------TVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
TV + ++ +VPIEK F+K+L KFAWA+D
Sbjct: 846 MLLKREDREGNKEVALGTSKINYIDPRLTVVFSQKFDVPIEKFFSKTLREKFAWAID 902
>gi|145530640|ref|XP_001451092.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418736|emb|CAK83695.1| unnamed protein product [Paramecium tetraurelia]
Length = 596
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/559 (42%), Positives = 346/559 (61%), Gaps = 22/559 (3%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W L H+GV+FPP Y H V ++Y GK + LT EQEE+ T +A + + Y K +R+NF
Sbjct: 45 WRYLEHHGVLFPPFYKRHNVGLIYNGKLITLTEEQEELCTYWAQSIGSPYENKEIYRKNF 104
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMW 522
L+ L+ DF I ++ ++Q+ + S E+KK K E++++E Y +
Sbjct: 105 ----ESLMQTKFEGFQLDKADFTKIKEYLEQQRLLRLNKSDEQKKQEKLERDQRELFYGY 160
Query: 523 AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGE 582
A+VDG E+VGN+ +E P LF+GRGEHPK G LK RI P ++T+N+ P+P+C +PG
Sbjct: 161 ALVDGCLERVGNYTLEQPTLFKGRGEHPKAGLLKARIFPEELTVNLSTQAPVPQCKLPGH 220
Query: 583 SWKEVKHDNTVTWL-AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSI 641
SW ++ H N VTWL ++ + I KYV AA+S K +D+ KYEKAR+LK+ I I
Sbjct: 221 SWGKIVHRNDVTWLFSYVDSSIRKDNHKYVQFAATSRFKQMNDKRKYEKARRLKNQIDQI 280
Query: 642 RAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPN 701
R YTK S RQ+ ATYLIDKLALR GNEKD+DEADTVGCC+L+V +++ +
Sbjct: 281 RENYTKKLQSDSIKERQLGTATYLIDKLALRVGNEKDEDEADTVGCCSLRVEHIKLKEDD 340
Query: 702 KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPG 761
+ FDFLGKDS++Y N V++ ++K + F GK+ D+LF + LN LK+ M G
Sbjct: 341 VVAFDFLGKDSMRYNNEVKLAHQIWKNLKLFIKGKQPEDNLFSDISVDDLNDFLKKQMEG 400
Query: 762 LTAKVFRTYNASITLDGMLNKGTG-DGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSA 819
LTAKVFRTYNAS TL L+ G DG V K+D Y ANK+VAI+CNHQ+T+SK
Sbjct: 401 LTAKVFRTYNASFTLQQQLDLGGKLDGHSVQQKVDFYDNANKQVAILCNHQKTISKQFEL 460
Query: 820 QMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP----PLMKDSDGKRKRNL--------APE 867
++ K+E +K +++L KK P ++ +G +K+N +
Sbjct: 461 TKKKINTKLECMKTYIQELE---QHYKKKNPNEYEEEVQLEEGSQKKNSIFIKKFPGQHD 517
Query: 868 ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
+++ + +T K +K + ++ KE+ K +ALGTSK NY DPRI+VA+CK H+VPIE++F+
Sbjct: 518 KIKQTIQKTQEKYQKELKGLEKKEENKEIALGTSKTNYNDPRISVAFCKVHDVPIERVFS 577
Query: 928 KSLLAKFAWAMDVDPEFRF 946
K+L KF WAM D ++F
Sbjct: 578 KTLRNKFIWAMATDSNWKF 596
>gi|410081714|ref|XP_003958436.1| hypothetical protein KAFR_0G02700 [Kazachstania africana CBS 2517]
gi|372465024|emb|CCF59301.1| hypothetical protein KAFR_0G02700 [Kazachstania africana CBS 2517]
Length = 754
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/443 (51%), Positives = 303/443 (68%), Gaps = 11/443 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW +L+HNGV+FPP Y LP +K+ Y GK V+L + EEVA +A +L+TD+ +
Sbjct: 125 DDTIKWHSLIHNGVLFPPDYNPLPAHIKLYYDGKPVDLPLDAEEVAGFYAALLETDHGKN 184
Query: 456 PKFRENFWNDWRKLLGK------NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N I++ E CDF I+ + Q QK++KKQ+S++E+K L
Sbjct: 185 PVFQKNFFNDFLQVLKETGGTLNNVEIKDFEKCDFSKIHAFFQLQKDQKKQLSAQERKQL 244
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ EK K EE + + +DG KE+VGNFRVEPP LFRGRG HPK GKLK+R+ DI +N+
Sbjct: 245 RLEKEKFEEPFKFCELDGRKEQVGNFRVEPPDLFRGRGAHPKTGKLKRRVHAEDIVLNLS 304
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
K+ PIP P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 305 KNAPIPPPP-EGHRWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 362
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK +I +IR Y K+ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 363 KARQLKSHIDAIRKDYRKNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 422
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 423 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLAIFKRPPKQPGHQLFDRLDP 482
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA K+ Y AN+ VAI+CN
Sbjct: 483 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKLLKYNAANRTVAILCN 542
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL 831
HQRTV+K H+ + R KI++L
Sbjct: 543 HQRTVTKGHALSVERANMKIKEL 565
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 8/77 (10%)
Query: 878 AKIEKMER-------DMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+IEK+E+ +K KE+ V+LGTSK+NY+DPR++V +CK++ VPIEKIF K+L
Sbjct: 678 TQIEKLEQRIQISSIQLKDKEENSEVSLGTSKVNYIDPRLSVVFCKKYNVPIEKIFTKAL 737
Query: 931 LAKFAWAMD-VDPEFRF 946
KF WA++ VD E+RF
Sbjct: 738 RDKFKWAIESVDEEWRF 754
>gi|449298971|gb|EMC94985.1| hypothetical protein BAUCODRAFT_34984 [Baudoinia compniacensis UAMH
10762]
Length = 903
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/455 (51%), Positives = 312/455 (68%), Gaps = 18/455 (3%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGV+FPP Y LP VKMLY G V + P+ EE+A F ML++
Sbjct: 261 PAKGDGTIKWTTLEHNGVVFPPEYEPLPKHVKMLYDGVPVTMHPDAEEIAYGFGSMLNST 320
Query: 452 Y-MQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ D++++L K N V I E CDFKPI+D+ +++ KK
Sbjct: 321 HNVENPTFQKNFFGDFKEMLDKTKHAKDKDGNSVKITKFEKCDFKPIFDYVDAERQAKKA 380
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKK LK EK+++E YM+ + DG K+KVGNFRVEPPGLFRGRGEHPK GK KKR+Q
Sbjct: 381 LPAAEKKKLKAEKDEKEAPYMYCMWDGRKQKVGNFRVEPPGLFRGRGEHPKTGKWKKRVQ 440
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P+ P G WKEVKHD TWL W + IN +KYV LAA+S +K
Sbjct: 441 PEQITINIGKEAMVPKPP-EGHKWKEVKHDQEGTWLVMWQENIN-GAYKYVMLAANSDIK 498
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR YTK+ + RQ A A YLID+ ALRAGNEK +D
Sbjct: 499 GQSDYKKFEKARELKKHIGRIRDDYTKELKDEEMVVRQRATAVYLIDQFALRAGNEKGED 558
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+LK +V PP+ + FDFLGKDSI++ + V+V+ V+K + F+ K
Sbjct: 559 EADTVGCCSLKFEHVTLRPPDTVIFDFLGKDSIRFYDEVKVDPQVFKNLKIFKRAPKTDG 618
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG--DVAVKIDVYQ 797
DD+FD+L T+ LN HL + MPGLTAKVFRTYNAS T+ +L K D +A ++ Y
Sbjct: 619 DDIFDRLTTSGLNKHLSKYMPGLTAKVFRTYNASWTMATLLQKMKPDKAMSIAERVKEYN 678
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
AN++VAI+CNH+RTV+ +H+A M +L +K+ L+
Sbjct: 679 DANRKVAILCNHKRTVAASHAATMEKLGDKVNGLR 713
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 846 KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINY 905
K GK + S K A E LE ++A K E +E+ K VALGTSKINY
Sbjct: 809 KGGKIEVEGKSASVEKLEAAVEKLEGRIANEKVKGE-------DRENNKEVALGTSKINY 861
Query: 906 LDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+DPR+TV + K+ +VPIE+ F+K+L KF WA+ VD ++ F
Sbjct: 862 IDPRLTVVFSKKFDVPIERFFSKTLREKFDWAIKSVDEDWDF 903
>gi|302916741|ref|XP_003052181.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733120|gb|EEU46468.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 919
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 288/696 (41%), Positives = 399/696 (57%), Gaps = 75/696 (10%)
Query: 191 KSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSR-- 248
K +D+DSED PL+ R + N + ++E DSDDE + +R
Sbjct: 91 KDNDSDSEDGAPLAKRQRQNKR--------------VAE-------SDSDDEPIMKARGK 129
Query: 249 -FPKSNAGTSGAKPIDSDEKKPLASK-VQQNGSTSRETQQKSSSVP----VKRPLQKASS 302
P S T A P SD+ +PL K VQ+ + R +++ ++ K+P K S
Sbjct: 130 KLPPSYKET--ALPESSDDDQPLGQKLVQKKAAIERRADKEAKAIRAKERTKKPTPKKSI 187
Query: 303 SGASSAKKPKVSDTSKEVKVKQVTVKVE----KKADDDDHIPISQRMKNSAPSVKKSVTN 358
S ++ ++ + K + KKA+ D PIS+++K SAP+
Sbjct: 188 MEESDDDDVPLAKSTNRRQSNGTAAKRKSNGVKKAESDSDAPISKKVK-SAPA------- 239
Query: 359 TAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY- 417
K K+ S + +K K++ + + + + P D KW TL HNGV+FPP Y
Sbjct: 240 -KKGAKADSKTDSKKAKESGEEEEEFAWW----LEPKKEDDSIKWNTLEHNGVLFPPEYE 294
Query: 418 -LPHGVKMLYKGKEVNLTPEQEEVATMFAVML---DTDYMQKPKFRENFWNDWRKLL--- 470
+P +K++Y GK VNL PE EEVAT + M+ + +M+ P FR+NF+ D+++
Sbjct: 295 PMPKHIKLIYDGKPVNLAPEVEEVATFWVAMMTPASSHHMENPVFRKNFFEDFQEYCKKY 354
Query: 471 ------GKNHVIQNLEGCDFKPIYDW--HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMW 522
GK I++L+ CDF + D+ + ++ K K M+ EEK+A K +K E +
Sbjct: 355 GVTDADGKKVQIKSLDKCDFTKLADYWLAKAEQNKTKNMTKEEKEAAKAKKEALEAPFTH 414
Query: 523 AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGE 582
+ DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+ P ITINIGK IP+ P G
Sbjct: 415 CMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGKVKNRVTPEQITINIGKGAKIPDPP-KGH 473
Query: 583 SWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIR 642
WK V+HD TWLA W + IN +KYV L A+S +KGQSD +K+EKAR+LK +I IR
Sbjct: 474 QWKAVQHDQKATWLAMWQENIN-NNYKYVMLGAASDIKGQSDFKKFEKARELKKHIDRIR 532
Query: 643 AAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPN 701
YTK+ S RQ A A YLID+LALRAGNEKD ++EADTVGCC+LK ++ PPN
Sbjct: 533 KDYTKELKSEVMADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITLEPPN 592
Query: 702 KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMP 760
K+ FDFLGKDSI Y T VE V+K + F+ K + DDLFD+L T +LN HL MP
Sbjct: 593 KVTFDFLGKDSIPYRETAHVEPQVFKNLKLFKKAPKTKGDDLFDRLTTTQLNKHLTNYMP 652
Query: 761 GLTAKVFRTYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVSKT 816
GLTAKVFRTYNAS T+ +L + D G VA K+ +Y N+EVAI+CNH+RTV
Sbjct: 653 GLTAKVFRTYNASFTMSELLKGLSKDPRSRGSVAEKVKLYNDCNREVAILCNHKRTVGAG 712
Query: 817 HSAQMSRLTEKIEDLK---GVLKDLRVDLDRAKKGK 849
H QM +L ++I+ L+ K + +D+D +K K
Sbjct: 713 HEQQMQKLGDRIKGLRYQQWRTKKMILDIDPTQKKK 748
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%)
Query: 873 MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 932
+ + + +++ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+L
Sbjct: 843 IEKLDERVKVLETQAEDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRD 902
Query: 933 KFAWAM 938
KF WA+
Sbjct: 903 KFRWAI 908
>gi|347838289|emb|CCD52861.1| similar to DNA topoisomerase I [Botryotinia fuckeliana]
Length = 896
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 315/837 (37%), Positives = 437/837 (52%), Gaps = 127/837 (15%)
Query: 218 IGASKADAAISEVNVKTDPEDSD-DEVPLSSRFPKSNAGTSGAKPIDSDEKKPLA----S 272
IG KA VN K D S+ +EVPL+ R SN DSD+ PLA S
Sbjct: 62 IGNGKA------VNYKVDGSGSESEEVPLAKRQRTSNKKKVADS--DSDDDMPLAGRRNS 113
Query: 273 KVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKK 332
K+ S + S P+ L K +S A+K + +K+ K+ K E
Sbjct: 114 KLPPKVSAGAIGESSSDDEPLTVKLSKEKASIEKHAEKEAKALRAKKAAPKKAIKKEE-- 171
Query: 333 ADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKT--KKVIKNSQYSKST 390
+D D+ + +R N A K + K S S + KK KKV + T
Sbjct: 172 SDSDEDVAPKRRKPNGAVPAKPTTKKANGVKKEESDSDAPLAKKAAPKKVNGKVKAEPDT 231
Query: 391 KM------------------LPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
K+ P D KW TL HNGV+FPP Y LP VK+ Y G
Sbjct: 232 KVKAKKDESEEADEVYRWWDAPKKEDDSIKWETLQHNGVVFPPEYEPLPKNVKLRYDGIP 291
Query: 431 VNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL----------GKNHVIQNL 479
+ L+ E EE+A F ML++ + ++ P F++NF+ D+ + G I++
Sbjct: 292 LTLSLESEEIAGFFGAMLNSTHNVENPTFQKNFFKDFTDSVKKTGGAKDKEGNKVAIKDF 351
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
DFKPI++++ + ++K S+ EKKA K K++ E Y I DG KE VGNFRVEP
Sbjct: 352 SKLDFKPIFEYYDGKSTERKARSAAEKKAEKALKDEAEAPYKTCIWDGRKEDVGNFRVEP 411
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
PGLFRGRGEHPK GK+K R+ P ITINIGKD +P P G WK ++HDN TWLA W
Sbjct: 412 PGLFRGRGEHPKTGKVKLRVTPEQITINIGKDATVP-SPPEGHKWKAIQHDNKATWLAMW 470
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ IN +KYV LAA SS+KGQSD +K+EKAR+LK++I IR YT+D + RQ
Sbjct: 471 QENIN-GAYKYVMLAAKSSIKGQSDFKKFEKARELKEHIDRIRKDYTQDLKAELMADRQR 529
Query: 660 AVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNT 718
A A YLIDK ALRAGNEKD ++EA+TVGCC+LK +V PPN + FDFLGKDSI++ +
Sbjct: 530 ATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRFYDE 589
Query: 719 VEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLD 777
V V+ V+K + F+ K+N DD+FD+L+T +LN HL MPGL+AKVFRTYNAS T+
Sbjct: 590 VTVDPQVFKNLKIFKKAPKKNGDDIFDRLNTTQLNKHLTNYMPGLSAKVFRTYNASWTMS 649
Query: 778 GMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KG 833
+L K D + KI +Y N++VAI+CNH+RTV +H A + ++ + ++ L K
Sbjct: 650 DLLKKLKNSDISMQEKIKLYNDCNRKVAILCNHKRTVGASHEAAIEKMDDAVKGLKYQKW 709
Query: 834 VLKDLRVDLD---RAKKGKPPLMKDSDGKRKRNLAPEA---------LERKMAQTNAK-I 880
LK + +D+D + KKG D + +A +E+K A+ N K +
Sbjct: 710 RLKQMILDIDPKQKKKKGADWFALDEELDESWIQEHQAFLVAQERIKIEKKFAKENEKLV 769
Query: 881 EKMERDMKTKE---------DLK-------------------TVALGTSKINYLDPRI-- 910
+ +++MKTKE DL+ +V + I +D RI
Sbjct: 770 SEGQKEMKTKELNERLHAATDLEKKFKKENKTKKVEAEGKGPSVDKFEANITKIDERIAN 829
Query: 911 ----------------------------TVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
TV + ++ +VPIEK F+K+L KFAWA+D
Sbjct: 830 MLLKREDREGNKEVALGTSKINYIDPRLTVVFSQKFDVPIEKFFSKTLREKFAWAID 886
>gi|320582441|gb|EFW96658.1| DNA topoisomerase, putative [Ogataea parapolymorpha DL-1]
Length = 761
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/578 (44%), Positives = 360/578 (62%), Gaps = 26/578 (4%)
Query: 334 DDDDHIPISQRMKNSA-----PSVKKSVTNTAKAT---KSVSSSSNKINK----KTKKVI 381
D+ + +P+ +R NS P VKK ++A + KS S KI K K K
Sbjct: 50 DETEDVPLKKRKTNSKATQSRPRVKKESQSSASVSPRKKSQQSKEPKIKKEDTPKVKTED 109
Query: 382 KNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEE 439
+ + K + + W TL HNGVIFPP Y LP VK++Y K V+L P EE
Sbjct: 110 EAEEEEKYKWWEQQDLNDEIVWDTLEHNGVIFPPDYEPLPSHVKLIYDKKPVSLPPAAEE 169
Query: 440 VATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN-----HVIQNLEGCDFKPIYDWHQEQ 494
VA FA +L++D+ + P F++NF+ D+ ++L +N I E CDF ++++ Q+Q
Sbjct: 170 VAGFFAALLESDHAKNPTFQKNFFADFLEVLKENGGCPDAEITEFEKCDFSQMFEYFQKQ 229
Query: 495 KEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 554
KE+KK +S +EKK +K+EK K EEKY + +++G KE+VGNFRVEPPGLFRGRG HPK GK
Sbjct: 230 KEEKKAISPQEKKRIKQEKEKMEEKYKFCLLNGRKEQVGNFRVEPPGLFRGRGAHPKTGK 289
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
LKKR+QP DIT+N+ KD PIP P G W E+KHDNTV WLA W + + KYV A
Sbjct: 290 LKKRVQPEDITLNLSKDAPIPPPP-EGHQWGEIKHDNTVAWLAMWRENV-LGSVKYVRFA 347
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
+SSLKG SD +K+EKAR+LK+ I +IR Y S RQ+A ATYLID ALRAG
Sbjct: 348 QNSSLKGMSDFKKFEKARELKNCIDAIRKDYRAKLKSELMMDRQLATATYLIDVFALRAG 407
Query: 675 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF-Q 733
EK +DEADTVGCC+L+ ++ PPN + FDFLGKDSI++ VEV+ V+K + F +
Sbjct: 408 GEKSEDEADTVGCCSLRYEHIFLKPPNTVVFDFLGKDSIRFYQEVEVDPQVFKNLRIFKK 467
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
+ KK D+LFD++D + LN + + +PGLTAKVFRTYNAS T+ ++ +G V K+
Sbjct: 468 SPKKPGDNLFDRIDPSVLNKYFQSYLPGLTAKVFRTYNASKTMQDQIDLIKNEGTVNEKV 527
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAKKGKP 850
+ AN+ VAI+CNHQRTVSK H A + ++ EKIE++ K VLK + + D++ + K
Sbjct: 528 VKFNAANRTVAILCNHQRTVSKNHEAGVQKINEKIEEMIWRKIVLKRMMLQQDKSLRKKD 587
Query: 851 PLMKDSDGKRKRNLAPEALERKMAQTNAKIEK-MERDM 887
+ + + +ER + + KIEK ER++
Sbjct: 588 FKYFEEIDDMSKEEEQKIIERVLQKEKEKIEKRYEREL 625
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E L++++ + +I+ +K KED VAL TSKINY+DPR+TV + K+ EVPIEK+F
Sbjct: 681 EKLQQQVEKIETRIKNTSLQLKDKEDNSQVALNTSKINYIDPRLTVMFSKKFEVPIEKLF 740
Query: 927 NKSLLAKFAWAMD-VDPEFRF 946
K+L KFAWA++ D +RF
Sbjct: 741 TKTLREKFAWAIESADENWRF 761
>gi|324502181|gb|ADY40962.1| DNA topoisomerase 1 [Ascaris suum]
Length = 624
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/440 (51%), Positives = 286/440 (65%), Gaps = 17/440 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F P Y LP V Y G + L+PE EEVAT +A MLD +Y K F
Sbjct: 184 KWNSLSHKGPVFAPDYVPLPDDVVFKYDGNVIKLSPEAEEVATFYAKMLDHEYTTKDAFN 243
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + + I LE CDF+P+ Q+ E++K MS EEK+ LKE K +
Sbjct: 244 NNFFKDWRKTMTAAERETITELEKCDFRPMAAHFQKLSEERKAMSKEEKQKLKEAKEAEM 303
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y +A++DG ++K+GNFR+EPPGLFRGRG HPKMG+LKKR++P D+ IN KD IP
Sbjct: 304 KIYGYAVIDGHRQKIGNFRIEPPGLFRGRGGHPKMGRLKKRVRPEDVIINCSKDSEIP-V 362
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EK+E AR+LK
Sbjct: 363 PPEGHKWKEVRHDNTVTWLCSWTENVLGQN-KYIMLNPSSKIKGEKDYEKFETARRLKSR 421
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA YT DF S++ RQ AVA Y IDKLALRAGNEKD DE ADTVGCC+L+ +++
Sbjct: 422 VDDIRAVYTADFKSKEMRIRQRAVALYFIDKLALRAGNEKDVDEVADTVGCCSLRCEHIK 481
Query: 697 CIPPNKL-------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
KL +FDF GKDSI+Y N V VE V+ + F K DDLFD+LDT
Sbjct: 482 L--HEKLDDKDYVVEFDFPGKDSIRYYNKVPVEKRVFNNLKLFMENKDPGDDLFDRLDTT 539
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD-GDVAVKIDVYQRANKEVAIICN 808
LN HL+ LMPGLT KVFRTYNASITL L K T + G V + Y RAN++VAI+CN
Sbjct: 540 TLNQHLQSLMPGLTVKVFRTYNASITLQQQLEKLTKEGGSVQENLLSYNRANRQVAILCN 599
Query: 809 HQRTVSKTHSAQMSRLTEKI 828
HQR V K+H M L+ KI
Sbjct: 600 HQRAVPKSHEKSMENLSAKI 619
>gi|156368098|ref|XP_001627533.1| predicted protein [Nematostella vectensis]
gi|156214446|gb|EDO35433.1| predicted protein [Nematostella vectensis]
Length = 502
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/519 (48%), Positives = 338/519 (65%), Gaps = 43/519 (8%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
ML+ DY K F +NF++DWRK + + I++L+ CDFK ++ + + + E++K M+ E
Sbjct: 1 MLEHDYTSKEIFNKNFFSDWRKEMTEEERKHIKDLKNCDFKEMHKYFEMKNEERKNMTKE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK +K++ + +Y + ++D K++VGNF++EPPGLFRGRG+HPK GKLKKR+ P ++
Sbjct: 61 EKLEIKKKNEEILNEYGFCMMDHHKQRVGNFKIEPPGLFRGRGDHPKQGKLKKRVMPEEV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGKD +P+ P G WK+V D+TVTWLA W + I +KYV L +S LKG+ D
Sbjct: 121 TINIGKDAKVPD-PPAGHKWKKVICDDTVTWLACWIENIQG-SYKYVMLNPTSRLKGEKD 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
KYE ARKLK+ + IR Y KD+ S++ RQ VA Y IDKLALRAG+EKDDD ADT
Sbjct: 179 WRKYETARKLKECVDKIREDYRKDWKSKEMRLRQRGVALYFIDKLALRAGHEKDDDTADT 238
Query: 685 VGCCTLKVGNV---------ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
VGCC+L+V ++ EC+ ++FDFLGKDS++Y N V +E +K + F G
Sbjct: 239 VGCCSLRVEHIKLHEEWEDKECV----VEFDFLGKDSVRYRNFVPIEKRAFKNMKLFMEG 294
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKID 794
K++ DDLFD+L T +N +L ELM GL+AKVFRT+NAS+TL L K T + +V KI
Sbjct: 295 KQEGDDLFDRLTTTSVNKYLSELMEGLSAKVFRTFNASLTLQDQLQKLTNPEDNVNAKIL 354
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGV-------LKDLRVDLDRAKK 847
Y RAN+ VAI+CNHQRT KT MS L KI D K LK LRV +AK+
Sbjct: 355 SYNRANRAVAILCNHQRTAPKTFEKSMSNLQLKISDKKKTVKEAKKELKALRV---KAKE 411
Query: 848 GKPPLMKDSDGKRKRNLAPEALERKMAQTN---AKIEKMERDMKTKEDLKTVALGTSKIN 904
K +S+ K A+E+K AQ ++ K+E KE+ K +ALGTSK+N
Sbjct: 412 SKS----ESNNK--------AVEKKKAQVQRLEEQLFKLEVTATDKEENKEIALGTSKLN 459
Query: 905 YLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE 943
YLDPRITVAWCK+ EVPIEK +NK+ KFAWA+D+ E
Sbjct: 460 YLDPRITVAWCKKFEVPIEKAYNKTQREKFAWAIDMAGE 498
>gi|147906312|ref|NP_001089537.1| topoisomerase (DNA) I, gene 2 [Xenopus laevis]
gi|66910831|gb|AAH97824.1| MGC115546 protein [Xenopus laevis]
Length = 503
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/510 (48%), Positives = 329/510 (64%), Gaps = 17/510 (3%)
Query: 447 MLDTDYMQKPKFRENFWNDWRK--LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR NF+ DWRK L + VI +L+ CDF ++ +++ + E+KK S E
Sbjct: 1 MLDHEYTTKEIFRNNFFVDWRKEMTLEEKMVITDLDKCDFTEMFTYYKGKMEEKKNKSKE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
+K +KEE K E+Y + +D +EK+GNF++EPP LFRGRG+HPK G LKKRI P DI
Sbjct: 61 DKLKIKEENEKLLEEYGYCAMDHHREKIGNFKIEPPALFRGRGDHPKQGMLKKRILPEDI 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN KD IPE P PG WKEV+HDNTVTWLA W + + KY+ L A+S LKG+ D
Sbjct: 121 IINCSKDSKIPEPP-PGHKWKEVRHDNTVTWLASWTENVQG-SVKYIMLNANSKLKGEKD 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-AD 683
EKYE ARKLK + IR Y ++F S++ RQ AVA Y IDKLALRAGNEK++ E AD
Sbjct: 179 WEKYEIARKLKHHAEKIRKTYRENFKSKEMKVRQRAVALYFIDKLALRAGNEKEEGESAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +++ P + ++FDFLGKDSI+Y N V VE V+K + F K++
Sbjct: 239 TVGCCSLRVEHIKLYPELDGEKHVVEFDFLGKDSIRYYNKVPVEKQVFKNLQLFMENKEE 298
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQ 797
DDLFD+L+T LN HL+ LM GLTAKVFRTYNASITL L + T + + KI Y
Sbjct: 299 GDDLFDRLNTPLLNKHLQSLMEGLTAKVFRTYNASITLQQQLQELTDPEESIPAKILSYN 358
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
RAN+ VAI+CNHQR KT M+ L KI+ K ++ L + + +
Sbjct: 359 RANRAVAILCNHQRAPPKTFDQSMANLKSKID-----AKKEQILLAKKELKEAKKEAKEK 413
Query: 858 GKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K N E+ +R + +T ++ +ME +E+ K +AL TSK+NYLDPRI+VAWCK+
Sbjct: 414 DSEKLNKVVESKKRAVQRTEEQLMRMEVQATDREENKQIALSTSKLNYLDPRISVAWCKK 473
Query: 918 HEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
V +EKI+NK+ KFAWA+D+ + +F F
Sbjct: 474 WTVGLEKIYNKTYRDKFAWAIDMTETDFIF 503
>gi|299751938|ref|XP_001830595.2| topoisomerase I [Coprinopsis cinerea okayama7#130]
gi|298409603|gb|EAU91226.2| topoisomerase I [Coprinopsis cinerea okayama7#130]
Length = 853
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/414 (55%), Positives = 295/414 (71%), Gaps = 10/414 (2%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
+GDG +KW TL HNGV FPPPY LP VKM Y GK+V+L+ E EEVA + +L+TD+
Sbjct: 251 NGDGTQKWETLEHNGVYFPPPYEALPKHVKMKYNGKDVDLSIEAEEVAGFYGALLETDHA 310
Query: 454 QKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
+ F +NF+ D++K+L K I E CDF+P++++ + +K K+K M++EEKKA
Sbjct: 311 KDATFNKNFFTDFKKVLEKYPPRCGTKITTFELCDFRPMFEYFEAEKAKRKAMTNEEKKA 370
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K++K++ EEKY ++DG KEKVGNFR+EPPGLFRGRGEHPK G LKKR+ P DITINI
Sbjct: 371 AKKKKDELEEKYKTCVMDGRKEKVGNFRIEPPGLFRGRGEHPKKGSLKKRVYPEDITINI 430
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
GK+ IP IPG+ WK+V HDNTVTWLA W + IN KYVFLAA S LKGQSD +K+
Sbjct: 431 GKEAKIPVPNIPGK-WKKVIHDNTVTWLATWTENIN-NSHKYVFLAAGSRLKGQSDMQKF 488
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
EKAR+LKD+I IRA YT+D ++ RQ A A Y IDKLALRAGNEK +DEADTVGCC
Sbjct: 489 EKARELKDHIEKIRADYTEDLRNKVMAHRQRATAMYFIDKLALRAGNEKGEDEADTVGCC 548
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+L+ +V PPN++ FDFLGKDSI+Y V V+ V+K I F+ GK+ D+LFD++ T
Sbjct: 549 SLRCEHVTLRPPNEIVFDFLGKDSIRYFKEVPVDAQVFKNIRIFKEGKELEDNLFDRVTT 608
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLN-KGTGDGDVAVKIDVYQRANK 801
A LN HL M GLTAKVFRTYNAS T +L+ + + + KI+ Y +AN+
Sbjct: 609 AGLNKHLTSYMKGLTAKVFRTYNASSTFQRLLDEEDLTNATIQEKINAYNKANR 662
>gi|322701021|gb|EFY92772.1| topoisomerase I [Metarhizium acridum CQMa 102]
Length = 909
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 284/666 (42%), Positives = 385/666 (57%), Gaps = 61/666 (9%)
Query: 217 GIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQ- 275
G+ K+ +IS+V+ + D DSD E PL+ R P+S+A +P+DSD SKV+
Sbjct: 64 GVNKRKSRTSISKVSYR-DESDSDGE-PLAKR-PRSSA-----RPVDSDSDNEPISKVKA 115
Query: 276 QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADD 335
+ STS P+ L K ++ A + SKE + K K +
Sbjct: 116 KKKSTSMLADSSDDEKPLGIQLAKKKAAIEKKAAHEAQTIRSKEANSAKSAPKKNIKEES 175
Query: 336 DDHIPISQ-----RMKNSAPSVKKS--------------------VTNTAKATKSVSSSS 370
DD P+++ R N AP+ +KS T +K S+++
Sbjct: 176 DDE-PLAKSSANKRQSNGAPAKRKSNGVKKEESDSDAPISKKTKAKGKTTAPSKGKSAAA 234
Query: 371 NKINKKTK-KVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYK 427
K +KK K K + P D KW TL HNGV+F P Y LP VK+LY
Sbjct: 235 TKDSKKAKAKETSEEEEEYEWWNAPKPEDDSIKWQTLEHNGVLFAPEYEPLPKNVKLLYD 294
Query: 428 GKEVNLTPEQEEVATMFAVML---DTDYMQKPKFRENFWNDWRKLLGKNH---------- 474
GK V L+ E EEVAT + M+ + ++ P FR NF+ D+ +++ KN
Sbjct: 295 GKPVTLSKEAEEVATFWVAMMTPASSHHLDNPVFRNNFFTDFSEIVKKNGGATDREGNKV 354
Query: 475 VIQNLEGCDFKPIYDWHQEQKE--KKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKV 532
I++L+ CDF IYD+ + E K K +S EEK+A K +K+ E YM+ + DG K+KV
Sbjct: 355 QIKSLDKCDFSKIYDYWLAKTEANKTKNLSKEEKEAAKAKKDALEAPYMYCLWDGRKQKV 414
Query: 533 GNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNT 592
GNFRVEPP LFRGRGEHPK G++K R+ P ITINIGKD IPE P G WK V+HD
Sbjct: 415 GNFRVEPPSLFRGRGEHPKTGRVKTRVFPEQITINIGKDAKIPEPPA-GHKWKAVQHDQK 473
Query: 593 VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSR 652
TWLA W + IN +KYV L A+S +KGQSD +K+EKAR+LK YI IR YT++ S
Sbjct: 474 ATWLAMWQENING-AYKYVMLGAASDVKGQSDYKKFEKARELKKYIDKIRKDYTRELKSE 532
Query: 653 DGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKD 711
RQ A A YLID+LALRAGNEKD ++EADTVGCC+LK ++ PPNK+ FDFLGKD
Sbjct: 533 IMADRQRATAMYLIDQLALRAGNEKDTENEADTVGCCSLKYEHITLEPPNKVTFDFLGKD 592
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTY 770
SI+Y T VE V+K + F+ K + DDLFD+L T++LN HL M GLTAKVFRTY
Sbjct: 593 SIRYNETAFVEPQVFKNLKLFKKAPKSDGDDLFDRLTTSQLNKHLNSYMTGLTAKVFRTY 652
Query: 771 NASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
NAS T+ +L + + D G +A K+ +Y N++VAI+CNH+RTV +H QM ++ +
Sbjct: 653 NASYTMSTLLKELSQDPRSKGTIAEKVKLYNDCNRKVAILCNHKRTVGASHEQQMQKMGD 712
Query: 827 KIEDLK 832
+I+ L+
Sbjct: 713 RIKGLR 718
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%)
Query: 873 MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 932
+ + + +++ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+L
Sbjct: 833 IEKLDERVKILETQAEDRDGNKEVALGTSKINYIDPRLTVVFAKKFDVPIEKFFSKTLRD 892
Query: 933 KFAWAM 938
KF WA+
Sbjct: 893 KFRWAI 898
>gi|367018778|ref|XP_003658674.1| hypothetical protein MYCTH_2294738 [Myceliophthora thermophila ATCC
42464]
gi|347005941|gb|AEO53429.1| hypothetical protein MYCTH_2294738 [Myceliophthora thermophila ATCC
42464]
Length = 882
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 284/667 (42%), Positives = 393/667 (58%), Gaps = 54/667 (8%)
Query: 193 DDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDP---------EDSDDEV 243
+++DS+D PL+ R K+ +Q D I++ N P E SDD+
Sbjct: 52 EESDSDDGAPLAKR----QKSQHQKAEPDSDDEPIAKKNGSKLPPSVKDTATLESSDDDQ 107
Query: 244 PLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRET-QQKSSSVPVKRPLQKASS 302
PL ++ + A A + E K + + + +T R++ +++S P+ +P +K S
Sbjct: 108 PLGTKIAQRRANIEKAA---AKEAKSIRADAKTKKATPRKSIKEESDDEPLAKP-RKRQS 163
Query: 303 SGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDD-DHIPISQRMKNSAPSVKKSVTNTAK 361
+G SS KK T V+K+ D D D + K + P K T AK
Sbjct: 164 NGVSSVKK---------------TNGVKKEPDSDSDAPIAKKAKKAAPPPKKGKDTAPAK 208
Query: 362 ATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LP 419
K V + +K+ + + +Y + P D KWTTL HNGV+FPPPY LP
Sbjct: 209 DAKPVKEEPKEESKENSEGEEEEEYRWWDE--PKKEDDTIKWTTLEHNGVLFPPPYEPLP 266
Query: 420 HGVKMLYKGKEVNLTPEQEEVATMFAVML-DTDYMQKPKFRENFWNDWRKLLGKNHVIQN 478
VK+ Y GK V+L + EEVAT F ML T ++ P F++NF+ND++ +L K ++
Sbjct: 267 KHVKLYYDGKPVDLHVDAEEVATFFGSMLHSTQNVENPVFQKNFFNDFKDILKKTGGAKD 326
Query: 479 LEG----------CDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGV 528
L+G DF IY+ ++ + KK + EKKA K EK K E YM+ DG
Sbjct: 327 LDGNPVDITEFKKLDFTKIYEHYKAISDAKKARPAAEKKAEKAEKEKLEAPYMYCKWDGR 386
Query: 529 KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK 588
KE+VGNFRVEPPGLFRGRGEHPK G +KKR+ P +TINIGK+ +P P PG WK V+
Sbjct: 387 KERVGNFRVEPPGLFRGRGEHPKTGTVKKRVMPEQVTINIGKEAKVP-SPPPGHKWKAVQ 445
Query: 589 HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKD 648
HDN TWLA W + +N +KYV LAA+S++KGQ+D +K+EKAR+LK +I IRA YT++
Sbjct: 446 HDNKATWLAMWQENVN-GNYKYVMLAANSAIKGQADYKKFEKARELKKHIDRIRADYTRE 504
Query: 649 FVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDF 707
S RQ A A YLIDK ALRAGNEKD ++EA+TVGCC+LK +V PN + FDF
Sbjct: 505 LKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLKEPNTVIFDF 564
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
LGKDSI++ N V+ V+K + F+ K++ DD+FD+L T++LN HL MPGLTAKV
Sbjct: 565 LGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEEGDDIFDRLTTSQLNKHLSSYMPGLTAKV 624
Query: 767 FRTYNASITLDGML-NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
FRTYNAS T+ +L N D +A KI +Y N+EVAI+CNH+RTV +H AQM +L
Sbjct: 625 FRTYNASWTMSQLLKNLKVEDRTMAEKIKLYNDCNREVAILCNHKRTVGASHEAQMEKLG 684
Query: 826 EKIEDLK 832
++I+ LK
Sbjct: 685 DRIKGLK 691
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E L + + N +I +E +E K VALGTSKINY+DPR+TVA+ R VPIEK F
Sbjct: 800 EKLTAAVEKLNERIRTLELQSADREGNKEVALGTSKINYIDPRLTVAFSNRFNVPIEKFF 859
Query: 927 NKSLLAKFAWAM 938
+K+L KF WA+
Sbjct: 860 SKTLRDKFNWAI 871
>gi|345566634|gb|EGX49576.1| hypothetical protein AOL_s00078g65 [Arthrobotrys oligospora ATCC
24927]
Length = 915
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/452 (50%), Positives = 284/452 (62%), Gaps = 15/452 (3%)
Query: 393 LPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDT 450
L DG +KW TL H+GV+FPPPY LP VKM Y G + L PE EEVA A +L+
Sbjct: 276 LAEQNDGNQKWETLQHSGVMFPPPYELLPKNVKMKYDGVPITLGPEAEEVAGFMAALLEA 335
Query: 451 DYMQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
KF +NF+ DW+ +L G IQ+ + CDF+P+++ KE KK
Sbjct: 336 PQASDKKFLDNFFADWKTVLKETGGAKDKNGNTVKIQSYDKCDFRPMFEHFTALKEAKKA 395
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
MS+ EKK K E+ K EE Y + + DG KEKVGNFRVEPPGLFRGRGEHPK G KKR+
Sbjct: 396 MSATEKKEAKAEREKIEEPYQYCLWDGRKEKVGNFRVEPPGLFRGRGEHPKRGMYKKRVA 455
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P IT+NIGK +P P G W + H+ T +WLA W + IN KYV LA +SSLK
Sbjct: 456 PEQITLNIGKGATVPPPP-KGHKWGNIVHNQTASWLAMWTENIN-GNVKYVMLAVTSSLK 513
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +KYEKAR+LK +I IR YT++ + RQ A A YLIDK ALRAGNEK DD
Sbjct: 514 GQSDFKKYEKARELKKHIEKIRREYTQELSDKQTMVRQRATAIYLIDKFALRAGNEKGDD 573
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EADTVGCC+L+ +V PN + F FLGKDSIQ+ V+ V+K + F+ K
Sbjct: 574 EADTVGCCSLRYEHVTLEEPNLVHFKFLGKDSIQFDQVYTVDKQVFKNLRIFKKAPKGPG 633
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
DDLFD++ T +N KE MPGL+AKVFRTYNAS T+ L+K G +A K Y A
Sbjct: 634 DDLFDRIQTKHINEWFKEHMPGLSAKVFRTYNASWTMQQELSKMKNIGTIAEKHAAYNEA 693
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL 831
NK+VAI+CNHQRT SK H +QM + +I+ L
Sbjct: 694 NKKVAILCNHQRTKSKMHDSQMEKKMYEIKAL 725
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E E ++ + + KI+ MK KE+ V+LGTSKINY+DPR++V +CK+ VP+E+IF
Sbjct: 835 EKFEEQITKLDDKIQVKTSMMKDKENTSEVSLGTSKINYIDPRLSVVFCKKFGVPLERIF 894
Query: 927 NKSLLAKFAWAMD-VDPEFRF 946
K+L KF WA++ VD + F
Sbjct: 895 PKTLRDKFKWAIESVDENWEF 915
>gi|346324469|gb|EGX94066.1| topoisomerase I [Cordyceps militaris CM01]
Length = 900
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 274/665 (41%), Positives = 390/665 (58%), Gaps = 63/665 (9%)
Query: 194 DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNV---KTDPEDSDDEVPLSSRFP 250
D+DS D +PL+ R + N Q + + D IS+ K + SDD++PL +
Sbjct: 82 DSDS-DGEPLAKRQRSN-----QALESDSDDEPISKSKSTPRKAVDDSSDDDIPLGNLAK 135
Query: 251 KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKK 310
K A + + + E + + +K + +T R++ + S PL K+SS+
Sbjct: 136 KKAA----IEKVAAKEAQAIRAKEAKKKATPRKSIKNESDDDA--PLAKSSSN------- 182
Query: 311 PKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSS 370
S V K+ + V+K+ D D +PIS++ K + S KK + AK TK
Sbjct: 183 ---KRQSNGVAAKRKSNGVKKEESDSD-VPISKKSK-ATTSAKKGKSAPAKQTK------ 231
Query: 371 NKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKG 428
K K+ ++ + ++ +T+ D KW TL HNGV+F P Y LP +K+ Y G
Sbjct: 232 -KAGKEEEEEEEEYEWWNATR----PEDDSIKWQTLEHNGVLFAPAYEPLPKHIKLKYDG 286
Query: 429 KEVNLTPEQEEVATMFAVML---DTDYMQKPKFRENFWNDWRKLL-----GKNHV----- 475
++V L E EE A+ + M+ + +++ P FR+NF+ D+ +++ KN
Sbjct: 287 QDVTLPLEAEEAASFWVAMMTPASSHHLENPTFRQNFFEDFAEIVKKAGGAKNSAGDKVP 346
Query: 476 IQNLEGCDFKPIYD-WHQEQKEKK-KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVG 533
I++LE CDF +YD W + + KK K +S EK A K EK+K E Y+ + DG K+KVG
Sbjct: 347 IKSLEKCDFGNMYDHWLAKTEAKKNKNLSKAEKDAAKAEKDKLEAPYITCLWDGRKQKVG 406
Query: 534 NFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTV 593
NFRVEPP LFRGRGEHPK G++K R+ P ITINIGK+ +PE P G WK V+HD
Sbjct: 407 NFRVEPPSLFRGRGEHPKTGRVKSRVWPEQITINIGKEAKVPEPP-KGHKWKAVQHDQKA 465
Query: 594 TWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRD 653
TWLA W + IN +KYV L A+S +KGQSD +K+EKAR+LK +I IR Y K+ S
Sbjct: 466 TWLAMWQENING-AYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYNKELKSEI 524
Query: 654 GTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDS 712
RQ A A YLIDKLALRAGNEKD ++EADTVGCC+LK ++ PPN + FDFLGKDS
Sbjct: 525 MADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKFEHISLEPPNNVTFDFLGKDS 584
Query: 713 IQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
I+Y T +V+ V+K + F+ K DDLFD+L T++LN HL M GLTAKVFRTYN
Sbjct: 585 IRYNETAKVDAQVFKNLKLFKKAPKSDGDDLFDRLTTSQLNKHLNSYMQGLTAKVFRTYN 644
Query: 772 ASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 827
AS T+ +L + D G VA K+ +Y N++VAI+CNH+R+V +H QM ++ ++
Sbjct: 645 ASFTMSRLLRELENDPRSKGSVAEKVKLYNDCNRQVAILCNHKRSVGASHEQQMQKMGDR 704
Query: 828 IEDLK 832
I+ L+
Sbjct: 705 IKGLR 709
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 879 KIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
+++ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIE+ F+KSL KF WA+
Sbjct: 830 RVKVLELQAEDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVPIERFFSKSLRDKFRWAI 889
>gi|389624723|ref|XP_003710015.1| DNA topoisomerase 1 [Magnaporthe oryzae 70-15]
gi|351649544|gb|EHA57403.1| DNA topoisomerase 1 [Magnaporthe oryzae 70-15]
gi|440474837|gb|ELQ43557.1| DNA topoisomerase 1 [Magnaporthe oryzae Y34]
gi|440480416|gb|ELQ61078.1| DNA topoisomerase 1 [Magnaporthe oryzae P131]
Length = 906
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/470 (51%), Positives = 306/470 (65%), Gaps = 22/470 (4%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML-DT 450
P D KW TL HNGV+FPP Y LP VK+ Y G + L PE EEVAT F ML T
Sbjct: 262 PKKEDDSIKWNTLEHNGVLFPPDYEPLPKNVKLYYNGIPLQLHPEAEEVATFFGSMLHST 321
Query: 451 DYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHQEQKEKKKQ 500
++ P F +NF+ ++ L K N V I+ E DFKPI+ Q Q E KK
Sbjct: 322 QNVENPTFIKNFFTGFKDKLKKTGGAKDKNGNKVDIKEFEKLDFKPIFQHFQAQSEAKKA 381
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
S EEKKA KE ++K EE Y + DG KEKVGNFRVEPP LFRGRGEHPK G +K+R+
Sbjct: 382 RSKEEKKAEKEARDKMEEPYKYCKWDGRKEKVGNFRVEPPALFRGRGEHPKTGTIKERVP 441
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P +TINIGK +PE P G WK V+HDN TWLA W + +N +KYV LAA+S++K
Sbjct: 442 PEAVTINIGKGAKVPEPPA-GHKWKAVQHDNKATWLAMWQENVN-GNYKYVMLAANSAVK 499
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-D 679
GQ+D +K+EKAR+LK +I IRA YT++ S RQ A A Y IDKLALRAGNEKD +
Sbjct: 500 GQADFKKFEKARELKKHIDRIRADYTRELRSEIMADRQRATAMYFIDKLALRAGNEKDTE 559
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKK-Q 738
+EA+TVGCC+LKV NV PPNK+ DFLGKDSI++ VEV+ V+K + F+ K +
Sbjct: 560 NEAETVGCCSLKVENVSLQPPNKVFLDFLGKDSIRFEQEVEVDAQVFKNLKMFKKAPKVE 619
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV--AVKIDVY 796
DD+FD+L T++LN HL MPGLTAKVFRTYNAS T+ +L K ++ A K+ +Y
Sbjct: 620 GDDIFDRLTTSQLNKHLSSYMPGLTAKVFRTYNASYTMSTLLQKLHSKKNISDAEKVKIY 679
Query: 797 QRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK---GVLKDLRVDLD 843
N++VAI+CNH+R+V +H AQM +L ++I LK K + +DLD
Sbjct: 680 NDCNRQVAILCNHKRSVGASHDAQMKKLGDRILGLKYQQWRTKMMMIDLD 729
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R + E LE+++ + + +I ME ++ K VALGTSKINY+DPR+TV +C + VP
Sbjct: 819 RGVTVEKLEQQVKKLDERIRTMELQAADRDGNKEVALGTSKINYIDPRLTVVFCNKMNVP 878
Query: 922 IEKIFNKSLLAKFAWAMDV---DPEFRF 946
IEK F+K+L KF WA+ D E+ F
Sbjct: 879 IEKFFSKTLREKFNWAIQSVGEDDEWEF 906
>gi|46124993|ref|XP_387050.1| hypothetical protein FG06874.1 [Gibberella zeae PH-1]
Length = 910
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/461 (51%), Positives = 303/461 (65%), Gaps = 24/461 (5%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML--- 448
P D KWTTL HNGV+FPP Y LP VKMLY G+ V L PE EEVAT + M+
Sbjct: 261 PKKEDDSIKWTTLEHNGVLFPPDYEPLPKNVKMLYDGQPVTLAPEVEEVATFWVAMMTAA 320
Query: 449 DTDYMQKPKFRENFWNDWR---------KLLGKNHVIQNLEGCDFKPIYDWHQEQKE--K 497
+++ P FR+NF++D++ + GK I++L+ C+F I D+ ++ E K
Sbjct: 321 SIHHLENPVFRKNFFDDFKVYCDKYGVTDVQGKKVAIKSLDKCNFDKINDYWTKRVEQNK 380
Query: 498 KKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 557
K M+ EEK+A K +K+ E + DG KEKVGNFRVEPP LFRGRGEHPK GK+K+
Sbjct: 381 TKNMTKEEKEAAKAKKDALEAPFTHCTWDGRKEKVGNFRVEPPSLFRGRGEHPKTGKVKQ 440
Query: 558 RIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS 617
R+QP ITINIGK IPE P G WK V+HD TWLA W + IN + +KYV L A S
Sbjct: 441 RVQPEQITINIGKGAKIPEPP-KGHQWKAVQHDQKATWLAMWQENIN-QNYKYVMLGADS 498
Query: 618 SLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK 677
++KGQSD +K+EKAR+LK +I IR YTK+ S RQ A A Y IDKLALRAGNEK
Sbjct: 499 AIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEIMADRQRATAMYFIDKLALRAGNEK 558
Query: 678 D-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG- 735
D ++EADTVGCC+LK +V PPNK+ FDFLGKDSI Y T V+ V+K + F+
Sbjct: 559 DTENEADTVGCCSLKYEHVTLEPPNKVTFDFLGKDSIPYRETAVVDAQVFKNLKLFKKAP 618
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAV 791
K DDLFD+L T++LN HL M GLTAKVFRTYNAS T+ +LNK D G VA
Sbjct: 619 KTTGDDLFDRLTTSQLNKHLTSYMKGLTAKVFRTYNASFTMSTLLNKLGSDPRSRGTVAE 678
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
K+ +Y N+EVAI+CNH+RTV +H QM++L ++I+ L+
Sbjct: 679 KVKLYNDCNREVAILCNHKRTVGASHEQQMAKLGDRIKGLR 719
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
+ +I+ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+L KF W
Sbjct: 838 DERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRDKFRW 897
Query: 937 AM 938
A+
Sbjct: 898 AI 899
>gi|237638746|gb|ACR07927.1| topoisomerase I [Fusarium culmorum]
Length = 909
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/461 (51%), Positives = 302/461 (65%), Gaps = 24/461 (5%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML--- 448
P D KWTTL HNGV+FPP Y LP VKMLY G+ V L PE EEVAT + M+
Sbjct: 260 PKKEDDSIKWTTLEHNGVLFPPDYEPLPKNVKMLYDGQPVTLAPEVEEVATFWVAMMTAA 319
Query: 449 DTDYMQKPKFRENFWNDWRKLL---------GKNHVIQNLEGCDFKPIYDWHQEQKE--K 497
+++ P FR+NF++D++ GK I++L+ C+F I D+ ++ E K
Sbjct: 320 SIHHLENPVFRKNFFDDFKVYCDKYGVTDAQGKKVAIKSLDKCNFDKINDYWTKRVEQNK 379
Query: 498 KKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 557
K M+ EEK+A K +K+ E + DG KEKVGNFRVEPP LFRGRGEHPK GK+K+
Sbjct: 380 TKNMTKEEKEAAKAKKDALEAPFTHCTWDGRKEKVGNFRVEPPSLFRGRGEHPKTGKVKQ 439
Query: 558 RIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS 617
R+QP ITINIGK IPE P G WK V+HD TWLA W + IN + +KYV L A S
Sbjct: 440 RVQPEQITINIGKGAKIPEPP-KGHQWKAVQHDQKATWLAMWQENIN-QNYKYVMLGADS 497
Query: 618 SLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK 677
++KGQSD +K+EKAR+LK +I IR YTK+ S RQ A A Y IDKLALRAGNEK
Sbjct: 498 AIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEIMADRQRATAMYFIDKLALRAGNEK 557
Query: 678 D-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG- 735
D ++EADTVGCC+LK +V PPNK+ FDFLGKDSI Y T V+ V+K + F+
Sbjct: 558 DTENEADTVGCCSLKYEHVTLEPPNKVTFDFLGKDSIPYRETAVVDAQVFKNLKLFKKAP 617
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAV 791
K DDLFD+L T++LN HL M GLTAKVFRTYNAS T+ +LNK D G VA
Sbjct: 618 KTTGDDLFDRLTTSQLNKHLTSYMKGLTAKVFRTYNASFTMSTLLNKLGSDPRSRGTVAE 677
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
K+ +Y N+EVAI+CNH+RTV +H QM++L ++I+ L+
Sbjct: 678 KVKLYNDCNREVAILCNHKRTVGASHEQQMAKLGDRIKGLR 718
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
+ +I+ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+L KF W
Sbjct: 837 DERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRDKFRW 896
Query: 937 AM 938
A+
Sbjct: 897 AI 898
>gi|358391412|gb|EHK40816.1| hypothetical protein TRIATDRAFT_301595 [Trichoderma atroviride IMI
206040]
Length = 912
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/555 (45%), Positives = 336/555 (60%), Gaps = 31/555 (5%)
Query: 329 VEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSK 388
V KK + D PIS++ K ++ K ++AK TK V K + + + + +
Sbjct: 203 VVKKDESDSDAPISKKSKAASAPAKGKRASSAKDTKDVKKGKAKSKEPSDE---DEEEGF 259
Query: 389 STKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAV 446
P D KW TL HNGV+F P Y LP VKM Y GK V L+PE EEVAT +A
Sbjct: 260 EWWNAPKKEDDSIKWNTLEHNGVLFAPEYQPLPKNVKMYYDGKPVTLSPEAEEVATFWAS 319
Query: 447 ML---DTDYMQKPKFRENFWNDWRKLLGKNHV---------IQNLEGCDFKPIYDWHQEQ 494
M+ T ++ P FR+NF+ D+ + K+ I++ + CDF I ++ +
Sbjct: 320 MMTAASTHHLDNPVFRKNFFTDFSDFIKKHGAKDASGNKIDIKSFDLCDFSKIAEYWAAR 379
Query: 495 KEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 554
E KK M+ EEK A K EK+ E Y++ DG K+KVGNFRVEPP LFRGRGEHPK GK
Sbjct: 380 NEAKKAMTKEEKAAAKAEKDALEAPYLYCTWDGRKQKVGNFRVEPPSLFRGRGEHPKTGK 439
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
+K R+ P ITINIGK +P P G WK V+HD TWLA W + IN +KYV L
Sbjct: 440 VKTRVLPEQITINIGKGAKVP-TPPAGHKWKAVQHDQKATWLAMWQENING-AYKYVMLG 497
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
A+S +KGQSD +K+EKAR+LK +I IR YTKD S RQ A A YLIDKLALRAG
Sbjct: 498 AASDVKGQSDFKKFEKARELKKHIDKIRRDYTKDLKSEVMADRQRATAMYLIDKLALRAG 557
Query: 675 NEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
NEKD ++EADTVGCC+LK ++ PP+++ FDFLGKDSI+Y T V+ V+K + F+
Sbjct: 558 NEKDTENEADTVGCCSLKYEHISLQPPDQVTFDFLGKDSIRYNETARVDPQVFKNLKLFK 617
Query: 734 TG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GD 788
K DDLFD+L+T++LN HL M GLTAKVFRTYNAS T+ +L + D G
Sbjct: 618 KAPKTDGDDLFDRLNTSQLNKHLNSYMTGLTAKVFRTYNASHTMSELLKELGKDPRSRGT 677
Query: 789 VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-- 843
+A K+ +Y N++VAI+CNH+RTV H QM +L ++I+ L K K + +DLD
Sbjct: 678 IADKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQKLGDRIKGLRYQKWRTKKMILDLDST 737
Query: 844 -RAKKGKPPLMKDSD 857
+ KKG ++D D
Sbjct: 738 QKKKKGAAYFVRDED 752
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 873 MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 932
+ + + +I +E + ++ K VAL TSKINY+DPR+TV + K+ +VPIEK F+K+L
Sbjct: 836 IEKIDERIRVLETQAEDRDGNKEVALSTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRD 895
Query: 933 KFAWAM 938
KF WA+
Sbjct: 896 KFRWAI 901
>gi|322707004|gb|EFY98583.1| topoisomerase I [Metarhizium anisopliae ARSEF 23]
Length = 907
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 285/665 (42%), Positives = 389/665 (58%), Gaps = 61/665 (9%)
Query: 217 GIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQ- 275
G+ K+ ++IS+V+ + D DSD E PL+ R P+ +A +P+DSD SKV+
Sbjct: 64 GVNKRKSRSSISKVSYR-DESDSDGE-PLAKR-PRPSA-----RPVDSDSDDEPISKVKA 115
Query: 276 QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADD 335
+ STS P+ L K ++ A + + SKE K K K+ D
Sbjct: 116 KKKSTSMLADSSDDEKPLGVQLAKKKAAIEKKAAREAQTIRSKET-AKSTPKKNIKEESD 174
Query: 336 DDHIPIS---QRMKNSAPSVKKS--------------------VTNTAKATKSVSSSSNK 372
D+ + S +R N A + +KS T ++K S++S K
Sbjct: 175 DEPLAKSSANKRQSNGASAKRKSNGVKKEESDSDAPISKKTKAKGKTTASSKGKSTASTK 234
Query: 373 INKKTKKVIKNSQYSKSTKML--PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKG 428
+KK K V + S+ + + P D KW TL HNGV+F P Y LP VK+LY G
Sbjct: 235 DSKKAK-VKETSEDEEGYEWWNAPKPEDDSIKWQTLEHNGVLFAPEYEPLPKNVKLLYDG 293
Query: 429 KEVNLTPEQEEVATMFAVML---DTDYMQKPKFRENFWNDWRKLLGKNH----------V 475
K V L+ E EEVAT + M+ + ++ P FR NF+ D+ +++ KN
Sbjct: 294 KPVTLSKEAEEVATFWVAMMTPASSHHLDNPVFRNNFFTDFSEIVKKNGGATDREGNKVQ 353
Query: 476 IQNLEGCDFKPIYD-W-HQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVG 533
I++L+ CDF IYD W + + K K +S EEK+A K +K+ E Y++ I DG K+KVG
Sbjct: 354 IKSLDKCDFSKIYDHWLAKTEANKTKNLSKEEKEAAKAKKDALEAPYLYCIWDGRKQKVG 413
Query: 534 NFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTV 593
NFRVEPP LFRGRGEHPK G++K R+ P ITINIGKD IPE P G WK V+HD
Sbjct: 414 NFRVEPPSLFRGRGEHPKTGRVKTRVFPEQITINIGKDAKIPEPPA-GHKWKAVQHDQKA 472
Query: 594 TWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRD 653
TWLA W + IN +KYV L A+S +KGQSD +K+EKAR+LK YI IR YT++ S
Sbjct: 473 TWLAMWQENING-AYKYVMLGAASDVKGQSDYKKFEKARELKKYIDKIRKDYTRELKSEV 531
Query: 654 GTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDS 712
RQ A A YLID+LALRAGNEKD ++EADTVGCC+LK ++ PPNK+ FDFLGKDS
Sbjct: 532 MADRQRATAMYLIDQLALRAGNEKDTENEADTVGCCSLKYEHITLEPPNKVTFDFLGKDS 591
Query: 713 IQYVNTVEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
I+Y T VE V+K + F+ K + DDLFD+L T++LN HL M GLTAKVFRTYN
Sbjct: 592 IRYNETALVEPQVFKNLKLFKKAPKSDGDDLFDRLTTSQLNKHLNSYMTGLTAKVFRTYN 651
Query: 772 ASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 827
AS T+ +L + + D G +A K+ +Y N++VAI+CNH+RTV H QM ++ ++
Sbjct: 652 ASYTMSTLLKELSQDPRSKGSIAEKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQKMGDR 711
Query: 828 IEDLK 832
I+ L+
Sbjct: 712 IKGLR 716
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%)
Query: 873 MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 932
+ + + +++ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+L
Sbjct: 831 IEKLDERVKVLETQAEDRDGNKEVALGTSKINYIDPRLTVVFAKKFDVPIEKFFSKTLRD 890
Query: 933 KFAWAM 938
KF WA+
Sbjct: 891 KFRWAI 896
>gi|408388293|gb|EKJ67979.1| hypothetical protein FPSE_11790 [Fusarium pseudograminearum CS3096]
Length = 906
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/461 (51%), Positives = 301/461 (65%), Gaps = 24/461 (5%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML--- 448
P D KWTTL HNGV+FPP Y LP VKMLY G+ V L PE EEVAT + M+
Sbjct: 257 PKKEDDSIKWTTLEHNGVLFPPDYEPLPKNVKMLYDGQPVTLAPEVEEVATFWVAMMTAA 316
Query: 449 DTDYMQKPKFRENFWNDWRKLL---------GKNHVIQNLEGCDFKPIYDWHQEQKE--K 497
+++ P FR+NF+ D++ GK I++L+ C+F I D+ ++ E K
Sbjct: 317 SIHHLENPVFRKNFFEDFKVYCDKYGVTDAQGKKVAIKSLDKCNFDKINDYWTKRVEQNK 376
Query: 498 KKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 557
K M+ EEK+A K +K+ E + DG KEKVGNFRVEPP LFRGRGEHPK GK+K+
Sbjct: 377 TKNMTKEEKEAAKAKKDALEAPFTHCTWDGRKEKVGNFRVEPPSLFRGRGEHPKTGKVKQ 436
Query: 558 RIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS 617
R+QP ITINIGK IPE P G WK V+HD TWLA W + IN + +KYV L A S
Sbjct: 437 RVQPEQITINIGKGAKIPEPP-KGHQWKAVQHDQKATWLAMWQENIN-QNYKYVMLGADS 494
Query: 618 SLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK 677
++KGQSD +K+EKAR+LK +I IR YTK+ S RQ A A Y IDKLALRAGNEK
Sbjct: 495 AIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEIMADRQRATAMYFIDKLALRAGNEK 554
Query: 678 D-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG- 735
D ++EADTVGCC+LK +V PPNK+ FDFLGKDSI Y T V+ V+K + F+
Sbjct: 555 DTENEADTVGCCSLKYEHVTLEPPNKVTFDFLGKDSIPYRETAVVDAQVFKNLKLFKKAP 614
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAV 791
K DDLFD+L T++LN HL M GLTAKVFRTYNAS T+ +LNK D G VA
Sbjct: 615 KTTGDDLFDRLTTSQLNKHLTSYMKGLTAKVFRTYNASFTMSTLLNKLGSDPRSRGTVAE 674
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
K+ +Y N+EVAI+CNH+RTV +H QM++L ++I+ L+
Sbjct: 675 KVKLYNDCNREVAILCNHKRTVGASHEQQMAKLGDRIKGLR 715
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
+ +I+ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+L KF W
Sbjct: 834 DERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRDKFRW 893
Query: 937 AM 938
A+
Sbjct: 894 AI 895
>gi|298711983|emb|CBJ32924.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1123
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/611 (41%), Positives = 350/611 (57%), Gaps = 82/611 (13%)
Query: 401 KKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM-LDTDYM--QKPK 457
K+W +L HNG F P Y PHGVK+ Y GKEV+LT +QEEVAT +A M LD + Q
Sbjct: 366 KQWDSLEHNGAHFAPEYKPHGVKLKYDGKEVHLTTQQEEVATFYASMPLDGPQLAEQGKV 425
Query: 458 FRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
F +NF+ D++ +LGK HVI++ + DF I K+ K + EK A K K +
Sbjct: 426 FNKNFFTDFKAVLGKGHVIKDFKLLDFSAIRAHLDITKQIKLAATDGEKAAAKTVKEELV 485
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
KY +AIVDG EKVGN+ VEPPGLFRGRGEHPK GKLK R+ SDI IN + V +P C
Sbjct: 486 HKYSYAIVDGHLEKVGNYNVEPPGLFRGRGEHPKTGKLKARVTASDIAINCAEGVCVPRC 545
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
+PG +W+ V+H+ + TWL+ W+ + KY+ LAASSS KG+SD KY+KA KLK +
Sbjct: 546 NMPGYAWQSVQHNPSATWLSKWDGLL--AGTKYMMLAASSSFKGKSDMAKYDKAMKLKGF 603
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IR Y K S D +QIA A ++IDKLALR G EK DEADTVGCC+L+ ++
Sbjct: 604 IERIRTDYVKKLSSSDRRTKQIATAVWIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTF 663
Query: 698 IPP-NKLKFDFLGKDSIQYVNTV------EVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
N++ +FLGKDS+ + T+ +V V+K + F GK+Q++++FD LD +
Sbjct: 664 HATNNEIDLEFLGKDSMLFKETIDFDRYGDVGRRVFKNLQAFCKGKRQSEEVFDYLDPSI 723
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGML--NKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL+ LMPGLTAKVFRTYNAS TL L VA K+ +Y AN+EVAI+CN
Sbjct: 724 LNLHLQSLMPGLTAKVFRTYNASDTLQQKLPGEAALAGLSVAEKVALYNLANREVAILCN 783
Query: 809 HQRTVSKTHSA-------QMSRLTEKIEDLKGVLKDL----------------------- 838
HQRTVS +++ LT++ ++LK +L+ +
Sbjct: 784 HQRTVSSAQKEGLEKQRDRLAMLTKQKQELKQMLRTIKSGKGSVPLKSNDKSQEESAVRA 843
Query: 839 ----------------RVDLDRAKKGKPPLMKDSDGKRK-------RNLAPEALERKMAQ 875
+V +A + L K + R+ +N + E++E ++ +
Sbjct: 844 LEKAKKAKANAKTNAEKVAATKAGETAKALRKAAQQARQEAMHLFAKNPSAESVEERIKR 903
Query: 876 TNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFA 935
KI+K++ ++ ++D K V+L TSKINY+DPR +F K+L KF
Sbjct: 904 WGDKIKKLQIVIRDRDDNKEVSLSTSKINYMDPR---------------VFAKTLQNKFV 948
Query: 936 WAMDVDPEFRF 946
WAM+V P++ F
Sbjct: 949 WAMNVPPDWNF 959
>gi|294885337|ref|XP_002771280.1| DNA topoisomerase, putative [Perkinsus marinus ATCC 50983]
gi|239874776|gb|EER03096.1| DNA topoisomerase, putative [Perkinsus marinus ATCC 50983]
Length = 551
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/448 (51%), Positives = 299/448 (66%), Gaps = 9/448 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
D KW+ L H+G+IF PPY PHGVKMLYKG+ ++L PE EEVAT FA L TD+ QK K
Sbjct: 91 DNAAKWSYLEHHGMIFTPPYEPHGVKMLYKGEPIDLPPEAEEVATFFAQTLGTDWCQKEK 150
Query: 458 FRENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK 515
F+ NFW D++ L K I L+ CDF+PI ++ ++ E KK + EEK+A KE K
Sbjct: 151 FQNNFWADFQAKLPKELKSKITKLKDCDFEPIKNYLDKRSEAKKARTKEEKEAEKEAKRL 210
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+ Y IVD ++E+VGNFRVEPP LFRGRG+HPKMGKLK+ I P D+T+N D P P
Sbjct: 211 NDHPYTHVIVDELRERVGNFRVEPPNLFRGRGDHPKMGKLKQYILPEDVTVNCAADAPAP 270
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
CP+PG ++K+V HD VTWLA++ D IN + KYVFL A+S KGQSD KYEKARKLK
Sbjct: 271 RCPVPGHAYKDVVHDPAVTWLAWFTDTIN-NQVKYVFLNAASGFKGQSDWLKYEKARKLK 329
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGN 694
YI IR YTK S D +++ A YLID+LALR GNEK+ ++EADTVGCC+L+V +
Sbjct: 330 KYIRGIRDDYTKKMKSSDDDEKELGTAVYLIDRLALRVGNEKNTEEEADTVGCCSLRVEH 389
Query: 695 VECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
+ NK+ DFLGKDSI+Y+NTV+V+ VYK + +K D +F +D +K+N +
Sbjct: 390 MTFEADNKITLDFLGKDSIRYLNTVQVDPLVYKNLKTLCKARKPEDMIF-SIDPSKVNDY 448
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQ 810
K+ M L+AKVFRTYNASITL+ L K + D + + Y AN+ VAI+CNHQ
Sbjct: 449 FKQFMQELSAKVFRTYNASITLEQELCKFDPEEHDISDPSEMVKFYNDANRRVAILCNHQ 508
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
R K H A M RL +K+ D + L+ L
Sbjct: 509 RAPPKQHEAGMERLKKKLADQEATLRGL 536
>gi|50286731|ref|XP_445795.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525101|emb|CAG58714.1| unnamed protein product [Candida glabrata]
Length = 717
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/444 (50%), Positives = 303/444 (68%), Gaps = 11/444 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGV+FPPPY LP VK+ Y+G V+L E EEVA FA +L+T + Q
Sbjct: 88 DDTIKWTTLEHNGVLFPPPYEALPSHVKLYYEGNPVDLPLEAEEVAGFFAHLLETPHAQN 147
Query: 456 PKFRENFWNDWRKLLG-----KNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ D++ +L +N + I++ + DF ++D+ + KE+KK M++ +KK +
Sbjct: 148 PVFQKNFFEDFKHVLNDAGGTQNGIEIESFDRMDFSAMHDYFVQLKEEKKSMTAMQKKEI 207
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EEKY + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+RI+P DI +N+G
Sbjct: 208 RLEREKFEEKYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRIRPEDIVLNLG 267
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
+ PIP P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 268 EGAPIPPPP-SGHQWGEIRHDNTVQWLAMWRENIFGS-FKYVRLAANSSLKGQSDFKKFE 325
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK +I IR Y +F S+ RQ AVA YLID ALRAG EK ++EADTVGCC+
Sbjct: 326 KARELKKHIDRIRKEYRNNFKSKLMVERQKAVAVYLIDVFALRAGGEKSEEEADTVGCCS 385
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ ++ PPN + FDFLGKDSI++ V+V+ V+K + F+ KQ LFD+LD
Sbjct: 386 LRYEHITLKPPNTVIFDFLGKDSIRFYQEVQVDPKVFKNLALFKKPPKQPGHQLFDRLDP 445
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN L+ M GLTAKVFRTYNAS T+ L+ +G VA K+ Y AN+ VAI+CN
Sbjct: 446 SLLNKFLQNYMTGLTAKVFRTYNASKTMQEQLDLIPNEGSVAEKLLKYNAANRTVAILCN 505
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLK 832
HQRTV+ H+ +++ +++IE+ K
Sbjct: 506 HQRTVTAGHAKSVAKSSDRIEEFK 529
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE+ + + + +I + ++ +E V+LGTSKINY+DPR++V +CK++ VPIEKIF
Sbjct: 637 EKLEKAIERLDQRISTSQVQLQDREANSEVSLGTSKINYIDPRLSVVFCKKYGVPIEKIF 696
Query: 927 NKSLLAKFAWAMD-VDPEFRF 946
KSL KF WA++ VD +RF
Sbjct: 697 TKSLREKFKWAIESVDETWRF 717
>gi|47227318|emb|CAF96867.1| unnamed protein product [Tetraodon nigroviridis]
Length = 806
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 264/625 (42%), Positives = 352/625 (56%), Gaps = 84/625 (13%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP V+ Y GK + L+ + EEVAT FA MLD +Y K FR
Sbjct: 184 KWKFLEHKGPVFAPPYEPLPSNVRFYYDGKPMVLSADAEEVATFFAKMLDHEYTTKDVFR 243
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEK----------- 506
+NF+ DWRK + + I +L+ CDF ++ + + Q E +K M+ EEK
Sbjct: 244 KNFFKDWRKEMTPEEKAKITDLKKCDFSEMHQYFKAQTEARKAMTKEEKLVSPHPHSCRR 303
Query: 507 ------------KALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 554
+ +KEE + +++ + I+D KE++ NFR+EPPGLFRGRG+HPKMG
Sbjct: 304 RLRAAGFIPSAFQKIKEENERILQQFGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGM 363
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
LK+RI+P DI IN KD PE P PG WKEV+HDN VTWL W + I KY+ L
Sbjct: 364 LKRRIRPEDIIINCSKDSKYPE-PPPGTRWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLN 421
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
SS +KG+ D +KYE AR+LK + IR Y +D+ S++ RQ AVA Y IDKLALRAG
Sbjct: 422 PSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFIDKLALRAG 481
Query: 675 NEKDDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKA 728
NEK++ E ADTVGCC+L+V +++ P ++FDFLGKDSI+Y N V VE V+K
Sbjct: 482 NEKEEGETADTVGCCSLRVEHIKLYPEIDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKN 541
Query: 729 IGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDG 787
+ F K+ +DDLFD+L+T+ LN HL+ELM GLTAKVFRTYNASITL L + T G
Sbjct: 542 LQLFMENKEPDDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQAQLKELTSGAP 601
Query: 788 DVAVKIDVYQRANKEVAIICNHQR----------TVSKTHSAQMSRLTEKI--EDLKGVL 835
DVA V R + + QR T T T + L+
Sbjct: 602 DVARCWRVEGRPGVANRLRSSLQRRKTSPPRSCPTTGPTGPWPSCATTRGLRPRPLRSPC 661
Query: 836 KDLRVD-----LDRAKKGKP----PLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
+ R+ D ++ P PL +K L+ E K A+ +AK+ K E+
Sbjct: 662 RTCRLRSAPQASDSRRRSVPLILCPLHLLQIDAKKEQLSAAKRELKGAKADAKVRKDEKS 721
Query: 887 MKT------------------------KEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
K +E+ K +ALGTSK+NYLDPRI+VAWCK+ +PI
Sbjct: 722 KKAVESKKKAVQRIEDQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWGIPI 781
Query: 923 EKIFNKSLLAKFAWAMDV---DPEF 944
EKI+NK+ KFAWA+D+ D EF
Sbjct: 782 EKIYNKTQREKFAWAIDMAEKDYEF 806
>gi|149236013|ref|XP_001523884.1| DNA topoisomerase I [Lodderomyces elongisporus NRRL YB-4239]
gi|146452260|gb|EDK46516.1| DNA topoisomerase I [Lodderomyces elongisporus NRRL YB-4239]
Length = 849
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/441 (50%), Positives = 307/441 (69%), Gaps = 9/441 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG+ KWT+L HNGV+FPP Y LP VK+ Y GK VNL E EEVA F M++TD+ +
Sbjct: 223 DGEIKWTSLEHNGVMFPPEYEPLPSHVKLYYDGKPVNLPVEAEEVAGFFGAMVETDHAKN 282
Query: 456 PKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
P F++NF+ND++++L G N I+ E DF IY ++++++E+KK MS EEKK LKE
Sbjct: 283 PVFQKNFFNDFKEVLKESGGCNVDIKEFEKMDFSKIYAYYEKKREEKKAMSREEKKRLKE 342
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
EK++ EE + +++G KE VGNFR+EPPGLFRGRG HPK GKLK+R++P +T+N+ K
Sbjct: 343 EKDRIEEPFKTCLLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVRPEQVTLNLSKG 402
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
V IPE P G W EV+HDN VTWLA W + I+ FKYV AA+SS+KGQSD +K+EKA
Sbjct: 403 VKIPEPP-AGHHWAEVRHDNEVTWLAMWKENIS-DSFKYVRFAANSSVKGQSDFKKFEKA 460
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 691
R+L+ ++ +IR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L+
Sbjct: 461 RELRQHVDAIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLR 520
Query: 692 VGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAK 750
++ PPN++ FDFLGKDSI++ VEV+ V+K + F+ K+ DD+FD+++ +
Sbjct: 521 YEHLTLKPPNQVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKDPKRPGDDIFDRINPSM 580
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQ 810
+N L+ M GLTAKVFRTYNAS T+ L+ +G A K+ + AN+ VAI+CNHQ
Sbjct: 581 VNKQLQNYMKGLTAKVFRTYNASKTMQDQLDLIPNEGTAAEKVVKFNAANRTVAILCNHQ 640
Query: 811 RTVSKTHSAQMSRLTEKIEDL 831
RTVSK H + ++ +K+ +L
Sbjct: 641 RTVSKNHGNSVQKINDKLREL 661
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 12/124 (9%)
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
+ EK++ + + K+ + +L K GKP + K + ++ + E +E ++ T +
Sbjct: 737 IKEKLDKITELEKEYKKEL---KTGKPEIPKGATVEKLKTQV-ENMENRIVSTTLQ---- 788
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDP 942
+K KED V+LGTSK+NY+DPR+TV + K+ +VPIEK+F K+L KF WA++ D
Sbjct: 789 ---LKDKEDNSEVSLGTSKMNYIDPRLTVMFSKKFDVPIEKLFTKTLREKFKWAIESTDK 845
Query: 943 EFRF 946
++RF
Sbjct: 846 DWRF 849
>gi|226287479|gb|EEH42992.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 825
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/575 (43%), Positives = 342/575 (59%), Gaps = 37/575 (6%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGVIFPPPY LP VKM Y G + L PE EEVA F ML++
Sbjct: 266 PTKGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGVPITLAPEAEEVAGFFGSMLNST 325
Query: 452 Y-MQKPKFRENFWNDWRKLLGKNH----------VIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ND+ + K+ I + + CDFKPI+++++ + +KK
Sbjct: 326 HNVENPTFQKNFFNDFTAYVKKSGGAKDPNGNPVAINSFDKCDFKPIFEFYEAARLEKKA 385
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ + EKK LK EK++ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+
Sbjct: 386 LPATEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGKVKTRVM 445
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 446 PEQITINIGKEAKVP-IPPAGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDIK 503
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR+ Y K RQ A A YLID+ ALRAGNEK +D
Sbjct: 504 GQSDYKKFEKARELKKHIDRIRSDYKKGLKQELMAERQKATAVYLIDQFALRAGNEKGED 563
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI+Y + VEV+ V+K + F+ KK+
Sbjct: 564 EADTVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRYYDEVEVDPQVFKNLKIFKKPPKKEG 623
Query: 740 DDLFDKLDTAKLNAH---LKELMPGLTAKVFRTYNAS-ITLDGMLNKGTGDGDVAVKIDV 795
D++FD+L L LK++M L K+ + A+ LD L++ A ++
Sbjct: 624 DEIFDRLTIKGLKYQQWRLKQMMLDLDPKLKKKKGAAYFELDESLDQEWIKEHQAFLVEE 683
Query: 796 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE---DLKGVLKDLRVDLDRAKKGKPPL 852
++ K+ N +R + L E++E +L+ K +GK
Sbjct: 684 QRQKIKKKFEKDNEKRVAEGEKEMKAKELEERLEAANELEAKFKKENKSKKVVPEGK--- 740
Query: 853 MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
+ E LE ++ + +IE M + KE+ K VALGTSKINY+DPR+TV
Sbjct: 741 ----------GVTVEKLENQLLKLGQRIENMSLQAEDKENNKEVALGTSKINYIDPRLTV 790
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAM-DVDPEFRF 946
+ ++ VP+EK F+K+L KF WA+ VD + F
Sbjct: 791 VFSRKFNVPMEKFFSKTLREKFDWAIKSVDENWEF 825
>gi|323449565|gb|EGB05452.1| hypothetical protein AURANDRAFT_70313 [Aureococcus anophagefferens]
Length = 658
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/552 (43%), Positives = 331/552 (59%), Gaps = 30/552 (5%)
Query: 401 KKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVM------LDTDYMQ 454
K W TL H G+ F P Y PHGV +LY G ++LTP QEE+AT +A M L+ Q
Sbjct: 112 KAWQTLEHCGMTFEPQYKPHGVAVLYDGVPISLTPYQEELATFYAAMPEDGPQLNVSGGQ 171
Query: 455 KPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKN 514
+ F+ NFW+DW K+LGK+H I++ + CDF I K K+ S EK +E ++
Sbjct: 172 REIFQRNFWDDWHKVLGKSHAIKSFDKCDFSDISKHLDRLKFVKRAASDAEKVVARELRD 231
Query: 515 KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPI 574
+ + +AI+D EKVGNFR+EPP LFRGRG+HPK G +K R++P ++IN G P
Sbjct: 232 DCQLRSGYAILDDHLEKVGNFRMEPPSLFRGRGKHPKTGVVKLRVEPDQVSINCGASRPP 291
Query: 575 PECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKL 634
P C G SW E+KHD+TVTWL+ W++ + KYV LAA+SSLKG+SD +K++KA +L
Sbjct: 292 PICLELGRSWGEIKHDDTVTWLSTWHENVMQSN-KYVMLAANSSLKGKSDFKKFQKAMQL 350
Query: 635 KDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN 694
K I +R Y K+ S+D +Q A +LID LALR G EK ++EADTVGCC+L+V +
Sbjct: 351 KGCIERVRHDYHKNLKSKDRHLKQQATTMWLIDTLALRVGGEKSEEEADTVGCCSLRVEH 410
Query: 695 VECIPPNK-LKFDFLGKDSIQYVNTV------EVELPVYKAIGQFQTGKKQNDDLFDKLD 747
K + +FLGKDSI + ++ E Y I + KK+N+ +F+ ++
Sbjct: 411 FTFHKTGKDVDLEFLGKDSILFKQSIDFAGFDEHGQQAYDNIREMCRSKKKNEQVFELIE 470
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGML--------NKGTGDGDVAVKIDVYQRA 799
LNAHL +MPGLTAKVFRTYNAS TL L + GD K+ Y A
Sbjct: 471 PTSLNAHLSSIMPGLTAKVFRTYNASETLQNQLPDAEHVIEMRSIGD-----KLIAYNEA 525
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL--KGVLKDLRVDLDRAKKGKPPLMKDSD 857
N+ VAI+CNHQRTVS + + EK+E + + + KK + K ++
Sbjct: 526 NRIVAILCNHQRTVSAAAATGLEAQAEKLEQTQEQKIAATAAYEAATIKKREANKSKQAE 585
Query: 858 GKRKRNLAPEA-LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
R L E + R++ KI+K+E D++ KE+ K V+LGTSK NYLDPRI+VAWCK
Sbjct: 586 AHRFSKLPDEKDVSRRIDIWTEKIKKLEIDLRNKEENKEVSLGTSKANYLDPRISVAWCK 645
Query: 917 RHEVPIEKIFNK 928
R +VPIEK+F++
Sbjct: 646 RCDVPIEKLFSR 657
>gi|353239886|emb|CCA71779.1| probable TOP1-DNA topoisomerase I [Piriformospora indica DSM 11827]
Length = 905
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/457 (50%), Positives = 317/457 (69%), Gaps = 17/457 (3%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KKW +L H GV+FPP Y LP VKMLY GK V+L PE EEVA FA MLDT++ Q
Sbjct: 263 GDGTKKWDSLSHAGVLFPPAYTPLPSTVKMLYDGKPVDLPPESEEVAGFFAAMLDTEHAQ 322
Query: 455 KPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
FR+NF++DW+++L + VI++++ CDF+P+ ++ + +K + K++S EK+ +
Sbjct: 323 NDVFRKNFFDDWKEVLKEFPPRNGIVIKSMDKCDFRPMAEYIEAEKARIKRLSKAEKQEI 382
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
KE+K K+E Y + +G EKVGNFRVEPPGLFRGRGEHPK G +KKR++P DI INIG
Sbjct: 383 KEKKQKEEAPYATCMFNGRPEKVGNFRVEPPGLFRGRGEHPKKGCVKKRVRPEDIVINIG 442
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
+ +P +PG+ WK V+HDNTVTWLA W + IN KYVFLAA+SS+KG+SDR+K+E
Sbjct: 443 EGEKVPVPGVPGK-WKAVQHDNTVTWLAHWKENIN-GNCKYVFLAATSSIKGKSDRDKFE 500
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
+AR+LK++I IR+ Y D S+ RQ A A YLIDK ALRAGNEK +DEADTVGCC+
Sbjct: 501 RARELKNHIDRIRSDYQNDLKSKVTADRQRATAMYLIDKYALRAGNEKGEDEADTVGCCS 560
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTV-EVELPVYKAIGQFQ-TGKKQNDDLFDKLD 747
L++ +V + DFLGKDSI+Y + +++ V+K + F+ +GKK +D LFD++
Sbjct: 561 LRLEHVTLDKSGVVILDFLGKDSIRYYKEIDDIDPQVFKNLRIFKGSGKKDSDLLFDRVT 620
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDG-MLNKGTGDGDVAV-KIDVYQRANKEVAI 805
TA LN HL+ M GLTAKVFRTYNAS T + +L+ G + K++ Y ANK A
Sbjct: 621 TAGLNNHLRSYMKGLTAKVFRTYNASTTFEKELLSFEFGPNTLQQEKVNAYNAANKTAAE 680
Query: 806 ICNHQRTVSKTHSAQMSRLTEKIEDLK----GVLKDL 838
+CNHQR SK H+A M++++ +I LK G+ ++L
Sbjct: 681 LCNHQRAASKNHAAGMAKMSLQISYLKHQRMGMCREL 717
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 55/94 (58%)
Query: 853 MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
+ D + PE L + + + + I K + KE LKT++L TSKINYLDPRIT
Sbjct: 812 FRGKDADETKEYTPEQLVKMIEKQSDIISKNKLKQSDKESLKTISLTTSKINYLDPRITA 871
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
A+C RH +PI F K+L KF WAMD ++RF
Sbjct: 872 AYCDRHGLPISLFFTKTLRNKFPWAMDTKEDWRF 905
>gi|258565969|ref|XP_002583729.1| DNA topoisomerase I [Uncinocarpus reesii 1704]
gi|237907430|gb|EEP81831.1| DNA topoisomerase I [Uncinocarpus reesii 1704]
Length = 889
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 293/777 (37%), Positives = 428/777 (55%), Gaps = 106/777 (13%)
Query: 162 PLDDRLKQSP--QHNALAVVKKEEIKDGNGLKSDDNDS--EDDKPLSARLKGNSKNVNQG 217
P+DD + P + N A K++ + + +S EDDKPLS R + ++K
Sbjct: 58 PIDDEDVEMPDAEVNGAAQTKRKSRASAANISYAEAESSEEDDKPLSKRRRTSTK----- 112
Query: 218 IGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSN---AGTSGAKPIDSDEKKPLASKV 274
+ P+ D+ PL SR ++ A T+ + EK + +
Sbjct: 113 ---------------RQVPDSDSDDAPLLSRPRRAQKLPAPTAAEGEELAAEKAEIEHRA 157
Query: 275 QQNGSTSRETQQKSSSV--PVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKK 332
+ R+ +++ ++ + R + KA + ++ +KP TSK + VK E+
Sbjct: 158 ESEAKAIRKHEREDAAKKKSIAR-VAKAEQTSQATKQKP----TSKRAQAN--GVKKEEP 210
Query: 333 ADDDDHIPISQRMKNSAPSVKKSVTNTA-KATKSVSSSSNKINKKTKKVIKNSQYSKSTK 391
+DDD P +K+VT A +A +S S+++ K K KK +++ +
Sbjct: 211 SDDD------------VPLRRKTVTKKAPQAARSKSTAAIKGGTKPKKEESEEAEAEAEE 258
Query: 392 ML-------PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVAT 442
P GDG KWTTL HNGV+FPPPY LP VKM Y G + L+ E EEVA
Sbjct: 259 EEEYRWWEDPAKGDGTIKWTTLEHNGVVFPPPYEPLPKNVKMKYDGVPITLSLEAEEVAG 318
Query: 443 MFAVMLDTDY-MQKPKFRENFWNDWRKLLGKNHVIQNLEG----------CDFKPIYDWH 491
F ML++ + ++ P F++NF+ D+ ++ K +N +G CDF+PI++++
Sbjct: 319 FFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKNPQGNAVPIKDFKKCDFQPIFEYY 378
Query: 492 QEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK 551
+ ++ +KK + + E+K LK EK+ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK
Sbjct: 379 EMKRLEKKALPAAERKRLKAEKDAAEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPK 438
Query: 552 MGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYV 611
G++K R+QP ITINIGK +P P G WKEVKHD TWLA W + IN +KYV
Sbjct: 439 TGRVKTRVQPEQITINIGKGAAVPPPPP-GHKWKEVKHDQEGTWLAMWQENIN-GNYKYV 496
Query: 612 FLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLAL 671
LAA+S +KGQSD +K+EKAR+LK +I IR Y K RQ A A YLID+ AL
Sbjct: 497 MLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYRKGLKDELTANRQRATAVYLIDQFAL 556
Query: 672 RAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
RAGNEK +DEADTVGCC+LK +V PPNK+ FDFLGKDSI++ + VEV+ V+K +
Sbjct: 557 RAGNEKGEDEADTVGCCSLKYEHVTLKPPNKVIFDFLGKDSIRFYDEVEVDHQVFKNLKF 616
Query: 732 FQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVA 790
F+ K + D++FD+L VFRTYNAS T+ +L + G V
Sbjct: 617 FKKAPKGEGDEIFDRLT------------------VFRTYNASYTMATLLKQMQATGTVH 658
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---R 844
K+ Y AN++VAI+CNH+RTV+ H+ QM +L+E+I+ L K +K + +DLD +
Sbjct: 659 EKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLSERIKGLSYQKWRIKQMMIDLDPKIK 718
Query: 845 AKKGKPPLMKDSD------GKRKRNLAPEA---LERKMAQTNAKIE-KMERDMKTKE 891
KKG DSD + + L E +++K + N K+ + E++MK KE
Sbjct: 719 KKKGPEFFQLDSDLDEEWVKQHQAFLVEEQRQKIQKKFEKENEKLRAEGEKEMKAKE 775
>gi|321463231|gb|EFX74248.1| hypothetical protein DAPPUDRAFT_109061 [Daphnia pulex]
Length = 543
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/567 (43%), Positives = 338/567 (59%), Gaps = 77/567 (13%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F Y LP VK Y G+E+ L+ EEV + +A MLD DY+ K F
Sbjct: 32 KWKSLEHKGPVFATQYEPLPGNVKFKYNGQEMKLSTAAEEVGSFYAAMLDHDYVTKDVFN 91
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +I +L+ CDF + + + + E++K + EEK LK E +
Sbjct: 92 KNFFKDWRKFMTHSEKEIITDLKKCDFTYMLTYFKAKSEERKNRTKEEKLQLKTENEEMV 151
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y W I+DG K+++GNF++EPPGLFRGRG+HPKMG +K+R+ P D+ IN K P+
Sbjct: 152 KEYGWCIIDGHKQRIGNFKIEPPGLFRGRGDHPKMGMVKRRVMPEDVIINCTKGTA-PKP 210
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+ DNTVTWLA W + +++GQ+
Sbjct: 211 P-PGHKWKEVRSDNTVTWLASW----------------TENVQGQT-------------- 239
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV-- 695
Y +D+ S++ RQ +VA Y IDKLALRAGNEKD+D+ADTVG C+L+V ++
Sbjct: 240 -------YKEDWKSKEMKIRQRSVALYFIDKLALRAGNEKDEDQADTVGACSLRVEHISL 292
Query: 696 -------ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+C+ + FDFLGKDSI+Y N V VE V+K + F KK DDLFD+L+T
Sbjct: 293 HEQKEGKQCV----VVFDFLGKDSIRYYNEVPVEKRVFKNLQIFMENKKPGDDLFDRLNT 348
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIIC 807
+N HL +LM GLTAKVFRT+NAS TL L++ T V KI Y RAN+ VAI+C
Sbjct: 349 TIMNKHLNDLMEGLTAKVFRTFNASNTLQEQLDELTDPKSSVTEKILAYNRANRAVAILC 408
Query: 808 NHQRTVSKTHSAQMSRLT-------EKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
NHQR V KT + M L E IED + KDL+ + AKK G
Sbjct: 409 NHQRAVPKTFAKSMENLQVKITAKREAIEDAEKSFKDLKKE---AKK---------TGSA 456
Query: 861 KRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
+A E+++ + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK+++V
Sbjct: 457 AAKIAAGKKEKQVEKLKEQLMKLEVQATDREENKEIALGTSKLNYLDPRISVAWCKKNDV 516
Query: 921 PIEKIFNKSLLAKFAWAMDV-DPEFRF 946
PIEKI+NK+ KF WA+D+ PEF F
Sbjct: 517 PIEKIYNKTQREKFQWAIDMAGPEFVF 543
>gi|367052525|ref|XP_003656641.1| hypothetical protein THITE_2121555 [Thielavia terrestris NRRL 8126]
gi|347003906|gb|AEO70305.1| hypothetical protein THITE_2121555 [Thielavia terrestris NRRL 8126]
Length = 842
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/455 (50%), Positives = 304/455 (66%), Gaps = 18/455 (3%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML-DT 450
P D KWTTL HNGV+FPPPY LP VK+ Y G+ V+L E EEVAT F ML T
Sbjct: 261 PKKEDDSIKWTTLEHNGVLFPPPYEPLPKHVKLYYDGQPVDLHVEAEEVATFFGSMLHST 320
Query: 451 DYMQKPKFRENFWNDWRKLLGKNHVIQNLEG----------CDFKPIYDWHQEQKEKKKQ 500
++ P F++NF+ND++ +L K +++ G DF I++ ++ + KK
Sbjct: 321 QNVENPVFQKNFFNDFKDILNKTGGAKDMNGNPVDIKEFKKLDFTKIFEHYKALSDAKKA 380
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ EKKA K K K E YM+ DG KEKVGNFRVEPPGLFRGRGEHPK G +KKR+
Sbjct: 381 RPAAEKKAEKAAKEKAEAPYMYCRWDGRKEKVGNFRVEPPGLFRGRGEHPKTGMVKKRVM 440
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P +TINIGKD +P+ P PG WK V+HDN TWLA W + +N +KYV LAA+S++K
Sbjct: 441 PEQVTINIGKDAKVPDPP-PGHKWKAVQHDNKATWLAMWQENVN-GNYKYVMLAANSTVK 498
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-D 679
GQ+D +K+EKAR+LK +I IRA YT++ S RQ A A YLIDK ALRAGNEKD +
Sbjct: 499 GQADFKKFEKARELKKHIDRIRADYTRELKSEVMADRQRATAMYLIDKFALRAGNEKDTE 558
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQ 738
+EA+TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++
Sbjct: 559 NEAETVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFVVDRQVFKNLKMFKKPPKEE 618
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQ 797
DD+FD+L T++LN HL MPGLTAKVFRTYNAS T+ +L K + +A KI +Y
Sbjct: 619 GDDIFDRLTTSQLNKHLSSYMPGLTAKVFRTYNASWTMSQLLQKLKVENRTMAEKIKLYN 678
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
N+EVAI+CNH+RTV +H AQM +L ++I+ LK
Sbjct: 679 DCNREVAILCNHKRTVGASHEAQMEKLGDRIKGLK 713
>gi|116181974|ref|XP_001220836.1| hypothetical protein CHGG_01615 [Chaetomium globosum CBS 148.51]
gi|88185912|gb|EAQ93380.1| hypothetical protein CHGG_01615 [Chaetomium globosum CBS 148.51]
Length = 907
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 292/707 (41%), Positives = 397/707 (56%), Gaps = 57/707 (8%)
Query: 152 SPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLK-SDDNDSEDDKPLSARLKGN 210
+P S P+DDR+ N V +K G +K DD+DSED PL+ R K
Sbjct: 41 APPGLSIRHGPVDDRMDIDSTPNG-TVKRKSRSSIGQAVKYKDDSDSEDAVPLAKRQKSQ 99
Query: 211 SKNVNQGIGASKADAAISEVNVKTDP---------EDSDDEVPLSSRFPKSNAGTSGAKP 261
K V+ + D I+ N P E SDD+ PL ++ + AG A
Sbjct: 100 HKKVD----SDSDDVPIARKNGSKLPPSIKETATLESSDDDQPLGTKIAQRKAGIEKAAA 155
Query: 262 IDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVK 321
++ + A + + + +++S P+ +P +K S+G SSAKK
Sbjct: 156 KEARAIR--ADAKTKKPTPKKAIKEESDDEPLAKP-KKRQSNGVSSAKK----------- 201
Query: 322 VKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVI 381
T V+K+ D D + K + K T K K V S K+ +
Sbjct: 202 ----TNGVKKEESDSDAPIAKKGKKAAPAPKKGKATPPDKGGKPVKDES----KENSEGE 253
Query: 382 KNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEE 439
+Y P D KWTTL H+GV+FPP Y LP VK+LY G+ V+L E EE
Sbjct: 254 DEEEYRWWD--APKKEDDSVKWTTLEHSGVLFPPEYERLPKNVKLLYDGQPVDLHIEAEE 311
Query: 440 VATMFAVML-DTDYMQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIY 488
VAT F ML T ++ P F++NF+ D++ +L GK I+ + DF I+
Sbjct: 312 VATFFGSMLHSTQNVENPVFQKNFFADFKDILKKTGGAKDKQGKPVDIKEFKKLDFTKIF 371
Query: 489 DWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 548
D ++ + +K + EKKA K EK+K E +M+ DG KEKVGNFRVEPPGLFRGRGE
Sbjct: 372 DHYKALGDARKARPAAEKKAEKAEKDKAEGHFMFCKWDGRKEKVGNFRVEPPGLFRGRGE 431
Query: 549 HPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEF 608
HPK G +KKR+ P +TINIGKD +P P PG WK V+HDN TWLA W + +N +
Sbjct: 432 HPKTGTVKKRVMPEQVTINIGKDAKVP-APPPGHKWKAVQHDNKATWLAMWQENVN-GNY 489
Query: 609 KYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDK 668
KYV LAA+S++KGQ+D +K+EKAR LK +I IRA YT++ S RQ A A YLID+
Sbjct: 490 KYVMLAANSTVKGQADFKKFEKARDLKKHIDRIRADYTRELKSEVMADRQRATAMYLIDR 549
Query: 669 LALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYK 727
ALRAGNEKD ++EA+TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K
Sbjct: 550 FALRAGNEKDTENEAETVGCCSLKFEHVTLREPNTVIFDFLGKDSIRFYNEFSVDRQVFK 609
Query: 728 AIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTG 785
+ F+ K++ DD+FD+L T++LN HL M GLTAKVFRTYNAS T+ +L K
Sbjct: 610 NLKVFKKSPKEDGDDIFDRLTTSQLNKHLSSYMTGLTAKVFRTYNASWTMSQLLQKLEVE 669
Query: 786 DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
D +A KI +Y N+EVAI+CNH+RTV H AQM +L ++I+ LK
Sbjct: 670 DRTMAEKIKLYNDCNREVAILCNHKRTVGAGHEAQMEKLGDRIKGLK 716
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E L + + + +I +E +E K VALGTSKINY+DPR+TV + + +VPIEK F
Sbjct: 825 EKLTTAVEKLDERIRTLEMQSADREGNKEVALGTSKINYIDPRLTVVFSNKFQVPIEKFF 884
Query: 927 NKSLLAKFAWAM 938
+K+L KF WA+
Sbjct: 885 SKTLRDKFNWAI 896
>gi|358377736|gb|EHK15419.1| hypothetical protein TRIVIDRAFT_37938 [Trichoderma virens Gv29-8]
Length = 914
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 280/702 (39%), Positives = 384/702 (54%), Gaps = 101/702 (14%)
Query: 331 KKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKST 390
KK + D PIS+++K ++ S K +AK TK + +K + ++ + ++
Sbjct: 209 KKEESDSDAPISKKVKPASASAKGKKAASAKDTKDIKKGKSKEPSEEEEEEEFEWWN--- 265
Query: 391 KMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML 448
P D KW TL HNGV+F P Y LP VKM Y GK V L E EEVAT + M+
Sbjct: 266 --APKKEDDSIKWKTLEHNGVLFAPEYEPLPKHVKMYYDGKPVTLGLEAEEVATFWVAMM 323
Query: 449 ---DTDYMQKPKFRENFWNDWRKLLGKNHV---------IQNLEGCDFKPIYDWHQEQKE 496
T ++ P FR+NF+ D+ + + K+ I++L+ CDF + ++ + E
Sbjct: 324 TAASTHHLDNPIFRKNFFTDFSEYIKKHGAKDAQGNKVDIKSLDKCDFSKMQEYWAAKNE 383
Query: 497 KKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
KK M+ EEK A K EK+ E Y++ DG K+KVGNFRVEPP LFRGRGEHPK GK+K
Sbjct: 384 AKKSMTKEEKAAAKAEKDALEAPYLYCTWDGRKQKVGNFRVEPPSLFRGRGEHPKTGKVK 443
Query: 557 KRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAS 616
R+ P ITINIGK +P P G WK V+HD TWLA W + IN +KYV L A+
Sbjct: 444 VRVLPEQITINIGKGAKVP-APPAGHKWKAVQHDQKATWLAMWQENIN-GAYKYVMLGAA 501
Query: 617 SSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE 676
S +KGQSD +K+EKAR+LK +I IR YTKD S RQ A A YLIDKLALRAGNE
Sbjct: 502 SDVKGQSDYKKFEKARELKKHIDKIRRDYTKDLKSEVMADRQRATAMYLIDKLALRAGNE 561
Query: 677 KD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG 735
KD ++EADTVGCC+LK ++ PP+++ FDFLGKDSI+Y T V+ V+K + F+
Sbjct: 562 KDTENEADTVGCCSLKYEHISLQPPDQVTFDFLGKDSIRYNETARVDPQVFKNLKLFKKA 621
Query: 736 KKQN-DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGD----GDVA 790
K + DDLFD+L+T++LN HL MPGLTAKVFRTYNAS T+ +L + D G +A
Sbjct: 622 PKTDGDDLFDRLNTSQLNKHLNSYMPGLTAKVFRTYNASHTMSELLKELGKDPRSRGTIA 681
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---R 844
K+ +Y N++VAI+CNH+RTV H QM +L ++I+ L K K + +D+D +
Sbjct: 682 EKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQKLGDRIKGLRYQKWRTKKMILDIDPTQK 741
Query: 845 AKKGKPPLMKDSDG-------------KRKRNLAPEALERKMAQTNAKIEKMERDMKTKE 891
KKG KD D + +R + E+ + A E++ + + KE
Sbjct: 742 KKKGAAFFEKDEDLDDEWIKEHQQFLIEEQRTKITKKFEKDNEKLKANKERVLPEKELKE 801
Query: 892 DLKTVALGTSK-------------------------INYLDPRITV-------------- 912
L+ V +K I+ LD RI V
Sbjct: 802 RLQAVKELETKFKKENKTNKVEAEGRGPSVEKFMAAIDKLDERIRVFETQAEDRDGNKEV 861
Query: 913 ----------------AWCKRHEVPIEKIFNKSLLAKFAWAM 938
+ K+ +VPIEK F+K+L KF WA+
Sbjct: 862 ALSTSKINYIDPRLTVVFSKKFDVPIEKFFSKTLRDKFRWAI 903
>gi|310790996|gb|EFQ26529.1| eukaryotic DNA topoisomerase I [Glomerella graminicola M1.001]
Length = 907
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 276/669 (41%), Positives = 383/669 (57%), Gaps = 60/669 (8%)
Query: 193 DDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDP----------EDSDDE 242
D+++S+DD PL+ R K +K D ++ K P E SDD+
Sbjct: 80 DESESDDDAPLAKRQKTKTK----APETDSDDEPLTSRRGKNLPPSYKETALPDESSDDD 135
Query: 243 VPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPV-KRPLQKAS 301
PL +R K A A ++ + +K ++ + S P+ K ++K
Sbjct: 136 QPLGARLAKKKADIEKAAAKEARSIRANEAKAKKATPKKPVKDESSDDEPLAKSAIKKRQ 195
Query: 302 SSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQR-MKNSAPSVKKSVTNTA 360
S+GA S KK + VK E +D+ PI+++ K + P+ T
Sbjct: 196 SNGAGSTKK------------RPNGVKAESDSDE----PIAKKAAKRATPA-----KATV 234
Query: 361 KATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--L 418
K+ + + + + + ++ K P D KWTTL HNGV+FPP Y L
Sbjct: 235 AKGKAAAKAKQESEAPEEDEEEEYEWWKD----PKKEDDSVKWTTLEHNGVMFPPEYQPL 290
Query: 419 PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL------- 470
P VK++Y GK VNL E EEVA F ML++ + + P F++NF++D++ +L
Sbjct: 291 PKNVKLVYDGKPVNLPIEAEEVAGFFGAMLNSKHNVDNPVFQKNFFDDFKAVLKESGHAT 350
Query: 471 ---GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDG 527
G I+ +F+ I+ ++++Q +K S+ EKKA K EK++ E +M+ DG
Sbjct: 351 DKQGNKVDIREFSKMNFEQIFQYYEQQSAIRKNRSAAEKKAAKAEKDELEAPFMYCKWDG 410
Query: 528 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEV 587
KEKVGNFRVEPP LFRGRGEHPK GKLKKR+ P ITINIGKD +PE P G WK V
Sbjct: 411 RKEKVGNFRVEPPSLFRGRGEHPKTGKLKKRVYPEQITINIGKDAKVPEPP-KGHKWKAV 469
Query: 588 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTK 647
HDN TWLA W + IN +KYV L A+S++KGQSD +K+EKAR+LK +I IR YTK
Sbjct: 470 VHDNKATWLAMWQENIN-GAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDKIRRDYTK 528
Query: 648 DFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFD 706
D S RQ A A YLIDK ALRAGNEKD ++EA+TVGCC+LK ++ PN + FD
Sbjct: 529 DLKSEIMADRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHITLREPNTVIFD 588
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPGLTAK 765
FLGKDSI++ + V VE V+K + F+ K + DD+FD+L T +LN HLK MPGLTAK
Sbjct: 589 FLGKDSIRFYDEVTVEKQVFKNLKLFKKPPKTDGDDIFDRLTTTQLNNHLKNYMPGLTAK 648
Query: 766 VFRTYNASITLDGMLNKGTGDGD--VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
VFRTYNAS T+ +L K + +A K+ +Y N+EVAI+CNH+RTV H AQM +
Sbjct: 649 VFRTYNASFTMSNLLQKLVDHKNLTIAEKVKLYNDCNREVAILCNHKRTVGAAHEAQMEK 708
Query: 824 LTEKIEDLK 832
L ++I+ L+
Sbjct: 709 LGDRIKGLR 717
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R+ + E L+ ++ + + +++ +E ++ K VAL TSKINY+DPR+TV + K+ +VP
Sbjct: 821 RSPSIEKLDEQVKKFDDRVKTLELQAADRDGNKEVALSTSKINYIDPRLTVVFAKKFDVP 880
Query: 922 IEKIFNKSLLAKFAWAM----DVDPEF 944
IEK F+K+L KF+WA+ D D EF
Sbjct: 881 IEKFFSKTLRDKFSWAIKSVEDDDWEF 907
>gi|336464234|gb|EGO52474.1| DNA topoisomerase I [Neurospora tetrasperma FGSC 2508]
Length = 870
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 296/451 (65%), Gaps = 18/451 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
D KWTTL HNGVIFP Y LP VK+LY G V L E EE AT F ML+ T ++
Sbjct: 231 DDSIKWTTLEHNGVIFPEDYQRLPKDVKLLYDGTPVELDIEAEEAATFFGFMLNSTVNVE 290
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L GK I+ E DF ++ + Q + K SS
Sbjct: 291 NPTFQKNFFRDFKEILDRTGGAKDKNGKKVDIKEFEKLDFSQLWAYKDAQTKAKNARSSA 350
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA K E++K++ Y++ DG KEKVGN RVE PGLFRGRG+HPK G +KKR+ P I
Sbjct: 351 EKKAEKAERDKRDAPYLYCKWDGRKEKVGNPRVEIPGLFRGRGDHPKTGCIKKRVLPEQI 410
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +PE P G WK V+HDN TWLA W + IN +KYV LAA+S++KG++D
Sbjct: 411 TINIGKEAKVPEPP-AGHKWKAVQHDNKATWLAMWQENING-HYKYVMLAANSTVKGKAD 468
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK YI IRA YTKD S RQ A A YLIDK ALRAGNEKD ++EA+
Sbjct: 469 FKKFEKARELKKYIDRIRADYTKDLKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAE 528
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++ DD+
Sbjct: 529 TVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEDGDDI 588
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGLTAKVFRTYNAS T+ +L + + V K+ +Y N+
Sbjct: 589 FDRLTTTQLNKHLSSYMPGLTAKVFRTYNASYTMSKLLQELKVTNATVHEKVKLYNDCNR 648
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
+VAI+CNH+RTV +H QM +L E+I+ L+
Sbjct: 649 QVAILCNHKRTVGASHEQQMKKLVEQIKGLR 679
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +I+ +E +E K VALGTSKINY+DPR+TV + + VPIEK F
Sbjct: 788 EKLEAALLKLDQRIQTLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIEKFF 847
Query: 927 NKSLLAKFAWAMD 939
+K+L KF WA++
Sbjct: 848 SKTLREKFKWAIE 860
>gi|164424928|ref|XP_958033.2| DNA topoisomerase I [Neurospora crassa OR74A]
gi|157070718|gb|EAA28797.2| DNA topoisomerase I [Neurospora crassa OR74A]
Length = 874
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 296/451 (65%), Gaps = 18/451 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
D KWTTL HNGVIFP Y LP VK+LY G V L E EE AT F ML+ T ++
Sbjct: 235 DDSIKWTTLEHNGVIFPEDYQRLPKDVKLLYDGTPVELDIEAEEAATFFGFMLNSTVNVE 294
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L GK I+ E DF ++ + Q + K SS
Sbjct: 295 NPTFQKNFFRDFKEILDRTGGAKDKNGKKVDIKEFEKLDFSQLWAYKDAQTKAKNARSSA 354
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA K E++K++ Y++ DG KEKVGN RVE PGLFRGRG+HPK G +KKR+ P I
Sbjct: 355 EKKAEKAERDKRDAPYLYCKWDGRKEKVGNPRVEIPGLFRGRGDHPKTGCIKKRVLPEQI 414
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +PE P G WK V+HDN TWLA W + IN +KYV LAA+S++KG++D
Sbjct: 415 TINIGKEAKVPEPP-AGHKWKAVQHDNKATWLAMWQENING-HYKYVMLAANSTVKGKAD 472
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK YI IRA YTKD S RQ A A YLIDK ALRAGNEKD ++EA+
Sbjct: 473 FKKFEKARELKKYIDRIRADYTKDLKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAE 532
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++ DD+
Sbjct: 533 TVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEDGDDI 592
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGLTAKVFRTYNAS T+ +L + + V K+ +Y N+
Sbjct: 593 FDRLTTTQLNKHLSSYMPGLTAKVFRTYNASYTMSKLLQELKVTNATVHEKVKLYNDCNR 652
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
+VAI+CNH+RTV +H QM +L E+I+ L+
Sbjct: 653 QVAILCNHKRTVGASHEQQMKKLVEQIKGLR 683
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +I+ +E +E K VALGTSKINY+DPR+TV + + VPIEK F
Sbjct: 792 EKLEAALEKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIEKFF 851
Query: 927 NKSLLAKFAWAMD 939
+K+L KF WA++
Sbjct: 852 SKTLREKFKWAIE 864
>gi|350296318|gb|EGZ77295.1| DNA topoisomerase I [Neurospora tetrasperma FGSC 2509]
Length = 870
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 296/451 (65%), Gaps = 18/451 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
D KWTTL HNGVIFP Y LP VK+LY G V L E EE AT F ML+ T ++
Sbjct: 231 DDSIKWTTLEHNGVIFPEDYQRLPKDVKLLYDGTPVELDIEAEEAATFFGFMLNSTVNVE 290
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L GK I+ E DF ++ + Q + K SS
Sbjct: 291 NPTFQKNFFRDFKEILDRTGGAKDKNGKKVDIKEFEKLDFSQLWAYKDAQTKAKNARSSA 350
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA K E++K++ Y++ DG KEKVGN RVE PGLFRGRG+HPK G +KKR+ P I
Sbjct: 351 EKKAEKAERDKRDAPYLYCKWDGRKEKVGNPRVEIPGLFRGRGDHPKTGCIKKRVLPEQI 410
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +PE P G WK V+HDN TWLA W + IN +KYV LAA+S++KG++D
Sbjct: 411 TINIGKEAKVPEPP-AGHKWKAVQHDNKATWLAMWQENING-HYKYVMLAANSTVKGKAD 468
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK YI IRA YTKD S RQ A A YLIDK ALRAGNEKD ++EA+
Sbjct: 469 FKKFEKARELKKYIDRIRADYTKDLKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAE 528
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++ DD+
Sbjct: 529 TVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEDGDDI 588
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGLTAKVFRTYNAS T+ +L + + V K+ +Y N+
Sbjct: 589 FDRLTTTQLNKHLSSYMPGLTAKVFRTYNASYTMSKLLQELKVTNATVHEKVKLYNDCNR 648
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
+VAI+CNH+RTV +H QM +L E+I+ L+
Sbjct: 649 QVAILCNHKRTVGASHEQQMKKLVEQIKGLR 679
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +I+ +E +E K VALGTSKINY+DPR+TV + + VPIEK F
Sbjct: 788 EKLEAALLKLDQRIKTLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIEKFF 847
Query: 927 NKSLLAKFAWAMD 939
+K+L KF WA++
Sbjct: 848 SKTLREKFKWAIE 860
>gi|156045655|ref|XP_001589383.1| hypothetical protein SS1G_10018 [Sclerotinia sclerotiorum 1980]
gi|154694411|gb|EDN94149.1| hypothetical protein SS1G_10018 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 911
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 263/636 (41%), Positives = 364/636 (57%), Gaps = 92/636 (14%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P D KW TL HNGV+FPP Y LP VK+ Y G + L+ E EE+A F ML++
Sbjct: 268 PKKEDDSIKWETLQHNGVVFPPEYEPLPKNVKLGYDGIPLTLSLESEEIAGFFGAMLNST 327
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ D+ + G I++ DFKPI++++ + ++K
Sbjct: 328 HNVENPTFQKNFFKDFTDSVKKTGGAKDKDGNKVAIKDFSKLDFKPIFEYYDGKSTERKA 387
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
S+ EKKA K K++ E Y I DG KE VGNFRVEPPGLFRGRGEHPK GK+K R+
Sbjct: 388 RSAAEKKAEKAAKDEAEAPYKTCIWDGRKEDVGNFRVEPPGLFRGRGEHPKTGKVKLRVT 447
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P G WK ++HDN TWLA W + IN +KYV LAA SS+K
Sbjct: 448 PEQITINIGKEATVP-SPPEGHKWKAIQHDNKATWLAMWQENIN-GAYKYVMLAAKSSIK 505
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-D 679
GQSD +K+EKAR+LK++I IR YT+D + RQ A A YLIDK ALRAGNEKD +
Sbjct: 506 GQSDYKKFEKARELKEHIDRIRKDYTQDLHAELMADRQRATAVYLIDKFALRAGNEKDAE 565
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN 739
+EA+TVGCC+LK +V PPN + FDFLGKDSI++ + V V+ V+K + F+ K+N
Sbjct: 566 NEAETVGCCSLKYEHVTLKPPNTVIFDFLGKDSIRFYDEVTVDPQVFKNLKIFKKAPKKN 625
Query: 740 -DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQ 797
DD+FD+L+T +LN HL MPGL+AKVFRTYNAS T+ +L K D + KI +Y
Sbjct: 626 GDDIFDRLNTTQLNKHLTNYMPGLSAKVFRTYNASWTMSDLLKKLKNSDISMQEKIKLYN 685
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPP 851
N++VAI+CNH+RTV +H A + ++ + ++ L K LK + +DLD + KKG
Sbjct: 686 DCNRKVAILCNHKRTVGASHEAAIEKMDDAVKGLKYQKWRLKQMILDLDPKQKKKKGADW 745
Query: 852 LMKDSDGKRKRNLAPEA---------LERKMAQTNAK-IEKMERDMKTKE---------D 892
D + +A +E+K A+ N K + + +++MKTKE D
Sbjct: 746 FALDEELDEAWIQEHQAFLVAQERIKIEKKFAKENEKLVSEGQKEMKTKELNERLQAATD 805
Query: 893 LK-------------------TVALGTSKINYLDPRI----------------------- 910
L+ +V + I +D RI
Sbjct: 806 LEKKFKKENKSKKVEAEGKGSSVEKFEANITKIDERIANMLLKREDREGNKEVALGTSKI 865
Query: 911 -------TVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
TV + ++ +VPIEK F+K+L KFAWA+D
Sbjct: 866 NYIDPRLTVVFSQKFDVPIEKFFSKTLREKFAWAID 901
>gi|308504900|ref|XP_003114633.1| CRE-TOP-1 protein [Caenorhabditis remanei]
gi|308258815|gb|EFP02768.1| CRE-TOP-1 protein [Caenorhabditis remanei]
Length = 720
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/444 (52%), Positives = 292/444 (65%), Gaps = 20/444 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+ + L+ E EE AT +A +LD +Y F
Sbjct: 260 KWNSLQHCGPLFAPPYVPLPDHVHFKYNGERMKLSLEAEECATFYAGVLDHEYSTMDAFN 319
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK++ G+ I +L+ CDF+ I + +EQ+E +K M+ EEK +KEEK +
Sbjct: 320 KNFMKDWRKVMTTGERERIVDLKKCDFRAIDVYQKEQREIRKAMTKEEKLKIKEEKEGEV 379
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y A++DG ++K+ NFR+EPPG+FRGRG HPKMG LK+RI+P D+ IN GKD IP+
Sbjct: 380 KIYGIAVIDGHRQKIANFRIEPPGVFRGRGGHPKMGMLKRRIRPEDVIINCGKDTEIPKP 439
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 440 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDYEKYETARRLKKK 497
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR YT+DF S++ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+ +++
Sbjct: 498 IGGIRERYTEDFKSKEMRIRQRATALYFIDKLALRAGNEKDVDESADTVGCCSLRYEHIK 557
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE V+K + F KK DDLFD
Sbjct: 558 LFDSAKLNETDKKEKEFVVEFDFLGKDSIRYYNRVAVEKRVFKNLKLFMENKKPGDDLFD 617
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 618 RLDTATLNEHLRSLMDGLTVKVFRTYNASITLQDQLLKLTNPKDNVAAKILSYNRANRQV 677
Query: 804 AIICNHQRTVSKTHSAQMSRLTEK 827
AI+CNHQR VSKT M +L +K
Sbjct: 678 AILCNHQRAVSKTFDQSMEKLEQK 701
>gi|171687333|ref|XP_001908607.1| hypothetical protein [Podospora anserina S mat+]
gi|170943628|emb|CAP69280.1| unnamed protein product [Podospora anserina S mat+]
Length = 904
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/455 (50%), Positives = 297/455 (65%), Gaps = 18/455 (3%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML-DT 450
P D KWTTL HNGV+FPP Y LP VK++Y G VNL + EEVAT F ML T
Sbjct: 261 PKKEDDSIKWTTLEHNGVLFPPAYEPLPKDVKLIYDGTPVNLHVDAEEVATFFGAMLHST 320
Query: 451 DYMQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
++ P F++NF+ D+R +L GK I+ DF I+++++ E KK
Sbjct: 321 QNVENPTFQKNFFKDFRDVLKETGGAKDQNGKPVDIKEFAKLDFTKIFEYYKGLSEAKKA 380
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ EKKA K EK+K E YM+ DG KEKVGNFRVEPPGLFRGRGEHPK G +KKR+
Sbjct: 381 RPAAEKKAEKAEKDKFEAPYMYCKWDGRKEKVGNFRVEPPGLFRGRGEHPKTGTVKKRVM 440
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P +TINIGK+ +P+ P G WK V+HDN TWLA W + +N +KYV LAA+S++K
Sbjct: 441 PEQVTINIGKEAKVPDPPA-GHKWKAVQHDNKATWLAMWQENVN-GNYKYVMLAANSTVK 498
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-D 679
GQ+D +K+EKAR+L +I IRA YT + S RQ A A YLIDK ALRAGNEKD +
Sbjct: 499 GQADYKKFEKARELNKHIARIRADYTAELKSEIMAERQRATAMYLIDKFALRAGNEKDTE 558
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQ 738
+EA+TVGCC+LK +V PN + FDFLGKDSI++ N VE V+K + F+ K
Sbjct: 559 NEAETVGCCSLKFEHVTLREPNTVIFDFLGKDSIRFYNEFTVERQVFKNLKLFKKPPKAD 618
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQ 797
DD+FD+L T++LN HL MPGLTAKVFRTYNAS T+ +L + +A KI +Y
Sbjct: 619 GDDIFDRLTTSQLNKHLSNYMPGLTAKVFRTYNASHTMSTLLQSLSVENRTMAEKIKLYN 678
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
N+EVA+ICNH+RTV H AQM +L ++I+ LK
Sbjct: 679 DCNREVAVICNHKRTVGAAHEAQMEKLADRIKGLK 713
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
A E LE +++ + +I+ +E +E K VALGTSKINY+DPR+TV + K+ VPIEK
Sbjct: 820 AVEKLEAAVSKFDDRIKTLELQCADREGNKEVALGTSKINYIDPRLTVVFAKKFNVPIEK 879
Query: 925 IFNKSLLAKFAWAMD 939
F+K+L KF WA++
Sbjct: 880 FFSKTLRDKFKWAIE 894
>gi|380495631|emb|CCF32247.1| eukaryotic DNA topoisomerase I [Colletotrichum higginsianum]
Length = 918
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 272/673 (40%), Positives = 378/673 (56%), Gaps = 59/673 (8%)
Query: 194 DNDSEDDKPLSARLKGNSK-------------NVNQGIGASKADAAISEVNVKTDPEDSD 240
D +S+DD PL+ R K K + + S + A+ + E SD
Sbjct: 81 DTESDDDAPLAKRQKTKPKIPETDSDDEPLTSKRGKNLPPSYKETALPD-------ESSD 133
Query: 241 DEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPV-KRPLQK 299
D+ PL ++ K A A ++ + +K ++ ++ S P+ K +K
Sbjct: 134 DDQPLGAKLAKKKADIEKAAAKEARTIRASEAKAKKATPKKAVKEESSDDEPLAKSATKK 193
Query: 300 ASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNT 359
S+GA SAK+ K +KVE +D+ PI++++ K
Sbjct: 194 RQSNGAGSAKR------------KSNGMKVESDSDE----PIAKKVAKKGTPAKAPAAKG 237
Query: 360 AKATKSVSSSSNKINKKTKKVIKNSQYSKSTKML---PGSGDGQKKWTTLVHNGVIFPPP 416
A + + +K ++ + + P D KWTTL HNGV+FPP
Sbjct: 238 KAAASAKAPGKKADSKAKQESEAPEEEEEEEYEWWKDPKKEDDSVKWTTLEHNGVMFPPE 297
Query: 417 Y--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-MQKPKFRENFWNDWRKLL--- 470
Y LP VK+LY GK VNL E EEVA F ML++ + + P F++NF++D++ +L
Sbjct: 298 YQPLPKNVKLLYDGKPVNLPIEAEEVAGFFGAMLNSKHNVDNPVFQKNFFDDFKAVLKES 357
Query: 471 -------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWA 523
G ++ +F+ I+ ++++Q +K S EKKA K EK++ E +M+
Sbjct: 358 GHATDKQGNKVDLKEFSKMNFEQIFQYYEQQSAIRKTRSPAEKKAAKAEKDELEAPFMYC 417
Query: 524 IVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGES 583
DG KEKVGNFRVEPP LFRGRGEHPK G+LKKR+ P ITINIGK IPE P G
Sbjct: 418 KWDGRKEKVGNFRVEPPSLFRGRGEHPKTGRLKKRVYPEQITINIGKGAKIPEPP-KGHK 476
Query: 584 WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRA 643
WK V HDN TWLA W + IN +KYV L A+S++KGQSD +K+EKAR+LK +I IR
Sbjct: 477 WKTVVHDNKATWLAMWQENIN-GAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDKIRR 535
Query: 644 AYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNK 702
YTKD S RQ A A YLIDK ALRAGNEKD ++EA+TVGCC+LK ++ PN
Sbjct: 536 DYTKDLKSEVMADRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHITLREPNT 595
Query: 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDLFDKLDTAKLNAHLKELMPG 761
+ FDFLGKDSI++ + V VE V+K + F+ K + DD+FD+L T +LN HLK MPG
Sbjct: 596 VIFDFLGKDSIRFYDEVTVEKQVFKNLKLFKKPPKTDGDDIFDRLTTTQLNNHLKNYMPG 655
Query: 762 LTAKVFRTYNASITLDGMLNKGTGDGD--VAVKIDVYQRANKEVAIICNHQRTVSKTHSA 819
LTAKVFRTYNAS T+ +L K + +A K+ +Y N+EVAI+CNH+RTV H A
Sbjct: 656 LTAKVFRTYNASFTMSTLLQKLVDHKNLTIAEKVKLYNDCNREVAILCNHKRTVGAAHEA 715
Query: 820 QMSRLTEKIEDLK 832
QM +L ++I+ L+
Sbjct: 716 QMEKLGDRIKGLR 728
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R+ + E L+ ++ + + +++ +E ++ K VAL TSKINY+DPR+TV + K+ +VP
Sbjct: 832 RSPSVEKLDEQVKKFDDRVKTLELQAADRDGNKEVALSTSKINYIDPRLTVVFAKKFDVP 891
Query: 922 IEKIFNKSLLAKFAWAM----DVDPEF 944
IEK F+K+L KF+WA+ D D EF
Sbjct: 892 IEKFFSKTLRDKFSWAIKSVEDEDWEF 918
>gi|323335697|gb|EGA76980.1| Top1p [Saccharomyces cerevisiae Vin13]
Length = 533
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/535 (44%), Positives = 331/535 (61%), Gaps = 77/535 (14%)
Query: 487 IYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGR 546
++D+ Q QKE+KKQ++S+EKK ++ E+ K EE Y + +DG +E+VGNF+VEPP LFRGR
Sbjct: 1 MFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGR 60
Query: 547 GEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPK 606
G HPK GKLK+R+ P DI +N+ KD P+P P G W E++HDNTV WLA W + I
Sbjct: 61 GAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-N 118
Query: 607 EFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLI 666
FKYV LAA+SSLKGQSD +K+EKAR+LK YI +IR YT++ S+ RQ AVA YLI
Sbjct: 119 SFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKXMLERQKAVAIYLI 178
Query: 667 DKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVY 726
D ALRAG EK +DEADTVGCC+L+ +V PPN + FDFLGKDSI++ VEV+ V+
Sbjct: 179 DVFALRAGGEKSEDEADTVGCCSLRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVF 238
Query: 727 KAIGQFQTGKKQ-NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG 785
K + F+ KQ LFD+LD + LN +L+ MPGLTAKVFRTYNAS T+ L+
Sbjct: 239 KNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPN 298
Query: 786 DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL--------KGVL-- 835
G VA KI Y AN+ VAI+CNHQRTV+K H+ + + +I++L + +L
Sbjct: 299 KGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQL 358
Query: 836 -KDL---------RVD--------------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA 868
KDL +D +DR +K + ++++D ++ K L PE+
Sbjct: 359 DKDLLKKEPKYFEEIDDLTKEDEATIHKRIIDREXEKYQRKFVRENDKRKFEKEELLPES 418
Query: 869 -LERKMAQTNAKIEKMERDMKT-----------------------------------KED 892
L+ + + + K ++ E+++KT KE+
Sbjct: 419 QLKEWLEKVDEKKQEFEKELKTGEVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEE 478
Query: 893 LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
V+LGTSKINY+DPR++V +CK+++VPIEKIF K+L KF WA++ VD +RF
Sbjct: 479 NSQVSLGTSKINYIDPRLSVVFCKKYDVPIEKIFTKTLREKFKWAIESVDENWRF 533
>gi|380090637|emb|CCC11632.1| putative TOP1 protein [Sordaria macrospora k-hell]
Length = 919
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/451 (49%), Positives = 296/451 (65%), Gaps = 18/451 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
D KWTTL HNGVIFP Y LP VK+LY G V L E EE AT F ML+ T ++
Sbjct: 280 DDSIKWTTLEHNGVIFPEDYQRLPKDVKLLYDGTPVELDIEAEEAATFFGFMLNSTVNVE 339
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L GK I+ E DF ++ + Q + K SS
Sbjct: 340 NPTFQKNFFRDFKEILDRTGGAKDKNGKKVDIKEFEKLDFSQLWAYKDAQTKAKNARSSA 399
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA K E++ ++ Y++ DG KEKVGN RVE PGLFRGRG+HPK G +KKR+ P I
Sbjct: 400 EKKAEKAERDTRDAPYLYCKWDGRKEKVGNPRVEIPGLFRGRGDHPKTGCIKKRVLPEQI 459
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +P+ P G WK V+HDN TWLA W + IN +KYV LAA+S++KG++D
Sbjct: 460 TINIGKEAKVPDPP-AGHKWKAVQHDNKATWLAMWQENING-HYKYVMLAANSTVKGKAD 517
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK +I IRA YTKD S RQ A A YLIDK ALRAGNEKD ++EA+
Sbjct: 518 FKKFEKARELKKHIDRIRADYTKDLKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAE 577
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++ DD+
Sbjct: 578 TVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEDGDDI 637
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGLTAKVFRTYNAS T+ +L + + VA K+ +Y N+
Sbjct: 638 FDRLTTTQLNKHLSSYMPGLTAKVFRTYNASYTMSKLLQELKVTNATVAEKVKLYNDCNR 697
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
+VAI+CNH+RTV +H QM +L E+I+ L+
Sbjct: 698 QVAILCNHKRTVGASHEQQMKKLVEQIKGLR 728
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +I+ +E +E K VALGTSKINY+DPR+TV + + VPIEK F
Sbjct: 837 EKLEAALVKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIEKFF 896
Query: 927 NKSLLAKFAWAMD 939
+K+L KF WA++
Sbjct: 897 SKTLREKFKWAIE 909
>gi|336261184|ref|XP_003345383.1| TOP1 protein [Sordaria macrospora k-hell]
Length = 912
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/451 (49%), Positives = 296/451 (65%), Gaps = 18/451 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
D KWTTL HNGVIFP Y LP VK+LY G V L E EE AT F ML+ T ++
Sbjct: 273 DDSIKWTTLEHNGVIFPEDYQRLPKDVKLLYDGTPVELDIEAEEAATFFGFMLNSTVNVE 332
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D++++L GK I+ E DF ++ + Q + K SS
Sbjct: 333 NPTFQKNFFRDFKEILDRTGGAKDKNGKKVDIKEFEKLDFSQLWAYKDAQTKAKNARSSA 392
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA K E++ ++ Y++ DG KEKVGN RVE PGLFRGRG+HPK G +KKR+ P I
Sbjct: 393 EKKAEKAERDTRDAPYLYCKWDGRKEKVGNPRVEIPGLFRGRGDHPKTGCIKKRVLPEQI 452
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +P+ P G WK V+HDN TWLA W + IN +KYV LAA+S++KG++D
Sbjct: 453 TINIGKEAKVPDPP-AGHKWKAVQHDNKATWLAMWQENING-HYKYVMLAANSTVKGKAD 510
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK +I IRA YTKD S RQ A A YLIDK ALRAGNEKD ++EA+
Sbjct: 511 FKKFEKARELKKHIDRIRADYTKDLKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAE 570
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++ DD+
Sbjct: 571 TVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEDGDDI 630
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGLTAKVFRTYNAS T+ +L + + VA K+ +Y N+
Sbjct: 631 FDRLTTTQLNKHLSSYMPGLTAKVFRTYNASYTMSKLLQELKVTNATVAEKVKLYNDCNR 690
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
+VAI+CNH+RTV +H QM +L E+I+ L+
Sbjct: 691 QVAILCNHKRTVGASHEQQMKKLVEQIKGLR 721
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE + + + +I+ +E +E K VALGTSKINY+DPR+TV + + VPIEK F
Sbjct: 830 EKLEAALVKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIEKFF 889
Query: 927 NKSLLAKFAWAMD 939
+K+L KF WA++
Sbjct: 890 SKTLREKFKWAIE 902
>gi|449683056|ref|XP_002162187.2| PREDICTED: DNA topoisomerase 1-like, partial [Hydra magnipapillata]
Length = 476
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/417 (51%), Positives = 286/417 (68%), Gaps = 11/417 (2%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHV 475
+P VK Y GK + L+ E EEVAT +A MLD DY++K F ENF+ DWRK + + ++
Sbjct: 1 MPKNVKFYYDGKPMQLSLEAEEVATFYAKMLDHDYVKKDIFNENFFEDWRKEMTAEERNI 60
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I++L+ CDFK ++ + + E+K+ M+ EEK+A+KE K EKY + +DG K+KVGNF
Sbjct: 61 IKSLDKCDFKEMHAYFMKCAEEKRNMTKEEKQAIKEANLKIAEKYGFCEMDGHKQKVGNF 120
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
R+EPPGLFRGRG+HPK GKLKKR+ ++ INIGK+ +P+ P G+ WK V+HDNTV+W
Sbjct: 121 RIEPPGLFRGRGDHPKQGKLKKRVSAKEVIINIGKEAKVPQ-PPEGQKWKAVQHDNTVSW 179
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I +KYV L A++ LKG+ D +KYE ARKLK+ + +IR Y D+ S++
Sbjct: 180 LACWVENI-AGGYKYVMLNAATRLKGEKDWQKYETARKLKECVETIRENYINDWKSKEMK 238
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIP-----PNKLKFDFLG 709
RQ VA Y IDKLALRAG+EK++ E ADTVGCC+L+V ++ P N ++FDFLG
Sbjct: 239 IRQRGVAMYFIDKLALRAGHEKEEGESADTVGCCSLRVEHITLHPEKDGQENVVEFDFLG 298
Query: 710 KDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRT 769
KDSI+Y N+V VE V+K + F GK+ DDLFD+L T LN L ELMPGL+AKVFRT
Sbjct: 299 KDSIRYTNSVPVEKRVFKNLQLFMQGKQAGDDLFDRLSTTSLNKFLGELMPGLSAKVFRT 358
Query: 770 YNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
YNASITL LN+ T +G V K Y RAN+ VAI+CNHQR KT QM +
Sbjct: 359 YNASITLQQQLNELTEEGASVTAKFLQYNRANRAVAILCNHQRAAPKTFDKQMENIV 415
>gi|300121797|emb|CBK22371.2| unnamed protein product [Blastocystis hominis]
Length = 575
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/586 (40%), Positives = 345/586 (58%), Gaps = 61/586 (10%)
Query: 411 VIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFA-VMLDTDYMQKPK----FRENFWND 465
++F P Y PHGV + Y GK V LTPEQEE+AT++A V D ++ PK F NF++
Sbjct: 1 MVFQPLYAPHGVPLYYDGKPVALTPEQEEIATLYAQVGDDAIQLRDPKTAAVFNANFFSF 60
Query: 466 WRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIV 525
+R+ LG + ++ ++ CDF I + Q++++ + S+EEK+ +Q+ + + +V
Sbjct: 61 FREALGADSPVRTMDKCDFSAIRAHLEAQRKQRVKTSAEEKQ-------QQQLRMGYMLV 113
Query: 526 DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWK 585
DG +KVGN+ +EPP LFRGRG HP+MG +K R+ P + +N+ ++ +P CP+PG +++
Sbjct: 114 DGNCQKVGNYVIEPPSLFRGRGMHPRMGSVKMRVIPEQVLLNVDLNMAVPACPMPGHNYE 173
Query: 586 EVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAY 645
+ WLA W D N KY + AS LKGQ+D EKYE AR+LK +I IR+
Sbjct: 174 SIVCKKDTLWLAKWED--NLGHGKYCGVNASCYLKGQNDMEKYEIARRLKRFIRKIRSTV 231
Query: 646 TKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKF 705
+D S D +Q+A A ++IDKLALR GNEK +DEADTVGCC+L+V ++ L
Sbjct: 232 LRDLKSDDKKEKQLATAIWIIDKLALRVGNEKSEDEADTVGCCSLRVEHLSFADDCTLTL 291
Query: 706 DFLGKDSIQYVNTVEVELP-----VYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMP 760
DFL KDS+ Y T++++ V+K + F K DD+FD L T+ LNA L + MP
Sbjct: 292 DFLAKDSMPYHQTIQLDQYEGGKLVFKNLKSFCKAKSPKDDVFDLLSTSSLNARLTQFMP 351
Query: 761 GLTAKVFRTYNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKT--- 816
GLTAKVFRTYNAS+TL+ L+ G V + Y AN+EVAI+CNHQR++ K
Sbjct: 352 GLTAKVFRTYNASVTLEEQLHSTYPAGTSVEEMVLQYNDANREVAILCNHQRSLPKNWDQ 411
Query: 817 ----HSAQMSRLTEKIEDLKGVLKDLR----VDL------DRAKKGKPPLMKDSDGKRKR 862
Q+ L + ++L+ +L+D+R V+L KK + P +D+ + ++
Sbjct: 412 TNAKKRGQIELLQRQTDELRQMLRDVRAQKPVELLPEAYWAPVKKEEVP--EDASEEERK 469
Query: 863 NLAPEALER-----------KMAQTNAKIEKM-----------ERDMKTKEDLKTVALGT 900
+ + ER K T A++EK E ++ E K VALGT
Sbjct: 470 QIKEKHDERVAERAQYLHLFKSQPTEAQVEKRLEAYSKRLADGELKLRDMESNKLVALGT 529
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKINY+DPRITVAWCKR+EVPIEKIF K+L + WAM V +RF
Sbjct: 530 SKINYMDPRITVAWCKRNEVPIEKIFAKTLRTRHNWAMCVPESYRF 575
>gi|406866162|gb|EKD19202.1| eukaryotic DNA topoisomerase I [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 897
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/643 (40%), Positives = 365/643 (56%), Gaps = 96/643 (14%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDY-MQ 454
D KW TL HNGVIFPPPY LP VK+LY G V L+ E EE+A F ML++ ++
Sbjct: 257 DDSIKWETLQHNGVIFPPPYEPLPKNVKLLYDGVPVTLSVEAEEIAGFFGAMLNSTLNVE 316
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
P F++NF+ D+ + G+ I+ DFK I+ ++ + + +K S+
Sbjct: 317 NPTFQKNFFQDFTDEVKKTGGAKGPNGEKINIKEFSKLDFKQIFAYYDGKSQARKARSAA 376
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EKKA K EK++ E Y + DG KE+VGNFRVEPPGLFRGRG HPK GK+K+R+ P+ +
Sbjct: 377 EKKAEKAEKDEVEAPYTHCLWDGRKEQVGNFRVEPPGLFRGRGAHPKTGKVKRRVYPNQV 436
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
INIGK+ +P P G +WKEV+HDN V+WL W + IN KYV LAA SS+KGQSD
Sbjct: 437 IINIGKEATVPPPP-EGYNWKEVRHDNKVSWLVMWQENINGAH-KYVQLAAKSSVKGQSD 494
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK +I IR YT+D + RQ A A YLID+LALRAGNEKD ++EA+
Sbjct: 495 FKKFEKARELKKHIDHIRKEYTRDLGAELMADRQRATAVYLIDRLALRAGNEKDAENEAE 554
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDL 742
TVGCC+LK ++ PPN + FDFLGKDSI+Y + V VE V+K + F+ KQ DD+
Sbjct: 555 TVGCCSLKYEHITLKPPNIVIFDFLGKDSIRYYDEVAVEDKVFKNLKLFKKPPKQEGDDI 614
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGL+AKVFRTYNAS T+ L + + K+ +Y N+
Sbjct: 615 FDRLTTTQLNKHLTSYMPGLSAKVFRTYNASWTMSKTLQALKVKNLSIQEKVKLYNDCNR 674
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLMKD 855
EVA++CNH+R+V +H AQM ++T++I+ L + LK + +D+D + KKG
Sbjct: 675 EVAVLCNHKRSVGASHQAQMEKMTDRIKGLQYQQWRLKQMILDVDPKQKKKKGAEWFKLH 734
Query: 856 SDGKRKRNLAPEA---------LERKMAQTNAK-IEKMERDMKTKE---------DLK-- 894
D + + +A +E+K + N K + + ++MK KE DL+
Sbjct: 735 EDLDQDWIIEHQAFLVQEQRTKIEKKFEKDNEKLVAEGGKEMKAKELKERLGVADDLEKK 794
Query: 895 -----------------TVALGTSKINYLDPRIT-------------------------- 911
+V + I LD RIT
Sbjct: 795 FKKENKTKKVEPEGKGPSVEKYEAAIKKLDDRITTMRLQAEDREGNKEVALGTSKINYID 854
Query: 912 ----VAWCKRHEVPIEKIFNKSLLAKFAWAM----DVDPEFRF 946
V + K+ +VPIEK F+K+L KF WA+ D D ++ F
Sbjct: 855 PRLTVIFAKKFDVPIEKFFSKTLREKFNWAIESMKDEDDDWEF 897
>gi|402081270|gb|EJT76415.1| DNA topoisomerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 929
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/454 (49%), Positives = 291/454 (64%), Gaps = 21/454 (4%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P D KWT L HNGV+FPP Y LP VK++Y + L E EEVAT + ML+++
Sbjct: 283 PKKEDDSIKWTNLEHNGVMFPPSYEPLPKNVKLIYDSVPLELHVEAEEVATFYGSMLNSE 342
Query: 452 YMQK-PKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
K P F +NF++ ++ L G I+ E DF+PI+ +Q + KK
Sbjct: 343 VNTKNPTFNKNFFSGFKDKLKQTGGAKDKKGNKVDIKEFEKLDFQPIFAHYQAMSDVKKA 402
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
S EEKK KEE++K EE + + DG KEKVGNFRVEPPGLFRGRGEHPK G +K+R+
Sbjct: 403 RSKEEKKLDKEERDKLEEPFKFCKWDGRKEKVGNFRVEPPGLFRGRGEHPKTGTVKERVM 462
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P +TINIGK +P P PG WK V+HDN TWLA W + +N +KYV LAA+S++K
Sbjct: 463 PEQVTINIGKGAKVPPAP-PGHKWKAVQHDNKATWLAMWQENVN-GNYKYVMLAANSAVK 520
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-D 679
GQ+D +K+EKAR+LK +I IR YTKD S RQ A A Y IDKLALRAGNEKD +
Sbjct: 521 GQADFKKFEKARELKKHIDKIRRDYTKDLRSEVMADRQRATAMYFIDKLALRAGNEKDTE 580
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQ 738
+EA+TVGCC+LK NV +PPN + DFLGKDSI++ VEVE V+K + F+ K++
Sbjct: 581 NEAETVGCCSLKFENVTLVPPNTVYLDFLGKDSIRFEQEVEVEPQVFKNLKMFKKPPKEE 640
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV----AVKID 794
DD+FD+L T++LN HL M GLTAKVFRTYNAS T+ +L + G A K+
Sbjct: 641 GDDIFDRLTTSQLNKHLSSYMTGLTAKVFRTYNASYTMSTLLQELDGPKIAKMTDAEKLK 700
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKI 828
Y N+ VAI+CNH+R+ H AQM +L ++I
Sbjct: 701 AYNDCNRRVAILCNHKRSAPAAHGAQMEKLGDRI 734
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
R + E LE + + +I +E ++ K VALGTSKINY+DPR+TV +C + +V
Sbjct: 842 RGVTVEKLEGNIEKIEERIRNLEIQAADRDGNKEVALGTSKINYIDPRLTVVFCNKAKVG 901
Query: 922 IEKIFNKSLLAKFAWAMDV---DPEFRF 946
IEK F+K+L KF WA+ D E+ F
Sbjct: 902 IEKFFSKTLRDKFNWAIQSVGDDAEWEF 929
>gi|256076901|ref|XP_002574747.1| DNA topoisomerase type I [Schistosoma mansoni]
gi|360044089|emb|CCD81636.1| putative dna topoisomerase type I [Schistosoma mansoni]
Length = 587
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/438 (49%), Positives = 283/438 (64%), Gaps = 12/438 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP V Y K + L+ EEVA +A MLD DY K F
Sbjct: 137 KWKFLEHKGPLFAPPYERLPSSVHFHYDSKPIKLSDHAEEVAGFYARMLDHDYTTKEVFN 196
Query: 460 ENFWNDWRKLLGK--NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DW K + + I++L CDF+ ++ + + E++K + EEK+ +KEE + +
Sbjct: 197 YNFFRDWVKTMNEEERRTIKSLSKCDFREMHQYFLKLSEERKNRTKEEKQKIKEENLQIQ 256
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+Y + I+DG K+++GNFR+EPPGLFRGRG HPKMG LKKRI P D+ IN KD +P
Sbjct: 257 NEYGYCILDGHKQRIGNFRIEPPGLFRGRGNHPKMGMLKKRIMPEDVIINCSKDSKVP-A 315
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN+VTWLA W + I FKY+ L SS LKG+ D +KYE AR L
Sbjct: 316 PPKGHKWKEVRHDNSVTWLACWTENIQ-NSFKYIMLNPSSRLKGEKDWKKYETARCLHKV 374
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y DF ++ RQ AVA Y IDKLALRAGNEKD+DEADTVGCC+L+ +++
Sbjct: 375 IDKIRADYRADFKHKEMRIRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRYEHIKL 434
Query: 698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
P ++FDFLGKDSI+Y N V V V+K + F KK+NDDLFD+L+T LN
Sbjct: 435 HEELNGQPYVVEFDFLGKDSIRYQNAVSVPKRVFKNVKLFLKNKKENDDLFDRLNTTVLN 494
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
+L+ELM GLTAKVFRTYNAS TL+ L + T D K+ Y RAN+ VA++CNHQR
Sbjct: 495 QYLRELMDGLTAKVFRTYNASRTLEEQLERLTNPDDPPHAKLLAYNRANRAVAVLCNHQR 554
Query: 812 TVSKTHSAQMSRLTEKIE 829
+V K+ + M L +K++
Sbjct: 555 SVPKSFAKSMENLQKKVQ 572
>gi|256076897|ref|XP_002574745.1| DNA topoisomerase type I [Schistosoma mansoni]
gi|360044087|emb|CCD81634.1| putative dna topoisomerase type I [Schistosoma mansoni]
Length = 571
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/437 (49%), Positives = 282/437 (64%), Gaps = 12/437 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP V Y K + L+ EEVA +A MLD DY K F
Sbjct: 137 KWKFLEHKGPLFAPPYERLPSSVHFHYDSKPIKLSDHAEEVAGFYARMLDHDYTTKEVFN 196
Query: 460 ENFWNDWRKLLGK--NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DW K + + I++L CDF+ ++ + + E++K + EEK+ +KEE + +
Sbjct: 197 YNFFRDWVKTMNEEERRTIKSLSKCDFREMHQYFLKLSEERKNRTKEEKQKIKEENLQIQ 256
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+Y + I+DG K+++GNFR+EPPGLFRGRG HPKMG LKKRI P D+ IN KD +P
Sbjct: 257 NEYGYCILDGHKQRIGNFRIEPPGLFRGRGNHPKMGMLKKRIMPEDVIINCSKDSKVP-A 315
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN+VTWLA W + I FKY+ L SS LKG+ D +KYE AR L
Sbjct: 316 PPKGHKWKEVRHDNSVTWLACWTENIQ-NSFKYIMLNPSSRLKGEKDWKKYETARCLHKV 374
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y DF ++ RQ AVA Y IDKLALRAGNEKD+DEADTVGCC+L+ +++
Sbjct: 375 IDKIRADYRADFKHKEMRIRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRYEHIKL 434
Query: 698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
P ++FDFLGKDSI+Y N V V V+K + F KK+NDDLFD+L+T LN
Sbjct: 435 HEELNGQPYVVEFDFLGKDSIRYQNAVSVPKRVFKNVKLFLKNKKENDDLFDRLNTTVLN 494
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
+L+ELM GLTAKVFRTYNAS TL+ L + T D K+ Y RAN+ VA++CNHQR
Sbjct: 495 QYLRELMDGLTAKVFRTYNASRTLEEQLERLTNPDDPPHAKLLAYNRANRAVAVLCNHQR 554
Query: 812 TVSKTHSAQMSRLTEKI 828
+V K+ + M L +K+
Sbjct: 555 SVPKSFAKSMENLQKKV 571
>gi|198414178|ref|XP_002124723.1| PREDICTED: similar to DNA topoisomerase I, partial [Ciona
intestinalis]
Length = 482
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 236/483 (48%), Positives = 310/483 (64%), Gaps = 22/483 (4%)
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+F+ + + Q++ E++K S EEK+ K++ E++ + DG +EK+GNF
Sbjct: 10 ITDLGKCNFRDVCSYFQQKSEERKARSKEEKQEEKKKNEALIEEFGFCDWDGHREKIGNF 69
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
R+EPPGLFRGRG HPKMGKLKKRI P +ITIN K+ IP+ P G WKEV+HDN VTW
Sbjct: 70 RLEPPGLFRGRGNHPKMGKLKKRIIPENITINCSKNSKIPK-PPAGHKWKEVRHDNAVTW 128
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
L W + + + KY+ L SS +KG+ D +KYE AR LK + IR Y +D S +
Sbjct: 129 LVSWTENVQNQN-KYIMLNPSSRVKGEKDWQKYEVARNLKSKVDRIREDYMRDLKSDEMM 187
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIPPNK--------LKFD 706
RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+ E I +K ++FD
Sbjct: 188 VRQRAVALYFIDKLALRAGNEKEDGESADTVGCCSLR---CEHIKLHKHLDGKDFIVEFD 244
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
FLGKDSI+Y N V V V+K + F K+ DDLFD+L+T+ LN +L LM GLTAKV
Sbjct: 245 FLGKDSIRYYNKVPVLKQVFKNLVLFTENKEGPDDLFDRLNTSTLNKYLNSLMDGLTAKV 304
Query: 767 FRTYNASITLDGMLNKGT--GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRL 824
FRTYNASITL L + T D +VA KI Y RAN+ VA++CNHQR K S QM R+
Sbjct: 305 FRTYNASITLLNQLLELTDPDDENVASKILSYNRANRAVAVLCNHQRAAPKNFSEQMGRM 364
Query: 825 TEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKME 884
EKIE + ++D + + AK S+ KRK A E ++K+ + ++ K+E
Sbjct: 365 NEKIEKKQRDIQDAKQETKSAKSDYKH--NKSEAKRK---AYEGKKKKVERLQEQLIKLE 419
Query: 885 RDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPE 943
KE+ K +ALGTSK+NYLDPRITVAWCK++ VPIEK +NK+ KFAWA+ VD
Sbjct: 420 VQATDKEENKEIALGTSKLNYLDPRITVAWCKKYSVPIEKCYNKTQRDKFAWAIAMVDDT 479
Query: 944 FRF 946
+ F
Sbjct: 480 YVF 482
>gi|401410206|ref|XP_003884551.1| hypothetical protein NCLIV_049500 [Neospora caninum Liverpool]
gi|325118969|emb|CBZ54521.1| hypothetical protein NCLIV_049500 [Neospora caninum Liverpool]
Length = 898
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/406 (51%), Positives = 275/406 (67%), Gaps = 24/406 (5%)
Query: 400 QKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
+K+WT L HNG++F PPY PHG ++ Y G+ V+L PE EEVA + +L++DY KP+F
Sbjct: 248 EKQWTYLEHNGLMFAPPYEPHGTQIKYNGQPVSLPPEAEEVANYWCGVLESDYATKPRFI 307
Query: 460 ENFWNDWRKLLGKNHVIQNLEG---------------------CDFKPIYDWHQEQKEKK 498
ENFW + + L K+H I EG CDF PI ++ +QKE K
Sbjct: 308 ENFWKAFLRNLPKDHPILRDEGHAEAKLATEYKSGERLAGFAACDFSPIKEYLDKQKELK 367
Query: 499 KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 558
K+M+ EEK+ +K++K ++ Y +A+VD ++EKVGN RVEPPGLFRGRGEHPK G LK+R
Sbjct: 368 KEMTKEEKEVVKQQKLQEAAPYAYALVDFIREKVGNTRVEPPGLFRGRGEHPKQGMLKRR 427
Query: 559 IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618
I D+ +N+ +D P+P +PG +WK+V HDN+VTWLAF+ D IN + KY++LAA S
Sbjct: 428 IFSYDVILNLAEDAPVPRVALPGHAWKDVFHDNSVTWLAFYRDSIN-DQVKYMYLAAQSK 486
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
KGQ D KYEKARKLK ++ IR Y K S + RQ+ ATYLID LALR G EKD
Sbjct: 487 FKGQQDFLKYEKARKLKLHVDRIRQDYFKKLESTNSLDRQLGTATYLIDVLALRVGGEKD 546
Query: 679 -DDEADTVGCCTLKVGNVEC-IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736
D+EADTVGCC+L+V ++ ++ FDFLGKDSI+Y NTV+V V+K I F GK
Sbjct: 547 TDEEADTVGCCSLRVEHLTFDTEKQEVTFDFLGKDSIRYFNTVKVHPQVFKNIVGFCKGK 606
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
K DD+FDK+++A LN HL++ MPGL+AKVFRTYNASITL L K
Sbjct: 607 KLEDDVFDKINSAALNNHLRQFMPGLSAKVFRTYNASITLQNELRK 652
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 98/175 (56%), Gaps = 18/175 (10%)
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 847
+V + Y AN+ VAI+CNHQR+V K H+A M ++ + L +++ L KK
Sbjct: 726 NVGELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLAYLKK 785
Query: 848 GKPPL-----------MKDSDGK-RKRNLAPEALERKMAQTNAKIEKMERD----MKTKE 891
PP +KD G RK N+ E A+ + K D +K K+
Sbjct: 786 --PPSKRKEHFTYISDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKLKD 843
Query: 892 DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
D KTVALGTSKINY+DPRITVA+CK++EVPIEK+FNKSL KF WAM F F
Sbjct: 844 DNKTVALGTSKINYMDPRITVAFCKKYEVPIEKLFNKSLRLKFPWAMFAKSTFEF 898
>gi|147853091|emb|CAN81282.1| hypothetical protein VITISV_037391 [Vitis vinifera]
Length = 1449
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 224/273 (82%), Gaps = 28/273 (10%)
Query: 677 KDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736
KDDDEADTVGCCTLKV NV PPN L+FDFLGKDSI+Y TVEVELPVYKAI QF+ GK
Sbjct: 1202 KDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGK 1261
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVY 796
+DDLFDKLDT+KLNAHLKELMPGLTAKVFRTYNASITLD M
Sbjct: 1262 SGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEM----------------- 1304
Query: 797 QRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS 856
VAIICNHQRT+SK+H+AQM+RLTEKI+++KGVL L+ DL RAKKGKPPL KD+
Sbjct: 1305 ------VAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKPPL-KDA 1357
Query: 857 DGKRKRNLAPEA---LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
DGKR RNL PEA LERK+AQTNAKIEKMERD TKEDLKTVALGTSKINYLDPRI+VA
Sbjct: 1358 DGKR-RNLTPEATYRLERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPRISVA 1416
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKR EVPIEK+FNKSLLAKFAWAMDV P+FRF
Sbjct: 1417 WCKRQEVPIEKVFNKSLLAKFAWAMDVPPDFRF 1449
>gi|221507958|gb|EEE33545.1| DNA topoisomerase I, putative [Toxoplasma gondii VEG]
Length = 953
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/406 (51%), Positives = 275/406 (67%), Gaps = 24/406 (5%)
Query: 400 QKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
+K+W+ L HNG++F PPY PHG ++ Y GK V+L PE EEVA + +L++DY KP+F
Sbjct: 305 EKQWSYLEHNGLMFAPPYEPHGKQLTYHGKPVSLPPEAEEVANYWCGVLESDYATKPRFV 364
Query: 460 ENFWNDWRKLLGKNHVIQNLEG---------------------CDFKPIYDWHQEQKEKK 498
ENFW + + L K+H I EG CDF PI ++ +QKE K
Sbjct: 365 ENFWKAFLRNLPKDHPILVEEGFAEAKLATEYKEGERMVGFAACDFSPIKEYLDKQKELK 424
Query: 499 KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 558
K+MS EEK+ LK++K ++ Y +A+VD ++EKVGN RVEPPGLFRGRGEHPK G LK+R
Sbjct: 425 KEMSKEEKEILKQQKLQEGAPYAYALVDFIREKVGNTRVEPPGLFRGRGEHPKQGMLKRR 484
Query: 559 IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618
I D+ +N+ +D P+P +PG +WK+V HDN+VTWLAF+ D IN + KY++LAA S
Sbjct: 485 IFSYDVILNLAEDAPVPRVALPGHAWKDVFHDNSVTWLAFYRDSIN-DQVKYMYLAAQSK 543
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
KGQ D KYEKARKLK ++ IR Y K S + RQ+ ATYLID LALR G EKD
Sbjct: 544 FKGQQDFLKYEKARKLKLHVDRIRQDYFKKLESTNSLDRQLGTATYLIDVLALRVGGEKD 603
Query: 679 -DDEADTVGCCTLKVGNVEC-IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736
D+EADTVGCC+L+V ++ ++ FDFLGKDSI+Y NTV+V V+K + F GK
Sbjct: 604 TDEEADTVGCCSLRVEHLTFDTEKQEVTFDFLGKDSIRYFNTVKVHPQVFKNVVGFCKGK 663
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
K DD+FDK+++A LN HL++ MPGL+AKVFRTYNASITL L K
Sbjct: 664 KPEDDVFDKINSAALNNHLRQFMPGLSAKVFRTYNASITLQNELFK 709
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 99/175 (56%), Gaps = 18/175 (10%)
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 847
+V + Y AN+ VAI+CNHQR+V K H+A M ++ + L +++ L+ KK
Sbjct: 781 NVGELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLEFLKK 840
Query: 848 GKPPL-----------MKDSDGK-RKRNLAPEALERKMAQTNAKIEKMERD----MKTKE 891
PP +KD G RK N+ E A+ + K D +K K+
Sbjct: 841 --PPSKRKERFTFVSDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKLKD 898
Query: 892 DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
D KTVALGTSKINY+DPRITVA+CK++EVPIEK+FNKSL KF WAM F F
Sbjct: 899 DNKTVALGTSKINYMDPRITVAFCKKYEVPIEKLFNKSLRLKFPWAMFAKSTFEF 953
>gi|221483488|gb|EEE21807.1| DNA topoisomerase I, putative [Toxoplasma gondii GT1]
Length = 953
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/406 (51%), Positives = 275/406 (67%), Gaps = 24/406 (5%)
Query: 400 QKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
+K+W+ L HNG++F PPY PHG ++ Y GK V+L PE EEVA + +L++DY KP+F
Sbjct: 305 EKQWSYLEHNGLMFAPPYEPHGKQITYHGKPVSLPPEAEEVANYWCGVLESDYATKPRFV 364
Query: 460 ENFWNDWRKLLGKNHVIQNLEG---------------------CDFKPIYDWHQEQKEKK 498
ENFW + + L K+H I EG CDF PI ++ +QKE K
Sbjct: 365 ENFWKAFLRNLPKDHPILVEEGFAEAKLATEYKEGERMVGFAACDFSPIKEYLDKQKELK 424
Query: 499 KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 558
K+MS EEK+ LK++K ++ Y +A+VD ++EKVGN RVEPPGLFRGRGEHPK G LK+R
Sbjct: 425 KEMSKEEKEILKQQKLQEGAPYAYALVDFIREKVGNTRVEPPGLFRGRGEHPKQGMLKRR 484
Query: 559 IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618
I D+ +N+ +D P+P +PG +WK+V HDN+VTWLAF+ D IN + KY++LAA S
Sbjct: 485 IFSYDVILNLAEDAPVPRVALPGHAWKDVFHDNSVTWLAFYRDSIN-DQVKYMYLAAQSK 543
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
KGQ D KYEKARKLK ++ IR Y K S + RQ+ ATYLID LALR G EKD
Sbjct: 544 FKGQQDFLKYEKARKLKLHVDRIRQDYFKKLESTNSLDRQLGTATYLIDVLALRVGGEKD 603
Query: 679 -DDEADTVGCCTLKVGNVEC-IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736
D+EADTVGCC+L+V ++ ++ FDFLGKDSI+Y NTV+V V+K + F GK
Sbjct: 604 TDEEADTVGCCSLRVEHLTFDTEKQEVTFDFLGKDSIRYFNTVKVHPQVFKNVVGFCKGK 663
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
K DD+FDK+++A LN HL++ MPGL+AKVFRTYNASITL L K
Sbjct: 664 KPEDDVFDKINSAALNNHLRQFMPGLSAKVFRTYNASITLQNELFK 709
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 99/175 (56%), Gaps = 18/175 (10%)
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 847
+V + Y AN+ VAI+CNHQR+V K H+A M ++ + L +++ L+ KK
Sbjct: 781 NVGELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLEFLKK 840
Query: 848 GKPPL-----------MKDSDGK-RKRNLAPEALERKMAQTNAKIEKMERD----MKTKE 891
PP +KD G RK N+ E A+ + K D +K K+
Sbjct: 841 --PPSKRKERFTFVSDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKLKD 898
Query: 892 DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
D KTVALGTSKINY+DPRITVA+CK++EVPIEK+FNKSL KF WAM F F
Sbjct: 899 DNKTVALGTSKINYMDPRITVAFCKKYEVPIEKLFNKSLRLKFPWAMFAKSTFEF 953
>gi|237839157|ref|XP_002368876.1| DNA topoisomerase I, putative [Toxoplasma gondii ME49]
gi|211966540|gb|EEB01736.1| DNA topoisomerase I, putative [Toxoplasma gondii ME49]
Length = 953
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/406 (51%), Positives = 275/406 (67%), Gaps = 24/406 (5%)
Query: 400 QKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
+K+W+ L HNG++F PPY PHG ++ Y GK V+L PE EEVA + +L++DY KP+F
Sbjct: 305 EKQWSYLEHNGLMFAPPYEPHGKQITYHGKPVSLPPEAEEVANYWCGVLESDYATKPRFV 364
Query: 460 ENFWNDWRKLLGKNHVIQNLEG---------------------CDFKPIYDWHQEQKEKK 498
ENFW + + L K+H I EG CDF PI ++ +QKE K
Sbjct: 365 ENFWKAFLRNLPKDHPILVEEGFAEAKLATEYKEGERMVGFAACDFSPIKEYLDKQKELK 424
Query: 499 KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 558
K+MS EEK+ LK++K ++ Y +A+VD ++EKVGN RVEPPGLFRGRGEHPK G LK+R
Sbjct: 425 KEMSKEEKEILKQQKLQEGAPYAYALVDFIREKVGNTRVEPPGLFRGRGEHPKQGMLKRR 484
Query: 559 IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618
I D+ +N+ +D P+P +PG +WK+V HDN+VTWLAF+ D IN + KY++LAA S
Sbjct: 485 IFSYDVILNLAEDAPVPRVALPGHAWKDVFHDNSVTWLAFYRDSIN-DQVKYMYLAAQSK 543
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
KGQ D KYEKARKLK ++ IR Y K S + RQ+ ATYLID LALR G EKD
Sbjct: 544 FKGQQDFLKYEKARKLKLHVDRIRQDYFKKLESTNSLDRQLGTATYLIDVLALRVGGEKD 603
Query: 679 -DDEADTVGCCTLKVGNVEC-IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736
D+EADTVGCC+L+V ++ ++ FDFLGKDSI+Y NTV+V V+K + F GK
Sbjct: 604 TDEEADTVGCCSLRVEHLTFDTEKQEVTFDFLGKDSIRYFNTVKVHPQVFKNVVGFCKGK 663
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
K DD+FDK+++A LN HL++ MPGL+AKVFRTYNASITL L K
Sbjct: 664 KPEDDVFDKINSAALNNHLRQFMPGLSAKVFRTYNASITLQNELFK 709
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 99/175 (56%), Gaps = 18/175 (10%)
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 847
+V + Y AN+ VAI+CNHQR+V K H+A M ++ + L +++ L+ KK
Sbjct: 781 NVGELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLEFLKK 840
Query: 848 GKPPL-----------MKDSDGK-RKRNLAPEALERKMAQTNAKIEKMERD----MKTKE 891
PP +KD G RK N+ E A+ + K D +K K+
Sbjct: 841 --PPSKRKERFTFVSDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKLKD 898
Query: 892 DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
D KTVALGTSKINY+DPRITVA+CK++EVPIEK+FNKSL KF WAM F F
Sbjct: 899 DNKTVALGTSKINYMDPRITVAFCKKYEVPIEKLFNKSLRLKFPWAMFAKSTFEF 953
>gi|115898767|ref|XP_801858.2| PREDICTED: DNA topoisomerase 1-like isoform 3, partial
[Strongylocentrotus purpuratus]
Length = 440
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/443 (50%), Positives = 283/443 (63%), Gaps = 23/443 (5%)
Query: 511 EEKNKQEE---KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITIN 567
E K K EE +Y + DG KEK+GNFRVEPP LFRGRGEHPK G+LKKRI P D+ IN
Sbjct: 1 ENKRKNEEIQKEYGFCSFDGHKEKIGNFRVEPPSLFRGRGEHPKQGQLKKRIGPEDVIIN 60
Query: 568 IGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREK 627
KD P P G WK+V H+N+VTWLA W + I KYV L SS +KG+ D K
Sbjct: 61 CSKDSKWP-IPPEGHKWKKVIHENSVTWLASWTENIQGA-IKYVMLNPSSRIKGEKDWAK 118
Query: 628 YEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVG 686
YE ARKLK+ + IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVG
Sbjct: 119 YETARKLKESVDRIRNEYREDWKSKEMRVRQRAVALYFIDKLALRAGNEKEEGETADTVG 178
Query: 687 CCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDD 741
CC+L+V +++ +KFDFLGKDSI+Y N+V VE V+K + F KK D+
Sbjct: 179 CCSLRVEHIQLYEEQDGMEFVVKFDFLGKDSIRYENSVPVEKRVFKNLKLFTENKKGEDN 238
Query: 742 LFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRAN 800
LFD+L+T+ LN +L+ELM GLTAKVFRTYNAS TL L + T D V K+ Y RAN
Sbjct: 239 LFDRLNTSILNKYLQELMEGLTAKVFRTYNASSTLQNQLVELTDADDSVTAKMLSYNRAN 298
Query: 801 KEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
+ VA++CNHQR KT QM L EKI+ +D+ AKKG + + R
Sbjct: 299 RAVAVLCNHQRAAPKTFDKQMENLQEKID-------KKHLDIKEAKKGLKAIKSEYKNSR 351
Query: 861 KRNLAPEALERKMAQTNAKIE---KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
L A+E+K Q +E K+E KE+ K +ALGTSK+NYLDPRI+VAW K+
Sbjct: 352 NEKLKL-AMEKKAKQVERLVEQLAKLEMKATDKEENKEIALGTSKLNYLDPRISVAWTKK 410
Query: 918 HEVPIEKIFNKSLLAKFAWAMDV 940
+VPIEK++NK+ KF WA+D+
Sbjct: 411 WDVPIEKVYNKTQRDKFRWAVDM 433
>gi|119602670|gb|EAW82264.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_e [Homo sapiens]
Length = 540
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 227/551 (41%), Positives = 308/551 (55%), Gaps = 68/551 (12%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPEP 231
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 232 P-AGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ IR+ Y D+ SR+ RQ AVA Y IDK+ + N++
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKVVYK---------------------NLQL 328
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
NK D L FD+L T LN HL+E
Sbjct: 329 FMENKDPRDDL----------------------------------FDRLTTTSLNKHLQE 354
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKT 816
LM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQR T
Sbjct: 355 LMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPST 414
Query: 817 HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
M L KI+ K +V RA+ + + G K E R + +
Sbjct: 415 FEKSMQNLQTKIQ-----AKKEQVAEARAELRRARAEHKAQGDGKSRSVLEKKRRLLEKL 469
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+ +FAW
Sbjct: 470 QEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKTQRERFAW 529
Query: 937 AMDVDPE-FRF 946
A+ + E F F
Sbjct: 530 ALAMAGEDFEF 540
>gi|342180523|emb|CCC89999.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 375
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/336 (57%), Positives = 241/336 (71%), Gaps = 4/336 (1%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+K+W TL HNGV+FPPPY PHG+ +LY+G++ +TPE+EEVATMFAV+ + DY + F
Sbjct: 39 GEKRWDTLCHNGVMFPPPYAPHGIPILYEGRKFVMTPEEEEVATMFAVLREHDYYRNQIF 98
Query: 459 RENFWNDWRKLLGKN-HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
RENF+ WRK+L + H I++LE CDF PIY+WH ++EKK + EEKK LK +K+
Sbjct: 99 RENFFLSWRKILDRRPHPIRSLELCDFTPIYEWHLREREKKLSRTREEKKELKLIADKEA 158
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
E Y W I DG +E+V NFRVEPPGLFRGRG HPKMG LKKR+ P DI INIG++ PIP
Sbjct: 159 EPYKWCIWDGRREQVANFRVEPPGLFRGRGCHPKMGTLKKRLVPEDIVINIGEESPIP-T 217
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G W V H++ VTWLA W + ++ KYV LA SS++KGQSD K+EKAR+LKD+
Sbjct: 218 PPAGHRWGAVIHNHNVTWLAMWKENVSNLN-KYVMLAPSSAVKGQSDLMKFEKARELKDH 276
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK-DDDEADTVGCCTLKVGNVE 696
I IR +Y KDF S D Q AVATY IDKLALR GNEK +DEADTVGCC+L+ ++E
Sbjct: 277 IDEIRKSYHKDFKSGDLRTAQRAVATYFIDKLALRVGNEKCQEDEADTVGCCSLRKEHIE 336
Query: 697 CIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQF 732
P N +KFDFLGKDSI+Y N V VY + +F
Sbjct: 337 LKPNNVVKFDFLGKDSIRYENEAVVLPEVYALLQKF 372
>gi|297683812|ref|XP_002819562.1| PREDICTED: DNA topoisomerase I, mitochondrial, partial [Pongo
abelii]
Length = 629
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/394 (50%), Positives = 258/394 (65%), Gaps = 13/394 (3%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLY---KGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
KW L H G F PPY P M GK V L+ EEVAT + MLD +Y K F
Sbjct: 52 KWRQLEHKGPYFAPPYEPLSHAMCLWMPAGKPVRLSVVAEEVATFYGRMLDHEYTTKEVF 111
Query: 459 RENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
++NF+NDWRK + + VI++L+ CDF I+ + ++ +K ++ EEK+ LKEE K
Sbjct: 112 QKNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTREEKQKLKEEAEKL 171
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QQEFGYCILDGHREKIGNFKIEPPGLFRGRGDHPKMGMLKRRIMPEDVVINCSRDSKIPE 231
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
P G WKEV+ DNTVTWLA W + + KY+ L S LKG+ +K+E AR+L+
Sbjct: 232 -PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGEKAWQKFETARRLRG 289
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNV 695
++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V
Sbjct: 290 FVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEVADTVGCCSLRVEHV 349
Query: 696 ECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAK 750
+ P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T
Sbjct: 350 QLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTS 409
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT 784
LN HL+ELM GLTAKVFRTYNASITL L T
Sbjct: 410 LNKHLQELMDGLTAKVFRTYNASITLQEQLRALT 443
>gi|346979589|gb|EGY23041.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 909
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 278/716 (38%), Positives = 388/716 (54%), Gaps = 72/716 (10%)
Query: 152 SPVANSKESSPLDDRLKQSPQHNALAVVK-KEEIKDGNGLKSDDNDSEDDKPLSARLKGN 210
+P S + P+ D + SP + LA K + I N D +DS+DDKPL+ R K
Sbjct: 41 APAGISVRNGPVVDDMDLSPAQDGLAKRKARTSITKIN--YHDGSDSDDDKPLAKRQKTK 98
Query: 211 SKNVNQGIGASKADAAISEVNVKTDPE---------DSDDEVPLSSRFPKSNAGTSGAKP 261
SK + S D I K P DSDD+ PLS + A
Sbjct: 99 SKTKQES--DSDDDVPIMRKRAKMPPSYKETALPESDSDDDQPLSVKLAAKKAS------ 150
Query: 262 IDSDE-KKPLASKVQQNGSTSRE----TQQKSSSVPVKRPLQKASSSGASSAKKPKVSDT 316
I+ D K+ A + Q++ + + S P+ +P + S+G +AKK V D
Sbjct: 151 IEEDAAKEARAIRAQESKAKKPAAKKTIKDDSDDEPLAKP--RRQSNGVGAAKKRVVKDE 208
Query: 317 SKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKK 376
S D PI+++ K + P V AK TK+ + + K +
Sbjct: 209 S------------------DSDKPIAKKAKKATP-----VKTPAKGTKTKAVTPAKKGRP 245
Query: 377 TKKVIKNSQYSKSTKML----PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKE 430
KK P D KWTTL HNGV+ Y LP VK++Y GK
Sbjct: 246 AKKEESEEAEEDEAVDEWWNEPKKEDDSVKWTTLEHNGVLMDYKYEPLPKNVKLVYDGKP 305
Query: 431 VNLTPEQEEVATMFAVMLDT-DYMQKPKFRENFWNDWRKLL----------GKNHVIQNL 479
+NL + EE A F M + + + P F++NF+ D+R+++ GK I++
Sbjct: 306 LNLPLQVEEAAWFFGSMFHSKNNVDNPTFQKNFFEDFREVIKEHGPATDKDGKKVDIKDF 365
Query: 480 EGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
+++P+ D+ ++Q +K + EEKK +KEEK+ +EE + + + DG KEK+GNFRVEP
Sbjct: 366 HKINWQPMADYAEQQSAMRKNRTKEEKKQIKEEKDAREEPFKYCLWDGRKEKMGNFRVEP 425
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
P LFRGRG+HPK G++KK++ P ITINIGKD IP+ P G WK V HDN TWLA W
Sbjct: 426 PSLFRGRGDHPKTGRIKKQVFPEQITINIGKDAKIPKPP-DGHKWKAVVHDNKATWLASW 484
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
+ IN +KYV +SSS+KG+SD K+EKAR+LK +I IR Y KD S RQ
Sbjct: 485 QENIN-GAYKYVMTGSSSSVKGKSDHMKFEKARELKKHIDRIRRDYGKDLKSETMADRQR 543
Query: 660 AVATYLIDKLALRAG-NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNT 718
A A YLIDK ALRAG + ++EA+TVGCC+LK +V PN + FDFLGKDSI++ +
Sbjct: 544 ATAMYLIDKFALRAGNEKNAEEEAETVGCCSLKFEHVTLKEPNTVVFDFLGKDSIRFFDE 603
Query: 719 VEVELPVYKAIGQFQT-GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLD 777
VE V+K + F+ K + DD+FD+L T +LN HLK M GLTAKVFRTYNAS T+
Sbjct: 604 FTVERQVFKNLKIFKKPPKGEGDDIFDRLTTTQLNKHLKSYMDGLTAKVFRTYNASFTMS 663
Query: 778 GMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
+L + +A K+ +Y N++VAI+CNH+RTV H AQM +L ++I+ LK
Sbjct: 664 RLLQELPVEKATIAEKVKLYNDCNRKVAILCNHKRTVGAGHQAQMEKLGDRIKGLK 719
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 872 KMAQTNAKIEK----MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
K+ + KIE+ +E + ++ K VALGTSK+NY+DPR+TV + ++ +VPIEK F+
Sbjct: 829 KLLEGAKKIEERAKNLELQAQDRDGNKEVALGTSKLNYIDPRLTVVFSRKFDVPIEKFFS 888
Query: 928 KSLLAKFAWAM 938
K++ KF WA+
Sbjct: 889 KTMREKFNWAI 899
>gi|334326486|ref|XP_003340766.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I,
mitochondrial-like [Monodelphis domestica]
Length = 683
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/559 (42%), Positives = 315/559 (56%), Gaps = 76/559 (13%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G F P Y LP V Y GK + L+ EE+AT + MLD +Y K
Sbjct: 191 DGMK-WKQLEHKGPYFAPLYEPLPDEVHFYYDGKAMKLSLATEEIATFYGKMLDHEYTTK 249
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F+ NF+NDWRK + + +I++L+ CDF I+ + + E +K + EEK+ LKEE
Sbjct: 250 EVFQNNFFNDWRKEMTVEEKKIIKHLDKCDFTEIHKYFVNKNEARKALPKEEKQKLKEEA 309
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ +E++ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRI P D+ IN KD
Sbjct: 310 ERLQEEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKKRIMPEDVIINCSKDSK 369
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IPE P PG WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D +KYE AR+
Sbjct: 370 IPE-PPPGHKWKEVRFDNTVTWLASWTENIQ-NSIKYIMLNPSSKLKGEKDWQKYEVARR 427
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LK + IR Y D+ SR+ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V
Sbjct: 428 LKGVVDKIRFQYRFDWKSREMKXRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRV 487
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+++ L+ +LD +
Sbjct: 488 EHIQ---------------------------------------------LYHELDGQE-- 500
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRT 812
H+ E L R YN + K + ++A KI Y RAN+ VAI+CNHQR
Sbjct: 501 -HVVEF-DFLGKDSIRYYNKV-----PVEKPVTEDNIAAKILSYNRANRAVAILCNHQRA 553
Query: 813 VSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEA---- 868
KT M L KI K L + +L RAK +D K K+++ E+
Sbjct: 554 TPKTFEKSMQNLQTKINAKKEQLAMAKQELKRAK---------ADAKVKKDVKSESNVDK 604
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
++ +A+ ++ ++ KE+ K VALGTSK+NYLDPRI+VAWCK+ VP+EKI+NK
Sbjct: 605 KKKLLAKLEEQLMRLHTQATDKEENKQVALGTSKLNYLDPRISVAWCKKFGVPVEKIYNK 664
Query: 929 SLLAKFAWAMDV-DPEFRF 946
+ KFAWA+D+ D EF F
Sbjct: 665 TQREKFAWAIDMADEEFEF 683
>gi|154280290|ref|XP_001540958.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412901|gb|EDN08288.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 651
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/370 (50%), Positives = 248/370 (67%), Gaps = 16/370 (4%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
P GDG KWTTL HNGVIFPPPY LP VKM Y G + L PE EEVA F ML++
Sbjct: 270 PAKGDGTIKWTTLEHNGVIFPPPYEPLPKHVKMKYDGIPITLAPEAEEVAGFFGSMLNST 329
Query: 452 Y-MQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ ++ P F++NF+ D+ + G +++ E CDFKPI+++++ + +KK
Sbjct: 330 HNVENPTFQKNFFTDFTAYIKNSGGAKDPNGNPVAVKSFEKCDFKPIFEYYEAARLEKKS 389
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ S EKK LK EK++ E YM+ + DG K+KVGNFRVEPP LFRGRGEHPK GK+K R+
Sbjct: 390 LPSAEKKRLKAEKDELEAPYMYCMWDGRKQKVGNFRVEPPALFRGRGEHPKTGKVKTRVM 449
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P PG WKE+KHD TWLA W + +N +KYV LAA+S +K
Sbjct: 450 PEQITINIGKEAKVP-VPPPGHKWKEIKHDQEGTWLAMWQENVN-GNYKYVMLAANSDIK 507
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
G SD +K+EKAR+LK +I IR Y K + RQ A A YLID+ ALRAGNEK +D
Sbjct: 508 GLSDYKKFEKARELKKHIDRIRKDYKKGLKHELMSERQKATAVYLIDQFALRAGNEKGED 567
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQN 739
EADTVGCC+LK +V PPN + FDFLGKDSI++ + VEV+ V+K + F+ K++
Sbjct: 568 EADTVGCCSLKFEHVTLKPPNTVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKREG 627
Query: 740 DDLFDKLDTA 749
D++FD+L T+
Sbjct: 628 DEIFDRLTTS 637
>gi|22091413|gb|AAL87337.2| putative DNA topoisomerase I [Arabidopsis thaliana]
Length = 232
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 179/227 (78%), Positives = 200/227 (88%), Gaps = 1/227 (0%)
Query: 720 EVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
EVE VYKAIGQFQ GK + DDLFD+LDT+KLN HLKELM GLTAKVFRTYNASITLD M
Sbjct: 1 EVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLM 60
Query: 780 LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR 839
L+K T DGDV K+ VYQ+ANKEVAIICNHQRTVSK+H AQ+ +L KIE+L+ +K+L
Sbjct: 61 LSKETRDGDVPEKVVVYQQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKELN 120
Query: 840 VDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALG 899
+DLDRAKKG+ PLM SDGKRKRNL PEALE+K+ QT KIEKMERDM+TKED+KTVALG
Sbjct: 121 IDLDRAKKGRTPLM-GSDGKRKRNLTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVALG 179
Query: 900 TSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKFAWAMDVDPEFRF
Sbjct: 180 TSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPEFRF 226
>gi|365758450|gb|EHN00291.1| Top1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/347 (53%), Positives = 245/347 (70%), Gaps = 3/347 (0%)
Query: 487 IYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGR 546
++D+ Q QK++KKQ++S+EKK ++ E+ K EE Y + +DG KE+VGNF+VEPP LFRGR
Sbjct: 1 MFDYFQLQKDQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRKEQVGNFKVEPPDLFRGR 60
Query: 547 GEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPK 606
G HPK GKLK+R+ P DI +N+ KD +P P G W E++HDNTV WLA W + I
Sbjct: 61 GAHPKTGKLKRRVNPEDIVLNLSKDAAVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-N 118
Query: 607 EFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLI 666
FKYV LAA+SSLKGQSD +K+EKAR+LK YI++IR YT++ S+ RQ AVA YLI
Sbjct: 119 SFKYVRLAANSSLKGQSDYKKFEKARQLKSYINAIRRDYTRNLKSKVMLERQKAVAIYLI 178
Query: 667 DKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVY 726
D ALRAG EK DDEADTVGCC+L+ +V PPN + FDFLGKDSI++ VEV+ V+
Sbjct: 179 DVFALRAGGEKSDDEADTVGCCSLRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVF 238
Query: 727 KAIGQFQTGKKQ-NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG 785
K + F+ KQ LFD+LD + LN +L+ MPGLTAKVFRTYNAS T+ L+
Sbjct: 239 KNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPN 298
Query: 786 DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
G VA K+ Y AN+ VAI+CNHQRTV+K H+ + + +I++L+
Sbjct: 299 SGSVAEKLLKYNAANRTVAILCNHQRTVTKGHAQTVEKANNRIQELE 345
>gi|310831141|ref|YP_003969784.1| putative DNA topoisomerase IB [Cafeteria roenbergensis virus
BV-PW1]
gi|309386325|gb|ADO67185.1| putative DNA topoisomerase IB [Cafeteria roenbergensis virus
BV-PW1]
Length = 534
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 213/565 (37%), Positives = 321/565 (56%), Gaps = 41/565 (7%)
Query: 392 MLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTD 451
M G G +WT HNG +FP Y+PH + ++ KG ++ L P+ EE T FA +DT
Sbjct: 1 MFVLVGGGSNQWTVFRHNGPMFPEEYIPHNIPIIVKGNKITLKPDIEEKLTAFAKYIDTA 60
Query: 452 YMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
Y + PKF +NF+N+ + + + + + DF I + EQKEKK S EEK+ +KE
Sbjct: 61 YYENPKFIKNFFNEIKPNF-PDMSLNDFKEFDFSLIKKYLNEQKEKKLNKSKEEKEKIKE 119
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
+ + ++ Y +DG ++KVGNF++EPPG+F GRG HPK+GK K+RI P D+ +N+ K+
Sbjct: 120 QMTELDKPYASLQIDGGEQKVGNFKIEPPGIFLGRGSHPKIGKWKRRIYPEDVILNLDKN 179
Query: 572 VPIPECPI-PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
PIP+ + P W ++ H WLA W D I K KYVF + SS K SD+EK++
Sbjct: 180 APIPKPHLYPNRKWNKIVHQTEAIWLATWKDEITGKN-KYVFPSVESSFKADSDKEKFDL 238
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCT 689
ARKLK+ I IR +T+D S D RQ A A YLID+LA+R G +KD +EADTVG +
Sbjct: 239 ARKLKNKIGKIRTQFTEDMSSTDIVTRQYATALYLIDELAIRVGGKKDAKEEADTVGVTS 298
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTA 749
L+V ++ N +K DFLGKDS+++ V V+ + +F K + D+FDK+ +
Sbjct: 299 LRVEHITLNNNNNVKLDFLGKDSVRFCKVFSVSDIVWNNLKEFTENKTKKTDIFDKITSN 358
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG--------DVAVKIDVYQRANK 801
LN +LK M L+AKV+RT+ AS T LNK + + + + AN
Sbjct: 359 SLNNYLKSFMKDLSAKVWRTFKASTTFQKELNKVKTEDIKHFNESEKINYLLSKFNYANT 418
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRK 861
+VA++CNHQ+ +SK+ Q++++ +I++L +
Sbjct: 419 QVALLCNHQKGISKSFDEQINKIKNQIKEL-----------------------------R 449
Query: 862 RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+ + K AQ KI + ++TK +K V+LGTSK NY+DPRI V++ KR +
Sbjct: 450 KKKTKAKTKEKQAQYTNKILLAKSKLETKTKMKNVSLGTSKTNYIDPRIIVSFAKRFNLS 509
Query: 922 IEKIFNKSLLAKFAWAMDVDPEFRF 946
++K+F K+LL +F WA +VD + F
Sbjct: 510 LDKLFTKTLLKRFEWATNVDGNYIF 534
>gi|302415000|ref|XP_003005332.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261356401|gb|EEY18829.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 891
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 212/455 (46%), Positives = 291/455 (63%), Gaps = 18/455 (3%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDT- 450
P D KWTTL HNGV+ Y LP VK++Y GK +NL + EE A F M +
Sbjct: 249 PKKEDDSVKWTTLEHNGVLMDYKYEPLPKNVKLVYDGKPLNLPLQVEEAAWFFGSMFHSK 308
Query: 451 DYMQKPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQ 500
+ + P F++NF+ D+R+++ GK I++ +++P+ D+ ++Q +K
Sbjct: 309 NNVDNPTFQKNFFEDFREVIKEHGSATDKDGKKVDIKDFHKINWQPMADYAEQQSAMRKN 368
Query: 501 MSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
+ EEKK +KEEK+ +EE + + + DG KEK+GNFRVEPP LFRGRG+HPK G++KK++
Sbjct: 369 RTKEEKKQIKEEKDAREEPFKYCLWDGRKEKMGNFRVEPPSLFRGRGDHPKTGRIKKQVF 428
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGKD IP+ P G WK V HDN TWLA W + IN +KYV +SSS+K
Sbjct: 429 PEQITINIGKDAKIPKPP-DGHKWKAVVHDNKATWLASWQENINGA-YKYVMTGSSSSVK 486
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG-NEKDD 679
G+SD K+EKAR+LK +I IR Y KD S RQ A A YLID+ ALRAG + +
Sbjct: 487 GKSDHMKFEKARELKKHIDRIRRDYGKDLKSETMADRQRATAMYLIDRFALRAGNEKNAE 546
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQ 738
+EA+TVGCC+LK +V PN + FDFLGKDSI++ + VE V+K + F+ K +
Sbjct: 547 EEAETVGCCSLKFEHVTLKEPNTVVFDFLGKDSIRFFDEFTVERQVFKNLKIFKKPPKGE 606
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQ 797
DD+FD+L T +LN HLK M GLTAKVFRTYNAS T+ +L + +A K+ +Y
Sbjct: 607 GDDIFDRLTTTQLNKHLKSYMDGLTAKVFRTYNASFTMSRLLQELPVEKATIAEKVKLYN 666
Query: 798 RANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 832
N++VAI+CNH+RTV H AQM +L ++I+ LK
Sbjct: 667 DCNRKVAILCNHKRTVGAGHQAQMEKLGDRIKGLK 701
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 872 KMAQTNAKIEK----MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
K+ + KIE+ +E + ++ K VALGTSK+NY+DPR+TV + ++ +VPIEK F+
Sbjct: 811 KLLEGAKKIEERAKNLELQAQDRDGNKEVALGTSKLNYIDPRLTVVFSRKFDVPIEKFFS 870
Query: 928 KSLLAKFAWAM 938
K++ KF WA+
Sbjct: 871 KTMREKFNWAI 881
>gi|90855613|gb|ABE01168.1| IP16129p [Drosophila melanogaster]
Length = 382
Score = 355 bits (910), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 243/363 (66%), Gaps = 10/363 (2%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
ML+ DY K F NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S E
Sbjct: 1 MLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK K E +++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD+
Sbjct: 61 EKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
+IN GKD +P P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D
Sbjct: 121 SINCGKDSKVPSPP-PGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKD 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
KYE AR+L I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADT
Sbjct: 179 HIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADT 238
Query: 685 VGCCTLKVGNVECI-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN 739
VGCC+L+V +V+ N + FDF GKDSI+Y N VEVE V+K + F KK+
Sbjct: 239 VGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEG 298
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQR 798
DDLFD+L+T LN HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y R
Sbjct: 299 DDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNR 358
Query: 799 ANK 801
AN+
Sbjct: 359 ANR 361
>gi|71030242|ref|XP_764763.1| DNA topoisomerase I [Theileria parva strain Muguga]
gi|68351719|gb|EAN32480.1| DNA topoisomerase I, putative [Theileria parva]
Length = 1003
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 252/388 (64%), Gaps = 9/388 (2%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L HNG+IF P Y+PH V + KG+ ++L P EE+ATM+A + T+Y + +N
Sbjct: 336 RWKYLEHNGMIFTPEYVPHNVPIKVKGETIHLPPHLEEIATMWAQSIGTNYETSDIYCKN 395
Query: 462 FWNDWRKLLGKNHVIQN--LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
FW + K+H I+ L DF I H E +++KK+ + E KA ++E K+E +
Sbjct: 396 FWQVFVSKFEKDHFIRRCKLTDVDFSLI-KTHLEDEKQKKKDNKEFYKAKQQEDAKREYR 454
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP- 578
+ +A+VD V+EKV + ++EPPGLF+GRG HPK G LK R+ P D+ +N+ KD P+P+
Sbjct: 455 FNYALVDWVREKVSSNKLEPPGLFKGRGLHPKQGLLKARMFPKDVILNLSKDAPVPKVSN 514
Query: 579 --IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
G SWK++ HDN+VTWLA++ D IN +FKY++L+A S KG D KY KAR+LK
Sbjct: 515 FQREGHSWKDIYHDNSVTWLAYYKDSIN-DQFKYMYLSAQSKFKGFHDFLKYNKARELKA 573
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 696
YI IR Y +S D +Q+ A YLID LALR G EKD DEADTVGCC+L+V +++
Sbjct: 574 YIQKIRDDYNTKMLSMDIYEKQLGTAVYLIDFLALRVGGEKDADEADTVGCCSLRVEHIK 633
Query: 697 CIP--PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
N + DFLGKDSI+Y NTV + Y + +F KK ++++F+K++T KLN +
Sbjct: 634 FSEKKQNTITLDFLGKDSIRYFNTVTLNDVAYDNLAKFCHRKKASEEIFNKINTNKLNEY 693
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNK 782
L+ELM GL+AKVFRTYNASITL +
Sbjct: 694 LRELMDGLSAKVFRTYNASITLQNQFKR 721
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 19/179 (10%)
Query: 787 GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV---DLD 843
G+V+ + Y AN+EVAI+CNHQR++ K H M++L + + LK +++L L
Sbjct: 825 GNVSELLQFYNYANREVAILCNHQRSIPKQHETSMTKLKLQAKMLKEDIQELNEYCKHLQ 884
Query: 844 RAKKGKPPL---MKDSDGK-RKRNLAP----EALERKMAQTN----AKIEKMERD----M 887
KG+ KD +G RK P EA + K++ N A ++K ++D M
Sbjct: 885 SNSKGEFKFESKTKDVNGNPRKLITKPGMKLEAAKNKLSTLNYLCFAPLKKKQKDHAIKM 944
Query: 888 KTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
K+ KTVALGTSKINY+DPRITVA+CK++E+PIEK+FNKSL KF WAM V +F F
Sbjct: 945 TIKDSNKTVALGTSKINYMDPRITVAFCKKYEIPIEKVFNKSLRMKFPWAMYVRSDFTF 1003
>gi|84995602|ref|XP_952523.1| DNA topoisomerase i [Theileria annulata strain Ankara]
gi|65302684|emb|CAI74791.1| DNA topoisomerase i, putative [Theileria annulata]
Length = 999
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/448 (41%), Positives = 270/448 (60%), Gaps = 42/448 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L HNG+IF P Y+PH + ++ KG+ ++L P EE+ATM+A + T+Y + +N
Sbjct: 337 RWKYLEHNGMIFTPEYVPHNIPIMVKGETIHLPPNLEEIATMWAQSMGTNYETSEIYCKN 396
Query: 462 FWNDWRKLLGKNHVIQN--LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
FW + K+H I+ L DF I + +E+K+KKK + E KA ++E K+E +
Sbjct: 397 FWQVFVSKFEKDHFIRRCKLSDADFSLIKNHLEEEKQKKKD-NKEFYKAKQQEDAKREYR 455
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP- 578
+ +A+VD V+EKV + ++EPPGLF+GRG HPK G LK R+ P D+ +N+ KD P+P+
Sbjct: 456 FNYALVDWVREKVSSNKLEPPGLFKGRGLHPKQGLLKSRMFPKDVILNLSKDAPVPKVTN 515
Query: 579 --IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
G SWK++ HDN+VTWLA++ D IN +FKY++L+A S KG D KY KAR+LK
Sbjct: 516 FQREGHSWKDIYHDNSVTWLAYYKDSIND-QFKYMYLSAQSKFKGFHDFLKYNKARELKA 574
Query: 637 YIHSIRAAYTKDF--------VSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
YI IR Y ++ D +Q+ A YLID LALR G EKD DEADTVGCC
Sbjct: 575 YIQKIRDDYNTKMLCMTIIYTITLDIYEKQLGTAVYLIDYLALRVGGEKDADEADTVGCC 634
Query: 689 TLKVGNVECIP--PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKL 746
+L+V +++ N + DFLGKDSI+Y NT+ Y + +F KK ++ +F K+
Sbjct: 635 SLRVEHIKFSEKKKNTITLDFLGKDSIRYFNTLND--VAYDNLAKFCNRKKSSEGIFSKI 692
Query: 747 DTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAII 806
+T KLN +L+ELM GL+AKVFRTYNASITL + +
Sbjct: 693 NTNKLNEYLRELMDGLSAKVFRTYNASITLQNQFKR----------------------LR 730
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGV 834
++R++S TH+ S +T+ + DL G+
Sbjct: 731 SKYKRSIS-THTLLPSSVTDGLNDLNGL 757
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 102/172 (59%), Gaps = 13/172 (7%)
Query: 787 GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT-------EKIEDLKGVLKDLR 839
G+V+ + Y AN+EVAI+CNHQR++ K H M++L E I++L K L+
Sbjct: 829 GNVSELLQFYNYANREVAILCNHQRSIPKQHETSMTKLKLQAKMLKEDIQELNEYCKHLQ 888
Query: 840 VDLDRAKKGKPPLMKDSDGK-RKRNLAP----EALERKMAQTNAKIEKMERDMKTKEDLK 894
+ K + KD +G RK P EA + K+A K + M K+ K
Sbjct: 889 SNSKDEFKFESK-TKDVNGNPRKLITKPGMKLEAAKNKLATLKKKQKDHNIKMTIKDSNK 947
Query: 895 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TVALGTSKINY+DPRITVA+CK++E+PIEK+FNKSL KF WAM V +F F
Sbjct: 948 TVALGTSKINYMDPRITVAFCKKYEIPIEKVFNKSLRMKFPWAMCVRSDFTF 999
>gi|317447687|emb|CBK00915.1| topoisomerase 1 [Albonectria rigidiuscula]
Length = 482
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/310 (55%), Positives = 217/310 (70%), Gaps = 8/310 (2%)
Query: 529 KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK 588
KEKVGNFRVEPPGLFRGRGEHPK GK+K R+ P ITINIGKD +P+ P G WK V+
Sbjct: 2 KEKVGNFRVEPPGLFRGRGEHPKTGKVKNRVAPEQITINIGKDAKVPDPP-KGHKWKAVQ 60
Query: 589 HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKD 648
HD TWLA W + IN +KYV L A S +KG+SD +K+EKAR+LK +I IR YTK+
Sbjct: 61 HDQKATWLAMWQENING-NYKYVMLGADSDIKGKSDFKKFEKARELKKHIDRIRKDYTKE 119
Query: 649 FVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDF 707
S RQ A A YLID+LALRAGNEKD ++EADTVGCC+LK ++ PPN++ FDF
Sbjct: 120 LKSEVMADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITLEPPNQVTFDF 179
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
LGKDSI Y T VE V+K + F+ K + DDLFD+L+T++LN HL MPGLTAKV
Sbjct: 180 LGKDSIPYRETATVEPQVFKNLKLFKKAPKTKGDDLFDRLNTSQLNKHLTNCMPGLTAKV 239
Query: 767 FRTYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS 822
FRTYNAS T+ +L + D G VA K+ +Y N++VAI+CNH+RTV H QM
Sbjct: 240 FRTYNASYTMSELLKEIAKDPRSRGSVAEKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQ 299
Query: 823 RLTEKIEDLK 832
+L ++I+ L+
Sbjct: 300 KLGDRIKGLR 309
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 894 KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
K VALGTSKINY+DPR+TV + K+ +VPIEK F+K+
Sbjct: 445 KEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKTF 481
>gi|317447685|emb|CBK00914.1| topoisomerase 1 [Fusarium solani]
Length = 480
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 213/308 (69%), Gaps = 8/308 (2%)
Query: 531 KVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHD 590
KVGNFRVEPPGLFRGRGEHPK G++K R+ P ITINIGK IP+ P G WK V+HD
Sbjct: 2 KVGNFRVEPPGLFRGRGEHPKTGRVKNRVTPEQITINIGKGAKIPDPP-KGHQWKAVQHD 60
Query: 591 NTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFV 650
TWLA W + IN +KYV L A+S +KGQSD +K+EKAR+LK +I IR YTK+
Sbjct: 61 QKATWLAMWQENIN-NNYKYVMLGAASDIKGQSDFKKFEKARELKKHIDRIRKDYTKELK 119
Query: 651 SRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNVECIPPNKLKFDFLG 709
S RQ A A YLID+LALRAGNEKD ++EADTVGCC+LK ++ PPNK+ FDFLG
Sbjct: 120 SEVMADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITLEPPNKVTFDFLG 179
Query: 710 KDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
KDSI Y T VE V+K + F+ K + DDLFD+L T +LN HL MPGLTAKVFR
Sbjct: 180 KDSIPYRETAHVEPQVFKNLKLFKKAPKTKGDDLFDRLTTTQLNKHLTNYMPGLTAKVFR 239
Query: 769 TYNASITLDGMLNKGTGD----GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRL 824
TYNAS T+ +L + D G VA K+ +Y N+EVAI+CNH+RTV H QM +L
Sbjct: 240 TYNASFTMSELLKGLSKDPRSRGSVAEKVKLYNDCNREVAILCNHKRTVGAGHEQQMQKL 299
Query: 825 TEKIEDLK 832
++I+ L+
Sbjct: 300 GDRIKGLR 307
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 41/56 (73%)
Query: 873 MAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
+ + + +++ +E + ++ K VALGTSKINY+DPR+TV + K+ +VPIEK F+K
Sbjct: 422 IEKLDERVKVLETQAEDRDGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSK 477
>gi|149057192|gb|EDM08515.1| rCG63558 [Rattus norvegicus]
Length = 378
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 239/369 (64%), Gaps = 16/369 (4%)
Query: 431 VNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN--HVIQNLEGCDFKPIY 488
+ L+P+ EEVAT FA MLD +Y K FR+NF+ DWRK + + + I NL CDF +
Sbjct: 1 MKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFTQMS 60
Query: 489 DWHQEQKEKKKQMSSEEKKALKEEKNKQE--------EKYMWAIVDGVKEKVGNFRVEPP 540
+ + Q E +KQMS + + +E+ + ++Y + ++D KE++ NF++EPP
Sbjct: 61 QYFKAQSEARKQMSRCWHRQMSKEEKLKIKEENEKLLKEYGFCVMDNHKERIANFKIEPP 120
Query: 541 GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWN 600
GLFRGRG HPKMG LK+RI P DI IN KD +P P PG WKEV+HDN VTWL W
Sbjct: 121 GLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS-PPPGHKWKEVRHDNKVTWLVSWT 179
Query: 601 DPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIA 660
+ I KY+ L SS +KG+ D +KYE AR+LK + IR Y +D+ S++ RQ A
Sbjct: 180 ENIQ-GSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRA 238
Query: 661 VATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIPP---NKLKFDFLGKDSIQYV 716
VA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++ P + ++FDF GKDSI+Y
Sbjct: 239 VALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGHVVEFDFPGKDSIRYY 298
Query: 717 NTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
N V VE V+K + F K+ DDLFD+L+T LN HL+ LM GLTAKVFRTYNASITL
Sbjct: 299 NKVPVEKRVFKNLQPFMENKQPEDDLFDRLNTGILNKHLQGLMEGLTAKVFRTYNASITL 358
Query: 777 DGMLNKGTG 785
L + T
Sbjct: 359 QQQLKELTA 367
>gi|300521520|gb|ADK25971.1| topoisomerase IB [Candidatus Nitrososphaera gargensis]
Length = 558
Score = 335 bits (859), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 211/565 (37%), Positives = 320/565 (56%), Gaps = 65/565 (11%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL H GV FPP Y P G+ + +G+++ L +QEE+ +A DT Y+Q P F+EN
Sbjct: 11 KWQTLEHKGVAFPPEYQPRGIVVTIRGEKLALNRDQEELIYAWAKKKDTHYVQDPVFQEN 70
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE-------QKEKKKQMSSEEKK----ALK 510
F +D R LL + ++ DF Y E +KE+ K ++ EEKK A K
Sbjct: 71 FMSDLRPLLPEKFRNITIKDIDFSAAYRLADEEKRMKEQEKERYKTLAKEEKKKISLAKK 130
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
E+ + + Y A+VDGV+ + N+ VEPPGLF GRG+HP G+ K R++P D+T+N+G+
Sbjct: 131 AERERLKATYGKAVVDGVEVDIANWLVEPPGLFMGRGQHPMRGRWKPRVRPQDVTLNLGE 190
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
+ P+PE +WKE+ HD++ TWLA W + + K KYV+L S++L+ ++DR KY+K
Sbjct: 191 NAPVPEG-----NWKEIVHDHSSTWLATWIENLTGKR-KYVWLHDSAALRQENDRAKYDK 244
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQI------AVATYLIDKLALRAGNEKDDDEADT 684
A+KL A + V R+ RR + A YLI KLA+R G+EKD DEADT
Sbjct: 245 AKKL---------AEQESRVHREVIRRMMKGGDKTATVAYLILKLAMRVGDEKDPDEADT 295
Query: 685 VGCCTLKVGNVECIPP----NKLKFDFLGKDSIQYVNTVEVEL----PVYKAIGQFQTGK 736
VG TL+V +++ ++F+FLGKDS+ + T+EV +Y+ + +F GK
Sbjct: 296 VGASTLRVEHIKFPQAGGGRQMIEFNFLGKDSVPWQKTLEVNSDDTKALYENLKKFMQGK 355
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV--AVKID 794
K +D +FD +++ K+NA L+E+MPGLTAKVFRT A+ + L+K D + A KI
Sbjct: 356 KPSDPIFDGINSRKVNAFLQEIMPGLTAKVFRTCIATRVVQQELSKAKVDKNSSEAQKIY 415
Query: 795 VYQRANKEVAIICNHQRTVSKTHSA---QMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
++AN E AI CNH++ V + A + + E I K + L+ D+ AKK K
Sbjct: 416 AARKANLEAAIKCNHKKGVDPKNPAAKKALEKFEESIAKKKEAIAQLKADIA-AKKWKTE 474
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
L E+++ + ++EK+E +K +++ + LGTS NY+DPR+
Sbjct: 475 LQ----------------EQRLKE---RLEKIEVQLKLQQETRDYNLGTSLRNYIDPRVM 515
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAW 936
AW E+ K++ +L KF W
Sbjct: 516 KAWLNYVELDWTKVYTATLQRKFKW 540
>gi|408403066|ref|YP_006861049.1| DNA topoisomerase IB [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363662|gb|AFU57392.1| DNA topoisomerase IB [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 549
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 211/565 (37%), Positives = 320/565 (56%), Gaps = 65/565 (11%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL H GV FPP Y P G+ + +G+++ L +QEE+ +A DT Y+Q P F+EN
Sbjct: 2 KWQTLEHKGVAFPPEYQPRGIVVTIRGEKLALNRDQEELIYAWAKKKDTHYVQDPVFQEN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE-------QKEKKKQMSSEEKK----ALK 510
F +D R LL + ++ DF Y E +KE+ K ++ EEKK A K
Sbjct: 62 FMSDLRPLLPEKFRNITIKDIDFSAAYRLADEEKRMKEQEKERYKTLAKEEKKKISLAKK 121
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
E+ + + Y A+VDGV+ + N+ VEPPGLF GRG+HP G+ K R++P D+T+N+G+
Sbjct: 122 AERERLKATYGKAVVDGVEVDIANWLVEPPGLFMGRGQHPMRGRWKPRVRPQDVTLNLGE 181
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
+ P+PE +WKE+ HD++ TWLA W + + K KYV+L S++L+ ++DR KY+K
Sbjct: 182 NAPVPEG-----NWKEIVHDHSSTWLATWIENLTGKR-KYVWLHDSAALRQENDRAKYDK 235
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQI------AVATYLIDKLALRAGNEKDDDEADT 684
A+KL A + V R+ RR + A YLI KLA+R G+EKD DEADT
Sbjct: 236 AKKL---------AEQESRVHREVIRRMMKGGDKTATVAYLILKLAMRVGDEKDPDEADT 286
Query: 685 VGCCTLKVGNVECIPP----NKLKFDFLGKDSIQYVNTVEVEL----PVYKAIGQFQTGK 736
VG TL+V +++ ++F+FLGKDS+ + T+EV +Y+ + +F GK
Sbjct: 287 VGASTLRVEHIKFPQAGGGRQMIEFNFLGKDSVPWQKTLEVNSDDTKALYENLKKFMQGK 346
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDV--AVKID 794
K +D +FD +++ K+NA L+E+MPGLTAKVFRT A+ + L+K D + A KI
Sbjct: 347 KPSDPIFDGINSRKVNAFLQEIMPGLTAKVFRTCIATRVVQQELSKAKVDKNSSEAQKIY 406
Query: 795 VYQRANKEVAIICNHQRTVSKTHSA---QMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
++AN E AI CNH++ V + A + + E I K + L+ D+ AKK K
Sbjct: 407 AARKANLEAAIKCNHKKGVDPKNPAAKKALEKFEESIAKKKEAIAQLKADIA-AKKWKTE 465
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
L E+++ + ++EK+E +K +++ + LGTS NY+DPR+
Sbjct: 466 LQ----------------EQRLKE---RLEKIEVQLKLQQETRDYNLGTSLRNYIDPRVM 506
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAW 936
AW E+ K++ +L KF W
Sbjct: 507 KAWLNYVELDWTKVYTATLQRKFKW 531
>gi|443893770|dbj|GAC71226.1| DNA topoisomerase I [Pseudozyma antarctica T-34]
Length = 1050
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 195/492 (39%), Positives = 278/492 (56%), Gaps = 48/492 (9%)
Query: 388 KSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFA 445
K K + +G G+KKW LVH G FP PY LP VK+ Y G+ V+L PE EEVA +A
Sbjct: 169 KPPKTMSITGSGEKKWDVLVHKGPRFPDPYQPLPKDVKLKYDGEPVDLPPETEEVAMFYA 228
Query: 446 VMLDTDYMQKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQK----E 496
V ++T + Q P F NF++D+ L K I++ + DF+ +Y++ + K E
Sbjct: 229 VKIETQHAQNPIFNRNFFDDFTADLKKFPPRDGTQIKSFDKLDFRDMYNYWRSLKDAENE 288
Query: 497 KKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
+KK ++ +K E + +E + +VDGV+++VGN VEPPGLF GRG HPK GK+K
Sbjct: 289 RKKALAPSARKREIEARKVEENTWKICLVDGVEQRVGNVNVEPPGLFLGRGAHPKAGKVK 348
Query: 557 KRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAS 616
+RI P DITIN + P P P W EV VTWLA+W + IN ++KYVFL A+
Sbjct: 349 RRIYPGDITINHSAEHPAPSPPPGLGDWGEVVEKKDVTWLAYWKENIN-GQYKYVFLDAT 407
Query: 617 SSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE 676
S+ K SDREK+EKARKL + IR K+ S+ RQIA +LID +LRAGNE
Sbjct: 408 SNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRNERQIATIVWLIDNFSLRAGNE 467
Query: 677 KDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQF--- 732
K +DEA+T G C+L+ + + P+ + +FLGKDS+++ +++ P V+K I F
Sbjct: 468 KGEDEAETYGVCSLRCEHAQVKMPDTIHLEFLGKDSMKFEEDLKITNPDVFKNITMFLKT 527
Query: 733 -----QTG----KKQNDDLF-----------DKLDTAKLNAHLKELMPGLTAKVFRTYNA 772
++G KK ND +F L + +N L + M GL+AKVFRTYNA
Sbjct: 528 NGMKDKSGNYVRKKPNDPIFCAPGDSAAGKMQPLQPSAVNTFLSKYMKGLSAKVFRTYNA 587
Query: 773 SITLDGML-----------NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS-KTHSAQ 820
S+T G+L NK + + Y AN++VAI+CNHQ+TV+ +
Sbjct: 588 SVTFQGLLEQTEEWLRSRPNKAEREINQTNLRLAYNEANRQVAILCNHQKTVNPMLLNRN 647
Query: 821 MSRLTEKIEDLK 832
+ R EKI ++
Sbjct: 648 LERTQEKIFQIR 659
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 863 NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
N A A +K+ + I K E ++ K + VAL TSK+NY+DPRIT+AW K
Sbjct: 804 NFASSA--KKILSKHDMIRKQEAELVNKNNASDVALSTSKLNYIDPRITLAWLK 855
>gi|71022035|ref|XP_761248.1| DNA topoisomerase I [Ustilago maydis 521]
gi|119370536|sp|P41511.2|TOP1_USTMA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|46097742|gb|EAK82975.1| TOP1_USTMA DNA topoisomerase I [Ustilago maydis 521]
Length = 1019
Score = 329 bits (843), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 187/469 (39%), Positives = 269/469 (57%), Gaps = 46/469 (9%)
Query: 391 KMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML 448
K + +G G+KKW L+H G FP PY LP VK+ Y G+ V+L + EE+A +AV L
Sbjct: 151 KTMSITGSGEKKWDVLIHKGPRFPDPYQPLPKDVKLKYDGRPVDLPWQTEEIAMFYAVKL 210
Query: 449 DTDYMQKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQK----EKKK 499
+T + Q F NF++D++ L K I++ + DF+ +Y++ + K E+KK
Sbjct: 211 ETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKLDFRDMYNYWRSLKDAELERKK 270
Query: 500 QMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 559
++ +K EE+ +E K+ +VDGV+++VGN VEPPGLF GRG HPK GK+K+RI
Sbjct: 271 ALAPSARKREIEERKAEETKWKICLVDGVEQRVGNVNVEPPGLFLGRGAHPKAGKVKRRI 330
Query: 560 QPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 619
P DITIN D P P+ P W EV VTWLA+W + IN ++KYVFL A+S+
Sbjct: 331 SPGDITINHSADHPAPQPPAGMGDWAEVVEKKDVTWLAYWKENING-QYKYVFLDATSNF 389
Query: 620 KGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDD 679
K SDREK+EKARKL + IR K+ S+ RQIA +LID +LRAGNEK +
Sbjct: 390 KTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQIATIVWLIDNFSLRAGNEKGE 449
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQF------ 732
DEA+T G C+L+ + + P+ + +FLGKDS+++ +++ P V+K I F
Sbjct: 450 DEAETYGVCSLRCEHAQIKMPDTIHLEFLGKDSMKFEEDLKITNPDVFKNIAMFLKSNGM 509
Query: 733 --QTG----KKQNDDLF----------DKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
++G KK +D +F L +N L + M GL+AKVFRTYNAS+T
Sbjct: 510 KDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSVNQFLSKYMKGLSAKVFRTYNASVTF 569
Query: 777 DGML-----------NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
G+L N + + Y AN++VAI+CNHQ+TV+
Sbjct: 570 QGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEANRQVAILCNHQKTVN 618
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
I+K E ++ K + VAL TSK+NY+DPRIT+AW K
Sbjct: 797 IKKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLK 833
>gi|343428751|emb|CBQ72296.1| DNA topoisomerase I [Sporisorium reilianum SRZ2]
Length = 1033
Score = 328 bits (841), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 192/483 (39%), Positives = 279/483 (57%), Gaps = 47/483 (9%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
+G G+KKW LVH G FP PY LP VK+ Y GK V+L P+ EEVA +AV L+T +
Sbjct: 168 TGSGEKKWDVLVHKGPRFPDPYQPLPKDVKLKYDGKPVDLPPQTEEVAMFYAVKLETQHA 227
Query: 454 QKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQK----EKKKQMSSE 504
Q F NF++D++ L K I++ + DF+ +Y++ + K E+KK ++
Sbjct: 228 QNAIFNRNFFDDFKADLKKYPPRDGTQIKSFDKLDFRDMYNYWRSLKDAELERKKSLAPS 287
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
+K EE+ +E K+ +VDG++++VGN VEPPGLF GRG HPK+GK+K+RI P DI
Sbjct: 288 ARKREIEERKVEETKWKVCLVDGIEQRVGNVNVEPPGLFLGRGAHPKVGKVKRRIFPGDI 347
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TIN P P+ P W EV VTWLA+W + IN ++KYVFL A+S+ K SD
Sbjct: 348 TINHSAKHPAPQPPAGMGDWVEVVEKKDVTWLAYWKENIN-GQYKYVFLDATSNFKTNSD 406
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADT 684
REK+EKARKL + IR K+ S+ RQIA +LID +LRAGNEK +DEA+T
Sbjct: 407 REKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQIATIVWLIDNFSLRAGNEKGEDEAET 466
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQF--------QTG 735
G C+L+ + + P+ + +FLGKDS+++ +++ P V+K I F ++G
Sbjct: 467 YGVCSLRCEHAQIKMPDTIHLEFLGKDSMKFEEDLKITNPDVFKNIAMFLKTNGMKDKSG 526
Query: 736 ----KKQNDDLF----------DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
KK +D +F L + +N L + M GL+AKVFRTYNAS+T G+L
Sbjct: 527 NFVRKKPSDPIFCAPESGSGKMQPLQPSSVNQFLSKYMKGLSAKVFRTYNASVTFQGLLE 586
Query: 782 KG---TGDGDVAVKIDV--------YQRANKEVAIICNHQRTVS-KTHSAQMSRLTEKIE 829
+ A + ++ Y AN++VAI+CNHQ+TV+ + + R EKI
Sbjct: 587 QTEEWLKSRPKAAEREINQTNLRLAYNEANRQVAILCNHQKTVNPMLLNRNLERTQEKIF 646
Query: 830 DLK 832
++
Sbjct: 647 QIR 649
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
I K E ++ K + VAL TSK+NY+DPRIT+AW K
Sbjct: 809 IRKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLK 845
>gi|164660612|ref|XP_001731429.1| hypothetical protein MGL_1612 [Malassezia globosa CBS 7966]
gi|159105329|gb|EDP44215.1| hypothetical protein MGL_1612 [Malassezia globosa CBS 7966]
Length = 877
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 270/476 (56%), Gaps = 43/476 (9%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
G G+++WTTL+H G FP PY LP V + Y G V L PE EEVA +AV L++ +
Sbjct: 116 GGGEQRWTTLIHKGPKFPEPYTPLPKDVMLKYDGHPVPLPPESEEVAMFYAVKLESQHAS 175
Query: 455 KPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQK----EKKKQMSSEE 505
P F NF+ D+ L + IQ E DF+ +Y++ K E+KK M+
Sbjct: 176 NPIFNRNFFEDFCGYLKQYPPKDGTKIQKFEKLDFRDMYNYWMSLKVAEAERKKSMAPSM 235
Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
+KA + + +Y +VDG+++K GN VEPPGLF GRG HPK G++K RIQP IT
Sbjct: 236 RKAELAARRAIDNEYKLCLVDGIEQKAGNVTVEPPGLFLGRGAHPKAGRVKTRIQPEQIT 295
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
IN D P P G SW EV VTWLA W + IN FKYVFL ASS+ K +SDR
Sbjct: 296 INHSAD-HPPPKPPKGHSWGEVVERKDVTWLALWRENINGG-FKYVFLDASSTFKTESDR 353
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
EK+EKAR+L + +RA K+ S+D + IA +LID +LRAGNEK +DEA+T
Sbjct: 354 EKFEKARRLDTCVKQVRADVLKNLRSKDRLDQMIATIVWLIDNFSLRAGNEKGEDEAETY 413
Query: 686 GCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQF-----QTGKKQN 739
G C+L+ G+ IPPN+L FLGKDS+++ T+ + P VYK I F K +
Sbjct: 414 GVCSLRCGHATLIPPNQLNLSFLGKDSMKFEETLTITNPHVYKNITSFLKSDGHQKKGPD 473
Query: 740 DDLF-------DKLDTAK---LNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT----- 784
D +F DK+ +N L M GL+AKVFRTYNAS T G+L++
Sbjct: 474 DPIFAAPKARGDKMTPLPPDVVNQFLGRYMKGLSAKVFRTYNASATFQGLLDETEEWLAS 533
Query: 785 ----GDGDVA---VKIDVYQRANKEVAIICNHQRTVSK-THSAQMSRLTEKIEDLK 832
+ ++ ++I Y AN++VAI+CNHQ+TV+ T + + R +KI +K
Sbjct: 534 RPTPQEREITPANLRI-AYNEANRQVAILCNHQKTVNHVTLNKSLDRTKDKIFAIK 588
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
R++ I+K E ++ K + V+LGTSK+NY+DPRITVAW K+ + ++ +
Sbjct: 734 RRILSKYEAIKKQEAELLNKNNTSDVSLGTSKMNYIDPRITVAWLKKWDAKLQTM 788
>gi|407465318|ref|YP_006776200.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048506|gb|AFS83258.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 555
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 207/549 (37%), Positives = 311/549 (56%), Gaps = 21/549 (3%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL HNG++FPP Y G+K+ KG+ VNL QEE+ +A DT Y+Q F++N
Sbjct: 2 KWKTLQHNGILFPPAYEAQGIKIKIKGEPVNLDLNQEEMVYQWAKKKDTPYVQDKVFQKN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQE 517
F D+ K L + E DF Y ++K+ K+ M+ EEKK+L KE + K +
Sbjct: 62 FTADFAKTLDSKFKKISYEDIDFSNAYKIVDKEKDLKEMMTKEEKKSLAAKRKELREKLK 121
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
EK+ AI+DG + +VGN+ EPPG+F GRGEHP G+ K R+ D+T+N+GK+ +PE
Sbjct: 122 EKFGIAIMDGKEVEVGNYMAEPPGIFIGRGEHPLRGRWKPRVTAKDVTLNLGKEAKVPEG 181
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
W ++ HD WLA W D + K KYV+LA ++ LK D+EKYEKA KL
Sbjct: 182 -----KWGKIIHDKNSMWLASWMDFLTQKR-KYVWLADTAGLKQDRDKEKYEKAVKLAKE 235
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I+ I+ KD S+D +IA A YLI + A+R G+EKD +EADTVG TL+ +++
Sbjct: 236 INKIKDRIVKDMKSKDPKISRIATACYLIYRTAMRVGDEKDPEEADTVGATTLRKEHIK- 294
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVE---LPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
I PN ++FDFLGKDS+++ TV E ++ + + KK D++FD + + +N +
Sbjct: 295 ITPNAIEFDFLGKDSVRWQETVVAEGHDKQFHENLKKLVEKKKPKDEIFDDITSRHVNQY 354
Query: 755 LKELMPGLTAKVFRTYNASITL-DGMLNKGTGDGDVAV-KIDVYQRANKEVAIICNHQRT 812
++ GLTAKVFRTY A+ + + ++ G A K+ + AN E A++CNH+RT
Sbjct: 355 YSSIVKGLTAKVFRTYLATTVVKNYLVEHDNMKGKTATEKLYHAKLANLEAAMMCNHKRT 414
Query: 813 VSKT--HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL--MKDSDGKRKRNLAPEA 868
+ KT S Q R T K + + K + L + + +P K + KR + L E
Sbjct: 415 IPKTFEQSLQKKRDTLKKVEKEQAWKKTQETLKKVEASEPKTDAQKKTKAKRIKTL-NEQ 473
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
++++ ++ ++EK+E + E K +GTS NY+DPR+ AW EK++
Sbjct: 474 IKKQKSKHKERLEKLELQIDLSEKTKDYNIGTSLRNYIDPRVFKAWTDEVGAEWEKLYTS 533
Query: 929 SLLAKFAWA 937
+L KF W
Sbjct: 534 ALQKKFLWV 542
>gi|474909|gb|AAC37415.1| topoisomerase I [Ustilago maydis]
Length = 1019
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 185/469 (39%), Positives = 266/469 (56%), Gaps = 46/469 (9%)
Query: 391 KMLPGSGDGQKKWTTLVHNGVIFPPPYLPHG--VKMLYKGKEVNLTPEQEEVATMFAVML 448
K + +G G+KKW L+H G FP PY P VK+ Y G+ V+L + EE+A +AV L
Sbjct: 151 KTMSITGSGEKKWDVLIHKGPRFPDPYQPLAKDVKLKYDGRPVDLPCQTEEIAMFYAVKL 210
Query: 449 DTDYMQKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQK----EKKK 499
+T + Q F NF++D++ L K I++ + DF+ +Y++ + K E+KK
Sbjct: 211 ETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKLDFRDMYNYWRSLKDAELERKK 270
Query: 500 QMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 559
++ +K EE+ +E K+ +VDGV+++VGN VEPPGLF GRG HPK GK+K+RI
Sbjct: 271 ALAPSARKREIEERKAEETKWKICLVDGVEQRVGNVNVEPPGLFLGRGAHPKAGKVKRRI 330
Query: 560 QPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 619
P DITIN D P P+ P W EV VTWLA+W + IN ++KYVFL A+S+
Sbjct: 331 SPGDITINHSGDHPAPQPPAGMGDWAEVVEKKDVTWLAYWKENING-QYKYVFLDATSNF 389
Query: 620 KGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDD 679
K SDREK+EKARKL + IR K+ S+ RQIA LID +LRAGNEK +
Sbjct: 390 KTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQIATIVCLIDNFSLRAGNEKGE 449
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQF------ 732
DE +T G C+L+ + + P+ + +FLGKDS+++ +++ P V+K I F
Sbjct: 450 DETETYGVCSLRCEHAQIKMPDTIHLEFLGKDSMKFEEDLKITNPDVFKNIAMFLKSNGM 509
Query: 733 --QTG----KKQNDDLF----------DKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
++G KK +D +F L +N L + M GL+AKVFRTYNAS+T
Sbjct: 510 KDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSVNQFLSKYMKGLSAKVFRTYNASVTF 569
Query: 777 DGML-----------NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
G+L N + + Y AN++VAI+CNHQ+TV+
Sbjct: 570 QGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEANRQVAILCNHQKTVN 618
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
I+K E ++ K + VAL TSK+NY+DPRIT+AW K
Sbjct: 797 IKKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLK 833
>gi|385302927|gb|EIF47032.1| dna topoisomerase i [Dekkera bruxellensis AWRI1499]
Length = 385
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 167/330 (50%), Positives = 220/330 (66%), Gaps = 9/330 (2%)
Query: 527 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKE 586
VK ++ F++EPPGLFRGRG HPK G LK+R+ P +T+N+G + +P P G +WKE
Sbjct: 2 AVKXRLEIFKIEPPGLFRGRGAHPKTGMLKRRVYPEQVTLNLGNEAEVP-LPPKGHNWKE 60
Query: 587 VKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYT 646
V+HDNTV+WLA W + I+ FKYV A +SSLKG SD +K+EKAR LK+ I IR Y
Sbjct: 61 VRHDNTVSWLAMWRENIS-NSFKYVRFANNSSLKGISDFKKFEKARALKNVIDDIRKDYR 119
Query: 647 KDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFD 706
+ S+ RQIA ATY ID LALRAG EK +DEADTVGCC+L+ ++ PPN + FD
Sbjct: 120 RKLKSKLMIERQIATATYFIDVLALRAGGEKSEDEADTVGCCSLRYEHIFLRPPNTVIFD 179
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
FLGKDS+++ VEV+ V+K + F+ KK DDLFD+LD + LN + +PGLTAK
Sbjct: 180 FLGKDSVRFYQEVEVDPQVFKNLRIFKKAPKKPGDDLFDRLDPSILNKYFHSYLPGLTAK 239
Query: 766 VFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
VFRTYNAS T+ LB G V K+ + AN+EVAI+CNHQR VSK A + ++
Sbjct: 240 VFRTYNASKTMQDQLBLIPNKGTVNEKVVRFNAANREVAILCNHQRNVSKGFEASVQKMN 299
Query: 826 EKIEDL---KGVLKDLRVDLD---RAKKGK 849
EKIE++ K LK + + LD + KKGK
Sbjct: 300 EKIEEMQWRKFRLKRMMLQLDKNLKRKKGK 329
>gi|358415316|ref|XP_003583073.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I, mitochondrial
[Bos taurus]
gi|359072172|ref|XP_003586922.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I, mitochondrial
[Bos taurus]
Length = 725
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 226/581 (38%), Positives = 320/581 (55%), Gaps = 46/581 (7%)
Query: 399 GQKKWTTLVHNGVIFPPPY--LPHGV-----------------KMLYKGKEVNLTPEQEE 439
G KWT L H G F PY LP GV L + +N++ EE
Sbjct: 158 GGVKWTQLEHRGPWFAAPYEPLPEGVPSTTVRTAPAAQVAVGRAALSIREALNVSLAAEE 217
Query: 440 VATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEK 497
VAT + LD +Y K F+ NF++DWRK + + VI++L+ CDF I+ ++
Sbjct: 218 VATFYGKKLDREYT-KEVFQNNFFSDWRKEMTAEEGRVIKHLDRCDFTEIHRHSVDKTAS 276
Query: 498 KKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 557
+K +S EEK+ LKEE+ K ++++ +I+DG +EK+G+F+ E P RGRG+HPKM +LK+
Sbjct: 277 QKALSREEKQKLKEEEEKLQQEFGCSILDGHREKIGSFKTEXPWSVRGRGDHPKMERLKR 336
Query: 558 RIQPSDITINIGK--DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEF-KYVFLA 614
R+ P D+ IN + D +PE P G WKEV D TV WLA W + N + F KYV L
Sbjct: 337 RVLPEDVVINCSRCPDSTVPE-PPAGPQWKEVGCDCTVMWLAAWTE--NVQNFIKYVTLN 393
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
LKG+ D KYE A +LK + I + Y S + RQ AVA Y I+KLAL+
Sbjct: 394 PGCKLKGERDWGKYEAAWRLKGAVGKICSQYRTAGTSPEMRTRQRAVALYFINKLALQ-- 451
Query: 675 NEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAI 729
++ GCC+L+V +++ P P+ ++FDFLGKDSI+ N V VE PVY+ +
Sbjct: 452 TGNGEEGGGLGGCCSLRVEHLQLYPEASGSPDVVEFDFLGKDSIRSYNRVLVEKPVYRNL 511
Query: 730 GQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGD 788
F K D LFD+L TA LN HL++ GLTA+VFRTYN S+ L G L +
Sbjct: 512 QLFMDNKXPRDXLFDRLTTASLNRHLQDPTDGLTARVFRTYNTSVMLQGQLQALPRAEDS 571
Query: 789 VAVKIDVYQRANKEVAIICNHQRTVSKTH--SAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
VA K+ Y AN+ V +CNHQ T KT SAQM + + IE + + + + +L A
Sbjct: 572 VAAKLLSYNXANRAVDFLCNHQCTTPKTFEKSAQMLQ-SPSIEAKEQQVAEAKTELQEAG 630
Query: 847 KGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYL 906
DG+ + +L E R + + ++ ++ KE K VALGTS++ L
Sbjct: 631 ADH---TSRGDGRSQSSL--EKRGRLLEKLEEQLLRVSTQATDKEGSKQVALGTSELICL 685
Query: 907 DPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
DPRI V W K+ EVP+EK++ K+ K WA+D V +F F
Sbjct: 686 DPRIGVTWRKKSEVPVEKVY-KTQREKLTWALDMVGEDFEF 725
>gi|403221778|dbj|BAM39910.1| DNA topoisomerase I [Theileria orientalis strain Shintoku]
Length = 1028
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 179/408 (43%), Positives = 251/408 (61%), Gaps = 30/408 (7%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W L HNG+IF P Y+PH V + KG+ +NL P EE+ATM+A + T+Y + +NF
Sbjct: 327 WKYLEHNGMIFTPEYVPHNVPIKVKGETMNLPPHIEEIATMWAQSIGTNYETSEIYCKNF 386
Query: 463 WNDWRKLLGKNHVIQN--LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKY 520
W + K H I+ L DF I H E++++KK+ + E KA ++E K+E ++
Sbjct: 387 WGVFAGKFDKEHQIRKCKLSDVDFSLIKS-HLEEEKQKKKENKEFYKAKQQEDAKREYRF 445
Query: 521 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP-- 578
+A+VD ++EKV + ++EPPGLF+GRG HPK G LK R+ P D+ +N+ KD P+P+
Sbjct: 446 NYALVDWIREKVSSNKLEPPGLFKGRGLHPKQGLLKLRMFPKDVILNMSKDAPVPKVSNF 505
Query: 579 -IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
G WK++ HDNTVTWLA++ D IN ++KY++L+A S KG D KY KAR+LK Y
Sbjct: 506 MREGHCWKDIYHDNTVTWLAYYKDSIND-QYKYMYLSAQSKFKGFHDFLKYNKARELKSY 564
Query: 638 IHSIRAAYT------KDFVSR----DGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 687
I+ IR Y +D +S D +Q+ A YLID LALR G EKD DEADTVGC
Sbjct: 565 INKIREDYNAKMLCKRDLLSHLFTLDMYEKQLGTAVYLIDFLALRVGGEKDADEADTVGC 624
Query: 688 CTLKVGNVECIP--PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDK 745
C+L+V +++ N + DFLGKDSI+Y NTV + Y + +F KK + ++F+
Sbjct: 625 CSLRVEHIKFSEKKKNTITLDFLGKDSIRYYNTVTLHDVAYDNLAKFCNRKKPSAEIFNL 684
Query: 746 LD-----------TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
++ T KLN +LKELM GL+AKVFRTYNASITL +
Sbjct: 685 INIVDGKVMTDIQTTKLNDYLKELMDGLSAKVFRTYNASITLQNQFKR 732
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 106/171 (61%), Gaps = 13/171 (7%)
Query: 788 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT-------EKIEDLKGVLKDLRV 840
+V+ + Y AN+EVAI+CNHQR++ K H MS+L E I++L +K L
Sbjct: 859 NVSELLQFYNYANREVAILCNHQRSIPKQHETSMSKLKVQADMLKEDIQELTEYVKHLES 918
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTN-AKIEKMERD----MKTKEDLKT 895
+ K + D +G ++ L + ++ A+ A ++K ++D M+ K+ KT
Sbjct: 919 NSKEEFKFTSKV-NDVNGNPRKLLTKQGMKMDAAKNKLATLKKKQKDHTIKMRIKDSNKT 977
Query: 896 VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VALGTSKINY+DPRITVA+CK++E+PIEKIFNKSL KF WAM V +F+F
Sbjct: 978 VALGTSKINYMDPRITVAFCKKYEIPIEKIFNKSLRMKFPWAMYVRSDFKF 1028
>gi|315427867|dbj|BAJ49459.1| DNA topoisomerase I [Candidatus Caldiarchaeum subterraneum]
Length = 539
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 192/547 (35%), Positives = 308/547 (56%), Gaps = 51/547 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TLVHNGV PPPY P G+ + +G+ V L P QEE+A +A+ DT Y+Q P F++N
Sbjct: 3 KWRTLVHNGVALPPPYQPKGLSIKIRGETVKLDPLQEEMAYAWALKKDTPYVQDPVFQKN 62
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQ------KEKKKQMSSEEKKALKEEKNK 515
F D+ K + DF +Y++ + + KE +K++S+E K+ L+EE
Sbjct: 63 FLTDFLKTFNGRFQDVTINEIDFSEVYEYVERERQLKADKEYRKKISAERKR-LREE--- 118
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+ +Y WA +DG + ++ N+ VEPPG+F GRG HP G+ K R+ DIT+N+G+D P+P
Sbjct: 119 LKARYGWAEMDGKRFEIANWMVEPPGIFMGRGNHPLRGRWKPRVYEEDITLNLGEDAPVP 178
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
PG +W ++ HD+ WLA W+D + KE KYV+L+ ++ +K + D+ KY+KA L+
Sbjct: 179 ----PG-NWGQIVHDHDSMWLARWDDKLTGKE-KYVWLSDTADIKQKRDKSKYDKAEMLE 232
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++I +R K S++ R+IA+A YLID+LA+R G+EKD DEADTVG TL+V +V
Sbjct: 233 NHIDRVREKIFKGLRSKEPKMREIALACYLIDRLAMRVGDEKDPDEADTVGATTLRVEHV 292
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEV--ELP-VYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+ + ++++FDFLGKDS+++ ++++ E P V + + GKK+ D +F +++ +N
Sbjct: 293 KLL-EDRIEFDFLGKDSVRWQKSIDLRNEPPEVRQVFEELLEGKKEGDQIFQNINSRHVN 351
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVY--QRANKEVAIICNHQ 810
L +++ GLTAKVFRTY A+ + L + + + +Y + AN + A NH+
Sbjct: 352 RFLGKIVKGLTAKVFRTYIATKIVKDFLAAIPREKVTSQEKFIYYAKLANLKAAEALNHK 411
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R K + + E+++ L L++ E
Sbjct: 412 RAPPKNWEQSIQKKEERVKKLMQQLREAES-----------------------------E 442
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+K A+ ++EK E ++ ++ L TS NY+DPR+ AW + KI+ SL
Sbjct: 443 KKKARIAERLEKAELNLDLAVKVRDYNLATSLRNYIDPRVYKAWGRYTGYEWRKIYTASL 502
Query: 931 LAKFAWA 937
L KF W
Sbjct: 503 LRKFKWV 509
>gi|315426172|dbj|BAJ47816.1| DNA topoisomerase I [Candidatus Caldiarchaeum subterraneum]
gi|343485028|dbj|BAJ50682.1| DNA topoisomerase I [Candidatus Caldiarchaeum subterraneum]
Length = 539
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 192/547 (35%), Positives = 307/547 (56%), Gaps = 51/547 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TLVHNGV PPPY P G+ + +G+ V L P QEE+A +A+ DT Y+Q P F++N
Sbjct: 3 KWRTLVHNGVALPPPYQPKGLSIKIRGETVKLDPLQEEMAYAWALKKDTPYVQDPVFQKN 62
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQ------KEKKKQMSSEEKKALKEEKNK 515
F D+ K + DF +Y++ + + KE +K++S+E K+ L+EE
Sbjct: 63 FLTDFLKTFNGRFQDVTINEIDFSEVYEYVERERQLKADKEYRKKISAERKR-LREE--- 118
Query: 516 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+ +Y WA +DG + ++ N+ VEPPG+F GRG HP G+ K R+ DIT+N+G+D P+P
Sbjct: 119 LKARYGWAEMDGKRFEIANWMVEPPGIFMGRGNHPLRGRWKPRVYEEDITLNLGEDAPVP 178
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
PG +W ++ HD+ WLA W+D + KE KYV+L+ ++ +K + D+ KY+KA L+
Sbjct: 179 ----PG-NWGQIVHDHDSMWLARWDDKLTGKE-KYVWLSDTADIKQKRDKSKYDKAEMLE 232
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
+I +R K S++ R+IA+A YLID+LA+R G+EKD DEADTVG TL+V +V
Sbjct: 233 SHIDRVREKIFKGLRSKEPKMREIALACYLIDRLAMRVGDEKDPDEADTVGATTLRVEHV 292
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEV--ELP-VYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+ + ++++FDFLGKDS+++ ++++ E P V + + GKK+ D +F +++ +N
Sbjct: 293 KLL-EDRIEFDFLGKDSVRWQKSIDLRKEPPEVRQVFEELLEGKKEGDQIFQNINSRHVN 351
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVY--QRANKEVAIICNHQ 810
L +++ GLTAKVFRTY A+ + L + + + +Y + AN + A NH+
Sbjct: 352 RFLGKIVKGLTAKVFRTYIATKIVKDFLAAIPREKVTSQERFIYYAKLANLKAAEALNHK 411
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
R K + + E+++ L L++ E
Sbjct: 412 RAPPKNWEQSIQKKEERVKKLMQQLREAES-----------------------------E 442
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
+K A+ ++EK E ++ ++ L TS NY+DPR+ AW + KI+ SL
Sbjct: 443 KKKARIAERLEKAELNLDLAVKVRDYNLATSLRNYIDPRVYKAWGRYTGYEWRKIYTASL 502
Query: 931 LAKFAWA 937
L KF W
Sbjct: 503 LRKFKWV 509
>gi|340345362|ref|ZP_08668494.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520503|gb|EGP94226.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 555
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 207/557 (37%), Positives = 309/557 (55%), Gaps = 33/557 (5%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL HNG++FPP Y HG+K+ KG+ V+L QEE+A +A DT Y Q F++N
Sbjct: 2 KWKTLQHNGILFPPAYEAHGIKIKIKGENVDLNLNQEEMAYQWAKKKDTPYAQDKVFQKN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQE 517
F D+ K L + + DF Y ++K+ ++ M+ EEKKAL KE + K
Sbjct: 62 FTEDFAKTLPAKFKNISYQDIDFSHAYKIVDKEKDLREMMTKEEKKALALKRKELREKLV 121
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+KY AI+DG + V N+ EPPG+F GRG+HP G+ K R+ D+T+N+GK+ +PE
Sbjct: 122 QKYGKAIMDGKEVDVANYMAEPPGIFIGRGDHPLRGRWKPRVTAKDVTLNLGKEAKVPEG 181
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
+W ++ HDN WLA W D + K KYV+LA ++ LK D+ KYEKA KL
Sbjct: 182 -----NWGKIVHDNDSMWLAGWTDYLTEKR-KYVWLADTAGLKQDRDKAKYEKAVKLSKE 235
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I I+ KD S+D +IA YLI + A+R G+EKD DEADTVG TL+ ++
Sbjct: 236 IEKIKERIVKDMKSKDPKISRIATVCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHIN- 294
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVE---LPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
I N ++FDFLGKDS+++ TV+ E + + + KK D++F+ + + +NA+
Sbjct: 295 ITENTIEFDFLGKDSVRWQETVKAEGNDKQFQENLKKLIQNKKPKDEIFEDITSRHVNAY 354
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLN-----KGTGDGDVAVKIDVYQRANKEVAIICNH 809
++ GLTAKVFRTY A+ + L KG + K+ + AN E AI+CNH
Sbjct: 355 YSSIVSGLTAKVFRTYLATTMVKNYLKEHDNIKGKTPNE---KLYHAKLANLEAAIMCNH 411
Query: 810 QRTVSKTHSAQMSRLTEKIEDLKGVLKD--LRVDLDRAKKGKPPLMKDSDGKRKRNLAP- 866
+RT+ KT+ L +K + LK + K+ + +D KK + K +D ++K
Sbjct: 412 KRTIPKTYE---DALQKKRDTLKNIAKEQPWKKTMDALKKAEAMEAK-TDAQKKNKAKKI 467
Query: 867 ----EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
E ++++ + + + EK++ + E K LGTS NY+DPRI AW V
Sbjct: 468 KTLNEQIKKQKEKHSERAEKLQLQIDLSEKTKDYNLGTSLRNYIDPRIFKAWTNEVGVEW 527
Query: 923 EKIFNKSLLAKFAWAMD 939
EK++ +L KF W +
Sbjct: 528 EKLYTAALQKKFLWVQN 544
>gi|82594992|ref|XP_725660.1| eukaryotic DNA topoisomerase I [Plasmodium yoelii yoelii 17XNL]
gi|23480748|gb|EAA17225.1| Eukaryotic DNA topoisomerase I, DNA binding, putative [Plasmodium
yoelii yoelii]
Length = 886
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 177/427 (41%), Positives = 250/427 (58%), Gaps = 49/427 (11%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H G+IF PPY+ H + + YK ++ L P+ EE+AT + ++ TDY K KF N
Sbjct: 207 QWNYLEHRGIIFSPPYVQHNIPIFYKSIKIELNPKAEELATYWCSVIGTDYCTKDKFILN 266
Query: 462 FWNDWRKLLGKNHVIQ-------------NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
F+ + L K+++I+ N + DF I + + +E++ + EEK+
Sbjct: 267 FFKTFINNLEKDNIIRRENENKIKNGDISNFKFIDFMTIKEHLIKLREERLNKTKEEKEE 326
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K+ + ++E Y +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI
Sbjct: 327 EKKIRMEKELPYTFALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINI 386
Query: 569 GKDVPIPEC--PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
KD P P + G +W ++ HDN VTWLA++ D IN + KY FL+A S KG D
Sbjct: 387 SKDAPAPRLYDDMCGHNWGDIYHDNKVTWLAYYKDSIND-QIKYTFLSAQSKFKGYKDFL 445
Query: 627 KYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTV 685
KYE ARKLK +H IR Y +++ +Q+ A YLID LALR G EKD D+EADTV
Sbjct: 446 KYENARKLKSCVHKIRKDYQNKMKNKNIVNKQLGTAVYLIDFLALRVGGEKDIDEEADTV 505
Query: 686 GCCTLKVGNVEC-----------------------IPPN---------KLKFDFLGKDSI 713
GCC+L+V +V +P N + DFLGKDSI
Sbjct: 506 GCCSLRVEHVSFSHNVIIKNENTNDENDNKISKIPLPKNLEDILEDDCYITLDFLGKDSI 565
Query: 714 QYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNAS 773
+Y NTV+++ Y + F K +++ +FD++ +KLN +LKE+MP L+AKVFRTYNAS
Sbjct: 566 RYFNTVKIDKQAYINMIIFCKNKNKDEGVFDQITCSKLNEYLKEIMPTLSAKVFRTYNAS 625
Query: 774 ITLDGML 780
ITLD L
Sbjct: 626 ITLDQQL 632
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 12/166 (7%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP-- 850
I+ + AN+EVAI+CNHQR++ K H MS++ ++IE +++ + L KK
Sbjct: 721 INFFNNANREVAILCNHQRSIPKQHDTTMSKIKKQIEIYNEDMQEYKKYLQYLKKNNNEK 780
Query: 851 -----PLMKDSDG-----KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
+ DG K K N+ E+ ++K+ K+E +E MK ++D KT+ALGT
Sbjct: 781 EFTFVSKVVTLDGSLRPNKVKENMKEESCKKKLIALIKKVELLENQMKVRDDNKTIALGT 840
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKINY+DPRITVA+CK+ E+PIEKIFN+SL KF WAM V FRF
Sbjct: 841 SKINYMDPRITVAFCKQFEIPIEKIFNRSLRLKFPWAMFVTKNFRF 886
>gi|68071095|ref|XP_677461.1| topoisomerase I [Plasmodium berghei strain ANKA]
gi|56497590|emb|CAH96938.1| topoisomerase I, putative [Plasmodium berghei]
Length = 805
Score = 318 bits (815), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 178/427 (41%), Positives = 250/427 (58%), Gaps = 49/427 (11%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H G+IF PPY+ H + + YK ++ L P+ EE+AT + ++ TDY K KF N
Sbjct: 152 QWNYLEHRGIIFSPPYVQHNIPIFYKSVKIELNPKAEELATYWCSVIGTDYCTKEKFILN 211
Query: 462 FWNDWRKLLGKNHVIQ-------------NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
F+ + L K+++I+ N + DF I + + +E++ + EEK+
Sbjct: 212 FFKTFINNLEKDNIIRRENEHKLKNGDISNFKFIDFMTIKENLIKLREERLNKTKEEKEE 271
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K+ + ++E Y +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI
Sbjct: 272 EKKIRMEKELPYTFALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINI 331
Query: 569 GKDVPIPEC--PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
KD P P + G +W ++ HDN VTWLA++ D IN + KY FL+A S KG D
Sbjct: 332 SKDAPAPRLYDDMCGHNWGDIYHDNKVTWLAYYKDSIND-QIKYTFLSAQSKFKGYKDFL 390
Query: 627 KYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTV 685
KYE ARKLK +H IR Y S++ +Q+ A YLID LALR G EKD D+EADTV
Sbjct: 391 KYENARKLKSCVHKIRKDYQNKMKSKNIINKQLGTAVYLIDFLALRVGGEKDIDEEADTV 450
Query: 686 GCCTLKVGNVEC-----------------------IPPN---------KLKFDFLGKDSI 713
GCC+L+V +V +P N + DFLGKDSI
Sbjct: 451 GCCSLRVEHVSFSHNVIIKNENTNDENDNKISKIPLPKNLEDILEDDCYVTLDFLGKDSI 510
Query: 714 QYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNAS 773
+Y NTV+++ Y + F K +++ +FD++ +KLN +LKE+MP L+AKVFRTYNAS
Sbjct: 511 RYFNTVKIDKQAYINMIIFCKNKNKDEGVFDQITCSKLNEYLKEIMPTLSAKVFRTYNAS 570
Query: 774 ITLDGML 780
ITLD L
Sbjct: 571 ITLDQQL 577
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 12/140 (8%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK--- 849
I+ + AN+EVAI+CNHQR++ K H MS++ ++IE +++ + L KK
Sbjct: 666 INFFNNANREVAILCNHQRSIPKQHDTTMSKIKKQIEIYNEDMQEYKKYLQYLKKNNNEK 725
Query: 850 ----PPLMKDSDG-----KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
+ DG K K N+ E+ ++K+ K+E +E MK ++D KT+ALGT
Sbjct: 726 EFTFVSKVVTLDGSLRPNKVKENMKEESCKKKLIALIKKVELLENQMKVRDDNKTIALGT 785
Query: 901 SKINYLDPRITVAWCKRHEV 920
SKINY+DPRITVA+CK+ E+
Sbjct: 786 SKINYMDPRITVAFCKQFEI 805
>gi|329765703|ref|ZP_08257272.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137769|gb|EGG42036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 555
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 202/553 (36%), Positives = 304/553 (54%), Gaps = 25/553 (4%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL HNG++FPP Y HG+K+ KG+ V++ QEE+ +A DT Y Q F++N
Sbjct: 2 KWKTLQHNGILFPPAYEAHGIKIKIKGESVDIDLNQEEMIYQWAKKKDTPYAQDKVFQKN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQE 517
F +D+ K L + E DF Y ++K+ ++ M+ EEKKAL K+ + K
Sbjct: 62 FTSDFAKTLPAKFKNISYEDIDFSHAYKIVDKEKDIREMMTKEEKKALALKRKQLREKLV 121
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+KY AI+DG + V N+ EPPG+F GRG+HP G+ K RI D+T+N+GK+ +PE
Sbjct: 122 QKYGKAIMDGKEVDVANYMAEPPGIFIGRGDHPLRGRWKPRITAKDVTLNLGKEAKVPEG 181
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
+W ++ HDN WLA W D + K KYV+LA ++ LK D+ KYEKA KL
Sbjct: 182 -----NWGKIVHDNNSMWLAGWTDYLTEKR-KYVWLADTAGLKQDRDKAKYEKAVKLSKE 235
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I I+ KD S+D +IA YLI + A+R G+EKD DEADTVG TL+ ++
Sbjct: 236 IEKIKERIVKDMKSKDPKISRIATVCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHIN- 294
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVE---LPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAH 754
I + ++FDFLGKDS+++ TV+ E + + + KK D++F+ + + +NA+
Sbjct: 295 ITDDAIEFDFLGKDSVRWQETVKAEGNDKQFQENLKKLIQNKKPKDEIFEDITSRHVNAY 354
Query: 755 LKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQR--ANKEVAIICNHQRT 812
++ GLTAKVFRTY A+ + L + + +Y AN E AI+CNH+RT
Sbjct: 355 YSSIVSGLTAKVFRTYLATTMVKNYLKEHDNVKNKTPNEKLYHAKLANLEAAIMCNHKRT 414
Query: 813 VSKTHSAQMSRLTEKIEDLKGVLKD-LRVDLDRAKKGKPPLMKDSDGKRKRNLAP----- 866
+ KT+ + L K + LK + KD L + K + +D ++K
Sbjct: 415 IPKTYE---NTLENKRQTLKSISKDQLWTKTLESLKKAESMEAKTDAQKKNKAKKIKTLN 471
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E ++++ + ++EK++ + E K LGTS NY+DPRI AW V EK++
Sbjct: 472 EQIKKQKEKHKERVEKLQLQIDLSEKTKDYNLGTSLRNYIDPRIFKAWTDEVGVEWEKLY 531
Query: 927 NKSLLAKFAWAMD 939
+L KF W +
Sbjct: 532 TAALQKKFLWVQN 544
>gi|194381908|dbj|BAG64323.1| unnamed protein product [Homo sapiens]
Length = 477
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/371 (47%), Positives = 226/371 (60%), Gaps = 14/371 (3%)
Query: 552 MGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYV 611
MG LK+RI P D+ IN +D IPE P G WKEV+ DNTVTWLA W + I KY+
Sbjct: 1 MGMLKRRITPEDVVINCSRDSKIPE-PPAGHQWKEVRSDNTVTWLAAWTESIQ-NSIKYI 58
Query: 612 FLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLAL 671
L S LKG++ +K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLAL
Sbjct: 59 MLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLAL 118
Query: 672 RAGNEKDDDEA-DTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPV 725
RAGNEK+D EA DTVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PV
Sbjct: 119 RAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPV 178
Query: 726 YKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT- 784
YK + F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T
Sbjct: 179 YKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTR 238
Query: 785 GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR 844
+ +A KI Y RAN+ VAI+CNHQR T M L KI+ K +V R
Sbjct: 239 AEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQA-----KKEQVAEAR 293
Query: 845 AKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKIN 904
A+ + + G K E R + + ++ ++ KE+ K VALGTSK+N
Sbjct: 294 AELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLN 353
Query: 905 YLDPRITVAWC 915
YLDPRI++AWC
Sbjct: 354 YLDPRISIAWC 364
>gi|111306235|gb|AAI21626.1| Unknown (protein for IMAGE:7859693), partial [Xenopus (Silurana)
tropicalis]
Length = 495
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 218/326 (66%), Gaps = 12/326 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVA+ FA MLD +Y K FR
Sbjct: 132 KWKFLEHEGPVFAPPYEPLPDSVKFYYDGKPLPLSLQAEEVASFFAKMLDHEYTTKEIFR 191
Query: 460 ENFWNDWRK--LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
N++ DWRK L + VI +L CDF ++ +++ + E+KK S E+K +KEE K
Sbjct: 192 NNYFMDWRKEMTLEERMVITDLAKCDFTEMFTYYKGKMEEKKNKSKEDKLKIKEENEKLL 251
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + +D +E++GNF++EPP LFRGRG+HPK G LKKRI P DI IN KD IPE
Sbjct: 252 QEYGYCSMDHHRERIGNFKIEPPALFRGRGDHPKQGMLKKRILPEDIIINCSKDSKIPE- 310
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + KY+ L A+S LKG+ D EKYE ARKLK +
Sbjct: 311 PPPGHKWKEVRHDNTVTWLASWTENVQGS-VKYIMLNANSKLKGEKDWEKYEVARKLKHH 369
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ +IR Y ++F S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 370 VVTIRKTYRENFKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 429
Query: 697 CIPP-----NKLKFDFLGKDSIQYVN 717
P ++FDFLGKDSI+Y N
Sbjct: 430 LYPELDGDKYVVEFDFLGKDSIRYYN 455
>gi|124506131|ref|XP_001351663.1| topoisomerase I [Plasmodium falciparum 3D7]
gi|790482|emb|CAA58716.1| topoisomerase I [Plasmodium falciparum]
gi|23504591|emb|CAD51470.1| topoisomerase I [Plasmodium falciparum 3D7]
Length = 839
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 178/429 (41%), Positives = 249/429 (58%), Gaps = 51/429 (11%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H G+IF PPY+ H V + YK ++ L + EE+AT + + +DY K KF N
Sbjct: 155 QWNYLEHRGLIFSPPYVQHHVPIFYKSIKIELNAKSEELATYWCSAIGSDYCTKEKFILN 214
Query: 462 FWNDWRKLLGKNHVIQ-------------NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
F+ + L +++I+ N + DF PI D + +E+K + EEK+
Sbjct: 215 FFKTFINSLENDNIIKQENETKLKKGDISNFKFIDFMPIKDHLLKLREEKLNKTKEEKEE 274
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K+ + ++E Y +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI
Sbjct: 275 EKKMRMEKELPYTYALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINI 334
Query: 569 GKDVPIPECP--IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
KD P+P + G +W ++ HDN VTWLA++ D IN + KY FL+A S KG D
Sbjct: 335 SKDAPVPRLYDNMCGHNWGDIYHDNKVTWLAYYKDSIND-QIKYTFLSAQSKFKGYKDLM 393
Query: 627 KYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTV 685
KYE ARKLK +H IR Y +++ +Q+ A YLID LALR G EKD D+EADTV
Sbjct: 394 KYENARKLKSCVHKIREDYKNKMKNKNIIDKQLGTAVYLIDFLALRVGGEKDIDEEADTV 453
Query: 686 GCCTLKVGNVEC-------------------------IPPN---------KLKFDFLGKD 711
GCC+L+V ++ +P N + DFLGKD
Sbjct: 454 GCCSLRVEHISFAHDIPFKSVDSKEQKTNDEKVNKIPLPTNLESISSEDCYITLDFLGKD 513
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y NTV+++ Y I F K +++ +FD++ +KLN +LKE+MP L+AKVFRTYN
Sbjct: 514 SIRYFNTVKIDKQAYINIIIFCKNKNRDEGVFDQITCSKLNEYLKEIMPTLSAKVFRTYN 573
Query: 772 ASITLDGML 780
ASITLD L
Sbjct: 574 ASITLDQQL 582
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 11/165 (6%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP-- 850
I+ Y AN+EVAI+CNHQR++ K H MS++ ++IE +K+ + L KK
Sbjct: 675 INFYNNANREVAILCNHQRSIPKQHDTTMSKIKKQIELYNEDIKEYKKYLQHLKKNSDKK 734
Query: 851 ----PLMKDSDG-----KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTS 901
+ DG K K N+ E+ ++K+ K+E + MK ++D KT+ALGTS
Sbjct: 735 FIFVSKVSTLDGTLRPNKVKENMKEESCKKKLITLIKKVELLNNQMKVRDDNKTIALGTS 794
Query: 902 KINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
KINY+DPRITVA+CK+ E+PIEK+FN+SL KF WAM F F
Sbjct: 795 KINYMDPRITVAFCKKFEIPIEKVFNRSLRLKFPWAMFATKNFTF 839
>gi|161528830|ref|YP_001582656.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|160340131|gb|ABX13218.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
Length = 551
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 204/558 (36%), Positives = 309/558 (55%), Gaps = 41/558 (7%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL H G++FPP Y G+K+ KG++V+L +QEE+ +A DT Y Q F++N
Sbjct: 2 KWKTLQHKGILFPPAYEAQGIKIKIKGEKVDLNLDQEEMIYQWAKKKDTPYAQDKVFQKN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQE 517
F D+ K L + E DF Y ++K+ K+ M+ EEKKA+ KE + + +
Sbjct: 62 FTADFAKTLDSKFKKISYEDIDFSDAYKLVDKEKDLKEMMTKEEKKAIAAKRKELREELK 121
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
KY A++DG + +VGN+ EPPG+F GRGEHP G+ K R+ D+T+N+GK+ +PE
Sbjct: 122 SKYGVAVMDGKEVEVGNYMAEPPGIFIGRGEHPLRGRWKPRVTAKDVTLNLGKEAKVPEG 181
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
W ++ HD WLA W D + K KYV+L+ SS LK D+EKYEKA KL+
Sbjct: 182 -----KWGKIIHDKDSMWLASWMDFLTQKR-KYVWLSDSSDLKQGRDKEKYEKAVKLEKE 235
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I I+ A KD +D + +A A YLI K A+R G+EKD+DEADTVG TL+ +++
Sbjct: 236 IEKIKKAMVKDM--KDSKKNNVATACYLIYKTAMRVGDEKDEDEADTVGATTLRKEHIK- 292
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIG---QFQTG-------KKQNDDLFDKLD 747
I + ++FDFLGKDS+++ T++V +G QFQ KK ++++F +
Sbjct: 293 ITSDTIEFDFLGKDSVRWQETLKV-------VGDDKQFQENLKKLIEKKKPSEEIFHDIT 345
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN-----KGTGDGDVAVKIDVYQRANKE 802
+ +N +L ++ G+TAKVFRTY A+ + L KG D + K+ + AN E
Sbjct: 346 SRDVNKYLSGIVKGVTAKVFRTYQATTVVKNYLVNHDNIKGKSDNE---KLYHAKLANLE 402
Query: 803 VAIICNHQRTVSKT--HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
AI+CNH+RT+ KT S Q + T K + + + + L + + +P K
Sbjct: 403 AAIMCNHKRTIPKTFEQSLQKKKDTLKKREREKAWEKTQQTLKKVESSEPKTDTQKKNKE 462
Query: 861 KR-NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
KR E ++++ + +IEK++ + E + LGTS NY+DPR+ AW
Sbjct: 463 KRIKTLNEQIKKQKQKHKERIEKLKLQVDLSEKTRDYNLGTSLRNYIDPRVFKAWTDEVG 522
Query: 920 VPIEKIFNKSLLAKFAWA 937
EK++ +L KF W
Sbjct: 523 AEWEKLYTSALQKKFLWV 540
>gi|407462983|ref|YP_006774300.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|407046605|gb|AFS81358.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 553
Score = 308 bits (790), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 210/555 (37%), Positives = 307/555 (55%), Gaps = 33/555 (5%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL HNG++FPP Y G+K+ KG+++NL+ EQEE+ +A DT Y Q F++N
Sbjct: 2 KWKTLQHNGILFPPAYEAQGIKIKIKGEKINLSLEQEEMVYQWAKKKDTPYAQDKVFQKN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQE 517
F D+ K L + E DF Y ++K+ K+ M+ EEKKA+ KE + + +
Sbjct: 62 FTADFAKTLDSKFKKISYEDIDFSDAYKLVDKEKDLKEMMTKEEKKAIAAKRKELREELK 121
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
KY AI+DG+K +VGN+ EPPG+F GRGEHP G+ K R+ P D+T+N+GK+ IPE
Sbjct: 122 AKYGVAIMDGIKVEVGNYMAEPPGIFIGRGEHPLRGRWKPRVTPKDVTLNMGKEAKIPEG 181
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
W ++ HD WLA W D + K KYV+LA ++ LK D+EKYEKA KL
Sbjct: 182 -----KWGKIIHDKDSMWLASWMDFLTQKR-KYVWLADTAGLKQDRDKEKYEKAVKLAKE 235
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I I+ KD S D +IA A YLI + A+R G+EKD +EADTVG TL+ +++
Sbjct: 236 IEKIKDRIVKDMKSADPKISRIATACYLIYRTAMRVGDEKDPEEADTVGATTLRKEHIK- 294
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-------KKQNDDLFDKLDTAK 750
I + ++FDFLGKDS+++ TV+ E QFQ KK D++F + +
Sbjct: 295 ITSDAIEFDFLGKDSVRWQETVKAE----GQDKQFQENLKKLVEKKKPKDEIFHDITSRH 350
Query: 751 LNAHLKELMPGLTAKVFRTYNASITLDGMLN-----KGTGDGDVAVKIDVYQRANKEVAI 805
+NA+ ++ GLTAKVFRTY A+ + L KG D + K+ + AN E AI
Sbjct: 351 VNAYYSSIVKGLTAKVFRTYLATTVVKDYLKEHDNMKGKSDNE---KLYHAKLANLEAAI 407
Query: 806 ICNHQRTVSKT--HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKR- 862
+CNH+RT+ KT S Q + T K + + + + L + + +P K KR
Sbjct: 408 MCNHKRTIPKTFEQSLQKKKDTLKNREKEKAWEKTQQTLKKVESTEPKTETQKKNKAKRI 467
Query: 863 NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
E ++++ + +IEK++ + E + LGTS NY+DPR+ AW
Sbjct: 468 KTLNEQIKKQKQKHKERIEKLKLQVDLSERTRDYNLGTSLRNYIDPRVFKAWTDEVGAEW 527
Query: 923 EKIFNKSLLAKFAWA 937
EK++ +L KF W
Sbjct: 528 EKLYTAALQKKFLWV 542
>gi|262089250|gb|ACY24472.1| DNA topoisomerase IB [uncultured crenarchaeote 29d5]
Length = 570
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 193/566 (34%), Positives = 320/566 (56%), Gaps = 57/566 (10%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KWT L HNGV FPP Y+ G+ + +G+ + L EQEE+ +A DT Y++ F+ N
Sbjct: 12 KWTELEHNGVAFPPEYVQRGINIKIRGEILFLNREQEEIIYAWAKKKDTHYVKDAVFQSN 71
Query: 462 FWNDWRKLL-GKNHVIQNLEGCDFKPIYDW-------HQEQKEKKKQMSSEEKKALKEEK 513
F +D +KL + ++Q ++ D ++ + +K + K + EEK+ + + K
Sbjct: 72 FIDDLKKLFPHRFKLLQKIDEIDMTEAFNLVDKELKIKENEKLRIKSLPREEKRRISQGK 131
Query: 514 NKQEEK----YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
++EK Y A ++G++ +V N+ VEPPG+F GRG HP G+ K R+ P+D+T+N+G
Sbjct: 132 KLEKEKLKSIYGKAKINGIEVEVANWLVEPPGIFMGRGLHPLRGRWKPRVTPNDVTLNLG 191
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
++ +PE P WK + HD+ TWLA W + + K KYV+L SS L+ +D+ KY+
Sbjct: 192 ENASVPEGP-----WKAIVHDHYSTWLASWIEILTGKR-KYVWLHDSSYLRQDNDKAKYD 245
Query: 630 KARKLKDYIHSI-RAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
A+KL++YI +I + + ++D T+R++A YLI KLA+R G+EKD DEADT+G
Sbjct: 246 IAKKLENYIRAIEKEIINQMLYAKDTTKRKVATVCYLIYKLAMRVGDEKDPDEADTIGAS 305
Query: 689 TLKVGNVECIPPN---KLKFDFLGKDSIQYVNTVEVEL----PVYKAIGQFQTGKKQNDD 741
TL+V +++ N +++F+FLGKDS+ + T+E+ +Y+ + F GK Q+D+
Sbjct: 306 TLRVEHLKFPKINDKVQIEFNFLGKDSVPWQKTLEISSADTKALYENLLFFMKGKGQSDE 365
Query: 742 LFDKLDTAKLNAHLKEL----MPGLTAKVFRTYNASITLDGMLN----KGTGDGDVAVKI 793
+F+ + + K+N L+ + +P LTAKVFRTY A+ + L+ K + + KI
Sbjct: 366 IFEDITSTKVNKFLRSIDKDNLPNLTAKVFRTYIATAIVKKHLSSPVLKVSKNESEFKKI 425
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSA---QMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP 850
V + AN E AI CNH++ + + A + + + + K +K L+V+L + KK K
Sbjct: 426 YVAKIANLEAAITCNHKKGIDPKNPASKKSWEKFEQSLANKKEKIKQLKVEL-KEKKWKT 484
Query: 851 PLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRI 910
L K +R IEK+E ++ +++ + LGTS NY+DPR+
Sbjct: 485 ELQKLKKEQR-------------------IEKLEFQIRLQQETRDYNLGTSLRNYIDPRV 525
Query: 911 TVAWCKRHEVPIEKIFNKSLLAKFAW 936
+WC+ ++ KI+ +L KF W
Sbjct: 526 FKSWCEFVDLDWTKIYTSTLQRKFKW 551
>gi|167042738|gb|ABZ07458.1| putative eukaryotic DNA topoisomerase I, catalytic core [uncultured
marine crenarchaeote HF4000_ANIW133O4]
Length = 563
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 193/563 (34%), Positives = 308/563 (54%), Gaps = 42/563 (7%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDT-------DYMQ 454
KW TL HNG++FPP + G+K+ K + V L QEE+ ++ D Y++
Sbjct: 2 KWKTLQHNGILFPPDFESKGIKIKIKRENVALNLLQEEMIYQWSKKKDAPKPGATEKYIE 61
Query: 455 KPKFRENFWNDWRKLLGKNHVIQNLE--GCDFKPIYDWHQEQKEKKKQMSSEEKKAL--- 509
P F++NF +D+ K N +NL+ DF + ++KE+K+ ++ E+KKAL
Sbjct: 62 DPIFQKNFVSDFAKTF--NGKFKNLQYSDIDFSLAHQLVDKEKEEKELLTKEDKKALAIK 119
Query: 510 -KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
KE + + + KY I+DG + ++GN+ EPPG+F GRGEHP G+ K R+ D+T+N+
Sbjct: 120 RKEIREEMKAKYGNGIIDGKEVEIGNYMAEPPGIFMGRGEHPMRGRYKLRVTAKDVTLNL 179
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
GK+ IPE W ++ HD W+A W D + K KYV+LA ++ +K + D+ KY
Sbjct: 180 GKEAKIPEA-----KWGKIVHDRNSMWIASWMDILTQKR-KYVWLADTAGIKQEMDQAKY 233
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
+KA+ L I +++A KD S + ++IA A YLI + ++R G+EKD DEADTVG
Sbjct: 234 DKAKNLSKEIENVKAQIIKDMQSNEQKNKRIATACYLIYRTSMRVGDEKDPDEADTVGAT 293
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVE---LPVYKAIGQFQTGKKQNDDLFDK 745
TL+ +++ + N ++FDFLGKD +++ T+ E Y + +F KK++ ++FD
Sbjct: 294 TLRKEHIK-LSENAIEFDFLGKDGVRWRETIPAEGHDKQFYDNLKEFIANKKESQEIFDG 352
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV-----YQRAN 800
+ + +NA+ ++ GL+AKVFRTY AS + L D+ K D+ + AN
Sbjct: 353 IASRHVNAYYSTIVKGLSAKVFRTYLASSVVSKNLR---AHDDIKSKSDMKKLFHAKSAN 409
Query: 801 KEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGV--LKDLRVDLDRAKKGKPPLMKDSDG 858
+ AI+CNH+RT+ K A + + + +E+++ K V L KK + + K
Sbjct: 410 LDAAIMCNHKRTIPKNFEASLQKKKDTLENVEKTKPWKKSEVLL---KKAQSKITKTEKQ 466
Query: 859 KRKRNLAPEALERKMAQTNAK----IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAW 914
K +N + ++ + + K IEK+E + E + LGTS NY+DPRI AW
Sbjct: 467 KEMQNERIKKIKTMIKKRKTKHAERIEKLELQINLTEKTRDYNLGTSLRNYIDPRIFKAW 526
Query: 915 CKRHEVPIEKIFNKSLLAKFAWA 937
V EK++ L KF W
Sbjct: 527 TDEVGVEWEKLYTSVLQKKFLWV 549
>gi|167044902|gb|ABZ09569.1| putative eukaryotic DNA topoisomerase I, catalytic core [uncultured
marine crenarchaeote HF4000_APKG8D22]
Length = 563
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 191/561 (34%), Positives = 306/561 (54%), Gaps = 38/561 (6%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDT-------DYMQ 454
KW TL HNG++FPP + G+K+ K + V L QEE+ ++ D Y++
Sbjct: 2 KWKTLQHNGILFPPDFESKGIKIKIKRENVALNLLQEEMIYQWSKKKDAPKPGATEKYIE 61
Query: 455 KPKFRENFWNDWRKLLGKNHVIQNLE--GCDFKPIYDWHQEQKEKKKQMSSEEKKAL--- 509
F++NF +D+ K N +NL+ DF Y ++KE+K+ ++ E+KKAL
Sbjct: 62 DSIFQKNFVSDFAKTF--NGKFKNLQYSDIDFSLAYQLVDKEKEEKELLTKEDKKALAIK 119
Query: 510 -KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
KE + + + KY I+DG + ++GN+ EPPG+F GRGEHP G+ K R+ D+T+N+
Sbjct: 120 RKEIREEMKAKYGNGIIDGKEVEIGNYMAEPPGIFMGRGEHPMRGRYKLRVTAKDVTLNL 179
Query: 569 GKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKY 628
GK+ IPE W ++ HD W+A W D + K KYV+LA ++ +K + D+ KY
Sbjct: 180 GKEAKIPEAK-----WGKIVHDRNSMWIASWMDILTQKR-KYVWLADTAGIKQEMDQAKY 233
Query: 629 EKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
+KA+ L I +++A KD S + ++IA A YLI + ++R G+EKD DEADTVG
Sbjct: 234 DKAKNLSKEIENVKAQIIKDMQSNEQKNKRIATACYLIYRTSMRVGDEKDPDEADTVGAT 293
Query: 689 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVE---LPVYKAIGQFQTGKKQNDDLFDK 745
TL+ +++ + N ++FDFLGKD +++ T+ E Y + +F KK++ ++FD
Sbjct: 294 TLRKEHIK-LSENAIEFDFLGKDGVRWRETIPAEGHDKQFYDNLKEFIANKKESQEIFDG 352
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDV-----YQRAN 800
+ + +NA+ ++ GL+AKVFRTY AS + L D+ K D+ + AN
Sbjct: 353 IASRHVNAYYSTIVKGLSAKVFRTYLASSVVSKNLR---AHDDIKSKSDMKKLFHAKSAN 409
Query: 801 KEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
+ AI+CNH+RT+ K A + + + +E+++ K + KK + + K K
Sbjct: 410 LDAAIMCNHKRTIPKNFEASLQKKKDTLENVEKT-KPWKKSAVLLKKAQSKITKTEKQKE 468
Query: 861 KRNLAPEALERKMAQTNAK----IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
+N + ++ + + K IEK+E + E + LGTS NY+DPRI AW
Sbjct: 469 MQNERIKKIKTMIKKRKTKHAERIEKLELQINLTEKTRDYNLGTSLRNYIDPRIFKAWTD 528
Query: 917 RHEVPIEKIFNKSLLAKFAWA 937
V EK++ L KF W
Sbjct: 529 EVGVEWEKLYTSVLQKKFLWV 549
>gi|262089332|gb|ACY24552.1| DNA topoisomerase IB [uncultured crenarchaeote 76h13]
Length = 570
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 191/563 (33%), Positives = 314/563 (55%), Gaps = 51/563 (9%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KWT L HNGV FPP Y+ G+ + KG+ + L EQEE+ +A DT Y++ F+ N
Sbjct: 12 KWTELEHNGVAFPPEYVQRGINIKIKGEILFLNREQEEIIYSWAKKKDTHYVKDSVFQTN 71
Query: 462 FWNDWRKLL-GKNHVIQNLEGCDFKPIYDW-------HQEQKEKKKQMSSEEKKALKEEK 513
F D +KLL K +Q ++ D ++ +++K + K + EEK+ + +EK
Sbjct: 72 FIADLKKLLPAKFRTVQRIDEIDMTEAFNLVDKESKIKEDEKLRIKSLPREEKRRISQEK 131
Query: 514 NKQEEK----YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
++EK Y A ++G++ V N+ VEPPG+F GRG HP G+ K R+ P+D+T+N+G
Sbjct: 132 KLEKEKMKSIYGKAKINGIEVDVANWLVEPPGIFMGRGLHPLRGRWKPRVTPNDVTLNLG 191
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
++ +PE P WK + HD+ TWLA W + + K KYV+L SS L+ +D+ KY+
Sbjct: 192 ENASVPEGP-----WKMIVHDHYSTWLASWIEVLTGKR-KYVWLHDSSFLRQDNDKAKYD 245
Query: 630 KARKLKDYIHSI-RAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 688
A+KL++YI +I + + +++ T+R++A YLI KLA+R G+EKD DEADT+G
Sbjct: 246 TAKKLENYIRAIEKEIINQMLYAKETTKRKVATVCYLIYKLAMRVGDEKDPDEADTIGAS 305
Query: 689 TLKVGNVECIPPN---KLKFDFLGKDSIQYVNTVEVEL----PVYKAIGQFQTGKKQNDD 741
TL+V +++ N +++F+FLGKDS+ + T+E+ +Y+ + F GK Q D+
Sbjct: 306 TLRVEHLKFPKVNDNVQIEFNFLGKDSVPWQKTLEISSADTKALYENLVFFMKGKSQTDE 365
Query: 742 LFDKLDTAKLNAHLKEL----MPGLTAKVFRTYNASITLDGMLN----KGTGDGDVAVKI 793
+F+ + +AK+N L+ + +P LTAKVFRTY A+ + L+ K + + KI
Sbjct: 366 IFEDITSAKVNKFLRSIDKDNLPNLTAKVFRTYIATAIVKKHLSAPVLKVSKNESEFKKI 425
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
V + AN E AI CNH++ + + A + E + L + + + K
Sbjct: 426 YVAKIANLEAAITCNHKKGIDPKNPAS----KKSWEKFEQSLANKKEKIKELKLELKEKK 481
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
+D ++ + +IEK+E ++ ++D + LGTS NY+DPR+ +
Sbjct: 482 WKTDLQKMKK-------------EQRIEKLEFQIRLQQDTRDYNLGTSLRNYIDPRVFKS 528
Query: 914 WCKRHEVPIEKIFNKSLLAKFAW 936
WC+ ++ KI+ +L KF W
Sbjct: 529 WCEYVDLDWTKIYTSTLQRKFKW 551
>gi|402696584|gb|AFQ91784.1| DNA topoisomerase 1, partial [Protanilla sp. JP01]
Length = 293
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 201/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKSAFNSNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++++ ++ E++K M+ +EK +KE+ + +++Y + ++DG KEK
Sbjct: 61 ERARIHDLSKCNFKEMHEYFLQKSEERKAMTKDEKHKIKEKNEEIQKEYGFCVIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVIPEDVLINCSKDSNIPKPPT-GHKWKEIRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYKEDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHL 282
>gi|402696588|gb|AFQ91786.1| DNA topoisomerase 1, partial [Leptanilla sp. TH01]
Length = 293
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 201/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--G 471
PY LP VK Y GKE+ L+ + EEVAT +A MLD DY K F NF++DWR+++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDS 60
Query: 472 KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
+ I +L C+F ++ + ++ E++K M+ E+K+ +KE+ + +++Y + I+DG KEK
Sbjct: 61 ERAKITDLSKCNFNEMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCIIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P+D+ IN KD +P+ P PG W+EV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPADVLINCSKDSNMPKAP-PGHKWREVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHL 282
>gi|320170030|gb|EFW46929.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 184/567 (32%), Positives = 297/567 (52%), Gaps = 40/567 (7%)
Query: 400 QKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQ-EEVATMFAVMLDTDYMQKP 456
+ +WTT VHNG +FP PY LP V Y G+ V + P+ EE +FA L++ + P
Sbjct: 168 EARWTTFVHNGPLFPEPYTRLPVNVTFFYDGQPVRMLPDVVEEAVCLFAARLNSPLIVNP 227
Query: 457 KFRENFWNDWRKLLGKN-HVIQNLEG-------------CDFKPIYDWHQEQKEKKKQMS 502
KFR NF D KL+ ++ H + + G CDF I +EKK+
Sbjct: 228 KFRLNFIADLNKLVDQHRHELASPVGVGLVLPKVLEYDKCDFTKIAAHLMRLREKKRSAL 287
Query: 503 SEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPS 562
+ ++KA K E+ K+ +VDGV +K G + +EPP +F GRG P G +K R+ P+
Sbjct: 288 TAKEKAKKAER---ALKHGVVVVDGVPQKFGPYVMEPPSIFLGRGNSPLTGHIKPRLSPA 344
Query: 563 DITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQ 622
D+T+N+ + P+P P+PG +WK + T W A W I+ K + + S+ L +
Sbjct: 345 DVTLNLSEGAPVPPSPVPGTNWKAIVSRPTALWSATWTCKISGLT-KAIVPSRSAKLIQE 403
Query: 623 SDREKYEKARKLKDYIHSIRAAYTKDF-VSRDGT-RRQIAVATYLIDKLALRAGNEKDDD 680
+ K+++ RKL ++I IR K ++++ T + Q A+ YL+D+LALR G K D
Sbjct: 404 ATAAKFDQVRKLGEHISEIREQVFKCMRLAKEPTVQAQTALGVYLLDQLALRPGTSKIDT 463
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-N 739
++ + G TL +V+ + P + FDF GKD +QY N+VEV+ +K K
Sbjct: 464 DS-SYGLFTLLPKHVKLVEPRTISFDFPGKDMVQYTNSVEVDPSAFKVFKMMMAAAKDPK 522
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
+FD +++ +K +A+ FRTY+AS + L +V K + RA
Sbjct: 523 TPVFDSSVGTRVDTFVKSFDKNFSARSFRTYSASSLFERSLPDCRKVSEVHKKA-AFDRA 581
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N VA +CNHQR + + ++ ++ K L ++ +L K++
Sbjct: 582 NVAVARLCNHQRITTTNPADDRKKMASAMKAAKASLTKIKDEL-----------KETPKT 630
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
K+ AL + + +I ++E +TKED + ++L TSK+NY+DPRI+VAWCKR++
Sbjct: 631 TKKY---SALVERKKKAEDRIVQLEVKQETKEDSRALSLNTSKVNYIDPRISVAWCKRNK 687
Query: 920 VPIEKIFNKSLLAKFAWAMDVDPEFRF 946
+ + KIF + L +F+WA+D +F F
Sbjct: 688 LDLNKIFPPTTLDRFSWALDTKDDFVF 714
>gi|402696586|gb|AFQ91785.1| DNA topoisomerase 1, partial [Leptanilla sp. ZA01]
Length = 293
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/280 (51%), Positives = 197/280 (70%), Gaps = 4/280 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHV 475
LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ +
Sbjct: 5 LPSTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNSNFFHDWREVMTDSERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ E+K+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 IVDLSKCNFKEMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G W+E++HD+ VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPTGHKWREIRHDSNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|432864217|ref|XP_004070231.1| PREDICTED: DNA topoisomerase 1-like [Oryzias latipes]
Length = 597
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/340 (50%), Positives = 222/340 (65%), Gaps = 19/340 (5%)
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
++G+ D EKYE ARKLK + IR Y D SR+ RQ AVA Y IDKLALRAGNEK+
Sbjct: 265 IQGEKDWEKYEIARKLKSCVDDIRNTYLGDLKSREMVTRQRAVALYFIDKLALRAGNEKE 324
Query: 679 DDE-ADTVGCCTLKVGNV---ECIPPNK--LKFDFLGKDSIQYVNTVEVELPVYKAIGQF 732
+ E ADTVGCC+L+V ++ E + NK ++FDFLGKDSI+Y N V V V+K++ +F
Sbjct: 325 EGETADTVGCCSLRVEHITLHEQLDGNKCVVEFDFLGKDSIRYYNKVPVISKVFKSLKRF 384
Query: 733 QTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAV 791
K+ D+LFD+L+T+ LN HL LMPGLTAKVFRTYNASITL L + + D VA
Sbjct: 385 MDNKEPGDELFDRLNTSLLNKHLSSLMPGLTAKVFRTYNASITLQQQLKELSNKSDNVAE 444
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
K+ Y RAN+ VAI+CNHQR KT M+ L KI+ K L + +L +AK
Sbjct: 445 KLLSYNRANRAVAILCNHQRAPPKTFEQSMANLQAKIDARKEQLALAKSELKQAK----- 499
Query: 852 LMKDSDGKRKRNLAPEAL-ERKMA---QTNAKIEKMERDMKTKEDLKTVALGTSKINYLD 907
K++ K ++ +AL ERK A + + KME +E+ K +ALGTSK+NYLD
Sbjct: 500 --KEAKDKGNSDIKLQALVERKKAAVKRCEEHLLKMEVQATDREENKQIALGTSKLNYLD 557
Query: 908 PRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
PRI+VAWCK EVPIEKI+NK+ KFAWA+D+ + +F F
Sbjct: 558 PRISVAWCKNMEVPIEKIYNKTQREKFAWAIDMTEDDFEF 597
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 81/149 (54%), Gaps = 9/149 (6%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L HNG FPP Y LP V Y GK++ L+ EEVA FA MLD +Y K FR
Sbjct: 155 KWKSLEHNGPYFPPEYQPLPDDVHFYYDGKKMKLSVAAEEVALFFAQMLDHEYTTKKVFR 214
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
ENF+ DWRK + + VIQ+L CDF I+ H+ + E +K M+ EEK+ E K
Sbjct: 215 ENFFKDWRKEMTPEERSVIQDLNKCDFGEIHAMHKTKVEARKNMTKEEKQIQGE---KDW 271
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGR 546
EKY I +K V + R G + R
Sbjct: 272 EKY--EIARKLKSCVDDIRNTYLGDLKSR 298
>gi|118575388|ref|YP_875131.1| DNA topoisomerase IB [Cenarchaeum symbiosum A]
gi|118193909|gb|ABK76827.1| DNA topoisomerase IB [Cenarchaeum symbiosum A]
Length = 519
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 197/546 (36%), Positives = 290/546 (53%), Gaps = 50/546 (9%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W TL H+G+ FPP + G K+ KGK+VNLTP QEE+A +A DT Y Q F++NF
Sbjct: 3 WKTLQHSGIHFPPEHEVKGFKIKVKGKQVNLTPLQEEMAYQWAKKKDTPYAQDKVFQKNF 62
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQEE 518
D+ K LG + ++L DF Y +K+KK M+ EEKK + KE + +
Sbjct: 63 ARDFAKELGIKLLYKDL---DFSEAYRLVDMEKDKKDMMTKEEKKEIAAKRKEIREGLKA 119
Query: 519 KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECP 578
KY A++DG + ++ ++ EPPG+F GRG+HP GK K+RI P D+ +N+G P
Sbjct: 120 KYGIAVMDGKEVEIASYMAEPPGIFIGRGKHPLRGKWKRRIGPQDVVLNMGTKAKAP--- 176
Query: 579 IPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYI 638
PG+ WK++ H+ W+A W D + K+ KYV+LA ++ LK + DR KYEKA L I
Sbjct: 177 -PGK-WKKIVHEKDGIWIAKWTDNLVKKD-KYVWLADTAGLKQERDRSKYEKAVALSKKI 233
Query: 639 HSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECI 698
I A KD S+D +IA A YLI + A+R G+EKD DEADTVG TL+ ++ I
Sbjct: 234 GEIEAKIVKDMKSKDPKISKIATACYLIYRTAMRVGDEKDKDEADTVGATTLRKEHIR-I 292
Query: 699 PPNKLKFDFLGKDSIQYVNTVEV---ELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHL 755
++FDFLGKDSI++ ++V + + + K D++F + ++ +N +
Sbjct: 293 SDGVIEFDFLGKDSIRWNEKLKVTGDDEQFSRNLQGLVKSIKPKDEIFKDIRSSDVNRYY 352
Query: 756 KELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVY--QRANKEVAIICNHQRTV 813
++ G+TAKVFRTY AS + L K + +Y + AN E AI+CNH+RTV
Sbjct: 353 SGIVKGVTAKVFRTYLASKKVSEYLRKNDKIRSKSAFFKLYHAKSANLEAAIMCNHKRTV 412
Query: 814 SKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKM 873
KT + + E ++ KG P K + K++R
Sbjct: 413 PKTFKKALEKKKETLKKAKGAT--------------PKTDKQKERKKER----------- 447
Query: 874 AQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAK 933
IEK+ +K ++ + +GTS NY+DPRI AW EK++ +L K
Sbjct: 448 ------IEKIGLQIKLAQNTRDYNVGTSLRNYIDPRIFKAWTDEVGAEWEKLYTTALQRK 501
Query: 934 FAWAMD 939
F W D
Sbjct: 502 FLWVRD 507
>gi|440800983|gb|ELR22008.1| eukaryotic dna topoisomerase, putative [Acanthamoeba castellanii
str. Neff]
Length = 445
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/447 (37%), Positives = 249/447 (55%), Gaps = 44/447 (9%)
Query: 402 KWTTLVH-NGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRE 460
+W TL G FPP Y PHGVK++Y G+ V+LTP+QEEVA+ +A +LDT + F +
Sbjct: 9 RWQTLEWPAGPKFPPAYKPHGVKLIYDGEPVDLTPDQEEVASFYASLLDTVNVHNEVFNK 68
Query: 461 NFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKY 520
NF+ D+ + D P EE++ALK E+ + +++
Sbjct: 69 NFFRDFPR--------------DAMP------------GPRRPEEREALKAERESERQRH 102
Query: 521 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE---- 576
A+VDG V N+++EPPGLFRGRG+HP+ G+LK R+ P IT+N+G+ V P+
Sbjct: 103 GVALVDGEPAPVANWQIEPPGLFRGRGQHPQAGRLKPRVMPESITLNLGRGVDPPQPGGG 162
Query: 577 -CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
+ G W V HD +VTWLA W D + + K++F++ +++ +RE++E AR+L
Sbjct: 163 DGAMAGREWGAVVHDQSVTWLARWRDHVTGLD-KFIFMSPTAASSQTRERERFEAARQLN 221
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEK-DDDEADTVGCCTLKVGN 694
+I +IR AY +D + D R Q A A +LID LR G+EK D+ EA +VGCC+L+V +
Sbjct: 222 AHIEAIREAYMEDLNADDERRWQCATALWLIDHAGLRVGSEKADESEASSVGCCSLRVEH 281
Query: 695 VECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNA 753
V P+ FDFLGKDS++Y N +EV V+ + + G K+ DD+FD+L +
Sbjct: 282 VRPRAPS--YFDFLGKDSLRYRNAIEVPPLVFARLQRLVVGDKRSTDDVFDRLSATDVTT 339
Query: 754 HLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQR 811
L ELMPGLTA R +N S L L++ G ++V K+ Y AN+ VAI +
Sbjct: 340 RLTELMPGLTASRLRIFNNSSLLQHELSRPLPPGTLSVAEKLLHYNEANRRVAIQTHRAA 399
Query: 812 TVSKTHSAQM-----SRLTEKIEDLKG 833
+ M R+T IE + G
Sbjct: 400 QGGLSTGGMMMHYMDPRITVPIEKIWG 426
>gi|380699325|gb|AFD94955.1| topoisomerase I, partial [Stenamma sp. mgb05]
Length = 293
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF++DWR + ++
Sbjct: 1 PYEPLPPTVKFYYNGEEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRNNMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M++EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVSKSEERKAMTTEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P+ G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPV-GHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWRENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGN+KD D+ADTVGCC+L+V ++
Sbjct: 239 KEMCIRQRAVALYFIDKLALRAGNKKDKDQADTVGCCSLRVEHI 282
>gi|402696600|gb|AFQ91792.1| DNA topoisomerase 1, partial [Leptanilla sp. GR03]
gi|402696602|gb|AFQ91793.1| DNA topoisomerase 1, partial [Leptanilla sp. GR03]
gi|402696604|gb|AFQ91794.1| DNA topoisomerase 1, partial [Leptanilla sp. GR03]
Length = 293
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 142/280 (50%), Positives = 197/280 (70%), Gaps = 4/280 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHV 475
LP VK Y GKE+ L+ + EEVAT +A MLD DY K F NF++DWR+++ +
Sbjct: 5 LPSTVKFYYNGKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDSERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ E+K+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 IVDLSKCNFKEMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G W+E++HD+ VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPTGHKWREIRHDSNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHL 282
>gi|380699271|gb|AFD94928.1| topoisomerase I, partial [Aphaenogaster swammerdami]
Length = 293
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 203/284 (71%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ + EE+AT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEDTEEIATFYARMLDHDYTTKPAFNSNFFHDWREMMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + I+DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCIIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K+ IP+ P PG WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDVLINCSKNSNIPK-PPPGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699281|gb|AFD94933.1| topoisomerase I, partial [Solenopsis xyloni]
Length = 293
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 202/284 (71%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPSSVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK + + ++ E++K M+ EEKK +KE+ + +++Y + I+DG KEK
Sbjct: 61 ERAKITDLFKCNFKEMQAYFVQKSEERKAMTKEEKKKIKEKNEEIQKEYGFCIIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN +D IP+ P PG WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSRDSNIPK-PPPGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
TVTWLA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 TVTWLASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|402696590|gb|AFQ91787.1| DNA topoisomerase 1, partial [Leptanilla sp. GR01]
gi|402696592|gb|AFQ91788.1| DNA topoisomerase 1, partial [Leptanilla sp. GR01]
Length = 293
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--G 471
PY LP VK Y GKE+ L+ + EEVAT +A MLD DY K F NF++DWR+++
Sbjct: 1 PYEPLPSTVKFHYNGKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDS 60
Query: 472 KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
+ I +L C+FK ++ + ++ E++K M+ E+K+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIVDLSKCNFKEMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G W+E++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWREIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHL 282
>gi|380699363|gb|AFD94974.1| topoisomerase I, partial [Stenamma sardoum]
Length = 293
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY KP F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKPAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLLKSEERKAMTREEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|402696594|gb|AFQ91789.1| DNA topoisomerase 1, partial [Leptanilla sp. GR02]
gi|402696596|gb|AFQ91790.1| DNA topoisomerase 1, partial [Leptanilla sp. GR02]
gi|402696598|gb|AFQ91791.1| DNA topoisomerase 1, partial [Leptanilla sp. GR02]
Length = 293
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/280 (49%), Positives = 196/280 (70%), Gaps = 4/280 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHV 475
LP V+ Y GKE+ L+ + EEVAT +A MLD DY K F NF++DWR+++ +
Sbjct: 5 LPSTVRFYYNGKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDSERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K ++ E+K+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 IVDLSKCNFKEMHVYFLQKSEERKALTKEDKQKIKEKNEEIQKEYGFCKIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLK+R+ P D+ IN KD IP+ P G W+E++HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKRRVLPEDVLINCSKDSNIPK-PPTGHKWREIRHDTNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KY+ L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHL 282
>gi|380699279|gb|AFD94932.1| topoisomerase I, partial [Pogonomyrmex subdentatus]
Length = 293
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 200/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ + EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSQDTEEVATFYARMLDHDYTTKATFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P PG WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPPGHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + + + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENVQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699267|gb|AFD94926.1| topoisomerase I, partial [Aphaenogaster albisetosa]
Length = 293
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/280 (52%), Positives = 197/280 (70%), Gaps = 4/280 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP VK Y GKE+ L+ EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 5 LPPTVKFYYNGKEMKLSQNTEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + I+DG KEK+GNF
Sbjct: 65 ITDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCIIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P PG WKEV+HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKDSNIPK-PPPGHKWKEVRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699277|gb|AFD94931.1| topoisomerase I, partial [Myrmica striolagaster]
Length = 293
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 199/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ LT + EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPSVKFYYNGKEMKLTQDTEEVATFYARMLDHDYTTKPAFNSNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKISDLSKCNFKEMHVYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKVSNVPK-PPAGHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699275|gb|AFD94930.1| topoisomerase I, partial [Messor denticornis]
Length = 293
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ + EE+AT +A MLD DY K F NF+ DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFTDWREMMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLMKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699269|gb|AFD94927.1| topoisomerase I, partial [Aphaenogaster occidentalis]
Length = 293
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ + EE+AT +A MLD DY K F NF+ DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFTDWREMMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699273|gb|AFD94929.1| topoisomerase I, partial [Messor andrei]
Length = 293
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 4/280 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP VK Y GKE+ L+ EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 5 LPPTVKFYYNGKEMKLSQNTEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 INDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P PG WKEV+HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKDSNIPK-PPPGHKWKEVRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699323|gb|AFD94954.1| topoisomerase I, partial [Stenamma sp. mgb02]
Length = 293
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 198/284 (69%), Gaps = 4/284 (1%)
Query: 414 PPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
P +LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEHLPPTVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699357|gb|AFD94971.1| topoisomerase I, partial [Stenamma sp. mgb78]
Length = 293
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 199/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699327|gb|AFD94956.1| topoisomerase I, partial [Stenamma sp. mgb10]
Length = 293
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSRCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGRKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699283|gb|AFD94934.1| topoisomerase I, partial [Stenamma alas]
gi|380699303|gb|AFD94944.1| topoisomerase I, partial [Stenamma expolitum]
Length = 293
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFHYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699343|gb|AFD94964.1| topoisomerase I, partial [Stenamma sp. mgb28]
Length = 293
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLFKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699333|gb|AFD94959.1| topoisomerase I, partial [Stenamma sp. mgb11]
Length = 293
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ + EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPSVKFYYNGKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSKIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699375|gb|AFD94980.1| topoisomerase I, partial [Stenamma striatulum]
Length = 293
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 199/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ ++ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKVSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699307|gb|AFD94946.1| topoisomerase I, partial [Stenamma foveolocephalum]
Length = 293
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDVLINCSKGSNVPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699287|gb|AFD94936.1| topoisomerase I, partial [Stenamma californicum]
Length = 293
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNIPK-PPSGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699339|gb|AFD94962.1| topoisomerase I, partial [Stenamma sp. mgb24]
Length = 293
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 198/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLFKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCPKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699365|gb|AFD94975.1| topoisomerase I, partial [Stenamma schmidti]
Length = 293
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPSVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKTAFNMNFFHDWRESMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIIDLTKCNFKEMHAYFVLKSEERKAMTKEEKLKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNVPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IR+ Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRSEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699289|gb|AFD94937.1| topoisomerase I, partial [Stenamma chiricahua]
gi|380699315|gb|AFD94950.1| topoisomerase I, partial [Stenamma impar]
gi|380699361|gb|AFD94973.1| topoisomerase I, partial [Stenamma punctatoventre]
gi|380699371|gb|AFD94978.1| topoisomerase I, partial [Stenamma smithi]
Length = 293
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699347|gb|AFD94966.1| topoisomerase I, partial [Stenamma sp. mgb38]
Length = 293
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y KE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNSKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699337|gb|AFD94961.1| topoisomerase I, partial [Stenamma sp. mgb16]
Length = 293
Score = 275 bits (703), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 199/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD +Y K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFHYNGREMKLSEETEEIATFYARMLDHEYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699345|gb|AFD94965.1| topoisomerase I, partial [Stenamma sp. mgb31]
Length = 293
Score = 275 bits (703), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 199/284 (70%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E E++AT +A MLD DY KP F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFHYNGREMKLSEETEKIATFYARMLDHDYTTKPAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + +++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSDERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
TVTWLA W + I + KYV L SS LKG+ D +KYE ARKL + IRA Y +D+ S
Sbjct: 180 TVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSVDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699295|gb|AFD94940.1| topoisomerase I, partial [Stenamma diecki]
Length = 293
Score = 275 bits (703), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 196/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRESMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLSKCNFKEIHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699285|gb|AFD94935.1| topoisomerase I, partial [Stenamma brevicorne]
Length = 293
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 196/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLNEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699353|gb|AFD94969.1| topoisomerase I, partial [Stenamma sp. mgb47]
Length = 293
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYESLPPNVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLFKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G W+EV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWREVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699351|gb|AFD94968.1| topoisomerase I, partial [Stenamma sp. mgb45]
Length = 293
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y KE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNSKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699293|gb|AFD94939.1| topoisomerase I, partial [Stenamma diecki]
gi|380699299|gb|AFD94942.1| topoisomerase I, partial [Stenamma dyscheres]
gi|380699301|gb|AFD94943.1| topoisomerase I, partial [Stenamma exasperatum]
gi|380699311|gb|AFD94948.1| topoisomerase I, partial [Stenamma heathi]
Length = 293
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 196/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLSKCNFKEIHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699313|gb|AFD94949.1| topoisomerase I, partial [Stenamma huachucanum]
Length = 293
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y KE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNSKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699297|gb|AFD94941.1| topoisomerase I, partial [Stenamma diversum]
Length = 293
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y +E+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPSVKFYYNNREMKLSEETEEIATFYARMLDHDYTTKSAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLFKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699319|gb|AFD94952.1| topoisomerase I, partial [Stenamma manni]
Length = 293
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLFKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+ D+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRRDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699349|gb|AFD94967.1| topoisomerase I, partial [Stenamma sp. mgb39]
Length = 293
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y +E+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPSVKFYYNSREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699355|gb|AFD94970.1| topoisomerase I, partial [Stenamma sp. mgb66]
Length = 293
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y KE+ L+ + EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNSKEMKLSEDTEEIATFYARMLDHDYTTKSAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699321|gb|AFD94953.1| topoisomerase I, partial [Stenamma sp. mgb01]
Length = 293
Score = 272 bits (696), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY +P VK Y GKE+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPVPPTVKFYYNGKEMKLSGETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKGSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699359|gb|AFD94972.1| topoisomerase I, partial [Stenamma nipponense]
Length = 293
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA YLIDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYLIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699367|gb|AFD94976.1| topoisomerase I, partial [Stenamma schmittii]
Length = 293
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNSNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|397642179|gb|EJK75068.1| hypothetical protein THAOC_03220 [Thalassiosira oceanica]
Length = 455
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 173/447 (38%), Positives = 241/447 (53%), Gaps = 78/447 (17%)
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKD 636
C +PG SW E++HD TV WL W + IN + KY+ LAA SS KG+SDR KY KA KL
Sbjct: 2 CNVPGHSWGELRHDPTVQWLCTWTENINGQN-KYMQLAAQSSFKGKSDRSKYNKAAKLCG 60
Query: 637 YIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNV 695
I IR Y K+ ++D RQ+A A ++ID+LALR G EKD D+EADTVGCC+L+V ++
Sbjct: 61 NIDKIRKDYKKNLRAKDSKLRQLATAMWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHL 120
Query: 696 ECIPPN------KLKFDFLGKDSIQYVNTVE-----------VELPVYKAIGQFQTGKKQ 738
+ P N +++ +FLGKDS+ + T++ + VYK F GKK+
Sbjct: 121 KFDPNNEGDDSLEIELEFLGKDSMLFKQTIDFGSALYTENNGMGEQVYKNFKTFCRGKKK 180
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-----GTGDGDVAVKI 793
++D+F L +LN HLK +M GLTAKVFRTYNAS TL L K G A K+
Sbjct: 181 SEDVFSDLTPPELNKHLKGIMDGLTAKVFRTYNASKTLQDELMKVEQSSGWRSLTAAEKV 240
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG---KP 850
Y AN+EVAI+CNHQR+VSK + L K++ LK K+L+ L G K
Sbjct: 241 TKYNDANREVAILCNHQRSVSKAQETALEGLGSKLQTLKDQKKELKKMLKTLTGGADKKI 300
Query: 851 PLMKDSDGKRKR---------------------------NLAPEALERKMAQTNAKIEKM 883
L D K ++ ++ + +++ +A++ K + +
Sbjct: 301 RLKGDLTAKTEKVNQAIEKAKKKKEKAKTKEEKIAATEADVKAKEMKKALAESKFKSQHL 360
Query: 884 ERDMKTKED-LKTVALGTSKI-----------------------NYLDPRITVAWCKRHE 919
TKE +K +A + KI NY+DPRI+VAWCKR+E
Sbjct: 361 WAKEPTKEQVMKRIAQWSDKIKKMEVNIKHKDDNKEVSLGTSKLNYMDPRISVAWCKRNE 420
Query: 920 VPIEKIFNKSLLAKFAWAMDVDPEFRF 946
VPIEK+F+K+L KF W+M V P + F
Sbjct: 421 VPIEKVFSKTLRDKFNWSMAVPPAWEF 447
>gi|380699373|gb|AFD94979.1| topoisomerase I, partial [Stenamma snellingi]
Length = 293
Score = 271 bits (694), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699331|gb|AFD94958.1| topoisomerase I, partial [Stenamma sp. mgb102]
Length = 293
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/284 (50%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P ++ IN K IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEEVLINCSKGSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + + + KYV L SS LKG+ D +KYE ARKL I IRA Y D+ S
Sbjct: 180 NVTWLASWTENVQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699341|gb|AFD94963.1| topoisomerase I, partial [Stenamma sp. mgb27]
Length = 290
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 192/284 (67%), Gaps = 9/284 (3%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEIATFYARMLDHDYTIKAAFNNNFFYDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK + H K + M+ EEK+ +KE+ + + +Y + +DG KEK
Sbjct: 61 ERDKITDLSKCNFKEM---HAYFVLKSEAMTKEEKQKIKEKNEEIQREYGFCSIDGHKEK 117
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 118 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDS 176
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ DR+KYE ARKL I IRA Y +D+ S
Sbjct: 177 NVTWLASWTENIQG-QMKYVMLNPSSKLKGEKDRQKYETARKLAQSIDKIRAKYREDWKS 235
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D ADTVGCC+L+V ++
Sbjct: 236 KEMHIRQQAVALYFIDKLALRAGNEKDEDRADTVGCCSLRVEHI 279
>gi|380699309|gb|AFD94947.1| topoisomerase I, partial [Stenamma gurkhale]
Length = 293
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 194/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699377|gb|AFD94981.1| topoisomerase I, partial [Stenamma wheelerorum]
Length = 293
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 194/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLLKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699317|gb|AFD94951.1| topoisomerase I, partial [Stenamma kashmirense]
Length = 293
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 194/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHP+MGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPQMGKLKKRVMPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699369|gb|AFD94977.1| topoisomerase I, partial [Stenamma sequoiarum]
Length = 293
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/284 (50%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLQKTEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K + + P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVSK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699329|gb|AFD94957.1| topoisomerase I, partial [Stenamma sp. mgb101]
Length = 293
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 194/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNSNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|380699291|gb|AFD94938.1| topoisomerase I, partial [Stenamma debile]
Length = 293
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 194/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLPKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPK-PPAGHKWKEVRHDT 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|90076392|dbj|BAE87876.1| unnamed protein product [Macaca fascicularis]
Length = 355
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 132/272 (48%), Positives = 185/272 (68%), Gaps = 5/272 (1%)
Query: 431 VNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 488
+ L+ + EEVAT + MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+
Sbjct: 1 MRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFTEIH 60
Query: 489 DWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 548
+ ++ +K ++ EEK+ LKEE ++++ + I+DG +EK+GNF+ EPPGLFRGRG+
Sbjct: 61 RYFVDKAAARKVLTREEKQNLKEEAENLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGD 120
Query: 549 HPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEF 608
HPKMG LK+R+ P D+ IN +D IP+ P G WKEV+ DNTV WLA W + I
Sbjct: 121 HPKMGMLKRRVMPEDVVINCSRDSKIPK-PPAGHQWKEVRSDNTVMWLAAWTESIQ-NSI 178
Query: 609 KYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDK 668
KYV L S LKG+ +K+E AR+L+ ++ IR+ Y D+ S++ RQ AVA Y IDK
Sbjct: 179 KYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQEMKTRQRAVALYFIDK 238
Query: 669 LALRAGNEKDDDE-ADTVGCCTLKVGNVECIP 699
LALRAGNEK+D E ADTVGCC+L+V +V+ P
Sbjct: 239 LALRAGNEKEDGEAADTVGCCSLRVEHVQLHP 270
>gi|241756697|ref|XP_002412547.1| DNA topoisomerase I, putative [Ixodes scapularis]
gi|215506158|gb|EEC15652.1| DNA topoisomerase I, putative [Ixodes scapularis]
Length = 499
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 135/276 (48%), Positives = 183/276 (66%), Gaps = 6/276 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KKW TL H G +F PPY LP V+ Y K V L+P EEVA + MLD DY K
Sbjct: 226 DDGKKWRTLEHKGPVFAPPYEPLPDNVRFFYDNKVVKLSPAAEEVAGFYGRMLDHDYTSK 285
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F +NF+ DWRK + + +I +L C+FK I +++++ E++K MS EEK+A+K +
Sbjct: 286 EAFNKNFFKDWRKTMTPKEAELITDLSKCNFKEIDVYYKQKSEERKAMSKEEKQAIKAQN 345
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K E+Y + I+DG ++K+GNF++EPPGLFRGRGEHPKMG LK+R+ P D+ INIGK+
Sbjct: 346 EKLLEEYGFCIIDGHRQKIGNFKIEPPGLFRGRGEHPKMGMLKRRVMPEDVIINIGKEAK 405
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IP P G WKEV+HDNTV+WL+ W + I + KY+ L SS LKG+ D +KYE ARK
Sbjct: 406 IPPPP-EGHRWKEVRHDNTVSWLSSWTENIL-GQTKYIMLNPSSKLKGEKDMQKYEMARK 463
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKL 669
LK + IR Y +D+ S++ RQ +VA Y IDK+
Sbjct: 464 LKSKVGVIREDYMRDWKSKEMRIRQRSVALYFIDKV 499
>gi|380699335|gb|AFD94960.1| topoisomerase I, partial [Stenamma sp. mgb12]
Length = 293
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/284 (50%), Positives = 197/284 (69%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGEEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG K+K
Sbjct: 61 ERAKITDLSKCNFKEMHTYFVLKSEERKAMTKEEKQKIKEKTEEIQKEYGFCRIDGHKQK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHP MGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPLMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L+ SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIRG-QVKYVNLSPSSKLKGEKDWQKYETARKLGQLIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEK +++ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQWAVALYFIDKLALRAGNEKYENQADTVGCCSLRVEHI 282
>gi|380699305|gb|AFD94945.1| topoisomerase I, partial [Stenamma felixi]
Length = 293
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 195/284 (68%), Gaps = 6/284 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y +E+ L+ E EE+AT +A MLD DY K F NF++DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNSEEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK +++ + E++K M+ EEK+ +KE+ + +++ + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHEHFVRKSEERKAMTKEEKQKIKEKNEEIQKECGFCSLDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+ NF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IDNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPK-PPAGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 282
>gi|427779891|gb|JAA55397.1| Putative dna topoisomerase i [Rhipicephalus pulchellus]
Length = 709
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 135/277 (48%), Positives = 185/277 (66%), Gaps = 7/277 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG KKW TL H G +F P Y LP V+ Y G V L+PE EEVA + MLD DY K
Sbjct: 416 DG-KKWHTLEHKGPVFAPEYEPLPDNVRFYYDGVPVKLSPEAEEVAGFYGRMLDHDYTSK 474
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
F +NF++DWRK + + +I +L+ C+FK I +++ + E++K M+ EEK+A+K +
Sbjct: 475 DVFNKNFFHDWRKCMTSKEAELITDLKKCNFKEIDAYYKMKSEERKAMTKEEKQAIKLQN 534
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K E+Y + I+DG K+K+GNF++EPPGLFRGRGEHPKMG LK+RI P D+ INIGK+
Sbjct: 535 EKLVEEYGFCIIDGHKQKIGNFKIEPPGLFRGRGEHPKMGMLKRRIMPEDVIINIGKEAK 594
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+P+ P PG WKEV+HD+ V+WL+ W + I + KY+ L SS LKG+ D +KYE ARK
Sbjct: 595 VPDPP-PGHKWKEVRHDDNVSWLSSWTENIL-GQTKYIMLNPSSKLKGEKDMQKYEMARK 652
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLA 670
LK + IR Y D+ S++ RQ +VA Y IDK+
Sbjct: 653 LKSCVDKIRQNYMNDWKSKEMRIRQRSVALYFIDKVC 689
>gi|395145928|gb|AFN53404.1| DNA topoisomerase 1, partial [Leptothorax cf. muscorum BBB-2012]
Length = 267
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 186/265 (70%), Gaps = 4/265 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LPH VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 5 LPHSVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 ITDLTKCNFKEIHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+QP D+ IN KD IP+ P G WKEV+HD+ VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVQPEDVLINCSKDSNIPKPP-AGHKWKEVRHDSNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDD 680
RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDED 267
>gi|119602671|gb|EAW82265.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_f [Homo sapiens]
Length = 389
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/275 (47%), Positives = 182/275 (66%), Gaps = 6/275 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPEP 231
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 232 PA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
+ IR+ Y D+ SR+ RQ AVA Y IDK+ ++
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKVGVQ 324
>gi|119602668|gb|EAW82262.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_c [Homo sapiens]
Length = 383
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/275 (47%), Positives = 182/275 (66%), Gaps = 6/275 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 46 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 105
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 106 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 165
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 166 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPEP 225
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 226 PA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 283
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
+ IR+ Y D+ SR+ RQ AVA Y IDK+ ++
Sbjct: 284 VDEIRSQYRADWKSREMKTRQRAVALYFIDKVGVQ 318
>gi|395145932|gb|AFN53406.1| DNA topoisomerase 1, partial [Temnothorax rugatulus]
Length = 267
Score = 265 bits (677), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD +Y K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHEYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ +EK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLTKCNFKEMHAYFLQKSEERKAMTKDEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-AGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYRDDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|238589968|ref|XP_002392174.1| hypothetical protein MPER_08287 [Moniliophthora perniciosa FA553]
gi|215457866|gb|EEB93104.1| hypothetical protein MPER_08287 [Moniliophthora perniciosa FA553]
Length = 343
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/268 (54%), Positives = 186/268 (69%), Gaps = 9/268 (3%)
Query: 423 KMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQN---- 478
K + GK +NL PE EEVA +A +++TD+ Q F +NF+ DW K+L ++H N
Sbjct: 3 KTKHDGKVLNLPPESEEVAGFYAALIETDHAQDAAFNKNFFEDWLKVL-QDHPPCNGIKA 61
Query: 479 --LEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFR 536
+ CDF+P+Y++ + +K KKK S+ EKK +K++K++ E KY +DG KEKVGNFR
Sbjct: 62 TDFDKCDFRPMYEYFEAEKAKKKATSAAEKKEIKKQKDEAEAKYTHRFLDGRKEKVGNFR 121
Query: 537 VEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWL 596
VEPPGLFRGRGEHPK G LK R+ P DI +NIGKD P P IPG+ WK ++HDNTVTWL
Sbjct: 122 VEPPGLFRGRGEHPKKGSLKYRVCPEDIALNIGKDAPTPIPNIPGK-WKAIQHDNTVTWL 180
Query: 597 AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTR 656
A + IN + KYVFLAA SSLKG+SD K+EKAR+LK ++ IR YT D S+
Sbjct: 181 ATRTENIN-QSHKYVFLAAGSSLKGRSDMAKFEKARELKIHVDRIRQNYTVDLKSKVMAE 239
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADT 684
RQ A AT +DKLALRAGNEK +DEADT
Sbjct: 240 RQRATATCFVDKLALRAGNEKGEDEADT 267
>gi|395145934|gb|AFN53407.1| DNA topoisomerase 1, partial [Recurvidris sp. TH01]
Length = 267
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 184/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKVAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSRCNFKEMHAYFVQKSEERKAMTKEEKQQIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN D +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSFDSNMPKPP-AGHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y ID+LALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDRLALRAGNEKDED 267
>gi|313219335|emb|CBY16450.1| unnamed protein product [Oikopleura dioica]
Length = 325
Score = 262 bits (669), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 158/332 (47%), Positives = 212/332 (63%), Gaps = 21/332 (6%)
Query: 612 FLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLAL 671
L A+S +KG+ D KYEKARKLKD I +R Y D S+ RQ AVA Y IDKLAL
Sbjct: 1 MLNANSRIKGEKDWLKYEKARKLKDIIGEVRRTYEADLQSKMMADRQRAVAMYFIDKLAL 60
Query: 672 RAGNEKDDDEA-DTVGCCTLKVGNVECIPPNK-LKFDFLGKDSIQYVNTVEVELPVYKAI 729
RAGNEKD +EA DTVGCC+L+V +V+ ++FDFLGKDS++Y N +V V+K +
Sbjct: 61 RAGNEKDTEEAADTVGCCSLRVEHVKGEKQQYVIEFDFLGKDSMRYHNFTQVSKRVFKNV 120
Query: 730 GQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGD 788
F K D+LFD+LDT +LN HL +M GLTAKVFRTYNAS TL L++ T D
Sbjct: 121 RIFCENKSGEDELFDRLDTGRLNKHLNSIMDGLTAKVFRTYNASKTLQEQLDETTKKDLS 180
Query: 789 VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG 848
VA + Y AN++VAI+CNH+RT KT QM + EKI D + +K+ + ++ AKK
Sbjct: 181 VAEYVLTYNNANRQVAILCNHKRTAPKTFDDQMKKAEEKISDKEEKIKEKKKEVKAAKKN 240
Query: 849 KPPLMKDSDGKRKR--NLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYL 906
DS K+++ L + ++ K A+T+ +E+ K +ALGTSK+NYL
Sbjct: 241 GE----DSSKKKQQLARLEDQLIKLKCAKTD------------REENKEIALGTSKLNYL 284
Query: 907 DPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
DPRIT+ W K+ +VPIEK++NK+ KFAWA+
Sbjct: 285 DPRITIGWAKKWDVPIEKVYNKTQRDKFAWAI 316
>gi|145501721|ref|XP_001436841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403985|emb|CAK69444.1| unnamed protein product [Paramecium tetraurelia]
Length = 725
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 186/294 (63%), Gaps = 5/294 (1%)
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
W L H+GV+FPP Y H V ++Y GK + LT EQEE+ T +A + + Y K +R+NF
Sbjct: 45 WRYLEHHGVLFPPFYKRHNVGLIYNGKLITLTEEQEELCTYWAQSIGSPYENKEIYRKNF 104
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMW 522
L+ L+ DF I + ++Q+ + S E+KK K E++++E Y +
Sbjct: 105 ----ESLMQTKFEGFQLDKADFTKIREHLEQQRLLRLNKSDEQKKQEKLERDQRELFYGY 160
Query: 523 AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGE 582
A+VDG E+VGN+ +E P LF+GRGEHPK G LK RI P ++T+N+ P+P+C +PG
Sbjct: 161 ALVDGCLERVGNYTLEQPTLFKGRGEHPKAGLLKARIFPEELTVNLSTQAPVPQCKLPGH 220
Query: 583 SWKEVKHDNTVTWL-AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSI 641
SW ++ H N VTWL ++ + I KYV AA+S K +D+ KYEKAR+LK+ I I
Sbjct: 221 SWGKIVHRNDVTWLFSYVDSSIRKDNHKYVQFAATSRFKQMNDKRKYEKARRLKNQIDQI 280
Query: 642 RAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
R YTK S RQ+ ATYLIDKLALR GN+KD+DEADTVGCC+L+V ++
Sbjct: 281 RENYTKKLQSDSIKERQLGTATYLIDKLALRVGNDKDEDEADTVGCCSLRVEHI 334
>gi|395145898|gb|AFN53389.1| DNA topoisomerase 1, partial [Crematogaster meijerei]
Length = 267
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSSIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145684|gb|AFN53282.1| DNA topoisomerase 1, partial [Crematogaster cf. gabonensis
BBB-2012]
gi|395145688|gb|AFN53284.1| DNA topoisomerase 1, partial [Crematogaster wellmani]
gi|395145790|gb|AFN53335.1| DNA topoisomerase 1, partial [Crematogaster sisa]
gi|395145838|gb|AFN53359.1| DNA topoisomerase 1, partial [Crematogaster cf. desperans BBB-2012]
Length = 267
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145910|gb|AFN53395.1| DNA topoisomerase 1, partial [Crematogaster sp. ss11_ahe]
Length = 267
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSSIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145672|gb|AFN53276.1| DNA topoisomerase 1, partial [Crematogaster abrupta]
Length = 267
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ +EK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLAKCNFKEMHAYFMQKSEERKAMTKKEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145800|gb|AFN53340.1| DNA topoisomerase 1, partial [Crematogaster sp. ss_AUS2]
Length = 267
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMSES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|389611807|dbj|BAM19469.1| topoisomerase, partial [Papilio xuthus]
Length = 279
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/278 (49%), Positives = 183/278 (65%), Gaps = 12/278 (4%)
Query: 669 LALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVEL 723
LALRAGNEKDDD+ADTVGCC+L+V +++ K FDFLGKDSI+Y N V VE
Sbjct: 1 LALRAGNEKDDDQADTVGCCSLRVEHIQLHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEK 60
Query: 724 PVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG 783
V+K + F K+ +DDLFD+L+T LN HLK+LMPGLTAKVFRTYNASITL L++
Sbjct: 61 RVFKNLELFMENKRDSDDLFDRLNTQTLNEHLKDLMPGLTAKVFRTYNASITLQRQLDEL 120
Query: 784 TG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
T + + KI Y RAN+ VA++CNHQR V K HS M L EKI+ + + + DL
Sbjct: 121 TDPNASIPEKILAYNRANRAVAVLCNHQRAVPKGHSKSMEALKEKIQAKRDQIDEAEEDL 180
Query: 843 DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSK 902
A K G K +A + + + + +++K+E +++ KT+ALGTSK
Sbjct: 181 REATKAAKR------GSVKEKIAADKKKTALERLKEQLKKLELQETDRDENKTIALGTSK 234
Query: 903 INYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV 940
+NYLDPRI+VAWCK+H VPIEKI+NK+ KF WA+D+
Sbjct: 235 LNYLDPRISVAWCKKHGVPIEKIYNKTQRDKFRWAIDM 272
>gi|395145720|gb|AFN53300.1| DNA topoisomerase 1, partial [Crematogaster grevei]
gi|395145724|gb|AFN53302.1| DNA topoisomerase 1, partial [Crematogaster hova complex sp.
BBB-2012]
gi|395145734|gb|AFN53307.1| DNA topoisomerase 1, partial [Crematogaster liengmei]
gi|395145740|gb|AFN53310.1| DNA topoisomerase 1, partial [Crematogaster mahery]
gi|395145742|gb|AFN53311.1| DNA topoisomerase 1, partial [Crematogaster malala]
gi|395145786|gb|AFN53333.1| DNA topoisomerase 1, partial [Crematogaster sabatra]
gi|395145796|gb|AFN53338.1| DNA topoisomerase 1, partial [Crematogaster cf. luctans BBB-2012]
gi|395145834|gb|AFN53357.1| DNA topoisomerase 1, partial [Crematogaster cf. bequaerti BBB-2012]
Length = 267
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145802|gb|AFN53341.1| DNA topoisomerase 1, partial [Crematogaster sp. ss_AUS3]
Length = 267
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHXYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145844|gb|AFN53362.1| DNA topoisomerase 1, partial [Crematogaster degeeri lunaris]
Length = 267
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMRLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145730|gb|AFN53305.1| DNA topoisomerase 1, partial [Crematogaster isolata]
gi|395145758|gb|AFN53319.1| DNA topoisomerase 1, partial [Crematogaster obnigra]
gi|395145780|gb|AFN53330.1| DNA topoisomerase 1, partial [Crematogaster sagei]
gi|395145816|gb|AFN53348.1| DNA topoisomerase 1, partial [Crematogaster cf. ochracea BBB-2012]
gi|395145822|gb|AFN53351.1| DNA topoisomerase 1, partial [Crematogaster castanea]
gi|395145826|gb|AFN53353.1| DNA topoisomerase 1, partial [Crematogaster cf. latuka BBB-2012]
gi|395145828|gb|AFN53354.1| DNA topoisomerase 1, partial [Crematogaster sp. ss.TZ2]
gi|395145830|gb|AFN53355.1| DNA topoisomerase 1, partial [Crematogaster cf. gerstaeckeri
BBB-2012]
gi|395145832|gb|AFN53356.1| DNA topoisomerase 1, partial [Crematogaster cf. rufigena BBB-2012]
gi|395145842|gb|AFN53361.1| DNA topoisomerase 1, partial [Crematogaster sewellii]
gi|395145848|gb|AFN53364.1| DNA topoisomerase 1, partial [Crematogaster sp. ss07_kba]
gi|395145850|gb|AFN53365.1| DNA topoisomerase 1, partial [Crematogaster lobata]
gi|395145852|gb|AFN53366.1| DNA topoisomerase 1, partial [Crematogaster sewellii dentata]
gi|395145858|gb|AFN53369.1| DNA topoisomerase 1, partial [Crematogaster degeeri]
gi|395145860|gb|AFN53370.1| DNA topoisomerase 1, partial [Crematogaster sp. ss18_anka]
gi|395145862|gb|AFN53371.1| DNA topoisomerase 1, partial [Crematogaster sp. ss19_mal]
gi|395145868|gb|AFN53374.1| DNA topoisomerase 1, partial [Crematogaster sp. ss23_loy]
gi|395145870|gb|AFN53375.1| DNA topoisomerase 1, partial [Crematogaster sp. ss24_rano]
Length = 267
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145698|gb|AFN53289.1| DNA topoisomerase 1, partial [Crematogaster coarctata]
gi|395145736|gb|AFN53308.1| DNA topoisomerase 1, partial [Crematogaster lineolata]
gi|395145778|gb|AFN53329.1| DNA topoisomerase 1, partial [Crematogaster pilosa]
gi|395145788|gb|AFN53334.1| DNA topoisomerase 1, partial [Crematogaster scutellaris]
gi|395145810|gb|AFN53345.1| DNA topoisomerase 1, partial [Crematogaster ionia]
gi|395145904|gb|AFN53392.1| DNA topoisomerase 1, partial [Crematogaster agnetis]
gi|395145906|gb|AFN53393.1| DNA topoisomerase 1, partial [Crematogaster aberrans]
Length = 267
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|156094480|ref|XP_001613277.1| topoisomerase I [Plasmodium vivax Sal-1]
gi|148802151|gb|EDL43550.1| topoisomerase I, putative [Plasmodium vivax]
Length = 931
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 169/476 (35%), Positives = 244/476 (51%), Gaps = 98/476 (20%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H G+IF PPY+ H + + YK ++ L + EE+AT + ++ +DY K KF N
Sbjct: 189 QWHYLEHRGLIFSPPYVQHNIPIFYKSIKLQLNEKAEELATYWCSVIGSDYCTKEKFILN 248
Query: 462 FWNDWRKLLGKNHVIQ-------------NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
F+ + L K+++I+ N + DF PI D + +E+K + EEK+
Sbjct: 249 FFRTFICTLEKDNIIRQENESKLKKGDISNFKFIDFMPIKDHLVKLREEKLNRTKEEKEE 308
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K+ ++++E Y +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI
Sbjct: 309 EKKLRSEKELPYTYALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINI 368
Query: 569 GKDVPIPEC--PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
KD P+P + G W + HDN VTWLA++ D IN + KY FL+A S KG D
Sbjct: 369 SKDAPVPRLYDDMCGHCWGDTYHDNKVTWLAYYKDSIND-QLKYTFLSAQSKFKGYKDFL 427
Query: 627 KYEKARKLK--------DYIHSIR-----------AAYTKDFVS-RDGTRRQI------- 659
KYE ARKLK DY H +R A Y DF++ R G + I
Sbjct: 428 KYENARKLKSCVHKIREDYRHKMRNKSILDKQLGTAVYLIDFLALRVGGEKDIDEEADTV 487
Query: 660 AVATYLIDKLAL-----------------------RAGNEKDDDEADTVGCCTLKVGNVE 696
+ ++ ++ R+ EK E V + + N E
Sbjct: 488 GCCSLRVEHVSFSHEVPIKNESRGERSKGERSKGERSKGEKSKGEKSKVKNGSEETANGE 547
Query: 697 CIPPNK------------------------------LKFDFLGKDSIQYVNTVEVELPVY 726
PPN+ L FDFLGKDSI+Y NTV+++ Y
Sbjct: 548 --PPNEGTTPNESDHKGSGKLPLPKNLDDIEEDHCYLTFDFLGKDSIRYFNTVKLDKQAY 605
Query: 727 KAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
+ F K +++ +FD+++ +KLN +LKE+MP L+AKVFRTYNASITLD L +
Sbjct: 606 INMIIFCKKKHKDEGVFDQINCSKLNDYLKEIMPTLSAKVFRTYNASITLDQQLKR 661
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 106/170 (62%), Gaps = 20/170 (11%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL 852
I+ + AN+EVAI+CNHQR+V K H + MS++ ++IE +K+ + L KKG
Sbjct: 766 INFFNNANREVAILCNHQRSVPKQHDSAMSKIKKQIEIYSEDIKEYKKYLQYLKKG---- 821
Query: 853 MKDS-----------DG-----KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
M + DG K K N+ E+ ++K+ K+E+++ MK ++D KT+
Sbjct: 822 MNEQSFTFVSKVVALDGSLRPNKVKENMKEESCKKKLIALIKKVEQLKHQMKVRDDNKTI 881
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
ALGTSKINY+DPRITVA+CKR E+PIEKIFN+SL KF WAM V F F
Sbjct: 882 ALGTSKINYMDPRITVAFCKRFEIPIEKIFNRSLRLKFPWAMFVTKNFTF 931
>gi|395145732|gb|AFN53306.1| DNA topoisomerase 1, partial [Crematogaster lango]
gi|395145794|gb|AFN53337.1| DNA topoisomerase 1, partial [Crematogaster cf. concava BBB-2012]
Length = 267
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145702|gb|AFN53291.1| DNA topoisomerase 1, partial [Crematogaster coriaria]
Length = 267
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLAKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145856|gb|AFN53368.1| DNA topoisomerase 1, partial [Crematogaster sp. ss15_mva]
Length = 267
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EE+AT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEIATFYARMLDHDYTTKPAFNSNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145680|gb|AFN53280.1| DNA topoisomerase 1, partial [Crematogaster cf. wasmanni BBB-2012]
gi|395145686|gb|AFN53283.1| DNA topoisomerase 1, partial [Crematogaster cf. buchneri BBB-2012]
gi|395145744|gb|AFN53312.1| DNA topoisomerase 1, partial [Crematogaster marioni]
gi|395145762|gb|AFN53321.1| DNA topoisomerase 1, partial [Crematogaster opaca]
Length = 267
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145694|gb|AFN53287.1| DNA topoisomerase 1, partial [Crematogaster cf. ferrarii BBB-2012]
gi|395145700|gb|AFN53290.1| DNA topoisomerase 1, partial [Crematogaster cf. cylindriceps
BBB-2012]
gi|395145798|gb|AFN53339.1| DNA topoisomerase 1, partial [Crematogaster cf. laeviceps BBB-2012]
gi|395145814|gb|AFN53347.1| DNA topoisomerase 1, partial [Crematogaster cf. excisa BBB-2012]
gi|395145824|gb|AFN53352.1| DNA topoisomerase 1, partial [Crematogaster sp. ss.TH1]
gi|395145836|gb|AFN53358.1| DNA topoisomerase 1, partial [Crematogaster flaviventris]
gi|395145854|gb|AFN53367.1| DNA topoisomerase 1, partial [Crematogaster sp. ss10_atbao]
gi|395145866|gb|AFN53373.1| DNA topoisomerase 1, partial [Crematogaster sp. ss22_isa]
gi|395145882|gb|AFN53381.1| DNA topoisomerase 1, partial [Crematogaster treubi]
Length = 267
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145804|gb|AFN53342.1| DNA topoisomerase 1, partial [Crematogaster mjobergi]
gi|395145806|gb|AFN53343.1| DNA topoisomerase 1, partial [Crematogaster sp. ss_AUS5]
Length = 267
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 139/265 (52%), Positives = 184/265 (69%), Gaps = 4/265 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 5 LPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPTFNNNFFHDWREVMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 INDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDD 680
RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145712|gb|AFN53296.1| DNA topoisomerase 1, partial [Crematogaster flava]
gi|395145818|gb|AFN53349.1| DNA topoisomerase 1, partial [Crematogaster cf. rogenhoferi
BBB-2012]
Length = 267
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF+NDWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFNDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145900|gb|AFN53390.1| DNA topoisomerase 1, partial [Crematogaster stadelmanni]
Length = 267
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYDPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145754|gb|AFN53317.1| DNA topoisomerase 1, partial [Crematogaster nigropilosa]
Length = 267
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEETQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-SGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145756|gb|AFN53318.1| DNA topoisomerase 1, partial [Crematogaster nosibeensis]
Length = 267
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHRWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ + +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKNWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145812|gb|AFN53346.1| DNA topoisomerase 1, partial [Crematogaster fruhstorferi]
gi|395145880|gb|AFN53380.1| DNA topoisomerase 1, partial [Crematogaster tetracantha]
Length = 267
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLAKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145748|gb|AFN53314.1| DNA topoisomerase 1, partial [Crematogaster mesonotalis]
Length = 267
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145728|gb|AFN53304.1| DNA topoisomerase 1, partial [Crematogaster irritabilis]
Length = 267
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|343957943|emb|CBY93680.1| putative top1 protein, partial [Glomus diaphanum]
Length = 357
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 166/386 (43%), Positives = 213/386 (55%), Gaps = 83/386 (21%)
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
A+S+LKGQSD +K+EKAR+LKD + IR Y KD ++ RQ A A Y ID+LALRAG
Sbjct: 1 ANSTLKGQSDFKKFEKARELKDIVAKIRNDYNKDMTNKVTAIRQRATAMYFIDRLALRAG 60
Query: 675 NEKDD-DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
NEK + +EADTVGCC+L+ ++ N + FDFLG ++
Sbjct: 61 NEKKEGEEADTVGCCSLRFEHIRLEAGNTVHFDFLGTRNLD------------------- 101
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
D LFD+ T +LN HL M GLTAKVFRTYNAS T L G V KI
Sbjct: 102 -----KDQLFDR--TQELNKHLSSYMDGLTAKVFRTYNASHTFQEQLKNTPVSGSVNEKI 154
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGV---LKDLRVDLD-RAKKGK 849
Y RAN+EVAI+CNHQRTVSKT QM+R+ +KI LK LK + LD + KK +
Sbjct: 155 LAYNRANREVAILCNHQRTVSKTFDNQMNRIEDKIRALKYQKMRLKKTMLTLDPKLKKKR 214
Query: 850 PPL----------------------------------MKDSDGKRKRNLAPE----ALER 871
P L MK++ +R L+ E +E
Sbjct: 215 PELDEPESDLGEEWCEEYEKHLEEKEKIDFERSLKKIMKNAS---QRQLSKERKTGKMEV 271
Query: 872 KMAQT----NAKIEKMERDMKT-------KEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
K +QT A+IEK+ +K KE+ KT ALGTSKINY+DPRI+ AWC +++V
Sbjct: 272 KKSQTVEKVEAQIEKVNERIKVVNLTKVEKEENKTTALGTSKINYIDPRISAAWCYKYDV 331
Query: 921 PIEKIFNKSLLAKFAWAMDVDPEFRF 946
PI+KIFNKSL KF WAM+VD ++F
Sbjct: 332 PIDKIFNKSLRDKFKWAMEVDKNWKF 357
>gi|395145918|gb|AFN53399.1| DNA topoisomerase 1, partial [Crematogaster longipilosa]
Length = 267
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
IQ+L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIQDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145884|gb|AFN53382.1| DNA topoisomerase 1, partial [Crematogaster weberi]
Length = 267
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 184/265 (69%), Gaps = 4/265 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 5 LPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 INDLAKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDD 680
RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145690|gb|AFN53285.1| DNA topoisomerase 1, partial [Crematogaster binghamii]
Length = 267
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYDPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
IQ+L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIQDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145912|gb|AFN53396.1| DNA topoisomerase 1, partial [Crematogaster arcuata]
Length = 267
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145714|gb|AFN53297.1| DNA topoisomerase 1, partial [Crematogaster flavomicrops]
Length = 267
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145872|gb|AFN53376.1| DNA topoisomerase 1, partial [Crematogaster subcircularis]
Length = 267
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLAKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEETQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145706|gb|AFN53293.1| DNA topoisomerase 1, partial [Crematogaster dahlii]
Length = 267
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLAKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145840|gb|AFN53360.1| DNA topoisomerase 1, partial [Crematogaster kelleri]
Length = 267
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145902|gb|AFN53391.1| DNA topoisomerase 1, partial [Crematogaster ranavalonae]
Length = 267
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVA +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVAAFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145746|gb|AFN53313.1| DNA topoisomerase 1, partial [Crematogaster sp. ortho.TH01]
Length = 267
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNSNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKTMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDQIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145782|gb|AFN53331.1| DNA topoisomerase 1, partial [Crematogaster sp. rhachio.PNG2]
Length = 267
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145914|gb|AFN53397.1| DNA topoisomerase 1, partial [Crematogaster cf. dolens BBB-2012]
Length = 267
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYERLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTVFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-SGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145892|gb|AFN53386.1| DNA topoisomerase 1, partial [Crematogaster telolafy]
Length = 267
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-SGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145908|gb|AFN53394.1| DNA topoisomerase 1, partial [Crematogaster santschii]
Length = 267
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV++D
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRYDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145846|gb|AFN53363.1| DNA topoisomerase 1, partial [Crematogaster madagascariensis]
gi|395145864|gb|AFN53372.1| DNA topoisomerase 1, partial [Crematogaster sp. ss21_avy]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145682|gb|AFN53281.1| DNA topoisomerase 1, partial [Crematogaster cf. depressa BBB-2012]
gi|395145820|gb|AFN53350.1| DNA topoisomerase 1, partial [Crematogaster fraxatrix]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145916|gb|AFN53398.1| DNA topoisomerase 1, partial [Crematogaster sordidula]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145678|gb|AFN53279.1| DNA topoisomerase 1, partial [Crematogaster ampullaris]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145784|gb|AFN53332.1| DNA topoisomerase 1, partial [Crematogaster rothneyi]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIIDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145726|gb|AFN53303.1| DNA topoisomerase 1, partial [Crematogaster inflata]
gi|395145750|gb|AFN53315.1| DNA topoisomerase 1, partial [Crematogaster modiglianii]
gi|395145760|gb|AFN53320.1| DNA topoisomerase 1, partial [Crematogaster onusta]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLAKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145774|gb|AFN53327.1| DNA topoisomerase 1, partial [Crematogaster osakensis]
Length = 267
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKSMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|389584228|dbj|GAB66961.1| topoisomerase I [Plasmodium cynomolgi strain B]
Length = 975
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 249/463 (53%), Gaps = 44/463 (9%)
Query: 257 SGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDT 316
S +K + E + K + ST + + V + + +S++G ++ +KP S+
Sbjct: 55 SNSKTVLKKEASTVIRKAKSKTSTKESKEALLNECKVVKKGKASSNTGDTAKEKPTTSNN 114
Query: 317 SKEVK---VKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKI 373
+ K VK+ V++K D D ++ +K VKK
Sbjct: 115 KTDKKNAVVKKRKSNVKEKKDTDGKPAAAKVVKKRESKVKKET----------------- 157
Query: 374 NKKTKKVIKNSQ-----YSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKG 428
NK+ KKV+K ++ ++ + + D Q W L H G+IF PPY+ H + + YK
Sbjct: 158 NKRPKKVVKKTEENFEPINRWWEKIDHQTDIQ--WHYLEHRGLIFSPPYVQHHIPIFYKS 215
Query: 429 KEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQ----------- 477
++ L + EE+AT + ++ +DY K KF NF+ + L K+++I+
Sbjct: 216 IKLQLNEKAEELATYWCSVIGSDYCTKEKFILNFFRTFIYTLEKDNIIRQENESKLKKGD 275
Query: 478 --NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
N + DF PI D + +E+K + EEK+ K+ ++++E Y +A+VD ++EK+ +
Sbjct: 276 ISNFKFIDFMPIKDHLVKLREEKLNRTKEEKEEEKKLRSEKELPYTYALVDWIREKISSN 335
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC--PIPGESWKEVKHDNTV 593
+ EPPGLFRGRGEHPK G LKKRI P D+ INI KD P+P + G W + HDN V
Sbjct: 336 KAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRLYDDMCGHCWGDTYHDNKV 395
Query: 594 TWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRD 653
TWLA++ D IN + KY FL+A S KG D KYE ARKLK +H IR Y S+
Sbjct: 396 TWLAYYKDSIND-QLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYRHKMRSKS 454
Query: 654 GTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGNV 695
+Q+ A YLID LALR G EKD D+EADTVGCC+L+V +V
Sbjct: 455 ILDKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHV 497
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 101/158 (63%), Gaps = 12/158 (7%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL 852
I+ + AN+EVAI+CNHQR+V K H MS++ ++IE +K+ + L KKG
Sbjct: 809 INFFNNANREVAILCNHQRSVPKQHDTAMSKIKKQIEIYSEDIKEYKKYLQYLKKGTNEQ 868
Query: 853 -------MKDSDG-----KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
+ DG K K N+ E+ ++K+ K+E+++ MK ++D KT+ALGT
Sbjct: 869 SFTFVSKVVALDGSLRPNKVKENMKEESCKKKLIALIKKVEQLKHQMKVRDDNKTIALGT 928
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
SKINY+DPRITVA+CKR E+PIEKIFN+SL KF WAM
Sbjct: 929 SKINYMDPRITVAFCKRFEIPIEKIFNRSLRLKFPWAM 966
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 58/80 (72%)
Query: 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGL 762
+ DFLGKDSI+Y NTV ++ Y + F K +++ +FD+++ +KLN +LKE+MP L
Sbjct: 598 ITLDFLGKDSIRYFNTVMLDKQAYINMIIFCKNKHKDEGVFDQINCSKLNDYLKEIMPTL 657
Query: 763 TAKVFRTYNASITLDGMLNK 782
+AKVFRTYNASITLD L +
Sbjct: 658 SAKVFRTYNASITLDQQLKR 677
>gi|395145878|gb|AFN53379.1| DNA topoisomerase 1, partial [Crematogaster tenuicula]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPSIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145772|gb|AFN53326.1| DNA topoisomerase 1, partial [Crematogaster reticulata]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNSNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145752|gb|AFN53316.1| DNA topoisomerase 1, partial [Crematogaster quadriformis]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145876|gb|AFN53378.1| DNA topoisomerase 1, partial [Crematogaster sumichrasti]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145696|gb|AFN53288.1| DNA topoisomerase 1, partial [Crematogaster torosa]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPNVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145676|gb|AFN53278.1| DNA topoisomerase 1, partial [Crematogaster acuta]
gi|395145704|gb|AFN53292.1| DNA topoisomerase 1, partial [Crematogaster corvina]
gi|395145716|gb|AFN53298.1| DNA topoisomerase 1, partial [Crematogaster formosa]
gi|395145764|gb|AFN53322.1| DNA topoisomerase 1, partial [Crematogaster victima]
gi|395145886|gb|AFN53383.1| DNA topoisomerase 1, partial [Crematogaster rasoherinae]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145710|gb|AFN53295.1| DNA topoisomerase 1, partial [Crematogaster emeryi]
gi|395145776|gb|AFN53328.1| DNA topoisomerase 1, partial [Crematogaster paradoxa]
Length = 267
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145894|gb|AFN53387.1| DNA topoisomerase 1, partial [Crematogaster mpanjono]
gi|395145896|gb|AFN53388.1| DNA topoisomerase 1, partial [Crematogaster volamena]
Length = 267
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145718|gb|AFN53299.1| DNA topoisomerase 1, partial [Crematogaster fritzi]
Length = 267
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145792|gb|AFN53336.1| DNA topoisomerase 1, partial [Crematogaster minutissima smithi]
Length = 267
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145692|gb|AFN53286.1| DNA topoisomerase 1, partial [Crematogaster borneensis]
gi|395145722|gb|AFN53301.1| DNA topoisomerase 1, partial [Crematogaster sp. HFmsp10]
Length = 267
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKSAFNSNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145708|gb|AFN53294.1| DNA topoisomerase 1, partial [Crematogaster decamera]
Length = 267
Score = 255 bits (652), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKSAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145766|gb|AFN53323.1| DNA topoisomerase 1, partial [Crematogaster sp. ortho.CAR1]
Length = 267
Score = 255 bits (652), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYERLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-SGHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|221057147|ref|XP_002259711.1| topoisomerase I [Plasmodium knowlesi strain H]
gi|193809783|emb|CAQ40487.1| topoisomerase I, putative [Plasmodium knowlesi strain H]
Length = 924
Score = 255 bits (652), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 213/361 (59%), Gaps = 25/361 (6%)
Query: 357 TNTAKATKSVSSSSNK-INKKTKKVIKNSQ-----YSKSTKMLPGSGDGQKKWTTLVHNG 410
T AK K S K NK+ KK+IK ++ ++ + + D Q W L H G
Sbjct: 140 TTGAKVVKKRESKVKKETNKRPKKIIKKTEENFEPINRWWEKIDHQTDIQ--WHYLEHRG 197
Query: 411 VIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL 470
+IF PPY+ H + + YK ++ L + EE+AT + ++ +DY K KF NF+ + L
Sbjct: 198 LIFSPPYVQHHIPIFYKSIKLELNEKAEELATYWCSVIGSDYCTKEKFILNFFRTFICTL 257
Query: 471 GKNHVIQ-------------NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
K+++I+ N + DF PI D + +E+K + EEK+ K+ ++++E
Sbjct: 258 EKDNIIRQENENKLKKGDISNFQFIDFMPIKDHLVKLREEKLNRTKEEKEEEKKLRSEKE 317
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI KD P+P
Sbjct: 318 LPHTYALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRL 377
Query: 578 --PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
+ G SW ++ HDN VTWLA++ D IN + KY FL+A S KG D KYE ARKLK
Sbjct: 378 YGDMCGHSWGDIYHDNKVTWLAYYKDSIND-QLKYTFLSAQSKFKGYKDFLKYENARKLK 436
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTVGCCTLKVGN 694
+H IR Y S++ +Q+ A YLID LALR G EKD D+EADTVGCC+L+V +
Sbjct: 437 SCVHKIREDYKHKMKSKNILEKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEH 496
Query: 695 V 695
V
Sbjct: 497 V 497
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 12/166 (7%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP-- 850
I+ + AN+EVAI+CNHQR+V K H MS++ ++IE +K+ + L KKG
Sbjct: 759 INFFNNANREVAILCNHQRSVPKQHDTAMSKIKKQIEIYSEDIKEYKKYLQYLKKGTKEE 818
Query: 851 -----PLMKDSDG-----KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGT 900
+ DG K K N+ E+ ++K+ K+E+++ MK ++D KT+ALGT
Sbjct: 819 SFTFVSKVVALDGSLRPNKVKENMKEESCKKKLIALIKKVEQLKHQMKVRDDNKTIALGT 878
Query: 901 SKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
SKINY+DPRITVA+CKR E+PIEKIFN+SL KF WAM V F F
Sbjct: 879 SKINYMDPRITVAFCKRFEIPIEKIFNRSLRLKFPWAMFVTKNFTF 924
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGL 762
+ DFLGKDSI+Y NTV + Y + F K +++ +FD+++ +KLN +LKE+MP L
Sbjct: 573 ITLDFLGKDSIRYFNTVLLNKQAYINMIIFCKNKHKDEGVFDQINCSKLNDYLKEIMPTL 632
Query: 763 TAKVFRTYNASITLDGMLNK 782
+AKVFRTYNASITLD L +
Sbjct: 633 SAKVFRTYNASITLDQQLKR 652
>gi|395145888|gb|AFN53384.1| DNA topoisomerase 1, partial [Crematogaster razana]
Length = 267
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-SGHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145768|gb|AFN53324.1| DNA topoisomerase 1, partial [Crematogaster baduvi]
Length = 267
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 183/265 (69%), Gaps = 4/265 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 5 LPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 INDLFKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDD 680
RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145874|gb|AFN53377.1| DNA topoisomerase 1, partial [Crematogaster subnuda]
Length = 267
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EEVAT +A MLD DY K F NF+NDWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEVATFYARMLDHDYTTKSVFNINFFNDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIVDLTKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145930|gb|AFN53405.1| DNA topoisomerase 1, partial [Tetramorium validiusculum]
Length = 267
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 186/269 (69%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKYVFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIVDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G W+EV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSKIPKPP-SGHKWREVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQG-QVKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|189094079|gb|ACD75867.1| topoisomerase I [Calosoma scrutator]
Length = 281
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/284 (49%), Positives = 184/284 (64%), Gaps = 12/284 (4%)
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKD 711
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++ K FDFLGKD
Sbjct: 3 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDDKEYVVVFDFLGKD 62
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYN
Sbjct: 63 SIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYN 122
Query: 772 ASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIED 830
AS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE
Sbjct: 123 ASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQ 182
Query: 831 LKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTK 890
K + ++ + A++ G K + + ++ + + ++ K+E K
Sbjct: 183 KKDTISEMERQVQDAQRAAKR------GSVKEKVVYDKKKKALEKLKDQLVKLEVQETDK 236
Query: 891 EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
++ K++ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+ KF
Sbjct: 237 DENKSIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRDKF 280
>gi|395145770|gb|AFN53325.1| DNA topoisomerase 1, partial [Crematogaster cf. gavapiga BBB-2012]
Length = 267
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKGAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLFKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145890|gb|AFN53385.1| DNA topoisomerase 1, partial [Crematogaster madecassa]
Length = 267
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLTKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV++D
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-SGHKWKEVRYDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145920|gb|AFN53400.1| DNA topoisomerase 1, partial [Aphaenogaster occidentalis]
Length = 267
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 184/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ + EE+AT +A MLD DY K F NF+ DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFTDWREMMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + + E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKITDLSKCNFKEMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-AGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145674|gb|AFN53277.1| DNA topoisomerase 1, partial [Crematogaster aculeata]
Length = 267
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/265 (50%), Positives = 182/265 (68%), Gaps = 4/265 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 5 LPPTIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 INDLSKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEVRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + + + KYV L SS LKG+ D +KYE ARKL I IRA Y D+ S++
Sbjct: 184 LASWTENVQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDD 680
RQ AVA Y ID+LALRAGNEKD+D
Sbjct: 243 IRQRAVALYFIDRLALRAGNEKDED 267
>gi|395145738|gb|AFN53309.1| DNA topoisomerase 1, partial [Crematogaster longispina]
Length = 267
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 184/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP +K Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPNIKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIHDLTKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K IP+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKASNIPKPPT-GHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|189094083|gb|ACD75869.1| topoisomerase I [Metrius contractus]
Length = 281
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 189/288 (65%), Gaps = 20/288 (6%)
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKD 711
RQ AVA Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++ K FDFLGKD
Sbjct: 3 RQRAVALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHISLHEQKDGKEYVTVFDFLGKD 62
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYN
Sbjct: 63 SIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMDGLTAKVFRTYN 122
Query: 772 ASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIED 830
AS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K H M +L EKI+
Sbjct: 123 ASWTLQQQLDELTNADDTLAEKILSYNRANRAVAILCNHQRSVPKGHQKSMEKLKEKIDQ 182
Query: 831 LKGVLKDLRVDL-DRAKKGKPPLMKDS---DGKRKRNLAPEALERKMAQTNAKIEKMERD 886
K + D++ + D K K +K+ D K+K ALER Q K+E E D
Sbjct: 183 KKENITDMQRQVKDAQKDAKHGSVKEKVVYDKKKK------ALERLRDQL-MKLEVQETD 235
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 236 ---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 280
>gi|395145924|gb|AFN53402.1| DNA topoisomerase 1, partial [Metapone madagascarica]
Length = 267
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 185/269 (68%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF++DWR+++ ++
Sbjct: 1 PYEPLPPSVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKAVFNTNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKIIDLAKCNFKEMHAYFVQKGEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD +P+ P G WKEV+HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPP-AGHKWKEVRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145926|gb|AFN53403.1| DNA topoisomerase 1, partial [Vollenhovia emeryi]
Length = 267
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 182/265 (68%), Gaps = 4/265 (1%)
Query: 418 LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHV-- 475
LP VK Y GKE+ L+ E EEVAT +A MLD DY K F NF+ DWR+++ ++
Sbjct: 5 LPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKTVFNNNFFQDWREVMTESERAK 64
Query: 476 IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNF 535
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK+GNF
Sbjct: 65 INDLFKCNFKEMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNF 124
Query: 536 RVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTW 595
++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN KD IP+ P G WKEV+HD VTW
Sbjct: 125 KIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPP-AGHKWKEVRHDPNVTW 183
Query: 596 LAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT 655
LA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S++
Sbjct: 184 LASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMR 242
Query: 656 RRQIAVATYLIDKLALRAGNEKDDD 680
RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 243 IRQRAVALYFIDKLALRAGNEKDED 267
>gi|381143881|gb|AFF58601.1| topoisomerase I, partial [Bembidion transparens]
Length = 272
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 184/278 (66%), Gaps = 14/278 (5%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 QLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 838 LRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
A+K +D+ G K + + ++ + + ++ K+E +++ K++
Sbjct: 181 -------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMKLEVQETDRDENKSI 233
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 234 ALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 271
>gi|381143677|gb|AFF58499.1| topoisomerase I, partial [Bembidion dentellum]
Length = 271
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 185/284 (65%), Gaps = 26/284 (9%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE-------D 830
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE D
Sbjct: 121 QLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 831 LKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTK 890
+ +KD + D AK G D K+K LER Q K+E ME D +
Sbjct: 181 AQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLERLKDQL-MKLEVMETD---R 227
Query: 891 EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 228 DENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 271
>gi|381143609|gb|AFF58465.1| topoisomerase I, partial [Bembidion (Zecillenus) sp. 1 DRM-2012]
Length = 271
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 182/278 (65%), Gaps = 14/278 (5%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 QLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 838 LRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
A+K +D+ G K + + ++ + + ++ K+E +++ K +
Sbjct: 181 -------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAI 233
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 234 ALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 271
>gi|395145922|gb|AFN53401.1| DNA topoisomerase 1, partial [Stenamma dyscheres]
Length = 267
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/269 (50%), Positives = 182/269 (67%), Gaps = 6/269 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y G+E+ L+ E EE+AT +A MLD DY K F NF+ DWR+ + ++
Sbjct: 1 PYEPLPPTVKFYYNGREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK I+ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG EK
Sbjct: 61 ERAKITDLSKCNFKEIHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPKMGKLKKR+ P D+ IN K +P+ P G WKEV+HD+
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPP-AGHKWKEVRHDS 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDD 680
++ RQ AVA Y IDKLALRAGNEKD+D
Sbjct: 239 KEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|381143669|gb|AFF58495.1| topoisomerase I, partial [Bembidion connivens]
Length = 269
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/273 (49%), Positives = 180/273 (65%), Gaps = 14/273 (5%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 QLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 838 LRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
A+K +D+ G K + + ++ + + ++ K+E +++ K +
Sbjct: 181 -------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLREQLIKLEVQETDRDENKAI 233
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 234 ALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 266
>gi|381143727|gb|AFF58524.1| topoisomerase I, partial [Bembidion impotens]
Length = 270
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/276 (49%), Positives = 181/276 (65%), Gaps = 14/276 (5%)
Query: 666 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVE 720
ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N V
Sbjct: 1 IDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVP 60
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL L
Sbjct: 61 VEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQL 120
Query: 781 NKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLR 839
++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 DELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIAD-- 178
Query: 840 VDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
A+K KD+ G K + + ++ + + ++ K+E +++ K +AL
Sbjct: 179 -----AQKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIAL 233
Query: 899 GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
GTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 234 GTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 269
>gi|426236003|ref|XP_004011964.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I, mitochondrial
[Ovis aries]
Length = 601
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 177/515 (34%), Positives = 259/515 (50%), Gaps = 53/515 (10%)
Query: 437 QEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQ 494
QEE A + ML +Y K F +N ++DWRK + + V+++L+ CDF + ++
Sbjct: 135 QEEAAAFYGKMLQHEYTTKEVFPDNSFSDWRKEMTAEERKVVKHLDRCDFTETHRHSADR 194
Query: 495 KEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 554
+K +S ++ LKEE+ K ++++ + I+DG +EK+G+F EP G G+HPKM +
Sbjct: 195 TASQKALSGGRRQKLKEEEEKLQQEFGYCILDGHREKIGSFETEPLVSLXGWGDHPKMER 254
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
LK+R+ P D+ +N +D +PE P G WKEV TV LA W + + KYV L
Sbjct: 255 LKRRVLPEDVVVNCSRDSAVPE-PPAGPRWKEVGCVRTVMRLAAWTENVQ-NLIKYVTLN 312
Query: 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG 674
S LKG+ D KYE A+ LK + IR+ Y S + RQ AVA Y IDK
Sbjct: 313 PGSKLKGERDWGKYEVAQHLKGVVGEIRSXYRTAXTSLEMRARQYAVALYFIDKGT--CA 370
Query: 675 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT 734
++ GCC+L V + + P S VN G +
Sbjct: 371 MPYGEEGGGHGGCCSLHVEHYQLHPE--------ASGSPDLVN----------GSGGWNR 412
Query: 735 GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKI 793
TA LN HL++ GLTA+V RTYNASI L G L + +A ++
Sbjct: 413 A------------TASLNRHLQDPRDGLTARVLRTYNASIMLQGQLQALPXAEDSIAAEL 460
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
Y AN+ A +C+HQRT KT + L +IE + + + + +L A
Sbjct: 461 LSYNEANRXCAFLCSHQRTAPKTFDKSVQMLQSQIEAKEQQVAEAKTELQEAWAD----- 515
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
S G + +P LE+K+ + ++ M KE+ K VALGTSK+NYLDPR+ V
Sbjct: 516 HTSQGDSR---SPLFLEKKLEEQLLRV-----SMXDKEESKQVALGTSKLNYLDPRVGVT 567
Query: 914 W-CKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
W CK+ EVP+EK++ K+ KF WA V +F F
Sbjct: 568 WCCKKFEVPVEKVY-KTQREKFTWAFHMVGEDFEF 601
>gi|381143847|gb|AFF58584.1| topoisomerase I, partial [Bembidion semicinctum]
Length = 264
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/271 (49%), Positives = 179/271 (66%), Gaps = 14/271 (5%)
Query: 665 LIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTV 719
ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N V
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEV 60
Query: 720 EVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 PVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQ 120
Query: 780 LNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 LDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD- 179
Query: 839 RVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVA 897
A+K +D+ G K + + ++ + + ++ K+E +++ K +A
Sbjct: 180 ------AQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLIKLEVQETDRDENKAIA 233
Query: 898 LGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
LGTSK+NYLDPRI+VAWCK+++VPIEKI+NK
Sbjct: 234 LGTSKLNYLDPRISVAWCKKYDVPIEKIYNK 264
>gi|381143891|gb|AFF58606.1| topoisomerase I, partial [Bembidion versicolor]
Length = 268
Score = 245 bits (625), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 179/272 (65%), Gaps = 14/272 (5%)
Query: 665 LIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTV 719
ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N V
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEV 60
Query: 720 EVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 PVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQ 120
Query: 780 LNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 LDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIAD- 179
Query: 839 RVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVA 897
A+K KD+ G K + + ++ + + ++ K+E +++ K +A
Sbjct: 180 ------AQKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIA 233
Query: 898 LGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
LGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 234 LGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 265
>gi|381143647|gb|AFF58484.1| topoisomerase I, partial [Bembidion (Furcacampa) cf. cognatum
DRM-2012]
Length = 265
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 179/272 (65%), Gaps = 14/272 (5%)
Query: 665 LIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTV 719
ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N V
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEV 60
Query: 720 EVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 PVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQ 120
Query: 780 LNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 LDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIAD- 179
Query: 839 RVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVA 897
A+K KD+ G K + + ++ + + ++ K+E +++ K +A
Sbjct: 180 ------AQKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIA 233
Query: 898 LGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
LGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 234 LGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 265
>gi|381143703|gb|AFF58512.1| topoisomerase I, partial [Bembidion frontale]
Length = 262
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/269 (49%), Positives = 177/269 (65%), Gaps = 14/269 (5%)
Query: 667 DKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEV 721
D+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N V V
Sbjct: 1 DRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPV 60
Query: 722 ELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
E V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL L+
Sbjct: 61 EKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 120
Query: 782 KGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
+ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 ELTNSDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQISD--- 177
Query: 841 DLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALG 899
A+K KD+ G K + + ++ + + ++ K+E +++ K +ALG
Sbjct: 178 ----AQKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIALG 233
Query: 900 TSKINYLDPRITVAWCKRHEVPIEKIFNK 928
TSK+NYLDPRI+VAWCK++EVPIEKI+NK
Sbjct: 234 TSKLNYLDPRISVAWCKKYEVPIEKIYNK 262
>gi|395145808|gb|AFN53344.1| DNA topoisomerase 1, partial [Crematogaster cf. chlorotica
BBB-2012]
Length = 259
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 131/261 (50%), Positives = 178/261 (68%), Gaps = 6/261 (2%)
Query: 416 PY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN 473
PY LP VK Y GKE+ L+ E EEVAT +A MLD DY KP F NF++DWR+++ ++
Sbjct: 1 PYEPLPPTVKFYYNGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTES 60
Query: 474 HV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEK 531
I +L C+FK ++ + ++ E++K M+ EEK+ +KE+ + +++Y + +DG KEK
Sbjct: 61 ERAKINDLSKCNFKEMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEK 120
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
+GNF++EPPGLFRGRGEHPK+GK+KKR+ P D+ IN KD IP+ P G WKE++HD
Sbjct: 121 IGNFKIEPPGLFRGRGEHPKIGKMKKRVLPEDVLINCSKDSNIPKPPT-GHKWKEIRHDP 179
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
VTWLA W + I + KYV L SS LKG+ D +KYE ARKL I IRA Y +D+ S
Sbjct: 180 NVTWLASWTENIQ-GQMKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKS 238
Query: 652 RDGTRRQIAVATYLIDKLALR 672
++ RQ AVA Y IDKLALR
Sbjct: 239 KEMRIRQRAVALYFIDKLALR 259
>gi|381143693|gb|AFF58507.1| topoisomerase I, partial [Bembidion farrarae]
Length = 263
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/270 (48%), Positives = 177/270 (65%), Gaps = 14/270 (5%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKI+ + + D
Sbjct: 121 QLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITD 180
Query: 838 LRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
A+K +D+ G K + + ++ + + ++ K+E +++ K +
Sbjct: 181 -------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMKLEVQETDRDENKAI 233
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
ALGTSK+NYLDPRI+VAWCK+++VPIEKI+
Sbjct: 234 ALGTSKLNYLDPRISVAWCKKYDVPIEKIY 263
>gi|189094077|gb|ACD75866.1| topoisomerase I [Macrogyrus oblongus]
Length = 263
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/267 (49%), Positives = 175/267 (65%), Gaps = 12/267 (4%)
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKD 711
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKD
Sbjct: 3 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDDKEYVVVFDFLGKD 62
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTAKVFRTYN
Sbjct: 63 SIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAIMNKHLNELMEGLTAKVFRTYN 122
Query: 772 ASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIED 830
AS TL L++ T D D VA KI Y RAN+ VAI+CNHQR+V K H M +L EKIE
Sbjct: 123 ASWTLQQQLDELTNDDDTVAEKILSYNRANRAVAILCNHQRSVPKGHQKTMEKLKEKIEQ 182
Query: 831 LKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTK 890
+ + +++ + A++ +G K + + ++ + + ++ ++E K
Sbjct: 183 KREQINEMQRQVKDAQRDA------RNGSVKEKMVFDKKKKALEKLKEQMIRLEVQETDK 236
Query: 891 EDLKTVALGTSKINYLDPRITVAWCKR 917
++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 237 DENKSIALGTSKLNYLDPRISVAWCKK 263
>gi|189094073|gb|ACD75864.1| topoisomerase I [Amphizoa lecontei]
Length = 268
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/272 (47%), Positives = 177/272 (65%), Gaps = 12/272 (4%)
Query: 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKD 711
RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKD
Sbjct: 3 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDDKEFVVVFDFLGKD 62
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRT+N
Sbjct: 63 SIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTQIMNKHLNELMDGLTAKVFRTFN 122
Query: 772 ASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIED 830
AS TL L++ T D ++ KI Y RAN+ VAI+CNHQR+V K H M +L EKI+
Sbjct: 123 ASYTLQQQLDELTNADDTLSEKILSYNRANRAVAILCNHQRSVPKGHQKTMEKLKEKIDQ 182
Query: 831 LKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTK 890
+ + +++ + A++ G K + + ++ + + ++ K+E K
Sbjct: 183 KREQITEMQKQVKDAQRDAQH------GSVKEKVVLDKKKKGLERLKDQLVKLEVQETDK 236
Query: 891 EDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
++ K++ALGTSK+NYLDPRI+VAWCK++EVPI
Sbjct: 237 DENKSIALGTSKLNYLDPRISVAWCKKYEVPI 268
>gi|381143723|gb|AFF58522.1| topoisomerase I, partial [Bembidion humboldtense]
Length = 260
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 175/267 (65%), Gaps = 14/267 (5%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 QLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIAD 180
Query: 838 LRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
A+K +D+ G K + + ++ + + ++ K+E +++ K++
Sbjct: 181 -------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKSI 233
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIE 923
ALGTSK+NYLDPRI+VAWCK+++VPIE
Sbjct: 234 ALGTSKLNYLDPRISVAWCKKYDVPIE 260
>gi|381143851|gb|AFF58586.1| topoisomerase I, partial [Bembidion sexfoveatum]
Length = 260
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 175/267 (65%), Gaps = 14/267 (5%)
Query: 664 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNT 718
Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y N
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 779 MLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKIE + + D
Sbjct: 121 QLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 838 LRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTV 896
A+K +D+ G K + + ++ + + ++ K+E +++ K++
Sbjct: 181 -------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKSI 233
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIE 923
ALGTSK+NYLDPRI+VAWCK+++VPIE
Sbjct: 234 ALGTSKLNYLDPRISVAWCKKYDVPIE 260
>gi|12851114|dbj|BAB28946.1| unnamed protein product [Mus musculus]
Length = 295
Score = 237 bits (605), Expect = 2e-59, Method: Composition-based stats.
Identities = 137/291 (47%), Positives = 186/291 (63%), Gaps = 13/291 (4%)
Query: 656 RRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLG 709
+RQ+AVA Y IDKLALR GNEK++ E ADTVGCC+L+V ++ P + ++ DFLG
Sbjct: 3 KRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLHAPAGGQEHVVELDFLG 62
Query: 710 KDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRT 769
KDSI+Y N V VE V++ + F K DDLFD L T+ LN HL++LM GLTAKVFRT
Sbjct: 63 KDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRT 122
Query: 770 YNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKI 828
YNAS+TL L T + V K+ Y RAN+ VA++CNHQR V KT M L +KI
Sbjct: 123 YNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKI 182
Query: 829 EDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMK 888
E K + + +V+L +A+ L D K K L +R++ + ++ ++
Sbjct: 183 ETKKAQVAEAQVELQKAETD---LRMRGDSKPKSFLQK---QRRLLKLEEQLARLCAKAT 236
Query: 889 TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
KE+ K VALGT+K+NYLDPRI++AWCKR VP+EKI+NK+ +FAWA +
Sbjct: 237 DKEENKQVALGTAKLNYLDPRISIAWCKRFGVPVEKIYNKTQRERFAWAFN 287
>gi|442749081|gb|JAA66700.1| Putative dna topoisomerase i [Ixodes ricinus]
Length = 306
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/290 (47%), Positives = 189/290 (65%), Gaps = 21/290 (7%)
Query: 669 LALRAGNEKDDDE-ADTVGCCTLKVGNVECIPPNK------LKFDFLGKDSIQYVNTVEV 721
LALRAGNEK++ E ADTVGCC+L+V ++ + +K ++FDFLGKDSI+YVN V V
Sbjct: 26 LALRAGNEKEEGETADTVGCCSLRVEHL-TLHDSKDGKEFVVEFDFLGKDSIRYVNAVPV 84
Query: 722 ELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
E V++ + F KK DDLFD+L+T+ LN HL ELM GLTAKVFRTYNAS TL L
Sbjct: 85 EKRVFRNLKLFMENKKPADDLFDRLNTSILNKHLNELMEGLTAKVFRTYNASKTLQEQLE 144
Query: 782 KGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
T D + K+ Y RAN+ VAI+CNHQR V KT QM L +K+E+ + ++ +
Sbjct: 145 LLTEADMSLPEKMLAYNRANRAVAILCNHQRAVPKTFDKQMENLQKKMEEKEAQIRQCKK 204
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERK---MAQTNAKIEKMERDMKTKEDLKTVA 897
+L + K D + R + LERK M Q +++K+E KE+ K +A
Sbjct: 205 ELKQHK-------SDYNNSRTEK-DKQLLERKKKRMQQLEDQMKKLEVQATDKEENKQIA 256
Query: 898 LGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
LGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+++ P+++F
Sbjct: 257 LGTSKLNYLDPRISVAWCKKWDVPIDKIYNKTQRDKFRWAIEMAGPDYKF 306
>gi|195385739|ref|XP_002051562.1| GJ16237 [Drosophila virilis]
gi|194148019|gb|EDW63717.1| GJ16237 [Drosophila virilis]
Length = 557
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 275/571 (48%), Gaps = 82/571 (14%)
Query: 381 IKNSQYSKSTKMLPGSGDGQK-KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQ 437
++ Q S S ++ G K KW TL HNG +FP Y LP V LY + LT +
Sbjct: 45 LRPRQSSSSVQIQCCEGSTSKVKWQTLEHNGPLFPGAYERLPENVHFLYDNCPIELTEQA 104
Query: 438 EEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQ--NLEGCDFKPIYDWHQEQK 495
EEVAT +A +L T +++ +F ENF+ D+R L + + + C+F+ I+ + +EQ+
Sbjct: 105 EEVATFYAKVLGTPFVELSEFNENFFKDFRSCLSVEQRLHFTSFDLCNFQKIHQYLEEQQ 164
Query: 496 EKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGR-GEHPKMGK 554
E + Q EE +E+Y + +DG + ++ FR++PPGL R G MG
Sbjct: 165 EARSQQELEE-----------DERYGYCYIDGERHRINQFRIKPPGLCCPRKGYSLTMGM 213
Query: 555 LKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA 614
++ R+ P DI IN + P P PG W++V HD +V+WL W+D ++ + YV
Sbjct: 214 IRPRVLPEDIMINCDEYAEPPA-PPPGHRWRQVVHDRSVSWLYSWHDLVSGNTY-YVRAR 271
Query: 615 ASSSLKGQSD-REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
S + + R + E AR+L+ ++ SIR Y + + S RQ +VA Y ID+LA+
Sbjct: 272 IDQSKRYRLPLRNQLETARRLQQHLPSIRREYRQLWSSDQWLVRQRSVALYCIDQLAMTC 331
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKA 728
+D ++ D V C L+V N++ P N ++ + + +V V+ V+
Sbjct: 332 ---EDPEQPDKVTLCDLRVENLQLHPRLAGKKNVVRLQARKSNRQRVYRSVCVQPEVFYN 388
Query: 729 IGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD 788
+ F +GK+ ND + ++L T LN HL+ LM GLT+ +F NAS L+ L +
Sbjct: 389 LRVFVSGKEPNDLVLEELTTQLLNEHLEYLMDGLTSHIFCICNASQLLEQRLKEVPRKAS 448
Query: 789 VAVKIDVYQRANKEVAIIC-NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 847
+ V++ Y +A KEV C N QR V+ + + RLT
Sbjct: 449 LTVQLLAYNQALKEVHSFCSNRQRNVAPLPAPKSFRLT---------------------- 486
Query: 848 GKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLD 907
+RN E +R +K+ L T L + + YLD
Sbjct: 487 -------------RRNSTEE----------------QRLLKSI-SLHTKPLVEATLIYLD 516
Query: 908 PRITVAWCKRHEVPIEKIFNKSLLA-KFAWA 937
PRIT++WC R ++PI I+ S + K WA
Sbjct: 517 PRITISWCLRCKIPISAIYMSSAIRKKLIWA 547
>gi|213402109|ref|XP_002171827.1| DNA topoisomerase I [Schizosaccharomyces japonicus yFS275]
gi|211999874|gb|EEB05534.1| DNA topoisomerase I [Schizosaccharomyces japonicus yFS275]
Length = 654
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 176/273 (64%), Gaps = 15/273 (5%)
Query: 339 IPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGD 398
+ + + MK+SA S K S+ + A+ +S S I K +N + LP D
Sbjct: 183 MEVDEDMKDSALSSKHSIAKSEVASPKMSGS---IRSSPKTEEENGDFKWWETDLP---D 236
Query: 399 GQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKP 456
G KKW TL HNGV+FPP Y LP VKMLY GK ++L P EEVA F +L++D+ Q P
Sbjct: 237 G-KKWNTLEHNGVMFPPEYEPLPSHVKMLYNGKPIDLPPAAEEVAGFFGALLESDHAQNP 295
Query: 457 KFRENFWNDWRKL-----LGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKE 511
F++NF+ D++ + + + + CDF+P++++ + KE KK MS EEKK LK+
Sbjct: 296 TFQKNFFRDFQAVCKEAGMKSADIPKEFNSCDFRPMFEYFESLKEAKKNMSKEEKKELKK 355
Query: 512 EKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
+K ++EEK+ W ++DG KEKVGNFR+EPPGLFRGRG HPK G LK+R+ P ITINIGK
Sbjct: 356 KKEEEEEKFKWCLLDGRKEKVGNFRIEPPGLFRGRGSHPKTGTLKRRVYPEQITINIGKG 415
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPIN 604
+PE P+PG W EV+HD+ VTWLA W++ +N
Sbjct: 416 AKVPE-PLPGHKWAEVRHDDQVTWLAMWHENVN 447
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 867 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E LE+++ + + +I+ M + K++ KT ALGTSKINY+DPR+T + CKR +PIEK+F
Sbjct: 575 EQLEKRLIKMDERIKVMSNSIIDKDENKTTALGTSKINYIDPRLTFSLCKRENIPIEKLF 634
Query: 927 NKSLLAKFAWAMDV 940
+K++ KF WA D
Sbjct: 635 SKTIRDKFNWAADT 648
>gi|381143593|gb|AFF58457.1| topoisomerase I, partial [Asaphidion rossii]
Length = 260
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 172/266 (64%), Gaps = 12/266 (4%)
Query: 662 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYV 716
A Y ID+LALRAGNEKD+D+ADTVGCC+L+V ++E K FDFLGKDSI+Y
Sbjct: 1 ALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYY 60
Query: 717 NTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 61 NEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTL 120
Query: 777 DGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVL 835
L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EKI+ + +
Sbjct: 121 QQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIDQKREQI 180
Query: 836 KDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKT 895
D + L A++ G K + + ++ + + ++ K+E +++ K
Sbjct: 181 TDAQKQLKDAQRDAKH------GSVKEKVVYDKKKKMLEKLKEQLVKLEVLETDRDENKA 234
Query: 896 VALGTSKINYLDPRITVAWCKRHEVP 921
+ALGTSK+NYLDPRI+VAWCK+++VP
Sbjct: 235 IALGTSKLNYLDPRISVAWCKKYDVP 260
>gi|253723032|pdb|1OIS|A Chain A, Yeast Dna Topoisomerase I, N-Terminal Fragment
Length = 223
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 155/222 (69%), Gaps = 10/222 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ + P F+
Sbjct: 4 KWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQ 63
Query: 460 ENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
+NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK ++ E+
Sbjct: 64 KNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLER 123
Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
K EE Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+ KD P
Sbjct: 124 EKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAP 183
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
+P P G W E++HDNTV WLA W + I FKYV LAA
Sbjct: 184 VPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAA 223
>gi|47937947|gb|AAH71418.1| Top1l protein [Danio rerio]
Length = 469
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 159/252 (63%), Gaps = 6/252 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P EEVAT F+ MLD +Y K FR
Sbjct: 209 KWKFLEHKGPVFAPPYEPLPSNVKFYYDGKHMKLSPNAEEVATFFSKMLDHEYTTKDIFR 268
Query: 460 ENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + I +L CDF + ++ + Q E +K M+ EEK +KEE +
Sbjct: 269 KNFFKDWRKEMTSEEKSKITDLNKCDFSNMSEYFKAQSEARKAMTKEEKLKIKEENERIL 328
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD P
Sbjct: 329 QEYGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKHP-T 387
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 388 PPPGTKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 446
Query: 638 IHSIRAAYTKDF 649
+ IR+ Y D+
Sbjct: 447 VDRIRSQYRDDW 458
>gi|354496758|ref|XP_003510492.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Cricetulus
griseus]
gi|344255602|gb|EGW11706.1| DNA topoisomerase I, mitochondrial [Cricetulus griseus]
Length = 454
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 669 LALRAGNEKDDDE-ADTVGCCTLKVGNVECI-----PPNKLKFDFLGKDSIQYVNTVEVE 722
LALR GNEK++ E ADTVGCC+L V +V + ++ DFLGKDSI+Y N V VE
Sbjct: 175 LALRTGNEKEEGETADTVGCCSLPVEHVRLHGKADGQEHVVELDFLGKDSIRYNNRVTVE 234
Query: 723 LPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782
V++ + F K D+LFD L TA LN HL+ LM GLTA+VFRTYNAS+TL L
Sbjct: 235 KLVFQNLQHFMEDKDPGDNLFDALTTASLNKHLQGLMEGLTARVFRTYNASVTLQEQLRV 294
Query: 783 GT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVD 841
T + + K+ Y RAN+ VAI+CNHQR + KT M +L +KIE K + + +V+
Sbjct: 295 LTRAEDSLTSKVLAYNRANRAVAILCNHQRAIPKTFEKSMQKLQQKIETKKAQVTEAQVE 354
Query: 842 LDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTS 901
L+ K K L K K L + K+ + A++ K D KE+ K VALGT+
Sbjct: 355 LE---KSKADLRTRGGSKSKSFLRKQQRLLKLEEQLARLHKKATD---KEENKQVALGTA 408
Query: 902 KINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
K+NYLDPRI++AWCKR VPIEKI++K+ +FAWA + D +F F
Sbjct: 409 KLNYLDPRISIAWCKRFGVPIEKIYHKTQRERFAWAFNRADKDFEF 454
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV Y GK V L+ EEVAT++ ML + K F+
Sbjct: 42 KWRQLEHKGPYFTPAYEPLPDGVHFFYDGKPVKLSVAAEEVATLYGKMLHLECATKEVFQ 101
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ DWRK + + +I +L+ CDF I+ E+ E ++ + E+K+ + ++ E
Sbjct: 102 RNFFRDWRKEMTAEERKLITHLDKCDFVEIHKHFMEKTEARRTLPREKKQVFQNLQHFME 161
Query: 518 EK 519
+K
Sbjct: 162 DK 163
>gi|351698448|gb|EHB01367.1| DNA topoisomerase I, mitochondrial [Heterocephalus glaber]
Length = 716
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 179/569 (31%), Positives = 245/569 (43%), Gaps = 170/569 (29%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV+ + LT E+
Sbjct: 47 KWRQLEHRGPYFAPGYEPLPEGVRASFV---TELTVEE---------------------- 81
Query: 460 ENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA----------- 508
+I++L+ CDF I+ ++ + + EEK+
Sbjct: 82 -------------RCLIKHLDKCDFTEIHRHFVDKAVAWRALPREEKQVGLLGALCKEWK 128
Query: 509 -----LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
LKEE K E+++ + I+DG EK+GNF+ EPPGLF G G+HPKMG LK+RI+P D
Sbjct: 129 WLVGKLKEEAEKLEQEFGYCILDGYLEKIGNFKAEPPGLFCGCGDHPKMGMLKRRIRPED 188
Query: 564 ITINIGK-----------DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVF 612
+ IN K D IPE P G WKEV+ D TVTWLA W + + KY+
Sbjct: 189 VVINCSKCADQAARLSWRDSKIPE-PPAGHQWKEVRSDKTVTWLAAWTENVQ-NSIKYIM 246
Query: 613 LAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
L SS L KLALR
Sbjct: 247 LNPSSKL------------------------------------------------KLALR 258
Query: 673 AGNEKDDDE-ADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
GNEK++ E ADTVGCC+L+V +V +L D G V++ +
Sbjct: 259 TGNEKEEGETADTVGCCSLQVEHV------RLHVDANGHKH------------VFQNLQL 300
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV 791
F K+ DDLFDKL K R + + +A
Sbjct: 301 FMKNKEPGDDLFDKL-----------------TKQLRVVTRA------------EDSIAT 331
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
KI Y RAN+ VAI HQ+ + KT M L KI+ K + + + +L +A+
Sbjct: 332 KILAYNRANRVVAIYRGHQQAIPKTFEKSMRNLRTKIQAKKTQVAEAQGELRKAEVDH-- 389
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
DGK L E +R + + ++ + KE+ K VALG SK+NYLDPRI+
Sbjct: 390 -RIKGDGKSTSIL--EKKQRLLRKLEEQLVHLSTRAIDKEENKQVALGASKLNYLDPRIS 446
Query: 912 VAWCKRHEVPIEKIFNKSLLAKFAWAMDV 940
AWC+R VP+EKI+NK+ KFAWA+D+
Sbjct: 447 TAWCERFGVPMEKIYNKTQREKFAWALDM 475
>gi|119602665|gb|EAW82259.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_a [Homo sapiens]
gi|119602667|gb|EAW82261.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_a [Homo sapiens]
gi|119602672|gb|EAW82266.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_a [Homo sapiens]
Length = 291
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 155/228 (67%), Gaps = 4/228 (1%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDK+ ++
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKVGVQ 226
>gi|119602669|gb|EAW82263.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_d [Homo sapiens]
Length = 290
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 152/224 (67%), Gaps = 4/224 (1%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSE 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 EKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
EK+ LKEE K ++++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDK 668
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDK
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDK 222
>gi|328865609|gb|EGG13995.1| DNA topoisomerase I [Dictyostelium fasciculatum]
Length = 881
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/205 (53%), Positives = 150/205 (73%), Gaps = 2/205 (0%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL HNG +FPP Y PHG+K+ Y GK + LTP QEEVAT +A L+T+++QK +FR+N
Sbjct: 399 KWETLTHNGPVFPPDYEPHGIKLYYDGKALELTPIQEEVATFYATYLETEHVQKEQFRKN 458
Query: 462 FWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
F+ ++R LL + V+++ E DF I+ + +KEK+ ++EEKK K+EK K EK
Sbjct: 459 FFAEFRALLSTEQQKVVKSFELLDFSKIHKFLVARKEKRLARTTEEKKEEKDEKEKLREK 518
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPI 579
Y +A+VDG K+K+GN+ VEPPGLF GRG+HPK G LK RI PSD+TINIG + +PE PI
Sbjct: 519 YGYAMVDGHKQKIGNYMVEPPGLFLGRGKHPKTGMLKNRIYPSDVTINIGSEADVPEPPI 578
Query: 580 PGESWKEVKHDNTVTWLAFWNDPIN 604
G +WK+V H+NTVTWL+FW + +N
Sbjct: 579 KGYNWKQVIHNNTVTWLSFWKENVN 603
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 128/232 (55%), Gaps = 44/232 (18%)
Query: 758 LMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKT 816
LM GL+AKVFRTYNASITL L K D + + KI Y RAN+EVAI+CNHQR+ KT
Sbjct: 651 LMTGLSAKVFRTYNASITLQNELAKMPDDLETIDEKILFYTRANREVAILCNHQRSAPKT 710
Query: 817 HSAQMSRLTEKIEDLKGVLKDLRVDLDRA--KKG-------KPPLMKDSDGK-------- 859
H+ M R KI++L + DL++ KKG K +MK D +
Sbjct: 711 HTESMGRFQAKIDELDDRKRLAAHDLNQLNEKKGEALSSSEKKKIMKREDERLKAAIQKA 770
Query: 860 -----------------------RKRNLAPEA--LERKMAQTNAKIEKMERDMKTKEDLK 894
R R L+ + LE K+A +I+K E K++
Sbjct: 771 IETNKDAEKTDEEVRQEAETKFERSRKLSDQVDKLELKIASLEEQIKKQELTKTGKDETS 830
Query: 895 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
TVALGTSKINYLDPRIT AWCK+ EVPIEKIF+K+L KF W+ DVD ++ F
Sbjct: 831 TVALGTSKINYLDPRITAAWCKKMEVPIEKIFSKTLRDKFPWS-DVDEDWEF 881
>gi|76156808|gb|AAX27935.2| SJCHGC03473 protein [Schistosoma japonicum]
Length = 238
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 151/223 (67%), Gaps = 6/223 (2%)
Query: 613 LAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALR 672
L SS LKG+ D +KYE AR L I IRA Y DF ++ RQ AVA Y IDKLALR
Sbjct: 1 LNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHKEMRIRQRAVALYFIDKLALR 60
Query: 673 AGNEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYK 727
AGNEKD+DEADTVGCC+L+ +++ P ++FDFLGKDSI+Y N+V V V+K
Sbjct: 61 AGNEKDEDEADTVGCCSLRYEHIKLHEELNGQPYVVEFDFLGKDSIRYQNSVSVPKRVFK 120
Query: 728 AIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-D 786
+ F KK+NDDLFD+L+T+ LN +L+ELM GLTAKVFRTYNAS TL+ L + T D
Sbjct: 121 NVKLFLKNKKENDDLFDRLNTSVLNQYLRELMDGLTAKVFRTYNASRTLEEQLERLTNPD 180
Query: 787 GDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
K+ Y RAN+ VA++CNHQR+V K+ + M L +K++
Sbjct: 181 DPPHAKLLAYNRANRAVAVLCNHQRSVPKSFAKSMENLQKKVQ 223
>gi|386875253|ref|ZP_10117437.1| eukaryotic DNA topoisomerase I, catalytic core, partial [Candidatus
Nitrosopumilus salaria BD31]
gi|386806938|gb|EIJ66373.1| eukaryotic DNA topoisomerase I, catalytic core, partial [Candidatus
Nitrosopumilus salaria BD31]
Length = 311
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 183/306 (59%), Gaps = 14/306 (4%)
Query: 484 FKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQEEKYMWAIVDGVKEKVGNFRVEP 539
F Y ++K+ ++ M+ EEKK+L KE + K + KY AI+DG + +VGN+ EP
Sbjct: 6 FSNAYKIVDKEKDLREMMTKEEKKSLAAKRKELREKLKAKYGIAIMDGKEVEVGNYMAEP 65
Query: 540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
PG+F GRGEHP GK K R+ D+T+N+GK+ +PE +W ++ HD WLA W
Sbjct: 66 PGIFIGRGEHPLRGKWKPRVTTKDVTLNLGKEAKVPEG-----NWGKIIHDKDSMWLASW 120
Query: 600 NDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQI 659
D + K KYV+LA ++ LK D+EKYEKA KL I I+ KD S D +I
Sbjct: 121 MDFLTQKR-KYVWLADTAGLKQDRDKEKYEKAVKLAKEIDKIKDRIVKDMKSNDPKMSRI 179
Query: 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 719
A A YLI + A+R G+EKD DEADTVG TL+ +++ I PN ++FDFLGKDS+++ V
Sbjct: 180 ATACYLIYRTAMRVGDEKDPDEADTVGATTLRKEHIK-ITPNAIEFDFLGKDSVRWQEKV 238
Query: 720 EVE---LPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
E + + + KK D++FD + + +NA+ ++ GLTAKVFRTY A+ +
Sbjct: 239 IAEGHDKQFQENLKKLVENKKPKDEIFDDITSRHVNAYYSSIVKGLTAKVFRTYLATTVV 298
Query: 777 DGMLNK 782
L K
Sbjct: 299 KDXLVK 304
>gi|304273985|gb|ADM18430.1| topoisomerase I [Philonthus splendens]
Length = 241
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 157/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELMPGLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTALMNKHLNELMPGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T +GD ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEGDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G D K+K LER Q
Sbjct: 131 LKEKIDQKREAIADAEHQVKDAQRD---AKHGSVKEKVVYDKKKK------MLERLREQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|378793086|gb|AFC56767.1| topoisomerase I, partial [Nebria crassicornis]
Length = 252
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 164/258 (63%), Gaps = 12/258 (4%)
Query: 686 GCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND 740
GCC+L+V ++ K FDFLGKDSI+Y N V VE V+K + F K D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 741 DLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRA 799
DLFD+L+TA +N HL ELM GLTAKVFRTYNAS TL L++ T D VA KI Y RA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSVAEKILSYNRA 120
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+ VAI+CNHQR+V K+H M +L EKI+ + ++D++ + A++ G
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENVQDMQRQVKDAQRDAKH------GS 174
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
K + + ++ + + ++ K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++
Sbjct: 175 VKEKVVYDKKKKTLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYD 234
Query: 920 VPIEKIFNKSLLAKFAWA 937
VPIEK++NK+ KF WA
Sbjct: 235 VPIEKVYNKTQRDKFRWA 252
>gi|378793088|gb|AFC56768.1| topoisomerase I, partial [Nebria gyllenhali]
gi|378793090|gb|AFC56769.1| topoisomerase I, partial [Nebria nivalis]
gi|378793092|gb|AFC56770.1| topoisomerase I, partial [Nebria nivalis]
gi|378793094|gb|AFC56771.1| topoisomerase I, partial [Nebria baicalica]
gi|378793096|gb|AFC56772.1| topoisomerase I, partial [Nebria subdilatata]
gi|378793098|gb|AFC56773.1| topoisomerase I, partial [Nebria gouleti]
gi|378793100|gb|AFC56774.1| topoisomerase I, partial [Nebria gouleti]
Length = 252
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 164/258 (63%), Gaps = 12/258 (4%)
Query: 686 GCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND 740
GCC+L+V ++ K FDFLGKDSI+Y N V VE V+K + F K D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 741 DLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRA 799
DLFD+L+TA +N HL ELM GLTAKVFRTYNAS TL L++ T D +A KI Y RA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSMAEKILSYNRA 120
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+ VAI+CNHQR+V K+H M +L EKI+ + ++D++ + A++ G
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENIQDMQRQVKDAQRDAKH------GS 174
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
K + + ++ + + ++ K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++
Sbjct: 175 VKEKVVYDKKKKTLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYD 234
Query: 920 VPIEKIFNKSLLAKFAWA 937
VPIEK++NK+ KF WA
Sbjct: 235 VPIEKVYNKTQRDKFRWA 252
>gi|304273973|gb|ADM18424.1| topoisomerase I [Nudobius pugetanus]
Length = 239
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 151/234 (64%), Gaps = 7/234 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDTVAEKILAYNRANRAVAILCNHQRAVPKGHEKSMGK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + D + AK+ + G K L + ++++ + ++ K+
Sbjct: 131 LKEKIEAKRDAISDAERQVGDAKR------EAKHGSVKEKLVYDKKKKQLERLRDQLAKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA 937
E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF WA
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKFRWA 238
>gi|378793102|gb|AFC56775.1| topoisomerase I, partial [Nebria hudsonica]
gi|378793104|gb|AFC56776.1| topoisomerase I, partial [Nebria lacustris]
gi|378793106|gb|AFC56777.1| topoisomerase I, partial [Nebria lacustris]
gi|378793110|gb|AFC56779.1| topoisomerase I, partial [Nebria lacustris]
gi|378793112|gb|AFC56780.1| topoisomerase I, partial [Nebria lacustris]
gi|378793114|gb|AFC56781.1| topoisomerase I, partial [Nebria lacustris]
gi|378793116|gb|AFC56782.1| topoisomerase I, partial [Nebria lacustris]
gi|378793118|gb|AFC56783.1| topoisomerase I, partial [Nebria lacustris]
gi|378793120|gb|AFC56784.1| topoisomerase I, partial [Nebria lacustris]
gi|378793122|gb|AFC56785.1| topoisomerase I, partial [Nebria lacustris]
gi|378793124|gb|AFC56786.1| topoisomerase I, partial [Nebria lacustris]
gi|378793126|gb|AFC56787.1| topoisomerase I, partial [Nebria lacustris]
gi|378793128|gb|AFC56788.1| topoisomerase I, partial [Nebria bellorum]
gi|378793130|gb|AFC56789.1| topoisomerase I, partial [Nebria bellorum]
gi|378793132|gb|AFC56790.1| topoisomerase I, partial [Nebria bellorum]
Length = 252
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 164/258 (63%), Gaps = 12/258 (4%)
Query: 686 GCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND 740
GCC+L+V ++ K FDFLGKDSI+Y N V VE V+K + F K D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 741 DLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRA 799
DLFD+L+TA +N HL ELM GLTAKVFRTYNAS TL L++ T D +A KI Y RA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSMAEKILSYNRA 120
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+ VAI+CNHQR+V K+H M +L EKI+ + ++D++ + A++ G
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENIQDMQRQVKDAQRDAKH------GS 174
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
K + + ++ + + ++ K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++
Sbjct: 175 VKEKVVYDKKKKTLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYD 234
Query: 920 VPIEKIFNKSLLAKFAWA 937
VPIEK++NK+ KF WA
Sbjct: 235 VPIEKVYNKTQRDKFRWA 252
>gi|378793084|gb|AFC56766.1| topoisomerase I, partial [Nebria brevicollis]
Length = 252
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 164/258 (63%), Gaps = 12/258 (4%)
Query: 686 GCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND 740
GCC+L+V ++ K FDFLGKDSI+Y N V VE V+K + F K D
Sbjct: 1 GCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 741 DLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRA 799
DLFD+L+TA +N HL ELM GLTAKVFRTYNAS TL L++ T D +A KI Y RA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSLAEKILSYNRA 120
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+ VAI+CNHQR+V K+H M +L EKIE + ++D++ + A++ G
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIEQKRENVQDMQRQVKDAQRDAKH------GS 174
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
K + + ++ + + ++ K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++
Sbjct: 175 VKEKVVYDKKKKSLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYD 234
Query: 920 VPIEKIFNKSLLAKFAWA 937
+PIEK++N++ KF WA
Sbjct: 235 IPIEKVYNRTQRDKFRWA 252
>gi|304273937|gb|ADM18406.1| topoisomerase I [Atanygnathus sp. SC-2010]
Length = 241
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 149/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N + VE V+K + F K DDLFD+L T LN HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNELPVEKRVFKNLQLFIENKSAGDDLFDRLXTTVLNKHLNELMDGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL LNK T D +V KI Y RAN+ VAI+CNHQR + K+H M
Sbjct: 71 KVFRTYNASFTLQEQLNKLTNPDDNVQAKILSYNRANRAVAILCNHQRAIPKSHQKSMEA 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ K + D + + A++ DG K + + +R + + ++ K+
Sbjct: 131 LKEKIKSKKEAITDAQRQAEDARRAAK------DGSAKNKIGYDKKKRMLDRLKEQLNKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E K++ KT+ALGTSK+NYLDPRITVAWCK+ VP++KI+NK+ KF WA+D
Sbjct: 185 EIQETDKDENKTIALGTSKLNYLDPRITVAWCKKFGVPVDKIYNKTQRDKFRWAID 240
>gi|304273957|gb|ADM18416.1| topoisomerase I [Hadrotes crassus]
Length = 241
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 157/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K+ LER Q
Sbjct: 131 LKEKIETKRDTIADAERXVKDAQRD---AKHGSVKEKVIYDKKKKQ------LERLREQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273969|gb|ADM18422.1| topoisomerase I [Neobisnius occidentoides]
Length = 239
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 151/235 (64%), Gaps = 9/235 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDS +Y N V VE V+K + F K DDLFD+L+TA +N HL ELMPGLTA
Sbjct: 11 FDFLGKDSXRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTALMNKHLNELMPGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLEKLTNADDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + + +R KG KD G K + + ++ +A+ ++ K+
Sbjct: 131 LKEKIEAKREAI----AEAERQVKG----CKDKHGSVKEKVVYDKKKKMLARLREQLTKL 182
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+
Sbjct: 183 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAI 237
>gi|304273967|gb|ADM18421.1| topoisomerase I [Nausicotus spectabilis]
Length = 241
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMDNKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDTVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMDK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + ++ D + A+K G K + + ++++ + ++ K+
Sbjct: 131 LKEKIDSKRDIIADAERQVKDAEKDARR------GSVKEKVVYDKKKKQLERLRDQLAKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|393794779|ref|ZP_10378143.1| 2-alkenal reductase, partial [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 404
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 142/404 (35%), Positives = 216/404 (53%), Gaps = 23/404 (5%)
Query: 548 EHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKE 607
+HP G+ K RI D+T+N+GK+ +PE +W ++ HDN WLA W D + K
Sbjct: 1 DHPLRGRWKPRITAKDVTLNLGKEAKVPEG-----NWGKIVHDNDSMWLAGWTDYLTEKR 55
Query: 608 FKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLID 667
KYV+LA ++ LK D+ KYEKA KL I I+ KD ++D +IA YLI
Sbjct: 56 -KYVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKNKDPKISRIATVCYLIY 114
Query: 668 KLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVE---LP 724
+ A+R G+EKD DEADTVG TL+ ++ I + ++FDFLGKDS+++ TV+ E
Sbjct: 115 RTAMRVGDEKDPDEADTVGATTLRKEHIN-ITDDAIEFDFLGKDSVRWQETVKAEGNDKQ 173
Query: 725 VYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT 784
+ + + KK D++F+ + + +NA+ ++ GLTAKVFRTY A+ + L +
Sbjct: 174 FQENLKKLIQNKKPKDEIFEDITSRHVNAYYSSIVSGLTAKVFRTYLATTMVKNYLKEHD 233
Query: 785 GDGDVAVKIDVYQR--ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD--LRV 840
+Y AN E AI+CNH+RT+ KT+ L K + LK + KD
Sbjct: 234 NVKSKTPNEKLYHAKLANLEAAIMCNHKRTIPKTYE---DTLENKRQTLKNISKDQPWTK 290
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAP-----EALERKMAQTNAKIEKMERDMKTKEDLKT 895
L+ KK + K +D ++K E ++++ + ++EK++ + E K
Sbjct: 291 TLEALKKAESMEAK-TDAQKKNKAKKIKTLNEQIKKQKEKHKERVEKLQLQIDLSEKTKD 349
Query: 896 VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
LGTS NY+DPRI AW V EK++ +L KF W +
Sbjct: 350 YNLGTSLRNYIDPRIFKAWTDEVGVEWEKLYTAALQKKFLWVQN 393
>gi|304273975|gb|ADM18425.1| topoisomerase I [Ocypus olens]
Length = 241
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 157/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K+ LER Q
Sbjct: 131 LKEKIETKRDNIADAERQVKDAQRD---AKHGSVKEKVIYDKKKKQ------LERLREQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304274007|gb|ADM18441.1| topoisomerase I [Tasgius morsitans]
Length = 241
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + D + A++ G K + + ++++ + ++ K+
Sbjct: 131 LKEKIETKRDTIADAERQVKDAQRDAKH------GSVKEKVVYDKKKKQLERLREQLAKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF WA D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRWAXD 240
>gi|304273955|gb|ADM18415.1| topoisomerase I [Hadropinus fossor]
Length = 241
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 156/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K+ LER Q
Sbjct: 131 LKEKIETKRDTIADAERQVKDAQRD---AKHGSVKEKVIYDKKKKQ------LERLREQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304274009|gb|ADM18442.1| topoisomerase I [Tasgius pedator]
Length = 241
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 157/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G D K+K+ LER Q
Sbjct: 131 LKEKIDTKRDNIADAERQVKDAQRD---AKHGSVKEKVLYDKKKKQ------LERLREQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273931|gb|ADM18403.1| topoisomerase I [Arrowinus relictus]
Length = 238
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 152/238 (63%), Gaps = 15/238 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRV---DLDR-AKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAK 879
L EKI+ + +KD D R A+ G + D K+K LER Q AK
Sbjct: 131 LKEKIDTKRDTIKDAERQVKDAQRDARNGSVKEKQIYDKKKK------MLERLKDQL-AK 183
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA 937
+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ EVPIEKI+NK+ KF WA
Sbjct: 184 LEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFEVPIEKIYNKTQRDKFRWA 238
>gi|304274011|gb|ADM18443.1| topoisomerase I [Thinopinus pictus]
Length = 241
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 156/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K+ LER Q
Sbjct: 131 LKEKIETKRDTIADAERQVKDAQRD---AKHGSVKEKVIYDKKKKQ------LERLREQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273983|gb|ADM18429.1| topoisomerase I [Paederus sp. SC-2010]
Length = 241
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/237 (51%), Positives = 154/237 (64%), Gaps = 9/237 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASWTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKD-LRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE K ++D R D K K +++ K+ E L+ ++ AK+E
Sbjct: 131 LKEKIETKKDAIRDGERQVKDAQKDAKHGSVREKQIYDKKKKMLERLKEQL----AKLEI 186
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+ KF WA+D
Sbjct: 187 QETD---RDENKTIALGTSKLNYLDPRISVAWCKKFGVPIEKIYNKTQRDKFRWAID 240
>gi|304273949|gb|ADM18412.1| topoisomerase I [Diochus sp. SC-2010]
Length = 241
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 149/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAIMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D V+ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDESVSEKILSYNRANRAVAILCNHQRAVPKGHQKSMXK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI + D + + AKK G K E ++ + + ++ K+
Sbjct: 131 LKEKIXAKRESXHDAKRQVSDAKKDA------RHGSVKEKQIYEKKKKMLEKMXEQLNKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+HEVPIEKI+NK+ KF WA+D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKHEVPIEKIYNKTQRDKFRWAID 240
>gi|241709640|ref|XP_002413389.1| DNA topoisomerase type I, putative [Ixodes scapularis]
gi|215507203|gb|EEC16697.1| DNA topoisomerase type I, putative [Ixodes scapularis]
Length = 250
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/258 (48%), Positives = 167/258 (64%), Gaps = 20/258 (7%)
Query: 669 LALRAGNEKDDDE-ADTVGCCTLKVGNVECIPPNK------LKFDFLGKDSIQYVNTVEV 721
LALRAGNEK++ E ADTVGCC+L+V ++ + +K ++FDFLGKDSI+YVN V V
Sbjct: 2 LALRAGNEKEEGETADTVGCCSLRVEHL-TLHDSKDGKEFVVEFDFLGKDSIRYVNAVPV 60
Query: 722 ELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
E V++ + F KK DDLFD+L+T+ LN HL ELM GLTAKVFRTYNAS TL L
Sbjct: 61 EKRVFRNLKLFMENKKPADDLFDRLNTSILNKHLNELMEGLTAKVFRTYNASKTLQEQLE 120
Query: 782 KGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
T D + K+ Y RAN+ VAI+CNHQR V KT QM L +K+E+ + +++ +
Sbjct: 121 LLTEADMSLPEKMLAYNRANRAVAILCNHQRAVPKTFDKQMENLQKKMEEKEAQIRECKK 180
Query: 841 DLDRAKKGKPPLMKDSDGKRKRNLAPEALERK---MAQTNAKIEKMERDMKTKEDLKTVA 897
+L + K +S ++ + L LERK M Q +++K+E KE+ K +A
Sbjct: 181 ELKQHKSD----YNNSRSEKDKQL----LERKKKRMQQLEDQMKKLEVQATDKEENKQIA 232
Query: 898 LGTSKINYLDPRITVAWC 915
LGTSK+NYLDPRI+VAWC
Sbjct: 233 LGTSKLNYLDPRISVAWC 250
>gi|304273987|gb|ADM18431.1| topoisomerase I [Hesperopalpus sp. SC-2010]
Length = 241
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 156/240 (65%), Gaps = 15/240 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTTLMNKHLNELMAGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V KTH M +
Sbjct: 71 KVFRTYNASFTLQXQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKTHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDS---DGKRKRNLAPEALERKMAQTNAK 879
L EKI+ + +KD + D K K +K+ D K+K LER Q AK
Sbjct: 131 LKEKIDQKRLAIKDAERQVKDAQKDAKHGSVKEKVVYDKKKK------LLERFRDQL-AK 183
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
+E E D +++ KT++LGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 184 LEIQETD---RDENKTISLGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|304273997|gb|ADM18436.1| topoisomerase I [Quedius antipodus]
Length = 241
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L K T + D +A KI Y RAN+ VAI+CNHQR V K H M
Sbjct: 71 KVFRTYNASFTLQQQLEKLTNEDDSIAEKILSYNRANRAVAILCNHQRAVPKGHQKSMEA 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ K + D + A+K + S ++ + + ++ + AK+E
Sbjct: 131 LKEKIQTKKDTIADAERQVKDAQKDAK---RGSVKEKVVFEKKKKMLDRLREQLAKLEIQ 187
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D K++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF WA+D
Sbjct: 188 ETD---KDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRWAID 240
>gi|304273923|gb|ADM18399.1| topoisomerase I [Amblyopinus emarginatus]
Length = 241
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEEDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEA 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ K + D + A+K + S ++ + + +M + AK+E
Sbjct: 131 LKEKIQAKKESIADAERQVKDAQKDAK---RGSVKEKVVFEKKKKMLDRMREQLAKLEIQ 187
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D K++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF WA+D
Sbjct: 188 ETD---KDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRWAID 240
>gi|304274013|gb|ADM18444.1| topoisomerase I [Tympanophorus sp. SC-2010]
Length = 241
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 155/243 (63%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K + DDLFD+L+T+ +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSKADDLFDRLNTSVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER Q
Sbjct: 131 LKEKIETKRETIADAERQVKDAQRD---AKHGSVREKVVYDKKKK------MLERLRDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273989|gb|ADM18432.1| topoisomerase I [Platydracus cinnamopterus]
Length = 239
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/239 (51%), Positives = 156/239 (65%), Gaps = 15/239 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDS---DGKRKRNLAPEALERKMAQTNAK 879
L EKIE+ + ++ D + D K K +K+ D K+K+ LER Q AK
Sbjct: 131 LKEKIENKREIIADAERQVKDAQKDAKHGSVKEKVIYDKKKKQ------LERLKEQL-AK 183
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+
Sbjct: 184 LEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAI 239
>gi|304273963|gb|ADM18419.1| topoisomerase I [Indoquedius sp. SC-2010]
Length = 241
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 153/236 (64%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FD LGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDLLGKDSIRYYNEVPVEXRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI++ + + D + A++ S G K + + ++++ + ++ K+
Sbjct: 131 LKEKIDNKRDAIADAERQVKSAQRDA------SKGSVKEKVIYDKKKKQLERLRDQLAKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|304273929|gb|ADM18402.1| topoisomerase I [Tolmerinus sp. SC-2010]
Length = 241
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 154/242 (63%), Gaps = 21/242 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAAGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ I Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDSLSEMILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K+ LER M
Sbjct: 131 LKEKIEAKRESIADAERQVKDAQRD---AKHGSVKEKIIYDKKKKQ------LER-MRDQ 180
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF W
Sbjct: 181 LAKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKFRW 237
Query: 937 AM 938
A+
Sbjct: 238 AI 239
>gi|304273933|gb|ADM18404.1| topoisomerase I [Astenus sp. SC-2010]
Length = 241
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 151/237 (63%), Gaps = 9/237 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASWTLQQQLDKLTNPDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + +KD + D + K +K+ K+ E L ++ K+E
Sbjct: 131 LKEKIETKRDNIKDAERQVKDAQRDAKHGSVKEKQIYEKKKKMLERLREQL----VKLEI 186
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+ KF WA+D
Sbjct: 187 QETD---RDENKTIALGTSKLNYLDPRISVAWCKKFGVPIEKIYNKTQRDKFRWAID 240
>gi|304273993|gb|ADM18434.1| topoisomerase I [Platyprosopus sp. SC-2010]
Length = 241
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 151/240 (62%), Gaps = 15/240 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTGVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKK----GKPPLMKDSDGKRKRNLAPEALERKMAQTNAK 879
L EKIE K + D + A+K G + D K+K LER Q +K
Sbjct: 131 LKEKIETXKDAIADAERQVKDAQKDARHGSVKEKQIYDRKKK------MLERLKDQL-SK 183
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ VPIEKI+NK+ KF WA+D
Sbjct: 184 LEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFGVPIEKIYNKTQRDKFRWAID 240
>gi|195117043|ref|XP_002003060.1| GI24443 [Drosophila mojavensis]
gi|193913635|gb|EDW12502.1| GI24443 [Drosophila mojavensis]
Length = 555
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 243/550 (44%), Gaps = 82/550 (14%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW TL HNG FP + LP VK Y V LT + EEVAT +A ++ T ++Q +F
Sbjct: 64 KWQTLRHNGPCFPADHERLPADVKFYYDNCPVELTEQAEEVATFYAKLMKTAFVQMREFN 123
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+N++R L + I E C+F I + + Q+E +K+ +EE K
Sbjct: 124 QNFFNEFRSCLSEEQRRYITCFELCNFCDISQYLECQREDEKERIAEENKL--------- 174
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGR-GEHPKMGKLKKRIQPSDITINI--GKDVPI 574
Y + +VDG ++ FR+ PGL R G MG ++ R+ P D+ IN ++ P
Sbjct: 175 --YGYCLVDGESRRITQFRISRPGLCCPRHGFSTTMGTIRPRVLPEDVVINCDENEEPPA 232
Query: 575 PECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKL 634
P C G W V HD TV W+ WND + SS R+ + AR+L
Sbjct: 233 PPC---GHLWAAVVHDRTVRWVYAWNDIVTGCMHHAYPRNESSRRSRPPRRDLLDTARRL 289
Query: 635 KDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGN 694
+ ++H IR Y S + RQ +VA Y ID+LA+ E+ E G C V N
Sbjct: 290 QQHLHHIRNEYQTLQSSENWLVRQRSVALYCIDQLAMSCDAEEVPAETTVCGLC---VQN 346
Query: 695 VECIPP-----NKLKFDFLGKDSIQY-VNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
++ P N L+ +D Q V ++ + F GK+ ++ +F++L+T
Sbjct: 347 IKLCPRLGGQRNVLQLLAGNRDCRQREYKRSSVPPGIFYNLSVFICGKQPDELVFEELNT 406
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
LN HL LM GLT+ VFR NAS L+ L K + ++ Y +A K V + C
Sbjct: 407 ETLNEHLDFLMDGLTSSVFRICNASRLLEDRLIKIPLSATLCEQLTAYNKALKAVHMHCG 466
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEA 868
+ R+D P L + P A
Sbjct: 467 --------------------------FRHRRID------PLPALKR-----------PCA 483
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF-N 927
+ R A K+ + L+T L + YLDPRIT++WC R E+P+ I+ N
Sbjct: 484 IPRNSAAEQRKLRSIR--------LQTKPLVEATFFYLDPRITISWCLRREIPLSSIYLN 535
Query: 928 KSLLAKFAWA 937
+ K WA
Sbjct: 536 YGMRKKLFWA 545
>gi|304273979|gb|ADM18427.1| topoisomerase I [Ontholestes murinus]
Length = 241
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 152/235 (64%), Gaps = 7/235 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE+ + + D + A+K G K + + ++++ + ++ K+
Sbjct: 131 LKEKIENKRDAIADAERQVKDAQKDAKH------GSVKEKVIYDKKKKQLERLKEQLVKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTHRDKFRWAI 239
>gi|304274001|gb|ADM18438.1| topoisomerase I [Quedius picipes]
Length = 241
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 153/237 (64%), Gaps = 9/237 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL-APEALERKMAQTNAKIEK 882
L EKI+ + + D +R K K K K N + + +++ + AK+E
Sbjct: 131 LKEKIDSKRDAI----ADGERQVKDAQREAKHGSVKEKVNFDKKKKMLQRLKEQLAKLEI 186
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 187 QETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|304273919|gb|ADM18397.1| topoisomerase I [Acylophorus sp. SC-2010]
Length = 241
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 156/243 (64%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFIENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G D K+K+ LER M +
Sbjct: 131 LKEKIDGKRDSIADAERQVKDAQRD---AKHGSVKEKVIYDKKKKQ------LER-MKEQ 180
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 181 LAKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273941|gb|ADM18408.1| topoisomerase I [Belonuchus mimeticus]
Length = 241
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 155/243 (63%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + + K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLYMENKAPGDDLFDRLNTALMNKHLNELMSGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
+ EKI+ D + +KD + D AK G D K+K LER Q
Sbjct: 131 IKEKIDAKRDAISDAERQVKDAQRD---AKHGSVKEKVIYDKKKK------MLERLRDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273977|gb|ADM18426.1| topoisomerase I [Oligotergus sp. SC-2010]
Length = 241
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 152/243 (62%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDTVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR-------KRNLAPEALERKMAQT 876
L EKI+ + + D + A+K D +R + LER M
Sbjct: 131 LKEKIDAKRDSIADAERQVKDAEK---------DARRGSVKEKVVYEKKKKQLER-MRDQ 180
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 181 LAKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273951|gb|ADM18413.1| topoisomerase I [Elecatopselaphus sp. SC-2010]
Length = 241
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 151/243 (62%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDSVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR-------KRNLAPEALERKMAQT 876
L EKI+ + + D + A+K D +R + LER M
Sbjct: 131 LKEKIDAKRDTIADAERQVKDAEK---------DARRGSVKEKVVYEKKKKQLER-MRDQ 180
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 181 LAKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273971|gb|ADM18423.1| topoisomerase I [Nordus fungicola]
Length = 241
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 151/243 (62%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDTVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR-------KRNLAPEALERKMAQT 876
L EKI+ + + D + A+K D +R + LER M
Sbjct: 131 LKEKIDAKRDSIADAERQVKDAEK---------DARRGSVKEKVVYEKKKKQLER-MRDQ 180
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF W
Sbjct: 181 LAKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A D
Sbjct: 238 AXD 240
>gi|304273959|gb|ADM18417.1| topoisomerase I [Hesperus sp. SC-2010]
Length = 241
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 155/243 (63%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTALMNKHLNELMGGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK+G D K+K LER Q
Sbjct: 131 LKEKIEAKREAISDAERQVKDAQKD---AKRGSVKEKVVYDKKKK------MLERLRDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLD RI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDLRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273991|gb|ADM18433.1| topoisomerase I [Platydracus sp. SC-2010]
Length = 241
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + A++ S ++ + L ++M + AK+E
Sbjct: 131 LKEKIDTKRETIADAERQVKDAQRDAK---HGSVKEKVVYEKKKKLLQRMKEQLAKLEIQ 187
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 188 ETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|304273953|gb|ADM18414.1| topoisomerase I [Gastrisus sp. SC-2010]
Length = 241
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 151/243 (62%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDTVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMDK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR-------KRNLAPEALERKMAQT 876
L EKI+ + + D + A+K D +R + LER Q
Sbjct: 131 LKEKIDTKRDTIADAERQVKDAEK---------DARRGSVKEKVVYEKKKKQLERLRDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|304273947|gb|ADM18411.1| topoisomerase I [Dinothenarus saphyrinus]
Length = 241
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 157/244 (64%), Gaps = 22/244 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHL-KELMPGLT 763
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL +ELM GLT
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNEELMEGLT 70
Query: 764 AKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS 822
AKVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M
Sbjct: 71 AKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSME 130
Query: 823 RLTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQ 875
+L EKIE D + +KD + D AK G D K+K+ LER Q
Sbjct: 131 KLKEKIEAKRDTIADAERQVKDAQRD---AKHGSVKEKVIYDKKKKQ------LERLREQ 181
Query: 876 TNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFA 935
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ EVP++KI+NK+ +F
Sbjct: 182 L-AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFEVPMDKIYNKTQREQFR 237
Query: 936 WAMD 939
WA+D
Sbjct: 238 WAID 241
>gi|304274019|gb|ADM18447.1| topoisomerase I [Xenopygus analis]
Length = 241
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 152/242 (62%), Gaps = 21/242 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDTVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR-------KRNLAPEALERKMAQT 876
L EKI+ + + D + A+K D +R + LER Q
Sbjct: 131 LKEKIDAKRDTIADAERQVKDAEK---------DARRGSVKEKVVYEKKKKQLERLRDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRW 237
Query: 937 AM 938
A+
Sbjct: 238 AI 239
>gi|304274005|gb|ADM18440.1| topoisomerase I [Quedius suturalis]
Length = 241
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 152/237 (64%), Gaps = 9/237 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
K FRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KCFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL-APEALERKMAQTNAKIEK 882
L EKI+ + + D +R K K K K N + + +++ + AK+E
Sbjct: 131 LKEKIDSKRDAI----ADGERQVKDAQREAKHGSVKEKVNFDKKKKMLQRLKEQLAKLEI 186
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 187 QETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|304274017|gb|ADM18446.1| topoisomerase I [Xanthopygus sp. SC-2010]
Length = 241
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 151/242 (62%), Gaps = 21/242 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D VA KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDTVAEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR-------KRNLAPEALERKMAQT 876
L EKI+ + V+ D + A+K D +R + LER Q
Sbjct: 131 LKEKIDAKRDVIADAERQVKDAEK---------DARRGSVKEKVVYEKKKKQLERLRDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AM 938
A+
Sbjct: 238 AI 239
>gi|304273925|gb|ADM18400.1| topoisomerase I [Anaquedius vernix]
Length = 241
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 150/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLEKLTNADDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + ++ D + A+K G K + E ++++ + ++ K+
Sbjct: 131 LKEKIEAKRDIIADAERQVKDAQKDAKH------GSVKEKVVYEKKKKQLERLRDQLAKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+ VPI+KI+NK+ KF WA+D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFGVPIDKIYNKTQRDKFRWAID 240
>gi|304274003|gb|ADM18439.1| topoisomerase I [Quedius molochinus]
Length = 241
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 152/236 (64%), Gaps = 9/236 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL-APEALERKMAQTNAKIEK 882
L EKI+ + + D +R K K K K N + + +++ + AK+E
Sbjct: 131 LKEKIDSKRDAI----ADGERQVKDAQREAKHGSVKEKVNFDKKKKMLQRLKEQLAKLEI 186
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+
Sbjct: 187 QETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAI 239
>gi|304273945|gb|ADM18410.1| topoisomerase I [Cafius seminitens]
Length = 238
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 152/242 (62%), Gaps = 23/242 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTALMNKHLNELMSGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQ- 875
L EKIE D + +KD + D AK G D K+K LER Q
Sbjct: 131 LKEKIEVKREAISDAERQVKDAQRD---AKHGSVKEKVIYDKKKK------MLERLREQL 181
Query: 876 TNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFA 935
T +I++ +RD + KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF
Sbjct: 182 TKLEIQETDRD-----ENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFR 236
Query: 936 WA 937
WA
Sbjct: 237 WA 238
>gi|304273965|gb|ADM18420.1| topoisomerase I [Naddia sp. SC-2010]
Length = 241
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 154/243 (63%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVL-------KDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE + + KD + D AK G D K+K LER Q
Sbjct: 131 LKEKIEAKRESIAXAERQVKDAQKD---AKHGSVKEKVIYDKKKK------MLERLKDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
AK+E E D +++ KT++LGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF W
Sbjct: 182 -AKLEIQETD---RDENKTISLGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|381143641|gb|AFF58481.1| topoisomerase I, partial [Bembidion caoduroi]
Length = 247
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 154/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 192 LMKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|304273927|gb|ADM18401.1| topoisomerase I [Anchocerus sp. SC-2010]
Length = 241
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 151/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFIENKSPGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLEKLTNAEDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + A+K G K + E ++++ + ++ K+
Sbjct: 131 LKEKIDAKRETISDAERQVKDAQKDAKH------GSVKEKVVYEKKKKQLERLRDQLAKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPI+KI+NK+ KF WA+D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIDKIYNKTQRDKFRWAID 240
>gi|304274015|gb|ADM18445.1| topoisomerase I [Velleius dilatatus]
Length = 241
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 153/241 (63%), Gaps = 17/241 (7%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKNTGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAEPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEAL----ERKMAQ-TNA 878
L EKI+ + + D G+ +KD+ KR E + ++KM Q
Sbjct: 131 LKEKIDSKREAIAD----------GERQ-VKDAQKDAKRGSVKEKVLFDKKKKMLQRLKD 179
Query: 879 KIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
++ K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+
Sbjct: 180 QLVKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAI 239
Query: 939 D 939
D
Sbjct: 240 D 240
>gi|304273921|gb|ADM18398.1| topoisomerase I [Algon sp. SC-2010]
Length = 241
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 150/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMESKAPADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + K + S ++ + L ++ AK+E
Sbjct: 131 LKEKIDTKRDTIADAE---RQVKDAQREAKHGSVKEKVVYEKKKKLLERLRDQLAKLEIQ 187
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT++LGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 188 ETD---RDENKTISLGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|381143873|gb|AFF58597.1| topoisomerase I, partial [Bembidion tairuense]
Length = 243
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 18 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 77
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 78 KVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 137
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + LKD + D AK G D K+K LER + +
Sbjct: 138 LKEKIEQKREQITDAQKQLKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 187
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 188 LIKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 242
>gi|381143719|gb|AFF58520.1| topoisomerase I, partial [Bembidion hirtipes]
Length = 245
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 152/233 (65%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 192 LMKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|381143695|gb|AFF58508.1| topoisomerase I, partial [Bembidion festivum]
Length = 247
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 155/238 (65%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D++ +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDVQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVQETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143809|gb|AFF58565.1| topoisomerase I, partial [Bembidion pseudocautum]
Length = 247
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 154/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIDQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 192 LMKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|304273999|gb|ADM18437.1| topoisomerase I [Quedius cruentus]
Length = 241
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 150/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMDNKNTGDDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAEPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + A++ G K + + ++ + + ++ K+
Sbjct: 131 LKEKIDSKREAIADGERQVKDAQRDAKH------GSVKEKVLFDKKKKMLQRLKEQLVKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 185 EIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|381143861|gb|AFF58591.1| topoisomerase I, partial [Bembidion (Nothonepha) nr. lonae
DRM-2012]
Length = 239
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 152/233 (65%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 18 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 77
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 78 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 137
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 138 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 187
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 188 LIKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 237
>gi|381143893|gb|AFF58607.1| topoisomerase I, partial [Bembidion vile]
Length = 247
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|189094085|gb|ACD75870.1| topoisomerase I [Sirdenus grayii]
Length = 247
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 151/231 (65%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDSLAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A+K G K L E ++ + + +++K+
Sbjct: 142 LKEKIDQKREQIADAQRQVKDAQKDAKH------GSVKEKLVYEKKKKMLDKLKDQLKKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 196 EVQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143625|gb|AFF58473.1| topoisomerase I, partial [Bembidion assimile]
Length = 247
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143909|gb|AFF58615.1| topoisomerase I, partial [Bembidion osculans]
Length = 247
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D++ +KD + D AK G D K+K LER Q
Sbjct: 142 LKEKIEQKREQITDVQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLERLKDQL 192
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 193 -VKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143905|gb|AFF58613.1| topoisomerase I, partial [Bembidion disjunctum]
gi|381143907|gb|AFF58614.1| topoisomerase I, partial [Bembidion erasum]
Length = 247
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D++ +KD + D AK G D K+K LER Q
Sbjct: 142 LKEKIEQKREQIADVQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLERLKDQL 192
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 193 -VKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|189094067|gb|ACD75861.1| topoisomerase I [Chauliognathus opacus]
Length = 247
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 153/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+TA LN HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMEKKEPGDDLFDRLNTAILNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 82 KVFRTYNASWTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPKGHEKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
+ EKI+ + +KD + D + K +K+ K+ E L+ ++ T +I++
Sbjct: 142 IKEKIDAKRQAIKDAERQVKDAQRDAKHGSVKEKTVYEKKRKLLERLKEQL--TKLEIQE 199
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+RD + KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 200 TDRD-----ENKTIALGTSKLNYLDPRISVAWCKKNDVPIEKIYNKTQRDKF 246
>gi|381143721|gb|AFF58521.1| topoisomerase I, partial [Bembidion horni]
gi|381143771|gb|AFF58546.1| topoisomerase I, partial [Bembidion mundum]
Length = 247
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143773|gb|AFF58547.1| topoisomerase I, partial [Bembidion nigrivestis]
Length = 247
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTSGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ +
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLIR 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143749|gb|AFF58535.1| topoisomerase I, partial [Bembidion lonae]
Length = 236
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 152/233 (65%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 14 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 73
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 74 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 133
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 134 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 183
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 184 LIKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 233
>gi|381143903|gb|AFF58612.1| topoisomerase I, partial [Bembidion castum]
Length = 246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D++ +KD + D AK G D K+K LER Q
Sbjct: 142 LKEKIEQKREQIADVQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLERLKDQL 192
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 193 -VKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143621|gb|AFF58471.1| topoisomerase I, partial [Bembidion aratum]
gi|381143681|gb|AFF58501.1| topoisomerase I, partial [Bembidion dorsale]
Length = 247
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143885|gb|AFF58603.1| topoisomerase I, partial [Bembidion variegatum]
Length = 246
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVMETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143823|gb|AFF58572.1| topoisomerase I, partial [Bembidion rogersi]
Length = 246
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTXRDKF 246
>gi|381143623|gb|AFF58472.1| topoisomerase I, partial [Bembidion articulatum]
Length = 246
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143789|gb|AFF58555.1| topoisomerase I, partial [Bembidion pedicellatum]
Length = 245
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143729|gb|AFF58525.1| topoisomerase I, partial [Bembidion interventor]
Length = 235
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 10 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 69
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 70 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 129
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 130 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 179
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 180 LIKLEVMETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 234
>gi|381143935|gb|AFF58628.1| topoisomerase I, partial [Thalassotrechus barbarae]
Length = 237
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 12 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLSELMEGLTA 71
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M
Sbjct: 72 KVFRTYNASWTLQQQLDELTNADDSIAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEL 131
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD-GKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A++ +KD+ G K L E ++ + + +++K
Sbjct: 132 LKEKIDQKREQIAD-------AQRQVKDALKDAKRGSVKEKLIHEKKKKMLDKLKDQLKK 184
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 185 LEVQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 236
>gi|381143745|gb|AFF58533.1| topoisomerase I, partial [Bembidion levigatum]
Length = 247
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVMETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143687|gb|AFF58504.1| topoisomerase I, partial [Bembidion ephippium]
Length = 244
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 151/227 (66%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ +G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKNGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143725|gb|AFF58523.1| topoisomerase I, partial [Bembidion immaturum]
Length = 247
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + LKD + D AK G D K+K LER Q
Sbjct: 142 LKEKIEQKREQITDAQKQLKDAQRD---AKHGSVKEKVVYDKKKK------TLERLKDQL 192
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 -MKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143679|gb|AFF58500.1| topoisomerase I, partial [Bembidion connivens]
Length = 247
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLREQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143833|gb|AFF58577.1| topoisomerase I, partial [Bembidion salinarium]
Length = 245
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T G+ VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTSGEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 192 LMKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|189094109|gb|ACD75882.1| topoisomerase I [Bembidion chalceum]
gi|189094111|gb|ACD75883.1| topoisomerase I [Bembidion chalceum]
Length = 247
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R +D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIDEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143747|gb|AFF58534.1| topoisomerase I, partial [Bembidion liangi]
Length = 245
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T +GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNEGDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143657|gb|AFF58489.1| topoisomerase I, partial [Bembidion chilense]
Length = 247
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 192 LMKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143659|gb|AFF58490.1| topoisomerase I, partial [Bembidion clemens]
gi|381143757|gb|AFF58539.1| topoisomerase I, partial [Bembidion maorinum]
Length = 247
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143899|gb|AFF58610.1| topoisomerase I, partial [Diplochaetus planatus]
Length = 245
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 151/231 (65%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNADDSLAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A+K G K L E ++ + + +++++
Sbjct: 141 LKEKIDQKREQIADAQRQVKDAQKDAKH------GSVKEKLIHEKKKKMLDKLKDQLKRL 194
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 EVQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 245
>gi|381143895|gb|AFF58608.1| topoisomerase I, partial [Bembidion wickhami]
Length = 247
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 155/238 (65%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G D K+K +LER + +
Sbjct: 142 LKEKIDQKREQIADAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------SLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 192 LIKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143619|gb|AFF58470.1| topoisomerase I, partial [Bembidion anthracinum]
Length = 246
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143857|gb|AFF58589.1| topoisomerase I, partial [Bembidion solieri]
Length = 245
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 244
>gi|381143631|gb|AFF58476.1| topoisomerase I, partial [Bembidion biguttatum]
Length = 247
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|189094097|gb|ACD75876.1| topoisomerase I [Bembidion mandibulare]
Length = 247
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLTELMDGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTIAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LMKLEVMETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143787|gb|AFF58554.1| topoisomerase I, partial [Bembidion parviceps]
Length = 226
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 150/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 6 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 65
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 66 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 125
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + LKD + D AK G D K+K LER + +
Sbjct: 126 LKEKIEQKREQITDAQKQLKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 175
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 176 LIKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 225
>gi|381143605|gb|AFF58463.1| topoisomerase I, partial [Bembidion (Nothocys) sp. 1 DRM-2012]
Length = 241
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 151/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + LKD + D AK G D K+K LER Q
Sbjct: 140 LKEKIDQKREQITDAQKQLKDAQRD---AKHGSVKEKVVYDKKKK------TLERLKDQL 190
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 191 -MKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 239
>gi|381143829|gb|AFF58575.1| topoisomerase I, partial [Bembidion rufoplagiatum]
Length = 241
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 151/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E +E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 192 LMKLEVLETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|381143655|gb|AFF58488.1| topoisomerase I, partial [Bembidion (Andrewesa) cf. incisum
DRM-2012]
Length = 242
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 152/233 (65%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 192 LMKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|304273981|gb|ADM18428.1| topoisomerase I [Othius punctulatus]
Length = 241
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 154/243 (63%), Gaps = 21/243 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T+ +N L ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTSVMNKQLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T +GD ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNEGDSLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G + D K+K LER Q
Sbjct: 131 LKEKIDAKRESISDAERQVKDAQKD---AKHGSVREKQIYDKKKK------MLERLKDQL 181
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAW 936
K+E E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ VPI+KI++K+ +F W
Sbjct: 182 -CKLEIQETD---RDENKTIALGTSKLNYLDPRISVAWCKKSXVPIDKIYHKTQRDQFRW 237
Query: 937 AMD 939
A+D
Sbjct: 238 AID 240
>gi|380714843|gb|AFE02794.1| topoisomerase I, partial [Bembidion rothfelsi]
Length = 241
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R +D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIDEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143613|gb|AFF58467.1| topoisomerase I, partial [Bembidion aenulum]
Length = 247
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 154/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEK-------IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EK IED + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIEDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|380714825|gb|AFE02785.1| topoisomerase I, partial [Bembidion levettei]
Length = 246
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 154/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEK-------IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EK IED + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIEDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143819|gb|AFF58570.1| topoisomerase I, partial [Bembidion ripicola]
Length = 245
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 150/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER M +
Sbjct: 142 LKEKIEQKREQIADAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-MKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 192 LIKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|189094107|gb|ACD75881.1| topoisomerase I [Bembidion inaequale]
gi|380714815|gb|AFE02780.1| topoisomerase I, partial [Bembidion bowditchii]
gi|381143785|gb|AFF58553.1| topoisomerase I, partial [Bembidion paraenulum]
Length = 247
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + ++D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIED-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143897|gb|AFF58609.1| topoisomerase I, partial [Bembidion xanthacrum]
Length = 246
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQRTV K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNPDDTVAEKILSYNRANRAVAILCNHQRTVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 141 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 193
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 194 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 245
>gi|380714823|gb|AFE02784.1| topoisomerase I, partial [Bembidion lapponicum]
Length = 246
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + ++D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIED-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|380714827|gb|AFE02786.1| topoisomerase I, partial [Bembidion americanum]
Length = 227
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 2 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 61
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 62 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 121
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 122 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 174
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 175 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 226
>gi|304273943|gb|ADM18409.1| topoisomerase I [Bolitogyrus sp. SC-2010]
Length = 241
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 150/236 (63%), Gaps = 7/236 (2%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
F FLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 11 FXFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAAADDLFDRLNTAVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D ++ KI Y RAN+ VAI+CNHQR V K H M +
Sbjct: 71 KVFRTYNASFTLQQQLDKLTNPDDTLSEKILSYNRANRAVAILCNHQRAVPKGHQKSMEK 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + A++ + S ++ + + ++ AK+E
Sbjct: 131 LKEKIDTKRETIADAERQVKDAQRDAK---RGSVKEKVVYEKKKKMLERLRDXLAKLEIQ 187
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
E D +++ KT+ALGTSK+NYLDPRI+VAWCK+ +VPI+KI+NK+ KF WA+D
Sbjct: 188 ETD---RDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIYNKTQRDKFRWAID 240
>gi|381143869|gb|AFF58595.1| topoisomerase I, partial [Bembidion spinolai]
Length = 244
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLTELMDGLTA 78
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNANDTVTEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 139 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 188
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 189 LMKLEVMETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 243
>gi|381143583|gb|AFF58452.1| topoisomerase I, partial [Amerizus spectabilis]
Length = 245
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 151/231 (65%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNGDDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A++ G K L + ++ + + ++ K+
Sbjct: 141 LKEKIDQKREQITDGQRQVKDAQRDAKH------GSVKEKLVYDKKKKMLERLRDQLVKL 194
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 245
>gi|381143815|gb|AFF58568.1| topoisomerase I, partial [Bembidion rawlinsi]
Length = 241
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|381143685|gb|AFF58503.1| topoisomerase I, partial [Bembidion dyschirinum]
gi|381143805|gb|AFF58563.1| topoisomerase I, partial [Bembidion properans]
Length = 246
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIDQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E ME D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LMKLEVMETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143755|gb|AFF58538.1| topoisomerase I, partial [Bembidion luridicorne]
Length = 243
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 151/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E ME D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 192 LMKLEVMETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|380714829|gb|AFE02787.1| topoisomerase I, partial [Bembidion bifossulatum]
Length = 245
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143643|gb|AFF58482.1| topoisomerase I, partial [Bembidion carinula]
Length = 246
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + ++D A+K +D+ G K + + ++ + + ++ K
Sbjct: 141 LKEKIEQKREQIED-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 193
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 194 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 245
>gi|381143699|gb|AFF58510.1| topoisomerase I, partial [Bembidion fortestriatum]
Length = 247
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143607|gb|AFF58464.1| topoisomerase I, partial [Bembidion (Omotaphus) sp. 1 DRM-2012]
Length = 247
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143777|gb|AFF58549.1| topoisomerase I, partial [Bembidion niloticum batesi]
Length = 245
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143701|gb|AFF58511.1| topoisomerase I, partial [Bembidion foveolatum]
gi|381143821|gb|AFF58571.1| topoisomerase I, partial [Bembidion opulentum riverinae]
Length = 247
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143813|gb|AFF58567.1| topoisomerase I, partial [Bembidion quadrimaculatum dubitans]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLXELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T GD VA KI Y RAN+ VAI+CNHQR+V +H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPXSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143673|gb|AFF58497.1| topoisomerase I, partial [Bembidion contractum]
Length = 236
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 17 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 76
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 77 KVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 136
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 137 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 189
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 190 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 236
>gi|189094101|gb|ACD75878.1| topoisomerase I [Bembidion integrum]
gi|189094103|gb|ACD75879.1| topoisomerase I [Bembidion integrum]
gi|189094113|gb|ACD75884.1| topoisomerase I [Bembidion rufotinctum]
gi|189094115|gb|ACD75885.1| topoisomerase I [Bembidion rufotinctum]
gi|380714831|gb|AFE02788.1| topoisomerase I, partial [Bembidion cheyennense]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143927|gb|AFF58624.1| topoisomerase I, partial [Sinechostictus dahli]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R + A+K +D+ G K + + ++ + + ++ +
Sbjct: 142 LKEKIE-------QKREQITEAQKQVKDAQRDAKHGSVKEKVVHDKKKKMLERLKEQLVR 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|189094105|gb|ACD75880.1| topoisomerase I [Bembidion inaequale]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 154/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEK-------IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EK IED + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIEDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|189094099|gb|ACD75877.1| topoisomerase I [Bembidion concolor]
gi|380714813|gb|AFE02779.1| topoisomerase I, partial [Bembidion californicum]
gi|381143775|gb|AFF58548.1| topoisomerase I, partial [Bembidion nigrum]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143817|gb|AFF58569.1| topoisomerase I, partial [Bembidion recticolle]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|189094089|gb|ACD75872.1| topoisomerase I [Bembidion transversale]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRHKF 246
>gi|381143713|gb|AFF58517.1| topoisomerase I, partial [Bembidion grandiceps]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIND-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143883|gb|AFF58602.1| topoisomerase I, partial [Bembidion trechiforme]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+ T G+ VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDGLTNGEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + D + + A++ G K + + ++ + + ++ K+
Sbjct: 142 LKEKIEQKREQISDAQRQVKDAQRDAKH------GSVKEKVVHDKKKKMLERLKEQLMKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 196 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143697|gb|AFF58509.1| topoisomerase I, partial [Bembidion flohri]
gi|381143887|gb|AFF58604.1| topoisomerase I, partial [Bembidion varium]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|380714841|gb|AFE02793.1| topoisomerase I, partial [Bembidion louisella]
Length = 245
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R +D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIDEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143845|gb|AFF58583.1| topoisomerase I, partial [Bembidion sejunctum semiaureum]
Length = 245
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 150/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIVDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 192 LVKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|381143737|gb|AFF58529.1| topoisomerase I, partial [Bembidion kuprianovii]
Length = 245
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|189094095|gb|ACD75875.1| topoisomerase I [Bembidion rapidum]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIVDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LVKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143839|gb|AFF58580.1| topoisomerase I, partial [Bembidion scintillans]
Length = 245
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|189094091|gb|ACD75873.1| topoisomerase I [Bembidion umbratum]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTXRDKF 246
>gi|381143783|gb|AFF58552.1| topoisomerase I, partial [Bembidion octomaculatum]
Length = 247
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIXD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143875|gb|AFF58598.1| topoisomerase I, partial [Bembidion tetracolum]
Length = 247
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 151/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIVDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI VAWCK++EVPIEKI+NK+ KF
Sbjct: 192 LIKLEVQETD---RDENKAIALGTSKLNYLDPRIXVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143807|gb|AFF58564.1| topoisomerase I, partial [Bembidion proprium]
Length = 244
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|189094081|gb|ACD75868.1| topoisomerase I [Scaphinotus petersi]
Length = 247
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 150/234 (64%), Gaps = 13/234 (5%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGDV-AVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T + D A KI Y RAN+ VAI+CNHQR+V K H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNEDDTEAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR---KRNLAPEALERKMAQTNAKI 880
L EKIE K + D + A++ D KR K + + ++ + + ++
Sbjct: 142 LKEKIEQKKDAISDAEQQVKDAQR---------DAKRGSVKEKVVYDKKKKTLERLKDQL 192
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 MKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKAQRDKF 246
>gi|381143859|gb|AFF58590.1| topoisomerase I, partial [Bembidion (Antiperyphanes) nr. chilense
DRM-2012]
Length = 244
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 151/233 (64%), Gaps = 21/233 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E +E D +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 192 LMKLEVLETD---RDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|381143671|gb|AFF58496.1| topoisomerase I, partial [Bembidion constricticolle]
gi|381143675|gb|AFF58498.1| topoisomerase I, partial [Bembidion cupreostriatum]
gi|381143863|gb|AFF58592.1| topoisomerase I, partial [Bembidion (Notaphus) nr. ugartei
DRM-2012]
Length = 247
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143753|gb|AFF58537.1| topoisomerase I, partial [Bembidion lunulatum]
Length = 243
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 151/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 18 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 77
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 78 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 137
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K + ++ +
Sbjct: 138 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK-------MXERLKEQ 187
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 188 LIKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 242
>gi|381143761|gb|AFF58541.1| topoisomerase I, partial [Bembidion mckinleyi carneum]
Length = 232
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 7 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 66
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 67 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 126
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 127 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 179
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 180 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 231
>gi|381143793|gb|AFF58557.1| topoisomerase I, partial [Bembidion persimile]
Length = 241
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + ++D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIED-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLREQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|380714817|gb|AFE02781.1| topoisomerase I, partial [Bembidion confusum]
Length = 246
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143763|gb|AFF58542.1| topoisomerase I, partial [Bembidion melanopodum]
gi|381143831|gb|AFF58576.1| topoisomerase I, partial [Bembidion rugosellum]
Length = 247
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143929|gb|AFF58625.1| topoisomerase I, partial [Sinechostictus elongatus]
Length = 247
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVIHDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
++E E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIRLEVQETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143931|gb|AFF58626.1| topoisomerase I, partial [Sinechostictus solarii]
Length = 247
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ +
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVHDKKKKMLERLKEQLVR 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|380714819|gb|AFE02782.1| topoisomerase I, partial [Bembidion coxendix]
Length = 245
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + ++D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIED-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143855|gb|AFF58588.1| topoisomerase I, partial [Bembidion siticum]
Length = 244
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K KD+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQISD-------AQKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKAXALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143835|gb|AFF58578.1| topoisomerase I, partial [Bembidion sarpedon]
Length = 246
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143911|gb|AFF58616.1| topoisomerase I, partial [Merizodus nr. catapileanus DRM-2012]
Length = 245
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 152/229 (66%), Gaps = 13/229 (5%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T + D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNNEDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR---KRNLAPEALERKMAQTNAKI 880
L EKI+ + + D + + A+K D KR K L + ++ + + ++
Sbjct: 142 LKEKIDQKRDQIGDAQRQVKDAQK---------DAKRGSVKEKLVFDKKKKLLERLKEQL 192
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 193 VKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143769|gb|AFF58545.1| topoisomerase I, partial [Bembidion modestum]
Length = 242
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 17 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 76
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 77 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 136
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 137 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 189
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 190 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 241
>gi|381143741|gb|AFF58531.1| topoisomerase I, partial [Bembidion laterale]
Length = 247
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNKDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------ANKQVKDAYRDAKHGSVKEKMIHDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143735|gb|AFF58528.1| topoisomerase I, partial [Bembidion mimekara]
Length = 247
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIND-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKDQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143667|gb|AFF58494.1| topoisomerase I, partial [Bembidion concretum]
Length = 244
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKT 241
>gi|189094069|gb|ACD75862.1| topoisomerase I [Laccophilus pictus]
Length = 247
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+K T D V KI Y RAN+ VAI+CNHQR+V K H M +
Sbjct: 82 KVFRTYNASHTLQEQLDKLTNAEDSVTEKILSYNRANRAVAILCNHQRSVPKGHQKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + +++++ + D A+ K G K L + ++ + + +++K
Sbjct: 142 LKEKIDQKREQIEEMQRQVKDAARDAKH-------GSVKEKLVHDKKKKSLDRLKEQLKK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143877|gb|AFF58599.1| topoisomerase I, partial [Bembidion texanum]
Length = 246
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAXDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQISD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143639|gb|AFF58480.1| topoisomerase I, partial [Bembidion canadianum]
Length = 242
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 147/227 (64%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 78
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 139 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 191
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI VAWCK++EVPIEKI+NK+
Sbjct: 192 LEVQETDRDENKAIALGTSKLNYLDPRIXVAWCKKYEVPIEKIYNKT 238
>gi|381143707|gb|AFF58514.1| topoisomerase I, partial [Bembidion genei illigeri]
Length = 244
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKXHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 193 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143767|gb|AFF58544.1| topoisomerase I, partial [Bembidion mimus]
Length = 234
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 15 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 74
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 75 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 134
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K KD+ G K + + ++ + + ++ K
Sbjct: 135 LKEKIEQKREQIAD-------AQKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIK 187
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 188 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 234
>gi|381143867|gb|AFF58594.1| topoisomerase I, partial [Bembidion sphaeroderum]
Length = 247
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DD FD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDXFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|381143841|gb|AFF58581.1| topoisomerase I, partial [Bembidion scitulum]
Length = 247
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|189094093|gb|ACD75874.1| topoisomerase I [Bembidion plagiatum]
gi|381143717|gb|AFF58519.1| topoisomerase I, partial [Bembidion hastii]
gi|381143759|gb|AFF58540.1| topoisomerase I, partial [Bembidion maroccanum]
gi|381143797|gb|AFF58559.1| topoisomerase I, partial [Bembidion planatum]
Length = 247
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + +D K+ K G K + + ++ + + ++ K+
Sbjct: 142 LKEKIEQKREQI------VDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 196 EVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143709|gb|AFF58515.1| topoisomerase I, partial [Bembidion geniculatum]
Length = 247
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 153/238 (64%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKI+ D++ +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIDQKREQITDVQKQVKDAQRD---AKHGSVKEKVVYDKKKK------TLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LIKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143925|gb|AFF58623.1| topoisomerase I, partial [Sinechostictus alesmetana]
Length = 247
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER M +
Sbjct: 142 LKEKIEQKREQVTDAQKQVKDAQRD---AKHGSVKEKVIFDKKKK------LLER-MKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K++ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+ KF
Sbjct: 192 LVKLEVQETD---RDENKSIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRDKF 246
>gi|381143733|gb|AFF58527.1| topoisomerase I, partial [Bembidion jacksoniense]
Length = 239
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 78
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 139 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 191
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 192 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 238
>gi|381143731|gb|AFF58526.1| topoisomerase I, partial [Bembidion iridescens]
Length = 247
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDGLTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + D + + A++ G K + + ++ + + ++ K+
Sbjct: 142 LKEKIEQKREQISDAQRQVKDAQRDAKH------GSVKEKVVHDKKKKMLERLKEQLMKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 196 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143849|gb|AFF58585.1| topoisomerase I, partial [Bembidion semistriatum]
Length = 241
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143781|gb|AFF58551.1| topoisomerase I, partial [Bembidion obtusum]
Length = 245
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTLAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + D + L A++ G K + + ++ + + ++ K+
Sbjct: 140 LKEKIEQKREQITDGQKQLKDAQRDAKH------GSVKEKVVYDKKKKMLERLKDQLMKL 193
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 194 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143803|gb|AFF58562.1| topoisomerase I, partial [Bembidion poculare]
Length = 244
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143601|gb|AFF58461.1| topoisomerase I, partial [Bembidion (Hypsipezum) sp. 1 DRM-2012]
Length = 246
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL LN+ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLNELTXVDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIGD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRDKF 246
>gi|381143799|gb|AFF58560.1| topoisomerase I, partial [Bembidion planum]
Length = 244
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 78
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 139 LKEKIEQKREQIND-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 191
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 243
>gi|381143691|gb|AFF58506.1| topoisomerase I, partial [Bembidion escherichi]
Length = 246
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K++ALGTSK+NYLDP I+VAWCK++EVPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPXISVAWCKKYEVPIEKIYNKTQRDKF 246
>gi|380714833|gb|AFE02789.1| topoisomerase I, partial [Bembidion antiquum]
Length = 245
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 147/227 (64%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R +D +K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIDEVQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143635|gb|AFF58478.1| topoisomerase I, partial [Bembidion breve]
Length = 240
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 147/226 (65%), Gaps = 9/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNK 240
>gi|381143603|gb|AFF58462.1| topoisomerase I, partial [Bembidion (Notaphus) sp. 1 DRM-2012]
Length = 239
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 78
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 139 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 191
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 192 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 238
>gi|381143865|gb|AFF58593.1| topoisomerase I, partial [Bembidion sparsum]
Length = 225
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 147/226 (65%), Gaps = 9/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 7 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 66
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 67 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 126
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 127 LKEKIEQKREQIAD-------AQKQVKDAQRDAXHGSVKEKVVYDKKKKMLERLKEQLMK 179
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK
Sbjct: 180 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNK 225
>gi|381143923|gb|AFF58622.1| topoisomerase I, partial [Sinechostictus (Pseudolimnaeum) sp. 3
DRM-2012]
Length = 247
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 152/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER M +
Sbjct: 142 LKEKIEQKREQVTDAQKQVKDAQRD---AKHGSVKEKVIFDKKKK------LLER-MKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
++E E D +++ K++ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+ KF
Sbjct: 192 LVRLEVQETD---RDENKSIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRDKF 246
>gi|381143919|gb|AFF58620.1| topoisomerase I, partial [Pogonus chalceus]
Length = 236
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 149/226 (65%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 15 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 74
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 75 KVFRTYNASWTLQQQLDELTNADDSIAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 134
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A+K G K L + ++ + + +++++
Sbjct: 135 LKEKIDQKREQITDAQRQVKDAQKDAKH------GSVKEKLIYDKKKKMLDKLKDQLKRL 188
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ KT+ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 189 EVQETDRDENKTIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 234
>gi|380714837|gb|AFE02791.1| topoisomerase I, partial [Bembidion bellorum]
Length = 243
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 147/227 (64%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADXTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R +D A+K +D+ G + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIDEAQKQVKDAQRDAKHGSVXEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKXIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143801|gb|AFF58561.1| topoisomerase I, partial [Bembidion platynoides]
Length = 242
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|380714821|gb|AFE02783.1| topoisomerase I, partial [Bembidion balli]
Length = 245
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDGLTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + ++D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIED-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143663|gb|AFF58492.1| topoisomerase I, partial [Bembidion commotum]
gi|381143743|gb|AFF58532.1| topoisomerase I, partial [Bembidion lenae]
Length = 245
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQIAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143705|gb|AFF58513.1| topoisomerase I, partial [Bembidion gebleri turbatum]
Length = 241
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + +D K+ K G K + + ++ + + ++ K+
Sbjct: 142 LKEKIEQKREQI------VDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 196 EVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143779|gb|AFF58550.1| topoisomerase I, partial [Bembidion nitidum]
Length = 243
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143739|gb|AFF58530.1| topoisomerase I, partial [Bembidion laetum]
Length = 246
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 141 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 193
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 194 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 245
>gi|381143765|gb|AFF58543.1| topoisomerase I, partial [Bembidion mexicanum]
Length = 246
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143795|gb|AFF58558.1| topoisomerase I, partial [Bembidion perspicuum]
Length = 241
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 18 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 77
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 78 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 137
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 138 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 190
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 191 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 237
>gi|381143751|gb|AFF58536.1| topoisomerase I, partial [Bembidion lugubre]
gi|381143791|gb|AFF58556.1| topoisomerase I, partial [Bembidion pernotum]
Length = 247
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143611|gb|AFF58466.1| topoisomerase I, partial [Bembidion actuosum]
Length = 243
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 141 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 193
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 194 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 240
>gi|381143649|gb|AFF58485.1| topoisomerase I, partial [Bembidion (Hoquedela) cf. csikii
DRM-2012]
Length = 243
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNTDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 141 LKEKIEQKREQVTD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLMK 193
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 194 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 240
>gi|381143591|gb|AFF58456.1| topoisomerase I, partial [Asaphidion curtum]
Length = 245
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLEKLKEQLMK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIEKI+NK+ KF
Sbjct: 193 LEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIEKIYNKTQRDKF 244
>gi|381143715|gb|AFF58518.1| topoisomerase I, partial [Bembidion grapii]
Length = 240
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 147/226 (65%), Gaps = 9/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 928
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNK 240
>gi|380714839|gb|AFE02792.1| topoisomerase I, partial [Bembidion honestum]
Length = 239
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 147/225 (65%), Gaps = 9/225 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+N
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYN 239
>gi|381143811|gb|AFF58566.1| topoisomerase I, partial [Bembidion punctulatum]
Length = 243
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 150/230 (65%), Gaps = 15/230 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMEHKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLR---VDLDR-AKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAK 879
L EKIE + + D + D +R AK+G D K+K LER Q K
Sbjct: 142 LKEKIEQKREQINDAQKQVKDAERDAKRGSVKEKMVYDKKKK------MLERLKDQL-TK 194
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +E D +++ K +ALGTSK+NYLDP I+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEILETD---RDENKAIALGTSKLNYLDPXISVAWCKKYDVPIEKIYNKT 241
>gi|119602666|gb|EAW82260.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_b [Homo sapiens]
Length = 268
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 136/198 (68%), Gaps = 2/198 (1%)
Query: 475 VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGN 534
VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K ++++ + I+DG +EK+GN
Sbjct: 8 VIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGN 67
Query: 535 FRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVT 594
F++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE P G WKEV+ DNTVT
Sbjct: 68 FKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPA-GHQWKEVRSDNTVT 126
Query: 595 WLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDG 654
WLA W + + KY+ L S LKG++ +K+E AR+L+ ++ IR+ Y D+ SR+
Sbjct: 127 WLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREM 185
Query: 655 TRRQIAVATYLIDKLALR 672
RQ AVA Y IDK+ ++
Sbjct: 186 KTRQRAVALYFIDKVGVQ 203
>gi|381143879|gb|AFF58600.1| topoisomerase I, partial [Bembidion tigrinum]
Length = 246
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K L + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKLVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDP I+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPXISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143889|gb|AFF58605.1| topoisomerase I, partial [Bembidion vernale]
Length = 238
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 15 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 74
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 75 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 134
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + +D K+ K G K + + ++ + + ++ K+
Sbjct: 135 LKEKIDQKREQI------VDAQKQVKDAQRDAKHGSVKEKVVHDKKKKMLERLKEQLIKL 188
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 189 EVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 234
>gi|304273935|gb|ADM18405.1| topoisomerase I [Atanygnathus acuminatus]
Length = 241
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 150/239 (62%), Gaps = 13/239 (5%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T+ +N HL ELM GLTA
Sbjct: 11 FDFLGKDSIRYYNEVPVEKRVFKNLQIFMENKSSGDDLFDRLNTSVMNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L + T D +V KI Y RAN+ VAI+CNHQ V KTH M
Sbjct: 71 KVFRTYNASFTLQQQLAQLTNMDDNVQEKILSYNRANRAVAILCNHQXAVPKTHQKSMEN 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR---KRNLAPEALERKMAQTNAKI 880
L EKI+ K +KD + A K D KR K + E ++ + + ++
Sbjct: 131 LKEKIKXXKEAIKDAERQVKDAHK---------DAKRGSVKEKILYEKKKKMLERLKDQL 181
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
K+E K++ KT+ALGTSK+NYLDPRI+VAWCK++ VPI+KI+NK+ KF WA+D
Sbjct: 182 NKLEIQETDKDENKTIALGTSKLNYLDPRISVAWCKKYGVPIDKIYNKTQRDKFRWAID 240
>gi|189094087|gb|ACD75871.1| topoisomerase I [Asaphidion yukonense]
Length = 247
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLEKLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143627|gb|AFF58474.1| topoisomerase I, partial [Bembidion astrabadense]
Length = 244
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 141 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLREQLIK 193
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 194 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 240
>gi|381143933|gb|AFF58627.1| topoisomerase I, partial [Sloaneana lamingtonensis]
Length = 247
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
K FRTYNAS TL L++ T D + KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KTFRTYNASWTLQQQLDELTNSDDTIPEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A+K G K + + ++ + + ++ ++
Sbjct: 142 LKEKIDQKREQISDAQRQVKDAQKDAKH------GSVKEKVIYDKKKKMLERLKDQLVRL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
E +++ K++ALGTSK+NYLDPRI+VAWCK+H VPIEKI+NK+ KF
Sbjct: 196 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKHGVPIEKIYNKTQRDKF 246
>gi|381143937|gb|AFF58629.1| topoisomerase I, partial [Typhlocharis armatus]
Length = 245
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 148/227 (65%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAGGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRT+NAS TL LN+ T D VA KI Y RAN+ VAI+CNHQR+V K+H M +
Sbjct: 82 KVFRTFNASWTLQQQLNELTNPDDSVAEKILSYNRANRAVAILCNHQRSVPKSHEKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ K + + AKK KD+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDAKKEQIAE-------AKKQVKDAHKDAKHGSVKEKIVYDKKKKMLEKMKDQLVK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ KT++LGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 195 LEVQETDRDENKTISLGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 241
>gi|381143595|gb|AFF58458.1| topoisomerase I, partial [Bembidarenas reicheellum]
Length = 243
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 150/226 (66%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMESKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T + D + KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASYTLQQQLDELTNEDDSITEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A++ +G K + + ++++ + ++ K+
Sbjct: 142 LKEKIDQKREQIADAQRQVKDAQRDAK------NGSVKEKVIFDKKKKQLERMKDQLMKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPI+K++NK+
Sbjct: 196 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIDKVYNKT 241
>gi|189094065|gb|ACD75860.1| topoisomerase I [Prolixocupes lobiceps]
Length = 229
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 151/238 (63%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T+ LN HL ELM GLTA
Sbjct: 4 FDFLGKDSIRYYNEVPVEKRVFKNLQLFIENKSGEDDLFDRLNTSILNKHLNELMEGLTA 63
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V+ K+ Y RAN+ VA++CNHQR+V K H M +
Sbjct: 64 KVFRTYNASFTLQQQLDQLTNADDSVSEKMLSYNRANRAVAVLCNHQRSVPKGHEKSMEK 123
Query: 824 LTEK-------IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EK I +++ +KD + D AK+G D K+K LER Q
Sbjct: 124 LKEKIGTKRDQIAEMEKQVKDAQKD---AKRGSVKEKVVYDKKKKH------LERLREQL 174
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K++ALGTSK+NYLDPRITVAWCK++ VPIEK++NK+ KF
Sbjct: 175 -VKLEVAETD---RDENKSIALGTSKLNYLDPRITVAWCKKYGVPIEKVYNKTQRDKF 228
>gi|381143871|gb|AFF58596.1| topoisomerase I, partial [Bembidion stillaguamish]
Length = 247
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKLLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 246
>gi|381143629|gb|AFF58475.1| topoisomerase I, partial [Bembidion basicorne]
Length = 237
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 147/231 (63%), Gaps = 21/231 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 140 LKEKIEQKREQIVDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 189
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
K+E E D +++ K +ALGTSK+NYLDPRI VAWCK+++VPIEKI+N
Sbjct: 190 LIKLEVQETD---RDENKAIALGTSKLNYLDPRIXVAWCKKYDVPIEKIYN 237
>gi|381143585|gb|AFF58453.1| topoisomerase I, partial [Amerizus wingatei]
Length = 238
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 146/224 (65%), Gaps = 7/224 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 21 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 80
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 81 KVFRTYNASWTLQQQLDELTNKDDSVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 140
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A++ G K L + ++ + + ++ K+
Sbjct: 141 LKEKIDQKREQITDGQRQVKDAQRDAKH------GSVKEKLVYDKKKKMLERLRDQLVKL 194
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 927
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+N
Sbjct: 195 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYN 238
>gi|381143597|gb|AFF58459.1| topoisomerase I, partial [Bembidarenas setiventre]
Length = 243
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 147/226 (65%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDSLAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + +D K+ K G K + + ++ + + ++ K+
Sbjct: 140 LKEKIEQKREQI------VDAEKQVKEAQRDAKHGSVKEKVVFDKKKKLLDRLKEQLVKL 193
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 194 EVLETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 239
>gi|381143587|gb|AFF58454.1| topoisomerase I, partial [Asaphidion alaskanum]
Length = 243
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 149/232 (64%), Gaps = 9/232 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM LTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEALTA 78
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 139 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLEKLKDQLVK 191
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 192 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 243
>gi|381143683|gb|AFF58502.1| topoisomerase I, partial [Bembidion durangoense]
Length = 238
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 9/224 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIY 238
>gi|381143651|gb|AFF58486.1| topoisomerase I, partial [Bembidion (Plataphus) cf. curtulatum
DRM-2012]
Length = 238
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE + + +D K+ K G K + + ++ + + ++ K+
Sbjct: 142 LKEKIEQKREQI------VDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMKL 195
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+
Sbjct: 196 EVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIY 238
>gi|41056366|emb|CAA34500.2| topoisomerase I [Homo sapiens]
Length = 225
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 145/230 (63%), Gaps = 7/230 (3%)
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL
Sbjct: 1 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQ 60
Query: 779 MLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D
Sbjct: 61 QLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLAD 120
Query: 838 LRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVA 897
R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +A
Sbjct: 121 ARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIA 175
Query: 898 LGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
LGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F
Sbjct: 176 LGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 225
>gi|381143615|gb|AFF58468.1| topoisomerase I, partial [Bembidion affine]
Length = 242
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 149/238 (62%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 17 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 76
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 77 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 136
Query: 824 LT-------EKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
E+I D + +KD + D AK G D K+K LER Q
Sbjct: 137 XKEKIEQKREQIADAQKQVKDAQKD---AKHGSVKEKVVYDKKKK------MLERLKEQL 187
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 188 -IKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 241
>gi|381143661|gb|AFF58491.1| topoisomerase I, partial [Bembidion coloradense]
Length = 235
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 144/223 (64%), Gaps = 9/223 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI
Sbjct: 193 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKI 235
>gi|381143843|gb|AFF58582.1| topoisomerase I, partial [Bembidion scopulinum]
Length = 237
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 144/223 (64%), Gaps = 9/223 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKI 237
>gi|381143665|gb|AFF58493.1| topoisomerase I, partial [Bembidion complanulum]
Length = 234
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 145/224 (64%), Gaps = 9/224 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 18 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 77
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 78 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 137
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 138 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 190
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
+E +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+
Sbjct: 191 LEVQETDRDENKXIALGTSKLNYLDPRISVAWCKKYDVPIEKIY 234
>gi|381143581|gb|AFF58451.1| topoisomerase I, partial [Amerizus (Tiruka) sp. DRM-2012]
Length = 239
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 148/226 (65%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM LTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEALTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTLAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A++ +G K + + ++ + + ++ K+
Sbjct: 140 LKEKIDQKREQITDAQRQVKDAQRDA------KNGSVKEKVVHDKKKKLLERLKDQLVKL 193
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+
Sbjct: 194 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKT 239
>gi|381143637|gb|AFF58479.1| topoisomerase I, partial [Bembidion decorum subconvexum]
Length = 245
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 149/238 (62%), Gaps = 21/238 (8%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LT-------EKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
E+I D + +KD + D AK G D K+K LER Q
Sbjct: 140 XKEKIEQKREQITDAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLERLKEQL 190
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF 934
K+E E D +++ K +ALGTSK+NYLDPRI+VAWCK+++VPIEKI+NK+ KF
Sbjct: 191 -IKLEVQETD---RDENKAIALGTSKLNYLDPRISVAWCKKYDVPIEKIYNKTQRDKF 244
>gi|381143921|gb|AFF58621.1| topoisomerase I, partial [Serranillus sp. DRM-2012]
Length = 220
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 146/227 (64%), Gaps = 9/227 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
F FLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 1 FXFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLTELMEGLTA 60
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRT+NAS TL L + T + D +A KI Y RAN+ VA++CNHQR+V K+H+ M +
Sbjct: 61 KVFRTFNASSTLQEQLIELTNEDDSIAEKILSYNRANRAVAVLCNHQRSVPKSHAKSMEK 120
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K KD+ G K + ++ + + ++ K
Sbjct: 121 LKEKIDQKREQIAD-------AQKQVKDAQKDAXHGSVKEKVLYXKKKKMLERMKEQLVK 173
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
+E +++ KT+ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+
Sbjct: 174 LEVQETDRDENKTIALGTSKLNYLDPRISVAWCKKYNVPIEKIYNKT 220
>gi|381143915|gb|AFF58618.1| topoisomerase I, partial [Oopterus helmsi]
Length = 228
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 146/223 (65%), Gaps = 7/223 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTA
Sbjct: 12 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAIMNKHLNELMEGLTA 71
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T G+ A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 72 KVFRTYNASWTLQQQLDELTNGEDSDAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 131
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI+ + + D + + A+K G K + + ++ + + ++ K+
Sbjct: 132 LKEKIDQKRDQIGDAQRQVKDAQKDAKH------GSVKEKVIYDKKKKLLERLKEQLVKL 185
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPIEKI+
Sbjct: 186 EVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYKVPIEKIY 228
>gi|381143689|gb|AFF58505.1| topoisomerase I, partial [Bembidion errans]
Length = 235
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 142/221 (64%), Gaps = 9/221 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
+E +++ K +ALGTSK+NYLDPRI+VAWCK++EVPIE
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKYEVPIE 235
>gi|189094071|gb|ACD75863.1| topoisomerase I [Copelatus distinctus]
Length = 234
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 145/223 (65%), Gaps = 15/223 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K + DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAEGDDLFDRLNTQIMNKHLNELMDGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+ T + D V KI Y RAN+ VAI+CNHQR+V K H M +
Sbjct: 82 KVFRTYNASSTLQEQLDLLTNEDDSVTEKILSYNRANRAVAILCNHQRSVPKGHQKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKD---SDGKRKRNLAPEALERKMAQTNAK 879
L EKIE K + +++ + D AK K +K+ D K+K ALER Q
Sbjct: 142 LKEKIEQKKEHIAEMQKQVKDAAKDAKHGSVKEKVVHDKKKK------ALERLKDQ---- 191
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
++K+E +++ K++ALGTSK+NYLDPRI+VAWCK+++VPI
Sbjct: 192 LKKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPI 234
>gi|304273961|gb|ADM18418.1| topoisomerase I [Holisus sp. SC-2010]
Length = 231
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 140/226 (61%), Gaps = 7/226 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI Y N V+VE V+K + F K DD+FD+ +T LN HL ELM GLTA
Sbjct: 11 FDFLGKDSIXYXNEVQVEKRVFKNLKLFLENKSPGDDVFDRFNTTVLNKHLNELMEGLTA 70
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L K T D VA K+ Y RAN+ VA+ CNHQRTV K+H M
Sbjct: 71 KVFRTYNASFTLQQQLEKLTNADDTVAEKMLSYNRANRAVALXCNHQRTVPKSHQKSMEA 130
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKI K + D ++ ++ A++ G K + E ++ + + + ++ K+
Sbjct: 131 LKEKIASKKEAIADAKLAVNDAQRDAKS------GSVKEQVVYEKKKKMLQRLHDQLNKL 184
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 929
E +++ K +ALGTSK+NYLDPRI AWCK+ +V ++KI+NK+
Sbjct: 185 EIQETDRDENKAIALGTSKLNYLDPRIXXAWCKKIDVAMDKIYNKT 230
>gi|189094063|gb|ACD75859.1| topoisomerase I [Sialis sp. ALW-2008]
Length = 234
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 147/223 (65%), Gaps = 15/223 (6%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T+ +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAAGDDLFDRLNTSIMNKHLNELMDGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L+ T + D ++ KI Y RAN+ VAI+CNHQR+V K H M +
Sbjct: 82 KVFRTYNASSTLQEQLDLLTNEDDTLSEKILSYNRANRAVAILCNHQRSVPKGHQKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDL-DRAKKGKPPLMKD---SDGKRKRNLAPEALERKMAQTNAK 879
L EKIE + +++++ + D AK K +K+ D K+K ALER Q K
Sbjct: 142 LKEKIEQKREFIQEMQKXVKDAAKDAKHGSVKEKVVHDKKKK------ALERLRDQL-MK 194
Query: 880 IEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
+E E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPI
Sbjct: 195 LEVQETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPI 234
>gi|70939510|ref|XP_740287.1| topoisomerase I [Plasmodium chabaudi chabaudi]
gi|56517902|emb|CAH81857.1| topoisomerase I, putative [Plasmodium chabaudi chabaudi]
Length = 429
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 150/249 (60%), Gaps = 16/249 (6%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H G+IF PPY+ H + + YK ++ L P+ EE+AT + ++ TDY K KF N
Sbjct: 182 QWNYLEHRGIIFSPPYVQHNIPIFYKSIKIELNPKAEELATYWCSVIGTDYCTKDKFILN 241
Query: 462 FWNDWRKLLGKNHVIQ-------------NLEGCDFKPIYDWHQEQKEKKKQMSSEEKKA 508
F+ + L K+++I+ N + DF I + + ++++ + EEK+
Sbjct: 242 FFKTFINNLEKDNIIRRENEHKVKNGDISNFKFIDFMTIKEHLIKLRDERLNKTKEEKEE 301
Query: 509 LKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
K+ + ++E Y +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI
Sbjct: 302 DKKIRMEKELPYTFALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINI 361
Query: 569 GKDVPIPEC--PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
KD P P + G +W ++ HDN VTWLA++ D IN + KY FL+A S KG D
Sbjct: 362 SKDAPAPRLYDDMCGHNWGDIYHDNKVTWLAYYKDSIND-QIKYTFLSAQSKFKGYKDFL 420
Query: 627 KYEKARKLK 635
KYE ARKLK
Sbjct: 421 KYENARKLK 429
>gi|189094075|gb|ACD75865.1| topoisomerase I [Dineutus sublineatus]
Length = 234
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 145/226 (64%), Gaps = 21/226 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T+ +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTSIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHQKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + LKD + D AK+G +D K+K+ L+R Q
Sbjct: 142 LKEKIEQKREQVADAQRQLKDAQRD---AKRGSVKERVVADKKKKQ------LDRLRDQL 192
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 922
++E E D +++ K++ALGTSK+NYLDPRI+VAWCK+++VPI
Sbjct: 193 -VRLEVQETD---RDENKSIALGTSKLNYLDPRISVAWCKKYDVPI 234
>gi|260784949|ref|XP_002587526.1| hypothetical protein BRAFLDRAFT_237079 [Branchiostoma floridae]
gi|229272674|gb|EEN43537.1| hypothetical protein BRAFLDRAFT_237079 [Branchiostoma floridae]
Length = 299
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 181/326 (55%), Gaps = 33/326 (10%)
Query: 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 678
L+G+ D KYE ARKL + IRA Y +++ S++ RQ AVA Y IDKLALRAGNEKD
Sbjct: 1 LQGEKDWMKYETARKLHKCVDRIRAQYREEWKSKEMRIRQRAVALYFIDKLALRAGNEKD 60
Query: 679 DDE-ADTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQF 732
DE ADTVGCC+L+V ++ ++ ++FDFLGKDSI+Y N V VE V+K +
Sbjct: 61 SDEAADTVGCCSLRVEHINLHREHEGKEFVVEFDFLGKDSIRYHNFVAVEKKVFKNL--V 118
Query: 733 QTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVK 792
+ L L + L ++ L GL V + ++ D + G+ VA K
Sbjct: 119 WSPDHTGSCLL--LGSYLLCCGVQGLQVGLVCTVKQCLCSA---DPPFSP-PGEDSVAAK 172
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPL 852
I Y RAN+ VAI+CNHQR+V KT MS L K+ +++ + L
Sbjct: 173 ILSYNRANRAVAILCNHQRSVPKTFEKSMSNLQAKVGRKHHLIRICHIYLATC------- 225
Query: 853 MKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITV 912
R + E +++M + ++ K+E KE+ K +ALGTSK+NYLDPRI+V
Sbjct: 226 ---------RQMMLERKKKQMERLEEQLMKLEVQATDKEENKEIALGTSKLNYLDPRISV 276
Query: 913 AWCKRHEVPIEKIFNKSLLAKFAWAM 938
A K H +EKI+NK+ KFAWA+
Sbjct: 277 ACGKSH---VEKIYNKTQRDKFAWAL 299
>gi|378793108|gb|AFC56778.1| topoisomerase I, partial [Nebria lacustris]
Length = 231
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 12/237 (5%)
Query: 686 GCCTLKVGNVECIPPNKLK-----FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQND 740
GCC+L+V ++ K FDFLGKDSI+Y N V VE V+K + F K D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 741 DLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRA 799
DLFD+L+TA +N HL ELM GLTAKVFRTYNAS TL L++ T D +A KI Y RA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSMAEKILSYNRA 120
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
N+ VAI+CNHQR+V K+H M +L EKI+ + ++D++ + A++ G
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENIQDMQRQVKDAQRDAKH------GS 174
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
K + + ++ + + ++ K+E +++ K++ALGTSK+NYLDPRI+VAWCK
Sbjct: 175 VKEKVVYDKKKKTLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCK 231
>gi|33284832|emb|CAE17514.1| DNA topoisomerase I subunit A [Leishmania major]
Length = 200
Score = 186 bits (472), Expect = 5e-44, Method: Composition-based stats.
Identities = 89/159 (55%), Positives = 119/159 (74%), Gaps = 1/159 (0%)
Query: 399 GQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
G+++W TL HNGV+FPP Y PHG+ + Y G+E +TPE+EEVATMFAVM + DY + F
Sbjct: 42 GERRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVF 101
Query: 459 RENFWNDWRKLLGK-NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ WR++LGK H I+ LE CDF+PIY W+ Q+EKK + EEK+A+KE+++ +
Sbjct: 102 WRNFFESWREILGKRQHPIRRLELCDFEPIYQWYLVQREKKLSRTKEEKEAIKEKQDAEA 161
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
E Y + + DG +E+V NFRVEPPGLFRGRG+HP MGKLK
Sbjct: 162 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLK 200
>gi|381143711|gb|AFF58516.1| topoisomerase I, partial [Bembidion gordoni]
Length = 236
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 9/222 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKLLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
+E +++ K +ALGTSK+NYLDP I VAWCK+++VPIEK
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPXIXVAWCKKYDVPIEK 236
>gi|76155148|gb|AAX26392.2| SJCHGC05060 protein [Schistosoma japonicum]
Length = 330
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 160/292 (54%), Gaps = 21/292 (7%)
Query: 328 KVEKKADDDDHIPISQRMKNSA--PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQ 385
+V+ + DDD IP+S ++ + P ++ +V+ + + +K+ K +
Sbjct: 39 RVQSFSSDDDDIPLSAKLVQMSKKPKLEPAVSPQPRDKNHGDQRKERSRTTHEKIKKQNA 98
Query: 386 YSKSTK--------------MLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGK 429
S TK D KW L H G +F PPY LP V Y K
Sbjct: 99 LSSPTKGRKQEKPEEEVWRWWEEQKKDDGVKWKFLEHKGPLFAPPYERLPSSVHFHYDSK 158
Query: 430 EVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKN--HVIQNLEGCDFKPI 487
+ L+ EEVA +A MLD DY K F NF++DW K + + I++L CDF+ +
Sbjct: 159 PMKLSDHAEEVAGFYARMLDHDYTTKEVFNHNFFHDWVKTMNEEERRTIKSLSKCDFQEM 218
Query: 488 YDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRG 547
+ + + E++K + EEK+ +KEE + + +Y + I+DG K+++GNFR+EPPGLFRGRG
Sbjct: 219 HQYFLKLSEERKNRTKEEKQKIKEENLQIQNEYGYCILDGHKQRIGNFRIEPPGLFRGRG 278
Query: 548 EHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFW 599
HPKMG LKKRI P D+ IN KD +P P G WKEV+HDN+VTWLA W
Sbjct: 279 NHPKMGMLKKRIMPEDVIINCSKDSKVP-APPKGHKWKEVRHDNSVTWLACW 329
>gi|380714835|gb|AFE02790.1| topoisomerase I, partial [Bembidion arenobilis]
Length = 232
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 9/218 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE R ++ A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIE-------QKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 920
+E +++ K++ALGTSK+NYLDPRI+VAWCK+++V
Sbjct: 195 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDV 232
>gi|381143645|gb|AFF58483.1| topoisomerase I, partial [Bembidion castor]
Length = 230
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
+E +++ K +ALGTSK+NYLDPRI+VAWCK++
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|304273995|gb|ADM18435.1| topoisomerase I [Quediocafus insolitus]
Length = 205
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 136/216 (62%), Gaps = 21/216 (9%)
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VA 790
F K DDLFD+L+T +N HL ELM LTAKVFRTYNAS TL L+K T + D ++
Sbjct: 2 FMENKSPGDDLFDRLNTGVMNKHLNELMEALTAKVFRTYNASFTLQQQLDKLTNEDDSIS 61
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE-------DLKGVLKDLRVDLD 843
KI Y RAN+ VAI+CNHQR V K H M L EKI+ D + +KD + D
Sbjct: 62 EKILSYNRANRAVAILCNHQRAVPKGHQKSMEALKEKIQTKKESIADAERQVKDAQKD-- 119
Query: 844 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 903
AK+G D K+K LER M + AK+E E D K++ KT+ALGTSK+
Sbjct: 120 -AKRGSVKEKVVFDKKKK------MLER-MREQLAKLEIQETD---KDENKTIALGTSKL 168
Query: 904 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 939
NYLDPRI+VAWCK++EVPI+KI+NK+ KF WA+D
Sbjct: 169 NYLDPRISVAWCKKYEVPIDKIYNKTQRDKFRWAID 204
>gi|381143837|gb|AFF58579.1| topoisomerase I, partial [Bembidion sciakyi sciakyi]
Length = 226
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 136/214 (63%), Gaps = 9/214 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 20 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 79
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 80 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 139
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 140 LKEKIEQKREQVAD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIK 192
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
+E +++ K++ALGTSK+NYLDPRI+VAWCK
Sbjct: 193 LEVQETDRDENKSIALGTSKLNYLDPRISVAWCK 226
>gi|381143825|gb|AFF58573.1| topoisomerase I, partial [Bembidion rolandi]
Length = 228
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
+E +++ K +ALGTSK+NYLDPRI+VAWCK
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCK 228
>gi|381143917|gb|AFF58619.1| topoisomerase I, partial [Phrypeus rickseckeri]
Length = 218
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 7/213 (3%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 12 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTXIMNKHLNELMEGLTA 71
Query: 765 KVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T + D +A KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 72 KVFRTYNASWTLQQQLDELTNEDDSLAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 131
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
L EKIE K + D + + A+K G K + + ++ + + ++ ++
Sbjct: 132 LKEKIEQKKEQIADAQKQVKEAQKDAKH------GSVKEKIIYDKKKKMLEKMKEQLVRL 185
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
E +++ K++ALGTSK+NYLDPRI+VAWCK
Sbjct: 186 EVQETDRDENKSIALGTSKLNYLDPRISVAWCK 218
>gi|16555214|gb|AAL23664.1| topoisomerase I [Oryza sativa]
Length = 105
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 94/105 (89%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTA
Sbjct: 1 FDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTA 60
Query: 765 KVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
KVFRTYNASITLD ML++ T DGDV KI VYQ+ANKEVAI+CNH
Sbjct: 61 KVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAILCNH 105
>gi|381143827|gb|AFF58574.1| topoisomerase I, partial [Bembidion ruficolle]
Length = 228
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 137/220 (62%), Gaps = 21/220 (9%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMESKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQT 876
L EKIE D + +KD + D AK G D K+K LER + +
Sbjct: 142 LKEKIEQKREQIADAQKQVKDAQRD---AKHGSVKEKVVYDKKKK------MLER-LKEQ 191
Query: 877 NAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
K+E +E D +++ K +ALGTSK+NYLDPRI+VAWCK
Sbjct: 192 LLKLEVLETD---RDENKAIALGTSKLNYLDPRISVAWCK 228
>gi|381143653|gb|AFF58487.1| topoisomerase I, partial [Bembidion (Philochtemphanes) cf.
exquisitum DRM-2012]
Length = 228
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL +++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQVDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKDQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
+E +++ K +ALGTSK+NYLDPRI+VAWCK
Sbjct: 195 LEVQETDRDENKAIALGTSKLNYLDPRISVAWCK 228
>gi|381143853|gb|AFF58587.1| topoisomerase I, partial [Bembidion simplex]
Length = 233
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 136/219 (62%), Gaps = 9/219 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 921
+E +++ K ALGTSK+NYLDP I V WCK+++VP
Sbjct: 195 LEVQETDRDENKAXALGTSKLNYLDPXIXVXWCKKYDVP 233
>gi|430732221|gb|AGA55511.1| topoisomerase, partial [Carabus deyrollei]
Length = 205
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 137/212 (64%), Gaps = 9/212 (4%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T +GD VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTTEGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDL-DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMER 885
KIE K + ++ + D + K +K+ K+ A + L+ ++ + N + E
Sbjct: 121 KIEQKKDAIHEMERQVKDAQRAAKHGSVKEKVVYDKKKKALDRLKDQLVKLNVQ----ET 176
Query: 886 DMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
D K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 177 D---KDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|381143589|gb|AFF58455.1| topoisomerase I, partial [Asaphidion cf. griseum DRM-2012]
Length = 213
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 7 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 66
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 67 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 126
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKI+ + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 127 LKEKIDQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLEKLKEQLMK 179
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
+E +++ K +ALGTSK+NYLDPRI+VAWCK
Sbjct: 180 LEVMETDRDENKAIALGTSKLNYLDPRISVAWCK 213
>gi|430732229|gb|AGA55515.1| topoisomerase, partial [Carabus irregularis]
Length = 205
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 135/215 (62%), Gaps = 15/215 (6%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTSADDSVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLD----RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 882
KIE K + ++ + +AK+G D KRK AL+ K+ K+E
Sbjct: 121 KIEQKKDSISEMERQVQDAQRQAKRGSVKEKVVYDKKRK------ALD-KLKDQLVKLEV 173
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
E D K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 174 QETD---KDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732219|gb|AGA55510.1| topoisomerase, partial [Carabus rutilans]
gi|430732225|gb|AGA55513.1| topoisomerase, partial [Carabus rugosus]
Length = 205
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 133/211 (63%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T DGD VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNDGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ K+
Sbjct: 121 KIEQKKDSILEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALEKLKDQLVKLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732215|gb|AGA55508.1| topoisomerase, partial [Carabus nemoralis]
Length = 205
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 134/211 (63%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T DGD VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNDGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ + G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDSIAEMERQVQDAQR------QAKRGSVKEKVVYDKKKKALDKLKDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|397508523|ref|XP_003824702.1| PREDICTED: DNA topoisomerase 1-like [Pan paniscus]
Length = 211
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 131/213 (61%), Gaps = 7/213 (3%)
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKID 794
K+ DDLFD+L T LN HL++LM LTAKVF TYNASITL L + T D ++ KI
Sbjct: 4 KQPKDDLFDRLSTGILNKHLQDLMESLTAKVFHTYNASITLQQQLEELTALDENIPAKIL 63
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMK 854
Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MK
Sbjct: 64 SYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVMK 122
Query: 855 DSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAW 914
D+ K+ +A++R Q + K+E E+ K +ALGTSK+NYLDP+ITV W
Sbjct: 123 DAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDPEENKQIALGTSKLNYLDPKITVPW 178
Query: 915 CKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
CK+ VPIEKI+NK+ KFAWA+D D ++ F
Sbjct: 179 CKKWGVPIEKIYNKTQREKFAWAIDTADKDYEF 211
>gi|430732231|gb|AGA55516.1| topoisomerase, partial [Carabus concolor]
Length = 205
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 136/212 (64%), Gaps = 9/212 (4%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLK-GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMER 885
KIE K +L+ R D ++ K +K+ K+ A + L+ ++ + N + E
Sbjct: 121 KIEQKKDSILEMERQVKDAQRQAKHGSVKEKVVYDKKKKALDRLKEQLVRLNVQ----ET 176
Query: 886 DMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
D K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 177 D---KDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732217|gb|AGA55509.1| topoisomerase, partial [Carabus monilis]
Length = 205
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 134/211 (63%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LG+DSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGRDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T DGD VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNDGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ + G K + + ++ + + ++ K+
Sbjct: 121 KIEQKKDSILEMERQVQDAQR------QAKRGSVKEKVVYDKKKKALDKLKDQLVKLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|371944525|gb|AEX62349.1| DNA topoisomerase 1b [Moumouvirus Monve]
Length = 214
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Query: 586 EVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAY 645
++ HD TV WLA + D I K KYV+L A S LK +SD K++ ARKLK I IR
Sbjct: 2 DIIHDQTVEWLAAYKDTITGK-MKYVWLGAQSDLKAKSDLNKFDLARKLKRKIKQIRKEN 60
Query: 646 TKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKF 705
S D RQIA A Y ID ALR GNEK DDE DTVG +L++ +V + N+++
Sbjct: 61 ENALRSDDKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRIEHVHLLENNRVRL 120
Query: 706 DFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
DFLGKDS++Y T+E++ VY+ + +F GK D LFD + +N +L+ M LTAK
Sbjct: 121 DFLGKDSVRYNRTLEIDTQVYQNLKEFMEGKSPQDQLFDLITPTDVNKYLQSFMKNLTAK 180
Query: 766 VFRTYNAS 773
VFRTYNAS
Sbjct: 181 VFRTYNAS 188
>gi|332811202|ref|XP_003308650.1| PREDICTED: DNA topoisomerase 1-like [Pan troglodytes]
Length = 211
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 130/209 (62%), Gaps = 7/209 (3%)
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQR 798
DDLFD+L+T LN HL++LM LTAKVF TYNASITL L + T D ++ KI Y R
Sbjct: 8 DDLFDRLNTGILNKHLQDLMESLTAKVFHTYNASITLQQQLEELTALDENIPAKILSYNR 67
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDG 858
AN+ VAI+CNHQR KT M L KI+ K L D R DL AK + KD+
Sbjct: 68 ANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVRKDAKT 126
Query: 859 KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDP+ITV WCK+
Sbjct: 127 KKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPKITVPWCKKW 182
Query: 919 EVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
VPIEKI+NK+ KFAWA+D D ++ F
Sbjct: 183 GVPIEKIYNKTQREKFAWAIDTADKDYEF 211
>gi|381143599|gb|AFF58460.1| topoisomerase I, partial [Bembidion (Hoquedela) sp. 1 DRM-2012]
Length = 205
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 132/212 (62%), Gaps = 9/212 (4%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
FLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKV
Sbjct: 1 FLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKV 60
Query: 767 FRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
FRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L
Sbjct: 61 FRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLK 120
Query: 826 EKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEKME 884
EKIE + + D A+K +D+ G K + + ++ + + ++ K+E
Sbjct: 121 EKIEQKREQVTD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLMKLE 173
Query: 885 RDMKTKEDLKTVALGTSKINYLDPRITVAWCK 916
+++ K +ALGTSK+NYLDP I+VAWCK
Sbjct: 174 VQETDRDENKAIALGTSKLNYLDPXISVAWCK 205
>gi|16555216|gb|AAL23665.1| topoisomerase I [Spinacia oleracea]
Length = 102
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 91/102 (89%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
FLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKV
Sbjct: 1 FLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKV 60
Query: 767 FRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
FRTYNASITLD ML++ T DGDV KI VYQ+ANKEVAI+CN
Sbjct: 61 FRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAILCN 102
>gi|430732223|gb|AGA55512.1| topoisomerase, partial [Carabus melancholicus]
Length = 205
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 133/211 (63%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ + G K + + ++ + + ++ K+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQR------QAKRGSVKEKVVYDKKKKALDKLKDQLVKLEVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732233|gb|AGA55517.1| topoisomerase, partial [Carabus fairmairei]
Length = 205
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 135/212 (63%), Gaps = 9/212 (4%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D V KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTDADDTVPEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLK-GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMER 885
KIE K +L+ R D ++ K +K+ K+ A + L+ ++ + N + E
Sbjct: 121 KIEQKKDSILEMERQVKDAQRQAKHGSVKEKVVYDKKKKALDRLKEQLVRLNVQ----ET 176
Query: 886 DMKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
D K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 177 D---KDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732191|gb|AGA55496.1| topoisomerase, partial [Carabus riffensis]
Length = 205
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 131/211 (62%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDTIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|238598109|ref|XP_002394520.1| hypothetical protein MPER_05582 [Moniliophthora perniciosa FA553]
gi|215463661|gb|EEB95450.1| hypothetical protein MPER_05582 [Moniliophthora perniciosa FA553]
Length = 265
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 123/178 (69%), Gaps = 7/178 (3%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KWTTL HNGVIFPPPY LP VKM Y GK +NL PE EEVA +A +++TD+ Q
Sbjct: 79 DSSVKWTTLEHNGVIFPPPYEPLPSNVKMKYDGKVLNLPPESEEVAGFYAALIETDHAQD 138
Query: 456 PKFRENFWNDWRKLLG----KNHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
F +NF+ DW K+L +N + + + + CDF+P+Y++ + +K KKK MS+ EKK +K
Sbjct: 139 ATFNKNFFEDWLKVLQDHPPRNGIKVTDFDKCDFRPMYEYFEAEKAKKKAMSAAEKKEIK 198
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
++K++ E KY +DG KEKVGNFRVEPPGLFRGRGEHPK G LK PS I + +
Sbjct: 199 KQKDEAEAKYTHCFLDGRKEKVGNFRVEPPGLFRGRGEHPKKGSLKVIGSPSLIALGL 256
>gi|430732175|gb|AGA55488.1| topoisomerase, partial [Carabus lusitanicus helluo]
gi|430732179|gb|AGA55490.1| topoisomerase, partial [Carabus macrocephalus macrocephalus]
gi|430732187|gb|AGA55494.1| topoisomerase, partial [Carabus lusitanicus lusitanicus]
gi|430732195|gb|AGA55498.1| topoisomerase, partial [Carabus macrocephalus barcelecoanus]
gi|430732205|gb|AGA55503.1| topoisomerase, partial [Carabus dufouri baguenai]
Length = 205
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 131/211 (62%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732171|gb|AGA55486.1| topoisomerase, partial [Carabus ghiliani]
gi|430732197|gb|AGA55499.1| topoisomerase, partial [Carabus guadarramus]
gi|430732199|gb|AGA55500.1| topoisomerase, partial [Carabus guadarramus]
gi|430732201|gb|AGA55501.1| topoisomerase, partial [Carabus guadarramus]
Length = 205
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 131/211 (62%), Gaps = 7/211 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCKK 205
>gi|430732193|gb|AGA55497.1| topoisomerase, partial [Carabus lusitanicus brevis]
Length = 204
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 130/210 (61%), Gaps = 7/210 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCK 916
K++ K++ALGTSK+NYLDPRI+VAWCK
Sbjct: 175 ETDKDENKSIALGTSKLNYLDPRISVAWCK 204
>gi|253987317|gb|ACT52163.1| topoisomerase I [Bursaphelenchus xylophilus]
Length = 177
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 120/177 (67%), Gaps = 7/177 (3%)
Query: 676 EKDDDEA-DTVGCCTLKVGNV---ECIPPNK--LKFDFLGKDSIQYVNTVEVELPVYKAI 729
EKD DEA DTVGCC+L+ +V E + K ++FDFLGKDSI+Y N V VE V+K +
Sbjct: 1 EKDTDEAADTVGCCSLRCEHVTLNEELDGKKYVVEFDFLGKDSIRYYNKVPVEKQVFKNL 60
Query: 730 GQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGD 788
F+ K+ DDLFD+LDT+ LN+HL+ LMPGLTAKVFRTYNASITL L + T
Sbjct: 61 KIFKEDKEPGDDLFDRLDTSTLNSHLRSLMPGLTAKVFRTYNASITLQNQLEELTNPKAS 120
Query: 789 VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA 845
V K+ Y RAN+ VA++CNHQR V KTH M L KI+D K LK+ ++ L++A
Sbjct: 121 VNEKMLSYNRANRMVAVLCNHQRAVPKTHEKSMENLENKIKDKKTELKEAKLALEKA 177
>gi|381143617|gb|AFF58469.1| topoisomerase I, partial [Bembidion anchonoderum]
Length = 202
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 130/215 (60%), Gaps = 21/215 (9%)
Query: 709 GKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
GKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFR
Sbjct: 1 GKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFR 60
Query: 769 TYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 827
TYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +L EK
Sbjct: 61 TYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEK 120
Query: 828 IE-------DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKI 880
IE D + LKD + D AK G D K+K LER Q K+
Sbjct: 121 IEQKREQITDAQKQLKDAQRD---AKHGSVKEKVVYDKKKK------MLERLKEQL-IKL 170
Query: 881 EKMERDMKTKEDLKTVALGTSKINYLDPRITVAWC 915
E E D +++ K +ALGTSK+NYLDP I+VAWC
Sbjct: 171 EVQETD---RDENKAIALGTSKLNYLDPXISVAWC 202
>gi|304273939|gb|ADM18407.1| topoisomerase I [Atrecus punctiventris]
Length = 200
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 132/215 (61%), Gaps = 25/215 (11%)
Query: 714 QYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNAS 773
+Y N V VE V+K + F K DDLFD+L+TA +N HL ELM GLTAKVFRTYNAS
Sbjct: 1 RYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTAKVFRTYNAS 60
Query: 774 ITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE--- 829
TL L K T + D ++ KI Y RAN+ VAI+CNHQR V K H M +L EKI+
Sbjct: 61 FTLQQQLEKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHEKSMEKLKEKIDLKR 120
Query: 830 ----DLKGVLKDLRVDLDRAKKG--KPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM 883
D + +KD + D AK+G K L+ D K LER M + AK+E
Sbjct: 121 ESISDAERQVKDAQKD---AKRGSVKEKLIYDKKKK--------MLER-MREQLAKLEIQ 168
Query: 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
E D +++ KT+ALGTSK+NYLDPRI+VAWCK++
Sbjct: 169 ETD---RDENKTIALGTSKLNYLDPRISVAWCKKY 200
>gi|430732211|gb|AGA55506.1| topoisomerase, partial [Carabus problematicus]
Length = 204
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 130/210 (61%), Gaps = 7/210 (3%)
Query: 709 GKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFR 768
GKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFR
Sbjct: 1 GKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFR 60
Query: 769 TYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 827
TYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EK
Sbjct: 61 TYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEK 120
Query: 828 IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM 887
IE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 IEQKKDSIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQE 174
Query: 888 KTKEDLKTVALGTSKINYLDPRITVAWCKR 917
K++ K++ALGTSK+NYLDPRI+VAWCK+
Sbjct: 175 TDKDENKSIALGTSKLNYLDPRISVAWCKK 204
>gi|381143633|gb|AFF58477.1| topoisomerase I, partial [Bembidion bimaculatum]
Length = 218
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 9/207 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 19 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 78
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 79 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 138
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K +D+ G K + + ++ + + ++ K
Sbjct: 139 LKEKIEQKREQITD-------AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMK 191
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPR 909
+E +++ K +ALGTSK+NYLDPR
Sbjct: 192 LEVQETDRDENKAIALGTSKLNYLDPR 218
>gi|381143913|gb|AFF58617.1| topoisomerase I, partial [Ocys quinquestriatus]
Length = 217
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 9/203 (4%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTA
Sbjct: 22 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTA 81
Query: 765 KVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H+ M +
Sbjct: 82 KVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEK 141
Query: 824 LTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDS-DGKRKRNLAPEALERKMAQTNAKIEK 882
L EKIE + + D A+K KD+ G K + + ++ + + ++ K
Sbjct: 142 LKEKIEQKREQITD-------AQKQVKDAQKDAKHGSVKEKIVYDKKKKSLERLKDQLMK 194
Query: 883 MERDMKTKEDLKTVALGTSKINY 905
+E +++ K +ALGTSK+NY
Sbjct: 195 LEVQETDRDENKAIALGTSKLNY 217
>gi|302773463|ref|XP_002970149.1| hypothetical protein SELMODRAFT_410935 [Selaginella moellendorffii]
gi|300162660|gb|EFJ29273.1| hypothetical protein SELMODRAFT_410935 [Selaginella moellendorffii]
Length = 163
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 102/153 (66%), Gaps = 19/153 (12%)
Query: 796 YQRANKEV--AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
Y RANKE AI+ + KI +LK ++L DL + KKGKPP+
Sbjct: 17 YSRANKEYPKAIVLRWKDWA-------------KIAELKTWREELATDLGKVKKGKPPVH 63
Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
+ KR E LE+K+AQT+A+I KM D+ KEDLKTVALGTSKI Y+DPRITVA
Sbjct: 64 STA----KRPPTTEQLEKKLAQTDARIAKMTLDLSVKEDLKTVALGTSKIKYMDPRITVA 119
Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
WCKRHE+PIEK+FNKSLLAKF WAM+V+P FRF
Sbjct: 120 WCKRHEIPIEKVFNKSLLAKFPWAMNVEPNFRF 152
>gi|430732227|gb|AGA55514.1| topoisomerase, partial [Carabus rugosus]
Length = 185
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VA 790
F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL L++ T DGD VA
Sbjct: 5 FMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNDGDTVA 64
Query: 791 VKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKP 850
KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE K + ++ + A++
Sbjct: 65 EKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDSIMEMERQVQDAQRQAK 124
Query: 851 PLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRI 910
G K + + ++ + + ++ K+ K++ K++ALGTSK+NYLDPRI
Sbjct: 125 R------GSVKEKVVYDKKKKALEKLKDQLVKLNVQETDKDENKSIALGTSKLNYLDPRI 178
Query: 911 TVAWCKR 917
+VAWCK+
Sbjct: 179 SVAWCKK 185
>gi|430732173|gb|AGA55487.1| topoisomerase, partial [Carabus dufouri]
Length = 196
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 122/202 (60%), Gaps = 7/202 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLDP 908
K++ K++ALGTSK+NYLDP
Sbjct: 175 ETDKDENKSIALGTSKLNYLDP 196
>gi|430732177|gb|AGA55489.1| topoisomerase, partial [Carabus dufouri]
Length = 195
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 121/201 (60%), Gaps = 7/201 (3%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTXADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KIE K + ++ + A++ G K + + ++ + + ++ ++
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQ 174
Query: 887 MKTKEDLKTVALGTSKINYLD 907
K++ K++ALGTSK+NYLD
Sbjct: 175 ETDKDENKSIALGTSKLNYLD 195
>gi|12654247|gb|AAH00943.1| Unknown (protein for IMAGE:3448011), partial [Homo sapiens]
Length = 176
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 7/181 (3%)
Query: 768 RTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L
Sbjct: 1 RTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQT 60
Query: 827 KIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERD 886
KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E
Sbjct: 61 KIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQ 115
Query: 887 MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFR 945
+E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++
Sbjct: 116 ATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYE 175
Query: 946 F 946
F
Sbjct: 176 F 176
>gi|405953969|gb|EKC21526.1| DNA topoisomerase 1 [Crassostrea gigas]
Length = 325
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 6/197 (3%)
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG-NEKDDDEA 682
DR K AR+L +I +R Y D S+D RQ AVA Y ID R+G +K DE+
Sbjct: 60 DRRKLNNARRLSRFIDEVRKKYGNDLESKDPKERQRAVALYFIDMFVFRSGWKKKRGDES 119
Query: 683 DTVGCCTLKVGNVECIP-PNK---LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
++ GCC L+ +++ + N+ ++F+F GKD+I Y VEVE VY + FQ GK
Sbjct: 120 ESAGCCLLRKKHMKLVKNANQKFLVEFNFSGKDAIPYHKVVEVEKIVYLNLKAFQKGKSD 179
Query: 739 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQ 797
D +F+ ++ +NA+LK +M GLT++VFRTY+AS ++ L + T D + KI ++
Sbjct: 180 EDYVFNLIEANFVNAYLKSIMDGLTSRVFRTYHASQMMEKKLAEFTRADDSESRKIKSFK 239
Query: 798 RANKEVAIICNHQRTVS 814
+AN EVAII NH+R V+
Sbjct: 240 KANNEVAIILNHKRQVA 256
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 897 ALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
L TS + Y+DPRI V+WC++ +P+EK++++ L KF WAM +F+F
Sbjct: 276 GLETSILYYIDPRIVVSWCRKWNIPVEKVYSEFQLEKFDWAMSAKADFKF 325
>gi|381143901|gb|AFF58611.1| topoisomerase I, partial [Geocharidius sp. DRM-2012]
Length = 155
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T +N HL ELM GLTA
Sbjct: 10 FDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKEGADDLFDRLNTQIMNKHLNELMEGLTA 69
Query: 765 KVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSR 823
KVFRTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K+H M +
Sbjct: 70 KVFRTYNASWTLQQQLDELTNPDDSVAEKILSYNRANRAVAILCNHQRSVPKSHEKSMEK 129
Query: 824 LTEKIE 829
L EKI+
Sbjct: 130 LKEKIQ 135
>gi|430732183|gb|AGA55492.1| topoisomerase, partial [Carabus problematicus]
Length = 189
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIE 829
KIE
Sbjct: 121 KIE 123
>gi|430732213|gb|AGA55507.1| topoisomerase, partial [Carabus amplipennis]
Length = 188
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 768 RTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTE 826
RTYNAS TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L E
Sbjct: 61 RTYNASWTLXQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 827 KIE 829
KIE
Sbjct: 121 KIE 123
>gi|186513885|ref|NP_001119063.1| DNA binding;DNA topoisomerase type Is [Arabidopsis thaliana]
gi|332659842|gb|AEE85242.1| DNA binding;DNA topoisomerase type Is [Arabidopsis thaliana]
Length = 69
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/68 (89%), Positives = 64/68 (94%)
Query: 879 KIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
KIEKMERDM+TKEDLKTVALGTSKINY+DPRITVAWCKRHE PIEKIFNKSLL KFAWAM
Sbjct: 2 KIEKMERDMQTKEDLKTVALGTSKINYMDPRITVAWCKRHEAPIEKIFNKSLLEKFAWAM 61
Query: 939 DVDPEFRF 946
DV+P F F
Sbjct: 62 DVEPHFTF 69
>gi|194688974|gb|ACF78571.1| unknown [Zea mays]
Length = 84
Score = 131 bits (329), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/84 (73%), Positives = 75/84 (89%)
Query: 698 IPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKE 757
+PPN+++FDFLGKDSI+Y NTVEVE VYKAI F+ GKK DLFDK+DT++LNAHLK+
Sbjct: 1 MPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKD 60
Query: 758 LMPGLTAKVFRTYNASITLDGMLN 781
LMPGLTAKVFRTYNASITLDG+++
Sbjct: 61 LMPGLTAKVFRTYNASITLDGIVS 84
>gi|17061914|dbj|BAB72187.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061916|dbj|BAB72188.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061918|dbj|BAB72189.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061920|dbj|BAB72190.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061922|dbj|BAB72191.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061924|dbj|BAB72192.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061926|dbj|BAB72193.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061928|dbj|BAB72194.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061930|dbj|BAB72195.1| topoisomerase I [Cryptococcus bacillisporus]
Length = 270
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
FLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T LN HL +MPGLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAK 60
Query: 766 VFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
VFRTYNAS T L K +G VA KI Y AN++VAI+CNHQ++VSK ++
Sbjct: 61 VFRTYNASWTFQEQLRKTPKNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAE 120
Query: 826 EKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQ 875
+KI LK LR+ L + KK P L +D ++ E +ER A+
Sbjct: 121 DKIRALKYQRLKLRLQLFSLNPKIKKKHPELAEDES-----DMDDEFMERHEAE 169
>gi|17061940|dbj|BAB72200.1| topoisomerase I [Cryptococcus bacillisporus]
Length = 270
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
FLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T LN HL +MPGLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAK 60
Query: 766 VFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
VFRTYNAS T L K +G VA KI Y AN++VAI+CNHQ++VSK ++
Sbjct: 61 VFRTYNASWTFQEQLKKTPKNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAE 120
Query: 826 EKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQ 875
+KI LK LR+ L + KK P L +D ++ E +ER A+
Sbjct: 121 DKIRALKYQRLKLRLQLFSLDPKIKKKHPELAEDES-----DMDDEFMERHEAE 169
>gi|17061932|dbj|BAB72196.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061934|dbj|BAB72197.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061936|dbj|BAB72198.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061938|dbj|BAB72199.1| topoisomerase I [Cryptococcus bacillisporus]
Length = 270
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
FLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T LN HL +MPGLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAK 60
Query: 766 VFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
VFRTYNAS T L K +G VA KI Y AN++VAI+CNHQ++VSK ++
Sbjct: 61 VFRTYNASWTFQEQLKKTPKNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAE 120
Query: 826 EKIEDLKGVLKDLRVDLD----RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQ 875
+KI LK LR+ L + KK P L +D ++ E +ER A+
Sbjct: 121 DKIRALKYQRLKLRLQLFSLNPKIKKKYPELAEDES-----DMDDEFMERHEAE 169
>gi|17061908|dbj|BAB72184.1| topoisomerase I [Cryptococcus neoformans var. grubii]
gi|17061910|dbj|BAB72185.1| topoisomerase I [Cryptococcus neoformans var. neoformans]
gi|17061912|dbj|BAB72186.1| topoisomerase I [Cryptococcus neoformans A/D]
Length = 270
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAK 765
FLGKDS+++ VEV+ V+K I F+ KK+ DD+FD+L T LN HL +MPGLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTTTLLNKHLNGMMPGLTAK 60
Query: 766 VFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLT 825
VFRTYNAS T L +G VA KI Y AN++VAI+CNHQ++VSK ++
Sbjct: 61 VFRTYNASWTFQEQLKNTPTNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAE 120
Query: 826 EKIEDLKGVLKDLRVDL----DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIE 881
+KI LK LR+ L + KK P L +D ++ E +ER A+ +E
Sbjct: 121 DKIRALKYQRLKLRLQLFSLNPKIKKKHPELAEDES-----DVDDEFMERHEAEL---LE 172
Query: 882 KMERDMKTKEDLKTVAL 898
K + K K D V L
Sbjct: 173 KALENAKKKWDTDNVKL 189
>gi|430732185|gb|AGA55493.1| topoisomerase, partial [Carabus lusitanicus helluo]
Length = 180
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 713 IQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 772
I+Y N V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNA
Sbjct: 1 IRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNA 60
Query: 773 SITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL 831
S TL L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE
Sbjct: 61 SWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQK 120
Query: 832 KGVLKDL 838
K + ++
Sbjct: 121 KDSIMEM 127
>gi|74183500|dbj|BAE36613.1| unnamed protein product [Mus musculus]
Length = 144
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 92/149 (61%), Gaps = 6/149 (4%)
Query: 799 ANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDG 858
AN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+
Sbjct: 1 ANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKT 59
Query: 859 KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRH 918
K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+
Sbjct: 60 KKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKW 115
Query: 919 EVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
VPIEKI+NK+ KFAWA+D+ D ++ F
Sbjct: 116 GVPIEKIYNKTQREKFAWAIDMTDEDYEF 144
>gi|430732209|gb|AGA55505.1| topoisomerase, partial [Carabus problematicus]
Length = 180
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 7/185 (3%)
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 2 VPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 61
Query: 779 MLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKD 837
L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE K + +
Sbjct: 62 QLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDSIME 121
Query: 838 LRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVA 897
+ + A++ G K + + ++ + + ++ ++ K++ K++A
Sbjct: 122 MERQVQDAQRQAKR------GSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDENKSIA 175
Query: 898 LGTSK 902
LGTSK
Sbjct: 176 LGTSK 180
>gi|430732181|gb|AGA55491.1| topoisomerase, partial [Carabus macrocephalus cantabricus]
Length = 179
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 719 VEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778
V VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL
Sbjct: 2 VPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 61
Query: 779 MLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
L++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE
Sbjct: 62 QLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIE 113
>gi|430732203|gb|AGA55502.1| topoisomerase, partial [Carabus lusitanicus latus]
Length = 175
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 721 VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
VE V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL L
Sbjct: 1 VEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQL 60
Query: 781 NKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
++ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE
Sbjct: 61 DELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIE 110
>gi|430732189|gb|AGA55495.1| topoisomerase, partial [Carabus riffensis]
Length = 174
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 722 ELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
E V+K + F K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL L+
Sbjct: 1 EKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 60
Query: 782 KGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
+ T D VA KI Y RAN+ VAI+CNHQR+V K H+ M +L EKIE K + ++
Sbjct: 61 ELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDTIMEM 118
>gi|238604470|ref|XP_002396207.1| hypothetical protein MPER_03600 [Moniliophthora perniciosa FA553]
gi|215468335|gb|EEB97137.1| hypothetical protein MPER_03600 [Moniliophthora perniciosa FA553]
Length = 238
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 711 DSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTY 770
DSI+Y N V ++ V+K I F+ K +D+LFD+++TA LN HL M GLTAKVFRTY
Sbjct: 1 DSIRYYNRVAIDTQVFKNIKIFKENKNDDDNLFDRVNTAMLNKHLNSEMKGLTAKVFRTY 60
Query: 771 NASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
NAS T +L++ +G + K++ Y +AN+ VAI+CNHQR+V KTH M ++ K +
Sbjct: 61 NASHTFQTLLDESHLEGATLQEKLNAYNKANRLVAILCNHQRSVPKTHDQSMQKMAYKYK 120
Query: 830 DLKGVLKDLRVDL 842
LK LR L
Sbjct: 121 ALKYDRMKLRHQL 133
>gi|253740233|gb|ACT34665.1| topoisomerase family protein, partial [Caenorhabditis brenneri]
Length = 159
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 21/172 (12%)
Query: 780 LNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L K T D VA KI Y RAN++VAI+CNHQR+VSKTH M +L +KI+D K +K+
Sbjct: 4 LQKLTNPKDSVAAKILSYNRANRQVAILCNHQRSVSKTHDQAMEKLEQKIKDKKKEVKEA 63
Query: 839 RVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVAL 898
L A R E ++K + +++K++ K++ K +AL
Sbjct: 64 EEALKHA----------------RGADKEKAQKKYDRLKEQLKKLKIARTDKDENKQIAL 107
Query: 899 GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV----DPEFRF 946
GTSK+NYLDPRITVAWCK H+VP+EK+F K+ KF WA+D+ D +F F
Sbjct: 108 GTSKLNYLDPRITVAWCKEHDVPLEKVFTKTHREKFRWAIDMTNSSDEKFVF 159
>gi|440911948|gb|ELR61565.1| DNA topoisomerase I, mitochondrial [Bos grunniens mutus]
Length = 1021
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 123/434 (28%), Positives = 184/434 (42%), Gaps = 124/434 (28%)
Query: 416 PYLPHGVKMLYKG-------KEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRK 468
P +P G++ +G + +N++ EEVAT + LD +Y K F+ NF++DWRK
Sbjct: 339 PDVPQGLQPWQRGPAAEPVREALNVSLAAEEVATFYGKKLDHEYT-KEVFQNNFFSDWRK 397
Query: 469 LLG--KNHVIQNLEGCDFKPIYDW----------------------------------HQ 492
+ + VI++L+ CDF I+ H
Sbjct: 398 EMTAEERRVIKHLDRCDFTEIHRLCGQDCFPEGPVQGGEAADFELCAPNLDVFKKCCVHL 457
Query: 493 EQKEKK--KQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP----------- 539
E E++ ++ + LKEE+ K ++++ +I+DG +EK G+F+ EP
Sbjct: 458 EHVEQRPCRRHGVLLMQKLKEEEEKLQQEFGCSILDGHREKTGSFKTEPLLPWLATHGIH 517
Query: 540 -----PGLFRGRGEHPKMGKLKKRIQPSDIT-INIGKDVPIPECPIPGESWKEVKHDNTV 593
G G+ + G ++R+ D + ++ VP WK+V + TV
Sbjct: 518 PRGSSEGACHGQELRARGGGTRERLGQRDGSETDLALAVPTAVGEEGVWLWKDVGCNCTV 577
Query: 594 TWLAFWNDPINPKEF-KYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSR 652
WLA W + N + F KYV L S LK Y S
Sbjct: 578 MWLAAWME--NVQNFIKYVTLNPGSKLK------------------------YWTAGTSP 611
Query: 653 DGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDF 707
+ RQ AVA Y IDK ++ GCC+L+V + + P P+ ++FDF
Sbjct: 612 EMRTRQRAVALYFIDK------TGNGEEGGGLGGCCSLRVEHFQLYPEASGSPDVVEFDF 665
Query: 708 LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 767
LGKDSI+ N V VE KL TA LN HL++ GLTA+VF
Sbjct: 666 LGKDSIRSYNRVLVE----------------------KL-TASLNRHLQDPTDGLTARVF 702
Query: 768 RTYNASITLDGMLN 781
RTYN S+ L G L
Sbjct: 703 RTYNTSVMLQGQLQ 716
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 890 KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
K++ K VALGTS++ LDPRI V WCK+ EVP+EK++ K+ K WA+D+ P F
Sbjct: 939 KKESKQVALGTSELICLDPRIGVTWCKKSEVPVEKVY-KTQREKLTWALDMPPANNF 994
>gi|357467033|ref|XP_003603801.1| Heat shock 70 kDa protein [Medicago truncatula]
gi|355492849|gb|AES74052.1| Heat shock 70 kDa protein [Medicago truncatula]
Length = 270
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 82/133 (61%), Gaps = 37/133 (27%)
Query: 792 KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851
K DVY ANK+VAIICNHQ +VSK HS Q+S+L EKI++L+ LK L++DL+R ++
Sbjct: 61 KKDVYHNANKQVAIICNHQCSVSKIHSEQISKLNEKIDELQADLKKLKIDLERDRE---- 116
Query: 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 911
K++QT+AKI+KM+ DM TKEDLKTVAL
Sbjct: 117 --------------------KISQTSAKIKKMQHDMHTKEDLKTVAL------------- 143
Query: 912 VAWCKRHEVPIEK 924
VA CKRHEVPIEK
Sbjct: 144 VACCKRHEVPIEK 156
>gi|361069013|gb|AEW08818.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159616|gb|AFG62270.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159618|gb|AFG62271.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159620|gb|AFG62272.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159622|gb|AFG62273.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159624|gb|AFG62274.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159626|gb|AFG62275.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159628|gb|AFG62276.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159630|gb|AFG62277.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159632|gb|AFG62278.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159634|gb|AFG62279.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159636|gb|AFG62280.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159638|gb|AFG62281.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159640|gb|AFG62282.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159642|gb|AFG62283.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159644|gb|AFG62284.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159646|gb|AFG62285.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159648|gb|AFG62286.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
gi|383159650|gb|AFG62287.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
Length = 54
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/54 (92%), Positives = 54/54 (100%)
Query: 893 LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
LKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSLLAKFAWAMDV+P++RF
Sbjct: 1 LKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWAMDVEPDYRF 54
>gi|340378351|ref|XP_003387691.1| PREDICTED: hypothetical protein LOC100640755 [Amphimedon
queenslandica]
Length = 1559
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 786 DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA 845
D V KI Y RAN+ VA++CNHQRT KT QMS L KI + + D +
Sbjct: 1403 DDTVNEKILSYNRANRAVAVLCNHQRTAPKTFDTQMSNLQAKITAKEEAILDAKK---EI 1459
Query: 846 KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINY 905
KK K L SD K ++ L E+ +++ + +++K+E KE+ K +ALGTSK+NY
Sbjct: 1460 KKMKKELKGTSDSKLQKKL--ESKVKQLPKLEEQLKKLEIQATDKEENKEIALGTSKLNY 1517
Query: 906 LDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
LDPRI+V+WCK+ VPIEK++N++ KFAWA+++ D F F
Sbjct: 1518 LDPRISVSWCKKWGVPIEKVYNRTQREKFAWAIEMADETFVF 1559
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
TVTWLA W + I + KYV L +S LKG+ D KYE ++LK I IR Y D S
Sbjct: 506 TVTWLASWTENIQG-QIKYVMLNPTSRLKGEKDLAKYETVKRLKGRIEEIRRNYESDLKS 564
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIP-----PNKLKF 705
R+ A + KLAL AGNEKD DE ADTVGCC+L+V +++ + ++F
Sbjct: 565 RET-----AGGCSVFHKLALGAGNEKDADEAADTVGCCSLRVEHIKLHEELDGKSDMVEF 619
Query: 706 DFLGKDSIQYVNTVE 720
DFLGKDSI+Y N V+
Sbjct: 620 DFLGKDSIRYYNKVQ 634
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 786 DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRL 824
D V KI Y RAN+ VA++CNHQRT KT QMS L
Sbjct: 635 DDTVNEKILSYNRANRAVAVLCNHQRTAPKTFDTQMSNL 673
>gi|361069015|gb|AEW08819.1| Pinus taeda anonymous locus CL1794Contig1_03 genomic sequence
Length = 54
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/54 (90%), Positives = 54/54 (100%)
Query: 893 LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
LKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSLLAKFAW+MDV+P++RF
Sbjct: 1 LKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVEPDYRF 54
>gi|430732207|gb|AGA55504.1| topoisomerase, partial [Carabus problematicus]
Length = 137
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 736 KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKID 794
K DDLFD+L+T +N HL ELM GLTAKVFRTYNAS TL L++ T D VA KI
Sbjct: 1 KSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKIL 60
Query: 795 VYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
Y RAN+ VAI+CNHQR+V K H+ M +L EKIE K + ++
Sbjct: 61 SYNRANRAVAILCNHQRSVPKGHAKSMDKLKEKIEQKKDSIMEM 104
>gi|194766099|ref|XP_001965162.1| GF23753 [Drosophila ananassae]
gi|190617772|gb|EDV33296.1| GF23753 [Drosophila ananassae]
Length = 240
Score = 107 bits (268), Expect = 2e-20, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 401 KKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKF 458
+KWTTL HNG +F Y LP V Y+ + L P EE+AT++A +++ F
Sbjct: 17 QKWTTLSHNGPLFVDHYQALPKEVAFYYEDLPLKLNPTAEELATLYAKFMNSPLAITDTF 76
Query: 459 RENFWNDWRKLLGK--NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQ 516
ENF+ D++ L + I + E CDF I + Q Q+ ++++ + +
Sbjct: 77 NENFFKDFQSHLSRALRRQILSFELCDFTKIAFYIQGQQGVQRKLMTPMMR--------- 127
Query: 517 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPE 576
Y + +DG + +V +F + P L+R G PK G +K RIQP D+ IN ++ P
Sbjct: 128 -NHYGYCTIDGKRHRVPHFSFDGPSLYRRSG--PKYGMVKPRIQPEDVNIN-SQENGAPG 183
Query: 577 CPIPGESWKEVKHDNTVTWLAFWNDPIN 604
P G +WK V HD V WL W D ++
Sbjct: 184 AP-DGHTWKSVIHDRRVDWLWSWTDALS 210
>gi|297683810|ref|XP_002819561.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Pongo abelii]
Length = 313
Score = 104 bits (260), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Query: 784 TGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLD 843
+ + A KI Y RAN+ VA++CNHQR T M L KI+ K +V
Sbjct: 155 SAEDSTAAKILSYNRANRVVAVLCNHQRATPSTFEKSMQNLQTKIQ-----AKKEQVAEA 209
Query: 844 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 903
RA+ + + G K E R + + ++ ++ KE+ K VALGTSK+
Sbjct: 210 RAELRRARAEHKAQGDDKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKL 269
Query: 904 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
NYLDPRI++AWCKR VP+EKI++K+ +FAWA+ + E F F
Sbjct: 270 NYLDPRISIAWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 313
>gi|326516458|dbj|BAJ92384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 72
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 51/57 (89%)
Query: 869 LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
+E+K++Q KIEKME D KTKEDLKTVALGTSKINYLDPRITVAWCK HEVPIEK+
Sbjct: 15 IEKKISQIETKIEKMEMDKKTKEDLKTVALGTSKINYLDPRITVAWCKTHEVPIEKV 71
>gi|356543084|ref|XP_003539993.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
Length = 84
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 56/72 (77%), Gaps = 5/72 (6%)
Query: 383 NSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVAT 442
+S+YSK+TK+LP +GDGQ K TTLVHN VIF PPY PHGVKMLYKGK EQEEVAT
Sbjct: 15 SSEYSKATKLLPSAGDGQNKRTTLVHNAVIF-PPYQPHGVKMLYKGKPA----EQEEVAT 69
Query: 443 MFAVMLDTDYMQ 454
M+A M DTD +
Sbjct: 70 MYAAMRDTDRLH 81
>gi|393795530|ref|ZP_10378894.1| 2-alkenal reductase, partial [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 148
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW TL HNG++FPP Y HG+K+ KG+ V++ QEE+ +A DT Y Q F++N
Sbjct: 2 KWKTLQHNGILFPPAYEAHGIKIKIKGENVDIDLNQEEMIYQWAKKKDTPYAQDKVFQKN 61
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL----KEEKNKQE 517
F +D+ K L + E DF Y ++K+ ++ M+ EEKKAL K+ + K
Sbjct: 62 FTSDFAKTLPAKFKNISYEDIDFSHAYKIVDKEKDIREMMTKEEKKALALKRKQLREKLV 121
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLF 543
+KY AI+DG + V N+ EPPG+F
Sbjct: 122 QKYGKAIMDGKEVDVANYMAEPPGIF 147
>gi|32813236|emb|CAE11800.1| topoisomerase I subunit A [Leishmania panamensis]
Length = 88
Score = 96.3 bits (238), Expect = 8e-17, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 61/88 (69%)
Query: 683 DTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDL 742
DTVGCC+L+V +++ + N ++FDFLGKDSI+Y N V V VY + +F K D+
Sbjct: 1 DTVGCCSLRVEHIQLMSDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGTDI 60
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTY 770
FD+L+ +LN HLK M GL+AKVFRTY
Sbjct: 61 FDQLNPTQLNDHLKSFMNGLSAKVFRTY 88
>gi|7331174|gb|AAF60308.1| topoisomerase I [Leishmania donovani]
Length = 89
Score = 94.7 bits (234), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/86 (51%), Positives = 60/86 (69%)
Query: 685 VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
VGCC+L+V +++ +P N ++FDFLGKDSI+Y N V V VY + +F K D+FD
Sbjct: 4 VGCCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFD 63
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTY 770
+L+ +LN HLK M GL+AKVFRTY
Sbjct: 64 QLNPTQLNDHLKSFMDGLSAKVFRTY 89
>gi|63101759|gb|AAH95049.1| Top1l protein [Danio rerio]
Length = 321
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P EEVAT F+ MLD +Y K FR
Sbjct: 209 KWKFLEHKGPVFAPPYEPLPSNVKFYYDGKHMKLSPNAEEVATFFSKMLDHEYTTKDIFR 268
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHQEQKEKKKQMS 502
+NF+ DWRK + I +L CDF + ++ + Q E +K M+
Sbjct: 269 KNFFKDWRKEMTSEEKSKITDLNKCDFSNMSEYFKAQSEARKAMT 313
>gi|2897591|emb|CAA50293.1| topoisomerase I [Mus musculus]
Length = 115
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 832 KGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKE 891
K L D R DL AK +MKD+ K+ +A++R Q + K+E +E
Sbjct: 5 KDQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDRE 59
Query: 892 DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F
Sbjct: 60 ENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 115
>gi|339808|gb|AAA61208.1| DNA topoisomerase I (EC 5.99.1.2), partial [Homo sapiens]
Length = 109
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 72/113 (63%), Gaps = 6/113 (5%)
Query: 835 LKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLK 894
L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K
Sbjct: 2 LADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENK 56
Query: 895 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 946
+ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F
Sbjct: 57 QIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 109
>gi|89266899|emb|CAJ82195.1| novel protein similar to topoisomerase (DNA) I top1 [Xenopus
(Silurana) tropicalis]
Length = 335
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVA+ FA MLD +Y K FR
Sbjct: 226 KWKFLEHEGPVFAPPYEPLPDSVKFYYDGKPLPLSLQAEEVASFFAKMLDHEYTTKEIFR 285
Query: 460 ENFWNDWRK--LLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEK 506
N++ DWRK L + VI +L CDF ++ +++ + E+KK S E+K
Sbjct: 286 NNYFMDWRKEMTLEERMVITDLAKCDFTEMFTYYKGKMEEKKNKSKEDK 334
>gi|74211521|dbj|BAE26493.1| unnamed protein product [Mus musculus]
Length = 291
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLL 470
+NF+ DWRK +
Sbjct: 278 KNFFKDWRKEM 288
>gi|349603771|gb|AEP99515.1| DNA topoisomerase 1-like protein, partial [Equus caballus]
Length = 75
Score = 80.1 bits (196), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 879 KIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAM 938
++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+
Sbjct: 7 QLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAI 66
Query: 939 DV-DPEFRF 946
D+ D ++ F
Sbjct: 67 DMADEDYEF 75
>gi|20072751|gb|AAH27453.1| TOP1MT protein, partial [Homo sapiens]
Length = 101
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 9/88 (10%)
Query: 860 RKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
+KR L E L+ ++AQ + + KE+ K VALGTSK+NYLDPRI++AWCKR
Sbjct: 22 KKRRLL-EKLQEQLAQLSVQ-------ATDKEENKQVALGTSKLNYLDPRISIAWCKRFR 73
Query: 920 VPIEKIFNKSLLAKFAWAMDVDPE-FRF 946
VP+EKI++K+ +FAWA+ + E F F
Sbjct: 74 VPVEKIYSKTQRERFAWALAMAGEDFEF 101
>gi|343477090|emb|CCD11997.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 238
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
P +E + + ++ + E ++ K+D KTV+LGTSK+NY+DPRI +W K H VPI KI
Sbjct: 159 PRDIEATLKRYEDRLNREENMIRIKDDNKTVSLGTSKVNYIDPRIVCSWAKEHNVPITKI 218
Query: 926 FNKSLLAKFAWAMDVDPEFRF 946
F+ +L KF WAM+ +F F
Sbjct: 219 FSSTLQKKFPWAMEAS-DFSF 238
>gi|302823507|ref|XP_002993406.1| hypothetical protein SELMODRAFT_136971 [Selaginella moellendorffii]
gi|300138837|gb|EFJ05591.1| hypothetical protein SELMODRAFT_136971 [Selaginella moellendorffii]
Length = 63
Score = 79.3 bits (194), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 46/63 (73%)
Query: 705 FDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTA 764
FDFLGKDS +Y N V V VY AI F+ GKK+ DLFDKLDT+ LNAHLK+ M GLT
Sbjct: 1 FDFLGKDSTRYQNFVVVNKEVYDAIHNFKKGKKEGADLFDKLDTSNLNAHLKKYMQGLTV 60
Query: 765 KVF 767
KVF
Sbjct: 61 KVF 63
>gi|413953606|gb|AFW86255.1| putative NAC domain transcription factor superfamily protein,
partial [Zea mays]
Length = 181
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 883 MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF 926
ME + K KEDLK VALGTSK+NY D RITVAWCKRHEVPIEK+F
Sbjct: 1 MEMNKKIKEDLKAVALGTSKVNYFDSRITVAWCKRHEVPIEKVF 44
>gi|297788621|ref|XP_002862382.1| hypothetical protein ARALYDRAFT_920810 [Arabidopsis lyrata subsp.
lyrata]
gi|297307841|gb|EFH38640.1| hypothetical protein ARALYDRAFT_920810 [Arabidopsis lyrata subsp.
lyrata]
Length = 82
Score = 78.2 bits (191), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 7/80 (8%)
Query: 870 ERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKIN---YLDPRITVAWCKRHEVPIEKIF 926
ER +AQ N KI+KME+ + K+D+KTV LG SK+ L + VAW K HEVPIE
Sbjct: 7 ERMIAQHNVKIKKMEKLVHEKDDVKTVVLGKSKMIVTWLLGSLLAVAWFKCHEVPIE--- 63
Query: 927 NKSLLAKFAWAMDVDPEFRF 946
KSLLAKFAWAM +P F+F
Sbjct: 64 -KSLLAKFAWAMVAEPGFKF 82
>gi|340056113|emb|CCC50442.1| putative DNA topoisomerase type IB small subunit (PMID:12810956)
[Trypanosoma vivax Y486]
Length = 277
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
P +E + + ++ + E ++ K+D KTV+LGTSKINY+DPRI +W + H VPI KI
Sbjct: 198 PRDIEAAVRRYEERLNREENMIRIKDDNKTVSLGTSKINYIDPRIVCSWAREHNVPISKI 257
Query: 926 FNKSLLAKFAWAMDVDPEFRF 946
F+ ++ KF WAM + F F
Sbjct: 258 FSATIQKKFPWAMGAE-NFSF 277
>gi|302805168|ref|XP_002984335.1| hypothetical protein SELMODRAFT_120288 [Selaginella moellendorffii]
gi|300147723|gb|EFJ14385.1| hypothetical protein SELMODRAFT_120288 [Selaginella moellendorffii]
Length = 68
Score = 77.0 bits (188), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 39/44 (88%)
Query: 882 KMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
KM D+ KEDLKTVALGTSKINY+DP ITVAWCK+HE+P+EK+
Sbjct: 2 KMTLDLSVKEDLKTVALGTSKINYMDPPITVAWCKQHEIPVEKV 45
>gi|34365062|emb|CAE45727.1| DNA topoisomerase I subunit B [Leishmania panamensis]
Length = 269
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 51/76 (67%)
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
P + + + + ++ + E ++ K+D K V+LGTSKINY+DPRI +W K +VPI K+
Sbjct: 190 PNDIGKALVRYRERLNREENVIRIKDDNKAVSLGTSKINYIDPRIVCSWAKAQDVPISKV 249
Query: 926 FNKSLLAKFAWAMDVD 941
F+ ++L KF WAM+ +
Sbjct: 250 FSATILKKFPWAMNAE 265
>gi|302805166|ref|XP_002984334.1| hypothetical protein SELMODRAFT_19423 [Selaginella moellendorffii]
gi|300147722|gb|EFJ14384.1| hypothetical protein SELMODRAFT_19423 [Selaginella moellendorffii]
Length = 61
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 45/61 (73%)
Query: 707 FLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766
FLGKDS +Y N+V V VY AI F+ GKK+ DLFDKLDT+ LNAHLK+ + GLT KV
Sbjct: 1 FLGKDSTRYQNSVVVNEEVYYAIYNFKKGKKEGVDLFDKLDTSNLNAHLKKYIQGLTVKV 60
Query: 767 F 767
F
Sbjct: 61 F 61
>gi|154331758|ref|XP_001561696.1| DNA topoisomerase type IB small subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059016|emb|CAM41488.1| DNA topoisomerase type IB small subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 269
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
P + + + + ++ + E ++ K+D K V+LGTSKINY+DPRI +W K +VPI K+
Sbjct: 190 PSDIGKALVRYRERLNREENVIRIKDDNKAVSLGTSKINYIDPRIVCSWAKAQDVPISKV 249
Query: 926 FNKSLLAKFAWAMDVD 941
F+ ++L KF WAM +
Sbjct: 250 FSATILKKFPWAMSAE 265
>gi|407402955|gb|EKF29331.1| hypothetical protein MOQ_006892 [Trypanosoma cruzi marinkellei]
Length = 267
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 866 PEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 925
P +E + + ++ + E ++ K+D K V+LGTSK+NY+DPRI +W K + VPI +I
Sbjct: 188 PSNVELALQRYEERLNREENMIRIKDDNKAVSLGTSKVNYIDPRIVCSWAKEYNVPIGRI 247
Query: 926 FNKSLLAKFAWAMDVDPEFRF 946
F+ +L KF WAM + F F
Sbjct: 248 FSATLQKKFPWAMGAE-NFSF 267
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,840,101,177
Number of Sequences: 23463169
Number of extensions: 654670539
Number of successful extensions: 3408685
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 23545
Number of HSP's that attempted gapping in prelim test: 3172465
Number of HSP's gapped (non-prelim): 169125
length of query: 946
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 794
effective length of database: 8,792,793,679
effective search space: 6981478181126
effective search space used: 6981478181126
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 82 (36.2 bits)