Query 002260
Match_columns 946
No_of_seqs 275 out of 586
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a31_A Protein (topoisomerase 100.0 2E-203 7E-208 1699.6 32.6 552 383-946 28-591 (591)
2 2b9s_A Topoisomerase I-like pr 100.0 4E-160 1E-164 1315.8 39.7 426 384-812 4-432 (432)
3 1ois_A DNA topoisomerase I; DN 100.0 3.2E-99 1E-103 769.4 18.6 213 401-615 3-223 (223)
4 3m4a_A Putative type I topoiso 100.0 1.6E-78 5.5E-83 655.6 13.9 263 537-816 8-287 (346)
5 2h7g_X DNA topoisomerase 1; ty 100.0 3.6E-76 1.2E-80 631.6 14.2 261 541-817 3-273 (314)
6 2b9s_B DNA topoisomerase I-lik 100.0 9.3E-36 3.2E-40 250.9 0.1 62 884-946 1-62 (62)
7 1vcc_A DNA topoisomerase I; DN 97.4 4.6E-05 1.6E-09 66.8 1.6 58 551-614 13-76 (77)
8 4a8e_A XER A, probable tyrosin 95.3 0.046 1.6E-06 54.6 8.6 120 659-811 122-254 (292)
9 1ae9_A Lambda integrase; DNA r 95.3 0.036 1.2E-06 52.1 7.4 116 659-811 23-159 (179)
10 1xo0_A Recombinase CRE; CRE re 94.9 0.032 1.1E-06 56.2 6.3 121 660-811 142-298 (324)
11 1z1b_A Integrase; protein-DNA 94.8 0.05 1.7E-06 56.4 7.4 118 659-811 199-335 (356)
12 1z19_A Integrase; protein-DNA 94.4 0.08 2.7E-06 52.5 7.5 117 659-812 126-263 (283)
13 3nkh_A Integrase; alpha-fold, 94.4 0.13 4.5E-06 50.7 9.0 121 659-810 57-214 (244)
14 1a0p_A Site-specific recombina 94.2 0.089 3E-06 52.2 7.5 103 659-777 133-254 (290)
15 1aih_A HP1 integrase; DNA inte 92.1 0.27 9.2E-06 46.2 6.7 113 657-811 25-141 (170)
16 2a3v_A Site-specific recombina 89.6 0.43 1.5E-05 49.0 6.1 118 661-811 124-295 (320)
17 1ysm_A Calcyclin-binding prote 43.1 40 0.0014 30.0 5.7 58 826-898 3-64 (77)
18 2k48_A Nucleoprotein; viral pr 37.9 22 0.00076 33.5 3.4 67 818-889 34-100 (107)
19 2cto_A Novel protein; high mob 36.7 11 0.00038 34.2 1.2 56 462-524 21-76 (93)
20 3hnw_A Uncharacterized protein 35.2 61 0.0021 31.4 6.2 53 818-887 81-133 (138)
21 1gmj_A ATPase inhibitor; coile 29.2 1.2E+02 0.004 27.7 6.4 19 867-885 61-79 (84)
22 3gs2_B Chromobox protein homol 28.7 17 0.00059 27.3 0.9 10 538-547 21-30 (30)
23 3mq7_A Bone marrow stromal ant 27.3 2.4E+02 0.0083 27.1 8.5 11 771-781 25-35 (121)
24 4h22_A Leucine-rich repeat fli 26.7 1.2E+02 0.0039 28.6 6.1 59 818-893 29-87 (103)
25 3itf_A Periplasmic adaptor pro 26.4 1.8E+02 0.006 28.5 7.7 23 862-884 117-139 (145)
26 3hnw_A Uncharacterized protein 26.4 1.3E+02 0.0044 29.2 6.7 54 820-890 76-129 (138)
27 2ic6_A Nucleocapsid protein; h 24.6 41 0.0014 30.2 2.6 68 817-889 3-70 (78)
28 3htk_A Structural maintenance 21.9 1.9E+02 0.0066 23.5 6.1 54 817-887 3-56 (60)
29 2zqm_A Prefoldin beta subunit 20.8 2.1E+02 0.0071 25.7 6.7 28 819-846 20-47 (117)
30 1go4_E MAD1 (mitotic arrest de 20.7 2E+02 0.0068 26.8 6.5 76 819-894 12-98 (100)
No 1
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=100.00 E-value=2e-203 Score=1699.60 Aligned_cols=552 Identities=50% Similarity=0.850 Sum_probs=435.0
Q ss_pred ccccCccccCCCCCCCCccccceeeeccccCCCCCC--CCcceEEEcCeeccCChhhHHHHHHHHHhcCCCCCChhhHHh
Q 002260 383 NSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRE 460 (946)
Q Consensus 383 ~~~~~~~~~~~~~~~~g~~KW~tLeHnGv~FpP~Y~--P~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~k~~F~~ 460 (946)
..+||.. +..++|+ ||+|||||||+|||||+ ||||+|+|||+||+|||+|||||||||+||+|+|+++++||+
T Consensus 28 ~~~wwe~----~~~~~~~-kW~tLeHnG~~Fpp~YeplP~~V~~~Ydg~pv~L~~~~EEvAtf~a~ml~t~~~~~~~F~~ 102 (591)
T 1a31_A 28 KWKWWEE----ERYPEGI-KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK 102 (591)
T ss_dssp -----------------C-CCSCEEECCCBCCCCCCCCCTTCCCEETTEECCCCHHHHHHHHHHHTTTTSGGGGCHHHHH
T ss_pred hhhcccc----cCCCCCc-ceeEeeecceecCCcccCCCCCCceeECCEeccCCHHHHHHHHHHHHhcCCcccccHHHHH
Confidence 3456654 4445565 99999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhC--CCCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEEcCceeeecCcccC
Q 002260 461 NFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVE 538 (946)
Q Consensus 461 NFf~D~r~~l~--~~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~vDG~kekVGNFrvE 538 (946)
|||+||+++|. +++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+||||+|+|||||||
T Consensus 103 NFf~df~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~s~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfriE 182 (591)
T 1a31_A 103 NFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIE 182 (591)
T ss_dssp HHHHHHHHHSCHHHHHHCCCGGGEECHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHSEEEETTEEEEBSCCBCC
T ss_pred HHHHHHHHHhhhcCCcccCchhhCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccC
Confidence 99999999995 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceeeeCCCCcEEEEEecCCCCcceeeeeccCCch
Q 002260 539 PPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618 (946)
Q Consensus 539 PPGLfRGRG~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~hD~~vhwlAtg~DaigRkQYkYv~L~ahs~ 618 (946)
|||||||||+||+||+||+||+|+||||||+++++||+ |||||||++|+||++|+|||+|.|.++ +++.|+|++|+|.
T Consensus 183 PPgLFrGRG~HPk~G~lK~RV~pedvtiNi~k~a~iP~-pp~GhaWkdV~hd~tvtWia~w~~hIq-GRkQY~Yh~~~s~ 260 (591)
T 1a31_A 183 PPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS-PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSR 260 (591)
T ss_dssp CSEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCC-CSTTCCCSEEECCTTSCCSEEEECTTT-CCEEEECBCTTSH
T ss_pred CCccccCCCCCCCCCccccccChhhhhhhhccCCCCCc-CCCCCCcceeccCCceEEEEeChHHhc-CCeeEEEecCchH
Confidence 99999999999999999999999999999999999999 779999999999999999999999996 4456666888899
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhhccccCCcccccC-CCceeeccCCCCceEE
Q 002260 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVEC 697 (946)
Q Consensus 619 wk~~rD~~Kferar~L~~~Lp~IR~~y~kDLksk~~~~RqlAvAlyLIDklALRvGnEKy~~e-ndTvG~cTLR~eHVkl 697 (946)
|+++||+.||++|++|+.+||+||++|++||++++|.+||+||||||||.+|||||||+|+++ |+||||||||++||+|
T Consensus 261 wk~~rD~~Kfe~ar~l~~~Lp~IR~~~~~dL~s~~~r~rqlAval~LID~~alRvGnekya~e~ndTvGl~TLR~eHV~l 340 (591)
T 1a31_A 261 IKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINL 340 (591)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhhhcCCcccccccCCCeeeecccccceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cC-----CCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCCCCCCccCccCChhHHHHHHHhhCCCCccceecccch
Q 002260 698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 772 (946)
Q Consensus 698 ~~-----~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~Pgd~LFd~Ldss~LN~yLkelm~glTAKdFRTynA 772 (946)
++ +++|+|+|+|||||+|+++|.||++||++|+.|++++.||++||+.|++++||+||+++|+||||||||||||
T Consensus 341 ~~~~~g~~~~V~FdF~GKdgir~~~~V~vD~~v~k~L~~f~~~K~Pg~~LF~~l~s~~lN~yLkelmgglTAKdFRTwnA 420 (591)
T 1a31_A 341 HPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNA 420 (591)
T ss_dssp EEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTTTCCTTSBTTTTCCHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred eccccCCCCeEEEEEecCCceEEEEEEccCHHHHHHHHHHHhCCCCchHhhccCCHHHHHHHHHHHcCCCceeeeccCch
Confidence 95 3899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002260 773 SITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 851 (946)
Q Consensus 773 Svta~~~L~~~~~~~-s~~eK~~~yn~AnreVAilCNHQRaV~K~~~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~ 851 (946)
|+||+++|.+++..+ ++++++++||+|||+|||||||||+|||+|++||++|+++|+++++|+.+++.+|..++++++.
T Consensus 421 Svta~~~L~~~~~~~~s~~ek~~~yn~Anr~VAiLCNHqR~vpK~~~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~~~~~ 500 (591)
T 1a31_A 421 SITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKV 500 (591)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999998777 9999999999999999999999999999999999999999999999999999999998887754
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhccccccccceeeeccccccccCccceeeecccccCCchhhccHhHH
Q 002260 852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 931 (946)
Q Consensus 852 ~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~keenK~vaLGTSKiNYlDPRItvAwcKr~~VPIeKif~Ktlr 931 (946)
. .+ .+...++|+++++|+++++||++|++|++|||+||||||||||||||||||||||||||+||||||||||||
T Consensus 501 ~-~~----~~~~~~~e~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSKiNYlDPRItvawckk~~VPieKif~ktlr 575 (591)
T 1a31_A 501 M-KD----AKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQR 575 (591)
T ss_dssp --------------------------------------------------CTTTSCHHHHHHHHHHTTCCGGGTSCHHHH
T ss_pred c-cc----ccccccHHHHHHHHHHHHHHHHHHHhhhhhhhcCeeeecccchhhccCchhheeehhhcCCCHHHhccHHHH
Confidence 3 22 123347899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccC-CCCCCC
Q 002260 932 AKFAWAMDV-DPEFRF 946 (946)
Q Consensus 932 ~KF~WA~~~-~~d~~F 946 (946)
+||+|||+| ++||+|
T Consensus 576 ~KF~WA~~~~~~~~~F 591 (591)
T 1a31_A 576 EKFAWAIDMADEDYEF 591 (591)
T ss_dssp HHTHHHHHHCCTTCCC
T ss_pred HhhhhHHhCCCCCCcC
Confidence 999999997 999999
No 2
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=100.00 E-value=3.6e-160 Score=1315.80 Aligned_cols=426 Identities=53% Similarity=0.926 Sum_probs=407.6
Q ss_pred cccCccccCCCCCCCCccccceeeeccccCCCCCCCCcceEEEcCeeccCChhhHHHHHHHHHhcCCCCCChhhHHhhhH
Q 002260 384 SQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFW 463 (946)
Q Consensus 384 ~~~~~~~~~~~~~~~g~~KW~tLeHnGv~FpP~Y~P~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~k~~F~~NFf 463 (946)
.+||...+.+-..++| +||+|||||||+|||||+||||+|+|||+||+|||+|||||||||+||+|+|+++++||+|||
T Consensus 4 ~~ww~~~~~~~~~~~~-~kW~tL~HnG~~Fpp~y~p~~v~~~ydg~~v~l~~~~EEva~f~a~~l~~~~~~~~~F~~NFf 82 (432)
T 2b9s_A 4 LNWWEQENLRIAMKGE-RRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFF 82 (432)
T ss_dssp CCTTSCSSCCCCCTTS-CCCSCEECCCCBCCCCCCCCCCCEEETTEEECCCHHHHHHHHHHHTTTTSGGGGCHHHHHHHH
T ss_pred cccccccCcccccCCC-cceeEeeecccccCCCcCCCCceeeECCEeccCCHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 4677664433222344 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCCCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEEcCceeeecCcccCCCcc
Q 002260 464 NDWRKLL-GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGL 542 (946)
Q Consensus 464 ~D~r~~l-~~~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~vDG~kekVGNFrvEPPGL 542 (946)
+||+++| ++++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+|||++|||||||||||||
T Consensus 83 ~d~~~~l~~~~~~i~~~~~cdF~~i~~~~~~~~e~kk~~~~eek~~~k~~~~~~~~~y~~~~~Dg~~ekvgnf~~epPgl 162 (432)
T 2b9s_A 83 ESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGL 162 (432)
T ss_dssp HHHHHHHTTSCCCCCCGGGEECHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHGGGSEEEETTEEEEBSCCBCCCCEE
T ss_pred HHHHHHhccCCcccCchhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccCCCcc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceeeeCCCCcEEEEEecCCCCcceeeeeccCCchhhcc
Q 002260 543 FRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQ 622 (946)
Q Consensus 543 fRGRG~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~hD~~vhwlAtg~DaigRkQYkYv~L~ahs~wk~~ 622 (946)
|||||+|||||+||+||+|+||||||+++++||+ |||||+|++|+||++|+|||+|.|+++ ++++|||++|+|.|+++
T Consensus 163 frgRG~hpk~G~lK~RV~pedv~iNi~k~a~iP~-p~~ghaWkdV~hd~~vtWia~w~~~Iq-Gr~qYvy~~~~s~w~~~ 240 (432)
T 2b9s_A 163 FRGRGKHPLMGKLKVRVQPEDITINIGETAEVPV-PPAGHKWAAVQHDHTVTWLAMWRDSVA-GNMKYVMLAPSSSVKGQ 240 (432)
T ss_dssp CCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCC-CCTTCCCSEEECCTTCCCSEEEECTTT-CCEEEECBCTTSHHHHH
T ss_pred ccCCCCCCCCCccccccChhhhhhhhccCCCCCc-CCCCCCcceeccCCceEEEeeChHHhc-CCeeEEEecCcHHHHHH
Confidence 9999999999999999999999999999999999 789999999999999999999999997 56777779999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCe
Q 002260 623 SDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNK 702 (946)
Q Consensus 623 rD~~Kferar~L~~~Lp~IR~~y~kDLksk~~~~RqlAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~ 702 (946)
||+.||++|++|+.+||+||++|++||+++++.+||+||||||||.++||||||+|+++|+||||||||++||+|+++++
T Consensus 241 rd~~Kfer~~~f~~~Lp~IR~~~~~dL~~~~~r~rqlAvav~LiD~~alRvGnekYa~endTvGl~TLR~eHV~l~~~~~ 320 (432)
T 2b9s_A 241 SDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDNI 320 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECTTSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcccCCccccccCCCEeecccccccEEEcCCCe
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999995599
Q ss_pred EEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCCCCCCccCccCChhHHHHHHHhhCCCCccceecccchHHHHHHHHhc
Q 002260 703 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 782 (946)
Q Consensus 703 V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~Pgd~LFd~Ldss~LN~yLkelm~glTAKdFRTynASvta~~~L~~ 782 (946)
|+|+|+|||||+|+++|+||++||++|+.|++.+.||++||++|++++||+||+++|+|||||||||||||+||+++|.+
T Consensus 321 V~FdF~GKdgir~~~~V~vD~~l~k~L~~~~~~K~Pg~~LF~~l~s~~lN~yL~elmgg~TAKdFRTw~aSvta~~~L~~ 400 (432)
T 2b9s_A 321 VRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 400 (432)
T ss_dssp EEEEEECGGGCEEEEEEECCHHHHHHHHHHHTTCCTTSBTTTTCCHHHHHHHHTTTSTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCceEEEEEEecCHHHHHHHHHHHhCCCChhHhcccCCHHHHHHHHHHHhCCCceeeeccCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 002260 783 GT--GDGDVAVKIDVYQRANKEVAIICNHQRT 812 (946)
Q Consensus 783 ~~--~~~s~~eK~~~yn~AnreVAilCNHQRa 812 (946)
++ ..+++++|+.+||+|||+|||||||||+
T Consensus 401 ~~~~~~~t~~~K~~~yn~Anr~VAilCnHqr~ 432 (432)
T 2b9s_A 401 KPVDPKWSTADKLAYFNKANTEVAILCNHQKS 432 (432)
T ss_dssp CC----CCTTHHHHHHHHHHHHHHHHHTCEEC
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 87 4569999999999999999999999996
No 3
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=100.00 E-value=3.2e-99 Score=769.41 Aligned_cols=213 Identities=52% Similarity=0.989 Sum_probs=205.4
Q ss_pred cccceeeeccccCCCCCC--CCcceEEEcCeeccCChhhHHHHHHHHHhcCCCCCChhhHHhhhHHHHHHHhC------C
Q 002260 401 KKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG------K 472 (946)
Q Consensus 401 ~KW~tLeHnGv~FpP~Y~--P~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~k~~F~~NFf~D~r~~l~------~ 472 (946)
+||+|||||||+|||+|+ ||||+|+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|+ +
T Consensus 3 ~KW~tLeHnGv~FpP~YeplP~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~~~~F~kNFf~Df~~~l~~~~~~~~ 82 (223)
T 1ois_A 3 IKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLN 82 (223)
T ss_dssp CCCSCEECCCCBCCCCCCCCCTTCCEEETTEEECCCHHHHHHHHHHHHTTTSSGGGCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred cceeEeeecceecCCccccCCCCCceeECCEECcCCHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhhcccccc
Confidence 499999999999999999 89999999999999999999999999999999999999999999999999995 2
Q ss_pred CCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEEcCceeeecCcccCCCccccCCCCCCCC
Q 002260 473 NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 552 (946)
Q Consensus 473 ~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~vDG~kekVGNFrvEPPGLfRGRG~hPk~ 552 (946)
++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+|||++||||||||||||||||||+||||
T Consensus 83 ~~~I~~~~kcDFs~i~~~~~~~~e~kk~~skEEKk~~Keek~~~~~~y~~~~vDG~kekVGNFriEPPgLFrGRG~HPK~ 162 (223)
T 1ois_A 83 GIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKT 162 (223)
T ss_dssp CCCCCCGGGEECHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHEEEETTEEEEEECCBCCCCEECCCCTTCTTT
T ss_pred CcccCchhhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCEEEECCEEEeeCCcccCCCccccCCCCCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceeeeCCCCcEEEEEecCCCCcceeeeeccC
Q 002260 553 GKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615 (946)
Q Consensus 553 G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~hD~~vhwlAtg~DaigRkQYkYv~L~a 615 (946)
|+||+||+||||||||+++++||+ |||||+|++|+||++|||||+|+|+++ +||+||||+|
T Consensus 163 G~lK~RV~PeDVtIN~gkda~vP~-pp~Gh~WkeV~HDntvtWLA~W~enI~-~~~KYV~Laa 223 (223)
T 1ois_A 163 GKLKRRVNPEDIVLNLSKDAPVPP-APEGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAA 223 (223)
T ss_dssp TCEECCCCGGGCEEECCSSSCCCC-CSTTCCCSEEECCTTCCCSEEEECTTT-CCEEEEEECC
T ss_pred cccccccCHhHeEEecCCCCCCCc-cCCCCCcceeecCCCceEEEEeeeccC-CceeEEEecC
Confidence 999999999999999999999999 559999999999999999999999999 7999999986
No 4
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=100.00 E-value=1.6e-78 Score=655.56 Aligned_cols=263 Identities=19% Similarity=0.245 Sum_probs=227.4
Q ss_pred cCCCcccc---CC-CCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceee--eCCCCcEEEEEecCCCCcceee
Q 002260 537 VEPPGLFR---GR-GEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK--HDNTVTWLAFWNDPINPKEFKY 610 (946)
Q Consensus 537 vEPPGLfR---GR-G~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~--hD~~vhwlAtg~DaigRkQYkY 610 (946)
+..|||.| |+ ||+ +...-+++|.+.+ ++.+++.++||| ||+||| ++++||+||||+|++||+||+|
T Consensus 8 ~~~pgi~R~r~g~~gf~-Y~~~~G~~i~d~~-~~~Ri~~LaIPP------Aw~dVwI~p~~nghlQAtG~Da~GRkQYrY 79 (346)
T 3m4a_A 8 LAEEYLRREGHDPQKFR-YVHPDGTPYTDAD-GLARIARLAVPP------AYQDVYVSPDAENELQAFGRDAAGRLQYRY 79 (346)
T ss_dssp HC----CC--------------------------CHHHHHCCCT------TCEEEEECSSSSCSEEEEEECCC-CEEEEE
T ss_pred CCCCCcEEeecCCCCeE-EECCCCCEecCHH-HHHHHHhcCCCC------CcceEEEeeCCCCceEEEEecCCCCccccc
Confidence 46899999 99 999 4555577998766 789999999999 899999 9999999999999999999999
Q ss_pred eeccCCchhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHhhccccCCcccccCCCceeecc
Q 002260 611 VFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT-RRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689 (946)
Q Consensus 611 v~L~ahs~wk~~rD~~Kferar~L~~~Lp~IR~~y~kDLksk~~~-~RqlAvAlyLIDklALRvGnEKy~~endTvG~cT 689 (946)
||.|+++||..||++|++|+.+||+||++|.+||++++++ +||+|+|+||||.++||||||+|+++|+||||||
T Consensus 80 -----H~~w~~~rd~~Kfer~~~f~~~Lp~IR~~v~~dL~~~~~~r~rvlA~av~LlD~~~lRvGne~Ya~en~T~GltT 154 (346)
T 3m4a_A 80 -----HPDFVQAGALKKWQRLTRFAGALPTLKVATTADLRASGLPPRKVMALMTRLLHVARFRVGSDIYARQHKTYGLST 154 (346)
T ss_dssp -----CGGGC---CCCHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCGGG
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhcccCCChhhhhhcCCccccc
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCCCCCCccCccCCh----------hHHHHHHHhhC
Q 002260 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT----------AKLNAHLKELM 759 (946)
Q Consensus 690 LR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~Pgd~LFd~Lds----------s~LN~yLkelm 759 (946)
||++||+++ ++.|+|+|+|||||+|+++|+ |++||++|+.|++ .||++||+|+|+ ++||+||+++|
T Consensus 155 Lr~~HV~~~-~~~v~f~F~GK~gi~~~~~v~-D~~l~~~l~~~~~--~pg~~LF~~~d~~g~~~~~v~s~~vN~yL~e~~ 230 (346)
T 3m4a_A 155 LRQRHVVVD-GNTVTFRFKGKHGVSQHKATS-DRTLAANMQKLLD--LPGPWLFQTVDAGGGERRRIHSTELNAYLREVI 230 (346)
T ss_dssp CBGGGEEEE-TTEEEEEEECGGGCEEEEEEC-CHHHHHHHHHHHT--SCSSBSCEEECCCC-CEEECCHHHHHHHHHHHH
T ss_pred ccHhheeee-CCEEEEEEecCCCCEEEEEEC-cHHHHHHHHHHHh--CchhhhcceEcCCCCccccCCHHHHHHHHHHHc
Confidence 999999999 699999999999999999999 9999999999964 799999999875 78999999999
Q ss_pred CCCccceecccchHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 002260 760 PGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKT 816 (946)
Q Consensus 760 ~glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~AnreVAilCNHQRaV~K~ 816 (946)
+|||||||||||||++|+++|.+++...+..++.+.|+.||++||++||||+||||+
T Consensus 231 g~~TAKdFRTw~aSv~a~~~L~~~~~~~~~~~~kk~i~~a~k~VA~~LgNTpaV~R~ 287 (346)
T 3m4a_A 231 GPFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKFVADDLGNTPAVTRG 287 (346)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCCccchhh
Confidence 889999999999999999999998888899999999999999999999999999997
No 5
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=100.00 E-value=3.6e-76 Score=631.62 Aligned_cols=261 Identities=20% Similarity=0.257 Sum_probs=237.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceee--eC----CCCcEEEEEecCCCCcceeeeecc
Q 002260 541 GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK--HD----NTVTWLAFWNDPINPKEFKYVFLA 614 (946)
Q Consensus 541 GLfRGRG~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~--hD----~~vhwlAtg~DaigRkQYkYv~L~ 614 (946)
++|.-.|...+.+.++.||.|++++|+|++.++||| ||+||| ++ +++||||+|+|++||+||+|
T Consensus 3 ~~~~~~G~~~~d~~~~~rv~~~~~~~~ri~~l~IPP------Aw~dVwi~~~~~e~~~~~lqAtG~Da~GRkQY~Y---- 72 (314)
T 2h7g_X 3 ALFYKDGKLFTDNNFLNPVSDNNPAYEVLQHVKIPT------HLTDVVVYGQTWEEALTRLIFVGSDSKGRRQYFY---- 72 (314)
T ss_dssp EEEEETTEEESSTTSCSBCCTTCTHHHHHHHCCCCT------TCEEEEEESSCHHHHTTSEEEEEECTTCCEEEEE----
T ss_pred ceecCCCccccCccccccCCchhHHHHHHHhCCCCC------chheEEEecccccCCCCCeEEEeeccccCcceee----
Confidence 355566778899999999999999999999999999 899999 43 58899999999999999999
Q ss_pred CCchhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHh-hccccCCcccccCCCceeeccCCC
Q 002260 615 ASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGT-RRQIAVATYLIDK-LALRAGNEKDDDEADTVGCCTLKV 692 (946)
Q Consensus 615 ahs~wk~~rD~~Kferar~L~~~Lp~IR~~y~kDLksk~~~-~RqlAvAlyLIDk-lALRvGnEKy~~endTvG~cTLR~ 692 (946)
||.|+++||+.||+++++|+++||+||++|++||+.+++. .+|+| +++|||. ++||||||+|+++|+||||||||+
T Consensus 73 -h~~w~~~rd~~Kfe~~~~~~~~Lp~IR~~v~~dL~~~~~~r~~~aa-v~~lld~~~alRvGnekya~en~T~GltTLr~ 150 (314)
T 2h7g_X 73 -GKMHVQNRNAKRDRIFVRVYNVMKRINSFINKNIKKSSTDSNYQLA-VFMLMETMFFIRFGKMKYLKENETVGLLTLKN 150 (314)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHH-HHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBG
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHH-HHHHHHhcCceecCChhhhhhcCCEeeeccch
Confidence 9999999999999999999999999999999999777777 67755 5555555 899999999999999999999999
Q ss_pred CceEEcCCCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCCCCCCccCccCChhHHHHHHHhhCCCCccceecccch
Q 002260 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 772 (946)
Q Consensus 693 eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~Pgd~LFd~Ldss~LN~yLkelm~glTAKdFRTynA 772 (946)
|||+++ +++|+|+|+|||||+|+++|++|++||++|+.|++++.||++||+++|+++||+||+++ ||||||||||||
T Consensus 151 eHV~l~-~~~v~fdF~GKdgi~~~~~v~dd~~l~k~l~~~~~~k~pg~~LF~~ld~~~vN~yL~e~--~~TAKdFRTw~a 227 (314)
T 2h7g_X 151 KHIEIS-PDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYESIKQF--GIRIKDLRTYGV 227 (314)
T ss_dssp GGEEEE-TTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCCTTCTTSBSSTTCCHHHHHHHHGGG--TSCHHHHHHHHH
T ss_pred hheEEE-CCEEEEEEeCCCCcEEEEEEeccHHHHHHHHHHHhCCCChHHhhcccChHHHHHHHHHC--CCeeeeecCcch
Confidence 999999 59999999999999999999977999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHh-cCCC-CCCHHHHHHHHHHHHHHHHHHcCCCcccccch
Q 002260 773 SITLDGMLN-KGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTH 817 (946)
Q Consensus 773 Svta~~~L~-~~~~-~~s~~eK~~~yn~AnreVAilCNHQRaV~K~~ 817 (946)
|+||+++|. ++.. ..+..+|+..|+.++ +||++|||||||||+|
T Consensus 228 Sv~a~~~L~~~l~~~~~~~~~K~~i~~~~~-~VA~~lgnTpaV~R~~ 273 (314)
T 2h7g_X 228 NYTFLYNFWTNVKSISPLPSPKKLIALTIK-QTAEVVGHTPSISKRA 273 (314)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHHHH-HHHHHHTCCTTTHHHH
T ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHHH-HHHHHhCCCCCCCccc
Confidence 999999994 2221 225577888888888 9999999999999984
No 6
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=100.00 E-value=9.3e-36 Score=250.86 Aligned_cols=62 Identities=52% Similarity=0.972 Sum_probs=51.6
Q ss_pred hhccccccccceeeeccccccccCccceeeecccccCCchhhccHhHHhhccccccCCCCCCC
Q 002260 884 ERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946 (946)
Q Consensus 884 ~~~~~~keenK~vaLGTSKiNYlDPRItvAwcKr~~VPIeKif~Ktlr~KF~WA~~~~~d~~F 946 (946)
|.++++||+||+|||||||||||||||||||||||+|||||||+||||+||+|||++ +||+|
T Consensus 1 ~~~~~~k~~~K~vaLgTSKiNYlDPRItvaWcKr~~VPieKif~ktlr~KF~WA~~~-~~~~F 62 (62)
T 2b9s_B 1 ENIIRIKDDNKAVSLGTSKINYIDPRIICSWAKAQDVPINKIFSATIQKKFPWAMNA-ENFDF 62 (62)
T ss_dssp ----------CEECCHHHHHHTSCHHHHHHHHHHTTCCGGGTSCHHHHHHCTTTTTC-CSCCC
T ss_pred CchhhhhhhCeeEecccchhhccCchhhhhhhhhcCCCHHHHhhHHHHHhhhhhhcC-CCccC
Confidence 457899999999999999999999999999999999999999999999999999999 99998
No 7
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=97.37 E-value=4.6e-05 Score=66.79 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceee------eCCCCcEEEEEecCCCCcceeeeecc
Q 002260 551 KMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK------HDNTVTWLAFWNDPINPKEFKYVFLA 614 (946)
Q Consensus 551 k~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~------hD~~vhwlAtg~DaigRkQYkYv~L~ 614 (946)
..-.++++|..++.+++|.+..+||+ ..+||. ......++.+|.|+.||+||.|..++
T Consensus 13 ~D~~~t~~V~~~Np~yeil~~~kiP~------hL~dV~vyeqt~eea~~~lIfvG~DSKgrkQYFYGk~h 76 (77)
T 1vcc_A 13 TDNNFLNPVSDDNPAYEVLQHVKIPT------HLTDVVVYEQTWEEALTRLIFVGSDSKGRRQYFYGKMH 76 (77)
T ss_dssp SSTTSCSBCCTTCTHHHHHHHCCCCT------TCEEEEEECCCHHHHTTSEEEEEECTTSCEEEEECTTC
T ss_pred echhhccccCCCChHHHHHHhccCCc------ccceEEEeeecHHHhhCceEEEeecCCCceeeeecccc
Confidence 34456899999999999999999999 699998 56678899999999999999996653
No 8
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=95.31 E-value=0.046 Score=54.62 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcC-CC
Q 002260 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KK 737 (946)
Q Consensus 659 lAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~-K~ 737 (946)
..+++.|+-.+.+|+|. +|.|+.++|.+. ++.|.+. .+|.+..+ .|.+.+.+...|..++.. ..
T Consensus 122 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~-~~~i~i~-~~K~~~~r--~vpl~~~~~~~l~~~~~~~~~ 186 (292)
T 4a8e_A 122 DRLILLLLYGAGLRVSE-----------LCNLRVEDVNFE-YGVIVVR-GGKGGKDR--VVPISESLLSEIKRYLESRND 186 (292)
T ss_dssp HHHHHHHHHHSCCCHHH-----------HHHCBGGGEETT-TTEEEEC-CCSSSCCE--EEECCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCCCHHH-----------HHhCcHHhhhcc-CCEEEEE-ecCCCcee--EEEcCHHHHHHHHHHHHHhCc
Confidence 35566777789999985 899999999988 4776664 46776554 566779999999998765 45
Q ss_pred CCCccC--------ccCChhHHHHHHHhhC--CC--CccceecccchHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 002260 738 QNDDLF--------DKLDTAKLNAHLKELM--PG--LTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAI 805 (946)
Q Consensus 738 Pgd~LF--------d~Ldss~LN~yLkelm--~g--lTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~AnreVAi 805 (946)
+++.|| ..++...++.+++.+. .| +|..+||-..||.++.. + .+ ...|+.
T Consensus 187 ~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~H~lRht~at~l~~~-----g--~~-----------~~~i~~ 248 (292)
T 4a8e_A 187 DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLER-----G--ID-----------IRIIQE 248 (292)
T ss_dssp CCSBSCEECCSSCSEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT-----T--CC-----------HHHHHH
T ss_pred CCCcEEeecCCCCCCCCCHHHHHHHHHHHHHHcCCCcCcccchhHHHHHHHHc-----C--CC-----------HHHHHH
Confidence 777889 6778899999999987 34 78888886666654432 1 12 347889
Q ss_pred HcCCCc
Q 002260 806 ICNHQR 811 (946)
Q Consensus 806 lCNHQR 811 (946)
++||..
T Consensus 249 ~lGH~~ 254 (292)
T 4a8e_A 249 LLGHSN 254 (292)
T ss_dssp HHCC--
T ss_pred HcCCCC
Confidence 999974
No 9
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=95.30 E-value=0.036 Score=52.05 Aligned_cols=116 Identities=12% Similarity=0.209 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeCh-------hHHHHHHh
Q 002260 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEL-------PVYKAIGQ 731 (946)
Q Consensus 659 lAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~-------~V~knLk~ 731 (946)
..+++.|+-.+.+|+|- +|.|+.++|. ++.|.+. .+|.+..+ .|.+.+ .+...|..
T Consensus 23 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~---~~~i~i~-~~K~~~~r--~vpl~~~~~~l~~~l~~~l~~ 85 (179)
T 1ae9_A 23 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV---DGYLYVE-QSKTGVKI--AIPTALHIDALGISMKETLDK 85 (179)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HHHCBGGGEE---TTEEEEE-CTTTCCEE--EEETTCEEGGGTEEHHHHHHH
T ss_pred HHHHHHHHHHhCchHHH-----------HhcCcHHHee---CCeEEEE-EcCCCcee--eeeCcHHHHHHHHHHHHHHHH
Confidence 45667777778999985 8999999997 3676663 47887754 455555 45666666
Q ss_pred hhcCCCCCCccCc-----cCChhHHHHHHHhhC-----C----CCccceecccchHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002260 732 FQTGKKQNDDLFD-----KLDTAKLNAHLKELM-----P----GLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQ 797 (946)
Q Consensus 732 f~k~K~Pgd~LFd-----~Ldss~LN~yLkelm-----~----glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn 797 (946)
+.. ..+++.||. .++...++..++.++ + ++|..+|||| ||.++.... +
T Consensus 86 ~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~lR~~-at~l~~~g~-------~--------- 147 (179)
T 1ae9_A 86 CKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQI-------S--------- 147 (179)
T ss_dssp HHH-HTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHH-HHHHHHHHT-------C---------
T ss_pred hcc-cCCCCeEEEcCCCCcCChhHHHHHHHHHHHHcCCCCCCCCCCcchHHHH-HHHHHHcCC-------C---------
Confidence 532 245778885 477888888888874 3 6899999986 665544321 1
Q ss_pred HHHHHHHHHcCCCc
Q 002260 798 RANKEVAIICNHQR 811 (946)
Q Consensus 798 ~AnreVAilCNHQR 811 (946)
...|+.++||.-
T Consensus 148 --~~~i~~~lGH~~ 159 (179)
T 1ae9_A 148 --DKFAQHLLGHKS 159 (179)
T ss_dssp --HHHHHHHHTC--
T ss_pred --HHHHHHHHCcCC
Confidence 246888899964
No 10
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=94.94 E-value=0.032 Score=56.21 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=83.5
Q ss_pred HHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEE----EEEEeeChhHHHHHHhhhcC
Q 002260 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQY----VNTVEVELPVYKAIGQFQTG 735 (946)
Q Consensus 660 AvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~----~~tV~VD~~V~knLk~f~k~ 735 (946)
.+++.|+-.+.||+|- +|.|+.+||.+..++.|.+.. |.+... ...|.+.+.+...|..++..
T Consensus 142 ~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~~~~~i~i~~--k~~K~~~~~~~r~vpl~~~~~~~L~~~~~~ 208 (324)
T 1xo0_A 142 LAFLGIAYNTLLKIAE-----------IARIRVKDISRTDGGRMLIHI--GRTKTLVSTAGVEKALSLGVTKLVERWISV 208 (324)
T ss_dssp HHHHHHHHHHCCCHHH-----------HHHCBGGGEEEEETTEEEEEE--CCCCSSSSCSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHH-----------HHhccHHHeeeccCCeEEEEe--ecCCcCcCCCceEEecCccHHHHHHHHHHh
Confidence 3445566678999985 899999999998337777653 333221 14677789999999888653
Q ss_pred ----CCCCCccCc--------------cCChhHHHHHHHhhC-----C---------CCccceecccchHHHHHHHHhcC
Q 002260 736 ----KKQNDDLFD--------------KLDTAKLNAHLKELM-----P---------GLTAKVFRTYNASITLDGMLNKG 783 (946)
Q Consensus 736 ----K~Pgd~LFd--------------~Ldss~LN~yLkelm-----~---------glTAKdFRTynASvta~~~L~~~ 783 (946)
..+++.||- .++...++..++.++ + .+|..+||-..||.++..
T Consensus 209 ~~~~~~~~~~lF~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~H~lRht~at~l~~~----- 283 (324)
T 1xo0_A 209 SGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARA----- 283 (324)
T ss_dssp HCGGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHHT-----
T ss_pred cCCccCCCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccccccccccccchhhHHHHHHHHHC-----
Confidence 246677983 577888998888875 2 578888887666655432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCc
Q 002260 784 TGDGDVAVKIDVYQRANKEVAIICNHQR 811 (946)
Q Consensus 784 ~~~~s~~eK~~~yn~AnreVAilCNHQR 811 (946)
+ .+ ...|+.++||.-
T Consensus 284 g--~~-----------~~~i~~~lGH~s 298 (324)
T 1xo0_A 284 G--VS-----------IPEIMQAGGWTN 298 (324)
T ss_dssp T--CC-----------HHHHHHHHTCSS
T ss_pred C--CC-----------HHHHHHHcCCCC
Confidence 1 12 247888999963
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=94.77 E-value=0.05 Score=56.40 Aligned_cols=118 Identities=11% Similarity=0.187 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEe-----eChhHHHHHHhhh
Q 002260 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE-----VELPVYKAIGQFQ 733 (946)
Q Consensus 659 lAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~-----VD~~V~knLk~f~ 733 (946)
...++.|+=.+.+|+|- +|.|+.++|. ++.|.+. .+|.+..+..-+. +.+.+...|+.+.
T Consensus 199 ~~~~~~l~~~tG~R~~E-----------~~~L~~~did---~~~i~i~-~~K~~~~r~vpl~~~~~~l~~~l~~~l~~~~ 263 (356)
T 1z1b_A 199 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV---DGYLYVE-QSKTGVKIAIPTALHIDALGISMKETLDKCK 263 (356)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HTTCBGGGEE---TTEEEEE-CTTTCCEEEEETTCEETTTTEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHH-----------HhcCcHHHcc---CCeEEEE-ecCCCCceecccchhhhhhhHHHHHHHHHHH
Confidence 44566777788999985 8999999995 4666664 4788765443332 1245677777764
Q ss_pred cCCCCCCccCc-----cCChhHHHHHHHhhC---------CCCccceecccchHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002260 734 TGKKQNDDLFD-----KLDTAKLNAHLKELM---------PGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799 (946)
Q Consensus 734 k~K~Pgd~LFd-----~Ldss~LN~yLkelm---------~glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~A 799 (946)
. ..+++.||. .++...++.+++.++ +.+|..+|||+ ||.++.... -
T Consensus 264 ~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~H~lR~~-at~l~~~g~------------------~ 323 (356)
T 1z1b_A 264 E-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQI------------------S 323 (356)
T ss_dssp H-HTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHH-HHHHHHHHT------------------C
T ss_pred h-cCCCCceeeCCCCCcCChhHHHHHHHHHHHhcCCCcCCCCCChhhHHHH-HHHHHHcCC------------------C
Confidence 2 245677885 577888999888874 25799999986 665443321 1
Q ss_pred HHHHHHHcCCCc
Q 002260 800 NKEVAIICNHQR 811 (946)
Q Consensus 800 nreVAilCNHQR 811 (946)
...|+.++||..
T Consensus 324 ~~~i~~~lGH~~ 335 (356)
T 1z1b_A 324 DKFAQHLLGHKS 335 (356)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHhCCCc
Confidence 346888899963
No 12
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=94.38 E-value=0.08 Score=52.48 Aligned_cols=117 Identities=12% Similarity=0.198 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChh-------HHHHHHh
Q 002260 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-------VYKAIGQ 731 (946)
Q Consensus 659 lAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~-------V~knLk~ 731 (946)
..+++.|+=.+.+|+|- +|.|+.++|. ++.|.+. .+|.+..+. |.+.+. +...|..
T Consensus 126 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~---~~~i~i~-~~K~~~~r~--vpl~~~~~~l~~~l~~~l~~ 188 (283)
T 1z19_A 126 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV---DGYLYVE-QSKTGVKIA--IPTALHIDALGISMKETLDK 188 (283)
T ss_dssp HHHHHHHHHHSCCCHHH-----------HTTCBGGGEE---TTEEEEE-CTTTCCEEE--EETTCEETTTTEEHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHH-----------HhcCCHHHhc---CCeEEEe-ecCCCCcee--eecChhhhhhhHHHHHHHHH
Confidence 34566677788999985 8999999996 4666664 588877654 555543 4555665
Q ss_pred hhcCCCCCCccCc-----cCChhHHHHHHHhhC---------CCCccceecccchHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002260 732 FQTGKKQNDDLFD-----KLDTAKLNAHLKELM---------PGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQ 797 (946)
Q Consensus 732 f~k~K~Pgd~LFd-----~Ldss~LN~yLkelm---------~glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn 797 (946)
+.. ..+++.||- .++...++.+++.++ +.+|..+|||| ||.++.... +
T Consensus 189 ~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~H~lR~~-at~l~~~g~-------~--------- 250 (283)
T 1z19_A 189 CKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQI-------S--------- 250 (283)
T ss_dssp HHH-HHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHH-HHHHHHHHT-------C---------
T ss_pred HHH-hCCCCceEeCCCCCcCChhhHHHHHHHHHHHcCCCccCCCCCcchHHHH-HHHHHHcCC-------C---------
Confidence 532 235677885 577888999988875 25789999987 665433211 1
Q ss_pred HHHHHHHHHcCCCcc
Q 002260 798 RANKEVAIICNHQRT 812 (946)
Q Consensus 798 ~AnreVAilCNHQRa 812 (946)
...|+.++||...
T Consensus 251 --~~~i~~~lGH~~~ 263 (283)
T 1z19_A 251 --DKFAQHLLGHKSD 263 (283)
T ss_dssp --HHHHHHHHTCSSS
T ss_pred --HHHHHHHhCcCcH
Confidence 2358889999753
No 13
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=94.37 E-value=0.13 Score=50.70 Aligned_cols=121 Identities=13% Similarity=0.161 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEee----------------CCCCeEEEEEEeeC
Q 002260 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFL----------------GKDSIQYVNTVEVE 722 (946)
Q Consensus 659 lAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFl----------------GKdgir~~~tV~VD 722 (946)
..+++.|+-.+.||+|- +|.|+.++|.+. ++.|.+.-. .|.+ .-...|.+.
T Consensus 57 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~Kt~-~~~r~vpl~ 123 (244)
T 3nkh_A 57 VALMTEFQALNGMRIGE-----------MLAIQNEDIDFD-NKSLNINGTIHWFHDESGGFGVKDTTKTE-SSYRTIGLS 123 (244)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HHTCBGGGEETT-TTEEEECCEEEEEECTTSCEEEEECC----CCCEEEECC
T ss_pred HHHHHHHHHHhCchHHH-----------HhcCcHHHcCcc-CCeEEEeeEeeeccCCCccccccCCCCCC-CCceeEecC
Confidence 45666777788999985 899999999988 577766532 0110 014567888
Q ss_pred hhHHHHHHhhhcCC----------CCCCccCc-----cCChhHHHHHHHhhC-----C-CCccceecccchHHHHHHHHh
Q 002260 723 LPVYKAIGQFQTGK----------KQNDDLFD-----KLDTAKLNAHLKELM-----P-GLTAKVFRTYNASITLDGMLN 781 (946)
Q Consensus 723 ~~V~knLk~f~k~K----------~Pgd~LFd-----~Ldss~LN~yLkelm-----~-glTAKdFRTynASvta~~~L~ 781 (946)
+.+...|..++... .+++.||- .++...++.+++.++ + ++|..+||-..||.++.
T Consensus 124 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~H~lRht~at~l~~---- 199 (244)
T 3nkh_A 124 SRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQ---- 199 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCSHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCeEEECCCCCCCchhhHHHHHHHHHHHcCCCCCceeecchHHHHHHHHH----
Confidence 99999999886432 56788996 578889999999885 2 67788888666664443
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 002260 782 KGTGDGDVAVKIDVYQRANKEVAIICNHQ 810 (946)
Q Consensus 782 ~~~~~~s~~eK~~~yn~AnreVAilCNHQ 810 (946)
.+ .+ ...|+.++||.
T Consensus 200 -~g--~~-----------~~~i~~~lGH~ 214 (244)
T 3nkh_A 200 -QG--VS-----------LKAIMDRVGHS 214 (244)
T ss_dssp -TT--CC-----------HHHHHHHHCST
T ss_pred -cC--CC-----------HHHHHHHhCCC
Confidence 21 12 34688999997
No 14
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=94.23 E-value=0.089 Score=52.21 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCC--
Q 002260 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK-- 736 (946)
Q Consensus 659 lAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K-- 736 (946)
..+++.|+-.+.||+|- +|.|+.++|.+. ++.|.+. ||.+.. ..|.+.+.+...|..++...
T Consensus 133 ~~~~~~l~~~tGlR~~E-----------i~~L~~~di~~~-~~~i~i~--~K~~~~--r~vpl~~~~~~~l~~~~~~~~~ 196 (290)
T 1a0p_A 133 DKAMLEVLYATGLRVSE-----------LVGLTMSDISLR-QGVVRVI--GKGNKE--RLVPLGEEAVYWLETYLEHGRP 196 (290)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HTTCBGGGEETT-TTEEEEE--CSSSCE--EEEECCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCCCHHH-----------HHcCCHHHcCcc-cCeEEEe--ccCCCc--eEEECCHHHHHHHHHHHHhccc
Confidence 34456666678999985 889999999988 5777665 888765 45666799999999886542
Q ss_pred -----CCCCccCc-----cCChhHHHHHHHhhC-----C--CCccceecccchHHHHH
Q 002260 737 -----KQNDDLFD-----KLDTAKLNAHLKELM-----P--GLTAKVFRTYNASITLD 777 (946)
Q Consensus 737 -----~Pgd~LFd-----~Ldss~LN~yLkelm-----~--glTAKdFRTynASvta~ 777 (946)
.+++.||- .++...++.+++.++ + ++|..+||-..||.++.
T Consensus 197 ~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~h~lRht~at~l~~ 254 (290)
T 1a0p_A 197 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLN 254 (290)
T ss_dssp HHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCceeeCCCCCCCCHHHHHHHHHHHHHHcCCCcCCCCchhhhhHHHHHHHH
Confidence 56788996 477888999988875 2 37888888766665554
No 15
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=92.06 E-value=0.27 Score=46.15 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCC
Q 002260 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736 (946)
Q Consensus 657 RqlAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K 736 (946)
+..++++.|+-.+.+|+|. +|.|+.++|. .+.|.+. .+|.+. ...|.+.+.+...|..+
T Consensus 25 ~~~~~~~~l~~~tG~R~~E-----------~~~L~~~di~---~~~i~~~-~~K~~~--~r~vpl~~~~~~~l~~~---- 83 (170)
T 1aih_A 25 PDLGLIVRICLATGARWSE-----------AETLTQSQVM---PYKITFT-NTKSKK--NRTVPISDELFDMLPKK---- 83 (170)
T ss_dssp TTHHHHHHHHHHHCCCHHH-----------HHTCBTTTEE---TTEEEEE-SSSSSC--EEEEECCHHHHHHSCCC----
T ss_pred hhHHHHHHHHHHhCCcHHH-----------HHhCCHHHcC---CCeEEee-cccCCC--cceeeCCHHHHHHHHHH----
Confidence 4566777888889999985 8899999994 4666653 578776 45677788888888776
Q ss_pred CCCCccCccCChhHHHHHHHhhC-C---CCccceecccchHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHcCCCc
Q 002260 737 KQNDDLFDKLDTAKLNAHLKELM-P---GLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811 (946)
Q Consensus 737 ~Pgd~LFd~Ldss~LN~yLkelm-~---glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~AnreVAilCNHQR 811 (946)
.+.||.. ....++.+++.+- . ++|..+||-..||.++.. + .+ ...|+.++||..
T Consensus 84 --~~~lF~~-~~~~~~~~~~~~g~~~~~~~~~H~lRht~at~l~~~-----g--~~-----------~~~i~~~lGH~~ 141 (170)
T 1aih_A 84 --RGRLFND-AYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMN-----G--GN-----------ILVLKEILGHST 141 (170)
T ss_dssp --SSBSSCC-CHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHT-----T--CC-----------HHHHHHHHTCSS
T ss_pred --hhhccCc-cHHHHHHHHHHhccCCCCCCcchHhHHHHHHHHHHc-----C--CC-----------HHHHHHHhCCCC
Confidence 3578876 4577888888875 2 788888987766654432 1 12 257888999963
No 16
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=89.59 E-value=0.43 Score=48.98 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=80.0
Q ss_pred HHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcC-----
Q 002260 661 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG----- 735 (946)
Q Consensus 661 vAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~----- 735 (946)
+++.|+-.+.||+|- +|.|+.++|.+. .+.|.+. .||.+.. ..|.+.+.+...|+..++.
T Consensus 124 ~~~~l~~~tGlR~~E-----------l~~L~~~did~~-~~~i~i~-~~K~~k~--R~vpl~~~~~~~L~~~~~~~~~~~ 188 (320)
T 2a3v_A 124 LPIKLLYGSGLRLME-----------CMRLRVQDIDFD-YGAIRIW-QGKGGKN--RTVTLAKELYPHLKEQIALAKRYY 188 (320)
T ss_dssp HHHHHHHHSCCCHHH-----------HHTCBGGGEETT-TTEEEEE-EETTTEE--EEEECCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHH-----------HHcCcHHHCCCC-CCeEEEe-cCCCCCc--eeeeCCHHHHHHHHHHHHHhhhhh
Confidence 455666678999986 899999999998 5777764 3787754 4566778888888765320
Q ss_pred -------C-----CC---------------CCccCcc----------------CChhHHHHHHHhhC------CCCccce
Q 002260 736 -------K-----KQ---------------NDDLFDK----------------LDTAKLNAHLKELM------PGLTAKV 766 (946)
Q Consensus 736 -------K-----~P---------------gd~LFd~----------------Ldss~LN~yLkelm------~glTAKd 766 (946)
. .| .+.||.. ++...+|.+++.++ ..+|..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~agi~~~~~~H~ 268 (320)
T 2a3v_A 189 DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHT 268 (320)
T ss_dssp HHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTEEECCBCCHHHHHHHHHHHHHTTCCCSCCCHHH
T ss_pred cccccccccccccccchhhcccccccccccccceeeccccccCcccCccccccCCHHHHHHHHHHHHHHcCCCCCCCcCc
Confidence 0 01 1457752 66778999998875 2467788
Q ss_pred ecccchHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHcCCCc
Q 002260 767 FRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811 (946)
Q Consensus 767 FRTynASvta~~~L~~~~~~~s~~eK~~~yn~AnreVAilCNHQR 811 (946)
||--.||.++.. + .+ ...|+.++||.-
T Consensus 269 lRHT~At~l~~~-----G--~~-----------~~~v~~~LGH~s 295 (320)
T 2a3v_A 269 LRHSFATHLLEV-----G--AD-----------IRTVQEQLGHTD 295 (320)
T ss_dssp HHHHHHHHHHHT-----T--CC-----------HHHHHHHHTCSS
T ss_pred chHHHHHHHHHC-----C--CC-----------HHHHHHHhCCCC
Confidence 887666655432 1 12 346888889964
No 17
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=43.13 E-value=40 Score=29.98 Aligned_cols=58 Identities=14% Similarity=0.325 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHH----hhccccccccceeee
Q 002260 826 EKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKM----ERDMKTKEDLKTVAL 898 (946)
Q Consensus 826 ~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~----~~~~~~keenK~vaL 898 (946)
..+++|+.+|.|++.=|..++... -.+.|...|.+++..|..+ +.....-++.+..|+
T Consensus 3 ~~~eeL~~DLeEl~~Ll~~AkR~r---------------Vk~~L~~ei~~lE~ei~~~~~~~~~~~~~~~~~~~~~~ 64 (77)
T 1ysm_A 3 SVLEELQKDLEEVKVLLEKSTRKR---------------LRDTLTSEKSKIETELKNKMQQKSQKKPELDNEKPAAV 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTT---------------HHHHHHHHHHHHHHHHHHHHHSSTTCCCC---------
T ss_pred hHHHHHHHHHHHHHHHHHHcccHH---------------HHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccCCccc
Confidence 347888888888877776664211 1367778888888888876 444444455555555
No 18
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.93 E-value=22 Score=33.45 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhcccc
Q 002260 818 SAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKT 889 (946)
Q Consensus 818 ~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~ 889 (946)
-..|++|++.|...+.||-.+++.|+.+.+.-. .+.|.--+ .+.++...-+..++.+|..++.++-+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E---~DPDevNK--~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVE---VDPDDVNK--STLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998887653321 11111001 13455556666677777777666654
No 19
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.71 E-value=11 Score=34.23 Aligned_cols=56 Identities=14% Similarity=-0.000 Sum_probs=39.4
Q ss_pred hHHHHHHHhCCCCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEE
Q 002260 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAI 524 (946)
Q Consensus 462 Ff~D~r~~l~~~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~ 524 (946)
|..++|..+... .+.|++|-.-+..--|.-++||.+||+.=.++.+++.+.|+--+
T Consensus 21 F~~e~R~~ik~e-------~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 21 FVQEKIPELRRR-------GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp HHHTTHHHHHHH-------TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 555666555322 46777776665445788999999999988777777778876543
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.19 E-value=61 Score=31.40 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhcc
Q 002260 818 SAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM 887 (946)
Q Consensus 818 ~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~ 887 (946)
+++++.+...|..|+.++..++..++.+++ ..+.+++++..++.++.+|+..+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~-----------------e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAK-----------------EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444431 13666777777777777776544
No 21
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.22 E-value=1.2e+02 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002260 867 EALERKMAQTNAKIEKMER 885 (946)
Q Consensus 867 e~~~k~i~~~~~~i~k~~~ 885 (946)
+.++++|++++.+|..|+.
T Consensus 61 ~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 61 ERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5667777888888877765
No 22
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=28.65 E-value=17 Score=27.26 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=9.0
Q ss_pred CCCccccCCC
Q 002260 538 EPPGLFRGRG 547 (946)
Q Consensus 538 EPPGLfRGRG 547 (946)
.|+|+||+||
T Consensus 21 ~p~gff~~~~ 30 (30)
T 3gs2_B 21 AAEGFFRDRS 30 (30)
T ss_dssp CSTTTSCCCC
T ss_pred CCccccccCC
Confidence 5999999997
No 23
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.33 E-value=2.4e+02 Score=27.10 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=7.6
Q ss_pred chHHHHHHHHh
Q 002260 771 NASITLDGMLN 781 (946)
Q Consensus 771 nASvta~~~L~ 781 (946)
|.|.+|+.+|.
T Consensus 25 N~T~lLq~qLT 35 (121)
T 3mq7_A 25 NVTHLLQQELT 35 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 56677777774
No 24
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.68 E-value=1.2e+02 Score=28.63 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002260 818 SAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDL 893 (946)
Q Consensus 818 ~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~keen 893 (946)
-=|+.-|.++++++.+.+..+++++....+ ..|.++..+..+..++..++-++..+|++
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~r-----------------e~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNK-----------------EFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888877777777654321 14777888888999999998888888875
No 25
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=26.43 E-value=1.8e+02 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHh
Q 002260 862 RNLAPEALERKMAQTNAKIEKME 884 (946)
Q Consensus 862 ~~~~~e~~~k~i~~~~~~i~k~~ 884 (946)
..+|+|+.++-.+..++|+..+.
T Consensus 117 ~vLTPEQk~ql~e~~~~r~~~~~ 139 (145)
T 3itf_A 117 RLLTPEQQAVLNEKHQQRMEQLR 139 (145)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999998886
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.38 E-value=1.3e+02 Score=29.18 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhccccc
Q 002260 820 QMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTK 890 (946)
Q Consensus 820 ~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~k 890 (946)
..+.|...|+++...+..|+.+|..+. ...|.+++.++.+.+++..++.++..-
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~-----------------~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQ-----------------IKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666766665543 124788888899999998888776543
No 27
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.56 E-value=41 Score=30.21 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhcccc
Q 002260 817 HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKT 889 (946)
Q Consensus 817 ~~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~ 889 (946)
|-..|++|++.|...+.||-.+.+.|+.+.+.-. .+.|.--+ .+.++...-+..++.+|..++.++-+
T Consensus 3 ~M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e---~DPDevNK--~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDAERAVE---LDPDDVNK--STLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999988886653221 11111001 13455555666666677666666654
No 28
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.90 E-value=1.9e+02 Score=23.46 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhcc
Q 002260 817 HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM 887 (946)
Q Consensus 817 ~~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~ 887 (946)
|..+..+++..+...+......+..+..++. ...+....|..+.+.|.+++.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----------------~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKE-----------------KINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666666666655441 12445566777777777776554
No 29
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.80 E-value=2.1e+02 Score=25.69 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002260 819 AQMSRLTEKIEDLKGVLKDLRVDLDRAK 846 (946)
Q Consensus 819 ~~m~kl~~ki~~lk~~~~~~~~~l~~~k 846 (946)
++++.+..+|..++.++.++..-++.+.
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655444443
No 30
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.70 E-value=2e+02 Score=26.83 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCcc---ccc---ccCC---CHHHHHHHHHHHHHHHHHHhhcc
Q 002260 819 AQMSRLTEKIEDLKGVLKDLRVDLDRAK--KGKPPLMKDSD---GKR---KRNL---APEALERKMAQTNAKIEKMERDM 887 (946)
Q Consensus 819 ~~m~kl~~ki~~lk~~~~~~~~~l~~~k--~~~~~~~~~~~---~~~---~~~~---~~e~~~k~i~~~~~~i~k~~~~~ 887 (946)
.++.++..+|+.|+.....|+++.+.+. -+...+..+.+ .+. ..|+ ..++.+..+++|.+.+++|...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999988888777776554321 11100100111 111 1222 22456677777777777777666
Q ss_pred ccccccc
Q 002260 888 KTKEDLK 894 (946)
Q Consensus 888 ~~keenK 894 (946)
..-+++.
T Consensus 92 ~~lEeg~ 98 (100)
T 1go4_E 92 RAMERGG 98 (100)
T ss_dssp TTCC---
T ss_pred HHHhccC
Confidence 6555543
Done!