Query 002261
Match_columns 946
No_of_seqs 385 out of 2040
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 7E-119 1E-123 1039.0 47.3 820 16-912 1-853 (913)
2 KOG0243 Kinesin-like protein [ 100.0 2.8E-88 6.2E-93 796.5 81.8 360 7-396 48-421 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 1E-92 2.2E-97 815.1 32.1 392 7-426 3-419 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 1.4E-92 3.1E-97 803.3 29.5 356 6-397 3-367 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 1.9E-86 4.1E-91 730.0 40.7 337 5-379 4-344 (607)
6 PLN03188 kinesin-12 family pro 100.0 3.3E-84 7.3E-89 767.7 33.5 354 7-395 97-462 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 6.8E-81 1.5E-85 702.5 34.5 361 7-397 3-382 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 1.8E-81 3.9E-86 742.9 28.8 348 7-397 5-363 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 2.8E-80 6.1E-85 692.2 29.9 325 9-366 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 8.4E-80 1.8E-84 688.7 28.5 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 9.5E-78 2.1E-82 673.3 29.6 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.4E-77 5.1E-82 674.7 30.6 337 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.1E-76 2.3E-81 669.4 30.1 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 1.5E-76 3.2E-81 666.4 30.1 337 8-367 1-341 (341)
15 cd01367 KISc_KIF2_like Kinesin 100.0 1.9E-75 4.1E-80 649.8 29.0 307 9-364 2-322 (322)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.3E-75 7.1E-80 650.7 30.7 320 8-366 2-325 (325)
17 cd01371 KISc_KIF3 Kinesin moto 100.0 2.1E-75 4.7E-80 652.9 29.1 323 9-366 2-333 (333)
18 cd01376 KISc_KID_like Kinesin 100.0 3.6E-74 7.8E-79 639.3 26.9 308 9-364 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 1.4E-73 2.9E-78 636.2 28.7 317 9-366 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.6E-73 5.6E-78 635.9 28.5 319 9-364 1-334 (334)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 1.8E-72 3.9E-77 663.3 25.0 325 7-372 313-646 (670)
22 cd01366 KISc_C_terminal Kinesi 100.0 1.2E-71 2.5E-76 623.6 29.9 321 7-368 1-328 (329)
23 smart00129 KISc Kinesin motor, 100.0 5.4E-71 1.2E-75 620.4 29.8 327 9-373 1-335 (335)
24 KOG0246 Kinesin-like protein [ 100.0 4.3E-70 9.3E-75 597.5 25.5 323 6-371 206-546 (676)
25 KOG0247 Kinesin-like protein [ 100.0 9.5E-69 2.1E-73 603.2 35.0 334 8-374 31-444 (809)
26 PF00225 Kinesin: Kinesin moto 100.0 2.3E-69 4.9E-74 607.9 20.0 322 15-366 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 4.1E-68 8.8E-73 595.9 28.9 318 9-364 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 6E-62 1.3E-66 573.3 28.7 290 45-374 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 4.3E-49 9.3E-54 404.8 16.8 179 64-345 8-186 (186)
30 KOG0161 Myosin class II heavy 99.9 5.5E-22 1.2E-26 252.0 46.2 473 368-914 827-1355(1930)
31 KOG0161 Myosin class II heavy 99.1 1.2E-05 2.6E-10 104.9 56.7 45 859-903 1497-1541(1930)
32 PF01576 Myosin_tail_1: Myosin 99.1 7E-12 1.5E-16 155.9 0.0 240 650-914 10-297 (859)
33 PRK02224 chromosome segregatio 98.8 0.0011 2.5E-08 84.8 53.6 48 862-909 594-641 (880)
34 KOG0612 Rho-associated, coiled 98.6 0.00062 1.3E-08 83.7 41.9 133 795-933 702-837 (1317)
35 PRK02224 chromosome segregatio 98.6 0.0078 1.7E-07 77.1 59.5 14 85-98 27-40 (880)
36 KOG0612 Rho-associated, coiled 98.5 0.00012 2.6E-09 89.8 33.1 203 491-706 619-844 (1317)
37 TIGR00606 rad50 rad50. This fa 98.5 0.0096 2.1E-07 79.2 52.9 110 497-624 794-903 (1311)
38 PF00038 Filament: Intermediat 98.5 0.00034 7.4E-09 78.3 33.9 100 525-628 44-143 (312)
39 TIGR00606 rad50 rad50. This fa 98.5 0.018 3.8E-07 76.7 54.5 31 796-826 970-1000(1311)
40 PF07888 CALCOCO1: Calcium bin 98.4 0.0048 1.1E-07 71.8 41.5 20 576-595 218-237 (546)
41 PRK03918 chromosome segregatio 98.4 0.019 4.1E-07 73.7 60.7 14 85-98 27-40 (880)
42 PF12128 DUF3584: Protein of u 98.4 0.011 2.5E-07 77.6 49.3 95 496-591 314-408 (1201)
43 KOG4674 Uncharacterized conser 98.4 0.029 6.2E-07 73.3 55.8 266 635-906 1061-1371(1822)
44 PF07888 CALCOCO1: Calcium bin 98.2 0.028 6E-07 65.7 43.0 45 726-770 412-457 (546)
45 KOG4674 Uncharacterized conser 98.2 0.072 1.6E-06 69.7 57.3 163 535-697 689-861 (1822)
46 COG5059 KIP1 Kinesin-like prot 98.2 3.6E-08 7.8E-13 117.6 -8.5 256 2-305 299-566 (568)
47 PF01576 Myosin_tail_1: Myosin 98.2 3.7E-07 8E-12 114.2 0.0 190 407-628 34-234 (859)
48 KOG0977 Nuclear envelope prote 98.2 0.0071 1.5E-07 70.5 34.6 47 859-905 341-387 (546)
49 TIGR02168 SMC_prok_B chromosom 98.1 0.086 1.9E-06 69.8 49.9 16 83-98 25-40 (1179)
50 TIGR02169 SMC_prok_A chromosom 98.1 0.051 1.1E-06 72.0 47.2 14 85-98 27-40 (1164)
51 KOG4643 Uncharacterized coiled 98.1 0.054 1.2E-06 66.0 47.6 108 532-655 261-371 (1195)
52 TIGR02169 SMC_prok_A chromosom 98.1 0.071 1.5E-06 70.6 48.0 7 924-930 562-568 (1164)
53 KOG4673 Transcription factor T 98.0 0.059 1.3E-06 62.9 41.3 38 526-563 400-437 (961)
54 PRK03918 chromosome segregatio 98.0 0.16 3.4E-06 65.4 61.8 29 532-560 304-332 (880)
55 TIGR02168 SMC_prok_B chromosom 98.0 0.2 4.2E-06 66.5 57.2 38 727-764 673-711 (1179)
56 COG1196 Smc Chromosome segrega 97.9 0.08 1.7E-06 69.7 42.7 31 65-98 11-41 (1163)
57 KOG0964 Structural maintenance 97.9 0.13 2.8E-06 62.7 40.6 150 578-765 272-425 (1200)
58 KOG4643 Uncharacterized coiled 97.9 0.15 3.3E-06 62.3 47.8 94 535-628 322-434 (1195)
59 KOG0971 Microtubule-associated 97.8 0.15 3.3E-06 61.4 43.7 43 652-698 400-442 (1243)
60 KOG0976 Rho/Rac1-interacting s 97.8 0.16 3.4E-06 60.3 48.1 51 581-634 266-316 (1265)
61 COG1196 Smc Chromosome segrega 97.8 0.37 7.9E-06 63.6 47.1 37 858-894 458-494 (1163)
62 PF00038 Filament: Intermediat 97.7 0.13 2.8E-06 57.5 37.1 43 726-768 264-307 (312)
63 KOG0977 Nuclear envelope prote 97.6 0.082 1.8E-06 61.9 30.9 135 502-672 42-179 (546)
64 PF10174 Cast: RIM-binding pro 97.6 0.41 8.8E-06 59.2 51.1 34 407-440 109-142 (775)
65 PF10174 Cast: RIM-binding pro 97.6 0.41 8.9E-06 59.2 50.7 146 738-907 358-505 (775)
66 PRK11637 AmiB activator; Provi 97.5 0.1 2.2E-06 61.2 29.9 72 597-668 179-253 (428)
67 PF09726 Macoilin: Transmembra 97.5 0.057 1.2E-06 66.2 28.4 117 634-770 538-655 (697)
68 KOG0976 Rho/Rac1-interacting s 97.4 0.53 1.1E-05 56.2 40.1 28 796-823 330-357 (1265)
69 PF12128 DUF3584: Protein of u 97.4 1 2.3E-05 59.6 54.6 88 47-146 55-151 (1201)
70 PF00261 Tropomyosin: Tropomyo 97.4 0.022 4.8E-07 61.0 21.4 96 533-632 132-227 (237)
71 PRK11637 AmiB activator; Provi 97.4 0.12 2.6E-06 60.6 28.7 71 610-680 181-251 (428)
72 KOG0971 Microtubule-associated 97.3 0.69 1.5E-05 56.1 39.1 64 634-697 290-356 (1243)
73 PRK01156 chromosome segregatio 97.3 1.1 2.3E-05 57.8 54.4 49 854-902 675-723 (895)
74 KOG1029 Endocytic adaptor prot 97.3 0.65 1.4E-05 55.4 33.9 17 107-123 43-59 (1118)
75 KOG0933 Structural maintenance 97.3 0.93 2E-05 55.9 43.4 68 832-899 950-1019(1174)
76 PRK04778 septation ring format 97.3 0.85 1.8E-05 55.4 40.0 151 576-765 170-338 (569)
77 PF09726 Macoilin: Transmembra 97.2 0.082 1.8E-06 64.8 26.2 138 742-892 493-633 (697)
78 KOG0250 DNA repair protein RAD 97.2 1.1 2.4E-05 56.0 48.3 19 79-98 61-79 (1074)
79 PRK01156 chromosome segregatio 97.2 1.4 3E-05 56.8 59.4 16 83-98 25-40 (895)
80 PF09755 DUF2046: Uncharacteri 97.2 0.53 1.2E-05 51.3 30.5 33 408-440 23-55 (310)
81 PF06160 EzrA: Septation ring 97.0 1.3 2.9E-05 53.6 41.3 249 577-914 167-433 (560)
82 KOG0964 Structural maintenance 96.8 2.1 4.6E-05 52.7 34.2 43 724-766 328-371 (1200)
83 PRK04863 mukB cell division pr 96.8 3.6 7.9E-05 55.0 49.1 16 83-98 29-44 (1486)
84 KOG0996 Structural maintenance 96.8 2.6 5.5E-05 53.2 40.5 77 837-913 519-595 (1293)
85 KOG0994 Extracellular matrix g 96.7 2.8 6E-05 52.4 46.3 82 353-445 1177-1258(1758)
86 PHA02562 46 endonuclease subun 96.7 1.8 3.8E-05 52.6 31.7 16 83-98 29-44 (562)
87 PF09755 DUF2046: Uncharacteri 96.6 1.4 3.1E-05 48.0 27.7 56 540-595 140-195 (310)
88 PRK04778 septation ring format 96.5 3.1 6.7E-05 50.6 43.4 23 498-520 201-223 (569)
89 PHA02562 46 endonuclease subun 96.5 2.5 5.4E-05 51.3 31.0 30 532-561 252-281 (562)
90 PF15070 GOLGA2L5: Putative go 96.3 4 8.7E-05 49.6 43.5 29 738-766 287-315 (617)
91 KOG1029 Endocytic adaptor prot 96.3 3.9 8.4E-05 49.2 38.9 24 738-761 494-517 (1118)
92 PF10481 CENP-F_N: Cenp-F N-te 96.2 0.36 7.9E-06 50.9 18.0 164 535-767 18-192 (307)
93 KOG0250 DNA repair protein RAD 96.2 5.5 0.00012 50.2 44.9 41 628-668 331-371 (1074)
94 KOG4673 Transcription factor T 96.1 4.3 9.4E-05 48.1 50.2 91 599-692 541-631 (961)
95 COG4942 Membrane-bound metallo 96.1 3.6 7.9E-05 47.0 28.6 50 497-551 61-110 (420)
96 COG4942 Membrane-bound metallo 96.0 3.9 8.5E-05 46.7 28.6 22 647-668 223-244 (420)
97 COG0556 UvrB Helicase subunit 96.0 0.0035 7.7E-08 71.6 2.1 93 46-144 3-99 (663)
98 KOG0933 Structural maintenance 96.0 6.7 0.00015 48.8 39.1 120 535-657 677-796 (1174)
99 KOG0995 Centromere-associated 95.9 5 0.00011 47.1 45.1 90 605-695 304-393 (581)
100 PF05667 DUF812: Protein of un 95.9 6.1 0.00013 47.9 35.0 43 725-767 486-528 (594)
101 PF06160 EzrA: Septation ring 95.8 6.6 0.00014 47.6 40.6 22 499-520 198-219 (560)
102 COG3883 Uncharacterized protei 95.8 3.5 7.7E-05 44.2 25.3 90 580-669 129-218 (265)
103 PF09730 BicD: Microtubule-ass 95.8 7.5 0.00016 47.8 43.9 151 496-655 28-184 (717)
104 KOG2129 Uncharacterized conser 95.6 4.3 9.3E-05 45.4 23.6 44 611-654 255-298 (552)
105 COG1579 Zn-ribbon protein, pos 95.5 2.1 4.6E-05 45.3 20.6 25 536-560 53-77 (239)
106 KOG0946 ER-Golgi vesicle-tethe 95.5 8.8 0.00019 46.7 28.3 51 580-633 666-716 (970)
107 PF00261 Tropomyosin: Tropomyo 95.4 4.8 0.0001 43.1 29.3 27 796-822 141-167 (237)
108 PF05557 MAD: Mitotic checkpoi 95.3 0.018 3.8E-07 71.9 5.2 50 578-627 257-306 (722)
109 PF05557 MAD: Mitotic checkpoi 95.3 0.0048 1E-07 77.0 0.0 18 607-624 183-200 (722)
110 KOG0996 Structural maintenance 95.0 15 0.00033 46.7 56.3 61 606-666 518-581 (1293)
111 KOG0980 Actin-binding protein 95.0 13 0.00028 45.8 33.4 53 371-431 325-377 (980)
112 PF05701 WEMBL: Weak chloropla 94.7 13 0.00029 44.6 52.1 270 605-912 168-438 (522)
113 PRK04863 mukB cell division pr 94.6 25 0.00054 47.5 47.1 80 578-660 383-468 (1486)
114 PF05010 TACC: Transforming ac 94.6 6.9 0.00015 40.8 21.6 95 533-628 60-162 (207)
115 PRK09039 hypothetical protein; 94.5 6.3 0.00014 44.7 22.3 107 499-628 50-156 (343)
116 PF15070 GOLGA2L5: Putative go 94.5 16 0.00034 44.7 51.3 64 528-591 115-180 (617)
117 PF14662 CCDC155: Coiled-coil 94.5 6.4 0.00014 40.1 25.5 131 536-696 9-139 (193)
118 COG1579 Zn-ribbon protein, pos 94.4 8.2 0.00018 41.0 21.7 49 498-558 34-82 (239)
119 PF04849 HAP1_N: HAP1 N-termin 94.4 9.7 0.00021 41.8 22.2 153 576-765 102-269 (306)
120 PF15066 CAGE1: Cancer-associa 94.2 13 0.00028 42.6 25.0 125 521-663 383-507 (527)
121 COG2805 PilT Tfp pilus assembl 94.2 0.024 5.3E-07 61.0 2.1 33 66-98 110-142 (353)
122 PF05622 HOOK: HOOK protein; 93.9 0.016 3.4E-07 72.3 0.0 28 531-558 394-421 (713)
123 PF12325 TMF_TATA_bd: TATA ele 93.9 2.4 5.3E-05 40.1 14.4 88 535-630 30-117 (120)
124 PF14662 CCDC155: Coiled-coil 93.8 8.6 0.00019 39.1 21.6 63 501-563 66-130 (193)
125 PF00308 Bac_DnaA: Bacterial d 93.7 0.022 4.8E-07 60.3 0.5 49 46-98 3-51 (219)
126 KOG0963 Transcription factor/C 93.3 23 0.00049 42.3 38.8 98 645-766 289-398 (629)
127 PRK06893 DNA replication initi 93.3 0.039 8.5E-07 58.8 1.6 46 46-98 11-56 (229)
128 TIGR03007 pepcterm_ChnLen poly 92.9 14 0.0003 44.2 22.8 94 499-592 165-268 (498)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.9 9.6 0.00021 36.8 19.8 126 604-762 5-130 (132)
130 COG4372 Uncharacterized protei 92.8 19 0.00042 40.2 29.3 81 293-396 8-91 (499)
131 COG4372 Uncharacterized protei 92.7 20 0.00043 40.1 30.1 10 743-752 279-288 (499)
132 PF09787 Golgin_A5: Golgin sub 92.7 28 0.00062 41.7 32.4 141 605-768 284-430 (511)
133 PF12718 Tropomyosin_1: Tropom 92.3 12 0.00026 36.7 18.1 52 535-591 42-93 (143)
134 PF08317 Spc7: Spc7 kinetochor 92.1 11 0.00024 42.4 19.3 16 613-628 241-256 (325)
135 PRK06620 hypothetical protein; 92.0 0.042 9.1E-07 57.9 -0.3 48 46-98 11-61 (214)
136 PF14988 DUF4515: Domain of un 91.9 18 0.00039 37.8 25.1 79 528-611 40-123 (206)
137 KOG0999 Microtubule-associated 91.9 31 0.00067 40.4 42.9 162 499-667 12-189 (772)
138 KOG0994 Extracellular matrix g 91.8 47 0.001 42.3 38.0 104 590-697 1593-1696(1758)
139 PF08826 DMPK_coil: DMPK coile 91.7 2.2 4.7E-05 35.2 9.4 57 851-907 2-58 (61)
140 PF08614 ATG16: Autophagy prot 91.7 2.5 5.4E-05 43.8 12.5 30 533-562 72-101 (194)
141 PF05701 WEMBL: Weak chloropla 91.6 38 0.00082 40.8 51.3 17 379-395 34-50 (522)
142 COG4477 EzrA Negative regulato 91.5 34 0.00074 40.2 37.8 83 644-765 251-337 (570)
143 PF14988 DUF4515: Domain of un 91.5 20 0.00044 37.5 25.7 79 544-633 31-109 (206)
144 PF15254 CCDC14: Coiled-coil d 91.4 20 0.00043 43.7 20.6 66 496-561 395-467 (861)
145 PRK11281 hypothetical protein; 91.4 59 0.0013 42.6 36.7 100 667-766 221-321 (1113)
146 PF10473 CENP-F_leu_zip: Leuci 91.3 9.8 0.00021 37.1 15.1 60 499-563 21-80 (140)
147 COG5185 HEC1 Protein involved 91.1 33 0.00072 39.4 35.7 63 606-668 484-546 (622)
148 PRK09087 hypothetical protein; 91.1 0.09 1.9E-06 55.9 1.1 46 46-98 16-61 (226)
149 PRK09039 hypothetical protein; 91.0 27 0.00058 39.6 20.8 61 629-692 139-199 (343)
150 PF12718 Tropomyosin_1: Tropom 90.9 17 0.00037 35.7 17.3 60 499-558 77-138 (143)
151 PF05667 DUF812: Protein of un 90.8 46 0.001 40.5 34.4 24 498-521 331-354 (594)
152 PF15066 CAGE1: Cancer-associa 90.8 36 0.00077 39.2 25.3 117 602-765 404-524 (527)
153 PF09730 BicD: Microtubule-ass 90.8 51 0.0011 40.8 50.1 157 535-692 265-449 (717)
154 KOG0018 Structural maintenance 90.6 59 0.0013 41.4 44.8 137 497-633 264-433 (1141)
155 COG2804 PulE Type II secretory 90.4 0.13 2.8E-06 59.7 1.6 31 70-100 247-277 (500)
156 KOG1003 Actin filament-coating 90.3 23 0.0005 36.1 18.5 35 406-440 5-39 (205)
157 PRK14086 dnaA chromosomal repl 90.0 0.098 2.1E-06 62.8 0.3 49 46-98 283-331 (617)
158 PF14915 CCDC144C: CCDC144C pr 89.9 33 0.00072 37.3 32.1 104 798-909 139-249 (305)
159 PF05010 TACC: Transforming ac 89.8 28 0.0006 36.4 25.8 82 609-697 104-185 (207)
160 PF05622 HOOK: HOOK protein; 89.8 0.097 2.1E-06 65.3 0.0 23 891-913 625-647 (713)
161 PF09728 Taxilin: Myosin-like 89.5 39 0.00085 37.7 36.5 73 617-693 203-278 (309)
162 KOG0999 Microtubule-associated 89.5 50 0.0011 38.8 46.2 117 535-655 135-257 (772)
163 KOG2129 Uncharacterized conser 89.1 45 0.00097 37.7 26.3 200 539-765 104-320 (552)
164 KOG0804 Cytoplasmic Zn-finger 89.0 10 0.00022 43.2 14.8 39 193-237 120-159 (493)
165 PRK00149 dnaA chromosomal repl 89.0 0.27 5.9E-06 58.0 2.9 49 46-98 117-165 (450)
166 PF04849 HAP1_N: HAP1 N-termin 88.9 41 0.00089 37.1 29.0 135 534-697 166-300 (306)
167 PRK14088 dnaA chromosomal repl 88.8 0.13 2.9E-06 60.2 0.2 48 46-98 100-147 (440)
168 PRK05642 DNA replication initi 88.7 0.19 4.2E-06 53.7 1.4 45 46-98 14-62 (234)
169 TIGR01005 eps_transp_fam exopo 88.7 56 0.0012 41.4 23.5 65 498-562 197-264 (754)
170 TIGR03185 DNA_S_dndD DNA sulfu 88.7 72 0.0016 39.6 32.5 63 606-668 227-289 (650)
171 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.4 25 0.00054 34.0 19.4 83 590-697 47-129 (132)
172 PF09738 DUF2051: Double stran 87.9 49 0.0011 36.7 20.1 54 576-632 82-135 (302)
173 COG0593 DnaA ATPase involved i 87.6 0.2 4.3E-06 57.3 0.6 50 45-98 81-130 (408)
174 smart00787 Spc7 Spc7 kinetocho 87.5 40 0.00086 37.7 18.5 26 608-633 231-256 (312)
175 COG5008 PilU Tfp pilus assembl 87.5 0.39 8.5E-06 50.9 2.7 44 69-112 115-160 (375)
176 PF04851 ResIII: Type III rest 86.9 0.76 1.6E-05 46.3 4.4 30 69-98 12-42 (184)
177 PRK08727 hypothetical protein; 86.7 0.27 5.8E-06 52.6 1.0 44 46-98 14-58 (233)
178 PF13245 AAA_19: Part of AAA d 86.4 0.38 8.3E-06 41.8 1.5 25 73-98 3-27 (76)
179 PRK06526 transposase; Provisio 86.3 0.29 6.4E-06 52.9 1.0 15 84-98 101-115 (254)
180 PF00437 T2SE: Type II/IV secr 86.1 0.45 9.8E-06 51.9 2.3 34 65-98 108-144 (270)
181 TIGR00362 DnaA chromosomal rep 86.0 0.27 5.9E-06 57.1 0.6 49 46-98 105-153 (405)
182 KOG0804 Cytoplasmic Zn-finger 85.9 22 0.00047 40.7 15.1 34 527-560 350-386 (493)
183 PRK08084 DNA replication initi 85.9 0.35 7.6E-06 51.7 1.3 45 46-98 17-62 (235)
184 KOG4807 F-actin binding protei 85.8 66 0.0014 36.1 29.6 261 500-878 296-583 (593)
185 PF00769 ERM: Ezrin/radixin/mo 85.7 43 0.00093 36.1 17.1 92 574-672 8-99 (246)
186 PRK12377 putative replication 85.7 0.31 6.7E-06 52.5 0.8 49 47-98 70-118 (248)
187 TIGR01420 pilT_fam pilus retra 85.4 0.61 1.3E-05 52.9 3.0 31 68-98 109-139 (343)
188 PRK14087 dnaA chromosomal repl 85.2 0.3 6.5E-06 57.4 0.4 48 47-98 111-158 (450)
189 PRK10929 putative mechanosensi 85.2 1.4E+02 0.003 39.3 40.5 29 670-698 205-233 (1109)
190 PF15619 Lebercilin: Ciliary p 85.2 50 0.0011 34.2 25.8 51 647-697 32-82 (194)
191 TIGR03017 EpsF chain length de 84.9 87 0.0019 36.7 23.9 95 497-591 173-274 (444)
192 TIGR03420 DnaA_homol_Hda DnaA 84.6 0.42 9.2E-06 50.4 1.2 46 46-98 10-55 (226)
193 cd00009 AAA The AAA+ (ATPases 84.6 0.5 1.1E-05 45.2 1.6 29 70-98 8-36 (151)
194 KOG1899 LAR transmembrane tyro 84.4 75 0.0016 37.9 18.8 44 582-628 178-221 (861)
195 COG1474 CDC6 Cdc6-related prot 84.4 1.2 2.6E-05 50.9 4.8 28 71-98 31-59 (366)
196 COG3883 Uncharacterized protei 84.1 67 0.0015 34.8 21.4 46 627-672 148-193 (265)
197 PRK08116 hypothetical protein; 84.1 0.34 7.3E-06 53.0 0.2 50 46-98 80-131 (268)
198 KOG0995 Centromere-associated 83.7 1E+02 0.0023 36.6 43.8 27 535-561 259-285 (581)
199 PF15619 Lebercilin: Ciliary p 83.3 60 0.0013 33.6 25.4 23 535-557 12-34 (194)
200 PF08614 ATG16: Autophagy prot 83.2 10 0.00023 39.2 10.8 99 796-902 74-172 (194)
201 PRK10436 hypothetical protein; 83.1 0.55 1.2E-05 55.2 1.4 28 72-99 209-236 (462)
202 PRK08903 DnaA regulatory inact 83.0 0.5 1.1E-05 50.1 1.0 47 46-98 13-59 (227)
203 PF13851 GAS: Growth-arrest sp 82.9 64 0.0014 33.6 20.7 36 662-697 132-167 (201)
204 PRK07952 DNA replication prote 82.8 0.48 1E-05 50.9 0.7 50 46-98 67-116 (244)
205 PRK00411 cdc6 cell division co 82.7 0.57 1.2E-05 54.1 1.4 27 72-98 45-72 (394)
206 TIGR02533 type_II_gspE general 82.7 0.62 1.3E-05 55.3 1.7 28 72-99 233-260 (486)
207 KOG0946 ER-Golgi vesicle-tethe 82.7 1.3E+02 0.0029 37.2 30.2 39 658-697 900-938 (970)
208 PF04111 APG6: Autophagy prote 82.7 22 0.00048 39.7 13.8 26 535-560 43-68 (314)
209 PF10168 Nup88: Nuclear pore c 82.6 48 0.001 41.5 17.8 25 671-695 687-711 (717)
210 TIGR02538 type_IV_pilB type IV 82.5 0.57 1.2E-05 56.8 1.3 28 72-99 307-334 (564)
211 cd01131 PilT Pilus retraction 82.4 0.55 1.2E-05 48.8 1.0 18 81-98 1-18 (198)
212 KOG4809 Rab6 GTPase-interactin 82.2 1.1E+02 0.0025 36.0 29.2 169 498-668 376-569 (654)
213 PF05673 DUF815: Protein of un 82.0 0.88 1.9E-05 48.4 2.3 26 73-98 43-69 (249)
214 TIGR02525 plasmid_TraJ plasmid 82.0 0.73 1.6E-05 52.6 1.8 27 71-98 140-166 (372)
215 TIGR02524 dot_icm_DotB Dot/Icm 81.9 0.75 1.6E-05 52.4 1.9 26 73-98 126-151 (358)
216 cd00046 DEXDc DEAD-like helica 81.7 0.59 1.3E-05 44.1 0.9 15 84-98 3-17 (144)
217 TIGR00631 uvrb excinuclease AB 81.6 0.5 1.1E-05 58.1 0.4 92 48-145 2-97 (655)
218 KOG0962 DNA repair protein RAD 81.1 2E+02 0.0042 38.0 52.1 95 838-932 1000-1101(1294)
219 PF13401 AAA_22: AAA domain; P 81.1 0.55 1.2E-05 44.7 0.4 18 81-98 4-21 (131)
220 smart00053 DYNc Dynamin, GTPas 81.0 2.5 5.4E-05 45.3 5.3 54 194-274 85-138 (240)
221 TIGR02928 orc1/cdc6 family rep 81.0 0.58 1.3E-05 53.4 0.6 28 71-98 29-57 (365)
222 PF10146 zf-C4H2: Zinc finger- 80.7 63 0.0014 34.4 15.5 27 535-561 32-58 (230)
223 TIGR02782 TrbB_P P-type conjug 80.6 0.56 1.2E-05 52.1 0.3 28 70-98 122-149 (299)
224 KOG0978 E3 ubiquitin ligase in 80.5 1.6E+02 0.0034 36.5 50.0 22 677-698 427-448 (698)
225 PF01935 DUF87: Domain of unkn 80.3 0.72 1.6E-05 48.9 1.0 16 83-98 25-40 (229)
226 smart00382 AAA ATPases associa 80.0 0.75 1.6E-05 43.4 0.9 17 82-98 3-19 (148)
227 PF13604 AAA_30: AAA domain; P 79.9 0.94 2E-05 47.0 1.7 28 71-98 8-35 (196)
228 PF10168 Nup88: Nuclear pore c 79.9 1.3E+02 0.0028 37.7 20.3 24 260-283 367-390 (717)
229 COG2433 Uncharacterized conser 79.7 33 0.00073 40.8 14.0 16 109-124 164-179 (652)
230 PF00270 DEAD: DEAD/DEAH box h 79.6 0.96 2.1E-05 45.0 1.6 25 72-98 7-31 (169)
231 PRK06835 DNA replication prote 79.5 0.92 2E-05 51.0 1.6 28 70-98 173-200 (329)
232 KOG0980 Actin-binding protein 79.5 1.8E+02 0.0038 36.5 40.4 143 529-697 359-504 (980)
233 KOG1853 LIS1-interacting prote 78.6 95 0.0021 32.9 23.4 22 570-591 44-65 (333)
234 KOG0018 Structural maintenance 78.4 2.1E+02 0.0045 36.8 35.8 40 840-879 438-477 (1141)
235 PRK08181 transposase; Validate 78.4 0.83 1.8E-05 49.8 0.7 19 78-98 105-123 (269)
236 cd01129 PulE-GspE PulE/GspE Th 78.3 1.1 2.4E-05 48.8 1.7 27 72-98 71-97 (264)
237 PF10481 CENP-F_N: Cenp-F N-te 77.9 1.1E+02 0.0023 33.1 17.2 105 650-774 27-132 (307)
238 KOG2991 Splicing regulator [RN 77.7 69 0.0015 34.0 14.1 54 494-559 256-309 (330)
239 PF12846 AAA_10: AAA-like doma 77.6 0.94 2E-05 49.7 0.9 18 81-98 1-18 (304)
240 PF12325 TMF_TATA_bd: TATA ele 77.5 67 0.0015 30.6 13.8 52 372-435 9-60 (120)
241 PF11559 ADIP: Afadin- and alp 77.1 79 0.0017 31.2 14.5 72 535-624 52-123 (151)
242 PF06120 Phage_HK97_TLTM: Tail 76.8 1.3E+02 0.0028 33.4 18.1 127 499-629 45-175 (301)
243 PF15294 Leu_zip: Leucine zipp 76.7 83 0.0018 34.3 15.0 142 507-693 130-277 (278)
244 KOG0926 DEAH-box RNA helicase 76.6 1.7 3.7E-05 52.6 2.6 24 75-98 263-288 (1172)
245 PTZ00112 origin recognition co 76.3 2.9 6.2E-05 52.1 4.4 29 70-98 768-798 (1164)
246 PF04156 IncA: IncA protein; 76.0 77 0.0017 32.5 14.6 9 578-586 130-138 (191)
247 PRK12422 chromosomal replicati 75.9 1.2 2.5E-05 52.4 1.0 49 46-98 106-158 (445)
248 PF00448 SRP54: SRP54-type pro 75.5 1.1 2.4E-05 46.5 0.6 16 83-98 3-18 (196)
249 COG1340 Uncharacterized archae 75.2 1.4E+02 0.0029 32.9 36.3 31 630-660 51-81 (294)
250 PRK08939 primosomal protein Dn 75.1 0.98 2.1E-05 50.3 0.2 50 48-99 124-174 (306)
251 PF13479 AAA_24: AAA domain 75.0 1.4 2.9E-05 46.5 1.2 20 81-100 3-22 (213)
252 PRK06921 hypothetical protein; 74.6 1.1 2.3E-05 49.0 0.2 18 81-98 117-134 (266)
253 PF13514 AAA_27: AAA domain 74.5 3E+02 0.0065 36.6 55.3 79 380-464 151-229 (1111)
254 PF01637 Arch_ATPase: Archaeal 74.5 1.3 2.8E-05 46.4 0.9 29 70-98 9-37 (234)
255 PRK13833 conjugal transfer pro 74.4 1.1 2.3E-05 50.3 0.2 27 71-98 135-161 (323)
256 PF09304 Cortex-I_coil: Cortex 74.4 73 0.0016 29.4 15.1 56 575-633 13-68 (107)
257 PRK13894 conjugal transfer ATP 74.3 1.5 3.3E-05 49.1 1.4 27 71-98 139-165 (319)
258 PF06309 Torsin: Torsin; Inte 74.2 4.3 9.3E-05 38.8 4.2 69 69-150 37-114 (127)
259 PF13207 AAA_17: AAA domain; P 74.1 1.3 2.9E-05 41.5 0.8 16 83-98 1-16 (121)
260 TIGR01843 type_I_hlyD type I s 74.1 1.7E+02 0.0038 33.7 22.7 19 679-697 252-270 (423)
261 TIGR01005 eps_transp_fam exopo 74.1 2.5E+02 0.0054 35.5 25.8 19 288-306 78-96 (754)
262 PF00004 AAA: ATPase family as 74.0 1.3 2.8E-05 41.9 0.7 15 84-98 1-15 (132)
263 PF14992 TMCO5: TMCO5 family 73.8 1.4E+02 0.0031 32.5 17.7 152 500-663 23-182 (280)
264 PF10146 zf-C4H2: Zinc finger- 73.7 1.2E+02 0.0026 32.4 15.2 25 537-561 3-27 (230)
265 PF15397 DUF4618: Domain of un 73.6 1.4E+02 0.003 32.3 28.7 91 537-629 8-101 (258)
266 TIGR01843 type_I_hlyD type I s 73.5 1.8E+02 0.0039 33.6 22.7 29 799-827 242-270 (423)
267 PF01695 IstB_IS21: IstB-like 73.2 1.8 3.9E-05 44.2 1.5 30 69-98 35-64 (178)
268 KOG4593 Mitotic checkpoint pro 73.2 2.3E+02 0.005 34.7 42.0 27 593-619 149-175 (716)
269 PF08317 Spc7: Spc7 kinetochor 73.1 1.7E+02 0.0036 33.0 26.9 28 600-627 175-202 (325)
270 PF10473 CENP-F_leu_zip: Leuci 72.9 98 0.0021 30.3 17.7 29 600-628 78-106 (140)
271 KOG0989 Replication factor C, 72.9 1.7 3.7E-05 47.4 1.3 37 62-98 37-74 (346)
272 PF13191 AAA_16: AAA ATPase do 72.4 1.2 2.7E-05 45.0 0.1 22 77-98 20-41 (185)
273 PF04111 APG6: Autophagy prote 72.3 57 0.0012 36.5 13.2 25 537-561 11-35 (314)
274 KOG0963 Transcription factor/C 72.1 2.3E+02 0.005 34.2 39.7 23 535-557 59-81 (629)
275 PF13086 AAA_11: AAA domain; P 71.9 1.8 4E-05 45.3 1.3 25 73-98 10-34 (236)
276 KOG0340 ATP-dependent RNA heli 71.8 8.4 0.00018 42.9 6.2 27 72-100 37-63 (442)
277 KOG2373 Predicted mitochondria 71.8 2 4.3E-05 47.4 1.5 27 71-98 261-290 (514)
278 COG4962 CpaF Flp pilus assembl 71.7 2 4.2E-05 47.9 1.5 78 70-153 163-270 (355)
279 cd01130 VirB11-like_ATPase Typ 71.6 2.1 4.4E-05 44.0 1.5 29 69-98 14-42 (186)
280 COG1484 DnaC DNA replication p 71.5 1.6 3.5E-05 47.2 0.8 49 46-98 74-122 (254)
281 PHA02544 44 clamp loader, smal 71.0 1.8 3.9E-05 48.3 1.1 21 78-98 39-60 (316)
282 PF14073 Cep57_CLD: Centrosome 70.7 1.3E+02 0.0027 30.6 18.4 44 586-629 118-161 (178)
283 PF00910 RNA_helicase: RNA hel 70.7 2.6 5.7E-05 39.0 1.9 26 84-122 1-26 (107)
284 PRK06547 hypothetical protein; 70.6 2.7 5.8E-05 42.7 2.1 30 69-98 3-32 (172)
285 PRK10884 SH3 domain-containing 70.5 55 0.0012 34.3 11.7 16 578-593 93-108 (206)
286 PF00580 UvrD-helicase: UvrD/R 70.0 2 4.3E-05 47.5 1.1 22 77-98 9-30 (315)
287 PRK10884 SH3 domain-containing 69.9 75 0.0016 33.3 12.5 18 680-697 153-170 (206)
288 TIGR01000 bacteriocin_acc bact 69.9 2.3E+02 0.0051 33.4 23.8 21 677-697 288-308 (457)
289 KOG4657 Uncharacterized conser 69.7 1.5E+02 0.0032 31.1 16.0 19 667-685 127-145 (246)
290 KOG4360 Uncharacterized coiled 69.4 97 0.0021 36.2 14.0 46 861-906 255-300 (596)
291 COG2433 Uncharacterized conser 69.4 58 0.0013 38.9 12.6 42 724-765 467-509 (652)
292 PF05911 DUF869: Plant protein 69.2 3.1E+02 0.0068 34.6 31.8 189 500-697 22-224 (769)
293 PF03962 Mnd1: Mnd1 family; I 69.1 76 0.0017 32.7 12.3 34 529-562 63-96 (188)
294 COG0419 SbcC ATPase involved i 69.0 3.5E+02 0.0076 35.1 58.0 17 82-98 26-42 (908)
295 COG1201 Lhr Lhr-like helicases 68.8 7.1 0.00015 48.8 5.5 62 72-147 30-91 (814)
296 PF02562 PhoH: PhoH-like prote 68.7 2.8 6E-05 43.8 1.7 24 73-98 13-36 (205)
297 PRK13851 type IV secretion sys 68.5 2.1 4.6E-05 48.4 0.9 27 71-98 153-179 (344)
298 PLN00020 ribulose bisphosphate 68.3 2.1 4.6E-05 48.4 0.8 51 47-98 111-165 (413)
299 PF00769 ERM: Ezrin/radixin/mo 68.1 1.8E+02 0.0039 31.4 16.6 106 548-668 4-109 (246)
300 TIGR03007 pepcterm_ChnLen poly 68.1 2.6E+02 0.0057 33.3 25.8 26 532-557 165-190 (498)
301 COG5185 HEC1 Protein involved 68.1 2.4E+02 0.0052 32.8 37.2 59 499-559 261-319 (622)
302 PF05483 SCP-1: Synaptonemal c 67.7 3E+02 0.0064 33.7 53.3 43 578-620 370-416 (786)
303 PHA00729 NTP-binding motif con 67.7 3.3 7.1E-05 43.8 2.0 29 70-98 6-34 (226)
304 PRK13900 type IV secretion sys 67.7 2.7 5.8E-05 47.4 1.5 27 71-98 151-177 (332)
305 PRK13764 ATPase; Provisional 67.6 2.7 5.8E-05 50.9 1.6 24 75-98 251-274 (602)
306 PF13671 AAA_33: AAA domain; P 67.2 2.3 5E-05 41.1 0.8 15 84-98 2-16 (143)
307 PRK12402 replication factor C 66.9 2.8 6.1E-05 47.1 1.5 21 78-98 33-53 (337)
308 KOG0953 Mitochondrial RNA heli 66.7 4.6 9.9E-05 47.3 3.1 43 83-125 193-238 (700)
309 COG1223 Predicted ATPase (AAA+ 66.5 2.5 5.5E-05 45.0 0.9 18 81-98 151-168 (368)
310 TIGR03015 pepcterm_ATPase puta 66.5 3.1 6.8E-05 45.1 1.8 22 77-98 39-60 (269)
311 PF08912 Rho_Binding: Rho Bind 66.5 59 0.0013 27.6 8.7 47 861-907 11-61 (69)
312 KOG0727 26S proteasome regulat 66.2 2.2 4.8E-05 45.0 0.4 118 9-127 98-249 (408)
313 PF07724 AAA_2: AAA domain (Cd 66.0 2.7 5.9E-05 42.6 1.0 17 82-98 4-20 (171)
314 smart00487 DEXDc DEAD-like hel 65.8 3.7 8.1E-05 41.2 2.0 26 72-98 16-41 (201)
315 TIGR03499 FlhF flagellar biosy 65.7 2.6 5.6E-05 46.4 0.9 16 83-98 196-211 (282)
316 PF01580 FtsK_SpoIIIE: FtsK/Sp 65.7 2.3 5E-05 44.2 0.5 16 83-98 40-55 (205)
317 PF02456 Adeno_IVa2: Adenoviru 65.4 2.5 5.5E-05 46.1 0.7 70 83-152 89-186 (369)
318 KOG4360 Uncharacterized coiled 65.3 2.8E+02 0.0061 32.6 18.3 84 650-766 221-304 (596)
319 PRK12723 flagellar biosynthesi 65.3 2.9 6.3E-05 48.0 1.2 18 81-98 174-191 (388)
320 smart00787 Spc7 Spc7 kinetocho 65.1 2.4E+02 0.0051 31.6 26.4 28 600-627 170-197 (312)
321 PF15254 CCDC14: Coiled-coil d 65.1 3.5E+02 0.0076 33.6 22.5 28 642-669 530-557 (861)
322 PF10186 Atg14: UV radiation r 64.8 2.2E+02 0.0047 31.1 18.9 27 536-562 21-47 (302)
323 COG1219 ClpX ATP-dependent pro 64.5 3.1 6.6E-05 45.7 1.1 17 82-98 98-114 (408)
324 cd00268 DEADc DEAD-box helicas 64.5 4.1 8.8E-05 42.1 2.0 26 71-98 28-53 (203)
325 TIGR02903 spore_lon_C ATP-depe 64.4 2.9 6.2E-05 51.3 1.0 43 47-98 150-192 (615)
326 PF06785 UPF0242: Uncharacteri 64.2 2.4E+02 0.0052 31.4 20.3 45 663-707 142-186 (401)
327 KOG4809 Rab6 GTPase-interactin 64.1 3.1E+02 0.0067 32.6 26.6 60 493-557 329-388 (654)
328 PF07728 AAA_5: AAA domain (dy 64.0 2.6 5.7E-05 40.7 0.5 15 84-98 2-16 (139)
329 PF13238 AAA_18: AAA domain; P 63.9 2.8 6E-05 39.4 0.6 15 84-98 1-15 (129)
330 KOG1853 LIS1-interacting prote 63.9 2E+02 0.0044 30.5 18.5 28 613-641 151-178 (333)
331 PF13514 AAA_27: AAA domain 63.8 4.8E+02 0.01 34.8 43.1 46 722-767 786-831 (1111)
332 PRK09183 transposase/IS protei 63.8 2.9 6.3E-05 45.4 0.8 19 78-98 101-119 (259)
333 PRK07003 DNA polymerase III su 63.6 11 0.00024 46.6 5.7 18 81-98 38-55 (830)
334 PF06785 UPF0242: Uncharacteri 63.4 2.5E+02 0.0053 31.3 19.0 21 792-812 197-217 (401)
335 KOG4593 Mitotic checkpoint pro 63.3 3.6E+02 0.0078 33.1 50.3 44 723-766 363-413 (716)
336 PRK14722 flhF flagellar biosyn 63.3 3.2 7E-05 47.4 1.0 18 81-98 137-154 (374)
337 PF13555 AAA_29: P-loop contai 63.1 3.3 7.2E-05 34.4 0.8 15 84-98 26-40 (62)
338 PRK13342 recombination factor 62.9 3.4 7.5E-05 48.1 1.3 27 72-98 27-53 (413)
339 PF05911 DUF869: Plant protein 62.8 4.1E+02 0.0088 33.6 32.0 81 528-628 28-111 (769)
340 smart00763 AAA_PrkA PrkA AAA d 62.7 6.1 0.00013 44.7 3.1 19 80-98 77-95 (361)
341 PF03215 Rad17: Rad17 cell cyc 62.4 4.1 9E-05 48.7 1.8 30 69-98 31-62 (519)
342 TIGR03345 VI_ClpV1 type VI sec 62.1 12 0.00026 47.8 5.9 99 82-209 597-696 (852)
343 TIGR02881 spore_V_K stage V sp 62.0 3.7 8.1E-05 44.5 1.3 18 81-98 42-59 (261)
344 PTZ00424 helicase 45; Provisio 61.7 4.2 9.1E-05 47.0 1.7 26 71-98 57-82 (401)
345 COG1136 SalX ABC-type antimicr 61.6 3.3 7.2E-05 43.8 0.7 20 84-103 34-55 (226)
346 TIGR03185 DNA_S_dndD DNA sulfu 61.2 4.1E+02 0.0088 33.0 41.2 26 743-768 390-415 (650)
347 PF08172 CASP_C: CASP C termin 61.2 1.1E+02 0.0025 32.9 12.3 44 568-628 83-126 (248)
348 PF02841 GBP_C: Guanylate-bind 61.0 98 0.0021 34.3 12.3 111 498-622 186-297 (297)
349 PF07139 DUF1387: Protein of u 60.9 86 0.0019 34.5 11.2 58 683-765 178-235 (302)
350 PF07058 Myosin_HC-like: Myosi 60.6 56 0.0012 35.6 9.5 116 503-621 36-162 (351)
351 COG1382 GimC Prefoldin, chaper 60.0 1.6E+02 0.0034 28.0 11.5 104 503-621 7-110 (119)
352 COG1222 RPT1 ATP-dependent 26S 60.0 3.4 7.4E-05 46.1 0.5 119 8-127 93-245 (406)
353 COG1419 FlhF Flagellar GTP-bin 59.7 4.6 9.9E-05 46.1 1.4 18 81-98 203-220 (407)
354 PRK10536 hypothetical protein; 59.6 5.5 0.00012 43.0 2.0 18 81-98 74-91 (262)
355 COG2256 MGS1 ATPase related to 59.5 4.5 9.8E-05 45.9 1.4 45 48-98 21-65 (436)
356 KOG1937 Uncharacterized conser 59.3 3.4E+02 0.0073 31.5 36.5 39 727-765 386-424 (521)
357 PF06414 Zeta_toxin: Zeta toxi 58.9 4.3 9.3E-05 42.1 1.0 18 81-98 15-32 (199)
358 PRK11776 ATP-dependent RNA hel 58.7 5.4 0.00012 47.1 2.0 25 72-98 34-58 (460)
359 KOG3859 Septins (P-loop GTPase 58.3 9.1 0.0002 41.1 3.2 46 65-110 25-79 (406)
360 cd01126 TraG_VirD4 The TraG/Tr 58.1 4.2 9E-05 46.9 0.8 15 84-98 2-16 (384)
361 PLN03229 acetyl-coenzyme A car 58.1 4.6E+02 0.01 32.7 24.6 40 383-422 433-472 (762)
362 KOG1103 Predicted coiled-coil 57.8 3E+02 0.0066 30.5 22.7 32 565-596 137-168 (561)
363 PF07106 TBPIP: Tat binding pr 57.7 74 0.0016 32.0 9.7 63 491-563 75-137 (169)
364 PF07106 TBPIP: Tat binding pr 57.5 1.2E+02 0.0025 30.6 11.2 26 537-562 81-106 (169)
365 PF12775 AAA_7: P-loop contain 57.4 5.6 0.00012 43.6 1.6 26 72-98 25-50 (272)
366 KOG4460 Nuclear pore complex, 57.3 2E+02 0.0043 34.0 13.7 66 605-670 612-684 (741)
367 PRK13341 recombination factor 56.9 4.9 0.00011 50.1 1.2 21 78-98 49-69 (725)
368 TIGR01618 phage_P_loop phage n 56.8 4.8 0.0001 42.6 0.9 19 81-99 12-30 (220)
369 PF14992 TMCO5: TMCO5 family 56.7 1.2E+02 0.0026 33.0 11.4 58 534-593 115-175 (280)
370 PRK11192 ATP-dependent RNA hel 56.5 6.1 0.00013 46.3 1.9 25 72-98 31-55 (434)
371 COG1125 OpuBA ABC-type proline 56.2 4.8 0.0001 43.0 0.8 12 87-98 33-44 (309)
372 COG1126 GlnQ ABC-type polar am 56.0 5.2 0.00011 41.8 1.0 15 84-98 31-45 (240)
373 KOG0288 WD40 repeat protein Ti 56.0 3.7E+02 0.008 30.9 16.1 67 600-666 4-73 (459)
374 TIGR03819 heli_sec_ATPase heli 55.9 5.8 0.00013 44.9 1.5 29 69-98 167-195 (340)
375 TIGR01242 26Sp45 26S proteasom 55.3 5 0.00011 45.9 0.9 18 81-98 156-173 (364)
376 KOG1899 LAR transmembrane tyro 55.2 4.6E+02 0.0099 31.8 18.7 31 405-435 104-134 (861)
377 KOG0735 AAA+-type ATPase [Post 55.1 8.7 0.00019 46.6 2.7 48 79-126 699-760 (952)
378 PF06048 DUF927: Domain of unk 54.8 6.4 0.00014 43.4 1.6 27 71-98 184-210 (286)
379 PRK13729 conjugal transfer pil 54.8 34 0.00074 39.9 7.4 45 577-624 75-119 (475)
380 KOG2391 Vacuolar sorting prote 54.7 1.1E+02 0.0024 34.1 10.6 29 600-628 216-244 (365)
381 PF10212 TTKRSYEDQ: Predicted 54.6 4.4E+02 0.0095 31.4 27.6 19 288-306 213-231 (518)
382 KOG0962 DNA repair protein RAD 54.6 6.6E+02 0.014 33.5 52.0 42 725-766 512-553 (1294)
383 PF05729 NACHT: NACHT domain 54.5 5.7 0.00012 39.0 1.1 16 83-98 2-17 (166)
384 PF02534 T4SS-DNA_transf: Type 54.5 8.6 0.00019 45.6 2.7 17 82-98 45-61 (469)
385 PRK04837 ATP-dependent RNA hel 54.4 6.8 0.00015 45.8 1.8 25 72-98 38-62 (423)
386 cd01127 TrwB Bacterial conjuga 54.2 5.5 0.00012 46.4 1.0 18 81-98 42-59 (410)
387 PRK11331 5-methylcytosine-spec 54.1 6.4 0.00014 45.9 1.5 28 331-362 320-347 (459)
388 PRK04328 hypothetical protein; 54.0 8.4 0.00018 41.6 2.3 29 69-97 8-39 (249)
389 PRK04195 replication factor C 53.9 7 0.00015 46.5 1.8 30 69-98 26-56 (482)
390 cd01120 RecA-like_NTPases RecA 53.4 5.4 0.00012 38.9 0.7 15 84-98 2-16 (165)
391 PF07111 HCR: Alpha helical co 53.3 5.2E+02 0.011 31.9 50.1 47 839-885 542-589 (739)
392 TIGR02788 VirB11 P-type DNA tr 52.9 7.4 0.00016 43.4 1.7 28 70-98 134-161 (308)
393 PRK11448 hsdR type I restricti 52.9 6.6 0.00014 51.4 1.5 27 72-99 425-451 (1123)
394 PF13173 AAA_14: AAA domain 52.9 6.3 0.00014 37.6 1.0 16 83-98 4-19 (128)
395 PTZ00361 26 proteosome regulat 52.9 11 0.00023 44.2 3.1 42 83-124 219-274 (438)
396 PRK15424 propionate catabolism 52.8 19 0.00042 43.3 5.3 113 77-212 238-353 (538)
397 PRK15455 PrkA family serine pr 52.8 15 0.00033 44.1 4.2 42 50-96 75-118 (644)
398 KOG2543 Origin recognition com 52.8 6.5 0.00014 44.3 1.2 39 82-143 31-69 (438)
399 cd07664 BAR_SNX2 The Bin/Amphi 52.8 3.2E+02 0.0069 29.2 21.9 45 726-770 21-69 (234)
400 PF13476 AAA_23: AAA domain; P 52.8 6 0.00013 40.3 0.9 17 82-98 20-36 (202)
401 PF08581 Tup_N: Tup N-terminal 52.5 86 0.0019 27.5 7.8 21 600-620 55-75 (79)
402 PF08172 CASP_C: CASP C termin 52.4 75 0.0016 34.3 9.1 45 628-672 80-124 (248)
403 KOG0163 Myosin class VI heavy 52.4 5.5E+02 0.012 31.9 19.1 20 79-98 142-161 (1259)
404 PRK10590 ATP-dependent RNA hel 52.1 8.3 0.00018 45.6 2.1 25 72-98 31-55 (456)
405 PLN03025 replication factor C 52.0 7.4 0.00016 43.6 1.5 17 82-98 35-51 (319)
406 PF00735 Septin: Septin; Inte 51.9 4.7 0.0001 44.4 -0.1 21 78-98 1-21 (281)
407 KOG0736 Peroxisome assembly fa 51.7 16 0.00034 44.8 4.2 23 105-127 784-806 (953)
408 cd01123 Rad51_DMC1_radA Rad51_ 51.5 8.7 0.00019 40.7 1.9 30 69-98 4-36 (235)
409 cd02021 GntK Gluconate kinase 51.5 6.4 0.00014 38.5 0.8 15 84-98 2-16 (150)
410 PRK00440 rfc replication facto 51.4 7.6 0.00016 43.2 1.5 21 78-98 35-55 (319)
411 PHA02244 ATPase-like protein 51.4 8.6 0.00019 43.7 1.9 26 71-98 111-136 (383)
412 KOG0344 ATP-dependent RNA heli 51.3 20 0.00042 42.6 4.7 18 81-98 173-190 (593)
413 TIGR03238 dnd_assoc_3 dnd syst 51.2 11 0.00025 44.1 2.9 27 74-100 19-51 (504)
414 TIGR02237 recomb_radB DNA repa 51.1 8.2 0.00018 40.1 1.6 18 81-98 12-29 (209)
415 COG0606 Predicted ATPase with 51.0 6.2 0.00013 45.9 0.7 28 78-113 197-224 (490)
416 PF05970 PIF1: PIF1-like helic 50.9 5.9 0.00013 45.4 0.5 34 61-98 6-39 (364)
417 PRK09343 prefoldin subunit bet 50.9 2.3E+02 0.0049 27.0 11.9 50 864-913 68-117 (121)
418 PRK11281 hypothetical protein; 50.9 7.4E+02 0.016 32.9 44.5 7 423-429 91-97 (1113)
419 KOG4364 Chromatin assembly fac 50.9 5.1E+02 0.011 31.7 15.8 6 938-943 706-711 (811)
420 TIGR01359 UMP_CMP_kin_fam UMP- 50.6 7.1 0.00015 39.6 1.0 15 84-98 2-16 (183)
421 TIGR00348 hsdR type I site-spe 50.5 9 0.00019 47.6 2.0 29 69-98 247-280 (667)
422 PRK05703 flhF flagellar biosyn 50.4 6.8 0.00015 45.8 0.9 16 83-98 223-238 (424)
423 PF05266 DUF724: Protein of un 50.2 3.1E+02 0.0067 28.3 13.7 58 603-671 125-182 (190)
424 KOG1532 GTPase XAB1, interacts 50.2 11 0.00025 40.5 2.4 28 80-120 18-45 (366)
425 KOG0739 AAA+-type ATPase [Post 50.1 9.3 0.0002 41.6 1.8 80 48-128 130-227 (439)
426 PRK03992 proteasome-activating 49.8 7.1 0.00015 45.1 0.9 18 81-98 165-182 (389)
427 PRK07261 topology modulation p 49.7 7.4 0.00016 39.3 1.0 15 84-98 3-17 (171)
428 TIGR02977 phageshock_pspA phag 49.7 3.4E+02 0.0073 28.6 20.3 108 578-692 31-139 (219)
429 PRK08118 topology modulation p 49.6 7.5 0.00016 39.2 1.0 15 84-98 4-18 (167)
430 PF13851 GAS: Growth-arrest sp 49.5 3.3E+02 0.0071 28.4 27.3 114 618-762 18-132 (201)
431 PRK06995 flhF flagellar biosyn 49.3 7.2 0.00016 46.1 0.9 17 82-98 257-273 (484)
432 cd03274 ABC_SMC4_euk Eukaryoti 49.3 7.4 0.00016 40.9 0.9 16 83-98 27-42 (212)
433 PRK00080 ruvB Holliday junctio 49.2 6.6 0.00014 44.2 0.6 17 82-98 52-68 (328)
434 COG0419 SbcC ATPase involved i 49.2 7.2E+02 0.016 32.3 57.3 12 381-392 205-216 (908)
435 TIGR00614 recQ_fam ATP-depende 49.1 10 0.00022 45.0 2.2 26 71-98 18-43 (470)
436 PRK09841 cryptic autophosphory 49.1 4.7E+02 0.01 33.0 16.9 60 497-556 269-332 (726)
437 cd01850 CDC_Septin CDC/Septin. 49.0 8.1 0.00017 42.4 1.2 21 78-98 1-21 (276)
438 COG4026 Uncharacterized protei 48.9 2.1E+02 0.0045 30.0 10.9 68 867-934 156-228 (290)
439 TIGR01069 mutS2 MutS2 family p 48.9 1.6E+02 0.0035 37.4 12.6 6 315-320 354-359 (771)
440 PRK11519 tyrosine kinase; Prov 48.7 6.5E+02 0.014 31.7 19.2 58 497-554 269-330 (719)
441 PRK00131 aroK shikimate kinase 48.7 7.9 0.00017 38.6 1.0 17 82-98 5-21 (175)
442 KOG0979 Structural maintenance 48.7 7.1E+02 0.015 32.1 30.7 280 526-855 627-918 (1072)
443 cd00820 PEPCK_HprK Phosphoenol 48.6 8.2 0.00018 35.9 1.0 17 82-98 16-32 (107)
444 PRK00409 recombination and DNA 48.5 4E+02 0.0086 34.0 16.0 15 344-358 334-348 (782)
445 TIGR02902 spore_lonB ATP-depen 48.4 7.8 0.00017 46.7 1.0 44 46-98 60-103 (531)
446 TIGR00376 DNA helicase, putati 48.3 9.9 0.00022 46.9 1.9 25 73-98 166-190 (637)
447 PF11932 DUF3450: Protein of u 48.1 3.8E+02 0.0083 28.8 16.7 111 511-655 23-138 (251)
448 PF07798 DUF1640: Protein of u 47.8 3.2E+02 0.0069 27.8 15.9 7 691-697 142-148 (177)
449 PF10236 DAP3: Mitochondrial r 47.7 9.5 0.00021 42.6 1.5 22 77-98 19-40 (309)
450 PF07798 DUF1640: Protein of u 47.7 3.2E+02 0.0069 27.8 16.6 20 603-622 132-151 (177)
451 KOG1803 DNA helicase [Replicat 47.6 9.5 0.00021 45.4 1.5 17 82-98 202-218 (649)
452 PF10498 IFT57: Intra-flagella 47.5 4.8E+02 0.01 29.8 15.7 52 582-633 267-318 (359)
453 PTZ00454 26S protease regulato 47.1 8.4 0.00018 44.6 1.0 51 47-98 141-196 (398)
454 COG3839 MalK ABC-type sugar tr 47.0 8 0.00017 43.5 0.8 15 84-98 32-46 (338)
455 PRK11889 flhF flagellar biosyn 46.9 8.1 0.00018 44.3 0.8 17 82-98 242-258 (436)
456 TIGR00635 ruvB Holliday juncti 46.9 8.9 0.00019 42.5 1.1 16 83-98 32-47 (305)
457 cd00464 SK Shikimate kinase (S 46.6 8.8 0.00019 37.5 0.9 16 83-98 1-16 (154)
458 PRK06851 hypothetical protein; 46.6 15 0.00031 42.0 2.8 28 71-98 20-47 (367)
459 TIGR01650 PD_CobS cobaltochela 46.4 10 0.00022 42.5 1.4 18 81-98 64-81 (327)
460 COG2204 AtoC Response regulato 46.3 46 0.00099 39.2 6.8 106 78-213 161-267 (464)
461 PRK12726 flagellar biosynthesi 46.2 8.8 0.00019 43.8 0.9 17 82-98 207-223 (407)
462 KOG0288 WD40 repeat protein Ti 46.2 5.2E+02 0.011 29.8 15.4 12 501-512 12-23 (459)
463 TIGR03158 cas3_cyano CRISPR-as 46.1 12 0.00027 42.6 2.1 27 72-98 5-31 (357)
464 CHL00181 cbbX CbbX; Provisiona 45.9 8.6 0.00019 42.5 0.8 15 84-98 62-76 (287)
465 PF14282 FlxA: FlxA-like prote 45.9 94 0.002 28.8 7.6 21 608-628 50-70 (106)
466 PRK11634 ATP-dependent RNA hel 45.9 11 0.00024 46.4 1.8 25 72-98 36-60 (629)
467 PRK09361 radB DNA repair and r 45.9 14 0.0003 38.9 2.4 30 69-98 8-40 (225)
468 PF10412 TrwB_AAD_bind: Type I 45.9 8 0.00017 44.6 0.6 17 82-98 16-32 (386)
469 TIGR01313 therm_gnt_kin carboh 45.8 7.4 0.00016 38.7 0.3 15 84-98 1-15 (163)
470 TIGR03744 traC_PFL_4706 conjug 45.8 6.3 0.00014 50.7 -0.3 20 79-98 473-492 (893)
471 PRK06067 flagellar accessory p 45.8 14 0.0003 39.2 2.4 31 68-98 9-42 (234)
472 TIGR02322 phosphon_PhnN phosph 45.8 8.9 0.00019 38.8 0.9 16 83-98 3-18 (179)
473 KOG2991 Splicing regulator [RN 45.6 4.1E+02 0.0089 28.4 25.8 25 792-816 232-256 (330)
474 COG0630 VirB11 Type IV secreto 45.6 8.3 0.00018 43.1 0.6 19 80-98 142-160 (312)
475 PF05266 DUF724: Protein of un 45.6 3.6E+02 0.0079 27.8 15.0 80 537-627 98-177 (190)
476 PF00063 Myosin_head: Myosin h 45.4 8.4 0.00018 48.1 0.7 22 77-98 81-102 (689)
477 cd01428 ADK Adenylate kinase ( 45.4 9.5 0.00021 38.9 1.0 15 84-98 2-16 (194)
478 TIGR01241 FtsH_fam ATP-depende 45.2 8.6 0.00019 46.0 0.7 17 82-98 89-105 (495)
479 PRK14962 DNA polymerase III su 45.2 9.9 0.00021 45.0 1.2 43 47-98 10-53 (472)
480 TIGR02338 gimC_beta prefoldin, 45.2 2.6E+02 0.0056 26.0 11.5 100 795-908 9-108 (110)
481 TIGR02030 BchI-ChlI magnesium 45.1 9.3 0.0002 43.2 0.9 42 48-98 1-42 (337)
482 PF12774 AAA_6: Hydrolytic ATP 45.1 11 0.00025 40.1 1.6 44 81-124 32-83 (231)
483 COG5019 CDC3 Septin family pro 45.0 11 0.00025 42.2 1.6 21 78-98 20-40 (373)
484 TIGR01069 mutS2 MutS2 family p 44.8 3.8E+02 0.0083 34.0 15.0 19 539-557 512-530 (771)
485 PRK12704 phosphodiesterase; Pr 44.5 6.4E+02 0.014 30.4 24.5 26 673-698 121-146 (520)
486 TIGR02880 cbbX_cfxQ probable R 44.5 9.2 0.0002 42.1 0.8 16 83-98 60-75 (284)
487 PRK13897 type IV secretion sys 44.4 21 0.00045 43.7 3.8 17 82-98 159-175 (606)
488 KOG0729 26S proteasome regulat 44.4 11 0.00024 40.2 1.3 47 78-124 206-268 (435)
489 cd01393 recA_like RecA is a b 44.1 16 0.00034 38.5 2.4 30 69-98 4-36 (226)
490 PRK04537 ATP-dependent RNA hel 43.9 12 0.00026 45.6 1.7 25 72-98 39-63 (572)
491 PRK14721 flhF flagellar biosyn 43.8 10 0.00022 44.1 1.0 18 81-98 191-208 (420)
492 PRK13822 conjugal transfer cou 43.8 18 0.0004 44.4 3.2 18 81-98 224-241 (641)
493 KOG0335 ATP-dependent RNA heli 43.7 10 0.00022 44.3 1.0 23 76-100 108-130 (482)
494 PRK14531 adenylate kinase; Pro 43.5 11 0.00023 38.5 1.0 16 83-98 4-19 (183)
495 TIGR02640 gas_vesic_GvpN gas v 43.1 12 0.00025 40.8 1.3 28 69-98 11-38 (262)
496 PF00485 PRK: Phosphoribulokin 42.9 9.8 0.00021 39.2 0.6 15 84-98 2-16 (194)
497 COG4559 ABC-type hemin transpo 42.8 15 0.00033 38.3 2.0 76 65-140 9-95 (259)
498 COG1340 Uncharacterized archae 42.8 5E+02 0.011 28.7 32.1 231 484-767 2-244 (294)
499 TIGR03689 pup_AAA proteasome A 42.7 10 0.00022 45.2 0.8 14 84-97 219-232 (512)
500 PF10226 DUF2216: Uncharacteri 42.6 3E+02 0.0065 28.2 10.8 84 407-556 50-136 (195)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-119 Score=1039.01 Aligned_cols=820 Identities=41% Similarity=0.566 Sum_probs=709.4
Q ss_pred cCCCCCchhhcCCceEEEEeCCCcceeecc-eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCc
Q 002261 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (946)
Q Consensus 16 vRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGK 94 (946)
|||+...|...||+.|+.+.|+.|+|.+++ .+|+||+||++. +.|..+|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 699999999999999999999999999986 689999999864 569999999999999999999999999999999999
Q ss_pred cccccCCCCCCCC-cccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCCCCccccCCCC
Q 002261 95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (946)
Q Consensus 95 T~Tm~g~~~~~~~-~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (946)
|||||+++..... .|+|||++.++|..|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 9999998664444 49999999999999998654 7899999999999999999998643 234
Q ss_pred CceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCC
Q 002261 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (946)
Q Consensus 174 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~ 253 (946)
++.+++ +.|++.+.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||||++++......
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 588888 88999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhccCC
Q 002261 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (946)
Q Consensus 254 ~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLTrlLqdsLgG 333 (946)
...+++||||||||||||.++|+++|+|++||++||.||++|||||++|++.++ ++|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 336789999999999999999999999999999999999999999999999875 679999999999999999999
Q ss_pred CceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 002261 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (946)
Q Consensus 334 ns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~k 413 (946)
|+.|+||+||||+++|+.||++||+||+||++|+|+|+||.|+...+|..|+.+|+.|+.+|....|.....++..+..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999765554455789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-Cccccc------------hhhHhhhhcccccccchhhhh---hc
Q 002261 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVK------------SDGLKRGFQSIDSSDYQMDEA---VS 477 (946)
Q Consensus 414 i~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~~-~~~~~k------------~~eLe~~l~~l~~~~~~l~e~---~~ 477 (946)
+..++..+..+..++.+....|.....+...+... +.+... .....+....+.....+++.. ..
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 99999999999999999998887665555444322 110000 011111100011111111111 10
Q ss_pred -----CCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 478 -----DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (946)
Q Consensus 478 -----~~~~~e~ee~~~e~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k--~~~~~~~~~~e~ki~~Le~ei~~l~kE 550 (946)
.+++.........++++..+.+|..++.+++++|+.||..+++... ......+++|+.++..|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 1122222233456888999999999999999999999999998653 567889999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (946)
Q Consensus 551 r~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~ 630 (946)
++.|..++..+.. ...|+.++|.++++.||.++++|++++..+..|.+.+.+.+.....|..+|..||.++|+|++
T Consensus 525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh-cccccC
Q 002261 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA-RENSVN 709 (946)
Q Consensus 631 ~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~-~~~~~~ 709 (946)
+|++++++|+.|+...+||.+||++++|+.++++.+++..+++|..||+|+++|+.+++++|++++..|+..+ .....+
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~ 680 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLG 680 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988663 222222
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcCCCCCccccccC
Q 002261 710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSL 789 (946)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~~~~~~~~~~~~~~~l 789 (946)
.+| ........|+.+|+++...+.+++..|+.++++|+.+..++..++..-
T Consensus 681 ~~~-------~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~---------------------- 731 (913)
T KOG0244|consen 681 DNG-------ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG---------------------- 731 (913)
T ss_pred hcC-------chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 222 223567999999999999999999999999999999999999887742
Q ss_pred ChhHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 002261 790 SPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWE----- 864 (946)
Q Consensus 790 ~~~~~~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~----- 864 (946)
...|..|+..++....+|.+|++.+..+..+.+..+ +|+++.++.+|++.+.++|+.++..+++...
T Consensus 732 -----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~ 803 (913)
T KOG0244|consen 732 -----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGS 803 (913)
T ss_pred -----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 378899999999999999999999999888776443 9999999999999999999999999998884
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchh
Q 002261 865 --KDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSA 912 (946)
Q Consensus 865 --~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~ 912 (946)
....+.++..++......+|..+.+..+...+..-..+.+...++...
T Consensus 804 re~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~ 853 (913)
T KOG0244|consen 804 REKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVW 853 (913)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555677788888777778888888888877777777777766555443
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-88 Score=796.48 Aligned_cols=360 Identities=41% Similarity=0.655 Sum_probs=316.3
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee--c------ceeEEeceEecCCCCCccccccccchhhHHhhhc
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--G------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ 78 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~--~------~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~ 78 (946)
..+|+|+|||||++.+|....++.+|.+.+....|.+ + .+.|+||+||||.. +|.+||+.+|.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999998888888887765443433 1 46899999999865 5999999999999999999
Q ss_pred CCCeeEEEeccCCCCccccccCCCC-----CCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 79 GYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm~g~~~-----~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
|||||||||||||+||||||.|+.. .+...|||||++.+||+.++.. ..+|+|+|||+|+|||+|+|||+|..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCcc
Confidence 9999999999999999999998643 4567899999999999999884 47999999999999999999999876
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002261 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (946)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (946)
... ......+.+++. +..||++|.|+.+++|+++.|++.+|.+|...|.+++|.||.+|||||+||+|+
T Consensus 205 ~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsIt 273 (1041)
T KOG0243|consen 205 TSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSIT 273 (1041)
T ss_pred ccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEE
Confidence 321 111122233333 678999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 002261 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (946)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~ 313 (946)
|.-.... ..+++-+.+|||+||||||||-..++|+.+.|.+|++.||+||++||+||+||.+..
T Consensus 274 vhike~t-----------~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s----- 337 (1041)
T KOG0243|consen 274 VHIKENT-----------PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS----- 337 (1041)
T ss_pred EEEecCC-----------CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-----
Confidence 9865321 123466789999999999999999999999999999999999999999999999865
Q ss_pred CcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc-hHHHHHHHHHHHHHH
Q 002261 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYLQ 392 (946)
Q Consensus 314 ~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~-~~ei~~Lr~ei~~Lk 392 (946)
+|||||+|||||||||||||.++|+|||||||+..+++||++||.||.||++|+|+|.+|+-.. ...+..|-.+|..|+
T Consensus 338 ~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK 417 (1041)
T KOG0243|consen 338 GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLK 417 (1041)
T ss_pred CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999997543 456788899999999
Q ss_pred HHHH
Q 002261 393 AELC 396 (946)
Q Consensus 393 ~eL~ 396 (946)
..|.
T Consensus 418 ~dl~ 421 (1041)
T KOG0243|consen 418 RDLA 421 (1041)
T ss_pred HHHH
Confidence 9984
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-92 Score=815.15 Aligned_cols=392 Identities=40% Similarity=0.604 Sum_probs=339.2
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec-----ceeEEeceEecCCC------CCccccccccchhhHHh
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGG------SPSSAMFGECVAPLVDG 75 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~-----~~~f~FD~Vf~~~~------s~q~~v~~~~~~~lv~~ 75 (946)
..+|+|+|||||++.+|....+..+|.+.....+|..+ ...|+||++||+.+ .+|..||+.++.|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46899999999999999988777666665555554432 25799999998644 34789999999999999
Q ss_pred hhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHhhcCccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 154 (946)
+|+|||+||||||||||||||||+| +.++.++|||||++++||.+|.... .+..|.|.|||+|||||+|+|||+...
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 9999999999999999999999999 4466889999999999999998753 368899999999999999999998321
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002261 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (946)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v 234 (946)
.+++|++||+|-.|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||++|||||+||+|.+
T Consensus 161 ----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvf 224 (1221)
T KOG0245|consen 161 ----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVF 224 (1221)
T ss_pred ----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEE
Confidence 2578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhcc--CCC
Q 002261 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RRE 312 (946)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~--~~~ 312 (946)
.|..... +..-....+|+|+|||||||||+..+|+.|+|+|||.+||+||++||.||+||++..+ .++
T Consensus 225 tQk~~~~----------~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~k 294 (1221)
T KOG0245|consen 225 TQKKHDQ----------DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKK 294 (1221)
T ss_pred Eeeeccc----------cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCC
Confidence 9976432 1113467899999999999999999999999999999999999999999999998653 334
Q ss_pred CCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHH
Q 002261 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQ 392 (946)
Q Consensus 313 ~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~ei~~Lk 392 (946)
..+||||||.|||||+++|||||+|+|||++||++.||+|||+|||||+|||+|+|+++||.|+....|..|++|+.+|+
T Consensus 295 s~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLk 374 (1221)
T KOG0245|consen 295 SDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLK 374 (1221)
T ss_pred CccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC-----------ChHHHHHHHHHHHHHHHHHHHHHH
Q 002261 393 AELCARAGGA-----------PSDEVQVLKGRIAWLEATNEDLCQ 426 (946)
Q Consensus 393 ~eL~~~~~~~-----------~~~e~q~l~~ki~~Le~e~~~L~~ 426 (946)
..|...+.+. +..++..+.++...-+....+|++
T Consensus 375 sll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~e 419 (1221)
T KOG0245|consen 375 SLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNE 419 (1221)
T ss_pred HHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9985533221 123455555555554444444443
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-92 Score=803.29 Aligned_cols=356 Identities=46% Similarity=0.689 Sum_probs=328.8
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------cceeEEeceEecCCCCCccccccccchhhHHhh
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~ 76 (946)
.+++|+|+||+||+...+...++..++.+.+....+.+ .+++|+||+||++++ +|++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~s-tQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDS-TQDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCC-CHHHHHHHHhHHHHHHH
Confidence 35799999999999999999998888887776665554 346899999998654 59999999999999999
Q ss_pred hcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 156 (946)
|+|||+||||||||||||||||.|+ +....|||||+|.+||..|........|.|+|||+|||||.|+|||+|.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999997 47789999999999999999977666899999999999999999999854
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEe
Q 002261 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (946)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q 236 (946)
.+.+.|+++|..|+||.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 25799999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcc
Q 002261 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (946)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~i 316 (946)
.... .+.......|+|+|||||||||..+|++.|.|++|+.+||+||++||+||++|+++++ .||
T Consensus 222 ~~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred eccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 3221 1223567789999999999999999999999999999999999999999999999875 399
Q ss_pred cCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHH
Q 002261 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (946)
Q Consensus 317 pyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~ei~~Lk~eL~ 396 (946)
||||||||+||||||||||+|+|||||||++++++||++||+||+||+.|+|+|+||.|+....+..|+.+|..|+.+|.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred H
Q 002261 397 A 397 (946)
Q Consensus 397 ~ 397 (946)
.
T Consensus 367 ~ 367 (574)
T KOG4280|consen 367 P 367 (574)
T ss_pred c
Confidence 4
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.9e-86 Score=729.96 Aligned_cols=337 Identities=43% Similarity=0.692 Sum_probs=311.0
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeecc----eeEEeceEecCCCCCccccccccchhhHHhhhcCC
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~----~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~ 80 (946)
++.|+|+|+||+||++..|...|.....-+.++...|.+++ .+|.||+||.|.++ |.+||..++.|+|++||.||
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnat-Qe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNAT-QEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCcc-HHHHHHHHHHHHHHHHhccc
Confidence 46899999999999999998777665555555555666665 89999999988655 99999999999999999999
Q ss_pred CeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCccccccccc
Q 002261 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 160 (946)
|+||||||||||||||||.|...+....|||||++++||.+|.++.....|.|.|||||||+|+|+|||+|.
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~-------- 154 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE-------- 154 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--------
Confidence 999999999999999999997666677899999999999999999888999999999999999999999974
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002261 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (946)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~ 240 (946)
+.++.|++|.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|.+..
T Consensus 155 -----------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e 223 (607)
T KOG0240|consen 155 -----------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE 223 (607)
T ss_pred -----------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc
Confidence 357999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 002261 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (946)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRd 320 (946)
+...++|+|.||||||||++.++|+.|.-+.|+.+||+||.|||+||++|+++.+ .||||||
T Consensus 224 --------------~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYRD 285 (607)
T KOG0240|consen 224 --------------DKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYRD 285 (607)
T ss_pred --------------chhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcchh
Confidence 2567899999999999999999999999999999999999999999999999853 5999999
Q ss_pred CcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchH
Q 002261 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISS 379 (946)
Q Consensus 321 SkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ 379 (946)
|||||||+|||||||+|.+|+|+||+..|..||.+||+|++||+.|+|.+.+|......
T Consensus 286 SKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e 344 (607)
T KOG0240|consen 286 SKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAE 344 (607)
T ss_pred hHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHH
Confidence 99999999999999999999999999999999999999999999999999999865443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.3e-84 Score=767.69 Aligned_cols=354 Identities=41% Similarity=0.619 Sum_probs=306.2
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeecceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEE
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~a 86 (946)
+++|+|+|||||+...| .+.. ++... .+..+.+..+.|+||+||++++ +|++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E--~g~~-iV~~~-s~dsl~I~~qtFtFD~VFdp~a-TQedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGE--EGEM-IVQKM-SNDSLTINGQTFTFDSIADPES-TQEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCcc--CCCe-eEEEc-CCCeEEEeCcEEeCCeeeCCCC-CHHHHHHHHHHHHHHHHhcCCcceeec
Confidence 57999999999999886 3333 33333 3445677889999999999865 599999999999999999999999999
Q ss_pred eccCCCCccccccCCCC-------CCCCcccHHHHHHHHHHHHHhc-----cccceEEEEeehhhhhhHHHHHhhcCccc
Q 002261 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (946)
Q Consensus 87 yGqtgSGKT~Tm~g~~~-------~~~~~Glipr~~~~lF~~i~~~-----~~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 154 (946)
||||||||||||+|+.. .+..+|||||++++||..|... .....|.|+|||+|||||.|||||+|..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999643 2467899999999999998652 2346799999999999999999998632
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002261 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (946)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v 234 (946)
..+.|++++.+|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002261 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (946)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (946)
++..... .+.......|+|+|||||||||.+++++.|.+++|+++||+||++||+||.+|+.....++..
T Consensus 313 es~~k~~----------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSV----------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeeccc----------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 8754321 111234578999999999999999999999999999999999999999999999765444567
Q ss_pred cccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHH
Q 002261 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAE 394 (946)
Q Consensus 315 ~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~ei~~Lk~e 394 (946)
||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|+|++|.... ..+..|+..|..|+.+
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~-~~vn~LrelIr~Lk~E 461 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ-DDVNFLREVIRQLRDE 461 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh-hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998642 3344455555555555
Q ss_pred H
Q 002261 395 L 395 (946)
Q Consensus 395 L 395 (946)
|
T Consensus 462 L 462 (1320)
T PLN03188 462 L 462 (1320)
T ss_pred H
Confidence 5
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-81 Score=702.51 Aligned_cols=361 Identities=42% Similarity=0.632 Sum_probs=323.0
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-----------cceeEEeceEecCCC------CCccccccccc
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-----------~~~~f~FD~Vf~~~~------s~q~~v~~~~~ 69 (946)
+..|+|+|||||++.+|..-...+.|.|..+...+.+ ++++|.||++|++.+ +.|++||+..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4689999999999999987766666666555443332 458999999998654 34789999999
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHh
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DL 148 (946)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... +...|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999884 5569999999999999998753 3578999999999999999999
Q ss_pred hcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEE
Q 002261 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (946)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~ 228 (946)
|+|.. .+..+.+++++--|+||.||+...|+|++++-.+|..|+++|+++.|+||..|||||+
T Consensus 160 LdPk~-----------------ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKG-----------------SSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCC-----------------CcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 99865 2467999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhc
Q 002261 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (946)
Q Consensus 229 if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~ 308 (946)
||.|.|.|.-.. +.++. .-...|+|.|||||||||+.++|+.|.|++||.+||+||++||.||++|++.+
T Consensus 223 VFslvvtQ~l~D----~ktg~------SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLYD----LKTGH------SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEec----cccCc------chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 999999987532 22222 23357999999999999999999999999999999999999999999999865
Q ss_pred cC-CCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHH
Q 002261 309 KR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (946)
Q Consensus 309 ~~-~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~e 387 (946)
.. +++.+||||||.||+||+|+|||||+|+||+||||+++||+||++|||||.|||+|+|..+||.|+....+..||.+
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 43 24679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 002261 388 LKYLQAELCA 397 (946)
Q Consensus 388 i~~Lk~eL~~ 397 (946)
+..|+..|..
T Consensus 373 ve~lr~qL~~ 382 (1714)
T KOG0241|consen 373 VEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHhh
Confidence 9999999954
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-81 Score=742.91 Aligned_cols=348 Identities=45% Similarity=0.689 Sum_probs=304.9
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee----------cceeEEeceEecCCCCCccccccccchhhHHhh
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~----------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~ 76 (946)
...|.|+|||||+++.+...+. .|.....++..+.. ....|.||+||+++++ |.+||+.++.|+|++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGD-RSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLSV 82 (675)
T ss_pred cceeEEEEEeCCCCccccccCC-ccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHHH
Confidence 4689999999999998533332 22222222222111 0378999999998765 8999999999999999
Q ss_pred hcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 156 (946)
|.|||+||||||||||||||||.|. ..+|||||+++.+||+.|.... ...|.|.|||+|||||.|+|||+|..
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC---
Confidence 9999999999999999999999885 4569999999999999999866 78999999999999999999998743
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEe
Q 002261 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (946)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q 236 (946)
+++.|+||+.+|++|+||++.+|.|+++++.+|..|..+|+++.|.+|..|||||+||+|.|.+
T Consensus 156 ----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s 219 (675)
T KOG0242|consen 156 ----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVES 219 (675)
T ss_pred ----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcc
Q 002261 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (946)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~i 316 (946)
..+.. + . ..|+|+|||||||||+.+|++.|.|++||.+||+||++||+||++|+++.. ..||
T Consensus 220 ~~~~~-------------~-~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hi 281 (675)
T KOG0242|consen 220 RGREA-------------S-S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRHI 281 (675)
T ss_pred ccccc-------------c-c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc---cCCC
Confidence 65321 0 1 678999999999999999999999999999999999999999999999854 2399
Q ss_pred cCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH-HHHHHHHHHHHHHH
Q 002261 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM-QKLRQQLKYLQAEL 395 (946)
Q Consensus 317 pyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei-~~Lr~ei~~Lk~eL 395 (946)
||||||||||||++|||||+|+|||||+|+..+++||.+||+||+||++|++++.+|.-.....+ ..++.++..|+.++
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976555443 44457888888888
Q ss_pred HH
Q 002261 396 CA 397 (946)
Q Consensus 396 ~~ 397 (946)
..
T Consensus 362 ~~ 363 (675)
T KOG0242|consen 362 ER 363 (675)
T ss_pred Hh
Confidence 44
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.8e-80 Score=692.21 Aligned_cols=325 Identities=42% Similarity=0.602 Sum_probs=289.9
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec--ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEE
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~a 86 (946)
+|+|+|||||+...|...+...|+.+.++...+..+ .+.|.||+||++++ +|++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNT-NQEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCC-CHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 799999999999999877777888776555444333 37999999999865 589999999999999999999999999
Q ss_pred eccCCCCccccccCCCCC-----CCCcccHHHHHHHHHHHHHhc----cccceEEEEeehhhhhhHHHHHhhcCcccccc
Q 002261 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETL----RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (946)
Q Consensus 87 yGqtgSGKT~Tm~g~~~~-----~~~~Glipr~~~~lF~~i~~~----~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 157 (946)
||||||||||||+|+... ...+|||||++++||..+... .....|.|+|||+|||||+|||||+|..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997643 247899999999999998753 2356899999999999999999997632
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002261 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (946)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~ 237 (946)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999876
Q ss_pred eccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 002261 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (946)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ip 317 (946)
.... .......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+..... ...|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 4321 112456899999999999999999999999999999999999999999999875432 257999
Q ss_pred CCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||.||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.4e-80 Score=688.70 Aligned_cols=322 Identities=47% Similarity=0.693 Sum_probs=292.7
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCccee----------------ecceeEEeceEecCCCCCccccccccchhh
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~----------------~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~l 72 (946)
+|+|+|||||+.+.|...+...||.+.++...+. ...+.|+||+||++++ +|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETS-TQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCC-CHHHHHHHHHHHH
Confidence 5899999999999998889999998765432111 1247899999999865 4999999999999
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 152 (946)
|+++++|||+||||||||||||||||+|+. ..+|||||++++||..+........|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999964 56999999999999999987767899999999999999999999863
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002261 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (946)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i 232 (946)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2568999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 002261 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (946)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~ 312 (946)
+|.+..... +.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 999875321 123567889999999999999999999999999999999999999999999998753 3
Q ss_pred CCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 313 ~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=9.5e-78 Score=673.34 Aligned_cols=326 Identities=36% Similarity=0.590 Sum_probs=287.7
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-----------------cceeEEeceEecCCCCCccccccccchh
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-----------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~ 71 (946)
+|+|+|||||+.+.|...+...|+.+.++. .+.+ ..+.|.||+||++++ +|++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-tq~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNT-TQKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCC-CHHHHHHHHHHH
Confidence 799999999999999877777888765443 2221 246899999999765 599999999999
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcC
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 151 (946)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|.|||+|||||+|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999964 6799999999999999876 999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEE
Q 002261 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (946)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~ 231 (946)
.... .....++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012457999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCC
Q 002261 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (946)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~ 311 (946)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99998653211 00 1112356778999999999999999999999999999999999999999999999865433
Q ss_pred -CCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 312 -~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.4e-77 Score=674.72 Aligned_cols=337 Identities=45% Similarity=0.669 Sum_probs=300.1
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------cceeEEeceEecCCC------CCccccccccchhh
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGG------SPSSAMFGECVAPL 72 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------~~~~f~FD~Vf~~~~------s~q~~v~~~~~~~l 72 (946)
++|+|+|||||+...|...+...|+.+.+....+.. ....|+||+||++.. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999988888888877664333322 236899999998751 45899999999999
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccc-cceEEEEeehhhhhhHHHHHhhcC
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDS 151 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~ 151 (946)
|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|+|||+|||||.|||||++
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 9999999999999999999999999999643 689999999999999987544 578999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEE
Q 002261 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (946)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~ 231 (946)
.. .....+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 158 ~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~ 221 (356)
T cd01365 158 KK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFT 221 (356)
T ss_pred Cc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEE
Confidence 43 12357899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccC-
Q 002261 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR- 310 (946)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~- 310 (946)
|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 222 l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~ 291 (356)
T cd01365 222 IVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAK 291 (356)
T ss_pred EEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 99998653221 1235667899999999999999999999999999999999999999999999976532
Q ss_pred --CCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 002261 311 --REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (946)
Q Consensus 311 --~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN 373 (946)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|.|++|
T Consensus 292 ~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 292 SKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred ccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.1e-76 Score=669.39 Aligned_cols=333 Identities=44% Similarity=0.693 Sum_probs=301.6
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee--------cceeEEeceEecCCCCCccccccccchhhHHhhhcC
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~--------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G 79 (946)
++|+|+|||||+...|...++..++.+.....+|.+ ..+.|+||+||++++ +|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEA-DQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888776666655 357899999999765 59999999999999999999
Q ss_pred CCeeEEEeccCCCCccccccCCCCC--------CCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcC
Q 002261 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~--------~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 151 (946)
||+||||||+|||||||||+|+... ...+|||||++.+||..+... ...|.|+|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 678999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEec--CCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002261 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (946)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i 229 (946)
.. ....++.++++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12467999999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhcc
Q 002261 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (946)
Q Consensus 230 f~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~ 309 (946)
|+|+|.+..... ........|+|+|||||||||..+.++.|.+++|+.+||+||.+|++||.+|+.+.
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999999864321 11234567999999999999999999999999999999999999999999998764
Q ss_pred CCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccc
Q 002261 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (946)
Q Consensus 310 ~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d 375 (946)
.|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|.|++|.+
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999964
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.5e-76 Score=666.36 Aligned_cols=337 Identities=63% Similarity=0.964 Sum_probs=305.7
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec-ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEE
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~-~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~a 86 (946)
++|+|+||+||+...|...++..|+.+.++++++.++ .+.|+||+||++++ +|++||+.++.|+|+++++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPST-SQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCC-CHHHHHHHHHHHHHHHHhCCCccceee
Confidence 5899999999999999988899999999999998887 68999999999765 499999999999999999999999999
Q ss_pred eccCCCCccccccCCCCC---CCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCC
Q 002261 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (946)
Q Consensus 87 yGqtgSGKT~Tm~g~~~~---~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (946)
||+|||||||||+|+... ...+|||||++++||..+........|.|.|||+|||||.|+|||++..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999997542 5679999999999999999876668999999999999999999998743
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002261 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (946)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~ 243 (946)
...+++.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12467999999999999999999999999999999999999999999999999999999999999997653210
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcc
Q 002261 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (946)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkL 323 (946)
.....+.......|+|+|||||||||.+++++.|.+++|+.+||+||.+|++||.+|+.+.+ +..|||||+|||
T Consensus 224 ----~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 ----APMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred ----ccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 00112234567899999999999999999999999999999999999999999999997653 346999999999
Q ss_pred hhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 002261 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (946)
Q Consensus 324 TrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Ik 367 (946)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++|+
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.9e-75 Score=649.84 Aligned_cols=307 Identities=42% Similarity=0.630 Sum_probs=277.7
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-------------cceeEEeceEecCCCCCccccccccchhhHHh
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~ 75 (946)
+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||+++++ |++||+.++.|+|++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~~ 79 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIPH 79 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHHH
Confidence 79999999999999987666666665544 22222 1478999999997654 899999999999999
Q ss_pred hhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 155 (946)
+++|||+||||||||||||||||+|+. .++|||||++++||+.++... ..|.|+|||+|||||.|+|||++
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---- 150 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---- 150 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC----
Confidence 999999999999999999999999864 569999999999999998754 68999999999999999999976
Q ss_pred cccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEE
Q 002261 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (946)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~ 235 (946)
.+++.|++++.++++|.|+++++|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.
T Consensus 151 ----------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~ 214 (322)
T cd01367 151 ----------------RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK 214 (322)
T ss_pred ----------------ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002261 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (946)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~-~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (946)
+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 215 ~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~ 272 (322)
T cd01367 215 NKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-----A 272 (322)
T ss_pred EecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----C
Confidence 7531 3468999999999999998765 578999999999999999999999999764 4
Q ss_pred cccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 315 ~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 273 ~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 HVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred cCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.3e-75 Score=650.72 Aligned_cols=320 Identities=44% Similarity=0.709 Sum_probs=294.7
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec----ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCee
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~----~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~t 83 (946)
.+|+|+|||||+...|...+...|+.+.++ ..|.+. .+.|.||+||++++ +|++||+.++.|+|+.+++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNT-TQEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHHHcCccce
Confidence 589999999999999987788888887655 455554 57999999999865 599999999999999999999999
Q ss_pred EEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCC
Q 002261 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (946)
|||||+|||||||||+|+......+|||||++++||..+........|.|++||+|||+|.|+|||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999887777889999999999999999999864
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002261 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (946)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~ 243 (946)
...+.+++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 246899999999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcc
Q 002261 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (946)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkL 323 (946)
......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+++ .|||||||+|
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1345789999999999999999999999999999999999999999999997652 5999999999
Q ss_pred hhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 324 TrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.1e-75 Score=652.94 Aligned_cols=323 Identities=48% Similarity=0.711 Sum_probs=293.7
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------cceeEEeceEecCCCCCccccccccchhhHHhhhcC
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G 79 (946)
+|+|+|||||+.+.|...++..++.+.+...+|.+ ..+.|.||+||++++ +|++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNS-TQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCc-cHHHHHHHHHHHHHHHHhCC
Confidence 79999999999999988888888887776665554 236799999999765 58999999999999999999
Q ss_pred CCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccc
Q 002261 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 159 (946)
||+||||||+|||||||||+|+......+|||||++++||..+.... ...|.|.|||+|||||+|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 99999999999999999999987767789999999999999998754 37899999999999999999998633
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002261 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (946)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~ 239 (946)
..++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 24689999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 002261 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (946)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyR 319 (946)
.. +.......|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|+.++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 21 11245678999999999999999999999999999999999999999999999754 3599999
Q ss_pred CCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 320 dSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
+||||+||+|+|||||+|+||+||+|+..+++||++||+||+|||+|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.6e-74 Score=639.33 Aligned_cols=308 Identities=39% Similarity=0.620 Sum_probs=278.3
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCc----ceee-------cceeEEeceEecCCCCCccccccccchhhHHhhh
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~----~v~~-------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l 77 (946)
+|+|+|||||+.+.| .+...|+.+...++ .+.+ ..+.|.||+||++++ +|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCE--EDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTEC-TQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccc--cCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCC-CHHHHHHHHHHHHHHHHh
Confidence 589999999999888 34566776654422 2322 247899999999765 599999999999999999
Q ss_pred cCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 157 (946)
+|||+||||||||||||||||+|++ ..+|||||++++||+.+... ...|.|+|||+|||+|.|+|||++.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCC-----
Confidence 9999999999999999999999964 46999999999999988763 3679999999999999999999863
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002261 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (946)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~ 237 (946)
...+.|++++.++++|.|+++++|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 148 --------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 148 --------------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred --------------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 246889999999999999999999999999999999999999999999999999999999999876
Q ss_pred eccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 002261 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (946)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ip 317 (946)
.. .....|+|+|||||||||..++++.|.+++|+.+||+||.+||+||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 32 22578999999999999999999999999999999999999999999998754 5999
Q ss_pred CCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
||||+||+||+|+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.4e-73 Score=636.20 Aligned_cols=317 Identities=41% Similarity=0.674 Sum_probs=285.0
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-c---ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeE
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-G---THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-~---~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti 84 (946)
+|+|+|||||+...|. .+...++.+..+ ..+.+ + ...|.||+||++++ +|++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGES-TNREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCC-CHHHHHHHHHHHHHHHHHCCCceeE
Confidence 6999999999999886 344556666655 34443 2 58999999999765 4899999999999999999999999
Q ss_pred EEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCCC
Q 002261 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (946)
Q Consensus 85 ~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~ 164 (946)
||||+|||||||||+|+. ..+|||||++++||..+.... ...|.|+|||+|||||.|||||+|..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999999864 568999999999999997753 67899999999999999999998743
Q ss_pred CccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCC
Q 002261 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (946)
Q Consensus 165 ~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~~ 244 (946)
.++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 468999999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcch
Q 002261 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (946)
Q Consensus 245 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLT 324 (946)
+.......|+|+|||||||||..+.+ .|.+++|+.+||+||.+|++||.+|+.+.. ..|||||+||||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12356778999999999999999988 899999999999999999999999998752 359999999999
Q ss_pred hhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 325 rlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.6e-73 Score=635.91 Aligned_cols=319 Identities=39% Similarity=0.588 Sum_probs=280.3
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------------cceeEEeceEecCCCCCccccccccchhhH
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv 73 (946)
+|+|+||+||+...+. .++.+.+.+.++.+ ....|+||+||++ ++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~--~~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN--ASQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC--CCHHHHHHHHHHHHH
Confidence 5899999999987442 12233333222111 2368999999987 459999999999999
Q ss_pred HhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 74 ~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
+++|+|||+||||||+|||||||||+|+..+...+|||||++++||..++.. ....|.|+|||+|||||.|||||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999997665678999999999999999874 467899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002261 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (946)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (946)
.. ....+++.|++++.++++|.|+++++|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 002261 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (946)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~ 313 (946)
|.+..... .......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSREA------------GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecCC------------CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 99864321 1246678999999999999999999999999999999999999999999999765 3
Q ss_pred CcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 314 ~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999985
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.8e-72 Score=663.27 Aligned_cols=325 Identities=40% Similarity=0.623 Sum_probs=287.6
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------cceeEEeceEecCCCCCccccccccchhhHHhhh
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l 77 (946)
.|+|+|+|||||+.+.+....+...+ ..+....+.+ ..+.|.||+||+|.++ |++||.. +.|+|.+||
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hcCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHh
Confidence 47999999999999988654222222 2221111211 1235999999998776 9999988 899999999
Q ss_pred cCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 157 (946)
+|||+||||||||||||||||.|+ .+..+|||||++.+||..+......+.|.+.+||+|||||.|+|||++..
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~---- 463 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES---- 463 (670)
T ss_pred cCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----
Confidence 999999999999999999999885 56679999999999999999988899999999999999999999998643
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002261 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (946)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~ 237 (946)
....+.|+.++++.++|.|++.++|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...
T Consensus 464 -------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 464 -------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred -------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 1356899999999999999999999999999999999999999999999999999999999999754
Q ss_pred eccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 002261 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (946)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ip 317 (946)
. ........+.|+|||||||||+.+++++|.|++|+.+||+||++||+||.+|+.. .+|||
T Consensus 531 ~--------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiP 591 (670)
T KOG0239|consen 531 N--------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIP 591 (670)
T ss_pred c--------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCc
Confidence 2 1235677899999999999999999999999999999999999999999999974 35999
Q ss_pred CCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccc
Q 002261 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVV 372 (946)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~v 372 (946)
|||||||+||+|+|||+++|+|+++|||...++.||+++|+||.|++.+...|..
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred ccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999999999999999999999999999999999987754
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.2e-71 Score=623.61 Aligned_cols=321 Identities=42% Similarity=0.668 Sum_probs=288.2
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCC-cceeec-----ceeEEeceEecCCCCCccccccccchhhHHhhhcCC
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~~v~~~-----~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~ 80 (946)
.++|+|+|||||+...+. .....++.+.+.. ..+.+. .+.|+||+||++++ +|++||+. +.|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDA-SQEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCC-CHHHHHHH-HHHHHHHHhCCC
Confidence 378999999999998885 3344566665553 344432 36899999998765 58999997 699999999999
Q ss_pred CeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccc-cceEEEEeehhhhhhHHHHHhhcCcccccccc
Q 002261 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 159 (946)
|+||||||+|||||||||+|+. ..+|||||++++||..+..... ...|.|.+||+|||||.|+|||++..
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 148 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------ 148 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc------
Confidence 9999999999999999999964 6699999999999999988654 67899999999999999999998743
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002261 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (946)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~ 239 (946)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 ----------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~ 218 (329)
T cd01366 149 ----------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL 218 (329)
T ss_pred ----------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC
Confidence 1246799999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 002261 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (946)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyR 319 (946)
. +.....|+|+||||||||+..++++.|.+++|+.+||+||.+|++||.+|+.+. .|||||
T Consensus 219 ~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr 279 (329)
T cd01366 219 Q--------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD-----SHVPYR 279 (329)
T ss_pred C--------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCc
Confidence 2 245678999999999999999999999999999999999999999999998763 599999
Q ss_pred CCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccC
Q 002261 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQN 368 (946)
Q Consensus 320 dSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Ikn 368 (946)
+|+||+||+|+|||||+|+||+||||...+++||++||+||+||++|++
T Consensus 280 ~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 280 NSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred ccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.4e-71 Score=620.40 Aligned_cols=327 Identities=49% Similarity=0.757 Sum_probs=298.7
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCc-ceee-------cceeEEeceEecCCCCCccccccccchhhHHhhhcCC
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~-~v~~-------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~ 80 (946)
+|+|+|||||+...|...+...|+.+.+..+ .+.+ ....|+||+||++++ +|++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATA-SQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCC-ChHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888888998877654 3433 237899999998765 589999999999999999999
Q ss_pred CeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCccccccccc
Q 002261 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 160 (946)
|+||||||+|||||||||+|+ ...+||||+++++||..+........|.|+|||+|||+|.|+|||+|.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999985 456899999999999999887667899999999999999999999863
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002261 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (946)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~ 240 (946)
++++.|++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~ 217 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN 217 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC
Confidence 357999999999999999999999999999999999999999999999999999999999999976321
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 002261 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (946)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRd 320 (946)
........|+|+|||||||||..+.++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 218 ------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 218 ------------SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred ------------CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 12356789999999999999999999999999999999999999999999999753 256999999
Q ss_pred CcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 002261 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (946)
Q Consensus 321 SkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN 373 (946)
|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-70 Score=597.47 Aligned_cols=323 Identities=36% Similarity=0.569 Sum_probs=285.4
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEe------CCCcceee------cceeEEeceEecCCCCCccccccccchhhH
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVT------HGNPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~------~~~~~v~~------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv 73 (946)
+...|.||||=||++.+|.....-++|+|. .++|...+ ..+.|.||++||..++ ++.||..+++|||
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~PlV 284 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKPLV 284 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhHHH
Confidence 456899999999999999876666666552 23343333 3479999999987665 8999999999999
Q ss_pred HhhhcCCCeeEEEeccCCCCccccccCCCCCC---CCcccHHHHHHHHHHHHHhc-cccceEEEEeehhhhhhHHHHHhh
Q 002261 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREG---FQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRDLL 149 (946)
Q Consensus 74 ~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~---~~~Glipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIy~e~v~DLL 149 (946)
..+|+|--+|+||||||||||||||||+|... ...||-..+.+|+|..+... -....+.|+|||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 99999999999999999999999999998743 34699999999999998762 235689999999999999999999
Q ss_pred cCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002261 150 DSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (946)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i 229 (946)
++ +..+.+.||.+..+.|.||++..|.+.++++.+|..|+..|++|.|..|..|||||||
T Consensus 365 ~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAv 424 (676)
T KOG0246|consen 365 ND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAV 424 (676)
T ss_pred cc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccccee
Confidence 75 4579999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccc-cccCCCccchhhhhhhhhhhHHHHHHHHHhhhhc
Q 002261 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERA-KRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (946)
Q Consensus 230 f~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~-~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~ 308 (946)
|+|.+.... .....++|.||||||+||. +.+.++.++-.||..||+||+||..||.+|+.++
T Consensus 425 fQIilr~~~-----------------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk 487 (676)
T KOG0246|consen 425 FQIILRKHG-----------------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 487 (676)
T ss_pred EeeeeecCC-----------------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC
Confidence 999997531 3467899999999999997 4556777788899999999999999999999775
Q ss_pred cCCCCCcccCCCCcchhhhhhccCC-CceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 002261 309 KRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (946)
Q Consensus 309 ~~~~~~~ipyRdSkLTrlLqdsLgG-ns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~ 371 (946)
.|+|||.||||.+|+|||=| ||+|+||+||||...+.+.||||||||+|+|.....+.
T Consensus 488 -----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 488 -----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred -----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 49999999999999999988 99999999999999999999999999999999876554
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-69 Score=603.25 Aligned_cols=334 Identities=36% Similarity=0.574 Sum_probs=291.1
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee------------c---ceeEEeceEecCCCCCccccccccchhh
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI------------G---THSFTFDHVYGNGGSPSSAMFGECVAPL 72 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~------------~---~~~f~FD~Vf~~~~s~q~~v~~~~~~~l 72 (946)
..|.|+||+||+.+. .+...|+.|......+-. + .+.|.|.+||+|..+ |.+||+.|+.|+
T Consensus 31 d~v~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHH
Confidence 379999999999862 334556666544432221 1 257999999998765 999999999999
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc--------------------------
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-------------------------- 126 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-------------------------- 126 (946)
|.+++.|.|..+|+||.|||||||||.|++ ..+||+||+++.||+.|....
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~---~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTP---DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCC---CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999954 458999999999999995410
Q ss_pred --------------------------------------ccceEEEEeehhhhhhHHHHHhhcCcccccccccCCCCCccc
Q 002261 127 --------------------------------------HQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVS 168 (946)
Q Consensus 127 --------------------------------------~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~ 168 (946)
.+..|.|+|||+|||||-|||||.+.+..
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q------------- 250 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ------------- 250 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc-------------
Confidence 12458999999999999999999876421
Q ss_pred cCCCCC-ceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCC
Q 002261 169 ISGRPP-IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247 (946)
Q Consensus 169 ~~~~~~-l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~~~~~ 247 (946)
+.+.. ..+++|.+|..||.|+++|+|+|.+|++.+|..|...|++++|..|..|||||+||+|.|.+....
T Consensus 251 -~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~------- 322 (809)
T KOG0247|consen 251 -GKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS------- 322 (809)
T ss_pred -chhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc-------
Confidence 11222 568899999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcchhhh
Q 002261 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLL 327 (946)
Q Consensus 248 ~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLTrlL 327 (946)
.......+|.|.|||||||||..+|++.|.|++||++||.||++||+||.+|..+++.+...+|||||||||+++
T Consensus 323 -----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlf 397 (809)
T KOG0247|consen 323 -----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLF 397 (809)
T ss_pred -----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHH
Confidence 123677899999999999999999999999999999999999999999999999888777889999999999999
Q ss_pred hhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 002261 328 QDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (946)
Q Consensus 328 qdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~ 374 (946)
+.+|.|..+..||+||+|.+.+|+|+++.|+||..|..|.+.+.++.
T Consensus 398 q~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 398 KNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred HHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccc
Confidence 99999999999999999999999999999999999999998777654
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.3e-69 Score=607.86 Aligned_cols=322 Identities=48% Similarity=0.746 Sum_probs=280.2
Q ss_pred EcCCCCCchhhcCCceEEEEeCC---------CcceeecceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEE
Q 002261 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (946)
Q Consensus 15 RvRP~~~~e~~~~~~~~~~~~~~---------~~~v~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ 85 (946)
||||+...|...+...++.+... ..........|.||+||++++ +|++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDA-TQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTS-THHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999998888777765421 111122347999999999765 49999999999999999999999999
Q ss_pred EeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcccc--ceEEEEeehhhhhhHHHHHhhcCcccccccccCCC
Q 002261 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (946)
Q Consensus 86 ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~--~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (946)
|||+|||||||||+|+ .....+||||+++++||..+...... ..|.|+|||+|||+|.|+|||+|...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 33667999999999999999986554 68999999999999999999997531
Q ss_pred CCccccCCCCCceEEecCCCc-EEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecccc
Q 002261 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (946)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~ 242 (946)
....++.|++++..| ++|.|++++.|.|+++++.+|..|..+|.++.|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 123579999999876 9999999999999999999999999999999999999999999999999999764321
Q ss_pred CCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCC-CccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCC
Q 002261 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (946)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~-~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdS 321 (946)
........|+|+|||||||||..+.++ .|.+++|+..||+||.+|++||.+|+.+ ....|||||+|
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcc
Confidence 000136889999999999999999886 4888999999999999999999999987 23469999999
Q ss_pred cchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 322 kLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
|||+||+|+|||||+|+||+||||+..++++|++||+||+++++|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.1e-68 Score=595.95 Aligned_cols=318 Identities=48% Similarity=0.753 Sum_probs=285.0
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec---------ceeEEeceEecCCCCCccccccccchhhHHhhhcC
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---------~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G 79 (946)
+|+|+|||||+...+ ..+...|+.+.++. .|.+. .+.|.||+||++++ +|++||+.++.|+|++++.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK-TVTLTPPKDGRKAGPKSFTFDHVFDPNS-TQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC-EEEEecCccccCcCceEEECCeEEcCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999998877 44567778777643 33332 38999999999765 48999999999999999999
Q ss_pred CCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccc-cceEEEEeehhhhhhHHHHHhhcCccccccc
Q 002261 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 158 (946)
||+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|++||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999999954 6699999999999999987543 57899999999999999999998742
Q ss_pred ccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeee
Q 002261 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (946)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~ 238 (946)
...++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13679999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccC
Q 002261 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (946)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipy 318 (946)
.... ......|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 4221 1147789999999999999999999999999999999999999999999998652 359999
Q ss_pred CCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 319 RdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
|+||||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6e-62 Score=573.25 Aligned_cols=290 Identities=49% Similarity=0.759 Sum_probs=268.6
Q ss_pred ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHh
Q 002261 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET 124 (946)
Q Consensus 45 ~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~ 124 (946)
...|.||+||++.++ |++||+.++.|+++.++.||||||||||||||||||||.|. ...+||||+++..||+.++.
T Consensus 55 ~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~---~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT---EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC---ccccchHHHHHHHHHHHHHh
Confidence 357999999998765 99999999999999999999999999999999999999885 46799999999999999999
Q ss_pred ccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHH
Q 002261 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAAC 204 (946)
Q Consensus 125 ~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~ 204 (946)
......|.|.|||+|||||+++|||.|.. ..+.++++..++++|.|++++.|.++++++.+
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~-------------------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~ 191 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNE-------------------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDL 191 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcc-------------------ccccccccCCCceEeecceEEecCChHHHHHH
Confidence 87778899999999999999999998754 22678999999999999999999999999999
Q ss_pred HHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccch
Q 002261 205 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRL 284 (946)
Q Consensus 205 l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~ 284 (946)
|..|..+|++++|.+|..|||||+||+|++.+..... .....++|+||||||||++..++..+.|+
T Consensus 192 l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~--------------~~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 192 LRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS--------------GTSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred HHHhhhhcccccchhccccccceEEEEEEEEEeccCc--------------cceecceEEEEeeccccccchhhcccchh
Confidence 9999999999999999999999999999999876532 12223799999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 285 KEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 285 ~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
+||..||+||++||+||++|.+.+ +..|||||+|||||+|+++|||||+|.|||||+|+..++++|++||+||+||+
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak 334 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAK 334 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999753 24699999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccc
Q 002261 365 NIQNKPVVNR 374 (946)
Q Consensus 365 ~Iknkp~vN~ 374 (946)
+|+|+|.+|.
T Consensus 335 ~I~~~~~~~~ 344 (568)
T COG5059 335 SIKNKIQVNS 344 (568)
T ss_pred hcCCcccccC
Confidence 9999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4.3e-49 Score=404.82 Aligned_cols=179 Identities=50% Similarity=0.806 Sum_probs=164.0
Q ss_pred cccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhH
Q 002261 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (946)
Q Consensus 64 v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e 143 (946)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 999988 99999999999999999999999999999864 678999999987
Q ss_pred HHHHhhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCC
Q 002261 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (946)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~S 223 (946)
++.+|..|..+|.++.|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788889999999999999999
Q ss_pred CCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHH
Q 002261 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (946)
Q Consensus 224 SRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~ 303 (946)
||||+||+|+|.+..... ........|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~-----------~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALA-----------SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCC-----------CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999875422 112456789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCC
Q 002261 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (946)
Q Consensus 304 L~~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp 345 (946)
|+.+. .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.92 E-value=5.5e-22 Score=252.02 Aligned_cols=473 Identities=20% Similarity=0.215 Sum_probs=392.1
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 002261 368 NKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQE 447 (946)
Q Consensus 368 nkp~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~ 447 (946)
.+|.+........|.....++..++.++.. .......++.....+..+...|..+|..+...++.+++.....
T Consensus 827 vkPLL~~~~~ee~~~~~~~e~~~l~~~l~~-----~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~-- 899 (1930)
T KOG0161|consen 827 VKPLLKVTKTEEEMRAKEEEIQKLKEELQK-----SESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERL-- 899 (1930)
T ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 456666666778888999999999999855 3445566778888889999999999999999888877665444
Q ss_pred CCccccchhhHhhhhcccccccchhhhhhcCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccc
Q 002261 448 GPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKL--FGDID 525 (946)
Q Consensus 448 ~~~~~~k~~eLe~~l~~l~~~~~~l~e~~~~~~~~e~ee~~~e~e~~~~q~~l~~el~~L~~~Le~kE~~~~~--~~k~~ 525 (946)
..+..+++..+..++.+. .+++...........++..+++++..++++.|..+.+ .+++.
T Consensus 900 ----~~~k~~le~~l~~~~~~~--------------e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~ 961 (1930)
T KOG0161|consen 900 ----RAEKQELEKELKELKERL--------------EEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNA 961 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666654433322 2222233334445566778999999999999988877 45677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN------SDGHTQKMQDGHTLKLKALEAQILELKKKQESQVE 599 (946)
Q Consensus 526 ~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~------~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~ 599 (946)
.+...+.+++.|..+++.+.+|.++++.++..+..+... ......|++..++..+.+++.. |.+++..+.+
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~---le~e~~~r~e 1038 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT---LEREKRIRME 1038 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 888889999999999999999999999999988776543 3457788889999999999988 8999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQ 679 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~ 679 (946)
+++.+++++.+++.+++.+..++.++..| -.+|+++.-.......+++ +.+...+.++
T Consensus 1039 ~Ek~~rkle~el~~~~e~~~~~~~~~~el---------------------~~~l~kke~El~~l~~k~e-~e~~~~~~l~ 1096 (1930)
T KOG0161|consen 1039 LEKAKRKLEGELKDLQESIEELKKQKEEL---------------------DNQLKKKESELSQLQSKLE-DEQAEVAQLQ 1096 (1930)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 99999999999999999999999999999 7777777777777777887 7778889999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHH
Q 002261 680 RKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALAD 758 (946)
Q Consensus 680 rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~ 758 (946)
+++.+..+.+++|.+.|+..+ ..+.++++.++.|.+|++.+. ++.+....+..+++.+.+.+.
T Consensus 1097 k~i~eL~~~i~el~e~le~er----------------~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~ 1160 (1930)
T KOG0161|consen 1097 KQIKELEARIKELEEELEAER----------------ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA 1160 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999544 345567899999999999999 899999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCC---CcCCCCCccccccCChhHHHH---------------------------------------
Q 002261 759 ELTILKQVDQLSLNGHS---PQRGKNGHSRLSSLSPNARME--------------------------------------- 796 (946)
Q Consensus 759 el~~l~~~~e~~~~~~~---~~~~~~~~~~~~~l~~~~~~~--------------------------------------- 796 (946)
++..|++.++.+...++ ...++.+.+.+.++..++.+.
T Consensus 1161 e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~ 1240 (1930)
T KOG0161|consen 1161 EVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD 1240 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 99999999998888777 455566666666665444433
Q ss_pred -----HHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002261 797 -----RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKE 871 (946)
Q Consensus 797 -----qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e 871 (946)
++.+|+.++.+...++.++..+.+....+.. +..+.+++++..+..+.+.......++.+...++.+
T Consensus 1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~--------~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~ 1312 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENE--------ELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEE 1312 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777766 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcC
Q 002261 872 IKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASV 914 (946)
Q Consensus 872 ~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (946)
..+....+...+++++.+...|.+++++..++++.+.+.+++.
T Consensus 1313 e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~ 1355 (1930)
T KOG0161|consen 1313 ETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKA 1355 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999984
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.14 E-value=1.2e-05 Score=104.89 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=25.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 859 RFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQA 903 (946)
Q Consensus 859 ~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~ 903 (946)
...+.+....+.+....+.+++...|.++.++.+|+..+.+.+.+
T Consensus 1497 ~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1497 SQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555666666666666666665553
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.14 E-value=7e-12 Score=155.95 Aligned_cols=240 Identities=20% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHH
Q 002261 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWL 729 (946)
Q Consensus 650 ~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (946)
-.+|++++........+++ +.+.....|+|++.|+.+.+.+|++.|+ +++.++.++++.++.|
T Consensus 10 ~~~l~kke~El~~~~~~~e-~e~~~~~~l~k~~kelq~~i~el~eeLe----------------~Er~~R~kaek~r~dL 72 (859)
T PF01576_consen 10 EEQLKKKEEELSQLNSKLE-DEQALRAQLQKKIKELQARIEELEEELE----------------SERQARAKAEKQRRDL 72 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 5678888888888888999 8899999999999999999999999999 6777888899999999
Q ss_pred HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC---CcCCCCCccccccCChhHHHH---------
Q 002261 730 EHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHS---PQRGKNGHSRLSSLSPNARME--------- 796 (946)
Q Consensus 730 ~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~~---~~~~~~~~~~~~~l~~~~~~~--------- 796 (946)
..||+.+. .+++..+....+++.+++++.+|..|++.++.....|+ ...+++|.+.+.+|..++.+.
T Consensus 73 ~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK 152 (859)
T PF01576_consen 73 SEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEK 152 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 89999999999999999999999999999998888777 566788999999888776654
Q ss_pred -----------------------------------HHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccH
Q 002261 797 -----------------------------------RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFM 841 (946)
Q Consensus 797 -----------------------------------qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl 841 (946)
+|.+|..++.+..+.+.++...+..+..++. +..+.+
T Consensus 153 ~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~--------eL~~qL 224 (859)
T PF01576_consen 153 EKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENS--------ELTRQL 224 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 8888888888888888888888888888877 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcC
Q 002261 842 GDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASV 914 (946)
Q Consensus 842 ~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (946)
.++...+..+.........++.+.+..|.+.......|...+++++.++..|..++++..++...+.++++++
T Consensus 225 ee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~ 297 (859)
T PF01576_consen 225 EEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKL 297 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=98.75 E-value=0.0011 Score=84.76 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=25.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 862 LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALA 909 (946)
Q Consensus 862 l~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~ 909 (946)
+.+...+|.+....+..+...+..++....++.+++.+..+.+..+.+
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~ 641 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA 641 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555566666666665555543
No 34
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.62 E-value=0.00062 Score=83.74 Aligned_cols=133 Identities=14% Similarity=-0.036 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhc---cccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002261 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVG---RGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKE 871 (946)
Q Consensus 795 ~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~---~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e 871 (946)
...|..|-++.......+..+..++.+..+-+++... ...|...++..........|..++..+..+-.-.+.+|+
T Consensus 702 ~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs- 780 (1317)
T KOG0612|consen 702 MKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK- 780 (1317)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-
Confidence 3455555555555555666666666666665554322 356999999999999999999999999988888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcCcchhhhhHHHHHHHhhcCC
Q 002261 872 IKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASVRFSAQHFMFTWLLILHTAP 933 (946)
Q Consensus 872 ~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (946)
...+..+. +.+|.+...+...+.+....+..-..+..+...+.. +++.++++...++
T Consensus 781 sq~~~~~t----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~-~~~k~lq~~leae 837 (1317)
T KOG0612|consen 781 SQEQEVNT----KMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAW-GQMKELQDQLEAE 837 (1317)
T ss_pred hHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch-hhhHHHHHHHHHH
Confidence 54444443 667777777777777776667766667777654443 5666666544443
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.60 E-value=0.0078 Score=77.15 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=11.8
Q ss_pred EEeccCCCCccccc
Q 002261 85 LAYGQTGSGKTYTM 98 (946)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (946)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999998876
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.55 E-value=0.00012 Score=89.81 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=120.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 002261 491 WEHALWQNTMDKELNELNKRLEQKESEMKLF-----------GDIDTEALRHHFGKKIMELEEEKRIVQQERDRL----- 554 (946)
Q Consensus 491 ~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~-----------~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L----- 554 (946)
.++......++.++..|...++.+..++.++ .....+++.-+|+.++..++++...+..|...+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~ 698 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDK 698 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4444455555666655555544443333221 111222466677777877888877777776666
Q ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 555 LAEIENLAANSDGHTQKMQDGHTLKLKALEAQIL----ELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (946)
Q Consensus 555 ~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~----~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~ 630 (946)
+.++..+....+ ..+-.+++.+..+..++.++. +++..+....++.+.+......+.+|+..+++...++..+.+
T Consensus 699 e~~~~e~~~~ls-eek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~ 777 (1317)
T KOG0612|consen 699 EAQMKEIESKLS-EEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQR 777 (1317)
T ss_pred HHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 122222221111 112223334445666777777 445666667888889999999999999999999999999988
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhccc
Q 002261 631 KIKQ---EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAREN 706 (946)
Q Consensus 631 ~~k~---e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~ 706 (946)
.++. +... +..+.+..+++..|..-.++.+.+...+...+. .+...++.+++.|++.+++++.+
T Consensus 778 eLssq~~~~~t-~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~-----------~~~~~~k~lq~~leae~~~~~~~ 844 (1317)
T KOG0612|consen 778 ELKSQEQEVNT-KMLEKQLKKLLDELAELKKQLEEENAQLRGLNR-----------SAWGQMKELQDQLEAEQCFSSLM 844 (1317)
T ss_pred HhhhHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------cchhhhHHHHHHHHHHHHHHHHH
Confidence 8882 2222 444455555544444333344444444443222 56677888999999888776544
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=0.0096 Score=79.16 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHH
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~ 576 (946)
...+..++..+.++|+.++..+...... ..+.+|+.++..++.+.+.+...+..+. .-.+..
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~~~~~----------~s~~ele~ei~~~~~el~~l~~~~e~l~--------~e~e~~ 855 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDLD----------RTVQQVNQEKQEKQHELDTVVSKIELNR--------KLIQDQ 855 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc----------CCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 3455677778888888777766543210 1344555555555555555544443322 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002261 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 577 ~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
...+..|+..+..++........-...+.+++.++..|..++..+...
T Consensus 856 ~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 856 QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444445555555555555555544443
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.50 E-value=0.00034 Score=78.25 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 525 DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQK 604 (946)
Q Consensus 525 ~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k 604 (946)
.....+..|+..|.+|...+..+..++..+..++.++.....+...|+..+. .....++.++..|++.... ....+
T Consensus 44 ~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~-~~~~~le~el~~lrk~ld~---~~~~r 119 (312)
T PF00038_consen 44 EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL-AERKDLEEELESLRKDLDE---ETLAR 119 (312)
T ss_dssp --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhh---hhhhH
Confidence 3456788999999999999999999999999999988766666667776664 6678888888888855443 67777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
..++.++..|+++|..++..+.+-
T Consensus 120 ~~le~~i~~L~eEl~fl~~~heeE 143 (312)
T PF00038_consen 120 VDLENQIQSLKEELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhh
Confidence 788888999999998888876654
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=0.018 Score=76.68 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhHHHHHH
Q 002261 796 ERIASLENMLNMSSKALVEMASQLSEAEERE 826 (946)
Q Consensus 796 ~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~ 826 (946)
.+|.+++.++......+.++...+.....+.
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i 1000 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDM 1000 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666556655555555544443
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.44 E-value=0.0048 Score=71.84 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002261 576 HTLKLKALEAQILELKKKQE 595 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~~~~ 595 (946)
...++.+||.+|..|.++..
T Consensus 218 ~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677788888777776653
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=98.44 E-value=0.019 Score=73.73 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.9
Q ss_pred EEeccCCCCccccc
Q 002261 85 LAYGQTGSGKTYTM 98 (946)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (946)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 37899999999776
No 42
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.41 E-value=0.011 Score=77.61 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhH
Q 002261 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (946)
Q Consensus 496 ~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~ 575 (946)
....+...+..++..|+..+.....+++.+.+.+...+ +++.++..++..++.+++.|...+.++....+....+++..
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~-~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~ 392 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARV-DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEA 392 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666665655555443 55677777777888888888887777766555566666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 576 HTLKLKALEAQILELK 591 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk 591 (946)
+...+..++.++..++
T Consensus 393 ~~~~~~~~~~~~~~~~ 408 (1201)
T PF12128_consen 393 FNRQQERLQAQQDEIR 408 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655444
No 43
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.39 E-value=0.029 Score=73.29 Aligned_cols=266 Identities=18% Similarity=0.209 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhc--c
Q 002261 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAR--E 705 (946)
Q Consensus 635 e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~-------~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~--~ 705 (946)
...+++..-....-++..|++.-...+..+..+.. .-..+...+..+++....+++=|-++++....... .
T Consensus 1061 ~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n 1140 (1822)
T KOG4674|consen 1061 KLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSN 1140 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33444444455555666666666555555554433 33456788889999999999999999986443221 1
Q ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC--CCcCCCCC
Q 002261 706 NSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGH--SPQRGKNG 782 (946)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~--~~~~~~~~ 782 (946)
.|+ +..+ ...--.+...|.+|.+++. .+.=+......+...-+.++..+..|...+....... .+.-...+
T Consensus 1141 ~S~-----~~~g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~ 1214 (1822)
T KOG4674|consen 1141 LSA-----MLLG-LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEH 1214 (1822)
T ss_pred ccc-----cccc-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 111 2222 2223467899999999987 5555566777777777777777777765432221100 00000001
Q ss_pred c---cccccCC---h---------hHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhh--------hccccccc-c
Q 002261 783 H---SRLSSLS---P---------NARMERIASLENMLNMSSKALVEMASQLSEAEERERAL--------VGRGRWNH-L 838 (946)
Q Consensus 783 ~---~~~~~l~---~---------~~~~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~--------~~~~~w~~-~ 838 (946)
. .-+..|. + ......|.+|...+....-.+.-|+..+.++..+.... .-.-+|.. .
T Consensus 1215 ~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1215 KEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN 1294 (1822)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011111 0 00111444444444444433333333333332222110 01236743 3
Q ss_pred ccHHHH-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 839 RFMGDA-----KNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLV----ALLKQSEAQRKELVKQQRMREQAVTI 906 (946)
Q Consensus 839 ~sl~ea-----k~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~----~~~r~~e~~~~~l~~~~~~~~~~~~~ 906 (946)
..|-+. ..-+.+|...+..+...+..++..+.++...+..+. ..+..+....+.+..++.....+...
T Consensus 1295 q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~r 1371 (1822)
T KOG4674|consen 1295 QDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTR 1371 (1822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 566677777777777777777777777777776666 33333444444444444444444333
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.21 E-value=0.028 Score=65.72 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002261 726 QKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLS 770 (946)
Q Consensus 726 ~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~ 770 (946)
-....+||..+. .+.-+..+-+.+.+++..|...+..|..+++..
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555544 445556677778888888888888877765543
No 45
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.19 E-value=0.072 Score=69.75 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---cchhhhhhhHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANS---DGHTQKMQDGHT---LKLKALEAQILELKKKQES----QVELLKQK 604 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~---~~~~~Kl~~~~~---~kl~~lE~~~~~Lk~~~~~----~~~l~k~k 604 (946)
+++..|++.+..+..|.+.|..+..++...- ....+.+.+++. .++..++.++..||++..- ..+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777655554331 123335555543 3588889999999887665 45566666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE 684 (946)
.++..+...|+.-+..|+.++..+..---+.-.++...-..+.+++..|+++.......++.+......|-.-++..+++
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77777778888888888887777755555666788888889999999999999999999999999999998889999888
Q ss_pred HHHHHHHHHHHHH
Q 002261 685 AAIATKRLKELLE 697 (946)
Q Consensus 685 ~~a~~k~Lke~le 697 (946)
...-+..+...+.
T Consensus 849 ~~~~~~~~~~~l~ 861 (1822)
T KOG4674|consen 849 LESELKSLLTSLD 861 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777664
No 46
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.17 E-value=3.6e-08 Score=117.64 Aligned_cols=256 Identities=23% Similarity=0.272 Sum_probs=153.3
Q ss_pred CCCCCCCceEEEEEcCCCCCchh--h-------cCCceEEEEeCCC-cceeecceeEEeceEecCCCCCccccccccchh
Q 002261 2 DTASENCSVKVAVHVRPLIGDER--A-------QGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (946)
Q Consensus 2 ~~~~~~~~v~V~vRvRP~~~~e~--~-------~~~~~~~~~~~~~-~~v~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~ 71 (946)
+..++.+.++|+|+|+|.....- . .....-..+..+. ..+...-..|.||.+|.+... ...++. ....
T Consensus 299 ~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~-~~~~ 376 (568)
T COG5059 299 DSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFR-EQSQ 376 (568)
T ss_pred HhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHH-HHHh
Confidence 44567789999999999884321 0 0000000111111 122233468999999976543 444443 2556
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccc-cceEEEEeehhhhhhHHHHHhhc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~ 150 (946)
+++.-+.| +++||++++|+++|| .....++.+-.+...|..+..... .+.+...+-++++|-....++..
T Consensus 377 ~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (568)
T COG5059 377 LSQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLRE 447 (568)
T ss_pred hhhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777 899999999999999 334456666676888887765432 34455556667777333333333
Q ss_pred CcccccccccCCCCCccccCCCCCceEEecCC-CcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002261 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSN-GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (946)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i 229 (946)
...... .-.+..... ....+.-++.. ... .............+..+.+..|..++++|.+
T Consensus 448 e~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 508 (568)
T COG5059 448 EELSKK-----------------KTKIHKLNKLRHDLSSLLSSI-PEE-TSDRVESEKASKLRSSASTKLNLRSSRSHSK 508 (568)
T ss_pred HhcCCh-----------------HHHHHHHHHHHHHHHHhhhhc-chh-hhhhhhhhhhccchhhcccchhhhhcccchh
Confidence 211100 000000000 00000000000 000 1111111155677888999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhh
Q 002261 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (946)
Q Consensus 230 f~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~ 305 (946)
|+.......... ... + ++.|||||+||. ...+-|.++++..++|++|..+|.+|.++.
T Consensus 509 ~~~~~~~~~~~~--------------~~~-~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 509 FRDHLNGSNSST--------------KEL-S--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhcccchhhhh--------------HHH-H--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 987664321110 111 1 799999999999 889999999999999999999999998764
No 47
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.17 E-value=3.7e-07 Score=114.18 Aligned_cols=190 Identities=27% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccccchhhHhhhhcccccccchhhhhhcCCCCchHHH
Q 002261 407 VQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEE 486 (946)
Q Consensus 407 ~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~~~~~~~k~~eLe~~l~~l~~~~~~l~e~~~~~~~~e~ee 486 (946)
+..+...+..|+..+..|..+|..++...+..++...++ ...+.+|...|....
T Consensus 34 ~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL------~~ELe~l~~~Lee~~-------------------- 87 (859)
T PF01576_consen 34 RAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDL------SEELEELKERLEEAG-------------------- 87 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhh--------------------
Confidence 344556666677777777777777666655555443333 222333333331110
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 002261 487 VAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRI-------VQQERDRLLAEIE 559 (946)
Q Consensus 487 ~~~e~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~-------l~kEr~~L~~~l~ 559 (946)
...........+-+.++..|.++|+.--..... ....+++.|.+.+.+|..++.. +++++..|..++.
T Consensus 88 -~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~----~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~ 162 (859)
T PF01576_consen 88 -GATQAQIELNKKREAELAKLRRDLEEANLQHEA----TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELD 162 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000111223344556677777776543222211 1235556665555555555554 4455555555555
Q ss_pred hhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 560 NLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES----QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 560 ~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~----~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
.+.... +...|-+...+++.+.+|.++.+|+.+..+ ..++...+.++..++..|...+.+...+...|
T Consensus 163 dL~~~l-~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 163 DLQAQL-DSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHH-HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554433 355666777788889999998888765444 44455556666666666666666665554444
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.17 E-value=0.0071 Score=70.51 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 859 RFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVT 905 (946)
Q Consensus 859 ~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~ 905 (946)
...|.+++.++..+.++...+..++..+-.=+..|..++.-|...+.
T Consensus 341 e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 341 EQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 36778888888888888888877776655555556666666655443
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.15 E-value=0.086 Score=69.83 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
+++-+||+|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 3456799999999988
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.13 E-value=0.051 Score=71.97 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.0
Q ss_pred EEeccCCCCccccc
Q 002261 85 LAYGQTGSGKTYTM 98 (946)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (946)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44799999999887
No 51
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.13 E-value=0.054 Score=65.96 Aligned_cols=108 Identities=24% Similarity=0.407 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002261 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (946)
Q Consensus 532 ~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~ 611 (946)
.|.+++.+|++..+-|..++.-|.++++.+....+. ..+|.+|-.|+++... |.....-...++
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~-------------~tleseiiqlkqkl~d---m~~erdtdr~kt 324 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-------------ATLESEIIQLKQKLDD---MRSERDTDRHKT 324 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-------------CChHHHHHHHHHHHHH---HHHhhhhHHHHH
Confidence 488999999999999999999999998877543321 2344554445544333 333344445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002261 612 KRLQAEIQSIKAQKVQLQNKIKQEA---EQFRQWKASREKELLKLKK 655 (946)
Q Consensus 612 ~~L~~ei~~lk~~kv~L~~~~k~e~---~~~r~~~~~~~kE~~~Lkk 655 (946)
..|+.|+..|.-++.+|--+|--.- +--........+|..+|..
T Consensus 325 eeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 325 EELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS 371 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh
Confidence 7888888888888887766655221 1223344455566666655
No 52
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.12 E-value=0.071 Score=70.57 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 002261 924 TWLLILH 930 (946)
Q Consensus 924 ~~~~~~~ 930 (946)
.++.||.
T Consensus 562 ~~i~~l~ 568 (1164)
T TIGR02169 562 EAIELLK 568 (1164)
T ss_pred HHHHHHH
Confidence 4444544
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.03 E-value=0.059 Score=62.88 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002261 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (946)
Q Consensus 526 ~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~ 563 (946)
...++..|-.++..||.++..+-+|||.|..++.++..
T Consensus 400 ~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 400 VSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999988753
No 54
>PRK03918 chromosome segregation protein; Provisional
Probab=97.96 E-value=0.16 Score=65.37 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 532 HFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 532 ~~e~ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
.|.+.+..|+.++..++.+...+...+..
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 332 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKE 332 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554443
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.96 E-value=0.2 Score=66.46 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=17.7
Q ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 727 KWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILK 764 (946)
Q Consensus 727 ~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~ 764 (946)
.++..+++.+. .+.++...+..+......+..++..+.
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444 444444444444444444444444433
No 56
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.94 E-value=0.08 Score=69.69 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=22.1
Q ss_pred ccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 65 FGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 65 ~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|...+.|++-.+..|+|+-| ||.||||+-.+
T Consensus 11 FKSF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~ 41 (1163)
T COG1196 11 FKSFADPTEINFSPGFTAIV---GPNGSGKSNIV 41 (1163)
T ss_pred cccCCCCeeeecCCCCeEEE---CCCCCchHHHH
Confidence 33444466666777888755 99999998766
No 57
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.13 Score=62.66 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQILELKK----KQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (946)
Q Consensus 578 ~kl~~lE~~~~~Lk~----~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~L 653 (946)
..+.+|+..+..|+. ......++.+.|-+++-+++.|+.+|..-..++.... ..+..+
T Consensus 272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l------------------~~l~~~ 333 (1200)
T KOG0964|consen 272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL------------------HVLQKV 333 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH------------------HHHHHH
Confidence 345666666665543 2233455667777888888888888877776665542 233344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHH
Q 002261 654 KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHEL 733 (946)
Q Consensus 654 kk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~El 733 (946)
+.+-.+.+.++.+.+-.++.+.---.+-..-...+..+.++.+..+ +..+.....+....|+..|+
T Consensus 334 ~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq--------------gr~sqFssk~eRDkwir~ei 399 (1200)
T KOG0964|consen 334 KDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ--------------GRYSQFSSKEERDKWIRSEI 399 (1200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--------------ccccccCcHHHHHHHHHHHH
Confidence 4444445555555554444332211122222233334455555431 11223345578899999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 734 EVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 734 e~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
+.+.+ .+....+....+..++..++.
T Consensus 400 ~~l~~------~i~~~ke~e~~lq~e~~~~e~ 425 (1200)
T KOG0964|consen 400 EKLKR------GINDTKEQENILQKEIEDLES 425 (1200)
T ss_pred HHHHH------HHhhhhhHHHHHHHHHHHHHH
Confidence 88774 223333344444444444443
No 58
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.87 E-value=0.15 Score=62.28 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCcchhhhhhhHH------------HHHHHHHHH-HHHHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAA------NSDGHTQKMQDGH------------TLKLKALEA-QILELKKKQE 595 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~------~~~~~~~Kl~~~~------------~~kl~~lE~-~~~~Lk~~~~ 595 (946)
.++.+|..++..|+.....|...+.-+.. ..+.......+.. +.++..|+. +-+++...-.
T Consensus 322 ~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~S 401 (1195)
T KOG4643|consen 322 HKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELIS 401 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 56667777777777666666554433221 0111111111111 122223321 1124445555
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 596 ~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
.+-.|.+.+.+++.++..|.+.|.+|.+++++|
T Consensus 402 K~leleke~KnLs~k~e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 402 KHLELEKEHKNLSKKHEILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 577788888999999999999999999999887
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.84 E-value=0.15 Score=61.42 Aligned_cols=43 Identities=40% Similarity=0.441 Sum_probs=29.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002261 652 KLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (946)
Q Consensus 652 ~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~ 698 (946)
.|-|+..+...++..|. +++-.|+|+++++++.+-.|||+.++
T Consensus 400 K~~kelE~k~sE~~eL~----r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELR----RQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444 45567889999999999999999985
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.80 E-value=0.16 Score=60.34 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ 634 (946)
Q Consensus 581 ~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~ 634 (946)
++++....+|+-+ ...|.+.+...+.-++.++++++.+++.+.+-+...-+
T Consensus 266 k~ieE~m~qlk~k---ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseq 316 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAK---NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQ 316 (1265)
T ss_pred HHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 3444443344433 44577777888888888888888888887776554443
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.77 E-value=0.37 Score=63.64 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=14.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 858 TRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELV 894 (946)
Q Consensus 858 ~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~ 894 (946)
....+.+.+..+..+...+..+...++..+.....|.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 494 (1163)
T COG1196 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLE 494 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444433333333333
No 62
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.74 E-value=0.13 Score=57.50 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002261 726 QKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQ 768 (946)
Q Consensus 726 ~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e 768 (946)
..-++.|+..+. .+......|+.|+..+-+|..|+..-++=++
T Consensus 264 i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 264 IAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 334444555444 5666677889999999999999887665443
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.62 E-value=0.082 Score=61.90 Aligned_cols=135 Identities=22% Similarity=0.300 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHH
Q 002261 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLK 581 (946)
Q Consensus 502 ~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~ 581 (946)
++|++||..|.. |=+++..||.+...|+.+.+.|..-... ....++.-|+.-+.
T Consensus 42 ~El~~LNDRLA~-------------------YIekVR~LEaqN~~L~~di~~lr~~~~~-------~ts~ik~~ye~El~ 95 (546)
T KOG0977|consen 42 KELQELNDRLAV-------------------YIEKVRFLEAQNRKLEHDINLLRGVVGR-------ETSGIKAKYEAELA 95 (546)
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHhhccC-------CCcchhHHhhhhHH
Confidence 567777766554 3378888888888888888777654332 23445555533332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 002261 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW---KASREKELLKLKKEGR 658 (946)
Q Consensus 582 ~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~---~~~~~kE~~~Lkk~~r 658 (946)
. +++. ..+..+-+.+++.++..|..|+.+++..-.+..+.....-++.+.| -...+-|++.++..-+
T Consensus 96 ~-------ar~~---l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 96 T-------ARKL---LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred H-------HHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 2 3332 2235555666777777777777777766555555444333333322 2344556666666666
Q ss_pred hhHHHHHHHHHHHH
Q 002261 659 KNEFERHKLEALNQ 672 (946)
Q Consensus 659 k~~~e~~kle~~~~ 672 (946)
..+.++.+|..+..
T Consensus 166 ~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 166 ALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666555554433
No 64
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.59 E-value=0.41 Score=59.22 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 407 VQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (946)
Q Consensus 407 ~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee 440 (946)
+......+..|..+++.+..++...+..+..+..
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~ 142 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQL 142 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666777777777666666554443
No 65
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.59 E-value=0.41 Score=59.19 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcCCCCCccccccCChhHHHHHHHHHHHHhhhcHHHHHHHHH
Q 002261 738 NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMAS 817 (946)
Q Consensus 738 ~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~Le~~~~~~~~~l~~l~~ 817 (946)
.+......++.+.++...+..++.+++...+.. ...|..|+.++.....++.+-..
T Consensus 358 ~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~------------------------e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 358 QLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK------------------------ERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777888888888888777654331 24667777777777777766666
Q ss_pred HhhHHHHHHHhhhcccc-ccccccHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 818 QLSEAEERERALVGRGR-WNHLRFMGDAKNLLQYMFNVAAETRFQLW-EKDTEIKEIKEQLNDLVALLKQSEAQRKELVK 895 (946)
Q Consensus 818 ~~~e~~~~~~~~~~~~~-w~~~~sl~eak~~l~~l~~~~~~~~~ql~-~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~ 895 (946)
.+..+.+++.+....+. =....+|++|.....++...+...+.... ...+++...+..+..+...+..++.+..+-..
T Consensus 414 ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~ 493 (775)
T PF10174_consen 414 QLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKEL 493 (775)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66666666653111111 13446677777777777766654443222 23344444444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 002261 896 QQRMREQAVTIA 907 (946)
Q Consensus 896 ~~~~~~~~~~~~ 907 (946)
++....+.+..+
T Consensus 494 ~l~~~kee~s~l 505 (775)
T PF10174_consen 494 QLEDAKEEASKL 505 (775)
T ss_pred HHHHhhhHHHHH
Confidence 444444444443
No 66
>PRK11637 AmiB activator; Provisional
Probab=97.47 E-value=0.1 Score=61.16 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ---EAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~---e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
+.++...+..++.+...+...+.+++.++..|.....+ ....++........++.+|+....+....|.+++
T Consensus 179 ~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 179 REELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666555543 4455555555555566666665555555555544
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.47 E-value=0.057 Score=66.17 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCC
Q 002261 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVL-QRKTEEAAIATKRLKELLEARKSSARENSVNSTG 712 (946)
Q Consensus 634 ~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl-~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~ 712 (946)
+-.+..|..+.+++.|+-+|+.+.+..+.++..|+.+-+.- ... +..-.|+++++..|.-+-|+ +....
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l-r~~~~e~~~~~e~L~~aL~amqdk---~~~LE------ 607 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL-RKYEKESEKDTEVLMSALSAMQDK---NQHLE------ 607 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHH---HHHHH------
Confidence 33455677778888889999998888888888888544211 111 22223455555555444332 11110
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002261 713 YTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLS 770 (946)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~ 770 (946)
+.+...-.--+++...+.++++++|-......+.+.|+..|++++...
T Consensus 608 ----------~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 608 ----------NSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred ----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111256677899999999999999999999999999975443
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.41 E-value=0.53 Score=56.19 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhHHH
Q 002261 796 ERIASLENMLNMSSKALVEMASQLSEAE 823 (946)
Q Consensus 796 ~qi~~Le~~~~~~~~~l~~l~~~~~e~~ 823 (946)
+|+++++..+.++.+-..-+..++.+++
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3455555555555444444444444444
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.41 E-value=1 Score=59.57 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=53.8
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCc--cccccC-CCC------CCCCcccHHHHHHH
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK--TYTMGT-GLR------EGFQTGLIPQVMNA 117 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGK--T~Tm~g-~~~------~~~~~Glipr~~~~ 117 (946)
.=.||.-|=|.. +.-.||+..- -+|--|||++|.- +.|+ .|-+.+ +|. ...+.++.+..+..
T Consensus 55 rksF~~yYLP~~-nSyIIYEY~R-------~~G~~~~vvl~~~-s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e 125 (1201)
T PF12128_consen 55 RKSFDDYYLPYS-NSYIIYEYQR-------EDGQLCCVVLSRK-SDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWE 125 (1201)
T ss_pred hhhHHHHcCCCC-CceEEEeeec-------cCCceeEEEEeec-CCCCceeeeeccCccchhhcccccCccccccccHHH
Confidence 346666665654 3567887632 2476678888854 3443 377644 332 12235678888899
Q ss_pred HHHHHHhccccceEEEEeehhhhhhHHHH
Q 002261 118 LFNKIETLRHQMEFQLHVSFIEILKEEVR 146 (946)
Q Consensus 118 lF~~i~~~~~~~~~~v~vS~~EIy~e~v~ 146 (946)
++..+.. .+..++=.++ +.=|..-|+
T Consensus 126 ~~r~~~~--~gv~~S~~i~-~~eYR~IIq 151 (1201)
T PF12128_consen 126 LIRELRR--KGVQVSRKIT-TSEYRAIIQ 151 (1201)
T ss_pred HHHHHHh--CCCeeecCcC-HHHHHHHHc
Confidence 9988876 3556666677 555655555
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.40 E-value=0.022 Score=61.01 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002261 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~ 612 (946)
.+.++..++..+..|+.+...+...+.++... ......-.+.|+.++..|..+ |+..........+.-.+++..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~~~---lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLEEK---LKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777666665432 123333346677777777777 55555555556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002261 613 RLQAEIQSIKAQKVQLQNKI 632 (946)
Q Consensus 613 ~L~~ei~~lk~~kv~L~~~~ 632 (946)
.|..+|...+..+..+...|
T Consensus 208 ~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888887776665444
No 71
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.12 Score=60.57 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002261 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (946)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~r 680 (946)
++.....++...+.....+...+..+...+...+.++..++..|+.+....+.++..|+++.++....|.+
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555556666778888888888888899999999999999998888766655555544
No 72
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.34 E-value=0.69 Score=56.08 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 002261 634 QEAEQFRQWKASREKELLKLKKE--GRKNEFERHKLEALNQRQ-KMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 634 ~e~~~~r~~~~~~~kE~~~Lkk~--~rk~~~e~~kle~~~~~q-~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.|.+....|+.+...|+..+..- .--...+|+.-.++.-++ .-.|+-+++|...-..=||...+
T Consensus 290 ~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 290 KEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777766554431 112223333322222222 24567777787777777776665
No 73
>PRK01156 chromosome segregation protein; Provisional
Probab=97.32 E-value=1.1 Score=57.85 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 854 VAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902 (946)
Q Consensus 854 ~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~ 902 (946)
........+.....++..+...+..+.+.+..++.+...+..++..+..
T Consensus 675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~ 723 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444445555556666666666666666666654445544444333
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.65 Score=55.37 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.5
Q ss_pred CcccHHHHHHHHHHHHH
Q 002261 107 QTGLIPQVMNALFNKIE 123 (946)
Q Consensus 107 ~~Glipr~~~~lF~~i~ 123 (946)
..||-+.++..|+..-.
T Consensus 43 qS~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSD 59 (1118)
T ss_pred hcCCChHHHHHHHHhhh
Confidence 35788888888886543
No 75
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.93 Score=55.89 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=44.4
Q ss_pred cccccc-cccHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 832 RGRWNH-LRFMGDAKNLLQYMFNVAAETRFQLWEKD-TEIKEIKEQLNDLVALLKQSEAQRKELVKQQRM 899 (946)
Q Consensus 832 ~~~w~~-~~sl~eak~~l~~l~~~~~~~~~ql~~~~-~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~ 899 (946)
++++|. ....-+|+..|.+|.......+..+...- ..|...+....++..+-.-.+.++.-+..-...
T Consensus 950 gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~ 1019 (1174)
T KOG0933|consen 950 GTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEK 1019 (1174)
T ss_pred CCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445543 35678999999999999988888766533 335666666666666665566665554444433
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.26 E-value=0.85 Score=55.42 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------
Q 002261 576 HTLKLKALEAQILELKK--KQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI----KQEAEQFRQWK------ 643 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~--~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~----k~e~~~~r~~~------ 643 (946)
.+.+|.++|.+++.... ..+.+.+-...-.+++..+..|..-|..+-.--..+.+-+ .+=...++...
T Consensus 170 le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~ 249 (569)
T PRK04778 170 LEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHL 249 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC
Confidence 34445555555443331 2222333333334555555555555555544433333322 22223333333
Q ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcc
Q 002261 644 --ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSN 721 (946)
Q Consensus 644 --~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~ 721 (946)
.....++..|+++-......+..|+ ++++.+.+..+.+.++
T Consensus 250 ~~~~i~~~i~~l~~~i~~~~~~l~~l~-------------l~~~~~~~~~i~~~Id------------------------ 292 (569)
T PRK04778 250 DHLDIEKEIQDLKEQIDENLALLEELD-------------LDEAEEKNEEIQERID------------------------ 292 (569)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcC-------------hHHHHHHHHHHHHHHH------------------------
Confidence 3456777777777777666666665 3344444444444444
Q ss_pred hHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 722 EKSLQKWLEHELEVSA----NVHEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 722 ~~~~~~~l~~Ele~~~----~~~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
.+-.-|+.|..... ........+....+....+..++..+..
T Consensus 293 --~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 293 --QLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334444333 2334455666667777777777777765
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.24 E-value=0.082 Score=64.80 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhcCCCCcCCCCCccccccCChhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q 002261 742 VRFKYEKQSQVQAALADELTILKQV--DQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQL 819 (946)
Q Consensus 742 ~~~~~e~l~e~R~~l~~el~~l~~~--~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~Le~~~~~~~~~l~~l~~~~ 819 (946)
+++.|......|..++++|...++. .+.+..++..+. ......+..+.+ ..+..+|+.++...+.++....+.+
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~---~~~~r~e~~e~~-r~r~~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQ---AQATRQECAESC-RQRRRQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc---chhccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666655432 122222111110 000111222233 3566899999988888888888877
Q ss_pred hHHHHHHHhhhccccccccccH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 820 SEAEERERALVGRGRWNHLRFM-GDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKE 892 (946)
Q Consensus 820 ~e~~~~~~~~~~~~~w~~~~sl-~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~ 892 (946)
..++.+.. .+|.. .|.......|+..++.....-..++.-|..+.+-++.|=+-|-++..+.+.
T Consensus 569 ~~~e~~~~---------~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei 633 (697)
T PF09726_consen 569 RELESELQ---------ELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEI 633 (697)
T ss_pred HHHHHHHH---------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777653 22222 332333334444444444444444444555555444444444333333333
No 78
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=1.1 Score=55.99 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.1
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
|-+.. |..|+.||||+-.|
T Consensus 61 g~~vN-fI~G~NGSGKSAIl 79 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAIL 79 (1074)
T ss_pred CCCce-EeecCCCCcHHHHH
Confidence 55555 77899999999877
No 79
>PRK01156 chromosome segregation protein; Provisional
Probab=97.20 E-value=1.4 Score=56.79 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4467899999999876
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.17 E-value=0.53 Score=51.26 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 408 QVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (946)
Q Consensus 408 q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee 440 (946)
..+..++..|..++..|..++..++.++..+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~ 55 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQE 55 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888877777765543
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.04 E-value=1.3 Score=53.58 Aligned_cols=249 Identities=18% Similarity=0.241 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------
Q 002261 577 TLKLKALEAQILELKK--KQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ----WK------- 643 (946)
Q Consensus 577 ~~kl~~lE~~~~~Lk~--~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~----~~------- 643 (946)
+.+|.++|.++..... ..+.+.+-...-.+++..+..|...|..+-.--..+...+-.+....+. ..
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~ 246 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLE 246 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCC
Confidence 3444444544443332 1222333333344555566666666666655555544444433333222 21
Q ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcch
Q 002261 644 -ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNE 722 (946)
Q Consensus 644 -~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (946)
.....++.+++++-......+..|+ ++++...+..+.+.++
T Consensus 247 ~~~i~~~i~~i~~~l~~~~~~L~~l~-------------l~~~~~~~~~i~~~Id------------------------- 288 (560)
T PF06160_consen 247 HLDIEEEIEQIEEQLEEALALLKNLE-------------LDEVEEENEEIEERID------------------------- 288 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHH-------------------------
Confidence 2345566666666666666655555 3455555555555544
Q ss_pred HHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcCCCCCccccccCChhHHHHHH
Q 002261 723 KSLQKWLEHELEVSA----NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERI 798 (946)
Q Consensus 723 ~~~~~~l~~Ele~~~----~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi 798 (946)
.+-.-|+.|++... .+..+...++...+..+.+..++..+...=- | ..-....+
T Consensus 289 -~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~--------------------L-~~~e~~~~ 346 (560)
T PF06160_consen 289 -QLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT--------------------L-NHNELEIV 346 (560)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------C-CchHHHHH
Confidence 34444555555544 3445566777778888888888887766310 0 01112344
Q ss_pred HHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002261 799 ASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLND 878 (946)
Q Consensus 799 ~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~ 878 (946)
..|+..+.........+...+.+-. ...+.....+.+....|.+.+.+...
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~-----------------------------~~yS~i~~~l~~~~~~l~~ie~~q~~ 397 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQ-----------------------------VPYSEIQEELEEIEEQLEEIEEEQEE 397 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----------------------------cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444433333322222111110 11122234444455556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcC
Q 002261 879 LVALLKQSEAQRKELVKQQRMREQAVTIALASSASV 914 (946)
Q Consensus 879 l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (946)
+...+..+..+-....+.+......+....|.+.+.
T Consensus 398 ~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 398 INESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666666666666667777777777777777777775
No 82
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=2.1 Score=52.69 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 724 SLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQV 766 (946)
Q Consensus 724 ~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~ 766 (946)
....-+..+++... ++.+..-.|..+.++-..+...|..|+.+
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444555555544 67777888888888888888888888774
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.81 E-value=3.6 Score=55.01 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
++.-+|++|||||.+|
T Consensus 29 ~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTM 44 (1486)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4566799999999998
No 84
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=2.6 Score=53.16 Aligned_cols=77 Identities=21% Similarity=0.167 Sum_probs=39.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhc
Q 002261 837 HLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (946)
Q Consensus 837 ~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~ 913 (946)
.++.+++++..|......+...+..+.+....|...+.++.+....+-.+......+..++....+.+..+-.+.+.
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666655555555555555555555555544444444444444444444444444443333333
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.72 E-value=2.8 Score=52.41 Aligned_cols=82 Identities=23% Similarity=0.303 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 353 SLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (946)
Q Consensus 353 Tl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~ 432 (946)
+..|=+|-.+|+.|+..+++. +..+.+..+++.+...+.-|... ..+ .+.|+.|-.....|.++|++..
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs-------~~~i~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVS-------AEDIAQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--Ccc-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999888865 45667777777777777766331 112 2334555555666677777777
Q ss_pred HHHHHHHhccccc
Q 002261 433 SRRAVVEHCGTDA 445 (946)
Q Consensus 433 ~~~~~lee~~~~~ 445 (946)
+.+.+.+..+.+.
T Consensus 1246 e~L~~~E~~Lsdi 1258 (1758)
T KOG0994|consen 1246 EDLPQEEETLSDI 1258 (1758)
T ss_pred hhhhhhhhhhhhh
Confidence 7776666655543
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.71 E-value=1.8 Score=52.65 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
..+-+|++|||||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999998766
No 87
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.64 E-value=1.4 Score=48.03 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 540 LEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE 595 (946)
Q Consensus 540 Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~ 595 (946)
|..+|..|.++...+...+..+...+.+..+.|..+-+.-+.-|-+++..|.....
T Consensus 140 L~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr 195 (310)
T PF09755_consen 140 LQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKR 195 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433333333333333334456666666666666666666665554433
No 88
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.53 E-value=3.1 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002261 498 NTMDKELNELNKRLEQKESEMKL 520 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~ 520 (946)
.+++.++..|...++.....+..
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~ 223 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKE 223 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444443
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.50 E-value=2.5 Score=51.32 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 532 HFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 532 ~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
.|++.+..++.++..++.+...+...+.-.
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666665554443
No 90
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.32 E-value=4 Score=49.64 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 738 NVHEVRFKYEKQSQVQAALADELTILKQV 766 (946)
Q Consensus 738 ~~~e~~~~~e~l~e~R~~l~~el~~l~~~ 766 (946)
.+.++...++.+...+..|.++|..+...
T Consensus 287 ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 287 ELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 56677788888888888888888765543
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=3.9 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 738 NVHEVRFKYEKQSQVQAALADELT 761 (946)
Q Consensus 738 ~~~e~~~~~e~l~e~R~~l~~el~ 761 (946)
++.|....+..+.-++..|..++.
T Consensus 494 rikE~q~kl~~l~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 494 RIKELQEKLQKLAPEKQELNHQLK 517 (1118)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455555555555555555555543
No 92
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.23 E-value=0.36 Score=50.85 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES----QVELLKQKHKSDEA 610 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~----~~~l~k~k~k~e~~ 610 (946)
.+|.+||.++.+|.+|+..-.=+|++++++-.....|..+ -..+++.|+++... ...|++.+.++...
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~--------ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEE--------EKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 7899999999999999988888888776433322223222 22333344443332 23344444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002261 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATK 690 (946)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k 690 (946)
+..-...|..+.- |-+-.++.++-...-++
T Consensus 90 lq~Ke~qv~~lEg--------------------------------------------------Ql~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 90 LQVKESQVNFLEG--------------------------------------------------QLNSCKKQIEKLEQELK 119 (307)
T ss_pred HhhhHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 3322222222221 22233334555566677
Q ss_pred HHHHHHHHhhhhhcccccC-------CCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 691 RLKELLEARKSSARENSVN-------STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (946)
Q Consensus 691 ~Lke~le~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l 763 (946)
++|..||+-+......++. ...+..|-.. .. .-.-...+++...|..-.++|+.|+.|+..|
T Consensus 120 r~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp------~q-----~~~~sk~e~L~ekynkeveerkrle~e~k~l 188 (307)
T PF10481_consen 120 RCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTP------SQ-----YYSDSKYEELQEKYNKEVEERKRLEAEVKAL 188 (307)
T ss_pred HHHHHHHHHHHhhccCCccccccCCchhhccCCCCh------hh-----hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888644332222211 1111112110 00 1112346777889999999999999999998
Q ss_pred HHhh
Q 002261 764 KQVD 767 (946)
Q Consensus 764 ~~~~ 767 (946)
..+.
T Consensus 189 q~k~ 192 (307)
T PF10481_consen 189 QAKK 192 (307)
T ss_pred hccc
Confidence 8653
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.22 E-value=5.5 Score=50.20 Aligned_cols=41 Identities=27% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 628 L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
-...+++|.+.+++.=..+.+|...++.+-+..++.|.+++
T Consensus 331 e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 331 EVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555554
No 94
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.12 E-value=4.3 Score=48.13 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=51.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002261 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVL 678 (946)
Q Consensus 599 ~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl 678 (946)
++...-..++.+...++.-....+. +|++.=+-+.+..|.....+-..+.-|+...++.+....+=+-....----|
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~---Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~L 617 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARS---DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDL 617 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433 5555555555566666777777777788887777777666664444334455
Q ss_pred HHhHHHHHHHHHHH
Q 002261 679 QRKTEEAAIATKRL 692 (946)
Q Consensus 679 ~rk~eE~~a~~k~L 692 (946)
+|+.+++.-...+|
T Consensus 618 qrRlqaaE~R~eel 631 (961)
T KOG4673|consen 618 QRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 95
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.10 E-value=3.6 Score=46.99 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQER 551 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr 551 (946)
..+|+.+|.+++.++...+..+.... ...+....+|.+++..+..|+.+.
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~-----~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETA-----DDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555555555444432 333444566666666666665443
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.02 E-value=3.9 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 002261 647 EKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 647 ~kE~~~Lkk~~rk~~~e~~kle 668 (946)
++.+..|+.....+..+|.+++
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444555555555555555
No 97
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.0035 Score=71.59 Aligned_cols=93 Identities=25% Similarity=0.452 Sum_probs=61.0
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHH----HHHHHHHHH
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glip----r~~~~lF~~ 121 (946)
..|..-.-|.|.+.+. ..+..+|+++-.|.-.-++ .|.|||||||||..=...-..|-||- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 4577778888877643 3367788888888766554 59999999999932110111122221 245567776
Q ss_pred HHhccccceEEEEeehhhhhhHH
Q 002261 122 IETLRHQMEFQLHVSFIEILKEE 144 (946)
Q Consensus 122 i~~~~~~~~~~v~vS~~EIy~e~ 144 (946)
...--++..+...||||..|.-+
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPE 99 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPE 99 (663)
T ss_pred HHHhCcCcceEEEeeeccccCcc
Confidence 66665677788899999888644
No 98
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=6.7 Score=48.83 Aligned_cols=120 Identities=25% Similarity=0.319 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L 614 (946)
.++.+.+.+++..++|.+.++.++..+....- .-+.++++++-++.+|--- .=+..+.+..++...-....+.+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~-kf~~l~~ql~l~~~~l~l~--~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQSQ-KFRDLKQQLELKLHELALL--EKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888764322 3345555555554443211 01123333344444444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (946)
Q Consensus 615 ~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~ 657 (946)
..+|.......-+-+-+++.=-.....|+..+++++..|.++-
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~kei 796 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEI 796 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHH
Confidence 5554444333222222232222344555566666655554443
No 99
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=5 Score=47.13 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=63.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE 684 (946)
...|.++..|+.+..+||.+ +.++.===++.++....+.+..|+++.+..+..+...++-.++.+.+.+---+..+.-+
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQ-IELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544 23321111777788888888888888888888888888888887777777777888888
Q ss_pred HHHHHHHHHHH
Q 002261 685 AAIATKRLKEL 695 (946)
Q Consensus 685 ~~a~~k~Lke~ 695 (946)
...++.+++=.
T Consensus 383 ~~~l~~~i~l~ 393 (581)
T KOG0995|consen 383 LNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHH
Confidence 88888888755
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.89 E-value=6.1 Score=47.90 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVD 767 (946)
Q Consensus 725 ~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~~ 767 (946)
...+..+=+|+..-+......+++.+.+-+.+.+++..+.-++
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888999999999999999999999988876654
No 101
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.81 E-value=6.6 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002261 499 TMDKELNELNKRLEQKESEMKL 520 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~ 520 (946)
++..++..|...++..-..+..
T Consensus 198 ~l~~~~~~l~~~~e~IP~l~~~ 219 (560)
T PF06160_consen 198 KLKEETDELEEIMEDIPKLYKE 219 (560)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555555544444433
No 102
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=3.5 Score=44.23 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002261 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (946)
Q Consensus 580 l~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk 659 (946)
+.+|-.++..+..-..--..+......-...+..-+..+.+-....+-+++.+-.....+...+..++.=+..|+-+..+
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444333444333333333333333333334444445555555566666777777778888888888
Q ss_pred hHHHHHHHHH
Q 002261 660 NEFERHKLEA 669 (946)
Q Consensus 660 ~~~e~~kle~ 669 (946)
...++.-|+.
T Consensus 209 ~~~e~a~l~~ 218 (265)
T COG3883 209 ALGEKAALEE 218 (265)
T ss_pred hHHHHHHHHH
Confidence 8888777773
No 103
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.75 E-value=7.5 Score=47.82 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhH
Q 002261 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (946)
Q Consensus 496 ~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~ 575 (946)
....|...|.+|..+|......+.... .....+.....+|...+..++.+|..|..++..... ....+-.+
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~-----~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~----rE~rll~d 98 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQ-----AENERLSQLNQELRKECEDLELERKRLREEIKEYKF----REARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhh
Confidence 444555666666666665554443322 344445566777888888888888888887766421 11222222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 002261 576 H---TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE---AEQFRQWKASREKE 649 (946)
Q Consensus 576 ~---~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e---~~~~r~~~~~~~kE 649 (946)
| +.--=.|.++++.||.-|-+-.-+--.-+++++++..|+.++++.-+.|.-.-++|-+- .+.=|..+..+.||
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkE 178 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKE 178 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11122344455555555544333333345667777777777777766666666666633 34455666666777
Q ss_pred HHHHHH
Q 002261 650 LLKLKK 655 (946)
Q Consensus 650 ~~~Lkk 655 (946)
+.+...
T Consensus 179 L~~~~~ 184 (717)
T PF09730_consen 179 LDQHLN 184 (717)
T ss_pred HHHhcC
Confidence 766443
No 104
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.60 E-value=4.3 Score=45.40 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (946)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lk 654 (946)
+..|+.||..++.....-++.-.++..++++.+....-|..+|.
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQ 298 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667777777777777777777777777777766666666554
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.54 E-value=2.1 Score=45.35 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 536 KIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 536 ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
.+..++.++..++.+...+..++..
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=8.8 Score=46.75 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (946)
Q Consensus 580 l~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k 633 (946)
+.++..++..|++... +|.-..+++++++..+..+..+|+.+-..|-.++.
T Consensus 666 I~~lD~~~e~lkQ~~~---~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEK---ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555655333 35666677778888888888888777666644444
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.38 E-value=4.8 Score=43.12 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhHH
Q 002261 796 ERIASLENMLNMSSKALVEMASQLSEA 822 (946)
Q Consensus 796 ~qi~~Le~~~~~~~~~l~~l~~~~~e~ 822 (946)
..|.+|+..+......+..+...-..+
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 456666666666655555555443333
No 108
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.33 E-value=0.018 Score=71.94 Aligned_cols=50 Identities=12% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (946)
Q Consensus 578 ~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~ 627 (946)
.++.+||.....|..+.+......+...=++++...|+..+..+.....+
T Consensus 257 ~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~e 306 (722)
T PF05557_consen 257 AHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEE 306 (722)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776666555555554444444455555666666655555544333
No 109
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.29 E-value=0.0048 Score=76.98 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002261 607 SDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~ 624 (946)
.+.++..|+.+++.++.+
T Consensus 183 ~e~~~~~l~~e~~~l~~~ 200 (722)
T PF05557_consen 183 AESQIQSLESELEELKEQ 200 (722)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 110
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=15 Score=46.72 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002261 606 KSDEAAKRLQAEIQSIKA---QKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (946)
Q Consensus 606 k~e~~~~~L~~ei~~lk~---~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~k 666 (946)
..-.++..|+..+..+.. .+...+..++.+....+....+.++++.+++++.+-....+.+
T Consensus 518 ~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~ 581 (1293)
T KOG0996|consen 518 TGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNK 581 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444322 2233445566666666666677777777777777754444333
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.98 E-value=13 Score=45.85 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=31.9
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 371 VVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEY 431 (946)
Q Consensus 371 ~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~ 431 (946)
..+.|+....+..+..++..++.++.. ...+.+..+.+++..+..|.-++.+.
T Consensus 325 ~sqkd~~~~~~~~~~~e~~~~~~~l~~--------~~~ear~~~~q~~~ql~~le~~~~e~ 377 (980)
T KOG0980|consen 325 ASQKDPRELQIEQLSREVAQLKAQLEN--------LKEEARRRIEQYENQLLALEGELQEQ 377 (980)
T ss_pred cccCChhhHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344466666777777888887777632 23344555666666666665555443
No 112
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.70 E-value=13 Score=44.65 Aligned_cols=270 Identities=20% Similarity=0.180 Sum_probs=129.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE 684 (946)
.....++..|..||..+|......--.--+-.++.......+..+...+++.....+..+..|..+. ....-|..+...
T Consensus 168 ~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~ 246 (522)
T PF05701_consen 168 EENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAE 246 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3556677777888887777665541111111122222333444455555555555555566665433 344555566666
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 685 AAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTIL 763 (946)
Q Consensus 685 ~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l 763 (946)
+...+..|+..|...... ...+.. ..............-+..||+... .+..+......+...=..|..+|...
T Consensus 247 a~~~l~~Lq~El~~~~~~-~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~ 321 (522)
T PF05701_consen 247 ASAELESLQAELEAAKES-KLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKE 321 (522)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666543321 000000 000000000111222334444433 34444444444444444444444433
Q ss_pred HHhhhhhhcCCCCcCCCCCccccccCChhHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHH
Q 002261 764 KQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGD 843 (946)
Q Consensus 764 ~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~e 843 (946)
+. .+..+..+.......+..|...+..+..++.+..... =+.-..+.+
T Consensus 322 K~-------------------------------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e-~~~k~~~~~ 369 (522)
T PF05701_consen 322 KE-------------------------------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE-EKAKEAMSE 369 (522)
T ss_pred HH-------------------------------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh-cchhhhHHH
Confidence 33 3333333444444444444444443333332111100 011123445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchh
Q 002261 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSA 912 (946)
Q Consensus 844 ak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~ 912 (946)
.-..|+.+...+...+......+.++..++.........+..++.+......+.+.-..+-...+..+.
T Consensus 370 l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 370 LPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777777777777766655555544444444333333
No 113
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.63 E-value=25 Score=47.46 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ------NKIKQEAEQFRQWKASREKELL 651 (946)
Q Consensus 578 ~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~------~~~k~e~~~~r~~~~~~~kE~~ 651 (946)
..+..++.++..|+.. ..++.......+.++..++..+..+...+.-+. ..|......|...-.....++.
T Consensus 383 eEleelEeeLeeLqeq---Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQ---LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444433332 233444455555555555555555555544432 3344444444444444444444
Q ss_pred HHHHHhhhh
Q 002261 652 KLKKEGRKN 660 (946)
Q Consensus 652 ~Lkk~~rk~ 660 (946)
.++.+....
T Consensus 460 elE~kL~~l 468 (1486)
T PRK04863 460 SLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHH
Confidence 443333333
No 114
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.56 E-value=6.9 Score=40.80 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHH
Q 002261 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKAL-------EAQILEL-KKKQESQVELLKQK 604 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~l-------E~~~~~L-k~~~~~~~~l~k~k 604 (946)
.+........++..+..|++.+...+.++..+.++...++.. ...-+..+ ...+.++ .+-....++...+|
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek-~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK 138 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK-QKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK 138 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566778888889999988888887654443333211 00111111 1111111 12223346677777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
...+.++...+.+|.++++....-
T Consensus 139 ~hAeekL~~ANeei~~v~~~~~~e 162 (207)
T PF05010_consen 139 AHAEEKLEKANEEIAQVRSKHQAE 162 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 888888888888888877765554
No 115
>PRK09039 hypothetical protein; Validated
Probab=94.53 E-value=6.3 Score=44.66 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHH
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~ 578 (946)
.++.+|.+|+.+|..+-..+. +. ......++..+.+|..++..++.+|..|...+...... ..+.+.
T Consensus 50 ~~~~eL~~L~~qIa~L~e~L~-le----~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~--------~~~~~~ 116 (343)
T PRK09039 50 GKDSALDRLNSQIAELADLLS-LE----RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGA--------GAAAEG 116 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cchHHH
Confidence 344555555555555332221 11 12334566888889999999999998888876632110 012223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 579 KLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 579 kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
++..++.++..++ ..-...--++..|+.+|..|+.|...|
T Consensus 117 ~~~~l~~~L~~~k----------~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 117 RAGELAQELDSEK----------QVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444443322222 222233445666777777777774444
No 116
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.51 E-value=16 Score=44.68 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhh--hHHHHHHHHHHHHHHHHH
Q 002261 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ--DGHTLKLKALEAQILELK 591 (946)
Q Consensus 528 ~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~--~~~~~kl~~lE~~~~~Lk 591 (946)
.+....+.+|.+|+..+..++.+......-+..+.+.+....+-+. .++...|.+|+.-+..|.
T Consensus 115 ~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 115 RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444556778888887777665533333333333333222222222 223334566665544443
No 117
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.49 E-value=6.4 Score=40.06 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002261 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ 615 (946)
Q Consensus 536 ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~ 615 (946)
.|.+|+.-..+|..|...|...+..+. +...+|.++ +.+|..++..++ +.-...+.+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~e----e~na~L~~e----~~~L~~q~~s~Q--------------qal~~aK~l~ 66 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAE----EGNAQLAEE----ITDLRKQLKSLQ--------------QALQKAKALE 66 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 456666666677777766666666543 222333322 233333322221 3334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002261 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (946)
Q Consensus 616 ~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~ 695 (946)
+|+.+||.. .+.+-++..+.-..-...++|...|-.+-...+.+..++.... --+++++.+...-...|+-+
T Consensus 67 eEledLk~~----~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~----~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 67 EELEDLKTL----AKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER----DGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----hhHHHHHHHHHHhhHHHHHH
Confidence 666666654 3334444445555555555555555555555555555544322 24555555655544444444
Q ss_pred H
Q 002261 696 L 696 (946)
Q Consensus 696 l 696 (946)
+
T Consensus 139 l 139 (193)
T PF14662_consen 139 L 139 (193)
T ss_pred H
Confidence 3
No 118
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.42 E-value=8.2 Score=41.05 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEI 558 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l 558 (946)
.++..++..+++.+..++.++..+. .++..++.++.++..-++.....+
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le------------~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLE------------NQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555443 555566666666655555555555
No 119
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.40 E-value=9.7 Score=41.85 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHH---HHHHHHHH
Q 002261 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI-----------KAQKVQLQNKIK---QEAEQFRQ 641 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~l-----------k~~kv~L~~~~k---~e~~~~r~ 641 (946)
.+..+...-.++..|+.......+|.+.-.........-...-..+ --+-..|++|+| +|...+|.
T Consensus 102 le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~ 181 (306)
T PF04849_consen 102 LEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRS 181 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666677777777777776553333221111110000 001122333333 44444444
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcc
Q 002261 642 WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSN 721 (946)
Q Consensus 642 ~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~ 721 (946)
.-..+..|-..+.++. ++...---+...+|.+.+..|.+.|.++.
T Consensus 182 Ea~~L~~et~~~EekE--------------qqLv~dcv~QL~~An~qia~LseELa~k~--------------------- 226 (306)
T PF04849_consen 182 EASQLKTETDTYEEKE--------------QQLVLDCVKQLSEANQQIASLSEELARKT--------------------- 226 (306)
T ss_pred HHHHhhHHHhhccHHH--------------HHHHHHHHHHhhhcchhHHHHHHHHHHHH---------------------
Confidence 3333333333332222 22222234566788888899999888533
Q ss_pred hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 722 EKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 722 ~~~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
.-..+..+|+.-+. ++.++...+..+..+...+...|...+.
T Consensus 227 --Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 227 --EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23445556666655 7888888888888888888888776655
No 120
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.24 E-value=13 Score=42.59 Aligned_cols=125 Identities=21% Similarity=0.322 Sum_probs=65.1
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 521 FGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVEL 600 (946)
Q Consensus 521 ~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l 600 (946)
+++++++...+.+.+-+..-...+..-.+|++-|..++..+... ---|.++|.. +++++.+.
T Consensus 383 LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~n----yv~LQEry~~----------eiQqKnks---- 444 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKAN----YVHLQERYMT----------EIQQKNKS---- 444 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh----HHHHHHHHHH----------HHHHhhhH----
Confidence 55666666556665555555555555556666666555544321 1122333311 12222222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002261 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (946)
Q Consensus 601 ~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e 663 (946)
..+--..+..+..-.++|+.|++-|..|-+....-...++..+..++.|...|..+-.+++.+
T Consensus 445 vsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 445 VSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222233333334556666666666655555666666666777777777777666665444
No 121
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.22 E-value=0.024 Score=61.02 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.7
Q ss_pred cccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 66 ~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+-.+.|+|..+.+--++.|+..|+||||||+||
T Consensus 110 ~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 110 ELGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 334678999999999999999999999999999
No 122
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.95 E-value=0.016 Score=72.25 Aligned_cols=28 Identities=39% Similarity=0.502 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 531 HHFGKKIMELEEEKRIVQQERDRLLAEI 558 (946)
Q Consensus 531 ~~~e~ki~~Le~ei~~l~kEr~~L~~~l 558 (946)
..+.+++..|+.+...+..+++.|...+
T Consensus 394 ~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 394 KQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666555433
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.86 E-value=2.4 Score=40.14 Aligned_cols=88 Identities=25% Similarity=0.400 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L 614 (946)
..+..|.+++..++.+|+.+..++-.+....+. + ......+..|+.++.+|+.+-...-+|.. ...+++..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~----~-~~~~~~~~~L~~el~~l~~ry~t~LellG---EK~E~veEL 101 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEE----L-RALKKEVEELEQELEELQQRYQTLLELLG---EKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---chHHHHHHH
Confidence 444555556666666666666655544321111 1 12235677888887777776666444444 456678889
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 615 QAEIQSIKAQKVQLQN 630 (946)
Q Consensus 615 ~~ei~~lk~~kv~L~~ 630 (946)
+.+|.+||......+.
T Consensus 102 ~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 102 RADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987555543
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.82 E-value=8.6 Score=39.13 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002261 501 DKELNELNKRLEQKESEMKLFGDI--DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (946)
Q Consensus 501 ~~el~~L~~~Le~kE~~~~~~~k~--~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~ 563 (946)
+.++.+|+.-+...|+.-..+... .++...+++..+|..|.++..++..+++.+..+...+..
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 344444444444444433332211 233455566677888888888888888888777777643
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.67 E-value=0.022 Score=60.27 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=29.0
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..||||.-+.. .+ +...|.. +..+...--..||. +|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g-~~-N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ES-NELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TT-THHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-Cc-HHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 36999988742 23 4555533 33444442223444 788999999999987
No 126
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.30 E-value=23 Score=42.30 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHH
Q 002261 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKS 724 (946)
Q Consensus 645 ~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (946)
+++++|.+|-..-...+.-...+...+..|-+-|-++.......+.+|++.|..+.
T Consensus 289 ~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s------------------------ 344 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRS------------------------ 344 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------------------
Confidence 36777777777777777777777777777777777777788888888888877421
Q ss_pred HHHHHHHHHHHHHhHH-----------HHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 002261 725 LQKWLEHELEVSANVH-----------EVRFKYEKQ-SQVQAALADELTILKQV 766 (946)
Q Consensus 725 ~~~~l~~Ele~~~~~~-----------e~~~~~e~l-~e~R~~l~~el~~l~~~ 766 (946)
-...+..||.++..++ ++-..++.+ ++.++.+..++..|+..
T Consensus 345 DYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~ 398 (629)
T KOG0963|consen 345 DYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVA 398 (629)
T ss_pred cHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcc
Confidence 2344556666665322 222345554 78888999999988764
No 127
>PRK06893 DNA replication initiation factor; Validated
Probab=93.25 E-value=0.039 Score=58.79 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.4
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++||..++.. + .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 478999999532 2 21 1233334444578888999999999999998
No 128
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.87 E-value=14 Score=44.17 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-------ch
Q 002261 499 TMDKELNELNKRLEQKESEMKLFG-DIDT--EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSD-------GH 568 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~-k~~~--~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~-------~~ 568 (946)
=++.++..+..+|+..|..+..+. ++.. ......+..++..++.++..++.++..+...+..+..... ..
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~ 244 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG 244 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 355667777777777777766653 2211 1112234466777777777777776666666555432100 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 002261 569 TQKMQDGHTLKLKALEAQILELKK 592 (946)
Q Consensus 569 ~~Kl~~~~~~kl~~lE~~~~~Lk~ 592 (946)
....-...+.++.+++.++..|..
T Consensus 245 ~~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 245 SSVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred cccCCCchHHHHHHHHHHHHHHHH
Confidence 011223455677888888776653
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.86 E-value=9.6 Score=36.84 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=72.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q 002261 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTE 683 (946)
Q Consensus 604 k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~e 683 (946)
+..+..++..+...+.....+...+...|+......+.....+++|+.. ....+..|. -|+....
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~-------Ha~~~~~L~--------~lr~e~~ 69 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK-------HAEDIKELQ--------QLREELQ 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHH--------HHHHHHH
Confidence 3444555566666666666666666667777777777777777777642 222222222 1222233
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 684 EAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTI 762 (946)
Q Consensus 684 E~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~ 762 (946)
++...+..|+...+.-+..- ......|-.++-..-..+.++...++.|...+.-|-.+|..
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l------------------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAEL------------------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444333211000 02346677777777777888888999999999988888764
No 130
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.77 E-value=19 Score=40.15 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhhhccCCC-CCcccCCCCcchhhhhhccCC--CceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCc
Q 002261 293 GLLALGNVISALGDEKKRRE-GVHVPYRDSKLTRLLQDSLGG--NSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (946)
Q Consensus 293 sL~~L~~vi~~L~~~~~~~~-~~~ipyRdSkLTrlLqdsLgG--ns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknk 369 (946)
+.+.||.||..+++.-..+- ..|. .|.| .-.|.+|++|-...--..-||..|=.+++-- .
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarL-------------rlF~LRPkqTAvlvtvltG~liSA~tLailf~~~~~l--r-- 70 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARL-------------RLFGLRPKQTAVLVTVLTGMLISAATLAILFLLNRNL--R-- 70 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHH-------------hHhccCcccceeehhhhhcchhhHHHHHHHHHhhhhH--H--
Confidence 57889999999987321110 1111 1112 3467777787665544455666555443211 0
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHH
Q 002261 370 PVVNRDLISSDMQKLRQQLKYLQAELC 396 (946)
Q Consensus 370 p~vN~d~~~~ei~~Lr~ei~~Lk~eL~ 396 (946)
. -...+..++.+|..++.+|.
T Consensus 71 ---~---gVfqlddi~~qlr~~rtel~ 91 (499)
T COG4372 71 ---S---GVFQLDDIRPQLRALRTELG 91 (499)
T ss_pred ---h---hhhhHHHHHHHHHHHHHHHH
Confidence 0 01234556666677777763
No 131
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.69 E-value=20 Score=40.07 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002261 743 RFKYEKQSQV 752 (946)
Q Consensus 743 ~~~~e~l~e~ 752 (946)
+.-|....+.
T Consensus 279 e~yyQ~y~~l 288 (499)
T COG4372 279 EAYYQAYVRL 288 (499)
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 132
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.66 E-value=28 Score=41.75 Aligned_cols=141 Identities=23% Similarity=0.245 Sum_probs=88.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL---KKEGRKNEFERHKLEALNQRQKMVLQRK 681 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~L---kk~~rk~~~e~~kle~~~~~q~~vl~rk 681 (946)
.-..+.+..|+.+|.+++..-.++-.++..+.+.|+........-+..+ ..+.+....++..++.....+..-+..|
T Consensus 284 ~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k 363 (511)
T PF09787_consen 284 DHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLK 363 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3344444445555544444444444455555555544444443333333 5566778888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Q 002261 682 TEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA---NVHEVRFKYEKQSQVQAALAD 758 (946)
Q Consensus 682 ~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~---~~~e~~~~~e~l~e~R~~l~~ 758 (946)
+.+-..-+.+|+.++-++. ....|-+-|-.+.. .+..-...++.+..+|.++.=
T Consensus 364 ~~~ke~E~q~lr~~l~~~~-----------------------~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~l 420 (511)
T PF09787_consen 364 LKEKESEIQKLRNQLSARA-----------------------SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRL 420 (511)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------------ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccc
Confidence 9999999999998887532 01123222222211 345557788888888888888
Q ss_pred HHHHHHHhhh
Q 002261 759 ELTILKQVDQ 768 (946)
Q Consensus 759 el~~l~~~~e 768 (946)
+|.++.....
T Consensus 421 qlErl~~~l~ 430 (511)
T PF09787_consen 421 QLERLETQLK 430 (511)
T ss_pred cHHHHHHHHH
Confidence 8888776543
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.32 E-value=12 Score=36.70 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK 591 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk 591 (946)
.++..|+.++..++.....+...+.... ....-.+.+.++++.||.++....
T Consensus 42 ~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 42 KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555554444444321 112222356677888888855433
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.14 E-value=11 Score=42.43 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 613 RLQAEIQSIKAQKVQL 628 (946)
Q Consensus 613 ~L~~ei~~lk~~kv~L 628 (946)
.+..+|+.++.++.++
T Consensus 241 ~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 241 ELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333343333333
No 135
>PRK06620 hypothetical protein; Validated
Probab=91.98 E-value=0.042 Score=57.92 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=31.9
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCC---eeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n---~ti~ayGqtgSGKT~Tm 98 (946)
..|+||..+. ..+ +...|..+ ..+.+. -|+| -.++-||++||||||.+
T Consensus 11 ~~~tfd~Fvv-g~~-N~~a~~~~-~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIV-SSS-NDQAYNII-KNWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEe-ccc-HHHHHHHH-HHHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 4789999885 333 45555443 223221 1454 35899999999999999
No 136
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.90 E-value=18 Score=37.80 Aligned_cols=79 Identities=19% Similarity=0.420 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 002261 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK-----QESQVELLK 602 (946)
Q Consensus 528 ~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~-----~~~~~~l~k 602 (946)
.+...|..++..|+.+...-.++...+..++..+. ...++++..+..|.+|+.++...+.. ..-+.++..
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~ 114 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999988888875 56778888899999999996654422 223555666
Q ss_pred HHHhhHHHH
Q 002261 603 QKHKSDEAA 611 (946)
Q Consensus 603 ~k~k~e~~~ 611 (946)
.|..++.++
T Consensus 115 EK~~LEke~ 123 (206)
T PF14988_consen 115 EKARLEKEA 123 (206)
T ss_pred HHHHHHHHH
Confidence 666666555
No 137
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=31 Score=40.37 Aligned_cols=162 Identities=16% Similarity=0.265 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----Cc--chh
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGDIDTEA--LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-----SD--GHT 569 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k~~~~~--~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~-----~~--~~~ 569 (946)
.|+.++..|...+++-.+..-+....+... .+..++.++.+|+.+...+..|.+.+...+...... .+ ...
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 456666667766665544333322233332 333455667777777777777777776655443221 11 011
Q ss_pred hh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 570 QK-------MQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW 642 (946)
Q Consensus 570 ~K-------l~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~ 642 (946)
-. -.+.|-.++-+||.++ |+......+......+++.....+.+.=....-++ .+||.|.+.++-.
T Consensus 92 esLLqESaakE~~yl~kI~eleneL---Kq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR----~rlr~elKe~KfR 164 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENEL---KQLRQELTNVQEENERLEKVHSDLKESNAAVEDQR----RRLRDELKEYKFR 164 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH----HHHHHHHHHHHHH
Confidence 11 1234667788888884 44433333333333333333333222222222222 2345555555555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Q 002261 643 KASREKELLKLKKEGRKNEFERHKL 667 (946)
Q Consensus 643 ~~~~~kE~~~Lkk~~rk~~~e~~kl 667 (946)
++.+-.|-..|..+.--.+..++.|
T Consensus 165 E~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 165 EARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 5555555555555544444444433
No 138
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.81 E-value=47 Score=42.35 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002261 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (946)
Q Consensus 590 Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~ 669 (946)
++..++...++...-.-.|..+......|.+|......|..+..+.+.... ..++..-..+..-...+..+..|+.
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~----~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAK----QAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334455555666666666666555555444433333222 2233333334444444445557777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 670 LNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 670 ~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
..++-.+.|.+|++...+++.|.+...+
T Consensus 1669 ~~~~~~~l~~~r~~g~~~ar~rAe~L~~ 1696 (1758)
T KOG0994|consen 1669 YYELVDRLLEKRMEGSQAARERAEQLRT 1696 (1758)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 7778888899999998888887776654
No 139
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.71 E-value=2.2 Score=35.25 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 851 MFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (946)
Q Consensus 851 l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~ 907 (946)
|...+.++++..+.++++|...+.....+.++|+.++.+..+|..++......+..+
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888899999999999999999999999999999999999999999988888763
No 140
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.69 E-value=2.5 Score=43.81 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 533 FGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
++.++..+..++..+.+.+..+..++..+.
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~ 101 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELN 101 (194)
T ss_dssp ------------------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 345566666666666666666666655543
No 141
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.58 E-value=38 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002261 379 SDMQKLRQQLKYLQAEL 395 (946)
Q Consensus 379 ~ei~~Lr~ei~~Lk~eL 395 (946)
.++..++.++..++.+|
T Consensus 34 ~eL~~~qeel~~~k~~l 50 (522)
T PF05701_consen 34 TELEKAQEELAKLKEQL 50 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555556666666655
No 142
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.49 E-value=34 Score=40.16 Aligned_cols=83 Identities=28% Similarity=0.286 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchH
Q 002261 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEK 723 (946)
Q Consensus 644 ~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (946)
....+++..|+.+-.+....+..|+ +.+|.+-+--+.+.++
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~Le-------------ld~aeeel~~I~e~ie-------------------------- 291 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQLE-------------LDEAEEELGLIQEKIE-------------------------- 291 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHhh-------------hhhHHHHHHHHHHHHH--------------------------
Confidence 4556677777777777777777777 3355555555555444
Q ss_pred HHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 724 SLQKWLEHELEVSANVHE----VRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 724 ~~~~~l~~Ele~~~~~~e----~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
..-.-+++|++....+.+ +...|++..+.+..|..++..++.
T Consensus 292 ~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~ 337 (570)
T COG4477 292 SLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKE 337 (570)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666553333 356777777888888888877665
No 143
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.47 E-value=20 Score=37.47 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002261 544 KRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (946)
Q Consensus 544 i~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~ 623 (946)
....+.++..+...+.. .....+..+.+.+..+..|+.+.+......+.|...+.+|..|+.++..+..
T Consensus 31 ~~~i~~~r~~l~s~y~~-----------q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~ 99 (206)
T PF14988_consen 31 LEEIQRERQELVSRYAK-----------QTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRA 99 (206)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555433 1123345566667777788889999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 002261 624 QKVQLQNKIK 633 (946)
Q Consensus 624 ~kv~L~~~~k 633 (946)
.+...+.+|+
T Consensus 100 e~~~~l~~~~ 109 (206)
T PF14988_consen 100 EHAEKLQEAE 109 (206)
T ss_pred HHHHHHHHHH
Confidence 8877766665
No 144
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.41 E-value=20 Score=43.74 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 496 WQNTMDKELNELNKRLEQKESEMKLFG-------DIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 496 ~q~~l~~el~~L~~~Le~kE~~~~~~~-------k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
...+|.+.|.-||.+|...|...+... -..++.+...++.++.+.......|+.-.++|..-+++.
T Consensus 395 ENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 395 ENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 346788899999999998876654321 123456666677777777777777776666666665553
No 145
>PRK11281 hypothetical protein; Provisional
Probab=91.39 E-value=59 Score=42.65 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhc-ccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Q 002261 667 LEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAR-ENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFK 745 (946)
Q Consensus 667 le~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~ 745 (946)
+....+.|...+..++...+..+..|++.+-.++.... .+-..+......+.-...--++..++.+......+.++...
T Consensus 221 l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~ 300 (1113)
T PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEK 300 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666666665543221100 00000000000000000112455556666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002261 746 YEKQSQVQAALADELTILKQV 766 (946)
Q Consensus 746 ~e~l~e~R~~l~~el~~l~~~ 766 (946)
++.+..++......+..+.+.
T Consensus 301 ~~~l~~~~~~~~~~l~~~~q~ 321 (1113)
T PRK11281 301 LNTLTQQNLRVKNWLDRLTQS 321 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666554
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.28 E-value=9.8 Score=37.07 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~ 563 (946)
.+...+..|.++|+..+.....+. .........+..|+.++..+..++..|..++.++..
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~-----~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLI-----LDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655554443322 122233355677778888888888888777777653
No 147
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.12 E-value=33 Score=39.36 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
++++.++.+...|.++......+--++-+-...|-..+...++|...-+-+..+++.++.+|.
T Consensus 484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 484 TLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred eHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888888888888877777776677777778888888888887777777777666666655
No 148
>PRK09087 hypothetical protein; Validated
Probab=91.07 E-value=0.09 Score=55.91 Aligned_cols=46 Identities=28% Similarity=0.246 Sum_probs=31.6
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||..+. ..+ +..+|. ++.....-.|..++-||++||||||.+
T Consensus 16 ~~~~~~~Fi~-~~~-N~~a~~-----~l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLV-TES-NRAAVS-----LVDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceee-cCc-hHHHHH-----HHHhcccCCCCeEEEECCCCCCHHHHH
Confidence 4789999994 233 444555 334333223556899999999999999
No 149
>PRK09039 hypothetical protein; Validated
Probab=90.97 E-value=27 Score=39.62 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002261 629 QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (946)
Q Consensus 629 ~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~L 692 (946)
+..++.+....|..-...+-+|..++.+.+..+..+..|+ ..-...|.+|..+......+.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~---~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG---RRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Confidence 3444566666666677777777777777766666655554 222333334444444443333
No 150
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.91 E-value=17 Score=35.66 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEI 558 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k--~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l 558 (946)
.|.+.++-|..+|+..+..+..... ..++..-.+|+.++..|+.+....+...+.+...+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444455444444444433210 01223333455555555555555444444444443
No 151
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.84 E-value=46 Score=40.51 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002261 498 NTMDKELNELNKRLEQKESEMKLF 521 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~ 521 (946)
..|+.++.++..+++..+..+..+
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l 354 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKML 354 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655555443
No 152
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.82 E-value=36 Score=39.17 Aligned_cols=117 Identities=27% Similarity=0.289 Sum_probs=62.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002261 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK---LKKEGRKNEFERHKLEALNQRQKMVL 678 (946)
Q Consensus 602 k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~---Lkk~~rk~~~e~~kle~~~~~q~~vl 678 (946)
|.-+....+-..|+-++..+|...+.|+-+-..|... +.|=+.+ +-+-.-+.+.++.+|+. |
T Consensus 404 k~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq-------KnksvsqclEmdk~LskKeeeverLQ~--------l 468 (527)
T PF15066_consen 404 KHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ-------KNKSVSQCLEMDKTLSKKEEEVERLQQ--------L 468 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHhhhhHHHHHHHHH--------H
Confidence 3333444555678888889999999986555443322 2222221 11112223344444442 2
Q ss_pred HHhHHHHH-HHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002261 679 QRKTEEAA-IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALA 757 (946)
Q Consensus 679 ~rk~eE~~-a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~ 757 (946)
+.++|.|. .+.-.||..-+ ..|.+.+.-.+|....=..-+++|.+|-
T Consensus 469 kgelEkat~SALdlLkrEKe--------------------------------~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 469 KGELEKATTSALDLLKREKE--------------------------------TREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22333333 33444443322 2345555656667666667778888888
Q ss_pred HHHHHHHH
Q 002261 758 DELTILKQ 765 (946)
Q Consensus 758 ~el~~l~~ 765 (946)
..+.+|-.
T Consensus 517 s~leKLva 524 (527)
T PF15066_consen 517 SRLEKLVA 524 (527)
T ss_pred HHHHHHHH
Confidence 88877654
No 153
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.78 E-value=51 Score=40.85 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ----------------- 597 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~----------------- 597 (946)
..|.-|+++...++.|+..|...+......-+.....+ .+...++..|-.++..|++-+...
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~al-s~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGAL-SEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 45666777777777777777777666543222111122 222345666666666555421100
Q ss_pred -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002261 598 -----------VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (946)
Q Consensus 598 -----------~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~k 666 (946)
.-|.-.-.....++..|+.+|..++.....+..+-+++..+++..-......+..+.+..+..+..+..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 011122235556678888889989888888888888888888888888999999999988888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002261 667 LEALNQRQKMVLQRKTEEAAIATKRL 692 (946)
Q Consensus 667 le~~~~~q~~vl~rk~eE~~a~~k~L 692 (946)
|+.+-..-..+.-.....+.++.-+|
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDEL 449 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDEL 449 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88665544444333333333333333
No 154
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.64 E-value=59 Score=41.36 Aligned_cols=137 Identities=19% Similarity=0.377 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hcc----------------ccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 002261 497 QNTMDKELNELNKRLEQKESEMKL---FGD----------------IDTEALRHHFG---KKIMELEEEKRIVQQERDRL 554 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~---~~k----------------~~~~~~~~~~e---~ki~~Le~ei~~l~kEr~~L 554 (946)
..++..++..+++.+..++..+.. +-+ .+.+..+++|. ..|..+++++..+..-+..+
T Consensus 264 ~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~f 343 (1141)
T KOG0018|consen 264 RGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEF 343 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777665543 110 12234444444 55677777777777777777
Q ss_pred HHHHHhhccCC-------cchhh---hhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002261 555 LAEIENLAANS-------DGHTQ---KMQDGHTLK-LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (946)
Q Consensus 555 ~~~l~~~~~~~-------~~~~~---Kl~~~~~~k-l~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~ 623 (946)
+.++....-.. ++... .|+++.... +.+|+.--.+.+-.+............++.+++.+...|.....
T Consensus 344 ekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~ 423 (1141)
T KOG0018|consen 344 EKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDK 423 (1141)
T ss_pred HHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766643211 11111 122222111 22222222234555555666666678899999999999988888
Q ss_pred HHHHHHHHHH
Q 002261 624 QKVQLQNKIK 633 (946)
Q Consensus 624 ~kv~L~~~~k 633 (946)
+...|.-.+.
T Consensus 424 ~~~~L~~~i~ 433 (1141)
T KOG0018|consen 424 RRNKLAAKIT 433 (1141)
T ss_pred HHHHHHHHHH
Confidence 8887766666
No 155
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.37 E-value=0.13 Score=59.72 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=26.4
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccccC
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g 100 (946)
...+..++..-++.|+.-||||||||+||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456778888899999999999999999943
No 156
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.26 E-value=23 Score=36.10 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 406 EVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (946)
Q Consensus 406 e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee 440 (946)
++..++.++..|+.+.+.-...+..+...+..+++
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555544443
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.01 E-value=0.098 Score=62.82 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=33.3
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||..+.. .+ +...|. .+..++...-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG-~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIG-AS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCC-Cc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 46999977732 23 333442 344455544456786 899999999999999
No 158
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.88 E-value=33 Score=37.35 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002261 798 IASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLN 877 (946)
Q Consensus 798 i~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~ 877 (946)
|+.|...-...+-++....++..-++.+.. ....+|.|---+|..+.+.+....|++.+.+.-....+.++.
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh--------~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELH--------HTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444445555555554 455567777778888888888888888887766666666555
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 878 DLVA-------LLKQSEAQRKELVKQQRMREQAVTIALA 909 (946)
Q Consensus 878 ~l~~-------~~r~~e~~~~~l~~~~~~~~~~~~~~~~ 909 (946)
...+ ++-++..+.--|..|+...........+
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 4444444444455555544444443333
No 159
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.84 E-value=28 Score=36.38 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002261 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIA 688 (946)
Q Consensus 609 ~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~ 688 (946)
.-+..+...=..+|....+.+.+++.+-.+|..++.-.+..+. ....++..+...++.-...|+-.+.-....
T Consensus 104 ~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~ 176 (207)
T PF05010_consen 104 EVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMK 176 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344455555556666667777777777888887776665443 344555566655555555555555555555
Q ss_pred HHHHHHHHH
Q 002261 689 TKRLKELLE 697 (946)
Q Consensus 689 ~k~Lke~le 697 (946)
+.-|.+.|+
T Consensus 177 ~~SLe~~Le 185 (207)
T PF05010_consen 177 VQSLEESLE 185 (207)
T ss_pred HHHHHHHHH
Confidence 556665555
No 160
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.77 E-value=0.097 Score=65.30 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHchhc
Q 002261 891 KELVKQQRMREQAVTIALASSAS 913 (946)
Q Consensus 891 ~~l~~~~~~~~~~~~~~~~~~~~ 913 (946)
.-|..++.++...+..+.+....
T Consensus 625 ~~L~~ql~e~~~~i~~lE~~~e~ 647 (713)
T PF05622_consen 625 QALKKQLQEKDRRIESLEKELEK 647 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33555665665555555555433
No 161
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.54 E-value=39 Score=37.68 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002261 617 EIQSIKAQKVQLQNKIKQEAEQFRQWKASREK---ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (946)
Q Consensus 617 ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~k---E~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lk 693 (946)
.+..+..+-..|-.++.-=+++|......+.+ =....+++..+....+.+|+.+ ...+++|.+....++-.+-
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE----~~~~k~k~e~~n~~l~~m~ 278 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKE----NQTWKSKWEKSNKALIEMA 278 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHH
Confidence 88888888888888888888888887765443 2345566666666666666632 3466677776665544443
No 162
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=50 Score=38.76 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT---LKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~---~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~ 611 (946)
.....+.+-...++.+|.+|.+++.... .....+-.+|. .-==.|.++++.|+.-|-+-.-+.-...++++.+
T Consensus 135 ~~~sd~~e~~~~~E~qR~rlr~elKe~K----fRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 135 KVHSDLKESNAAVEDQRRRLRDELKEYK----FREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEET 210 (772)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3444455555555666666666555432 12222222220 0011234445555555544444444445666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 002261 612 KRLQAEIQSIKAQKVQLQNKIKQE---AEQFRQWKASREKELLKLKK 655 (946)
Q Consensus 612 ~~L~~ei~~lk~~kv~L~~~~k~e---~~~~r~~~~~~~kE~~~Lkk 655 (946)
.-|+..+.+.-.-|+---++|-+- ...-|..+-.+.||+.+-..
T Consensus 211 elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n 257 (772)
T KOG0999|consen 211 ELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRN 257 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 666666666666666666666633 34455566666677766544
No 163
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.11 E-value=45 Score=37.74 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-CCcchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHH
Q 002261 539 ELEEEKRIVQQERDRLLAEIENLAA-NSDGHTQKMQDGHTLKLKALEAQILELKKKQ-ESQVELLKQKHKSDEAAKRLQA 616 (946)
Q Consensus 539 ~Le~ei~~l~kEr~~L~~~l~~~~~-~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~-~~~~~l~k~k~k~e~~~~~L~~ 616 (946)
-|=.+|..+.+|+.-|-..+..-.+ -.++...|++.-+..++ .||.- |.+.+ =-..+|.+-.+|++.+-..-+.
T Consensus 104 tLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~-~lEq~---leqeqef~vnKlm~ki~Klen~t~~kq~ 179 (552)
T KOG2129|consen 104 TLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKL-PLEQL---LEQEQEFFVNKLMNKIRKLENKTLLKQN 179 (552)
T ss_pred HHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhc-cHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHhhh
Confidence 5777888888887766555443211 02222333322221110 11111 11111 1245677777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHH-------------HHHHHHHHHHHHHHHHHh
Q 002261 617 EIQSIKAQKVQLQNKIKQEAEQF--RQWKASREKELLKLKKEGRKNEFE-------------RHKLEALNQRQKMVLQRK 681 (946)
Q Consensus 617 ei~~lk~~kv~L~~~~k~e~~~~--r~~~~~~~kE~~~Lkk~~rk~~~e-------------~~kle~~~~~q~~vl~rk 681 (946)
.+++|++.+|+|-..+.+|.+-. +.|+. +.+|..+.|-++.. |.+.-..+---...+++-
T Consensus 180 ~leQLRre~V~lentlEQEqEalvN~LwKr-----mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~h 254 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQEQEALVNSLWKR-----MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLH 254 (552)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHH
Confidence 89999999999988887665443 33432 22222222211111 111000011112233444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 682 TEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELT 761 (946)
Q Consensus 682 ~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~ 761 (946)
+.-+.+-+.||+-.|.+.+. .+ .++..++..+|.+...........|-.-++.|.+++..+.
T Consensus 255 i~~l~~EveRlrt~l~~Aqk---~~---------------~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQK---SY---------------QEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HH---------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555666666653221 11 1467888888888888888888888888999999998887
Q ss_pred HHHH
Q 002261 762 ILKQ 765 (946)
Q Consensus 762 ~l~~ 765 (946)
.-+.
T Consensus 317 Eses 320 (552)
T KOG2129|consen 317 ESES 320 (552)
T ss_pred hhhH
Confidence 6443
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.97 E-value=10 Score=43.23 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=21.2
Q ss_pred EEcCCHHHHHHHHHhcccccccccCCCCC-CCCCcEEEEEEEEEee
Q 002261 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (946)
Q Consensus 193 ~~v~s~~e~~~~l~~g~~~R~~~~t~~n~-~SSRSH~if~i~v~q~ 237 (946)
+...+..++..++..=+ ...+|. .+---|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efN------Gk~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFN------GKQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcC------CCcCCCCCccceeEEEEEEEEEE
Confidence 55667777777665421 111221 1224588888777654
No 165
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.96 E-value=0.27 Score=57.98 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=29.6
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 117 ~~~tfd~fv~-g~~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCccccccc-CCC-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 5788987542 222 3334433 3333333223455 4788999999999999
No 166
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.93 E-value=41 Score=37.10 Aligned_cols=135 Identities=25% Similarity=0.291 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002261 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (946)
Q Consensus 534 e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~ 613 (946)
++|+..|+++...|..|-..|...-.+. .+....|-.+.-+.+.+.-.+ .+.|...-.+.-+....
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dcv~QL~~An~q----------ia~LseELa~k~Ee~~r 231 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDCVKQLSEANQQ----------IASLSEELARKTEENRR 231 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHHHHHhhhcchh----------HHHHHHHHHHHHHHHHH
Confidence 3555555655555555555544332221 122233322222223333333 33344444445566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002261 614 LQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (946)
Q Consensus 614 L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lk 693 (946)
.++||..|-++.|+|+++.|+=...... +..-+...|.-.+.+..+++-|+ -|..|..+..-+.+
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEe----L~q~L~~ske~Q~~L~aEL~elq-----------dkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEE----LQQHLQASKESQRQLQAELQELQ-----------DKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 7888999999999998888843322221 12223333444455555555544 36668777777777
Q ss_pred HHHH
Q 002261 694 ELLE 697 (946)
Q Consensus 694 e~le 697 (946)
+.+-
T Consensus 297 EElk 300 (306)
T PF04849_consen 297 EELK 300 (306)
T ss_pred HHHH
Confidence 7665
No 167
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.79 E-value=0.13 Score=60.22 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=31.4
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.-+. +.+ +...|..+ ..++.. -..||. +|-||++|+||||.|
T Consensus 100 ~~~tFdnFv~-g~~-n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 100 PDYTFENFVV-GPG-NSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCccccccc-CCc-hHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 5799998884 223 44455432 233332 123675 999999999999998
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=88.73 E-value=0.19 Score=53.67 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=28.7
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhc---CC-CeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~---G~-n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.-+. . + +.. +...+..... ++ +..++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~-~-~-~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYP-G-A-NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCc-C-C-hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 4689999883 2 2 222 3333433332 22 246889999999999998
No 169
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.69 E-value=56 Score=41.36 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-ccH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 498 NTMDKELNELNKRLEQKESEMKLFGD-IDT-EALRHH-FGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~~k-~~~-~~~~~~-~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
.=|+.++.++..+|+..|..+..+.. +.. ...... .+.++.+|+.++...+.++.....++..+.
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888877542 111 111111 237788888888888877777666655543
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.68 E-value=72 Score=39.60 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
....++..++.++....+....+..+++.+...+-..+...++++..++.+..+....+.++-
T Consensus 227 ~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 227 DLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555555555555544444455555555555555555544444433
No 171
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.43 E-value=25 Score=33.97 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002261 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (946)
Q Consensus 590 Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~ 669 (946)
+.++...|+...+.-..+..++..++.+|..++.........+...-......+..+++|+
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~------------------- 107 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKEL------------------- 107 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------------
Confidence 3444444555555555555555555555555555544443333322222222222222222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 670 LNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 670 ~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.-++++++++..+|+=|-++||
T Consensus 108 ------~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 108 ------SELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777777777776
No 172
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.86 E-value=49 Score=36.70 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~ 632 (946)
..-.|.++|.. +++.--.-++|.-.|..+-=+|..|.+.|.+|.....++.+..
T Consensus 82 lk~~l~evEek---yrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 82 LKDSLAEVEEK---YRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHH---HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888877 8888888999999999999999999999999998866665444
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.64 E-value=0.2 Score=57.34 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=30.5
Q ss_pred ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 45 ~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
...|+||.... +.+ +...|. +...|.....+.--.||-||++|+||||.|
T Consensus 81 ~~~ytFdnFv~-g~~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVV-GPS-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheee-CCc-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 35799998774 333 333332 122222222333445789999999999999
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.55 E-value=40 Score=37.66 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 608 DEAAKRLQAEIQSIKAQKVQLQNKIK 633 (946)
Q Consensus 608 e~~~~~L~~ei~~lk~~kv~L~~~~k 633 (946)
+.++..+...|+....++..+...+.
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 175
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.53 E-value=0.39 Score=50.94 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=33.3
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCcccccc--CCCCCCCCcccHH
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQTGLIP 112 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~--g~~~~~~~~Glip 112 (946)
+.|++.++.----+.|+..|+|||||++||. -++.+....|=|-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIi 160 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHII 160 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceE
Confidence 5678888887888899999999999999993 2344555566443
No 176
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.93 E-value=0.76 Score=46.27 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred chhhHHhhhcC-CCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm 98 (946)
+..+++.+-.+ .+..++..|+||||||++|
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhh
Confidence 44455555544 4666777889999999999
No 177
>PRK08727 hypothetical protein; Validated
Probab=86.70 E-value=0.27 Score=52.56 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=26.8
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCC-eeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n-~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.-+. +.+ + .+. .+..+..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~-~~~-n--~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIA-APD-G--LLA-----QLQALAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccC-CcH-H--HHH-----HHHHHHhccCCCeEEEECCCCCCHHHHH
Confidence 3678888774 222 2 111 1122222332 35999999999999998
No 178
>PF13245 AAA_19: Part of AAA domain
Probab=86.36 E-value=0.38 Score=41.75 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.3
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444455 3333455899999999998
No 179
>PRK06526 transposase; Provisional
Probab=86.29 E-value=0.29 Score=52.94 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=14.3
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+.||++|+||||.+
T Consensus 101 lll~Gp~GtGKThLa 115 (254)
T PRK06526 101 VVFLGPPGTGKTHLA 115 (254)
T ss_pred EEEEeCCCCchHHHH
Confidence 789999999999998
No 180
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.06 E-value=0.45 Score=51.94 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=25.2
Q ss_pred ccccchhhHHhhhcCC---CeeEEEeccCCCCccccc
Q 002261 65 FGECVAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 65 ~~~~~~~lv~~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (946)
+.....+.+..++... .+.|+..|+||||||++|
T Consensus 108 ~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 108 ESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred CchhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 3344455566666655 777888899999999999
No 181
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.02 E-value=0.27 Score=57.11 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=28.9
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~-g~~-n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCccccccc-CCc-HHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 5789988442 222 3334432 3333333111244 4788999999999998
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.90 E-value=22 Score=40.72 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 002261 527 EALRHHFGKKI---MELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 527 ~~~~~~~e~ki---~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
+.+++.|+.++ .+|+.+...++++++-++..+..
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q 386 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQ 386 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 35555555443 33444445555555555444443
No 183
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.87 E-value=0.35 Score=51.72 Aligned_cols=45 Identities=16% Similarity=0.406 Sum_probs=29.0
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhh-cCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l-~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.-+. . + +...+. .+..+. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~-~-~-n~~a~~-----~l~~~~~~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYP-G-D-NDSLLA-----ALQNALRQEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCcccccc-C-c-cHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 5688887773 2 3 344442 233332 222347899999999999999
No 184
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=85.79 E-value=66 Score=36.08 Aligned_cols=261 Identities=24% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---------------------ccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 002261 500 MDKELNELNKRLEQKESEMKLFGD---------------------IDTEALRHHFGKKIMELEEEKR----IVQQERDRL 554 (946)
Q Consensus 500 l~~el~~L~~~Le~kE~~~~~~~k---------------------~~~~~~~~~~e~ki~~Le~ei~----~l~kEr~~L 554 (946)
|..+++.|..+++.-....+.... .+...|-...+++|.+|..+.. +|..|++.|
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrL 375 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRL 375 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 002261 555 LAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ--LQNKI 632 (946)
Q Consensus 555 ~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~--L~~~~ 632 (946)
+++-... ...-+..-.-..-.+|+.+ |.+-+--......++++.-+++..++.|++-|..+-.+ |
T Consensus 376 LAEETAA------TiSAIEAMKnAhrEEmeRE---LeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCL---- 442 (593)
T KOG4807|consen 376 LAEETAA------TISAIEAMKNAHREEMERE---LEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCL---- 442 (593)
T ss_pred hhhhhhh------hhHHHHHHHHHHHHHHHHH---HHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCC
Q 002261 633 KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTG 712 (946)
Q Consensus 633 k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~ 712 (946)
.....-.+.+-|-..|+...|..+..+..-+..+. -+++-+-+|+-.+- ..+.|
T Consensus 443 -----EnahLaqalEaerqaLRqCQrEnQELnaHNQELnn-----------RLaaEItrLRtllt----------gdGgG 496 (593)
T KOG4807|consen 443 -----ENAHLAQALEAERQALRQCQRENQELNAHNQELNN-----------RLAAEITRLRTLLT----------GDGGG 496 (593)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----------HHHHHHHHHHHHhc----------cCCCC
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcCCCCCccccccCChh
Q 002261 713 YTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPN 792 (946)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~~~~~~~~~~~~~~~l~~~ 792 (946)
+..|-++.+. .=||+++.++.+.+-.| |-+|+..|+..+.....
T Consensus 497 tGsplaqgkd-------ayELEVLLRVKEsEiQY---------LKqEissLkDELQtalr-------------------- 540 (593)
T KOG4807|consen 497 TGSPLAQGKD-------AYELEVLLRVKESEIQY---------LKQEISSLKDELQTALR-------------------- 540 (593)
T ss_pred CCCccccCcc-------hhhHHHHHHhhHHHHHH---------HHHHHHHHHHHHHHHHh--------------------
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002261 793 ARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEI 872 (946)
Q Consensus 793 ~~~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~ 872 (946)
+....+.-.++.=..++-+..+-. |......++|+-+
T Consensus 541 -----------DKkyaSdKYkDiYtELSiaKakad--------------------------------cdIsrLKEqLkaA 577 (593)
T KOG4807|consen 541 -----------DKKYASDKYKDIYTELSIAKAKAD--------------------------------CDISRLKEQLKAA 577 (593)
T ss_pred -----------hhhccccchhHHHHHHHHHHHhhh--------------------------------ccHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002261 873 KEQLND 878 (946)
Q Consensus 873 ~~~~~~ 878 (946)
.+.+.+
T Consensus 578 teALgE 583 (593)
T KOG4807|consen 578 TEALGE 583 (593)
T ss_pred HHHhcc
No 185
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.74 E-value=43 Score=36.09 Aligned_cols=92 Identities=20% Similarity=0.298 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (946)
Q Consensus 574 ~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~L 653 (946)
.+++.+|.+++.+ .++.+....+-......++++.+.++.+-..|.+... .+.++..+++.......+|-.+|
T Consensus 8 ~Ele~rL~q~eee---~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~----eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 8 QELEERLRQMEEE---MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQ----EAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555 3333333333333333444444444444443333321 22344444555555555555556
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 002261 654 KKEGRKNEFERHKLEALNQ 672 (946)
Q Consensus 654 kk~~rk~~~e~~kle~~~~ 672 (946)
..+-+..+..+.+|.....
T Consensus 81 e~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666664444
No 186
>PRK12377 putative replication protein; Provisional
Probab=85.69 E-value=0.31 Score=52.49 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=32.0
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+||........ +..++. .+..++..+..|. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~-~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDG-QRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChh-HHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 3478776533222 333443 3556667666554 46788999999999999
No 187
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.38 E-value=0.61 Score=52.91 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=24.3
Q ss_pred cchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 68 ~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
...|.+..++.--.+.|+..|+||||||+||
T Consensus 109 g~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 109 GLPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 3446666666545678999999999999999
No 188
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.24 E-value=0.3 Score=57.44 Aligned_cols=48 Identities=29% Similarity=0.435 Sum_probs=30.1
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|+||..+. +.+ +...|. .+..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~-g~~-n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVI-GSS-NEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccC-CCc-HHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 599998774 333 444443 23333332111345 4789999999999998
No 189
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.18 E-value=1.4e+02 Score=39.26 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002261 670 LNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (946)
Q Consensus 670 ~~~~q~~vl~rk~eE~~a~~k~Lke~le~ 698 (946)
..+.|...++.++...++....|++.+-.
T Consensus 205 L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 205 LARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777666666666666643
No 190
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.16 E-value=50 Score=34.19 Aligned_cols=51 Identities=29% Similarity=0.341 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 647 EKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 647 ~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.+|.--|+.-..+....+.+.+.....--.++.+-.+|+-....+|+..-+
T Consensus 32 ~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 32 RKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777778888877776777888888888877777775544
No 191
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.87 E-value=87 Score=36.71 Aligned_cols=95 Identities=9% Similarity=0.099 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---Ccchh
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGD-ID---TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHT 569 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k-~~---~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~---~~~~~ 569 (946)
..-++.++.++..+|+..|..+..|.. ++ +.........++.+|..++...+.++......+...... ..-..
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIA 252 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhc
Confidence 344677788888888888887777542 21 111111122567778777777777766665555432110 00001
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 002261 570 QKMQDGHTLKLKALEAQILELK 591 (946)
Q Consensus 570 ~Kl~~~~~~kl~~lE~~~~~Lk 591 (946)
...-..+..++.+++.++..|.
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~ 274 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELS 274 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 1122334556666666655554
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.57 E-value=0.42 Score=50.42 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=29.7
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.... + . +..++.. +..+ +..+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~-l~~~---~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA-LRQL---AAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH-HHHH---HhcCCCCeEEEECCCCCCHHHHH
Confidence 4578887773 2 2 2333322 1222 23566778999999999999998
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.55 E-value=0.5 Score=45.17 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=20.2
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+...+.......|+.+|++|+|||+++
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33444444434557889999999999877
No 194
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.44 E-value=75 Score=37.95 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 582 ~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
+|=.+++.||-+... |+|.+...|++.+.-++.|+++.+.||..
T Consensus 178 DLmaevSeLKLklta---lEkeq~e~E~K~R~se~l~qevn~~kv~e 221 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTA---LEKEQNETEKKLRLSENLMQEVNQSKVGE 221 (861)
T ss_pred HHHHHHHHhHHHHHH---HHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555554433 67777777888888888888877776665
No 195
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.39 E-value=1.2 Score=50.90 Aligned_cols=28 Identities=32% Similarity=0.652 Sum_probs=20.5
Q ss_pred hhHHhhhcCCCee-EEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNAT-VLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~t-i~ayGqtgSGKT~Tm 98 (946)
.++..++.|.-.+ ++.||.||+|||.|+
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3445555554433 999999999999988
No 196
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.11 E-value=67 Score=34.76 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002261 627 QLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (946)
Q Consensus 627 ~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~ 672 (946)
.++.+.+++-......+...+.++.+|..-..+++..+..|+.+..
T Consensus 148 ~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~ 193 (265)
T COG3883 148 KILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKA 193 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666777777777777777666666666666665444
No 197
>PRK08116 hypothetical protein; Validated
Probab=84.06 E-value=0.34 Score=52.96 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=33.3
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhc--CCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~--G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++||.... +. .+...|. .+...++.+.. +.|..++-||++|+||||.+
T Consensus 80 ~~~tFdnf~~-~~-~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-DK-GSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-Ch-HHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 3578887653 22 2333443 35666666643 34567999999999999998
No 198
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.70 E-value=1e+02 Score=36.65 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
.++..|++.+..|+.+...+.+-+..+
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~ 285 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQM 285 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555556666665555555544444
No 199
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.35 E-value=60 Score=33.63 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~ 557 (946)
-+|.+|..++..++.+.+.+..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~E 34 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKE 34 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444433
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.19 E-value=10 Score=39.19 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002261 796 ERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQ 875 (946)
Q Consensus 796 ~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~ 875 (946)
..+..|+.++..+.....+++.++..+...+. ..-..+.+....+..|-.........+.+...+|++....
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~--------~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQ--------ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766666666666666665554 3333444555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 876 LNDLVALLKQSEAQRKELVKQQRMREQ 902 (946)
Q Consensus 876 ~~~l~~~~r~~e~~~~~l~~~~~~~~~ 902 (946)
+..+.+++--+..+...+...+...+.
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444433333
No 201
>PRK10436 hypothetical protein; Provisional
Probab=83.14 E-value=0.55 Score=55.22 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=23.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCcccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (946)
.+..++..-++.|+..|+||||||+||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3555666778999999999999999993
No 202
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.04 E-value=0.5 Score=50.10 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=30.1
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+||.+++. . +..++ ..+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~-~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELV-ARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHH-HHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 57899998832 2 22332 223333331 234567899999999999988
No 203
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.87 E-value=64 Score=33.62 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 662 FERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 662 ~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
..+...+..-.-...+|.||+..+......-..+|.
T Consensus 132 ~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 132 SAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445544555668888888877766554444443
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=82.76 E-value=0.48 Score=50.94 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=29.8
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
...+||..... ...+..++.. +...++.+..|+ ..++.||++|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 35678765422 2223334333 334444444443 36889999999999998
No 205
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.74 E-value=0.57 Score=54.11 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=19.8
Q ss_pred hHHhhhc-CCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~-G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++. +....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3333443 44567899999999999988
No 206
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.72 E-value=0.62 Score=55.30 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=23.0
Q ss_pred hHHhhhcCCCeeEEEeccCCCCcccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (946)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667777889999999999999994
No 207
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.67 E-value=1.3e+02 Score=37.17 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 658 RKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 658 rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
...+.++..+. +++.-..|+.-++++...+.|+.=+.|.
T Consensus 900 ~nl~lki~s~k-qeqee~~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 900 ENLSLKIVSNK-QEQEELLVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred ccchhcccchh-hhHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 34444555555 4444456777777777666666655554
No 208
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.66 E-value=22 Score=39.75 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
..+.++++++..++.|.+.+..++..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEE 68 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444443
No 209
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.60 E-value=48 Score=41.46 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 002261 671 NQRQKMVLQRKTEEAAIATKRLKEL 695 (946)
Q Consensus 671 ~~~q~~vl~rk~eE~~a~~k~Lke~ 695 (946)
+..=..+|+.-.++...+++++|..
T Consensus 687 ~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 687 KRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888888888888888754
No 210
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.46 E-value=0.57 Score=56.75 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=23.7
Q ss_pred hHHhhhcCCCeeEEEeccCCCCcccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (946)
.+..++..-++.|+..|+||||||+||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566667778999999999999999993
No 211
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.38 E-value=0.55 Score=48.80 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.1
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
++.|+..|+||||||++|
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999999
No 212
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.22 E-value=1.1e+02 Score=36.00 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 498 NTMDKELNELNKRLEQKESEMKLFG---------------DIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~~---------------k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
.+++++|..+.--|+.+.+++-+++ ...+...+++++..++..+++....+.+-++++.-+...+
T Consensus 376 lk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 376 LKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544443322 2345677888888888888888888888888887666554
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 563 ANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----QVELLKQKHKSD-----EAAKRLQAEIQSIKAQKVQLQNKI 632 (946)
Q Consensus 563 ~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~-----~~~l~k~k~k~e-----~~~~~L~~ei~~lk~~kv~L~~~~ 632 (946)
..+++.-.|+.+- +....+--+.+..|+.+++. .+.++...++.+ .+.-...+.|..|.+.|-.| ..+
T Consensus 456 neKnDkdkkiael-er~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel-~~t 533 (654)
T KOG4809|consen 456 NEKNDKDKKIAEL-ERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQEL-DAT 533 (654)
T ss_pred hhhccccchhhhc-CchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhCh-hhh
Confidence 4444433333221 11122222222222211111 111111111111 11112334455555554443 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 633 KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 633 k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
+.-..--++..+.++.-+.+|+-+.|+.-.++-.+.
T Consensus 534 karl~stqqslaEke~HL~nLr~errk~Lee~lemK 569 (654)
T KOG4809|consen 534 KARLASTQQSLAEKEAHLANLRIERRKQLEEILEMK 569 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455566777777788888888777766655554
No 213
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=82.04 E-value=0.88 Score=48.43 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=20.9
Q ss_pred HHhhhcCCCe-eEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNA-TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~-ti~ayGqtgSGKT~Tm 98 (946)
...++.|..+ .|+.||..|+|||.++
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 3667788765 3777999999998887
No 214
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=82.02 E-value=0.73 Score=52.63 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=20.7
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++++.++. .++.|+..|+||||||+||
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444443 5677889999999999999
No 215
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.88 E-value=0.75 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..++.--++.|+..|+||||||+||
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 33444445789999999999999999
No 216
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.74 E-value=0.59 Score=44.11 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.8
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 578999999999999
No 217
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.60 E-value=0.5 Score=58.08 Aligned_cols=92 Identities=25% Similarity=0.424 Sum_probs=53.5
Q ss_pred EEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHH----HHHHHHHHHHH
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNKIE 123 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glip----r~~~~lF~~i~ 123 (946)
|....=|.|.+. |..- +..++..+-.|.... +.+|.|||||||||..-......+-||- .....|+..+.
T Consensus 2 f~~~~~~~~~~~-Q~~a----i~~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKA----IAKLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHH----HHHHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444445666655 4333 345666666664333 3789999999999943211111122221 24456666665
Q ss_pred hccccceEEEEeehhhhhhHHH
Q 002261 124 TLRHQMEFQLHVSFIEILKEEV 145 (946)
Q Consensus 124 ~~~~~~~~~v~vS~~EIy~e~v 145 (946)
..-+...+...||||..|.-+.
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred HhCCCCeEEEEeeecccCCccc
Confidence 5444555788899998886553
No 218
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.13 E-value=2e+02 Score=38.03 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchh
Q 002261 838 LRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIK-----EQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSA 912 (946)
Q Consensus 838 ~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~-----~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~ 912 (946)
.+++.++.-.+.++-+......+++.....|+-+.. +....|......+-.+...+..+...++.++..+.+.+.
T Consensus 1000 ~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1000 RERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666666666666666655555544444 455555555566667777788888999999988888887
Q ss_pred c--CcchhhhhHHHHHHHhhcC
Q 002261 913 S--VRFSAQHFMFTWLLILHTA 932 (946)
Q Consensus 913 ~--~~~~~~~~~~~~~~~~~~~ 932 (946)
. ....++.|.+-|++..-|.
T Consensus 1080 ~~~~kd~~~nyr~~~ie~~tt~ 1101 (1294)
T KOG0962|consen 1080 EKDFKDAEKNYRKALIELKTTE 1101 (1294)
T ss_pred hhhhccHHHHHHHHHHHHHHHH
Confidence 4 2445555666666644443
No 219
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=81.09 E-value=0.55 Score=44.68 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.3
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999988
No 220
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=80.96 E-value=2.5 Score=45.31 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred EcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCcc
Q 002261 194 AVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSER 273 (946)
Q Consensus 194 ~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr 273 (946)
.+.+++++..++..... +..++ ...-|.-++.|.|.... +-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~-~~~~~-----~~~~s~~~i~l~i~~p~---------------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETD-RVTGT-----NKGISPVPINLRVYSPH---------------------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHH-HhcCC-----CCcccCcceEEEEeCCC---------------------CCceEEEeCCCccc
Confidence 34678888888776432 12111 12345667778776321 13599999999964
Q ss_pred c
Q 002261 274 A 274 (946)
Q Consensus 274 ~ 274 (946)
.
T Consensus 138 ~ 138 (240)
T smart00053 138 V 138 (240)
T ss_pred c
Confidence 3
No 221
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.95 E-value=0.58 Score=53.39 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=20.8
Q ss_pred hhHHhhhc-CCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~-G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..++. +....++.||++|+|||+++
T Consensus 29 ~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 29 KALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34444444 45568999999999999987
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.71 E-value=63 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
.-|.++..++..|..||....++|..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777776665
No 223
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=80.61 E-value=0.56 Score=52.08 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555654 456788899999999998
No 224
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=1.6e+02 Score=36.45 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 002261 677 VLQRKTEEAAIATKRLKELLEA 698 (946)
Q Consensus 677 vl~rk~eE~~a~~k~Lke~le~ 698 (946)
-.-|+++++..+...|+...+.
T Consensus 427 ~~~r~~~~~~~~~e~Lqk~~~~ 448 (698)
T KOG0978|consen 427 DAERQIRQVEELSEELQKKEKN 448 (698)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776663
No 225
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.31 E-value=0.72 Score=48.94 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=13.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567799999999999
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.98 E-value=0.75 Score=43.37 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 227
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=79.91 E-value=0.94 Score=47.01 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|..++.+.+..++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3566676665555666899999999999
No 228
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.86 E-value=1.3e+02 Score=37.71 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=14.4
Q ss_pred EeeeeeeecCCCccccccCCCccc
Q 002261 260 CAKLHLVDLAGSERAKRTGSDGLR 283 (946)
Q Consensus 260 ~s~l~~VDLAGsEr~~~t~~~g~r 283 (946)
+.--.+.|-...+|.--+.+.|..
T Consensus 367 cpI~L~~Dp~~~~ryy~~H~~GvH 390 (717)
T PF10168_consen 367 CPIRLHRDPLNPDRYYCYHNAGVH 390 (717)
T ss_pred cceEEEecCCCCceEEEEecCccE
Confidence 333355788777777555555543
No 229
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.67 E-value=33 Score=40.85 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=8.7
Q ss_pred ccHHHHHHHHHHHHHh
Q 002261 109 GLIPQVMNALFNKIET 124 (946)
Q Consensus 109 Glipr~~~~lF~~i~~ 124 (946)
|.|.++...|=..+..
T Consensus 164 ~av~~~~reIee~L~~ 179 (652)
T COG2433 164 GAVKRVVREIEEKLDE 179 (652)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555555555543
No 230
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=79.59 E-value=0.96 Score=45.01 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=20.0
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 4555666766 778899999999988
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=79.51 E-value=0.92 Score=50.99 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=21.7
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
...|+.+-.+. -.|+-||+||+||||.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 34666665444 56999999999999988
No 232
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.48 E-value=1.8e+02 Score=36.53 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002261 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSD 608 (946)
Q Consensus 529 ~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e 608 (946)
+..+|+..+..|+-+...-+.+.++-..+-+ +|+.+ +.++...=.++.+.+.-..++++.---.+
T Consensus 359 ~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-----------qLr~e----laql~a~r~q~eka~~~~ee~e~~~l~~e 423 (980)
T KOG0980|consen 359 RIEQYENQLLALEGELQEQQREAQENREEQE-----------QLRNE----LAQLLASRTQLEKAQVLVEEAENKALAAE 423 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445666666666665555544444333221 22222 22222222234444433444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002261 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKA---SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (946)
Q Consensus 609 ~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~---~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~ 685 (946)
.+...+..-+.++.+.++.|.+|..+=.++....+. ..++++..|-..-.+.+. +.-++-+|+|+.
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~-----------~~~~~~~K~e~~ 492 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQR-----------AAGRAETKTESQ 492 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhHHH
Confidence 566666666666666666666665544433333322 233333333333333333 334444566665
Q ss_pred HHHHHHHHHHHH
Q 002261 686 AIATKRLKELLE 697 (946)
Q Consensus 686 ~a~~k~Lke~le 697 (946)
..+...++..|.
T Consensus 493 ~~~le~l~~El~ 504 (980)
T KOG0980|consen 493 AKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 233
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.64 E-value=95 Score=32.90 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 002261 570 QKMQDGHTLKLKALEAQILELK 591 (946)
Q Consensus 570 ~Kl~~~~~~kl~~lE~~~~~Lk 591 (946)
..+..+.+..|.++|.+..+|.
T Consensus 44 rE~EaelesqL~q~etrnrdl~ 65 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLE 65 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666644443
No 234
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.42 E-value=2.1e+02 Score=36.76 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002261 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDL 879 (946)
Q Consensus 840 sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l 879 (946)
+..+-+..+..|.........+-.+...+|.+...++..+
T Consensus 438 ~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 438 SYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444444433
No 235
>PRK08181 transposase; Validated
Probab=78.41 E-value=0.83 Score=49.84 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.4
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.| |+-||++|+||||.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa 123 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLA 123 (269)
T ss_pred cCce--EEEEecCCCcHHHHH
Confidence 4555 899999999999998
No 236
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=78.33 E-value=1.1 Score=48.82 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++..-.+.|+..|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 445556555667888899999999999
No 237
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.85 E-value=1.1e+02 Score=33.06 Aligned_cols=105 Identities=26% Similarity=0.278 Sum_probs=69.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHH
Q 002261 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWL 729 (946)
Q Consensus 650 ~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (946)
+..|+|+....++.|-.|++.-++|+.-.--..-|..+.-++..-..|.-- .-++.+.||
T Consensus 27 ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~--------------------~lek~rqKl 86 (307)
T PF10481_consen 27 LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCE--------------------NLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH--------------------HHHHHHHHh
Confidence 666777778888888888888887765555555556666666655555211 124678889
Q ss_pred HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 002261 730 EHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGH 774 (946)
Q Consensus 730 ~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~~ 774 (946)
.+++-+.- .+.=++..+..-...=..|+.++..++..+|-...+.
T Consensus 87 shdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 87 SHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887755 5555566666666666677777777776666555443
No 238
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.68 E-value=69 Score=33.97 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 494 ALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIE 559 (946)
Q Consensus 494 ~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~ 559 (946)
..-+..|...+.+|..+++-..+.+-- +++++.+-+++|..|.++...+...+.
T Consensus 256 kssq~eL~dfm~eLdedVEgmqsTili------------LQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 256 KSSQEELYDFMEELDEDVEGMQSTILI------------LQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHhHHHHHHHHHHHHHHHhcchhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555666666666666554443322 235666666777777777666555443
No 239
>PF12846 AAA_10: AAA-like domain
Probab=77.56 E-value=0.94 Score=49.74 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=16.2
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567889999999999999
No 240
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.49 E-value=67 Score=30.55 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=29.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 372 VNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRR 435 (946)
Q Consensus 372 vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~ 435 (946)
++..+....+.+|...|..+..++.. ++.++..|..+.+.+..++-.....+
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~------------l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELAS------------LQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666665555432 55556666666666666655544443
No 241
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.10 E-value=79 Score=31.16 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L 614 (946)
.....|..++..+..+...+...+..+ ..++.+++.++..+.. ....+.+.-+.....++.+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL---------------~~~~~~~ere~~~~~~---~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERL---------------KEQLEELERELASAEE---KERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 345666667777666666665554433 2344445555332222 2233444444555555555
Q ss_pred HHHHHHHHHH
Q 002261 615 QAEIQSIKAQ 624 (946)
Q Consensus 615 ~~ei~~lk~~ 624 (946)
.+++..++..
T Consensus 114 kee~~klk~~ 123 (151)
T PF11559_consen 114 KEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHH
Confidence 5655555544
No 242
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=76.78 E-value=1.3e+02 Score=33.42 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCc-chhhhhhh
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA---NSD-GHTQKMQD 574 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~---~~~-~~~~Kl~~ 574 (946)
+..++-.+.-..|+.....++.+.........-...+.|.++.+.|..++.+.+.|...+..... ... .....+-.
T Consensus 45 QAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n 124 (301)
T PF06120_consen 45 QARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIIN 124 (301)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Confidence 33444455555666666666665554444555555566666666666666666666665543211 111 01011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002261 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (946)
Q Consensus 575 ~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~ 629 (946)
.+ ..+.+....+..+. .+.........+...++...+..|..+..+++.++
T Consensus 125 ~~-~~~~~~t~~la~~t---~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 125 HL-MSQADATRKLAEAT---RELAVAQERLEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12333333322222 22222222234445566677777788888877764
No 243
>PF15294 Leu_zip: Leucine zipper
Probab=76.69 E-value=83 Score=34.32 Aligned_cols=142 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCcchhhhhhhHHHHHH
Q 002261 507 LNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA------NSDGHTQKMQDGHTLKL 580 (946)
Q Consensus 507 L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~------~~~~~~~Kl~~~~~~kl 580 (946)
|+..|..+.++-.++- .++..++......-.|+..+..++..+.. ...+..-+- +.+
T Consensus 130 l~kEi~rLq~EN~kLk------------~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~-----q~l 192 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLK------------ERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKA-----QDL 192 (278)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc-----cch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002261 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (946)
Q Consensus 581 ~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~ 660 (946)
.+||..+..++ .++.+.-...+...+.|.+.+..-++.-..+ -.+|.-.....
T Consensus 193 ~dLE~k~a~lK------~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~---------------------QeqL~~aekeL 245 (278)
T PF15294_consen 193 SDLENKMAALK------SELEKALQDKESQQKALEETLQSCKHELLRV---------------------QEQLSLAEKEL 245 (278)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------chhhhcchhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002261 661 EFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (946)
Q Consensus 661 ~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lk 693 (946)
+...+. -+.+..-+.+|.+|-+++.+.+++|.
T Consensus 246 ekKfqq-T~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 246 EKKFQQ-TAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHhCc-cHHHHHhHHHHHhccHHHHHHHHHhc
No 244
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=76.63 E-value=1.7 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=18.4
Q ss_pred hhhcCC--CeeEEEeccCCCCccccc
Q 002261 75 GLFQGY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 75 ~~l~G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.+++-+ |-.|+.+|+||||||+-+
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccc
Confidence 344433 557888999999999988
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.31 E-value=2.9 Score=52.13 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=21.3
Q ss_pred hhhHHhhhc--CCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~--G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..++. |-+.+||.||+||+|||.|+
T Consensus 768 asfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 768 HGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 344555554 44557789999999999998
No 246
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.02 E-value=77 Score=32.47 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 002261 578 LKLKALEAQ 586 (946)
Q Consensus 578 ~kl~~lE~~ 586 (946)
.++..++..
T Consensus 130 ~~l~~l~~~ 138 (191)
T PF04156_consen 130 ERLDSLDES 138 (191)
T ss_pred HHHHHHHHH
Confidence 344444444
No 247
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.88 E-value=1.2 Score=52.43 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=30.5
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhh--hcC--CCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~--l~G--~n~ti~ayGqtgSGKT~Tm 98 (946)
..||||.-+. +.+ +...|. .+..+.... ..| ||. +|-||++|+||||.+
T Consensus 106 ~~~tFdnFv~-g~~-N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 106 PLMTFANFLV-TPE-NDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred ccccccceee-CCc-HHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 5799998874 223 333332 234443322 223 454 678999999999998
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.46 E-value=1.1 Score=46.51 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999999
No 249
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=75.16 E-value=1.4e+02 Score=32.93 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002261 630 NKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (946)
Q Consensus 630 ~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~ 660 (946)
+.|++.+..++........++.+||.+--..
T Consensus 51 rE~~e~~~elr~~rdeineev~elK~kR~ei 81 (294)
T COG1340 51 RELREKAQELREERDEINEEVQELKEKRDEI 81 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666777776654443
No 250
>PRK08939 primosomal protein DnaI; Reviewed
Probab=75.10 E-value=0.98 Score=50.32 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=28.6
Q ss_pred EEeceEecCCCCCccccccccchhhHHhhhcC-CCeeEEEeccCCCCcccccc
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm~ 99 (946)
.+||.+-.... ....++.. +...++....| ....++-||++|+||||.+.
T Consensus 124 atf~~~~~~~~-~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDR-DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCCh-HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45555442211 23334432 34455544433 23468999999999999993
No 251
>PF13479 AAA_24: AAA domain
Probab=75.02 E-value=1.4 Score=46.45 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=16.8
Q ss_pred CeeEEEeccCCCCccccccC
Q 002261 81 NATVLAYGQTGSGKTYTMGT 100 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g 100 (946)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999998843
No 252
>PRK06921 hypothetical protein; Provisional
Probab=74.55 E-value=1.1 Score=49.03 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=16.0
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+||||.+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456889999999999998
No 253
>PF13514 AAA_27: AAA domain
Probab=74.48 E-value=3e+02 Score=36.61 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccccchhhHh
Q 002261 380 DMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLK 459 (946)
Q Consensus 380 ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~~~~~~~k~~eLe 459 (946)
.|+.+..++..++.++.... .....+..+...+..++.+...+..++.........++...... .....+..++
T Consensus 151 ~in~~l~~l~e~~~~l~~~~--~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~----p~~~~~~~l~ 224 (1111)
T PF13514_consen 151 EINQALKELKELERELREAE--VRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAW----PLLAELQQLE 224 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHH
Confidence 45555566666666663321 13456777777777788888888887777777666554422111 1234455566
Q ss_pred hhhcc
Q 002261 460 RGFQS 464 (946)
Q Consensus 460 ~~l~~ 464 (946)
..+..
T Consensus 225 ~~l~~ 229 (1111)
T PF13514_consen 225 AELAE 229 (1111)
T ss_pred HHHHh
Confidence 55543
No 254
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=74.47 E-value=1.3 Score=46.41 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.6
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+...+-.|.+.+|+.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34445455677889999999999999988
No 255
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.39 E-value=1.1 Score=50.30 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=19.6
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.+. ..|+..|.||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555432 35788899999999999
No 256
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.37 E-value=73 Score=29.43 Aligned_cols=56 Identities=34% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (946)
Q Consensus 575 ~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k 633 (946)
++..++..|+..|.++|-.++ +|.+.+..++..+..|+.+-...-+....|+.++-
T Consensus 13 el~n~La~Le~slE~~K~S~~---eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQG---ELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666444444433 35666666666666666555555555555544444
No 257
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.25 E-value=1.5 Score=49.05 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.9
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.+ ...|+..|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455556555 456677799999999887
No 258
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=74.24 E-value=4.3 Score=38.80 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=38.8
Q ss_pred chhhHHhhhcCCC---eeEEEe-ccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEE-----Eeehhh
Q 002261 69 VAPLVDGLFQGYN---ATVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQL-----HVSFIE 139 (946)
Q Consensus 69 ~~~lv~~~l~G~n---~ti~ay-GqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v-----~vS~~E 139 (946)
+...|.+.+...| ..|+++ |+||+||||+- ..+.+.||..--...--..|.. .-+.+.
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~-------------~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~ 103 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS-------------RLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVD 103 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH-------------HHHHHHHHhcccCCCceeeecccccCCCchHHH
Confidence 3344444443322 346655 99999999986 5567777764322110011111 124577
Q ss_pred hhhHHHHHhhc
Q 002261 140 ILKEEVRDLLD 150 (946)
Q Consensus 140 Iy~e~v~DLL~ 150 (946)
-|.+++.+.+.
T Consensus 104 ~Yk~~L~~~I~ 114 (127)
T PF06309_consen 104 EYKEQLKSWIR 114 (127)
T ss_pred HHHHHHHHHHH
Confidence 88888777764
No 259
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=74.12 E-value=1.3 Score=41.49 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999887
No 260
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=74.10 E-value=1.7e+02 Score=33.68 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=9.7
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 002261 679 QRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 679 ~rk~eE~~a~~k~Lke~le 697 (946)
+..+.++.+....++..++
T Consensus 252 ~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 252 QARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555554
No 261
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.08 E-value=2.5e+02 Score=35.51 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=13.4
Q ss_pred hhhhhhhHHHHHHHHHhhh
Q 002261 288 IHINRGLLALGNVISALGD 306 (946)
Q Consensus 288 ~~IN~sL~~L~~vi~~L~~ 306 (946)
..|=+|=..+..||..|.-
T Consensus 78 ieiL~Sr~v~~~VV~~L~L 96 (754)
T TIGR01005 78 VEILSSNEILKQVVDKLGL 96 (754)
T ss_pred HHHHccHHHHHHHHHHcCC
Confidence 3455577788888888864
No 262
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=74.03 E-value=1.3 Score=41.92 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.6
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+-||++|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999887
No 263
>PF14992 TMCO5: TMCO5 family
Probab=73.79 E-value=1.4e+02 Score=32.54 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhh
Q 002261 500 MDKELNELNKRLEQKESEMKLFGDID-----TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQD 574 (946)
Q Consensus 500 l~~el~~L~~~Le~kE~~~~~~~k~~-----~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~ 574 (946)
+=..+++-...+..++.++.+..+.. .......-++.+.+|+.+..+|+++...+...+..+....+....++.-
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~ 102 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQC 102 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCC
Confidence 33344444444555555555433321 1111122335577888888888888887766656555443333333322
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 575 G---HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELL 651 (946)
Q Consensus 575 ~---~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~ 651 (946)
+ ....++..+.. |++.......+++.-.+.+.... ++.++-.....-++++|+.. +..+. +||+.
T Consensus 103 e~~~~~~~lq~sk~~---lqql~~~~~~qE~ei~kve~d~~----~v~~l~eDq~~~i~klkE~L---~rmE~--ekE~~ 170 (280)
T PF14992_consen 103 EDPQLSQSLQFSKNK---LQQLLESCASQEKEIAKVEDDYQ----QVHQLCEDQANEIKKLKEKL---RRMEE--EKEML 170 (280)
T ss_pred CccchhcccHHhhhh---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHH
Confidence 2 12334444433 33333333333333333332111 12233333333444444433 22222 66666
Q ss_pred HHHHHhhhhHHH
Q 002261 652 KLKKEGRKNEFE 663 (946)
Q Consensus 652 ~Lkk~~rk~~~e 663 (946)
.|.++-++.+..
T Consensus 171 lLe~el~k~q~~ 182 (280)
T PF14992_consen 171 LLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHhch
Confidence 666665555443
No 264
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.73 E-value=1.2e+02 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 537 IMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
|.++..+...+++-+..+..++..+
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~ 27 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESL 27 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555543
No 265
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=73.58 E-value=1.4e+02 Score=32.32 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002261 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK---LKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~k---l~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~ 613 (946)
+.+|.+....|.+....|...+.+++..+-...+++-..|..- +.-|+.. .-++.+....+|..++.+.+.++..
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~--~~~~l~~ak~eLqe~eek~e~~l~~ 85 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYS--NHKQLQQAKAELQEWEEKEESKLSK 85 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555566666666666666666554444444444444221 2222221 1123444456677777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 614 LQAEIQSIKAQKVQLQ 629 (946)
Q Consensus 614 L~~ei~~lk~~kv~L~ 629 (946)
|+.++.++.+......
T Consensus 86 Lq~ql~~l~akI~k~~ 101 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQ 101 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776644443
No 266
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.54 E-value=1.8e+02 Score=33.58 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=14.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHhhHHHHHHH
Q 002261 799 ASLENMLNMSSKALVEMASQLSEAEERER 827 (946)
Q Consensus 799 ~~Le~~~~~~~~~l~~l~~~~~e~~~~~~ 827 (946)
.++..++.....++..+..++..+.....
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555544433
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.23 E-value=1.8 Score=44.23 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=18.5
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..+...-+-.-.-.++-||++|+||||..
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHH
Confidence 334433333223345899999999999998
No 268
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.20 E-value=2.3e+02 Score=34.69 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002261 593 KQESQVELLKQKHKSDEAAKRLQAEIQ 619 (946)
Q Consensus 593 ~~~~~~~l~k~k~k~e~~~~~L~~ei~ 619 (946)
+....+++.-++.+.+..+..++.+..
T Consensus 149 ~~~k~ae~~~lr~k~dss~s~~q~e~~ 175 (716)
T KOG4593|consen 149 KEDKLAELGTLRNKLDSSLSELQWEVM 175 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555554443
No 269
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.13 E-value=1.7e+02 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~ 627 (946)
+.....++......|..++..+++....
T Consensus 175 l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 175 LDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445555555555555555554443
No 270
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.91 E-value=98 Score=30.28 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
+.+.|..+...+...+..|.+|......+
T Consensus 78 l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 78 LRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44445555556666666666666665555
No 271
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.86 E-value=1.7 Score=47.39 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=24.8
Q ss_pred cccccccchhhHHhhhcC-CCeeEEEeccCCCCccccc
Q 002261 62 SAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 62 ~~v~~~~~~~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm 98 (946)
+.+++..|-.++.+.+.| .---.+-|||.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 344444455555555555 3345678999999999998
No 272
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=72.41 E-value=1.2 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=13.3
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|-..+|+.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4566778999999999999987
No 273
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.34 E-value=57 Score=36.51 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 537 IMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
+..|+.+...+.+|++....=+..+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665554444
No 274
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=72.09 E-value=2.3e+02 Score=34.22 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~ 557 (946)
.+......-+..-|.|.|.|..+
T Consensus 59 ~k~k~~~~llK~yQ~EiD~LtkR 81 (629)
T KOG0963|consen 59 DKLKMVNPLLKSYQSEIDNLTKR 81 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555565555543
No 275
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=71.92 E-value=1.8 Score=45.31 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.9
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..++..-. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 444443333 4566899999999998
No 276
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.85 E-value=8.4 Score=42.85 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.7
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccccC
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g 100 (946)
+|..++.|.+| +.+..||||||..+-.
T Consensus 37 cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 37 CIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhHHHhccccc--ccccccCCCcchhhhH
Confidence 46677899998 5677999999998844
No 277
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=71.80 E-value=2 Score=47.39 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=21.6
Q ss_pred hhHHhhhcCCC---eeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n---~ti~ayGqtgSGKT~Tm 98 (946)
|.+...+.|.- .|||+ |+||||||+-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 67777887764 46766 99999999888
No 278
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=71.72 E-value=2 Score=47.89 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=45.3
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCcccccc--CCCCCCCCc----------------------------ccHHHHHHHHH
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQT----------------------------GLIPQVMNALF 119 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~--g~~~~~~~~----------------------------Glipr~~~~lF 119 (946)
.+++-.+..++ +.|+..|.||||||+++- -++-+...+ |-=--.+.+|.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv 241 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV 241 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHH
Confidence 34444555555 788999999999999981 111111111 11222455665
Q ss_pred HHHHhccccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 120 NKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 120 ~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
..-=.+.++. +=+-||+..+.+|||..-+
T Consensus 242 kn~LRmRPDR-----IiVGEVRG~Ea~dLL~Amn 270 (355)
T COG4962 242 KNALRMRPDR-----IIVGEVRGVEALDLLQAMN 270 (355)
T ss_pred HHHhhcCccc-----eEEEEecCccHHHHHHHhc
Confidence 4433333332 2246899999999997644
No 279
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=71.57 E-value=2.1 Score=44.00 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=20.6
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+++..++.. ...|+-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34555555554 345677899999999988
No 280
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.52 E-value=1.6 Score=47.20 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=27.9
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++|.|..+-..+.. +..+|.. +..++..+-.|. .++-||++|+||||..
T Consensus 74 k~~~~~d~~~~~~~-~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa 122 (254)
T COG1484 74 KTFEEFDFEFQPGI-DKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLA 122 (254)
T ss_pred CCcccccccCCcch-hHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHH
Confidence 34444333323333 3344433 445555555343 4577999999999998
No 281
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=70.96 E-value=1.8 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.4
Q ss_pred cCC-CeeEEEeccCCCCccccc
Q 002261 78 QGY-NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~-n~ti~ayGqtgSGKT~Tm 98 (946)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 356666999999999988
No 282
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=70.74 E-value=1.3e+02 Score=30.65 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002261 586 QILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (946)
Q Consensus 586 ~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~ 629 (946)
++..|..-.++..+|...+.-.|.+++.|...+.+...++--++
T Consensus 118 klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQ 161 (178)
T PF14073_consen 118 KLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQ 161 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555777888888899999999999988888876663
No 283
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=70.65 E-value=2.6 Score=38.96 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHH
Q 002261 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKI 122 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i 122 (946)
|+-||++|.|||+.+ ..++.+|...+
T Consensus 1 I~i~G~~G~GKS~l~-------------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA-------------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH-------------HHHHHHHHHHh
Confidence 578999999999988 44566666555
No 284
>PRK06547 hypothetical protein; Provisional
Probab=70.58 E-value=2.7 Score=42.67 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=21.0
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..++..+..+.-.-|+.+|.+|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555555556667799999999876
No 285
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.45 E-value=55 Score=34.25 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQILELKKK 593 (946)
Q Consensus 578 ~kl~~lE~~~~~Lk~~ 593 (946)
.++..||.++.+|+.+
T Consensus 93 ~rlp~le~el~~l~~~ 108 (206)
T PRK10884 93 TRVPDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666655543
No 286
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=70.03 E-value=2 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.0
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+.-.++.++..|..|||||+||
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHH
Confidence 3337788889999999999999
No 287
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.88 E-value=75 Score=33.26 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 002261 680 RKTEEAAIATKRLKELLE 697 (946)
Q Consensus 680 rk~eE~~a~~k~Lke~le 697 (946)
.+.+.+.+.+..+++...
T Consensus 153 ~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 153 KKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666665544
No 288
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.87 E-value=2.3e+02 Score=33.40 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=10.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 002261 677 VLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 677 vl~rk~eE~~a~~k~Lke~le 697 (946)
.+...+.++.+.+..++..++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554
No 289
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.70 E-value=1.5e+02 Score=31.08 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 002261 667 LEALNQRQKMVLQRKTEEA 685 (946)
Q Consensus 667 le~~~~~q~~vl~rk~eE~ 685 (946)
.++.-.+++++++||..++
T Consensus 127 r~~~~Ka~e~~~kRkQdsa 145 (246)
T KOG4657|consen 127 RQALSKAKENAGKRKQDSA 145 (246)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3334556667777766654
No 290
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.44 E-value=97 Score=36.25 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTI 906 (946)
Q Consensus 861 ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~ 906 (946)
+..+...-|...+..-.+++.++++++.+..++...+.+-++.+++
T Consensus 255 Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 255 EKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444477777777777888888888888888888888888876
No 291
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.39 E-value=58 Score=38.94 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 724 SLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 724 ~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
....|.+.|++.+- ++..++..|...-.....|..+|..|++
T Consensus 467 ~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 467 RDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888666 7888889999999999999999999884
No 292
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.20 E-value=3.1e+02 Score=34.58 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHH
Q 002261 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (946)
Q Consensus 500 l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~k 579 (946)
.+.+...|..+|+.--.. +...+....|++.-+.+.-.+++....|.+..... +-..+...-.|++.+++.+
T Consensus 22 ae~e~~~lk~~l~~~~~~-----~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~---~~~~~s~e~e~~~~~le~~ 93 (769)
T PF05911_consen 22 AEAEAASLKQQLEAATQQ-----KLALEDRVSHLDGALKECMRQLRQVREEQEQKIHE---AVAKKSKEWEKIKSELEAK 93 (769)
T ss_pred HHHHHHHHHHHHHHHHHH-----hHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 345555555555543110 11122333455555666666666655554444332 2112223444666677777
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 002261 580 LKALEAQILELKKK-----------QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA--EQFRQWKASR 646 (946)
Q Consensus 580 l~~lE~~~~~Lk~~-----------~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~--~~~r~~~~~~ 646 (946)
|.++..++..+..+ ..-..+|...|...+.++..|+..|+.+.+.-..|.-.+.--. =..|..+..+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776544332 2335567777778888888888888777776666644333111 1122222222
Q ss_pred HHH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 647 EKE-LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 647 ~kE-~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.+. .-...|+.-..-..|.+|+++=++-..+.+||.=.-+ ++...|...+
T Consensus 174 ~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpa-a~a~mk~ev~ 224 (769)
T PF05911_consen 174 SRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPA-ALAQMKNEVE 224 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH-HHHHhHHHHH
Confidence 111 1112222333344577777777777777777776633 3334444444
No 293
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.08 E-value=76 Score=32.70 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 529 ~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
.......++..|..++..+...+..+...+....
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446666777777777777777776666653
No 294
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.02 E-value=3.5e+02 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
+..+-+|+||||||..|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34566799999999877
No 295
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=68.81 E-value=7.1 Score=48.81 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=40.7
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHH
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD 147 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~D 147 (946)
.+..+.+|.|+.|+| |||||||-+- ++| ++..|+..-.....+.-+.++||=+---|..|..
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA-----------fLp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~ 91 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA-----------FLP-VINELLSLGKGKLEDGIYALYISPLKALNNDIRR 91 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH-----------HHH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHH
Confidence 456678999998888 9999998765 334 5566665421112234678888877666554433
No 296
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=68.66 E-value=2.8 Score=43.77 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=16.4
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++.++ .+-.|++.|+.||||||.-
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHH
Confidence 44445 5567899999999999886
No 297
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=68.49 E-value=2.1 Score=48.38 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=19.0
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..+.. ..+.|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 2345778899999999998
No 298
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=68.26 E-value=2.1 Score=48.35 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=34.7
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhc--C--CCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--G--YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~--G--~n~ti~ayGqtgSGKT~Tm 98 (946)
++.||++.+.-.. -..|.+.++-.++.+++. | .---++-||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 4677777654322 345666777777777774 2 3345788999999998764
No 299
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.15 E-value=1.8e+02 Score=31.37 Aligned_cols=106 Identities=22% Similarity=0.379 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002261 548 QQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (946)
Q Consensus 548 ~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~ 627 (946)
+.++..|+.+|..+.+........| .+.+.+...|+.+ ++..+.+...|.+.....+.....|..+.......+..
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L-~e~e~~a~~Leek---~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~ 79 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEAL-EESEETAEELEEK---LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ 79 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555442111011111 1223344455554 44444444444444444444444444433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 628 L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
|..+ -.....++.+|.....+...+..+|+
T Consensus 80 Le~e-----------~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 80 LEQE-----------LREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 23334445555555555555544444
No 300
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=68.08 E-value=2.6e+02 Score=33.28 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 532 HFGKKIMELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 532 ~~e~ki~~Le~ei~~l~kEr~~L~~~ 557 (946)
-+++++..++.++...+........+
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666555555555433
No 301
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=68.07 E-value=2.4e+02 Score=32.80 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIE 559 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~ 559 (946)
-..+....++.+++.+......+...-.++ .....++..|+++.+.|+.+-..+..-+.
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea--~k~s~~i~~l~ek~r~l~~D~nk~~~~~~ 319 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEA--MKISQKIKTLREKWRALKSDSNKYENYVN 319 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555666666666655544433111111 12345666666666666655555544433
No 302
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.72 E-value=3e+02 Score=33.72 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQIL----ELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (946)
Q Consensus 578 ~kl~~lE~~~~----~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~ 620 (946)
+++..++.++. +|.++-.+..++.+.+..-+-++..|...+..
T Consensus 370 qr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e 416 (786)
T PF05483_consen 370 QRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAE 416 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555555555 45566666666777777766666666665544
No 303
>PHA00729 NTP-binding motif containing protein
Probab=67.67 E-value=3.3 Score=43.84 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.1
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..+..|-=..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44555555433347999999999999987
No 304
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=67.66 E-value=2.7 Score=47.44 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.+ ...|+..|+||||||++|
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHH
Confidence 344444433 244777899999999999
No 305
>PRK13764 ATPase; Provisional
Probab=67.56 E-value=2.7 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.5
Q ss_pred hhhcCCCeeEEEeccCCCCccccc
Q 002261 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 75 ~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344455899999999999999
No 306
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=67.19 E-value=2.3 Score=41.09 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+.+|++|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999886
No 307
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=66.88 E-value=2.8 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|....++-||++|+|||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345889999999999988
No 308
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=66.71 E-value=4.6 Score=47.32 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=34.2
Q ss_pred eEEEeccCCCCccccc---cCCCCCCCCcccHHHHHHHHHHHHHhc
Q 002261 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm---~g~~~~~~~~Glipr~~~~lF~~i~~~ 125 (946)
-||..|+|.|||||-- ++....+-..|=+....+++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999986 343445666788888999999988763
No 309
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=66.54 E-value=2.5 Score=44.99 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.2
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
--+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346899999999999875
No 310
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.53 E-value=3.1 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.6
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+......++.+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444557888999999999888
No 311
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=66.47 E-value=59 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHH
Q 002261 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRK---E-LVKQQRMREQAVTIA 907 (946)
Q Consensus 861 ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~---~-l~~~~~~~~~~~~~~ 907 (946)
+..+.-.++++..+++..+.....+.+.-.. - |..+...+.+|||+|
T Consensus 11 EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKL 61 (69)
T PF08912_consen 11 EKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKL 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334466666666666555544332222 2 889999999999975
No 312
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.19 E-value=2.2 Score=45.03 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCCCchhhcCC---------ceEEEEeCCCcceeec---c---eeEEeceEecCCCCCccccccccchhhH
Q 002261 9 SVKVAVHVRPLIGDERAQGC---------KECVAVTHGNPQVQIG---T---HSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~---------~~~~~~~~~~~~v~~~---~---~~f~FD~Vf~~~~s~q~~v~~~~~~~lv 73 (946)
.-.-+|||-....+|....+ ...|.|.|.+.-.++. . -..+|..|=+-+ -+.++|-+.+--|+.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld-~qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLD-VQKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccch-hhHHHHHHHHhccch
Confidence 34567888887777753221 1123333333221111 0 123333333322 223455555555666
Q ss_pred Hhhh---cCCC--eeEEEeccCCCCccccccC-------CC----CC---CCCcccHHHHHHHHHHHHHhccc
Q 002261 74 DGLF---QGYN--ATVLAYGQTGSGKTYTMGT-------GL----RE---GFQTGLIPQVMNALFNKIETLRH 127 (946)
Q Consensus 74 ~~~l---~G~n--~ti~ayGqtgSGKT~Tm~g-------~~----~~---~~~~Glipr~~~~lF~~i~~~~~ 127 (946)
..-+ =|.+ -.|+.||++|+|||...-. .| ++ ...-|==||.++++|.......+
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 5443 2554 3589999999999854310 00 00 11236669999999987765433
No 313
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=65.97 E-value=2.7 Score=42.60 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.9
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 314
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=65.80 E-value=3.7 Score=41.25 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=18.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..+..+. ..++..|+||||||+++
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHH
Confidence 344555443 44567799999999988
No 315
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.73 E-value=2.6 Score=46.41 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666699999999999
No 316
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=65.68 E-value=2.3 Score=44.22 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++.+|.||||||++|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999999999
No 317
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=65.43 E-value=2.5 Score=46.09 Aligned_cols=70 Identities=23% Similarity=0.200 Sum_probs=38.3
Q ss_pred eEEEeccCCCCcccccc----CC----CCC-----CCCcccHHHHHHHHHH--HHHhc---cccc----------eEEEE
Q 002261 83 TVLAYGQTGSGKTYTMG----TG----LRE-----GFQTGLIPQVMNALFN--KIETL---RHQM----------EFQLH 134 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm~----g~----~~~-----~~~~Glipr~~~~lF~--~i~~~---~~~~----------~~~v~ 134 (946)
-...||+|||||++.+- +. ... ..+.|+||-.=...++ -.+.. .++. .-.|.
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 35679999999999882 11 111 2356888864433332 11211 1111 12366
Q ss_pred eehhhhhhHHHHHhhcCc
Q 002261 135 VSFIEILKEEVRDLLDSV 152 (946)
Q Consensus 135 vS~~EIy~e~v~DLL~~~ 152 (946)
+||=|.-.++=+|.=+|.
T Consensus 169 msy~e~t~~~NldI~~p~ 186 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPN 186 (369)
T ss_pred ecHhhhCCccccCCCCch
Confidence 777666666666666553
No 318
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=65.32 E-value=2.8e+02 Score=32.64 Aligned_cols=84 Identities=29% Similarity=0.301 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHH
Q 002261 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWL 729 (946)
Q Consensus 650 ~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (946)
+.++-++.-+...++.+|.+ |-.=+++|+........++.+.|-+-+.+ .
T Consensus 221 l~~kt~el~~q~Ee~skLls----ql~d~qkk~k~~~~Ekeel~~~Lq~~~da-----------------------~--- 270 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLS----QLVDLQKKIKYLRHEKEELDEHLQAYKDA-----------------------Q--- 270 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHhh-----------------------H---
Confidence 33333333344444555542 23345566666666666666666532111 1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 730 EHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (946)
Q Consensus 730 ~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~ 766 (946)
-....+++|+++.|...++.=+.-+.+|..|+.+
T Consensus 271 ---~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 271 ---RQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1223345566666776666666667777766643
No 319
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.31 E-value=2.9 Score=48.05 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.2
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999999
No 320
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.12 E-value=2.4e+02 Score=31.64 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=13.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~ 627 (946)
+....-.+......|+.++..+++....
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444445555555555555444433
No 321
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.09 E-value=3.5e+02 Score=33.63 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002261 642 WKASREKELLKLKKEGRKNEFERHKLEA 669 (946)
Q Consensus 642 ~~~~~~kE~~~Lkk~~rk~~~e~~kle~ 669 (946)
.=.++..||..|+.=-|-++.-|.+|-.
T Consensus 530 tlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 530 TLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666666666666666654
No 322
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.75 E-value=2.2e+02 Score=31.14 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 536 KIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 536 ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
++..+...+..+..+++.+..++..+-
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666667667666666665543
No 323
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.52 E-value=3.1 Score=45.70 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
+-|+..||||||||+.-
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 46889999999999753
No 324
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=64.45 E-value=4.1 Score=42.05 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=19.5
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 34555666887 577889999999874
No 325
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=64.42 E-value=2.9 Score=51.30 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=31.4
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.-+||.+++.+ .. +..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46788888632 22 223556666788888999999999999876
No 326
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.20 E-value=2.4e+02 Score=31.37 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 002261 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENS 707 (946)
Q Consensus 663 e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~ 707 (946)
+.++|+.+-+.-.....-|.||+...+++|.|.+..++.-...|+
T Consensus 142 En~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 142 ENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333344556888999999999998876554444443
No 327
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.08 E-value=3.1e+02 Score=32.62 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 493 HALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 493 ~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~ 557 (946)
..+......++..+|...+..+...+..-+ .....|.+....|-..+.++.++.+.+.-.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke-----~sl~dlkehassLas~glk~ds~Lk~leIa 388 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKE-----SSLIDLKEHASSLASAGLKRDSKLKSLEIA 388 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 333444445555555555555444332211 222334455555555555555554444433
No 328
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=64.00 E-value=2.6 Score=40.66 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999877
No 329
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.89 E-value=2.8 Score=39.43 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.4
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678899999999887
No 330
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.88 E-value=2e+02 Score=30.52 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (946)
Q Consensus 613 ~L~~ei~~lk~~kv~L~~~~k~e~~~~r~ 641 (946)
.|..|+.+ |.....-+.++|+|+..+|+
T Consensus 151 fLESELdE-ke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 151 FLESELDE-KEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445433 33334446677777777776
No 331
>PF13514 AAA_27: AAA domain
Probab=63.83 E-value=4.8e+02 Score=34.75 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 722 EKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVD 767 (946)
Q Consensus 722 ~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~~ 767 (946)
...+..++....+...........++.+.+....+..++..+....
T Consensus 786 ~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 786 LEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677776666655666666666666666666666666655543
No 332
>PRK09183 transposase/IS protein; Provisional
Probab=63.81 E-value=2.9 Score=45.41 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.6
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.| |+-||++|+||||.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4554 567999999999998
No 333
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=63.60 E-value=11 Score=46.63 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.1
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...++-||+.|+|||.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999875
No 334
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.44 E-value=2.5e+02 Score=31.27 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhhhcHHHH
Q 002261 792 NARMERIASLENMLNMSSKAL 812 (946)
Q Consensus 792 ~~~~~qi~~Le~~~~~~~~~l 812 (946)
..+++.|..|++++.+.-=++
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777776644333
No 335
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.27 E-value=3.6e+02 Score=33.13 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 723 KSLQKWLEHELEVSAN-------VHEVRFKYEKQSQVQAALADELTILKQV 766 (946)
Q Consensus 723 ~~~~~~l~~Ele~~~~-------~~e~~~~~e~l~e~R~~l~~el~~l~~~ 766 (946)
+++...+.+++--... +-+....+.++...|+-+..+...+...
T Consensus 363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~ 413 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRA 413 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544443 3333445666677777777776666553
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.26 E-value=3.2 Score=47.39 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.8
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778899999999999
No 337
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=63.09 E-value=3.3 Score=34.40 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.9
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999877
No 338
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.90 E-value=3.4 Score=48.12 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 333344555557788999999999887
No 339
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=62.83 E-value=4.1e+02 Score=33.61 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 528 ALRHHFGK---KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQK 604 (946)
Q Consensus 528 ~~~~~~e~---ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k 604 (946)
.++++++. +-..+++++..|..-.++.+.++. -.+++.++++++.=.. .-.++.+.+
T Consensus 28 ~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr-----------~~ree~eq~i~~~~~~---------~s~e~e~~~ 87 (769)
T PF05911_consen 28 SLKQQLEAATQQKLALEDRVSHLDGALKECMRQLR-----------QVREEQEQKIHEAVAK---------KSKEWEKIK 87 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHH-----------HhhHHHHHHHHHHHHH---------HhHHHHHHH
Confidence 44544442 223455555555444444444444 3455555665553322 123355556
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
..+|.++..+..++...+.--..|
T Consensus 88 ~~le~~l~e~~~~l~~~~~e~~~l 111 (769)
T PF05911_consen 88 SELEAKLAELSKRLAESAAENSAL 111 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 666666666666665555444433
No 340
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=62.67 E-value=6.1 Score=44.75 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
-+..|+-.|++|||||+..
T Consensus 77 ~r~il~L~GPPGsGKStla 95 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566788899999999765
No 341
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=62.45 E-value=4.1 Score=48.69 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=22.1
Q ss_pred chhhHHhhhcCCC--eeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n--~ti~ayGqtgSGKT~Tm 98 (946)
|+..+...+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4455666565553 46778999999999998
No 342
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=62.07 E-value=12 Score=47.79 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=49.7
Q ss_pred eeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhh-HHHHHhhcCccccccccc
Q 002261 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK-EEVRDLLDSVSVSKSVTA 160 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~-e~v~DLL~~~~~~~~~~~ 160 (946)
++++-+|+||+|||++. ..+...||. ...+.+.+.+-+... ..+.-|+.+++. .
T Consensus 597 ~~~lf~Gp~GvGKT~lA-------------~~La~~l~~-------~~~~~~~~dmse~~~~~~~~~l~g~~~g-----y 651 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA-------------LALAELLYG-------GEQNLITINMSEFQEAHTVSRLKGSPPG-----Y 651 (852)
T ss_pred eEEEEECCCCCCHHHHH-------------HHHHHHHhC-------CCcceEEEeHHHhhhhhhhccccCCCCC-----c
Confidence 46888999999999987 223444552 123445666555432 234445433221 1
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcc
Q 002261 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGS 209 (946)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~ 209 (946)
-|... .+.-.-.++..|..-+.+..+...+-.-..-++++|..|.
T Consensus 652 vg~~~----~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 652 VGYGE----GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred ccccc----cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 11100 0000012334455556666665544444455667776664
No 343
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=62.04 E-value=3.7 Score=44.55 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.4
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999987
No 344
>PTZ00424 helicase 45; Provisional
Probab=61.68 E-value=4.2 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.5
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..++.|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456667889985 46789999999876
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=61.57 E-value=3.3 Score=43.76 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=15.2
Q ss_pred EEEeccCCCCccccc--cCCCC
Q 002261 84 VLAYGQTGSGKTYTM--GTGLR 103 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm--~g~~~ 103 (946)
|.-.|++|||||+.| .|+..
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 566799999999987 44443
No 346
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.19 E-value=4.1e+02 Score=33.04 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002261 743 RFKYEKQSQVQAALADELTILKQVDQ 768 (946)
Q Consensus 743 ~~~~e~l~e~R~~l~~el~~l~~~~e 768 (946)
...+..+......++.++..+..++.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777776543
No 347
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.16 E-value=1.1e+02 Score=32.87 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 568 HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 568 ~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
...+.++.++.|..+||.++.. ....+..|+.||..|++-=++|
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~-----------------~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRK-----------------QQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888332 2334566777777777776666
No 348
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=61.01 E-value=98 Score=34.30 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHH
Q 002261 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~ 577 (946)
..+...+-..+..|..++..+.... .+...++.+...+..........+........++...|.++.+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~------------~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQ------------AKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQIL-ELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (946)
Q Consensus 578 ~kl~~lE~~~~-~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk 622 (946)
.....+..+.. -+.++.+.+.++. +.....++..|+.||..|+
T Consensus 254 ~e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 254 EEREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 349
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=60.93 E-value=86 Score=34.50 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 683 EEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTI 762 (946)
Q Consensus 683 eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~ 762 (946)
||+.+.+|+++.... +-+...+++|+.++.++.++..+-=.++..|.+.+.+|..
T Consensus 178 ee~d~S~k~ik~~F~-------------------------~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkr 232 (302)
T PF07139_consen 178 EEMDSSIKKIKQTFA-------------------------ELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKR 232 (302)
T ss_pred HHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888886654 2457778999999999999999988999999999999987
Q ss_pred HHH
Q 002261 763 LKQ 765 (946)
Q Consensus 763 l~~ 765 (946)
+-.
T Consensus 233 ltd 235 (302)
T PF07139_consen 233 LTD 235 (302)
T ss_pred HHH
Confidence 655
No 350
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=60.57 E-value=56 Score=35.61 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccC--C--cchhhhhhhH
Q 002261 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAE---IENLAAN--S--DGHTQKMQDG 575 (946)
Q Consensus 503 el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~---l~~~~~~--~--~~~~~Kl~~~ 575 (946)
++..|..-+..+|+.+ +......+-.+.|+.++.+|.++.+.|+.|..+..-- +...-++ + ++..-.++.=
T Consensus 36 EVEKLsqTi~ELEEai--LagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqW 113 (351)
T PF07058_consen 36 EVEKLSQTIRELEEAI--LAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQW 113 (351)
T ss_pred HHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHH
Confidence 4455666666666665 4444556778899999999999999999987665432 2222221 2 2344444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Q 002261 576 HTLKLKALEAQILELKKKQESQVELLK----QKHKSDEAAKRLQAEIQSI 621 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~~~~~~~~l~k----~k~k~e~~~~~L~~ei~~l 621 (946)
++.+ .=|+.++..|+.+...-.+--| +|.++.-.++.|.+.+..-
T Consensus 114 LEER-R~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~~ 162 (351)
T PF07058_consen 114 LEER-RFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKGS 162 (351)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3222 2356666677766555444433 3566777777777766543
No 351
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=60.01 E-value=1.6e+02 Score=27.96 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHH
Q 002261 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKA 582 (946)
Q Consensus 503 el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~ 582 (946)
+++++-.++..+...+..+. .....++.++...++=.++|..--.+..-.+.-.--=++..+..-+.+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~------------~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~e 74 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVI------------LQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDE 74 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002261 583 LEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI 621 (946)
Q Consensus 583 lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~l 621 (946)
|+..+..|...... |.++.+++++++..|+.+|..+
T Consensus 75 L~er~E~Le~ri~t---LekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 75 LEERKETLELRIKT---LEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 352
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.00 E-value=3.4 Score=46.09 Aligned_cols=119 Identities=21% Similarity=0.332 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCCchh-hcCCceEEE--------EeCCC--cceee----cceeEEeceEecCCCCCccccccccchhh
Q 002261 8 CSVKVAVHVRPLIGDER-AQGCKECVA--------VTHGN--PQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~-~~~~~~~~~--------~~~~~--~~v~~----~~~~f~FD~Vf~~~~s~q~~v~~~~~~~l 72 (946)
+.-+.+|++.|...++. ..|+..++. +.|.+ |.|.. ..-.-+|+.|=|- ..+-+++.+.+.-|+
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL-~~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGL-DEQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCH-HHHHHHHHHHhcccc
Confidence 34577888888877664 334433322 22222 11111 0112344444432 123345666666666
Q ss_pred HH-hhhc--CCCe--eEEEeccCCCCcccccc-----CC--C----CC---CCCcccHHHHHHHHHHHHHhccc
Q 002261 73 VD-GLFQ--GYNA--TVLAYGQTGSGKTYTMG-----TG--L----RE---GFQTGLIPQVMNALFNKIETLRH 127 (946)
Q Consensus 73 v~-~~l~--G~n~--ti~ayGqtgSGKT~Tm~-----g~--~----~~---~~~~Glipr~~~~lF~~i~~~~~ 127 (946)
.+ .+|. |..- .|+.||++|+|||-.-- ++ | ++ ...-|==+|.+++||.......+
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 64 3443 6543 69999999999986440 00 0 00 01225558999999998766443
No 353
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=59.65 E-value=4.6 Score=46.12 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.2
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
..-|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 555666799999999999
No 354
>PRK10536 hypothetical protein; Provisional
Probab=59.59 E-value=5.5 Score=42.98 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.8
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+.-|+..|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348899999999999976
No 355
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=59.54 E-value=4.5 Score=45.85 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=30.4
Q ss_pred EEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
-+||.|+| |+.+... ..|+=.-+-.|-=.+.+-||++|+|||..-
T Consensus 21 ~~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 21 KSLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred CCHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 36677775 3444433 345545555677778899999999999753
No 356
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.28 E-value=3.4e+02 Score=31.52 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 727 ~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
.+..+=.|+..-+...+..+-+.+++++.|-++...+-.
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556667777788888888888887765433
No 357
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=58.95 E-value=4.3 Score=42.10 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.0
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
-..||..|+.|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 346788899999999887
No 358
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=58.72 E-value=5.4 Score=47.14 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.8
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| |++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3556678887 677889999999775
No 359
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.26 E-value=9.1 Score=41.13 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccchhhHHhhh-cCCCeeEEEeccCCCCccccc--------cCCCCCCCCccc
Q 002261 65 FGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM--------GTGLREGFQTGL 110 (946)
Q Consensus 65 ~~~~~~~lv~~~l-~G~n~ti~ayGqtgSGKT~Tm--------~g~~~~~~~~Gl 110 (946)
|+..-..+|...+ +||.--|++.|.||-|||+.| .+.+.++..+++
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V 79 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNV 79 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCc
No 360
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=58.10 E-value=4.2 Score=46.89 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 678999999999987
No 361
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=58.09 E-value=4.6e+02 Score=32.70 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 002261 383 KLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNE 422 (946)
Q Consensus 383 ~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~ 422 (946)
.|..++..|+.++......++..-.-.|.++|..|..+.+
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d 472 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEID 472 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHH
Confidence 4677888888887543111111111235666666655443
No 362
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=57.82 E-value=3e+02 Score=30.53 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=18.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002261 565 SDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (946)
Q Consensus 565 ~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~ 596 (946)
.++...-|..++++--+++|=++.+-++....
T Consensus 137 GDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~ 168 (561)
T KOG1103|consen 137 GDDLTAHLEKEREQLQQQIEFEIEEKKKAEIA 168 (561)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665555444333
No 363
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.69 E-value=74 Score=32.02 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002261 491 WEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (946)
Q Consensus 491 ~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~ 563 (946)
..+.....+|..++.+|...+..++.++..+...-+ ..+|...|..|+.|...+...+..+.+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555555555544442221 245555666666666666666666554
No 364
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.54 E-value=1.2e+02 Score=30.57 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 537 IMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
|.+|.+++..+..+...|..++.++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 365
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.45 E-value=5.6 Score=43.57 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=19.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+++.++.. +.-|+-+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444443 667799999999999877
No 366
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.26 E-value=2e+02 Score=34.05 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=35.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR-------QWKASREKELLKLKKEGRKNEFERHKLEAL 670 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r-------~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~ 670 (946)
.+.++....|-+.+++.+-....|+++|+.=...+- -.+....+|+..+-++-+-.++-+-.+.+.
T Consensus 612 ~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~ 684 (741)
T KOG4460|consen 612 KSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMK 684 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444555555666666666666664444433 345556666655555555555554444433
No 367
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=56.94 E-value=4.9 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.3
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 454557888999999999887
No 368
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=56.80 E-value=4.8 Score=42.56 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.3
Q ss_pred CeeEEEeccCCCCcccccc
Q 002261 81 NATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~ 99 (946)
...++-||++|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3558999999999999883
No 369
>PF14992 TMCO5: TMCO5 family
Probab=56.74 E-value=1.2e+02 Score=33.04 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002261 534 GKKIMELEEEKRIVQQERDRLLAEIENL---AANSDGHTQKMQDGHTLKLKALEAQILELKKK 593 (946)
Q Consensus 534 e~ki~~Le~ei~~l~kEr~~L~~~l~~~---~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~ 593 (946)
+.++..+......++++..++.+.+... ..+.-.-.+|+++.. +++.+ +.++.-|.++
T Consensus 115 k~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L-~rmE~-ekE~~lLe~e 175 (280)
T PF14992_consen 115 KNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL-RRMEE-EKEMLLLEKE 175 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHH
Confidence 3555666666666666666665443332 222223444555555 44444 4444444433
No 370
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=56.50 E-value=6.1 Score=46.29 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.4
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4566778887 788899999999875
No 371
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=56.20 E-value=4.8 Score=43.02 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.3
Q ss_pred eccCCCCccccc
Q 002261 87 YGQTGSGKTYTM 98 (946)
Q Consensus 87 yGqtgSGKT~Tm 98 (946)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999998
No 372
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=56.04 E-value=5.2 Score=41.82 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.6
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 373
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=55.96 E-value=3.7e+02 Score=30.92 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI---KQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~---k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~k 666 (946)
+.+++.+.++++..|+.++++-.++-..+.-+. +.|+.-.+..=..++-|++.|+++.+.+..+..+
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666655544433332221 2333333333344445555555555554444444
No 374
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=55.92 E-value=5.8 Score=44.89 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=22.4
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
...++..++.+. +.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 345666666653 78888999999999987
No 375
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=55.32 E-value=5 Score=45.89 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.6
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999887
No 376
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.20 E-value=4.6e+02 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 405 DEVQVLKGRIAWLEATNEDLCQELHEYRSRR 435 (946)
Q Consensus 405 ~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~ 435 (946)
.+.....++.+.|+-.++.|.-++.-..++.
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqV 134 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQV 134 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHH
Confidence 4455567777777777777766666555554
No 377
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.11 E-value=8.7 Score=46.56 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCeeEEEeccCCCCccccccCCCC-------CC-------CCcccHHHHHHHHHHHHHhcc
Q 002261 79 GYNATVLAYGQTGSGKTYTMGTGLR-------EG-------FQTGLIPQVMNALFNKIETLR 126 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm~g~~~-------~~-------~~~Glipr~~~~lF~~i~~~~ 126 (946)
-....|+.||++|+||||..+--.. +- ..-|--...+++||.+....+
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 3456799999999999998732100 00 123666778999999887643
No 378
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=54.83 E-value=6.4 Score=43.41 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=20.9
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|++ ..+.--+..|-.||+|++|||.++
T Consensus 184 pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 184 PLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 444 444566678889999999999988
No 379
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.82 E-value=34 Score=39.93 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002261 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 577 ~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
..+..+||++|..|+++ ...+.+.....+.+++.|+.|+..|+.+
T Consensus 75 Q~kasELEKqLaaLrqE---lq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRE---LDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35677888887777433 3335577777788888888888888766
No 380
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.69 E-value=1.1e+02 Score=34.08 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=19.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
.++++++.++++.+++.+++.+|+....|
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL 244 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEEL 244 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45556666777777777777777765554
No 381
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=54.62 E-value=4.4e+02 Score=31.41 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=13.3
Q ss_pred hhhhhhhHHHHHHHHHhhh
Q 002261 288 IHINRGLLALGNVISALGD 306 (946)
Q Consensus 288 ~~IN~sL~~L~~vi~~L~~ 306 (946)
-.|+.||..|.++...++.
T Consensus 213 ~c~~~sl~~l~~~~~k~a~ 231 (518)
T PF10212_consen 213 ECILSSLVSLTNGTGKIAA 231 (518)
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 4577778888777776664
No 382
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=54.57 E-value=6.6e+02 Score=33.46 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (946)
Q Consensus 725 ~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~ 766 (946)
+.+-++++++.+....+....++.+...+..-..++.+.+..
T Consensus 512 ~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~ 553 (1294)
T KOG0962|consen 512 QKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSR 553 (1294)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 445566666666666666777777777777777777766554
No 383
>PF05729 NACHT: NACHT domain
Probab=54.50 E-value=5.7 Score=39.03 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+.+|.+|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999988
No 384
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=54.48 E-value=8.6 Score=45.56 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.5
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999988
No 385
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=54.37 E-value=6.8 Score=45.78 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.2
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| |++.++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3455678987 466779999999875
No 386
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=54.24 E-value=5.5 Score=46.41 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.3
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 445789999999999877
No 387
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=54.11 E-value=6.4 Score=45.89 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.2
Q ss_pred cCCCceeeEEeecCCCCCCHHHHHHHHHHHHH
Q 002261 331 LGGNSKTVMIACISPADINAEESLNTLKYANR 362 (946)
Q Consensus 331 LgGns~t~~I~~vsp~~~~~~eTl~TL~fa~r 362 (946)
+.-..+..+|||+.+.+.+ +..|.+|-+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 4557899999999998864 445665543
No 388
>PRK04328 hypothetical protein; Provisional
Probab=54.02 E-value=8.4 Score=41.56 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=22.9
Q ss_pred chhhHHhhhcC---CCeeEEEeccCCCCcccc
Q 002261 69 VAPLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (946)
Q Consensus 69 ~~~lv~~~l~G---~n~ti~ayGqtgSGKT~T 97 (946)
.-|-+|.++.| ...+++.+|++|||||..
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 34567888876 578899999999999753
No 389
>PRK04195 replication factor C large subunit; Provisional
Probab=53.93 E-value=7 Score=46.54 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.7
Q ss_pred chhhHHhhhcCC-CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~-n~ti~ayGqtgSGKT~Tm 98 (946)
+..++.....|. ...++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344445544554 557889999999999887
No 390
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=53.39 E-value=5.4 Score=38.92 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.3
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999987
No 391
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.33 E-value=5.2e+02 Score=31.88 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHH
Q 002261 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEI-KEIKEQLNDLVALLKQ 885 (946)
Q Consensus 839 ~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l-~e~~~~~~~l~~~~r~ 885 (946)
..+..|+.-+......+...+.++...+... +.+.+++.++.+++++
T Consensus 542 ~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E 589 (739)
T PF07111_consen 542 EQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLRE 589 (739)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677777777777666544 3566666666655543
No 392
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=52.91 E-value=7.4 Score=43.42 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.6
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+++..++.+. ..|+-.|+||||||++|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34455555443 45667799999999987
No 393
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=52.89 E-value=6.6 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCcccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (946)
++..+-.|...++ ...+||||||+||.
T Consensus 425 i~~a~~~g~r~~L-l~maTGSGKT~tai 451 (1123)
T PRK11448 425 VEKAIVEGQREIL-LAMATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHhccCCeE-EEeCCCCCHHHHHH
Confidence 3444446765544 44899999999983
No 394
>PF13173 AAA_14: AAA domain
Probab=52.86 E-value=6.3 Score=37.61 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 395
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=52.86 E-value=11 Score=44.22 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=27.0
Q ss_pred eEEEeccCCCCccccc---cC----CCC-------CCCCcccHHHHHHHHHHHHHh
Q 002261 83 TVLAYGQTGSGKTYTM---GT----GLR-------EGFQTGLIPQVMNALFNKIET 124 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm---~g----~~~-------~~~~~Glipr~~~~lF~~i~~ 124 (946)
.|+-||++|+|||++. .+ .+- .....|--++.+..+|.....
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 274 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHh
Confidence 5788999999999987 11 100 011235567778888876544
No 396
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=52.84 E-value=19 Score=43.27 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=57.3
Q ss_pred hcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHH---hccccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIE---TLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~---~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
+...+..|+-+|.+||||++.- ++++..|-... +...+.. .|.|.|-.+..+.+-..|-...
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~A--------------~~IH~~~~~~~~~~S~r~~~p-fv~inCaal~e~lleseLFG~~ 302 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELAA--------------QAIHREYFARHDARQGKKSHP-FVAVNCGAIAESLLEAELFGYE 302 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHHH--------------HHHHHhhcccccccCccCCCC-eEEeecccCChhhHHHHhcCCc
Confidence 3567899999999999997544 45554322111 1111222 2444443343333333332111
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhccccc
Q 002261 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSR 212 (946)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R 212 (946)
.+ ...+. ...+++ -.+....+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 303 ~g------aftga-~~~~~~-Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 303 EG------AFTGS-RRGGRA-GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cc------cccCc-cccccC-CchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 00 00000 000111 11223345678888888888777778888887765544
No 397
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=52.83 E-value=15 Score=44.14 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=25.4
Q ss_pred eceEecCCCCCccccccccchhhHHhhh--cCCCeeEEEeccCCCCccc
Q 002261 50 FDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKTY 96 (946)
Q Consensus 50 FD~Vf~~~~s~q~~v~~~~~~~lv~~~l--~G~n~ti~ayGqtgSGKT~ 96 (946)
|+.+||- +++-+.+|..+...+. ..-...++-.||+|+|||.
T Consensus 75 F~d~yGl-----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSs 118 (644)
T PRK15455 75 FEEFYGM-----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSS 118 (644)
T ss_pred hhcccCc-----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchH
Confidence 5667753 3444444544433332 3445567777999999994
No 398
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=52.80 E-value=6.5 Score=44.33 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=27.4
Q ss_pred eeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhH
Q 002261 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e 143 (946)
+.|+-||.+||||||++ +.+|+... .-.|.++++|-|.=
T Consensus 31 S~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred eeEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhccH
Confidence 34689999999999988 23444331 23588888888753
No 399
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=52.77 E-value=3.2e+02 Score=29.24 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHH---HHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002261 726 QKWLEHE---LEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLS 770 (946)
Q Consensus 726 ~~~l~~E---le~~~-~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~ 770 (946)
..|..+. ++.+- .+.++-..++.+...|+.++.-+..+-......
T Consensus 21 D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L 69 (234)
T cd07664 21 DAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAML 69 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4465543 33333 677788899999999999998888776654443
No 400
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=52.76 E-value=6 Score=40.33 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999888
No 401
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.53 E-value=86 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=13.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQS 620 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~ 620 (946)
..++|.+.|++|..|+.+|+.
T Consensus 55 h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 55 HRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777666654
No 402
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.35 E-value=75 Score=34.29 Aligned_cols=45 Identities=27% Similarity=0.242 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002261 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (946)
Q Consensus 628 L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~ 672 (946)
++-=+..+-++||..-..++.|+.+++.+-...+.++.+|++++-
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888999999999999999999999999999999997766
No 403
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=52.35 E-value=5.5e+02 Score=31.86 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.4
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
-.+.+|+.-|.+|+|||-+-
T Consensus 142 k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred hhcccEEEecCCCCCcchhH
Confidence 45678999999999999654
No 404
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=52.08 E-value=8.3 Score=45.55 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4566778987 677789999999875
No 405
>PLN03025 replication factor C subunit; Provisional
Probab=51.98 E-value=7.4 Score=43.61 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-||++|+|||++.
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34677999999999998
No 406
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=51.91 E-value=4.7 Score=44.39 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.9
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|++-+|+..|++|+|||..+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999998766
No 407
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=16 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=18.9
Q ss_pred CCCcccHHHHHHHHHHHHHhccc
Q 002261 105 GFQTGLIPQVMNALFNKIETLRH 127 (946)
Q Consensus 105 ~~~~Glipr~~~~lF~~i~~~~~ 127 (946)
+..-|++.|++.+|...+..+.+
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccC
Confidence 44569999999999999987764
No 408
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=51.51 E-value=8.7 Score=40.69 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=23.3
Q ss_pred chhhHHhhhcC---CCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G---~n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++.| ....+.-||++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34567777775 3567889999999999877
No 409
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=51.46 E-value=6.4 Score=38.52 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+..|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998875
No 410
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=51.43 E-value=7.6 Score=43.16 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.9
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999887
No 411
>PHA02244 ATPase-like protein
Probab=51.35 E-value=8.6 Score=43.71 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=17.8
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+...+-.|.+ |+-+|+||+|||+..
T Consensus 111 ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 34333335555 556999999999876
No 412
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.26 E-value=20 Score=42.59 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=14.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
..-|+|+++||||||+..
T Consensus 173 ~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 173 KRDVLACAPTGSGKTLAF 190 (593)
T ss_pred ccceEEeccCCCcchhhh
Confidence 344699999999997776
No 413
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=51.21 E-value=11 Score=44.09 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=19.9
Q ss_pred HhhhcCCCe------eEEEeccCCCCccccccC
Q 002261 74 DGLFQGYNA------TVLAYGQTGSGKTYTMGT 100 (946)
Q Consensus 74 ~~~l~G~n~------ti~ayGqtgSGKT~Tm~g 100 (946)
..+++|.|. .|+-+|++|||||+.|-+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 345666443 477889999999999953
No 414
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=51.14 E-value=8.2 Score=40.14 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...+.-||++|||||...
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567889999999999775
No 415
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=50.95 E-value=6.2 Score=45.86 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=20.0
Q ss_pred cCCCeeEEEeccCCCCccccccCCCCCCCCcccHHH
Q 002261 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQ 113 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr 113 (946)
.|-| +|.||+.|||||.+. .--+||+|-
T Consensus 197 GgHn--Ll~~GpPGtGKTmla------~Rl~~lLPp 224 (490)
T COG0606 197 GGHN--LLLVGPPGTGKTMLA------SRLPGLLPP 224 (490)
T ss_pred cCCc--EEEecCCCCchHHhh------hhhcccCCC
Confidence 3444 578999999999887 223677764
No 416
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=50.93 E-value=5.9 Score=45.37 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=24.1
Q ss_pred ccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 61 q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..+|+.++..+ .......+|..|+.|+||||.+
T Consensus 6 Q~~~~~~v~~~~----~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 6 QRRVFDTVIEAI----ENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHH----HccCCcEEEEEcCCCCChhHHH
Confidence 566776654433 3344456788999999999998
No 417
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.90 E-value=2.3e+02 Score=26.97 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhc
Q 002261 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (946)
Q Consensus 864 ~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~ 913 (946)
++.+-..+++.++.-+..++..++.+...+...+.+.+..+..++.+..+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444666777777777888888888888888888888888887776554
No 418
>PRK11281 hypothetical protein; Provisional
Probab=50.89 E-value=7.4e+02 Score=32.91 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002261 423 DLCQELH 429 (946)
Q Consensus 423 ~L~~eL~ 429 (946)
....++.
T Consensus 91 ~Ap~~l~ 97 (1113)
T PRK11281 91 QAPAKLR 97 (1113)
T ss_pred HhHHHHH
Confidence 3333333
No 419
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=50.89 E-value=5.1e+02 Score=31.67 Aligned_cols=6 Identities=50% Similarity=0.456 Sum_probs=3.0
Q ss_pred eeeccc
Q 002261 938 LTISWH 943 (946)
Q Consensus 938 ~~~~~~ 943 (946)
+|.||.
T Consensus 706 ~t~s~~ 711 (811)
T KOG4364|consen 706 LTVSST 711 (811)
T ss_pred ccchhh
Confidence 455553
No 420
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=50.57 E-value=7.1 Score=39.58 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.2
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+.+|++|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 421
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=50.49 E-value=9 Score=47.60 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=19.9
Q ss_pred chhhHHhhhc-----CCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-----G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..+++++.. |.+..|+. -+||||||+||
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~ 280 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTM 280 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHH
Confidence 4456666665 34555544 48999999999
No 422
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.36 E-value=6.8 Score=45.77 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=14.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+||+|||+|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999998
No 423
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.22 E-value=3.1e+02 Score=28.34 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002261 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (946)
Q Consensus 603 ~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~ 671 (946)
...+.|..+..|...|.+++.+...+ +..+....+||.+|+........++...+...
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~-----------~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKL-----------KEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666553333 22333334777777777777777666666443
No 424
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=50.20 E-value=11 Score=40.50 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHH
Q 002261 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFN 120 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~ 120 (946)
.-+||++.|-.|||||.-| +|...+|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~-------------QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM-------------QRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHH-------------HHHHHHHhh
Confidence 3568999999999999877 666666664
No 425
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.13 E-value=9.3 Score=41.59 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=50.1
Q ss_pred EEeceEecCCCCCccccccccchhh-HHhhhcCCC---eeEEEeccCCCCcccccc---CCCC----CC-------CCcc
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPL-VDGLFQGYN---ATVLAYGQTGSGKTYTMG---TGLR----EG-------FQTG 109 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~l-v~~~l~G~n---~ti~ayGqtgSGKT~Tm~---g~~~----~~-------~~~G 109 (946)
-.++.|-+-++. -+.+-+.++-|+ .-++|.|-- ..|+.||+.|+||+|.-- +..+ +- .=.|
T Consensus 130 VkWsDVAGLE~A-KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGA-KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhH-HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 355566654443 345555666665 357777664 579999999999999651 1000 00 1136
Q ss_pred cHHHHHHHHHHHHHhcccc
Q 002261 110 LIPQVMNALFNKIETLRHQ 128 (946)
Q Consensus 110 lipr~~~~lF~~i~~~~~~ 128 (946)
=-.+.+..||.......+.
T Consensus 209 ESEkLVknLFemARe~kPS 227 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPS 227 (439)
T ss_pred cHHHHHHHHHHHHHhcCCc
Confidence 6678899999887765543
No 426
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.77 E-value=7.1 Score=45.13 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.4
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 446899999999999876
No 427
>PRK07261 topology modulation protein; Provisional
Probab=49.73 E-value=7.4 Score=39.33 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.2
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+..|++|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999876
No 428
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=49.69 E-value=3.4e+02 Score=28.62 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF-RQWKASREKELLKLKKE 656 (946)
Q Consensus 578 ~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~-r~~~~~~~kE~~~Lkk~ 656 (946)
+.+.+++.. |.+.....++....+..++.++..+...+.....+=..-+++=+++..+. =..+...+..+..|+..
T Consensus 31 q~irem~~~---l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 31 LIIQEMEDT---LVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 44444445556666666666666666666666554444333333443322 12223333333344433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002261 657 GRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (946)
Q Consensus 657 ~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~L 692 (946)
-......+.+|+ .+-.-|++|++++-+....|
T Consensus 108 ~~~~~~~v~~l~----~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 108 LAAVEETLAKLQ----EDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 12233444555554444433
No 429
>PRK08118 topology modulation protein; Reviewed
Probab=49.64 E-value=7.5 Score=39.16 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.6
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+..|++|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999543
No 430
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.49 E-value=3.3e+02 Score=28.40 Aligned_cols=114 Identities=25% Similarity=0.284 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 618 IQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 618 i~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
-.+....-..||+.||++....+.-....++.+..+..+-+++..-+.+++ +|+....+.|+. .+
T Consensus 18 YndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~--------------~e~~eL~k~L~~-y~ 82 (201)
T PF13851_consen 18 YNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAE--------------EEVEELRKQLKN-YE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------HHHHHHHHHHHH-HH
Confidence 334445556677888877776666666666666666665555555444444 455555555543 22
Q ss_pred HhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 698 ARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTI 762 (946)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~-~~~e~~~~~e~l~e~R~~l~~el~~ 762 (946)
+.+..-. ..+....-++.++..+. .-+-+...++.+..+|..|...+..
T Consensus 83 kdK~~L~----------------~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 83 KDKQSLQ----------------NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111100 01233444455555555 3333355666666666666665543
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.27 E-value=7.2 Score=46.11 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 45777799999999999
No 432
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=49.26 E-value=7.4 Score=40.90 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446699999999998
No 433
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=49.23 E-value=6.6 Score=44.21 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 36788999999999988
No 434
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.23 E-value=7.2e+02 Score=32.29 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 002261 381 MQKLRQQLKYLQ 392 (946)
Q Consensus 381 i~~Lr~ei~~Lk 392 (946)
+..+..++..+.
T Consensus 205 ~~~~~~e~~~~~ 216 (908)
T COG0419 205 LEALEEELKELK 216 (908)
T ss_pred HHHHHHHHHHHH
Confidence 344444554443
No 435
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.12 E-value=10 Score=45.01 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=20.3
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|..++.|.|+ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 456778899974 56679999999764
No 436
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.07 E-value=4.7e+02 Score=33.00 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGD-I---DTEALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k-~---~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~ 556 (946)
..=+++++..+..+|+..|..+..+.+ + +....-+.+-.++.+|+.++..++.....+..
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQ 332 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888877543 2 22222233445677777777777655555543
No 437
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=49.00 E-value=8.1 Score=42.42 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.3
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|++.+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999877
No 438
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.86 E-value=2.1e+02 Score=29.95 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcC----cchhh-hhHHHHHHHhhcCCC
Q 002261 867 TEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASV----RFSAQ-HFMFTWLLILHTAPV 934 (946)
Q Consensus 867 ~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~ 934 (946)
.++.+++..+.+++.+++.++.++-.|.+.+......+..|..-..-+ ..+.- -++|-|.+.|+-+|-
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~~l~p~ 228 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPK 228 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhccCch
Confidence 335666666666666666667666666666665555555443333322 22322 356777777777763
No 439
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.86 E-value=1.6e+02 Score=37.36 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=3.2
Q ss_pred cccCCC
Q 002261 315 HVPYRD 320 (946)
Q Consensus 315 ~ipyRd 320 (946)
+||...
T Consensus 354 ~Vpa~~ 359 (771)
T TIGR01069 354 PIPANE 359 (771)
T ss_pred CccCCc
Confidence 555544
No 440
>PRK11519 tyrosine kinase; Provisional
Probab=48.74 E-value=6.5e+02 Score=31.68 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGD-I---DTEALRHHFGKKIMELEEEKRIVQQERDRL 554 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k-~---~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L 554 (946)
..=+++++.++..+|+..|..+..+.. + +.+...+.+-+.+.+++.++..++.....+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888877542 1 222222333344555555555554444433
No 441
>PRK00131 aroK shikimate kinase; Reviewed
Probab=48.72 E-value=7.9 Score=38.59 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.9
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999885
No 442
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.70 E-value=7.1e+02 Score=32.10 Aligned_cols=280 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 002261 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVEL----L 601 (946)
Q Consensus 526 ~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l----~ 601 (946)
.......-++.+..|..++..++.+.+++....+...........++...+ +....++.++..+++.+....-+ .
T Consensus 627 l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~-~er~~~~~~~~~~~~r~~~ie~~~~~l~ 705 (1072)
T KOG0979|consen 627 LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK-RERTKLNSELKSYQQRKERIENLVVDLD 705 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002261 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK---QE---AEQFRQWK-ASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (946)
Q Consensus 602 k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k---~e---~~~~r~~~-~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q 674 (946)
.++++....+..+-.+..++..+.+..+..+. .+ ........ .....-...+..+.++.+.-+.-+++-...-
T Consensus 706 ~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~l 785 (1072)
T KOG0979|consen 706 RQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNISFLEAREDLL 785 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH
Q 002261 675 KMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQ-VQ 753 (946)
Q Consensus 675 ~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e-~R 753 (946)
+..++-+..+|++.+++-.=+.-.+- ....+..+.++.-....+.-++=..+.++...+-.-.. ..
T Consensus 786 k~a~~~~k~~a~~~~~~~~~~t~~~~-------------~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~ 852 (1072)
T KOG0979|consen 786 KTALEDKKKEAAEKRKEQSLQTLKRE-------------IMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRAL 852 (1072)
T ss_pred HHHHHHHHHHHHhcccchhHHHhhhc-------------cccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCcCCCCCccccccCChhHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccc
Q 002261 754 AALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRG 833 (946)
Q Consensus 754 ~~l~~el~~l~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~ 833 (946)
....-.=..+.. -+.+..+|-+|+.++......+..+..++++.-+
T Consensus 853 ~~~n~ne~~vq~-------------------------y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke--------- 898 (1072)
T KOG0979|consen 853 KFENVNEDAVQQ-------------------------YEVREDELRELETKLEKLSEDLERIKDKLSDVKE--------- 898 (1072)
T ss_pred HHhcCChHHHHH-------------------------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHH---------
Q ss_pred cccccccHHHHHHHHHHHHHHH
Q 002261 834 RWNHLRFMGDAKNLLQYMFNVA 855 (946)
Q Consensus 834 ~w~~~~sl~eak~~l~~l~~~~ 855 (946)
.++..|++-=..+..-|...
T Consensus 899 --~w~~~le~~V~~In~~Fs~~ 918 (1072)
T KOG0979|consen 899 --VWLPKLEEMVEQINERFSQL 918 (1072)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=48.60 E-value=8.2 Score=35.87 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=14.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..+...|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34567899999999988
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.45 E-value=4e+02 Score=33.98 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=5.8
Q ss_pred CCCCCCHHHHHHHHH
Q 002261 344 SPADINAEESLNTLK 358 (946)
Q Consensus 344 sp~~~~~~eTl~TL~ 358 (946)
.|....=.-+|.|+-
T Consensus 334 GpN~gGKTt~lktig 348 (782)
T PRK00409 334 GPNTGGKTVTLKTLG 348 (782)
T ss_pred CCCCCCcHHHHHHHH
Confidence 344333333344443
No 445
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=48.43 E-value=7.8 Score=46.73 Aligned_cols=44 Identities=27% Similarity=0.414 Sum_probs=30.7
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+.-+|+.+++... . +..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~-----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE-----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH-----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4567888886421 1 344444556677788899999999998755
No 446
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=48.30 E-value=9.9 Score=46.86 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=17.7
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..++..- ..++.+|++|+|||||+
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~ 190 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTL 190 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHH
Confidence 44444322 34678999999999999
No 447
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.10 E-value=3.8e+02 Score=28.79 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 002261 511 LEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILEL 590 (946)
Q Consensus 511 Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~L 590 (946)
++.......+.. ......+++++.+.++...|..+...+..++.++ ......++..+..++.++.+|
T Consensus 23 ~~~~~~~~~~~~-----~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L--------~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 23 LDQAQQVQQQWV-----QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENL--------EVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 002261 591 KKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ-----WKASREKELLKLKK 655 (946)
Q Consensus 591 k~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~-----~~~~~~kE~~~Lkk 655 (946)
++.... +...++..+-+|.+|-...+.|=. ....+.+-+..|+.
T Consensus 90 ~~qi~~---------------------~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~ 138 (251)
T PF11932_consen 90 EQQIEQ---------------------IEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRA 138 (251)
T ss_pred HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
No 448
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.75 E-value=3.2e+02 Score=27.76 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 002261 691 RLKELLE 697 (946)
Q Consensus 691 ~Lke~le 697 (946)
.|+-.+|
T Consensus 142 ~lr~~iE 148 (177)
T PF07798_consen 142 NLRTEIE 148 (177)
T ss_pred HHHHHHH
Confidence 3555555
No 449
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=47.75 E-value=9.5 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+-+.-++.||+.|||||.||
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHH
Confidence 3566778999999999999999
No 450
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.74 E-value=3.2e+02 Score=27.76 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=10.3
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 002261 603 QKHKSDEAAKRLQAEIQSIK 622 (946)
Q Consensus 603 ~k~k~e~~~~~L~~ei~~lk 622 (946)
...+.+.++..|+.+|+..|
T Consensus 132 ~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 132 LNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666555433
No 451
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=47.60 E-value=9.5 Score=45.38 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
-..+-.||+|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 44567899999999999
No 452
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.48 E-value=4.8e+02 Score=29.81 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (946)
Q Consensus 582 ~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k 633 (946)
+++..+.+++..+.....+...-....+-+..+..++.++.....+...+|.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666655555555555566666555555554444433333
No 453
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=47.12 E-value=8.4 Score=44.61 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=30.3
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc--C--CCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G--~n~ti~ayGqtgSGKT~Tm 98 (946)
.++|+.|-|.+. .-..+.+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~-~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDI-QKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHH-HHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 466676666432 233343333344442 2343 2 3457899999999999887
No 454
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=46.96 E-value=8 Score=43.47 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=12.9
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999998
No 455
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.88 E-value=8.1 Score=44.34 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46788899999999999
No 456
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=46.86 E-value=8.9 Score=42.48 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999887
No 457
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=46.63 E-value=8.8 Score=37.48 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5789999999999876
No 458
>PRK06851 hypothetical protein; Provisional
Probab=46.59 E-value=15 Score=42.03 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=23.6
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+.+.++.|.+-.++..|.+|+|||++|
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 4556667788888999999999999999
No 459
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=46.42 E-value=10 Score=42.51 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.5
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+..|+-+|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 556899999999998776
No 460
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=46.27 E-value=46 Score=39.15 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=65.9
Q ss_pred cCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHH-hhcCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD-LLDSVSVSK 156 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~D-LL~~~~~~~ 156 (946)
..-+++|+-+|.||||| -++-|+++.. +.+.+ .-.|.|.|-.|-.+-+-. |+.......
T Consensus 161 A~s~a~VLI~GESGtGK--------------ElvAr~IH~~-----S~R~~-~PFVavNcaAip~~l~ESELFGhekGAF 220 (464)
T COG2204 161 APSDASVLITGESGTGK--------------ELVARAIHQA-----SPRAK-GPFIAVNCAAIPENLLESELFGHEKGAF 220 (464)
T ss_pred hCCCCCEEEECCCCCcH--------------HHHHHHHHhh-----CcccC-CCceeeecccCCHHHHHHHhhcccccCc
Confidence 48899999999999999 2566777654 11122 234677777666665555 332222111
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccc
Q 002261 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRA 213 (946)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~ 213 (946)
+ | ...+..-.+.....|..++..+.+++..--.-++++|+.+.-.|.
T Consensus 221 T-------G---A~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv 267 (464)
T COG2204 221 T-------G---AITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV 267 (464)
T ss_pred C-------C---cccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEec
Confidence 0 0 011222344444556678888888888888889999998765554
No 461
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.18 E-value=8.8 Score=43.85 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|++|+|||+|+
T Consensus 207 ~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 207 RIISLIGQTGVGKTTTL 223 (407)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999999
No 462
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.18 E-value=5.2e+02 Score=29.78 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 002261 501 DKELNELNKRLE 512 (946)
Q Consensus 501 ~~el~~L~~~Le 512 (946)
++.+.+++..|.
T Consensus 12 dqr~~~~~~~la 23 (459)
T KOG0288|consen 12 DQRLIDLNTELA 23 (459)
T ss_pred hhHHHHHHHHHH
Confidence 333444443333
No 463
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=46.11 E-value=12 Score=42.63 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..+.+|.+..||..++||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 456677888878888899999999875
No 464
>CHL00181 cbbX CbbX; Provisional
Probab=45.94 E-value=8.6 Score=42.48 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.5
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999876
No 465
>PF14282 FlxA: FlxA-like protein
Probab=45.92 E-value=94 Score=28.81 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002261 608 DEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 608 e~~~~~L~~ei~~lk~~kv~L 628 (946)
..++..|+.+|..|.++..+|
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666664444
No 466
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=45.90 E-value=11 Score=46.43 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=19.9
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556677876 688889999999886
No 467
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=45.87 E-value=14 Score=38.94 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=22.8
Q ss_pred chhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++. |+ ...++.||++|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4456788885 43 456789999999998876
No 468
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=45.85 E-value=8 Score=44.63 Aligned_cols=17 Identities=47% Similarity=0.708 Sum_probs=13.0
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
.-++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 44688999999999877
No 469
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=45.82 E-value=7.4 Score=38.66 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.9
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+..|++|||||+.-
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 356799999998664
No 470
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=45.80 E-value=6.3 Score=50.66 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=17.7
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+-|+-.+.+|+||||||++|
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CCcccEEEECCCCCCHHHHH
Confidence 34788899999999999999
No 471
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=45.79 E-value=14 Score=39.25 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred cchhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 68 CVAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 68 ~~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
+.-|-+|.++. |+ ..+++.+|.+|||||+..
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 34566777775 43 677888899999998765
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=45.77 E-value=8.9 Score=38.75 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999988
No 473
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=45.58 E-value=4.1e+02 Score=28.45 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHH
Q 002261 792 NARMERIASLENMLNMSSKALVEMA 816 (946)
Q Consensus 792 ~~~~~qi~~Le~~~~~~~~~l~~l~ 816 (946)
++-+..|++|+.++.+...+-.++-
T Consensus 232 q~s~Gria~Le~eLAmQKs~seElk 256 (330)
T KOG2991|consen 232 QASEGRIAELEIELAMQKSQSEELK 256 (330)
T ss_pred hhhcccHHHHHHHHHHHHhhHHHHH
Confidence 3445788999998877765554433
No 474
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.57 E-value=8.3 Score=43.09 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.1
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
...+|+-.|.||||||++|
T Consensus 142 ~~~siii~G~t~sGKTt~l 160 (312)
T COG0630 142 ARKSIIICGGTASGKTTLL 160 (312)
T ss_pred cCCcEEEECCCCCCHHHHH
Confidence 3456788899999999999
No 475
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.57 E-value=3.6e+02 Score=27.82 Aligned_cols=80 Identities=25% Similarity=0.428 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002261 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ 616 (946)
+-.+.....++..+++.+...+..- .-...+.+..+.+||..|..|+..... +...+...+.++..|+.
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~--------~~~~~~~e~~i~~Le~ki~el~~~~~~---~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEK--------EAELKELESEIKELEMKILELQRQAAK---LKEKKEAKDKEISRLKS 166 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5555555566666666666655442 112234455666666665555544322 55566666666666666
Q ss_pred HHHHHHHHHHH
Q 002261 617 EIQSIKAQKVQ 627 (946)
Q Consensus 617 ei~~lk~~kv~ 627 (946)
.+..++.....
T Consensus 167 ~~~~l~~~~~~ 177 (190)
T PF05266_consen 167 EAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHH
Confidence 66666655433
No 476
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=45.36 E-value=8.4 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
-.|.|-||+..|.+|||||+|+
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHH
T ss_pred ccccccceeeccccccccccch
Confidence 3689999999999999999997
No 477
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=45.36 E-value=9.5 Score=38.93 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.1
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998765
No 478
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=45.23 E-value=8.6 Score=45.98 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=15.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
-.|+-||++|+|||+..
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35899999999999987
No 479
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.20 E-value=9.9 Score=45.05 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=26.5
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCC-eeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n-~ti~ayGqtgSGKT~Tm 98 (946)
.-+||.|.+. +.+ +..+...+-.|.- ..++-||++|+|||++.
T Consensus 10 P~~~~divGq-----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 10 PKTFSEVVGQ-----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCCHHHccCc-----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3467777753 222 3333333334433 45789999999999887
No 480
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.19 E-value=2.6e+02 Score=25.98 Aligned_cols=100 Identities=22% Similarity=0.277 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002261 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKE 874 (946)
Q Consensus 795 ~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~ 874 (946)
..++..++..+.....++..+...+.+..--.. .+..+++......-+=.+++ ..++.+-+.+++.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~---------eL~~l~~d~~vyk~VG~vlv-----~~~~~e~~~~l~~ 74 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALE---------ELERLPDDTPVYKSVGNLLV-----KTDKEEAIQELKE 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHcCCCcchhHHHhchhhh-----eecHHHHHHHHHH
Confidence 456666666666666666666655555433222 12222211111111111111 1222233455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 875 QLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (946)
Q Consensus 875 ~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~ 908 (946)
.+..+...++.++.+...+..++.+.+..+..++
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555556666666666666666666666555443
No 481
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=45.08 E-value=9.3 Score=43.17 Aligned_cols=42 Identities=24% Similarity=0.447 Sum_probs=30.8
Q ss_pred EEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|.|..|.| |+.+ ..-++-.+++..-+.|+..|.+|+|||..+
T Consensus 1 ~pf~~ivg-----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG-----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc-----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 55666664 2222 456667777877778899999999999887
No 482
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=45.08 E-value=11 Score=40.06 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=28.1
Q ss_pred CeeEEEeccCCCCccccc------cCCCC--CCCCcccHHHHHHHHHHHHHh
Q 002261 81 NATVLAYGQTGSGKTYTM------GTGLR--EGFQTGLIPQVMNALFNKIET 124 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm------~g~~~--~~~~~Glipr~~~~lF~~i~~ 124 (946)
+.+-..+|++|+|||.|+ .|-+- -.-.+++=..++..||..+..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 344457999999999998 23211 012356777788888877765
No 483
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=44.99 E-value=11 Score=42.23 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.3
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|+.-+|++.|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999998765
No 484
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.75 E-value=3.8e+02 Score=34.05 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002261 539 ELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 539 ~Le~ei~~l~kEr~~L~~~ 557 (946)
++++-+.+|+.++..++..
T Consensus 512 ~~~~li~~L~~~~~~~e~~ 530 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQK 530 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 485
>PRK12704 phosphodiesterase; Provisional
Probab=44.51 E-value=6.4e+02 Score=30.40 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002261 673 RQKMVLQRKTEEAAIATKRLKELLEA 698 (946)
Q Consensus 673 ~q~~vl~rk~eE~~a~~k~Lke~le~ 698 (946)
++...|.++.+++.....+....|+.
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~ 146 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELER 146 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777777777777764
No 486
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=44.48 E-value=9.2 Score=42.15 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
-|+-||++|+|||++-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999876
No 487
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=44.42 E-value=21 Score=43.66 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++.+|+||||||.++
T Consensus 159 ~hvLviapTgSGKg~g~ 175 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF 175 (606)
T ss_pred ceEEEEcCCCCCcceEE
Confidence 45789999999999888
No 488
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.42 E-value=11 Score=40.22 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=29.7
Q ss_pred cCCCe--eEEEeccCCCCccccccC--CCCC------------CCCcccHHHHHHHHHHHHHh
Q 002261 78 QGYNA--TVLAYGQTGSGKTYTMGT--GLRE------------GFQTGLIPQVMNALFNKIET 124 (946)
Q Consensus 78 ~G~n~--ti~ayGqtgSGKT~Tm~g--~~~~------------~~~~Glipr~~~~lF~~i~~ 124 (946)
-|..- .|+.||+.|+|||..--. +-.+ ....|==.|.+++||.-...
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 36543 589999999999976511 0000 01235557889999976544
No 489
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=44.05 E-value=16 Score=38.49 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=23.0
Q ss_pred chhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++. |+ ...+.-||++|||||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 4466788885 44 446788999999999877
No 490
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.94 E-value=12 Score=45.61 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=19.9
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..++.|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3556788988 566789999999876
No 491
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.84 E-value=10 Score=44.08 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.6
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+..|...|+||+|||+|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346778899999999999
No 492
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=43.77 E-value=18 Score=44.44 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 456799999999999987
No 493
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.69 E-value=10 Score=44.25 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=17.6
Q ss_pred hhcCCCeeEEEeccCCCCccccccC
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGT 100 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g 100 (946)
+.+|.+. +|++|||||||+...+
T Consensus 108 i~~Grdl--~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 108 ISGGRDL--MACAQTGSGKTAAFLI 130 (482)
T ss_pred eecCCce--EEEccCCCcchHHHHH
Confidence 3456554 8899999999998743
No 494
>PRK14531 adenylate kinase; Provisional
Probab=43.54 E-value=11 Score=38.55 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
-|+.+|++|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998774
No 495
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=43.07 E-value=12 Score=40.76 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=19.3
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..++..+..|.+ |+-+|++|+|||+..
T Consensus 11 ~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 4444555555654 456899999999876
No 496
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=42.93 E-value=9.8 Score=39.22 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=12.8
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999876
No 497
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=42.81 E-value=15 Score=38.32 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=37.5
Q ss_pred ccccchhhHHhh-hcCCCeeEEE-eccCCCCccccc---cCCCCCC------CCcccHHHHHHHHHHHHHhccccceEEE
Q 002261 65 FGECVAPLVDGL-FQGYNATVLA-YGQTGSGKTYTM---GTGLREG------FQTGLIPQVMNALFNKIETLRHQMEFQL 133 (946)
Q Consensus 65 ~~~~~~~lv~~~-l~G~n~ti~a-yGqtgSGKT~Tm---~g~~~~~------~~~Glipr~~~~lF~~i~~~~~~~~~~v 133 (946)
|.-..+.+++++ |+=+.+-|.| .|+.|+|||++| .|..... .+.++-.-...++-....-+.+.....+
T Consensus 9 ~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 333344455544 3334444444 499999999998 3332211 1122222233344444444444555555
Q ss_pred Eeehhhh
Q 002261 134 HVSFIEI 140 (946)
Q Consensus 134 ~vS~~EI 140 (946)
-++..||
T Consensus 89 pFtv~eV 95 (259)
T COG4559 89 PFTVQEV 95 (259)
T ss_pred ceEHHHH
Confidence 5566554
No 498
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.77 E-value=5e+02 Score=28.66 Aligned_cols=231 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002261 484 IEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (946)
Q Consensus 484 ~ee~~~e~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~ 563 (946)
.+......+.......+...+.+++..=.........+. ..+..+..++.++.+.+..+..+++.+..++..+
T Consensus 2 ~~~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~-----ekRdeln~kvrE~~e~~~elr~~rdeineev~el-- 74 (294)
T COG1340 2 LAMLDKLDELELKRKQLKEEIEELKEKRDELRKEASELA-----EKRDELNAKVRELREKAQELREERDEINEEVQEL-- 74 (294)
T ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 002261 564 NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI------KAQKVQLQNKIKQEAE 637 (946)
Q Consensus 564 ~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~l------k~~kv~L~~~~k~e~~ 637 (946)
+.-+.+.-.++++|=..+..|+.......-.-+....++..+..|.--++-+ ....|+-+.+++.+.+
T Consensus 75 ------K~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le 148 (294)
T COG1340 75 ------KEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELE 148 (294)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q ss_pred HHH------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCC
Q 002261 638 QFR------QWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNST 711 (946)
Q Consensus 638 ~~r------~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~ 711 (946)
..+ ..-...-.|+..++++.+.....+..|-.+-+.-..-+-.-.+++...+++--+.++.
T Consensus 149 ~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~------------- 215 (294)
T COG1340 149 DAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEE------------- 215 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 712 GYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVD 767 (946)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~Ele~~~~~~e~~~~~e~l~e~R~~l~~el~~l~~~~ 767 (946)
+.+.....+.+-+....+..++..+....
T Consensus 216 ---------------------------~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 216 ---------------------------FVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred ---------------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 499
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=42.68 E-value=10 Score=45.23 Aligned_cols=14 Identities=57% Similarity=0.926 Sum_probs=0.0
Q ss_pred EEEeccCCCCcccc
Q 002261 84 VLAYGQTGSGKTYT 97 (946)
Q Consensus 84 i~ayGqtgSGKT~T 97 (946)
|+-||++|+|||++
T Consensus 219 ILLyGPPGTGKT~L 232 (512)
T TIGR03689 219 VLLYGPPGCGKTLI 232 (512)
T ss_pred eEEECCCCCcHHHH
No 500
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.60 E-value=3e+02 Score=28.22 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccccchhhHhhhhcccccccchhhhhhcCCCCchHHH
Q 002261 407 VQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEE 486 (946)
Q Consensus 407 ~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~~~~~~~k~~eLe~~l~~l~~~~~~l~e~~~~~~~~e~ee 486 (946)
++..-..|..|...|..|+.+-++.++.|-
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRdLCC-------------------------------------------------- 79 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRDLCC-------------------------------------------------- 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------------------------------------------
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 487 VAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHH---FGKKIMELEEEKRIVQQERDRLLA 556 (946)
Q Consensus 487 ~~~e~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~---~e~ki~~Le~ei~~l~kEr~~L~~ 556 (946)
.|.+--..-+....+|+.|.+.....|++. |..||.+||.....|-.|...|.+
T Consensus 80 ----------------FLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 80 ----------------FLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred ----------------ccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Done!