Query 002261
Match_columns 946
No_of_seqs 385 out of 2040
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 1.5E-91 5.1E-96 781.7 21.1 348 6-391 9-359 (365)
2 3b6u_A Kinesin-like protein KI 100.0 5.4E-91 1.8E-95 777.0 21.1 345 5-384 18-371 (372)
3 2vvg_A Kinesin-2; motor protei 100.0 4.7E-90 1.6E-94 765.5 22.0 331 7-378 3-347 (350)
4 1goj_A Kinesin, kinesin heavy 100.0 7.5E-90 2.6E-94 766.3 23.4 338 5-381 3-345 (355)
5 3cob_A Kinesin heavy chain-lik 100.0 2.4E-89 8.1E-94 764.0 25.0 346 7-395 4-354 (369)
6 3bfn_A Kinesin-like protein KI 100.0 1.1E-89 3.6E-94 768.3 20.2 342 3-385 16-366 (388)
7 1t5c_A CENP-E protein, centrom 100.0 6.5E-89 2.2E-93 757.1 24.9 337 6-378 2-340 (349)
8 1bg2_A Kinesin; motor protein, 100.0 5.8E-89 2E-93 751.4 20.3 321 6-366 5-325 (325)
9 2owm_A Nckin3-434, related to 100.0 7E-88 2.4E-92 769.3 25.0 346 6-380 36-428 (443)
10 1x88_A Kinesin-like protein KI 100.0 1E-88 3.5E-93 759.2 17.7 335 5-374 5-358 (359)
11 2zfi_A Kinesin-like protein KI 100.0 5.4E-88 1.8E-92 755.3 21.6 338 8-374 4-362 (366)
12 4a14_A Kinesin, kinesin-like p 100.0 9E-88 3.1E-92 749.3 22.2 333 5-364 8-344 (344)
13 2wbe_C Bipolar kinesin KRP-130 100.0 1.2E-87 4.2E-92 753.3 18.7 333 7-376 22-371 (373)
14 3lre_A Kinesin-like protein KI 100.0 3.2E-87 1.1E-91 746.1 21.9 323 7-366 9-355 (355)
15 2h58_A Kinesin-like protein KI 100.0 1.7E-85 5.9E-90 725.2 24.3 321 7-367 3-329 (330)
16 3gbj_A KIF13B protein; kinesin 100.0 2.5E-85 8.5E-90 730.6 20.6 329 8-366 1-350 (354)
17 1ry6_A Internal kinesin; kines 100.0 2.5E-85 8.6E-90 730.3 19.5 323 9-375 1-340 (360)
18 1v8k_A Kinesin-like protein KI 100.0 4.7E-85 1.6E-89 734.6 21.5 321 5-371 68-407 (410)
19 3t0q_A AGR253WP; kinesin, alph 100.0 1.6E-84 5.4E-89 723.7 23.2 333 7-370 4-348 (349)
20 2heh_A KIF2C protein; kinesin, 100.0 7.7E-85 2.6E-89 728.8 20.3 319 5-369 48-385 (387)
21 3nwn_A Kinesin-like protein KI 100.0 8.8E-85 3E-89 725.7 18.0 328 6-366 22-359 (359)
22 2rep_A Kinesin-like protein KI 100.0 2.4E-84 8.3E-89 725.4 21.2 325 7-366 21-376 (376)
23 1f9v_A Kinesin-like protein KA 100.0 7.2E-84 2.5E-88 717.0 22.3 329 8-371 3-346 (347)
24 2nr8_A Kinesin-like protein KI 100.0 6.2E-84 2.1E-88 718.6 18.0 323 6-366 21-358 (358)
25 3dc4_A Kinesin-like protein NO 100.0 2.1E-83 7.3E-88 710.6 17.5 315 5-371 19-340 (344)
26 4etp_A Kinesin-like protein KA 100.0 9.8E-83 3.4E-87 721.5 20.9 331 8-371 59-402 (403)
27 3u06_A Protein claret segregat 100.0 2.9E-82 9.8E-87 716.7 21.2 317 7-370 58-386 (412)
28 4h1g_A Maltose binding protein 100.0 8E-75 2.7E-79 711.0 24.0 319 8-367 374-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 2E-30 6.9E-35 232.3 5.8 98 287-388 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 3.9E-28 1.4E-32 225.6 10.0 87 291-381 1-87 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 4.3E-25 1.5E-29 229.8 2.0 262 8-370 24-293 (298)
32 1i84_S Smooth muscle myosin he 98.4 7.4E-08 2.5E-12 124.1 4.3 67 369-440 847-913 (1184)
33 1i84_S Smooth muscle myosin he 97.8 2.9E-05 9.9E-10 100.1 9.9 21 78-98 166-186 (1184)
34 3ol1_A Vimentin; structural ge 97.6 0.00047 1.6E-08 63.9 12.2 103 527-633 12-114 (119)
35 2fxo_A Myosin heavy chain, car 97.5 0.00025 8.6E-09 66.9 9.2 124 368-516 2-125 (129)
36 3o0z_A RHO-associated protein 97.3 0.00066 2.3E-08 65.5 8.5 133 411-548 5-138 (168)
37 3swk_A Vimentin; cytoskeleton, 96.9 0.0023 7.8E-08 55.5 7.8 83 537-623 2-84 (86)
38 1c1g_A Tropomyosin; contractIl 96.6 0.91 3.1E-05 47.1 41.8 24 538-561 2-25 (284)
39 2v71_A Nuclear distribution pr 96.0 1.4 4.7E-05 43.6 22.4 27 736-762 129-155 (189)
40 3o0z_A RHO-associated protein 95.9 0.4 1.4E-05 46.3 17.3 127 498-628 9-137 (168)
41 2dfs_A Myosin-5A; myosin-V, in 95.5 0.19 6.4E-06 63.7 17.3 87 497-596 955-1041(1080)
42 2dfs_A Myosin-5A; myosin-V, in 95.4 0.31 1.1E-05 61.7 18.9 87 583-669 958-1044(1080)
43 3na7_A HP0958; flagellar bioge 95.4 2.7 9.1E-05 44.1 23.3 18 607-624 109-126 (256)
44 3na7_A HP0958; flagellar bioge 95.3 2.8 9.5E-05 44.0 23.0 18 609-626 90-107 (256)
45 2fxo_A Myosin heavy chain, car 94.8 1 3.5E-05 42.0 15.8 53 568-623 73-125 (129)
46 3bas_A Myosin heavy chain, str 94.7 0.1 3.4E-06 45.6 8.0 70 367-441 2-71 (89)
47 1wt6_A Myotonin-protein kinase 93.3 0.38 1.3E-05 40.2 8.3 62 846-907 10-71 (81)
48 2efr_A General control protein 91.4 10 0.00035 36.2 21.7 90 535-635 42-131 (155)
49 3ec2_A DNA replication protein 90.8 0.026 8.8E-07 55.9 -1.8 50 47-98 6-55 (180)
50 1x79_B RAB GTPase binding effe 90.4 4.9 0.00017 36.1 12.7 72 660-770 32-103 (112)
51 3vkg_A Dynein heavy chain, cyt 90.1 77 0.0026 44.6 30.2 17 82-98 1305-1321(3245)
52 3tnu_B Keratin, type II cytosk 89.2 3.1 0.00011 38.7 11.3 73 796-910 43-115 (129)
53 3tnu_A Keratin, type I cytoske 89.0 3.3 0.00011 38.6 11.3 74 795-910 44-117 (131)
54 3oja_B Anopheles plasmodium-re 88.8 3.8 0.00013 48.4 14.7 52 646-697 528-579 (597)
55 3vkg_A Dynein heavy chain, cyt 88.7 64 0.0022 45.4 27.7 20 79-98 904-923 (3245)
56 2v66_B Nuclear distribution pr 88.0 15 0.0005 33.1 16.6 28 735-762 75-102 (111)
57 3oja_B Anopheles plasmodium-re 88.0 6.5 0.00022 46.3 15.9 10 541-550 476-485 (597)
58 4etp_B Spindle POLE BODY-assoc 87.8 0.52 1.8E-05 50.0 5.4 120 8-153 59-184 (333)
59 2w58_A DNAI, primosome compone 87.6 0.072 2.5E-06 53.6 -1.3 50 47-98 21-71 (202)
60 3t15_A Ribulose bisphosphate c 87.2 0.14 4.9E-06 55.1 0.7 48 50-98 2-53 (293)
61 2qgz_A Helicase loader, putati 87.1 0.086 2.9E-06 57.3 -1.1 28 71-98 142-169 (308)
62 2efr_A General control protein 86.2 24 0.00082 33.7 15.6 12 611-622 142-153 (155)
63 3s4r_A Vimentin; alpha-helix, 85.5 10 0.00035 33.0 11.6 72 533-624 21-92 (93)
64 3te6_A Regulatory protein SIR3 85.3 0.35 1.2E-05 52.5 2.6 23 76-98 40-62 (318)
65 1jbk_A CLPB protein; beta barr 85.0 0.28 9.7E-06 47.8 1.6 30 69-98 31-60 (195)
66 4b4t_M 26S protease regulatory 84.5 0.28 9.6E-06 55.7 1.4 79 47-126 177-274 (434)
67 2p65_A Hypothetical protein PF 82.5 0.39 1.3E-05 46.8 1.3 30 69-98 31-60 (187)
68 2bjv_A PSP operon transcriptio 82.3 0.36 1.2E-05 50.7 1.1 45 47-98 2-46 (265)
69 3s4r_A Vimentin; alpha-helix, 82.2 3.7 0.00012 35.9 7.3 38 525-562 46-83 (93)
70 1g8p_A Magnesium-chelatase 38 80.7 0.29 9.8E-06 53.6 -0.4 44 46-98 19-62 (350)
71 1l8q_A Chromosomal replication 80.6 0.35 1.2E-05 52.5 0.2 48 47-98 7-54 (324)
72 3uk6_A RUVB-like 2; hexameric 79.1 0.54 1.9E-05 51.8 1.2 46 47-98 40-87 (368)
73 3bas_A Myosin heavy chain, str 79.0 24 0.00082 30.3 11.4 22 597-618 65-86 (89)
74 3bos_A Putative DNA replicatio 79.0 0.75 2.6E-05 46.8 2.1 20 79-98 50-69 (242)
75 2x8a_A Nuclear valosin-contain 78.9 0.39 1.3E-05 51.1 -0.1 76 47-123 6-100 (274)
76 3oja_A Leucine-rich immune mol 78.5 24 0.00083 40.2 15.0 35 634-668 428-462 (487)
77 1qde_A EIF4A, translation init 78.2 0.78 2.7E-05 46.5 2.0 25 72-98 44-68 (224)
78 1p9r_A General secretion pathw 78.1 0.82 2.8E-05 51.7 2.3 28 71-98 157-184 (418)
79 1vec_A ATP-dependent RNA helic 77.8 0.88 3E-05 45.4 2.2 25 72-98 33-57 (206)
80 2r62_A Cell division protease 77.3 0.29 1E-05 51.4 -1.7 18 81-98 44-61 (268)
81 2ocy_A RAB guanine nucleotide 77.3 51 0.0017 31.3 18.7 63 603-668 73-135 (154)
82 2gxq_A Heat resistant RNA depe 77.0 0.92 3.1E-05 45.3 2.0 25 72-98 31-55 (207)
83 2kjq_A DNAA-related protein; s 76.6 1.5 5.3E-05 41.7 3.4 17 82-98 37-53 (149)
84 3cf0_A Transitional endoplasmi 76.6 0.32 1.1E-05 52.4 -1.6 51 47-98 11-66 (301)
85 2v71_A Nuclear distribution pr 76.5 61 0.0021 31.9 24.8 71 529-610 11-82 (189)
86 3h4m_A Proteasome-activating n 76.5 0.33 1.1E-05 51.5 -1.5 52 46-98 12-68 (285)
87 4b4t_K 26S protease regulatory 76.4 1.4 5E-05 49.7 3.7 78 47-125 168-264 (428)
88 3b6e_A Interferon-induced heli 76.1 2.2 7.4E-05 42.6 4.6 25 72-98 41-65 (216)
89 3b9p_A CG5977-PA, isoform A; A 76.1 0.35 1.2E-05 51.7 -1.6 51 47-98 17-71 (297)
90 3tnu_A Keratin, type I cytoske 75.5 50 0.0017 30.5 13.4 22 743-764 104-125 (131)
91 2eyu_A Twitching motility prot 74.9 1.3 4.5E-05 46.6 2.7 28 71-98 15-42 (261)
92 3jvv_A Twitching mobility prot 74.5 1.2 4.1E-05 49.2 2.3 30 69-98 111-140 (356)
93 3bor_A Human initiation factor 74.4 0.73 2.5E-05 47.5 0.5 26 71-98 59-84 (237)
94 3u1c_A Tropomyosin alpha-1 cha 74.2 41 0.0014 29.6 11.8 17 577-593 78-94 (101)
95 2chg_A Replication factor C sm 74.2 0.94 3.2E-05 45.2 1.3 21 78-98 35-55 (226)
96 3dkp_A Probable ATP-dependent 74.2 1.2 4E-05 46.0 2.0 26 71-98 58-83 (245)
97 1gk4_A Vimentin; intermediate 73.7 24 0.00082 30.0 9.8 41 860-910 26-66 (84)
98 2v1u_A Cell division control p 73.2 1 3.5E-05 49.6 1.3 20 79-98 42-61 (387)
99 3tnu_B Keratin, type II cytosk 72.7 58 0.002 29.9 14.1 22 743-764 102-123 (129)
100 2pl3_A Probable ATP-dependent 72.6 1.4 4.7E-05 45.2 2.0 25 72-98 55-79 (236)
101 3a7p_A Autophagy protein 16; c 72.4 60 0.002 30.6 12.8 18 675-692 131-148 (152)
102 2z4s_A Chromosomal replication 72.4 0.93 3.2E-05 51.7 0.7 17 82-98 131-147 (440)
103 4b4t_J 26S protease regulatory 72.1 1.8 6.3E-05 48.4 3.0 78 47-125 144-240 (405)
104 2c9o_A RUVB-like 1; hexameric 71.8 1.2 4E-05 51.0 1.4 46 47-98 33-80 (456)
105 1u0j_A DNA replication protein 71.7 1.4 4.9E-05 46.4 1.9 29 70-98 90-121 (267)
106 3d8b_A Fidgetin-like protein 1 71.6 0.5 1.7E-05 52.2 -1.7 20 79-98 115-134 (357)
107 1d2n_A N-ethylmaleimide-sensit 71.5 1.1 3.8E-05 47.1 1.1 21 78-98 61-81 (272)
108 1t6n_A Probable ATP-dependent 71.4 1.4 5E-05 44.4 1.9 25 72-98 44-68 (220)
109 1tue_A Replication protein E1; 71.2 1.1 3.9E-05 45.3 1.0 26 73-98 48-75 (212)
110 3ly5_A ATP-dependent RNA helic 71.0 1.1 3.9E-05 46.9 1.0 26 71-98 83-108 (262)
111 1xwi_A SKD1 protein; VPS4B, AA 71.0 0.53 1.8E-05 51.3 -1.7 51 47-98 8-62 (322)
112 4b4t_L 26S protease subunit RP 70.9 2.3 8E-05 48.1 3.6 78 47-125 177-273 (437)
113 3iuy_A Probable ATP-dependent 69.8 1.7 5.7E-05 44.3 1.9 25 72-98 50-74 (228)
114 3hnw_A Uncharacterized protein 69.7 42 0.0014 31.4 11.3 19 610-628 111-129 (138)
115 3fmo_B ATP-dependent RNA helic 69.5 1.7 5.9E-05 46.6 2.1 27 72-98 122-148 (300)
116 3llm_A ATP-dependent RNA helic 69.4 1.5 5.2E-05 45.0 1.5 27 70-98 67-93 (235)
117 1ixz_A ATP-dependent metallopr 69.1 1.7 5.8E-05 45.1 1.8 16 83-98 51-66 (254)
118 1wrb_A DJVLGB; RNA helicase, D 69.1 1.8 6.1E-05 44.9 2.0 25 72-98 53-77 (253)
119 2ewv_A Twitching motility prot 68.9 1.6 5.5E-05 48.5 1.7 29 70-98 125-153 (372)
120 1x8y_A Lamin A/C; structural p 68.7 14 0.00048 31.6 7.2 41 860-910 28-68 (86)
121 2v4h_A NF-kappa-B essential mo 68.7 43 0.0015 29.7 10.3 27 592-618 80-106 (110)
122 3fe2_A Probable ATP-dependent 68.3 1.7 5.9E-05 44.7 1.7 25 72-98 59-83 (242)
123 3u61_B DNA polymerase accessor 68.1 0.95 3.2E-05 48.9 -0.4 18 81-98 48-65 (324)
124 3co5_A Putative two-component 68.0 1.3 4.6E-05 41.6 0.7 19 80-98 26-44 (143)
125 3syl_A Protein CBBX; photosynt 68.0 1.9 6.5E-05 46.0 2.0 20 79-98 65-84 (309)
126 2oxc_A Probable ATP-dependent 67.6 2 6.9E-05 43.8 2.0 25 72-98 54-78 (230)
127 2qz4_A Paraplegin; AAA+, SPG7, 67.2 1.6 5.4E-05 45.3 1.1 20 79-98 37-56 (262)
128 3ber_A Probable ATP-dependent 67.1 2.1 7.2E-05 44.4 2.0 25 72-98 73-97 (249)
129 3n70_A Transport activator; si 67.0 1.8 6E-05 40.9 1.3 20 79-98 22-41 (145)
130 1sxj_D Activator 1 41 kDa subu 66.7 2 6.7E-05 46.8 1.8 29 70-98 47-75 (353)
131 3pfi_A Holliday junction ATP-d 66.5 1.9 6.6E-05 46.7 1.7 20 79-98 53-72 (338)
132 3vfd_A Spastin; ATPase, microt 65.8 0.63 2.1E-05 52.0 -2.5 18 81-98 148-165 (389)
133 3oja_A Leucine-rich immune mol 65.7 95 0.0032 35.2 16.0 35 626-660 434-468 (487)
134 4b4t_H 26S protease regulatory 65.5 3.1 0.00011 47.3 3.1 77 48-125 206-301 (467)
135 1q0u_A Bstdead; DEAD protein, 65.1 1.5 5.1E-05 44.4 0.4 25 72-98 34-58 (219)
136 3nmd_A CGMP dependent protein 65.0 20 0.00067 29.5 6.8 22 533-554 45-66 (72)
137 4b4t_I 26S protease regulatory 64.9 3.9 0.00013 46.0 3.7 79 47-126 178-275 (437)
138 3eiq_A Eukaryotic initiation f 64.8 2.5 8.5E-05 46.9 2.2 26 71-98 69-94 (414)
139 3mq9_A Bone marrow stromal ant 63.8 1.2E+02 0.004 34.2 16.2 40 643-693 431-470 (471)
140 3iv1_A Tumor susceptibility ge 63.6 61 0.0021 27.0 9.7 24 604-627 13-36 (78)
141 2eqb_B RAB guanine nucleotide 63.4 76 0.0026 27.6 11.0 13 607-619 81-93 (97)
142 1lv7_A FTSH; alpha/beta domain 63.3 2.1 7.3E-05 44.4 1.2 18 81-98 45-62 (257)
143 3fmp_B ATP-dependent RNA helic 63.0 2.7 9.4E-05 48.0 2.1 27 72-98 122-148 (479)
144 3iox_A AGI/II, PA; alpha helix 62.8 1.8E+02 0.0062 32.7 16.4 76 531-624 5-81 (497)
145 2qp9_X Vacuolar protein sortin 62.8 1 3.6E-05 49.6 -1.4 51 47-98 47-101 (355)
146 1gvn_B Zeta; postsegregational 62.6 2.8 9.6E-05 44.7 2.0 34 65-98 12-50 (287)
147 1iy2_A ATP-dependent metallopr 62.5 2.8 9.5E-05 44.2 1.9 16 83-98 75-90 (278)
148 2oap_1 GSPE-2, type II secreti 62.3 2.4 8E-05 49.3 1.4 19 78-98 259-277 (511)
149 2fz4_A DNA repair protein RAD2 62.0 2.7 9.3E-05 43.3 1.7 25 72-98 101-125 (237)
150 3qh9_A Liprin-beta-2; coiled-c 61.5 70 0.0024 26.7 9.6 62 850-911 16-77 (81)
151 1fnn_A CDC6P, cell division co 61.4 2.5 8.4E-05 46.6 1.3 29 70-98 30-61 (389)
152 2qby_A CDC6 homolog 1, cell di 61.4 1.9 6.5E-05 47.3 0.4 20 79-98 43-62 (386)
153 3fht_A ATP-dependent RNA helic 60.9 3.2 0.00011 46.0 2.1 28 71-98 54-81 (412)
154 2zan_A Vacuolar protein sortin 60.6 1 3.4E-05 51.4 -2.1 17 82-98 168-184 (444)
155 1sxj_C Activator 1 40 kDa subu 60.5 2.6 8.8E-05 45.9 1.3 27 72-98 37-63 (340)
156 3pey_A ATP-dependent RNA helic 60.0 3.2 0.00011 45.5 2.0 28 71-98 34-61 (395)
157 2j0s_A ATP-dependent RNA helic 60.0 3.1 0.00011 46.2 1.8 25 72-98 67-91 (410)
158 1s1c_X RHO-associated, coiled- 59.4 64 0.0022 26.4 8.9 44 864-907 17-62 (71)
159 1ofh_A ATP-dependent HSL prote 58.9 2.5 8.4E-05 45.0 0.7 18 81-98 50-67 (310)
160 1njg_A DNA polymerase III subu 58.8 2.8 9.7E-05 42.1 1.2 17 82-98 46-62 (250)
161 2qby_B CDC6 homolog 3, cell di 58.6 3.4 0.00011 45.5 1.8 28 71-98 34-62 (384)
162 4b3f_X DNA-binding protein smu 58.6 3.3 0.00011 49.6 1.8 26 72-98 197-222 (646)
163 1s2m_A Putative ATP-dependent 58.4 3.2 0.00011 45.8 1.6 25 72-98 51-75 (400)
164 2z0m_A 337AA long hypothetical 58.2 3.5 0.00012 44.1 1.8 25 72-98 24-48 (337)
165 1n0w_A DNA repair protein RAD5 58.2 3.7 0.00013 41.8 1.9 30 69-98 9-41 (243)
166 2i1j_A Moesin; FERM, coiled-co 57.8 30 0.001 40.6 9.7 94 574-674 338-431 (575)
167 1iqp_A RFCS; clamp loader, ext 57.1 3.1 0.00011 44.5 1.2 22 77-98 42-63 (327)
168 3eie_A Vacuolar protein sortin 57.1 2.8 9.6E-05 45.3 0.8 51 47-98 14-68 (322)
169 1e9r_A Conjugal transfer prote 56.9 2.7 9.2E-05 47.5 0.6 19 80-98 52-70 (437)
170 1c4o_A DNA nucleotide excision 56.8 5.5 0.00019 47.8 3.4 83 48-137 2-88 (664)
171 2jlq_A Serine protease subunit 56.6 3.4 0.00012 47.0 1.5 26 72-98 11-36 (451)
172 4fcw_A Chaperone protein CLPB; 56.5 2.4 8.2E-05 45.2 0.1 17 82-98 48-64 (311)
173 3ghg_A Fibrinogen alpha chain; 56.2 2.6E+02 0.009 31.6 16.2 23 675-697 133-155 (562)
174 3fho_A ATP-dependent RNA helic 56.1 4.1 0.00014 47.1 2.0 27 72-98 149-175 (508)
175 2chq_A Replication factor C sm 55.8 2.9 0.0001 44.5 0.7 21 78-98 35-55 (319)
176 2i4i_A ATP-dependent RNA helic 55.7 4.1 0.00014 45.2 1.9 25 72-98 45-69 (417)
177 2w0m_A SSO2452; RECA, SSPF, un 55.3 4.6 0.00016 40.6 2.0 29 70-98 9-40 (235)
178 3mov_A Lamin-B1; LMNB1, B-type 55.2 29 0.001 30.2 6.8 39 861-909 38-76 (95)
179 1f5n_A Interferon-induced guan 55.0 3E+02 0.01 32.1 17.6 21 78-98 35-55 (592)
180 4gp7_A Metallophosphoesterase; 54.5 3.3 0.00011 40.1 0.8 16 83-98 11-26 (171)
181 2cvh_A DNA repair and recombin 54.3 4.7 0.00016 40.2 1.9 29 70-98 6-37 (220)
182 3pvs_A Replication-associated 54.3 4.2 0.00014 46.3 1.7 29 70-98 39-67 (447)
183 1sxj_E Activator 1 40 kDa subu 53.9 4.2 0.00014 44.2 1.5 15 84-98 39-53 (354)
184 1uix_A RHO-associated kinase; 53.6 91 0.0031 25.5 9.4 41 867-907 18-62 (71)
185 1hqc_A RUVB; extended AAA-ATPa 53.4 4.6 0.00016 43.2 1.8 20 79-98 36-55 (324)
186 1in4_A RUVB, holliday junction 53.2 3.3 0.00011 45.0 0.6 17 82-98 52-68 (334)
187 3oiy_A Reverse gyrase helicase 52.9 4.5 0.00015 45.1 1.6 26 71-98 28-53 (414)
188 3h1t_A Type I site-specific re 52.8 4.3 0.00015 47.8 1.5 24 74-98 192-215 (590)
189 3b85_A Phosphate starvation-in 52.6 5 0.00017 40.5 1.7 26 71-98 14-39 (208)
190 2qag_C Septin-7; cell cycle, c 52.3 3.9 0.00013 46.1 1.0 23 76-98 26-48 (418)
191 2r44_A Uncharacterized protein 52.0 2.6 8.9E-05 45.6 -0.6 26 71-98 38-63 (331)
192 1rif_A DAR protein, DNA helica 51.5 3.6 0.00012 43.4 0.5 25 72-98 121-145 (282)
193 2e7s_A RAB guanine nucleotide 51.4 25 0.00085 32.6 6.0 16 607-622 44-59 (135)
194 1xti_A Probable ATP-dependent 51.4 5.3 0.00018 43.8 1.9 25 72-98 38-62 (391)
195 2p5t_B PEZT; postsegregational 51.2 4.6 0.00016 41.9 1.3 34 65-98 11-49 (253)
196 4a74_A DNA repair and recombin 51.1 5.9 0.0002 39.8 2.0 30 69-98 10-42 (231)
197 3ghg_A Fibrinogen alpha chain; 50.9 92 0.0032 35.2 11.5 23 534-556 63-85 (562)
198 3u59_A Tropomyosin beta chain; 50.9 1.3E+02 0.0043 26.3 11.8 16 578-593 79-94 (101)
199 2v1x_A ATP-dependent DNA helic 50.3 6.7 0.00023 46.3 2.6 26 71-98 51-76 (591)
200 1w5s_A Origin recognition comp 49.8 4.9 0.00017 44.5 1.3 25 74-98 40-69 (412)
201 1go4_E MAD1 (mitotic arrest de 49.7 93 0.0032 27.3 9.0 28 533-560 17-44 (100)
202 3i5x_A ATP-dependent RNA helic 49.6 6.6 0.00023 45.8 2.4 27 72-98 102-128 (563)
203 3pxg_A Negative regulator of g 49.5 5.9 0.0002 45.3 1.9 29 70-98 190-218 (468)
204 4gkw_A Spindle assembly abnorm 49.3 1.5E+02 0.0052 26.8 20.8 88 654-765 73-161 (167)
205 1sxj_B Activator 1 37 kDa subu 49.1 5.4 0.00018 42.4 1.4 22 77-98 38-59 (323)
206 2e7s_A RAB guanine nucleotide 49.1 35 0.0012 31.6 6.6 61 605-668 63-123 (135)
207 3tau_A Guanylate kinase, GMP k 49.1 5.2 0.00018 40.1 1.3 17 82-98 9-25 (208)
208 2db3_A ATP-dependent RNA helic 49.1 5.9 0.0002 44.6 1.8 25 72-98 86-110 (434)
209 2qnr_A Septin-2, protein NEDD5 49.0 4.5 0.00015 43.4 0.8 23 76-98 13-35 (301)
210 3a00_A Guanylate kinase, GMP k 48.9 4.5 0.00015 39.7 0.7 16 83-98 3-18 (186)
211 2dr3_A UPF0273 protein PH0284; 48.9 6 0.00021 40.2 1.7 28 71-98 10-40 (247)
212 3hws_A ATP-dependent CLP prote 48.8 4.6 0.00016 44.3 0.9 18 81-98 51-68 (363)
213 1ojl_A Transcriptional regulat 48.8 5.2 0.00018 42.9 1.2 20 79-98 23-42 (304)
214 3c8u_A Fructokinase; YP_612366 48.7 6.4 0.00022 39.3 1.8 29 70-98 9-39 (208)
215 2jee_A YIIU; FTSZ, septum, coi 48.6 1.2E+02 0.0041 25.5 10.7 46 611-660 22-67 (81)
216 1kgd_A CASK, peripheral plasma 48.6 4.7 0.00016 39.4 0.7 16 83-98 7-22 (180)
217 1um8_A ATP-dependent CLP prote 48.6 4.7 0.00016 44.5 0.9 18 81-98 72-89 (376)
218 3u1c_A Tropomyosin alpha-1 cha 48.5 1.4E+02 0.0048 26.1 14.5 18 602-619 79-96 (101)
219 3tr0_A Guanylate kinase, GMP k 48.4 4.8 0.00016 39.8 0.8 16 83-98 9-24 (205)
220 3lw7_A Adenylate kinase relate 48.1 5.3 0.00018 37.9 1.1 16 83-98 3-18 (179)
221 1hv8_A Putative ATP-dependent 48.0 6 0.00021 42.7 1.6 26 72-98 36-61 (367)
222 3hu3_A Transitional endoplasmi 48.0 6.7 0.00023 45.2 2.0 20 79-98 236-255 (489)
223 1fuu_A Yeast initiation factor 47.9 3.9 0.00013 44.9 0.1 25 72-98 51-75 (394)
224 4a2p_A RIG-I, retinoic acid in 47.4 6.8 0.00023 45.2 2.0 25 72-98 15-39 (556)
225 2v4h_A NF-kappa-B essential mo 47.4 1.5E+02 0.0052 26.3 12.4 85 796-913 24-108 (110)
226 1rz3_A Hypothetical protein rb 47.3 6.3 0.00021 39.2 1.5 30 69-98 7-39 (201)
227 1lvg_A Guanylate kinase, GMP k 47.2 4.8 0.00016 40.1 0.6 16 83-98 6-21 (198)
228 3lay_A Zinc resistance-associa 46.9 39 0.0013 33.0 7.0 54 570-626 77-130 (175)
229 4ag6_A VIRB4 ATPase, type IV s 46.8 5 0.00017 44.6 0.7 18 81-98 35-52 (392)
230 3i00_A HIP-I, huntingtin-inter 46.4 1E+02 0.0036 28.0 9.3 46 574-622 36-81 (120)
231 2ke4_A CDC42-interacting prote 46.2 1.3E+02 0.0043 26.3 9.5 59 497-560 17-87 (98)
232 1qvr_A CLPB protein; coiled co 46.2 4.3 0.00015 50.3 0.0 30 69-98 179-208 (854)
233 1w36_D RECD, exodeoxyribonucle 45.8 5.4 0.00018 47.3 0.8 18 81-98 164-181 (608)
234 3sjb_C Golgi to ER traffic pro 45.5 1E+02 0.0036 26.5 8.5 61 376-436 20-80 (93)
235 2gk6_A Regulator of nonsense t 45.5 7.1 0.00024 46.4 1.8 25 72-98 188-212 (624)
236 2r8r_A Sensor protein; KDPD, P 45.4 5.3 0.00018 41.0 0.6 17 82-98 7-23 (228)
237 3tbk_A RIG-I helicase domain; 45.4 7.7 0.00026 44.7 2.0 25 72-98 12-36 (555)
238 1zp6_A Hypothetical protein AT 45.2 5.6 0.00019 38.9 0.7 17 82-98 10-26 (191)
239 3sop_A Neuronal-specific septi 45.1 5.6 0.00019 41.9 0.7 19 80-98 1-19 (270)
240 2fwr_A DNA repair protein RAD2 45.1 7.3 0.00025 44.3 1.8 25 72-98 101-125 (472)
241 1ye8_A Protein THEP1, hypothet 45.0 5.4 0.00019 39.1 0.6 15 84-98 3-17 (178)
242 3upu_A ATP-dependent DNA helic 44.6 7 0.00024 44.5 1.5 26 72-98 37-62 (459)
243 3mq7_A Bone marrow stromal ant 44.3 1.7E+02 0.006 26.1 14.5 15 610-624 54-68 (121)
244 3i00_A HIP-I, huntingtin-inter 44.2 83 0.0028 28.6 8.3 21 529-549 41-61 (120)
245 2ocy_A RAB guanine nucleotide 43.8 2.2E+02 0.0074 27.0 19.5 21 677-697 119-139 (154)
246 3lfu_A DNA helicase II; SF1 he 43.6 7 0.00024 46.4 1.4 22 77-98 18-39 (647)
247 3nbx_X ATPase RAVA; AAA+ ATPas 43.6 6.4 0.00022 45.4 0.9 27 70-98 32-58 (500)
248 1rj9_A FTSY, signal recognitio 43.4 7 0.00024 41.9 1.2 17 82-98 103-119 (304)
249 3cf2_A TER ATPase, transitiona 43.1 6.1 0.00021 48.2 0.7 50 75-124 228-295 (806)
250 1deq_A Fibrinogen (alpha chain 43.0 3.6E+02 0.012 29.3 17.6 88 600-698 58-145 (390)
251 4gl2_A Interferon-induced heli 42.9 8.4 0.00029 46.2 1.9 26 71-98 14-39 (699)
252 3sja_C Golgi to ER traffic pro 42.9 83 0.0028 25.3 6.9 52 378-429 5-56 (65)
253 1ly1_A Polynucleotide kinase; 42.6 7.2 0.00025 37.4 1.0 16 83-98 4-19 (181)
254 2i1j_A Moesin; FERM, coiled-co 42.5 33 0.0011 40.2 6.8 49 503-556 336-384 (575)
255 4h22_A Leucine-rich repeat fli 42.4 1.8E+02 0.006 25.6 9.9 51 580-633 4-54 (103)
256 3sqw_A ATP-dependent RNA helic 42.3 10 0.00034 44.5 2.4 27 72-98 51-77 (579)
257 3trf_A Shikimate kinase, SK; a 42.2 7.3 0.00025 37.8 1.0 16 83-98 7-22 (185)
258 1qhx_A CPT, protein (chloramph 42.0 7.8 0.00027 37.3 1.2 17 82-98 4-20 (178)
259 1jr3_A DNA polymerase III subu 41.9 7.4 0.00025 42.4 1.1 18 81-98 38-55 (373)
260 3mq9_A Bone marrow stromal ant 41.8 2.6E+02 0.0088 31.3 14.3 14 194-207 139-152 (471)
261 3b9q_A Chloroplast SRP recepto 41.7 6.9 0.00024 42.0 0.8 16 83-98 102-117 (302)
262 2pt7_A CAG-ALFA; ATPase, prote 41.6 6.6 0.00023 42.7 0.7 19 78-98 170-188 (330)
263 2j41_A Guanylate kinase; GMP, 41.6 7 0.00024 38.6 0.8 16 83-98 8-23 (207)
264 3lnc_A Guanylate kinase, GMP k 40.9 8.1 0.00028 39.2 1.2 16 83-98 29-44 (231)
265 2gza_A Type IV secretion syste 40.9 6.6 0.00023 43.2 0.5 19 78-98 174-192 (361)
266 2bdt_A BH3686; alpha-beta prot 40.9 7.2 0.00025 38.1 0.7 16 83-98 4-19 (189)
267 3mq7_A Bone marrow stromal ant 40.7 2E+02 0.0068 25.7 12.5 47 856-902 60-106 (121)
268 2ehv_A Hypothetical protein PH 40.7 7.5 0.00026 39.6 0.9 17 82-98 31-47 (251)
269 1sxj_A Activator 1 95 kDa subu 40.6 7.8 0.00027 44.9 1.1 18 81-98 77-94 (516)
270 1ypw_A Transitional endoplasmi 40.5 6.9 0.00023 48.1 0.6 43 82-124 239-295 (806)
271 1odf_A YGR205W, hypothetical 3 39.9 8.8 0.0003 40.8 1.3 20 79-98 29-48 (290)
272 1znw_A Guanylate kinase, GMP k 39.8 7.7 0.00026 38.7 0.7 16 83-98 22-37 (207)
273 3iij_A Coilin-interacting nucl 39.7 8 0.00027 37.4 0.9 16 83-98 13-28 (180)
274 2oxj_A Hybrid alpha/beta pepti 39.6 30 0.001 23.8 3.3 24 537-560 3-26 (34)
275 2b8t_A Thymidine kinase; deoxy 39.5 6.8 0.00023 40.1 0.3 17 82-98 13-29 (223)
276 1moz_A ARL1, ADP-ribosylation 39.5 9.8 0.00033 36.4 1.5 29 70-98 6-35 (183)
277 2whx_A Serine protease/ntpase/ 39.5 9 0.00031 45.5 1.4 24 73-98 180-203 (618)
278 1z6g_A Guanylate kinase; struc 39.5 7.4 0.00025 39.4 0.6 16 83-98 25-40 (218)
279 3swy_A Cyclic nucleotide-gated 39.4 1.2E+02 0.004 22.7 6.8 44 532-586 2-45 (46)
280 2ykg_A Probable ATP-dependent 39.3 11 0.00036 45.3 2.0 25 72-98 21-45 (696)
281 3swf_A CGMP-gated cation chann 39.3 1.2E+02 0.0041 25.0 7.5 45 533-588 5-49 (74)
282 4gkw_A Spindle assembly abnorm 39.1 2.2E+02 0.0076 25.8 22.1 59 499-562 15-73 (167)
283 3pxi_A Negative regulator of g 39.0 11 0.00037 45.9 2.1 16 83-98 523-538 (758)
284 1wp9_A ATP-dependent RNA helic 39.0 10 0.00036 42.3 1.8 24 72-98 17-40 (494)
285 1gd2_E Transcription factor PA 38.8 61 0.0021 26.5 5.8 24 570-593 21-44 (70)
286 2b5u_A Colicin E3; high resolu 38.8 4.7E+02 0.016 29.4 20.2 94 676-770 349-449 (551)
287 3kta_A Chromosome segregation 38.8 8.2 0.00028 37.3 0.8 16 83-98 28-43 (182)
288 3uie_A Adenylyl-sulfate kinase 38.7 11 0.00036 37.4 1.6 18 81-98 25-42 (200)
289 1f2t_A RAD50 ABC-ATPase; DNA d 38.7 9 0.00031 36.3 1.0 16 83-98 25-40 (149)
290 1g41_A Heat shock protein HSLU 38.6 13 0.00044 42.1 2.4 17 82-98 51-67 (444)
291 2xzl_A ATP-dependent helicase 38.5 10 0.00035 46.4 1.8 24 73-98 369-392 (802)
292 2i3b_A HCR-ntpase, human cance 38.5 8 0.00027 38.3 0.6 16 83-98 3-18 (189)
293 3etw_A Adhesin A; antiparallel 38.3 2.3E+02 0.0077 25.7 13.6 38 577-616 8-45 (119)
294 1l8d_A DNA double-strand break 38.3 2.1E+02 0.007 25.2 11.6 27 535-561 17-43 (112)
295 3e1s_A Exodeoxyribonuclease V, 38.1 11 0.00037 44.3 1.8 26 71-98 196-221 (574)
296 2px0_A Flagellar biosynthesis 38.1 9 0.00031 40.9 1.0 17 82-98 106-122 (296)
297 1kht_A Adenylate kinase; phosp 38.1 9.8 0.00034 36.8 1.2 17 82-98 4-20 (192)
298 2bbw_A Adenylate kinase 4, AK4 38.1 8.5 0.00029 39.5 0.8 17 82-98 28-44 (246)
299 2orw_A Thymidine kinase; TMTK, 38.1 7.8 0.00027 38.1 0.5 16 83-98 5-20 (184)
300 3pxi_A Negative regulator of g 37.9 11 0.00039 45.7 2.0 29 70-98 190-218 (758)
301 2ze6_A Isopentenyl transferase 37.3 9.6 0.00033 39.5 1.0 16 83-98 3-18 (253)
302 4a4z_A Antiviral helicase SKI2 37.3 12 0.00041 47.1 2.1 25 71-97 46-70 (997)
303 2wjy_A Regulator of nonsense t 37.1 11 0.00039 46.0 1.8 24 73-98 365-388 (800)
304 3c3f_A Alpha/beta peptide with 37.0 35 0.0012 23.4 3.3 25 536-560 2-26 (34)
305 1kag_A SKI, shikimate kinase I 37.0 9.6 0.00033 36.4 0.9 16 83-98 6-21 (173)
306 3vaa_A Shikimate kinase, SK; s 36.9 10 0.00034 37.5 1.1 16 83-98 27-42 (199)
307 1uaa_A REP helicase, protein ( 36.7 10 0.00034 45.5 1.2 19 80-98 14-32 (673)
308 2qmh_A HPR kinase/phosphorylas 36.7 9.9 0.00034 38.2 1.0 21 78-98 31-51 (205)
309 1gm5_A RECG; helicase, replica 36.6 9.6 0.00033 46.5 1.0 29 70-98 378-406 (780)
310 1gmj_A ATPase inhibitor; coile 36.5 1.1E+02 0.0037 25.9 7.0 26 599-624 41-66 (84)
311 1qvr_A CLPB protein; coiled co 36.5 12 0.00042 46.1 2.0 17 82-98 589-605 (854)
312 2dhr_A FTSH; AAA+ protein, hex 36.4 8.7 0.0003 44.3 0.6 16 83-98 66-81 (499)
313 1m1j_B Fibrinogen beta chain; 36.4 4.7E+02 0.016 29.4 14.6 12 507-518 98-109 (464)
314 2og2_A Putative signal recogni 36.3 9.4 0.00032 42.0 0.8 16 83-98 159-174 (359)
315 1r6b_X CLPA protein; AAA+, N-t 36.2 11 0.00038 45.8 1.5 29 70-98 196-224 (758)
316 1knq_A Gluconate kinase; ALFA/ 36.0 9.7 0.00033 36.5 0.8 16 83-98 10-25 (175)
317 3e70_C DPA, signal recognition 36.0 9.4 0.00032 41.4 0.7 17 82-98 130-146 (328)
318 3a7p_A Autophagy protein 16; c 35.9 2.8E+02 0.0097 26.1 10.7 63 496-558 69-133 (152)
319 1r6b_X CLPA protein; AAA+, N-t 35.7 14 0.00046 45.0 2.2 17 82-98 489-505 (758)
320 1cr0_A DNA primase/helicase; R 35.7 12 0.00041 39.5 1.5 28 71-98 23-52 (296)
321 2ce7_A Cell division protein F 35.5 13 0.00043 42.7 1.7 17 82-98 50-66 (476)
322 3t5d_A Septin-7; GTP-binding p 35.5 9.7 0.00033 39.9 0.7 21 78-98 5-25 (274)
323 1v5w_A DMC1, meiotic recombina 35.5 15 0.00051 40.0 2.3 30 69-98 107-139 (343)
324 3kb2_A SPBC2 prophage-derived 35.4 11 0.00037 35.8 1.0 16 83-98 3-18 (173)
325 2oca_A DAR protein, ATP-depend 35.3 10 0.00036 43.4 1.0 25 72-98 121-145 (510)
326 1ci6_A Transcription factor AT 35.2 1.6E+02 0.0056 23.3 7.8 44 571-624 16-59 (63)
327 2r2a_A Uncharacterized protein 35.0 9.6 0.00033 38.1 0.6 16 83-98 7-22 (199)
328 4a2q_A RIG-I, retinoic acid in 34.7 14 0.00048 45.2 2.0 25 72-98 256-280 (797)
329 2oqq_A Transcription factor HY 34.6 92 0.0031 22.6 5.3 27 530-556 12-38 (42)
330 2w83_C C-JUN-amino-terminal ki 34.6 1E+02 0.0035 25.5 6.3 45 571-618 30-74 (77)
331 1oyw_A RECQ helicase, ATP-depe 34.5 8.2 0.00028 44.8 -0.1 26 71-98 32-57 (523)
332 2qor_A Guanylate kinase; phosp 34.4 10 0.00035 37.7 0.6 16 83-98 14-29 (204)
333 3iox_A AGI/II, PA; alpha helix 34.3 5.5E+02 0.019 28.9 15.1 75 528-623 27-101 (497)
334 2v6i_A RNA helicase; membrane, 34.3 15 0.0005 41.4 2.0 16 83-98 4-19 (431)
335 1deb_A APC protein, adenomatou 34.0 1.1E+02 0.0036 23.1 5.8 35 645-679 14-48 (54)
336 4a2w_A RIG-I, retinoic acid in 33.8 14 0.00048 46.2 1.9 25 72-98 256-280 (936)
337 2yhs_A FTSY, cell division pro 33.7 11 0.00038 43.2 0.9 16 83-98 295-310 (503)
338 3cm0_A Adenylate kinase; ATP-b 33.7 12 0.00042 36.1 1.1 16 83-98 6-21 (186)
339 3asz_A Uridine kinase; cytidin 33.4 11 0.00037 37.5 0.6 16 83-98 8-23 (211)
340 3u59_A Tropomyosin beta chain; 33.3 2.4E+02 0.0082 24.5 14.5 17 603-619 80-96 (101)
341 1htw_A HI0065; nucleotide-bind 33.3 11 0.00039 36.0 0.7 16 83-98 35-50 (158)
342 2z83_A Helicase/nucleoside tri 33.1 15 0.00051 41.7 1.8 16 83-98 23-38 (459)
343 3crm_A TRNA delta(2)-isopenten 33.0 14 0.00049 39.9 1.6 17 82-98 6-22 (323)
344 1uf9_A TT1252 protein; P-loop, 33.0 14 0.00049 36.1 1.5 21 78-98 5-25 (203)
345 2qag_A Septin-2, protein NEDD5 33.0 12 0.0004 41.2 0.9 24 75-98 31-54 (361)
346 1s96_A Guanylate kinase, GMP k 32.9 12 0.0004 38.1 0.8 16 83-98 18-33 (219)
347 2rhm_A Putative kinase; P-loop 32.9 12 0.0004 36.4 0.8 17 82-98 6-22 (193)
348 1pzn_A RAD51, DNA repair and r 32.9 17 0.00057 39.7 2.1 30 69-98 116-148 (349)
349 3tif_A Uncharacterized ABC tra 32.8 11 0.00039 38.5 0.7 16 83-98 33-48 (235)
350 1vma_A Cell division protein F 32.8 13 0.00046 39.8 1.3 17 82-98 105-121 (306)
351 1y63_A LMAJ004144AAA protein; 32.8 12 0.00041 36.4 0.9 16 83-98 12-27 (184)
352 1tev_A UMP-CMP kinase; ploop, 32.7 13 0.00044 36.1 1.0 16 83-98 5-20 (196)
353 2fna_A Conserved hypothetical 32.5 14 0.00047 39.7 1.4 17 82-98 31-47 (357)
354 1xx6_A Thymidine kinase; NESG, 32.2 9.4 0.00032 38.0 -0.1 16 83-98 10-25 (191)
355 3mov_A Lamin-B1; LMNB1, B-type 32.2 2.5E+02 0.0085 24.3 9.5 53 645-697 9-61 (95)
356 3hnw_A Uncharacterized protein 32.1 3.1E+02 0.011 25.4 13.5 45 861-905 83-127 (138)
357 4eun_A Thermoresistant glucoki 32.0 12 0.00042 36.9 0.8 16 83-98 31-46 (200)
358 2zj8_A DNA helicase, putative 32.0 12 0.00039 45.3 0.7 21 76-98 36-56 (720)
359 1x79_B RAB GTPase binding effe 32.0 2.8E+02 0.0095 24.8 13.0 75 611-685 8-82 (112)
360 2z43_A DNA repair and recombin 31.9 17 0.00057 39.2 1.9 30 69-98 92-124 (324)
361 3umf_A Adenylate kinase; rossm 31.8 13 0.00045 37.7 1.0 15 83-97 31-45 (217)
362 1e6c_A Shikimate kinase; phosp 31.4 13 0.00045 35.3 0.9 16 83-98 4-19 (173)
363 2d7d_A Uvrabc system protein B 31.4 19 0.00066 43.0 2.5 46 48-99 5-50 (661)
364 1yks_A Genome polyprotein [con 31.3 15 0.00052 41.4 1.5 21 76-98 5-25 (440)
365 2qen_A Walker-type ATPase; unk 31.2 15 0.00051 39.3 1.4 17 82-98 32-48 (350)
366 1kd8_B GABH BLL, GCN4 acid bas 31.1 49 0.0017 23.0 3.3 22 537-558 3-24 (36)
367 1nks_A Adenylate kinase; therm 31.0 13 0.00045 35.9 0.8 16 83-98 3-18 (194)
368 3jsv_C NF-kappa-B essential mo 30.9 2.6E+02 0.0089 24.1 9.3 33 590-622 56-88 (94)
369 2i1q_A DNA repair and recombin 30.8 19 0.00064 38.6 2.1 31 68-98 82-115 (322)
370 3ney_A 55 kDa erythrocyte memb 30.7 13 0.00045 37.1 0.7 16 83-98 21-36 (197)
371 3sr0_A Adenylate kinase; phosp 30.6 14 0.00047 37.2 0.9 14 84-97 3-16 (206)
372 2iut_A DNA translocase FTSK; n 30.6 12 0.00042 43.6 0.6 18 81-98 214-231 (574)
373 2zr9_A Protein RECA, recombina 30.6 18 0.00062 39.5 1.9 32 67-98 43-78 (349)
374 3rc3_A ATP-dependent RNA helic 30.5 13 0.00046 44.4 0.9 15 83-97 157-171 (677)
375 1w4r_A Thymidine kinase; type 30.4 15 0.00051 36.6 1.1 16 81-96 20-35 (195)
376 3qh9_A Liprin-beta-2; coiled-c 30.4 2.4E+02 0.0081 23.6 8.0 40 582-624 23-62 (81)
377 1l8d_A DNA double-strand break 30.2 2.8E+02 0.0095 24.3 10.6 79 738-822 11-90 (112)
378 3m6a_A ATP-dependent protease 30.2 13 0.00045 43.2 0.7 18 81-98 108-125 (543)
379 2vli_A Antibiotic resistance p 30.1 15 0.00052 35.3 1.1 17 82-98 6-22 (183)
380 2iyv_A Shikimate kinase, SK; t 29.9 14 0.00049 35.6 0.9 16 83-98 4-19 (184)
381 1via_A Shikimate kinase; struc 29.8 15 0.00051 35.3 0.9 16 83-98 6-21 (175)
382 2bwj_A Adenylate kinase 5; pho 29.7 15 0.00051 35.8 0.9 16 83-98 14-29 (199)
383 1svm_A Large T antigen; AAA+ f 29.7 15 0.0005 40.7 0.9 17 82-98 170-186 (377)
384 3iv1_A Tumor susceptibility ge 29.6 2.5E+02 0.0084 23.4 9.9 51 571-624 11-61 (78)
385 3t61_A Gluconokinase; PSI-biol 29.5 15 0.00051 36.2 0.9 17 82-98 19-35 (202)
386 2ga8_A Hypothetical 39.9 kDa p 29.5 18 0.00062 39.6 1.6 21 78-98 21-41 (359)
387 2wq1_A General control protein 29.5 75 0.0026 21.7 3.9 22 537-558 2-23 (33)
388 2k48_A Nucleoprotein; viral pr 29.4 2.9E+02 0.0099 24.2 9.0 13 580-592 84-96 (107)
389 3qks_A DNA double-strand break 29.3 16 0.00053 36.5 1.0 16 83-98 25-40 (203)
390 2pt5_A Shikimate kinase, SK; a 29.1 16 0.00056 34.5 1.1 16 83-98 2-17 (168)
391 2xgj_A ATP-dependent RNA helic 29.1 17 0.00058 45.7 1.5 25 72-98 94-118 (1010)
392 2b6h_A ADP-ribosylation factor 29.0 17 0.00057 35.5 1.1 29 70-98 18-46 (192)
393 1gku_B Reverse gyrase, TOP-RG; 29.0 20 0.00068 45.4 2.1 23 72-96 64-86 (1054)
394 3foz_A TRNA delta(2)-isopenten 28.9 16 0.00055 39.2 1.1 16 83-98 12-27 (316)
395 1xjc_A MOBB protein homolog; s 28.9 15 0.00051 35.7 0.7 16 83-98 6-21 (169)
396 2cdn_A Adenylate kinase; phosp 28.8 19 0.00065 35.4 1.5 19 80-98 19-37 (201)
397 1pjr_A PCRA; DNA repair, DNA r 28.8 16 0.00054 44.2 1.1 19 80-98 23-41 (724)
398 3l9o_A ATP-dependent RNA helic 28.6 17 0.00057 46.3 1.3 26 71-98 191-216 (1108)
399 3c3g_A Alpha/beta peptide with 28.6 79 0.0027 21.6 3.9 23 537-559 2-24 (33)
400 2zts_A Putative uncharacterize 28.6 19 0.00065 36.4 1.5 30 69-98 15-47 (251)
401 1t3j_A Mitofusin 1; coiled coi 28.5 2.9E+02 0.01 23.9 8.8 46 576-621 45-90 (96)
402 2ius_A DNA translocase FTSK; n 28.5 14 0.00048 42.6 0.6 17 82-98 168-184 (512)
403 1zd8_A GTP:AMP phosphotransfer 28.4 15 0.00052 37.0 0.8 16 83-98 9-24 (227)
404 3hr8_A Protein RECA; alpha and 28.4 20 0.00067 39.4 1.7 32 67-98 43-78 (356)
405 2p6r_A Afuhel308 helicase; pro 28.4 12 0.0004 45.1 -0.2 24 73-98 34-57 (702)
406 1ik9_A DNA repair protein XRCC 28.4 2.2E+02 0.0076 28.5 9.3 9 546-554 164-172 (213)
407 3a4m_A L-seryl-tRNA(SEC) kinas 28.3 17 0.00057 37.8 1.0 17 82-98 5-21 (260)
408 2eyq_A TRCF, transcription-rep 28.3 21 0.00072 45.6 2.2 26 73-98 616-641 (1151)
409 3aez_A Pantothenate kinase; tr 28.3 15 0.00053 39.4 0.8 17 82-98 91-107 (312)
410 2v9p_A Replication protein E1; 28.2 15 0.00052 39.3 0.7 28 71-98 114-143 (305)
411 1ukz_A Uridylate kinase; trans 28.1 16 0.00055 35.9 0.9 16 83-98 17-32 (203)
412 1qf9_A UMP/CMP kinase, protein 28.0 16 0.00054 35.3 0.8 16 83-98 8-23 (194)
413 3m48_A General control protein 28.0 52 0.0018 22.6 3.0 20 538-557 3-22 (33)
414 1jjv_A Dephospho-COA kinase; P 28.0 16 0.00054 36.1 0.8 16 83-98 4-19 (206)
415 2bni_A General control protein 27.9 56 0.0019 22.5 3.1 29 535-563 1-29 (34)
416 1aky_A Adenylate kinase; ATP:A 27.8 16 0.00056 36.5 0.9 16 83-98 6-21 (220)
417 3kl4_A SRP54, signal recogniti 27.8 18 0.0006 40.9 1.2 17 82-98 98-114 (433)
418 3a8t_A Adenylate isopentenyltr 27.7 18 0.00061 39.4 1.2 16 83-98 42-57 (339)
419 3fb4_A Adenylate kinase; psych 27.7 16 0.00056 36.2 0.9 15 84-98 3-17 (216)
420 1c9k_A COBU, adenosylcobinamid 27.6 17 0.00058 35.7 0.9 14 84-97 2-15 (180)
421 3u4q_A ATP-dependent helicase/ 27.6 24 0.00081 45.5 2.5 19 80-98 22-40 (1232)
422 3s9g_A Protein hexim1; cyclin 27.6 3E+02 0.01 23.8 9.4 55 498-557 33-87 (104)
423 3exa_A TRNA delta(2)-isopenten 27.6 17 0.00058 39.2 0.9 16 83-98 5-20 (322)
424 2c95_A Adenylate kinase 1; tra 27.5 17 0.00059 35.3 0.9 17 82-98 10-26 (196)
425 2pcj_A ABC transporter, lipopr 27.5 16 0.00055 37.1 0.7 15 84-98 33-47 (224)
426 3qf7_A RAD50; ABC-ATPase, ATPa 27.4 17 0.00059 39.9 1.0 15 84-98 26-40 (365)
427 2vhj_A Ntpase P4, P4; non- hyd 27.2 19 0.00065 38.9 1.3 17 82-98 124-140 (331)
428 4gkp_A Spindle POLE BODY-assoc 27.2 1.1E+02 0.0037 31.9 6.9 88 45-152 45-134 (275)
429 2yvu_A Probable adenylyl-sulfa 27.2 20 0.00067 34.8 1.3 17 82-98 14-30 (186)
430 1tq4_A IIGP1, interferon-induc 27.1 14 0.00047 41.5 0.2 16 83-98 71-86 (413)
431 2va8_A SSO2462, SKI2-type heli 27.1 20 0.00069 43.1 1.7 17 82-98 47-63 (715)
432 1ex7_A Guanylate kinase; subst 27.1 16 0.00054 36.1 0.6 15 84-98 4-18 (186)
433 3efg_A Protein SLYX homolog; x 27.0 1.5E+02 0.0051 24.7 6.4 26 535-560 35-60 (78)
434 1ic2_A Tropomyosin alpha chain 26.8 2.7E+02 0.0093 23.1 10.7 47 860-906 20-66 (81)
435 3bs4_A Uncharacterized protein 26.8 49 0.0017 34.4 4.3 28 70-98 7-37 (260)
436 2ged_A SR-beta, signal recogni 26.8 17 0.00058 35.1 0.7 19 80-98 47-65 (193)
437 1wt6_A Myotonin-protein kinase 26.8 2.8E+02 0.0096 23.2 8.4 31 531-561 41-71 (81)
438 2onk_A Molybdate/tungstate ABC 26.8 17 0.00058 37.4 0.7 16 83-98 26-41 (240)
439 3nmd_A CGMP dependent protein 26.6 2.2E+02 0.0075 23.3 7.1 7 837-843 17-23 (72)
440 2ce2_X GTPase HRAS; signaling 26.5 16 0.00055 33.8 0.5 16 83-98 5-20 (166)
441 2cbz_A Multidrug resistance-as 26.5 17 0.00059 37.2 0.7 16 83-98 33-48 (237)
442 3jsv_C NF-kappa-B essential mo 26.4 3.1E+02 0.011 23.6 10.4 48 867-914 40-87 (94)
443 1sgw_A Putative ABC transporte 26.4 16 0.00056 36.8 0.6 15 84-98 38-52 (214)
444 3dl0_A Adenylate kinase; phosp 26.4 18 0.00062 36.0 0.9 15 84-98 3-17 (216)
445 1zu4_A FTSY; GTPase, signal re 26.3 17 0.00059 39.2 0.7 16 83-98 107-122 (320)
446 3gfo_A Cobalt import ATP-bindi 26.3 17 0.0006 38.2 0.7 15 84-98 37-51 (275)
447 1lkx_A Myosin IE heavy chain; 26.1 19 0.00066 43.1 1.2 21 78-98 91-111 (697)
448 2xau_A PRE-mRNA-splicing facto 25.9 18 0.00061 44.1 0.8 25 73-98 102-126 (773)
449 3o8b_A HCV NS3 protease/helica 25.8 23 0.00079 42.2 1.8 16 83-98 234-249 (666)
450 3c3g_A Alpha/beta peptide with 25.7 1.2E+02 0.0042 20.7 4.4 26 740-765 3-28 (33)
451 1g6h_A High-affinity branched- 25.7 18 0.00062 37.6 0.7 16 83-98 35-50 (257)
452 2v3c_C SRP54, signal recogniti 25.6 23 0.00079 39.9 1.7 17 82-98 100-116 (432)
453 1cke_A CK, MSSA, protein (cyti 25.6 21 0.00072 35.7 1.2 17 82-98 6-22 (227)
454 3qne_A Seryl-tRNA synthetase, 25.5 2.5E+02 0.0084 31.9 10.0 45 646-698 59-103 (485)
455 1ji0_A ABC transporter; ATP bi 25.5 18 0.00063 37.1 0.7 16 83-98 34-49 (240)
456 2zqm_A Prefoldin beta subunit 25.5 3.4E+02 0.012 23.7 12.0 27 535-561 20-46 (117)
457 1x8y_A Lamin A/C; structural p 25.4 3E+02 0.01 23.1 10.8 48 650-697 5-52 (86)
458 2if2_A Dephospho-COA kinase; a 25.4 19 0.00064 35.4 0.8 16 83-98 3-18 (204)
459 1b0u_A Histidine permease; ABC 25.3 19 0.00064 37.6 0.7 15 84-98 35-49 (262)
460 3dm5_A SRP54, signal recogniti 25.3 22 0.00074 40.2 1.3 18 81-98 100-117 (443)
461 2pbr_A DTMP kinase, thymidylat 25.2 20 0.00068 34.7 0.9 16 83-98 2-17 (195)
462 1nlf_A Regulatory protein REPA 25.2 19 0.00064 37.7 0.7 17 82-98 31-47 (279)
463 1ak2_A Adenylate kinase isoenz 25.2 23 0.00079 35.9 1.4 17 82-98 17-33 (233)
464 2jaq_A Deoxyguanosine kinase; 25.1 20 0.00069 35.0 0.9 16 83-98 2-17 (205)
465 4ddu_A Reverse gyrase; topoiso 25.0 27 0.00091 44.4 2.2 25 72-98 86-110 (1104)
466 1w9i_A Myosin II heavy chain; 24.9 21 0.00072 43.2 1.2 21 78-98 169-189 (770)
467 1zuh_A Shikimate kinase; alpha 24.9 21 0.00073 33.8 1.0 16 83-98 9-24 (168)
468 2ff7_A Alpha-hemolysin translo 24.8 19 0.00066 37.1 0.7 16 83-98 37-52 (247)
469 2ghi_A Transport protein; mult 24.7 19 0.00066 37.4 0.7 16 83-98 48-63 (260)
470 1np6_A Molybdopterin-guanine d 24.7 20 0.00068 34.9 0.8 16 83-98 8-23 (174)
471 2v66_B Nuclear distribution pr 24.7 3.7E+02 0.013 23.9 14.7 24 609-632 35-58 (111)
472 2yz2_A Putative ABC transporte 24.7 19 0.00066 37.6 0.7 16 83-98 35-50 (266)
473 1zak_A Adenylate kinase; ATP:A 24.6 20 0.00067 35.9 0.8 16 83-98 7-22 (222)
474 3fvq_A Fe(3+) IONS import ATP- 24.6 19 0.00064 39.5 0.6 15 84-98 33-47 (359)
475 1mv5_A LMRA, multidrug resista 24.6 20 0.00067 36.9 0.7 16 83-98 30-45 (243)
476 2gno_A DNA polymerase III, gam 24.6 23 0.00079 37.8 1.4 30 69-98 6-35 (305)
477 2dyk_A GTP-binding protein; GT 24.5 19 0.00065 33.3 0.6 16 83-98 3-18 (161)
478 2plr_A DTMP kinase, probable t 24.5 21 0.0007 35.1 0.9 17 82-98 5-21 (213)
479 1a5t_A Delta prime, HOLB; zinc 24.4 23 0.0008 38.1 1.4 28 71-98 13-41 (334)
480 2f9l_A RAB11B, member RAS onco 24.3 19 0.00065 35.2 0.6 18 81-98 5-22 (199)
481 3f9v_A Minichromosome maintena 24.3 17 0.00059 42.8 0.3 16 83-98 329-344 (595)
482 2olj_A Amino acid ABC transpor 24.1 20 0.00069 37.4 0.7 16 83-98 52-67 (263)
483 4g1u_C Hemin import ATP-bindin 24.1 21 0.0007 37.4 0.8 15 84-98 40-54 (266)
484 2cxx_A Probable GTP-binding pr 24.1 29 0.00099 33.1 1.9 16 83-98 3-18 (190)
485 2qt1_A Nicotinamide riboside k 24.1 20 0.00068 35.4 0.6 16 83-98 23-38 (207)
486 2v26_A Myosin VI; calmodulin-b 24.0 22 0.00076 43.2 1.2 21 78-98 137-157 (784)
487 1vpl_A ABC transporter, ATP-bi 24.0 20 0.0007 37.2 0.7 16 83-98 43-58 (256)
488 2pez_A Bifunctional 3'-phospho 23.9 22 0.00076 34.1 1.0 16 83-98 7-22 (179)
489 1f6b_A SAR1; gtpases, N-termin 23.9 28 0.00095 34.0 1.7 28 71-98 14-42 (198)
490 1tf7_A KAIC; homohexamer, hexa 23.9 26 0.00089 40.5 1.7 29 70-98 25-56 (525)
491 1j8m_F SRP54, signal recogniti 23.8 29 0.00099 36.9 1.9 16 83-98 100-115 (297)
492 2yyz_A Sugar ABC transporter, 23.8 21 0.0007 39.3 0.7 15 84-98 32-46 (359)
493 2pze_A Cystic fibrosis transme 23.7 21 0.00071 36.4 0.7 15 84-98 37-51 (229)
494 3d3q_A TRNA delta(2)-isopenten 23.7 23 0.00077 38.6 1.0 16 83-98 9-24 (340)
495 3rlf_A Maltose/maltodextrin im 23.7 21 0.00071 39.6 0.7 15 84-98 32-46 (381)
496 1g8x_A Myosin II heavy chain f 23.7 22 0.00076 44.5 1.1 21 78-98 169-189 (1010)
497 1deq_A Fibrinogen (alpha chain 23.7 7.3E+02 0.025 26.9 14.1 55 632-697 104-158 (390)
498 3tqc_A Pantothenate kinase; bi 23.7 24 0.00083 38.0 1.3 16 83-98 94-109 (321)
499 2eqb_B RAB guanine nucleotide 23.6 3.6E+02 0.012 23.4 13.9 23 602-624 40-62 (97)
500 1e4v_A Adenylate kinase; trans 23.6 21 0.00073 35.5 0.8 13 84-96 3-15 (214)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.5e-91 Score=781.73 Aligned_cols=348 Identities=38% Similarity=0.630 Sum_probs=297.0
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEeCC--CcceeecceeEEeceEecCCCCCccccccccchhhHHhhhcCCCee
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHG--NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~~v~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~t 83 (946)
..++|+|+|||||+++.|...++..|+.+.++ ...+.++.+.|+||+||++++ +|++||+.++.|+|+++|+|||+|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~plv~~~l~G~n~t 87 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNA-SQEKVYNEAAKSIVTDVLAGYNGT 87 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTC-CHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEECCEEEeCceEecCCC-CHHHHHHHhhhhHHHHHhCCCceE
Confidence 45799999999999999988888888877654 566778889999999999865 599999999999999999999999
Q ss_pred EEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCC
Q 002261 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (946)
|||||||||||||||+|+.+++..+|||||++++||..+........|.|+|||+|||||+|+|||++.
T Consensus 88 ifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~----------- 156 (365)
T 2y65_A 88 IFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS----------- 156 (365)
T ss_dssp EEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT-----------
T ss_pred EEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCC-----------
Confidence 999999999999999998877788999999999999999887778899999999999999999999863
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002261 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (946)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~ 243 (946)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....
T Consensus 157 --------~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~--- 225 (365)
T 2y65_A 157 --------KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE--- 225 (365)
T ss_dssp --------CCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT---
T ss_pred --------cCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC---
Confidence 246899999999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcc
Q 002261 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (946)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkL 323 (946)
......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||
T Consensus 226 -----------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~----~~hvPyRdSkL 290 (365)
T 2y65_A 226 -----------NQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN----KTHIPYRDSKL 290 (365)
T ss_dssp -----------TCCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCC----CSCCCGGGCHH
T ss_pred -----------CCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCccccCHH
Confidence 134678999999999999999999999999999999999999999999999864 25999999999
Q ss_pred hhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH-HHHHHHHHHH
Q 002261 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM-QKLRQQLKYL 391 (946)
Q Consensus 324 TrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei-~~Lr~ei~~L 391 (946)
||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++...++ .+++.++..+
T Consensus 291 T~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~ 359 (365)
T 2y65_A 291 TRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359 (365)
T ss_dssp HHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC--------
T ss_pred HHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876544 3355444433
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=5.4e-91 Score=776.96 Aligned_cols=345 Identities=44% Similarity=0.677 Sum_probs=292.9
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec---------ceeEEeceEecCCCCCccccccccchhhHHh
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---------~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~ 75 (946)
...++|+|+|||||++..|...++..|+.+.+....+.+. .+.|+||+||++++ +|++||+.++.|+|++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~-~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA-KQFELYDETFRPLVDS 96 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTC-CHHHHHHHTHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcC-chHHHHHHHHHHHHHH
Confidence 4467999999999999999988998899887766665542 36899999999865 5999999999999999
Q ss_pred hhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 155 (946)
+|+|||+||||||||||||||||+|..+++..+|||||++++||..+.. .....|.|+|||+|||||+|+|||++..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 173 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQ-- 173 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCT--
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCCCC--
Confidence 9999999999999999999999999877777899999999999999987 4577899999999999999999998643
Q ss_pred cccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEE
Q 002261 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (946)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~ 235 (946)
...+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+
T Consensus 174 ----------------~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~ 237 (372)
T 3b6u_A 174 ----------------TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE 237 (372)
T ss_dssp ----------------TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEE
T ss_pred ----------------CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCc
Q 002261 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (946)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ 315 (946)
+..... +.......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++ ..|
T Consensus 238 ~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~----~~h 302 (372)
T 3b6u_A 238 CSEVGL-----------DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK----STH 302 (372)
T ss_dssp EEC----------------CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC-------C
T ss_pred EeecCC-----------CCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCC----CCC
Confidence 754211 11245678999999999999999999999999999999999999999999999764 259
Q ss_pred ccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHH
Q 002261 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKL 384 (946)
Q Consensus 316 ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~L 384 (946)
||||||||||||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++....+.+|
T Consensus 303 vPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~~ 371 (372)
T 3b6u_A 303 IPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371 (372)
T ss_dssp CCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----------
T ss_pred CcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999877666554
No 3
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.7e-90 Score=765.54 Aligned_cols=331 Identities=42% Similarity=0.648 Sum_probs=276.8
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee--------------cceeEEeceEecCCCCCccccccccchhh
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------------GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~--------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~l 72 (946)
.++|+|+|||||++..|...++..|+.+.+....+.+ ..+.|+||+||++++ +|++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS-CNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTC-CHHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCc-chhHHHHHHHHHH
Confidence 3699999999999999998898888888766555543 236899999999865 5999999999999
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 152 (946)
|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..+........|.|+|||+|||||+|+|||++.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 158 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGN---KEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecC---CccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC
Confidence 99999999999999999999999999985 356999999999999999876677899999999999999999999742
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002261 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (946)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i 232 (946)
.++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 159 --------------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 218 (350)
T 2vvg_A 159 --------------------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMV 218 (350)
T ss_dssp --------------------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEE
T ss_pred --------------------cCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEE
Confidence 358899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 002261 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (946)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~ 312 (946)
+|++..... .......|+|+|||||||||.+++++.|.|++||.+||+||++||+||.+|++++
T Consensus 219 ~v~~~~~~~------------~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~---- 282 (350)
T 2vvg_A 219 RIECSEVIE------------NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA---- 282 (350)
T ss_dssp EEEEEEC----------------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC----
T ss_pred EEEEeeccC------------CCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC----
Confidence 999864321 1234678999999999999999999999999999999999999999999999864
Q ss_pred CCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccch
Q 002261 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLIS 378 (946)
Q Consensus 313 ~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~ 378 (946)
.|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++..
T Consensus 283 -~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 283 -THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp -SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred -CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 49999999999999999999999999999999999999999999999999999999999998765
No 4
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=7.5e-90 Score=766.29 Aligned_cols=338 Identities=41% Similarity=0.619 Sum_probs=306.7
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee----cceeEEeceEecCCCCCccccccccchhhHHhhhcCC
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~----~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~ 80 (946)
+..++|+|+|||||++..|...++..||.+.+... +.+ ..+.|+||+||++++ +|++||+.++.|+|+++|+||
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~plv~~~l~G~ 80 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDT-CTVDSKEAQGSFTFDRVFDMSC-KQSDIFDFSIKPTVDDILNGY 80 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTE-EEECSTTCCEEEECSEEECTTC-CHHHHHHHHTHHHHHHHTTTC
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCe-EEEccCCCccEEeeCeEECCCC-ccHHHHHHHHHHHHHHHhCCC
Confidence 34689999999999999999888888888766543 222 247899999999765 599999999999999999999
Q ss_pred CeeEEEeccCCCCccccccCCCC-CCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccc
Q 002261 81 NATVLAYGQTGSGKTYTMGTGLR-EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~-~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 159 (946)
|+||||||||||||||||+|+.. +...+|||||++++||..|........|.|+|||+|||||+|+|||+|..
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~------ 154 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN------ 154 (355)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC------
T ss_pred cceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc------
Confidence 99999999999999999998543 45678999999999999998877778999999999999999999998632
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002261 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (946)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~ 239 (946)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+...
T Consensus 155 -------------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 221 (355)
T 1goj_A 155 -------------DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNV 221 (355)
T ss_dssp -------------CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEET
T ss_pred -------------CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEecc
Confidence 4688999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 002261 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (946)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyR 319 (946)
. ......|+|+|||||||||++++++.|.+++|+.+||+||++||+||.+|++++ ..|||||
T Consensus 222 ~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~----~~hvPyR 283 (355)
T 1goj_A 222 E--------------TGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK----SSHVPYR 283 (355)
T ss_dssp T--------------TTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS----CSCCCGG
T ss_pred C--------------CCceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCC----CCCCCCc
Confidence 2 134678999999999999999999999999999999999999999999999864 3599999
Q ss_pred CCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH
Q 002261 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM 381 (946)
Q Consensus 320 dSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei 381 (946)
||||||||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++...++
T Consensus 284 dSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~l 345 (355)
T 1goj_A 284 DSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345 (355)
T ss_dssp GCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSSS
T ss_pred cCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765443
No 5
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.4e-89 Score=764.03 Aligned_cols=346 Identities=36% Similarity=0.573 Sum_probs=306.2
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-----cceeEEeceEecCCCCCccccccccchhhHHhhhcCCC
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN 81 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-----~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n 81 (946)
.++|+|+|||||++..|...++..++.. .+...+.. ..+.|+||+||++.+ +|++||+. +.|+|+++|+|||
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNA-TQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTC-CHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCCCCCceEEecCEEECCCC-Ccceehhh-hhhhhHhhhcCCc
Confidence 3799999999999999977665433322 23323322 237899999999865 59999999 7999999999999
Q ss_pred eeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccC
Q 002261 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTAN 161 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~ 161 (946)
+||||||||||||||||+|+ ...+|||||++.+||..+........|.|+|||+|||||.|+|||+|...
T Consensus 81 ~tifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------- 150 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGA---DSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA------- 150 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS-------
T ss_pred eEEEEECCCCCCCeEeecCC---CCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc-------
Confidence 99999999999999999985 45699999999999999988766789999999999999999999987531
Q ss_pred CCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccc
Q 002261 162 GHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLH 241 (946)
Q Consensus 162 ~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~ 241 (946)
....+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....
T Consensus 151 ---------~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~- 220 (369)
T 3cob_A 151 ---------KRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ- 220 (369)
T ss_dssp ---------CCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-
T ss_pred ---------CCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-
Confidence 2457999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred cCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCC
Q 002261 242 SVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (946)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdS 321 (946)
......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++. .|||||||
T Consensus 221 -------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdS 282 (369)
T 3cob_A 221 -------------TQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-----QHIPYRNH 282 (369)
T ss_dssp -------------TCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-----SCCCGGGC
T ss_pred -------------CCcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-----CcCCCcCC
Confidence 245678999999999999999999999999999999999999999999999764 49999999
Q ss_pred cchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHH
Q 002261 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAEL 395 (946)
Q Consensus 322 kLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr~ei~~Lk~eL 395 (946)
||||||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|.+|.++ .++.+|+.++..++.++
T Consensus 283 kLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 283 KLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp HHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHHHHTTCC----
T ss_pred HHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999986 67788888777777665
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-89 Score=768.32 Aligned_cols=342 Identities=35% Similarity=0.564 Sum_probs=252.0
Q ss_pred CCCCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcc-ee-----ecceeEEeceEecCCCCCccccccccchhhHHhh
Q 002261 3 TASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQ-VQ-----IGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (946)
Q Consensus 3 ~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~-v~-----~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~ 76 (946)
+.+..++|+|+|||||++..|...++..|+.+.++... +. ...+.|+||+||++.+ +|++||+.++.|+|+++
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~-tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERS-TQQDIYAGSVQPILRHL 94 (388)
T ss_dssp SSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTC-CHHHHHHHHTGGGHHHH
T ss_pred ccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCC-CHhHHHHHHHHHHHHHh
Confidence 34567899999999999999987777778765433221 11 1236899999999765 59999999999999999
Q ss_pred hcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhc---cccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL---RHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~---~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
|+|||+||||||||||||||||+|+ ...+|||||++.+||..+... .....|.|+|||+|||||.|+|||+|..
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~---~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~ 171 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGS---PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS 171 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS
T ss_pred hcCceeeEeeecCCCCCCCeEeecC---ccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC
Confidence 9999999999999999999999985 456999999999999999763 2356899999999999999999998642
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002261 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (946)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (946)
.++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+
T Consensus 172 -------------------~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~ 232 (388)
T 3bfn_A 172 -------------------GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVK 232 (388)
T ss_dssp -------------------CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEE
T ss_pred -------------------CCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEE
Confidence 3588999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 002261 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (946)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~ 313 (946)
|.+..... ......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++.
T Consensus 233 v~~~~~~~-------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~----- 294 (388)
T 3bfn_A 233 VDQRERLA-------------PFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL----- 294 (388)
T ss_dssp EEEEESST-------------TCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-----
T ss_pred EEEeccCC-------------CCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-----
Confidence 99865321 134578999999999999999999999999999999999999999999998764
Q ss_pred CcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHH
Q 002261 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLR 385 (946)
Q Consensus 314 ~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~~ei~~Lr 385 (946)
.|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++....+..++
T Consensus 295 ~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k 366 (388)
T 3bfn_A 295 PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVK 366 (388)
T ss_dssp SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC------------------
T ss_pred CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHHHHH
Confidence 399999999999999999999999999999999999999999999999999999999999988776554333
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.5e-89 Score=757.08 Aligned_cols=337 Identities=42% Similarity=0.633 Sum_probs=290.1
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee--cceeEEeceEecCCCCCccccccccchhhHHhhhcCCCee
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~--~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~t 83 (946)
+.++|+|+|||||++..|...+...++.+......+.. +.+.|+||+||++++ +|++||+.++.|+|+++|+|||+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~-tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNE-TTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTS-CHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCC-CHHHHHHHHHHHHHHHHHcCCccc
Confidence 46899999999999999987777666655444433332 458999999999865 499999999999999999999999
Q ss_pred EEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCC
Q 002261 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (946)
|||||||||||||||+|+ ...+|||||++++||..+... ....|.|+|||+|||||+|+|||++..
T Consensus 81 ifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~---------- 146 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQ---------- 146 (349)
T ss_dssp EEEEESTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSC----------
T ss_pred eeeecCCCCCCCeEEecC---CCCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCC----------
Confidence 999999999999999985 456999999999999999874 467899999999999999999998643
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002261 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (946)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~ 243 (946)
...++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++......
T Consensus 147 -------~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~- 218 (349)
T 1t5c_A 147 -------KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEP- 218 (349)
T ss_dssp -------TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC---
T ss_pred -------CCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCC-
Confidence 235799999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcc
Q 002261 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (946)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkL 323 (946)
.........|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++++. ..|||||||||
T Consensus 219 --------~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~---~~hvPyRdSkL 287 (349)
T 1t5c_A 219 --------SNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV---GGFINYRDSKL 287 (349)
T ss_dssp -------------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC---TTSSCGGGSHH
T ss_pred --------cCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCC---CCCCcccccHH
Confidence 1112456789999999999999999999999999999999999999999999998753 35999999999
Q ss_pred hhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccch
Q 002261 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLIS 378 (946)
Q Consensus 324 TrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~~~ 378 (946)
||||||+|||||+|+|||||||+ +++||++||+||+||++|+|+|++|.++..
T Consensus 288 T~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 288 TRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 99999999999999999999997 489999999999999999999999998654
No 8
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.8e-89 Score=751.36 Aligned_cols=321 Identities=40% Similarity=0.666 Sum_probs=298.1
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeecceeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEE
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ 85 (946)
..++|+|+|||||+++.|...++..|+.+.+ ...+.++++.|+||+||++++ +|++||+.++.|+|+++|+|||+|||
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~~~~~f~FD~Vf~~~~-sQ~~Vy~~~~~plv~~~l~G~n~tif 82 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQG-EDTVVIASKPYAFDRVFQSST-SQEQVYNDCAKKIVKDVLEGYNGTIF 82 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEET-TTEEEETTEEEECSEEECTTC-CHHHHHHHHTHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECC-CCeEEECCEEEECCeEeCCCC-CHHHHHHHHhhhhHHHHhCCCeEEEE
Confidence 4689999999999999999888887777654 456777889999999999865 59999999999999999999999999
Q ss_pred EeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccccccccCCCCC
Q 002261 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAG 165 (946)
Q Consensus 86 ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~ 165 (946)
|||||||||||||+|+..++..+|||||++++||..|........|.|+|||+|||||+|+|||++.
T Consensus 83 AYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~------------- 149 (325)
T 1bg2_A 83 AYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS------------- 149 (325)
T ss_dssp EECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT-------------
T ss_pred EECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC-------------
Confidence 9999999999999998777778899999999999999887778899999999999999999999863
Q ss_pred ccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCC
Q 002261 166 KVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSP 245 (946)
Q Consensus 166 ~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~~~~~~ 245 (946)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....
T Consensus 150 ------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----- 218 (325)
T 1bg2_A 150 ------KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----- 218 (325)
T ss_dssp ------CCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-----
T ss_pred ------CCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC-----
Confidence 246899999999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcchh
Q 002261 246 DNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTR 325 (946)
Q Consensus 246 ~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLTr 325 (946)
......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||
T Consensus 219 ---------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRdSkLT~ 284 (325)
T 1bg2_A 219 ---------TEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMTR 284 (325)
T ss_dssp ---------TCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHH
T ss_pred ---------CCcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-----CCCcccccHHHH
Confidence 235678999999999999999999999999999999999999999999999863 499999999999
Q ss_pred hhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 326 LLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 326 lLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 285 lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 285 ILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999987
No 9
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=7e-88 Score=769.26 Aligned_cols=346 Identities=41% Similarity=0.613 Sum_probs=278.6
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEeCCCccee--------------------ecceeEEeceEecCC------CC
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ--------------------IGTHSFTFDHVYGNG------GS 59 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~--------------------~~~~~f~FD~Vf~~~------~s 59 (946)
..++|+|+|||||+++.|...++..++.+.+....+. ...+.|+||+||++. .+
T Consensus 36 ~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~a 115 (443)
T 2owm_A 36 PGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA 115 (443)
T ss_dssp CCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCC
T ss_pred CCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCC
Confidence 3469999999999999998888776666654432221 124789999999864 24
Q ss_pred CccccccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc---ccceEEEEee
Q 002261 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR---HQMEFQLHVS 136 (946)
Q Consensus 60 ~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~---~~~~~~v~vS 136 (946)
+|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..|.... ....|.|+||
T Consensus 116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~---~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT---PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC---TTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred CHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecC---CCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEE
Confidence 689999999999999999999999999999999999999885 3568999999999999998752 3678999999
Q ss_pred hhhhhhHHHHHhhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhccccccccc
Q 002261 137 FIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGS 216 (946)
Q Consensus 137 ~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~ 216 (946)
|+|||||.|+|||+|.... .....+.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++
T Consensus 193 ~lEIYnE~i~DLL~~~~~~--------------~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~ 258 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPN--------------KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVAS 258 (443)
T ss_dssp EEEEETTEEEETTSCCCSS--------------CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCS
T ss_pred EEEEECCEeeEccCccccC--------------CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCccc
Confidence 9999999999999874311 12346999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHH
Q 002261 217 TNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLA 296 (946)
Q Consensus 217 t~~n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~ 296 (946)
|.||..|||||+||+|+|.+..... .........|+|+|||||||||++++++.|.|++||.+||+||++
T Consensus 259 T~~N~~SSRSH~Ifti~v~~~~~~~----------~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~a 328 (443)
T 2owm_A 259 TKMNDTSSRSHAVFTIMLKQIHHDL----------ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTT 328 (443)
T ss_dssp SSSSCBCTTEEEEEEEEEEEEC-----------------CCEEEEEEEEEECCCCCC--------------CCSSHHHHH
T ss_pred CcCCCccCCCeEEEEEEEEEeeccc----------CCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHH
Confidence 9999999999999999999864311 011234578999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccC-----------------CCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHH
Q 002261 297 LGNVISALGDEKKR-----------------REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKY 359 (946)
Q Consensus 297 L~~vi~~L~~~~~~-----------------~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~f 359 (946)
||+||.+|+++... +...|||||||||||||||+|||||+|+|||||||+ +++||++||+|
T Consensus 329 Lg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrf 406 (443)
T 2owm_A 329 LGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRY 406 (443)
T ss_dssp HHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHH
Confidence 99999999976532 123599999999999999999999999999999997 49999999999
Q ss_pred HHHhhcccCcccccc-ccchHH
Q 002261 360 ANRARNIQNKPVVNR-DLISSD 380 (946)
Q Consensus 360 a~ra~~Iknkp~vN~-d~~~~e 380 (946)
|+||++|+|+|++|. |+....
T Consensus 407 A~rak~I~n~~~vN~~d~~~~~ 428 (443)
T 2owm_A 407 ADQAKRIRTRAVVNQVDGVSAA 428 (443)
T ss_dssp HHHHTTCEECCCCCCC------
T ss_pred HHHHhhccccceecccCCccHH
Confidence 999999999999998 655433
No 10
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1e-88 Score=759.20 Aligned_cols=335 Identities=40% Similarity=0.626 Sum_probs=280.5
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------cceeEEeceEecCCCCCccccccccchhhHHh
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~ 75 (946)
...++|+|+|||||++..|...++..|+.+.+....+.+ ..+.|+||+||++.+ +|++||+.++.|+|++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST-KQIDVYRSVVCPILDE 83 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccC-chhHHHHHHHHHhHHH
Confidence 346799999999999999998888888888776655543 237899999999865 5999999999999999
Q ss_pred hhcCCCeeEEEeccCCCCccccccCCCCC--------CCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHH
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD 147 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~--------~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~D 147 (946)
+|+|||+||||||||||||||||+|+... ...+|||||++++||..+.. ....|.|+|||+|||||+|+|
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEE
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeee
Confidence 99999999999999999999999997542 12479999999999999875 467899999999999999999
Q ss_pred hhcCcccccccccCCCCCccccCCCCCceEEecCC--CcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCC
Q 002261 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSN--GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSR 225 (946)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~--~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSR 225 (946)
||+|... ....+.+++++. ++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||
T Consensus 162 LL~~~~~----------------~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 225 (359)
T 1x88_A 162 LLNPSSD----------------VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 225 (359)
T ss_dssp TTCTTSC----------------TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hhccccc----------------ccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCC
Confidence 9987541 124689999984 7899999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhh
Q 002261 226 SHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (946)
Q Consensus 226 SH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~ 305 (946)
||+||+|+|.+..... +.......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+
T Consensus 226 SH~if~i~i~~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~ 294 (359)
T 1x88_A 226 SHSVFSVTIHMKETTI-----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 294 (359)
T ss_dssp CEEEEEEEEEEEEECT-----------TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEEEecccC-----------CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999998764311 11234578999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 002261 306 DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (946)
Q Consensus 306 ~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~ 374 (946)
++. .|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.
T Consensus 295 ~~~-----~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 295 ERT-----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp TTC-----SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred cCC-----CCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 753 4999999999999999999999999999999999999999999999999999999999996
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=5.4e-88 Score=755.32 Aligned_cols=338 Identities=40% Similarity=0.617 Sum_probs=280.5
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee------cceeEEeceEecCCC-------CCccccccccchhhHH
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI------GTHSFTFDHVYGNGG-------SPSSAMFGECVAPLVD 74 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~------~~~~f~FD~Vf~~~~-------s~q~~v~~~~~~~lv~ 74 (946)
++|+|+|||||++..|...++..++.+.+....+.. ..+.|+||+||++.. ++|++||+.++.|+|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~ 83 (366)
T 2zfi_A 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83 (366)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHH
T ss_pred CCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHH
Confidence 589999999999999988887777766654332221 247899999998751 4589999999999999
Q ss_pred hhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 75 ~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
++|+|||+||||||||||||||||+|+.. ...+|||||++++||..|.... ....|.|+|||+|||||+|+|||+|..
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHhcCCeeEEEEeCCCCCCCceEeeCCCc-cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999998642 3568999999999999998753 357899999999999999999998743
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002261 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (946)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (946)
...+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+
T Consensus 163 ------------------~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 224 (366)
T 2zfi_A 163 ------------------KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNII 224 (366)
T ss_dssp ------------------CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEE
T ss_pred ------------------CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEE
Confidence 24689999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhcc----
Q 002261 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK---- 309 (946)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~---- 309 (946)
|.+...... ........|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|+++..
T Consensus 225 v~~~~~~~~----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~ 294 (366)
T 2zfi_A 225 FTQKRHDAE----------TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294 (366)
T ss_dssp EEEEEECTT----------TTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred EEEecccCC----------CCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhccccccc
Confidence 998653211 111345689999999999999999999999999999999999999999999998531
Q ss_pred ---CCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 002261 310 ---RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (946)
Q Consensus 310 ---~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~ 374 (946)
.++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|.++.
T Consensus 295 ~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp ---------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred ccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 12357999999999999999999999999999999999999999999999999999999999875
No 12
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=9e-88 Score=749.26 Aligned_cols=333 Identities=48% Similarity=0.785 Sum_probs=275.4
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceeec-ceeEEeceEecCCCCCccccccccchhhHHhhhcCCCee
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~-~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~t 83 (946)
.+.++|+|+|||||+++.|...++..|+.+.++.+.+.++ .+.|+||+||++++ +|++||+.++.|+|+++|+|||+|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~vy~~~~~plv~~~l~G~n~t 86 (344)
T 4a14_A 8 AEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDA-GQEAVYQACVQPLLEAFFEGFNAT 86 (344)
T ss_dssp -CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTC-CHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred ccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCc-chhHHHHHHHHHHHHHHHhhcCee
Confidence 3578999999999999999999999999999988887775 58999999999865 599999999999999999999999
Q ss_pred EEEeccCCCCccccccCCCCC---CCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCccccccccc
Q 002261 84 VLAYGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm~g~~~~---~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 160 (946)
|||||||||||||||+|+... ...+|||||++++||..+... ....|.|+|||+|||||+|+|||++..
T Consensus 87 ifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~------- 158 (344)
T 4a14_A 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGT------- 158 (344)
T ss_dssp EEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCC-------
T ss_pred EEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhcc-------
Confidence 999999999999999886432 467899999999999999874 567899999999999999999998643
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002261 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (946)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~ 240 (946)
...++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++....
T Consensus 159 ----------~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~ 228 (344)
T 4a14_A 159 ----------ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRA 228 (344)
T ss_dssp ----------CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--
T ss_pred ----------ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCC
Confidence 2346899999999999999999999999999999999999999999999999999999999999987532
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 002261 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (946)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRd 320 (946)
.. ....+.......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++++ ...||||||
T Consensus 229 ~~------~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~--~~~hvPyRd 300 (344)
T 4a14_A 229 PS------RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR--RGSHIPYRD 300 (344)
T ss_dssp ----------------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTT--TTSCCCGGG
T ss_pred cc------cCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccc--cCCCCCcch
Confidence 21 0111223567889999999999999999999999999999999999999999999998653 356999999
Q ss_pred CcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002261 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (946)
Q Consensus 321 SkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~ 364 (946)
|||||||||+|||||+|+|||||||+..+++||++||+||+|||
T Consensus 301 SkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 301 SKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp CHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999996
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-87 Score=753.30 Aligned_cols=333 Identities=42% Similarity=0.677 Sum_probs=277.9
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee------cceeEEeceEecCCCCCccccccccchhhHHhhhcCC
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~ 80 (946)
.++|+|+|||||++..|...++..|+.+......+.. ..+.|+||+||++++ +|++||+.++.|+|+++|+||
T Consensus 22 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~-~Q~~Vy~~~~~plv~~~l~G~ 100 (373)
T 2wbe_C 22 NQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPES-KQCDVYSVVVSPLIEEVLNGY 100 (373)
T ss_dssp CEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEecccc-chhHHHHHHHHHHHHHHhCCc
Confidence 4589999999999999988888888887655432221 247899999999865 599999999999999999999
Q ss_pred CeeEEEeccCCCCccccccCCCC--------CCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCc
Q 002261 81 NATVLAYGQTGSGKTYTMGTGLR--------EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~--------~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 152 (946)
|+||||||||||||||||+|+.. +...+|||||++++||..+... ...|.|+|||+|||||+|+|||++.
T Consensus 101 n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~~~ 178 (373)
T 2wbe_C 101 NCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLLSTD 178 (373)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESSCTT
T ss_pred eEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECCCCC
Confidence 99999999999999999999754 2357899999999999999763 5689999999999999999999864
Q ss_pred ccccccccCCCCCccccCCCCCceEEecC--CCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEE
Q 002261 153 SVSKSVTANGHAGKVSISGRPPIQIRESS--NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (946)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~--~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if 230 (946)
. ...+.+++++ .++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||
T Consensus 179 ~------------------~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if 240 (373)
T 2wbe_C 179 D------------------TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVF 240 (373)
T ss_dssp S------------------CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEE
T ss_pred C------------------CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEE
Confidence 3 2357788874 5789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCC-ccchhhhhhhhhhhHHHHHHHHHhhhhcc
Q 002261 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSD-GLRLKEGIHINRGLLALGNVISALGDEKK 309 (946)
Q Consensus 231 ~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~-g~r~~E~~~IN~sL~~L~~vi~~L~~~~~ 309 (946)
+|+|++.... .+.......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|+++.
T Consensus 241 ~i~v~~~~~~-----------~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~- 308 (373)
T 2wbe_C 241 SIVVHIRENG-----------IEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA- 308 (373)
T ss_dssp EEEEEECTTC-----------TTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-
T ss_pred EEEEEEecCC-----------CCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 9999875321 11123457899999999999999999987 9999999999999999999999999753
Q ss_pred CCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccccc
Q 002261 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDL 376 (946)
Q Consensus 310 ~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d~ 376 (946)
.|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.+.
T Consensus 309 ----~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 309 ----PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp ----SCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred ----CcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 499999999999999999999999999999999999999999999999999999999999864
No 14
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.2e-87 Score=746.11 Aligned_cols=323 Identities=41% Similarity=0.646 Sum_probs=260.3
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCc--------cee----------------ecceeEEeceEecCCCCCcc
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNP--------QVQ----------------IGTHSFTFDHVYGNGGSPSS 62 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~--------~v~----------------~~~~~f~FD~Vf~~~~s~q~ 62 (946)
.++|+|+|||||++.+|...|+..||.+..... .+. ...+.|+||+||++.+ +|+
T Consensus 9 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~-~Q~ 87 (355)
T 3lre_A 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETS-TQS 87 (355)
T ss_dssp ---CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTC-CHH
T ss_pred cCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCC-ChH
Confidence 579999999999999999999888887653321 111 1235799999998765 599
Q ss_pred ccccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhh
Q 002261 63 AMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK 142 (946)
Q Consensus 63 ~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~ 142 (946)
+||+.++.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++.+||..+........|.|.|||+||||
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYn 164 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYN 164 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccC---CCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEEC
Confidence 999999999999999999999999999999999999985 45689999999999999998777789999999999999
Q ss_pred HHHHHhhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCC
Q 002261 143 EEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQ 222 (946)
Q Consensus 143 e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 222 (946)
|.|+|||++. .++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..
T Consensus 165 E~i~DLL~~~--------------------~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~ 224 (355)
T 3lre_A 165 EQIRDLLVNS--------------------GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNAT 224 (355)
T ss_dssp TEEEESSSCC--------------------CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CB
T ss_pred CEEEECcCCC--------------------CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCC
Confidence 9999999752 36899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHH
Q 002261 223 SSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVIS 302 (946)
Q Consensus 223 SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~ 302 (946)
|||||+||+|+|.+..... ........|+|+|||||||||+.++++.|.|++||.+||+||++||+||.
T Consensus 225 SSRSH~if~i~v~~~~~~~-----------~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~ 293 (355)
T 3lre_A 225 SSRSHAVFQIYLRQQDKTA-----------SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVIN 293 (355)
T ss_dssp CTTCEEEEEEEEEEEETTS-----------CTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEEEecCCC-----------CCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875422 11234567999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 303 ALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 303 ~L~~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
+|+++++ +..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 294 aL~~~~~--~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 294 ALADSKR--KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHC----------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHhccC--CCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9998653 3469999999999999999999999999999999999999999999999999987
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-85 Score=725.18 Aligned_cols=321 Identities=36% Similarity=0.595 Sum_probs=274.8
Q ss_pred CCceEEEEEcCCCCCchhhcC-CceEEEEeCCCcc-eee----cceeEEeceEecCCCCCccccccccchhhHHhhhcCC
Q 002261 7 NCSVKVAVHVRPLIGDERAQG-CKECVAVTHGNPQ-VQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~-~~~~~~~~~~~~~-v~~----~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~ 80 (946)
.++|+|+|||||++..|...+ ...++.+.+.... +.+ ..+.|+||+||++++ +|++||+. +.|+|+++|+||
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~-v~~lv~~~l~G~ 80 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQA-SQQDVFQE-VQALVTSCIDGF 80 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTC-CHHHHHTT-THHHHHHHHTTC
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCC-CcHhHHHH-HHHHHHHHhCCC
Confidence 478999999999999886433 3445666554433 222 236899999999865 58999998 699999999999
Q ss_pred CeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCccccccccc
Q 002261 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 160 (946)
|+||||||||||||||||+|+ ..++|||||++++||..+........|.|+|||+|||||.|+|||++.+.
T Consensus 81 n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------ 151 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGT---AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ------ 151 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC------
T ss_pred EEEEEeECCCCCCCcEEEecC---CCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc------
Confidence 999999999999999999985 45699999999999999988767789999999999999999999986431
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002261 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (946)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~~ 240 (946)
....+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....
T Consensus 152 ----------~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 221 (330)
T 2h58_A 152 ----------EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS 221 (330)
T ss_dssp ----------CCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT
T ss_pred ----------ccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC
Confidence 1234566678899999999999999999999999999999999999999999999999999999986421
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 002261 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (946)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRd 320 (946)
......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+.+. .||||||
T Consensus 222 --------------~~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRd 282 (330)
T 2h58_A 222 --------------TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-----GHVPFRN 282 (330)
T ss_dssp --------------TTEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-----SCCCGGG
T ss_pred --------------CCcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-----CCCcccc
Confidence 235678999999999999999999999999999999999999999999998753 4999999
Q ss_pred CcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 002261 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (946)
Q Consensus 321 SkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Ik 367 (946)
|||||||||+|||||+|+|||||||+..+++||++||+||+||++|+
T Consensus 283 SkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 283 SKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp SHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999986
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.5e-85 Score=730.60 Aligned_cols=329 Identities=42% Similarity=0.608 Sum_probs=259.7
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCccee------------ecceeEEeceEecC-------CCCCcccccccc
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ------------IGTHSFTFDHVYGN-------GGSPSSAMFGEC 68 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~------------~~~~~f~FD~Vf~~-------~~s~q~~v~~~~ 68 (946)
.+|+|+|||||++.+|...++..++.+.+....+. ...+.|+||+||++ ..++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 37999999999999998877776666554332211 12478999999963 234589999999
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhc-cccceEEEEeehhhhhhHHHHH
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRD 147 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIy~e~v~D 147 (946)
+.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..+... .....|.|.|||+|||||.|+|
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 157 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGT---ADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD 157 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecC---CCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence 999999999999999999999999999999985 456899999999999999753 3457899999999999999999
Q ss_pred hhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcE
Q 002261 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (946)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH 227 (946)
||+|.. ...++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 158 LL~~~~-----------------~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH 220 (354)
T 3gbj_A 158 LLDPKG-----------------SRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSH 220 (354)
T ss_dssp TTC-----------------------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSE
T ss_pred ccCCCC-----------------CCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCccc
Confidence 998743 235789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhh
Q 002261 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307 (946)
Q Consensus 228 ~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~ 307 (946)
+||+|+|.+..... .........|+|+|||||||||+.++++.|.|++||.+||+||++||+||.+|++.
T Consensus 221 ~if~i~v~~~~~~~----------~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~ 290 (354)
T 3gbj_A 221 AVFKITLTHTLYDV----------KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQ 290 (354)
T ss_dssp EEEEEEEEEEEECT----------TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEeccc----------CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhh
Confidence 99999998764321 11123457899999999999999999999999999999999999999999999975
Q ss_pred ccC-CCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 308 KKR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 308 ~~~-~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
... ++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||.||+.-
T Consensus 291 ~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 291 SAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp ------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred hcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 421 23569999999999999999999999999999999999999999999999999853
No 17
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.5e-85 Score=730.29 Aligned_cols=323 Identities=33% Similarity=0.492 Sum_probs=274.5
Q ss_pred ceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-------------cceeEEeceEecCCCCCccccccccchhhHHh
Q 002261 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (946)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~ 75 (946)
+|+|+|||||++..|...++..||.+.++.. +.+ ..+.|+||+||++++ +|++||+.++.|+|++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~-i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~-~Q~~Vy~~~~~plv~~ 78 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCT-LYIDEPRYKVDMTKYIERHEFIVDKVFDDTV-DNFTVYENTIKPLIID 78 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTE-EEEEEEEEETTTEEEEEEEEEECSEEECTTC-CHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCE-EEEeCCccccccccccccceEEeeeEecCCC-CHHHHHHHHhhhhhhh
Confidence 5899999999999999888888887754432 211 236899999999765 5899999999999999
Q ss_pred hhc-CCCeeEEEeccCCCCccccccCCCC--CCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCc
Q 002261 76 LFQ-GYNATVLAYGQTGSGKTYTMGTGLR--EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (946)
Q Consensus 76 ~l~-G~n~ti~ayGqtgSGKT~Tm~g~~~--~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 152 (946)
+|+ ||||||||||||||||||||+|+.. ....+|||||++.+||..+........|.|+|||+|||||+|+|||++.
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 158 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR 158 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred hccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC
Confidence 996 9999999999999999999998643 3467999999999999999887677889999999999999999999753
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002261 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (946)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i 232 (946)
..+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 159 --------------------~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i 218 (360)
T 1ry6_A 159 --------------------KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNI 218 (360)
T ss_dssp ------------------------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEE
T ss_pred --------------------ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEE
Confidence 246678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCc-cchhhhhhhhhhhHHHHHHHHHhhhhccCC
Q 002261 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDG-LRLKEGIHINRGLLALGNVISALGDEKKRR 311 (946)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g-~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~ 311 (946)
+|.+.. .....|+|+|||||||||.+++++.| .+++||.+||+||++||+||.+|+.++
T Consensus 219 ~v~~~~-----------------~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~--- 278 (360)
T 1ry6_A 219 DLKDIN-----------------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK--- 278 (360)
T ss_dssp EEEETT-----------------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST---
T ss_pred EEEecc-----------------CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 998632 23567999999999999999999877 478999999999999999999998653
Q ss_pred CCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccc
Q 002261 312 EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (946)
Q Consensus 312 ~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~vN~d 375 (946)
.|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|.|+.|..
T Consensus 279 --~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 279 --NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp --TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----------
T ss_pred --CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 49999999999999999999999999999999999999999999999999999997766543
No 18
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=4.7e-85 Score=734.62 Aligned_cols=321 Identities=36% Similarity=0.543 Sum_probs=262.6
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-------------cceeEEeceEecCCCCCccccccccchh
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~ 71 (946)
.++++|+|+|||||++..|...++..||.+.+.. .+.+ ..+.|+||+||++++ +|++||+.++.|
T Consensus 68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~-~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-tQ~~Vy~~~~~p 145 (410)
T 1v8k_A 68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKC-LLLVHEPKLKVDLTKYLENQAFCFDFAFDETA-SNEVVYRFTARP 145 (410)
T ss_dssp TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSS-EEEEEEEEECTTCCEEEEEEEEECSEEECTTC-CHHHHHHHTTHH
T ss_pred CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCC-EEEEecCcccccccccccceEEeeeEEEecCC-ChhhhhHHHHHH
Confidence 3468999999999999999888888777764432 2221 236899999999865 599999999999
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccccCCCC---CCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHH
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---EGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRD 147 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~---~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~D 147 (946)
+|+++|+|||+||||||||||||||||+|++. ....+||||+++++||..+.... ....|.|+|||+|||||.|+|
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~D 225 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFD 225 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEE
Confidence 99999999999999999999999999999643 34578999999999999987532 357899999999999999999
Q ss_pred hhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcE
Q 002261 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (946)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH 227 (946)
||++. ..+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 226 LL~~~--------------------~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 285 (410)
T 1v8k_A 226 LLNKK--------------------AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSH 285 (410)
T ss_dssp TTTTT--------------------EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSE
T ss_pred CCCCC--------------------CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCce
Confidence 99752 3589999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCccchhhhhhhhhhhHHHHHHHHHhhh
Q 002261 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGD 306 (946)
Q Consensus 228 ~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~-~~g~r~~E~~~IN~sL~~L~~vi~~L~~ 306 (946)
+||+|+|.+. ....|+|+|||||||||..+++ +.|.+++||.+||+||++||+||.+|+.
T Consensus 286 ~Ifti~v~~~-------------------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 346 (410)
T 1v8k_A 286 ACFQILLRTK-------------------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 346 (410)
T ss_dssp EEEEEEEESS-------------------SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEEeC-------------------CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc
Confidence 9999999853 1357999999999999998876 5678899999999999999999999986
Q ss_pred hccCCCCCcccCCCCcchhhhhhc-cCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 002261 307 EKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (946)
Q Consensus 307 ~~~~~~~~~ipyRdSkLTrlLqds-LgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~ 371 (946)
+. .||||||||||+||||| |||||+|+|||||||+..+++||++||+||+||++|..+|-
T Consensus 347 ~~-----~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 347 NK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp -----------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CC-----CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 53 49999999999999999 69999999999999999999999999999999999998774
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.6e-84 Score=723.67 Aligned_cols=333 Identities=32% Similarity=0.487 Sum_probs=261.8
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCC---Ccceee-------cceeEEeceEecCCCCCccccccccchhhHHhh
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHG---NPQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~---~~~v~~-------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~ 76 (946)
.++|+|+|||||+.+.|...++..++.+... ...+.+ ..+.|+||+||++++ +|++||+. +.|+|+++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~vf~~-v~~lv~~~ 81 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSH-TNKEIFEE-IRQLVQSS 81 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTC-CHHHHHHH-HHHHHHGG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCc-cHHHHHHH-HHHHHHHH
Confidence 3799999999999999987766666543222 112222 136899999999865 58999997 67999999
Q ss_pred hcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccc-cceEEEEeehhhhhhHHHHHhhcCcccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 155 (946)
|+|||+||||||||||||||||+|+ .+|||||++++||..+..... .+.|.|.|||+|||||.|+|||++....
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~-----~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA-----GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSH 156 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST-----TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC-----CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccc
Confidence 9999999999999999999999884 369999999999999987543 5789999999999999999999875421
Q ss_pred cccccCCCCCccccCCCCCceEEecC-CCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002261 156 KSVTANGHAGKVSISGRPPIQIRESS-NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (946)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~-~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v 234 (946)
... ........+.|++++ .++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 157 ~~~--------~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 228 (349)
T 3t0q_A 157 DNI--------DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228 (349)
T ss_dssp ------------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEE
T ss_pred ccc--------ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEE
Confidence 100 001123567787765 56899999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002261 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (946)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (946)
.+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++.... ..
T Consensus 229 ~~~~~~--------------~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~--~~ 292 (349)
T 3t0q_A 229 NGRNLH--------------TGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAG--KR 292 (349)
T ss_dssp EEEETT--------------TCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGG--GS
T ss_pred EEEecC--------------CCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCC--CC
Confidence 986532 13457899999999999999999999999999999999999999999999876432 35
Q ss_pred cccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcc
Q 002261 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (946)
Q Consensus 315 ~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp 370 (946)
|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|+++|+..|
T Consensus 293 hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 293 YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp CCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred cCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999998764
No 20
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=7.7e-85 Score=728.85 Aligned_cols=319 Identities=35% Similarity=0.543 Sum_probs=256.8
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-------------cceeEEeceEecCCCCCccccccccchh
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~ 71 (946)
.++++|+|+|||||++..|...++..||.+.... .+.+ ..+.|+||+||++++ +|++||+.++.|
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-sQ~~Vy~~~~~p 125 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKC-LLLVHEPKLKVDLTKYLENQAFCFDFAFDETA-SNEVVYRFTARP 125 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSS-EEEEEEEEECTTCCEEEEEEEEECSEEECTTC-CHHHHHHHTTHH
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEECCCC-EEEEeCCCccccccccccccEEeeeEEEecCC-CceeehhhhHHH
Confidence 3478999999999999999888887777664332 2221 246899999999865 599999999999
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccccCCCC---CCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHH
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---EGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRD 147 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~---~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~D 147 (946)
+|+++|+|||+||||||||||||||||+|++. ....+|||||++++||..+.... ....|.|+|||+|||||+|+|
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~D 205 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFD 205 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEE
Confidence 99999999999999999999999999999643 24568999999999999987532 356899999999999999999
Q ss_pred hhcCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcE
Q 002261 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (946)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH 227 (946)
||++. ..+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 206 LL~~~--------------------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 265 (387)
T 2heh_A 206 LLNKK--------------------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSH 265 (387)
T ss_dssp TTTTT--------------------EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSE
T ss_pred CCCCC--------------------ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccce
Confidence 99753 3588999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCccchhhhhhhhhhhHHHHHHHHHhhh
Q 002261 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGD 306 (946)
Q Consensus 228 ~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~-~~g~r~~E~~~IN~sL~~L~~vi~~L~~ 306 (946)
+||+|+|.+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.
T Consensus 266 ~Ifti~v~~~-------------------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 326 (387)
T 2heh_A 266 ACFQIILRAK-------------------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 326 (387)
T ss_dssp EEEEEEEESS-------------------SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEC-------------------CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc
Confidence 9999999853 1357999999999999998876 5678899999999999999999999987
Q ss_pred hccCCCCCcccCCCCcchhhhhhc-cCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCc
Q 002261 307 EKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (946)
Q Consensus 307 ~~~~~~~~~ipyRdSkLTrlLqds-LgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknk 369 (946)
+. .|||||||||||||||+ |||||+|+|||||||+..+++||++||+||+||++|++.
T Consensus 327 ~~-----~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 327 NK-----AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TC-----SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CC-----CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 43 59999999999999999 699999999999999999999999999999999999874
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-85 Score=725.65 Aligned_cols=328 Identities=33% Similarity=0.507 Sum_probs=260.7
Q ss_pred CCCceEEEEEcCCCCCchhh----cCCceEEEEeCCCcc-e-----eecceeEEeceEecCCCCCccccccccchhhHHh
Q 002261 6 ENCSVKVAVHVRPLIGDERA----QGCKECVAVTHGNPQ-V-----QIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~----~~~~~~~~~~~~~~~-v-----~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~ 75 (946)
..++|+|+|||||+...+.. .....++.+...... . ....++|+||+||+ ++ +|++||+.++.|+|++
T Consensus 22 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~-sQ~~Vy~~~~~plv~~ 99 (359)
T 3nwn_A 22 TRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DA-SQDLVYETVAKDVVSQ 99 (359)
T ss_dssp --CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SC-CHHHHHHHHTHHHHHH
T ss_pred CCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CC-CHHHHHHHHHHHHHHH
Confidence 35799999999999876632 122334444322211 0 11236899999996 44 5899999999999999
Q ss_pred hhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhcCcccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 155 (946)
+|+|||+||||||||||||||||+|+..+...+|||||++++||+.+... ....|.|+|||+|||||+|+|||++....
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 178 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLSTLPYV 178 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTSSSTTS
T ss_pred HhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcC-CCCcEEEEEEEEEEecccccccccccccc
Confidence 99999999999999999999999998777778999999999999998773 56789999999999999999999875421
Q ss_pred cccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEE
Q 002261 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (946)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~ 235 (946)
. .....+.+++++. |++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|.
T Consensus 179 ~-------------~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~ 244 (359)
T 3nwn_A 179 G-------------PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLE 244 (359)
T ss_dssp C-------------TTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEE
T ss_pred c-------------cccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEE
Confidence 1 1245677888875 6999999999999999999999999999999999999999999999999998
Q ss_pred eeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCc
Q 002261 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (946)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ 315 (946)
+..... .+.....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++++ .|
T Consensus 245 ~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~----~h 308 (359)
T 3nwn_A 245 AHSRTL------------SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR----DH 308 (359)
T ss_dssp EC-------------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC---------
T ss_pred eecccc------------cCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCC----Cc
Confidence 754321 12456789999999999999999999999999999999999999999999987543 59
Q ss_pred ccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 316 ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 309 VPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999987
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-84 Score=725.39 Aligned_cols=325 Identities=36% Similarity=0.532 Sum_probs=248.1
Q ss_pred CCceEEEEEcCCCCCchhhcCCce---------------EEEEeCC-Cccee-------ecceeEEeceEecCCCCCccc
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKE---------------CVAVTHG-NPQVQ-------IGTHSFTFDHVYGNGGSPSSA 63 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~---------------~~~~~~~-~~~v~-------~~~~~f~FD~Vf~~~~s~q~~ 63 (946)
.++|+|+|||||+++.|...++.. ++.+... ..... ...+.|+||+||++++ +|++
T Consensus 21 ~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~-~Q~~ 99 (376)
T 2rep_A 21 KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGS-GQDE 99 (376)
T ss_dssp --CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTC-CHHH
T ss_pred CCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcc-cchh
Confidence 479999999999999987554221 1111110 00000 1236899999999765 5999
Q ss_pred cccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCC-CCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhh
Q 002261 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR-EGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEIL 141 (946)
Q Consensus 64 v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~-~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy 141 (946)
||+. +.|+|+++|+|||+||||||||||||||||+|+.. +...+|||||++++||..+.... ....|.|+|||+|||
T Consensus 100 Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 9998 57999999999999999999999999999999754 34678999999999999998753 357899999999999
Q ss_pred hHHHHHhhcCcccccccccCCCCCccccCCCCCceEEec--CCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCC
Q 002261 142 KEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNM 219 (946)
Q Consensus 142 ~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~ 219 (946)
||+|+|||++.... .....+.|+++ +.++++|.|++++.|.|++|++.+|..|..+|++++|.|
T Consensus 179 nE~i~DLL~~~~~~--------------~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~ 244 (376)
T 2rep_A 179 NETVRDLLATGTRK--------------GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQ 244 (376)
T ss_dssp TTEEEETTCCC----------------------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC---
T ss_pred CCEeeEcccccccc--------------ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccC
Confidence 99999999874310 12346788888 678999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCc----cchhhhhhhhhhhH
Q 002261 220 NNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDG----LRLKEGIHINRGLL 295 (946)
Q Consensus 220 n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g----~r~~E~~~IN~sL~ 295 (946)
|..|||||+||+|+|.+.... ......|+|+|||||||||++++++.| .|++|+.+||+||+
T Consensus 245 N~~SSRSH~Ifti~v~~~~~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~ 310 (376)
T 2rep_A 245 NERSSRSHSVFQLQISGEHSS--------------RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLS 310 (376)
T ss_dssp --CGGGSEEEEEEEEEEEESS--------------SCCEEEEEEEEEECCCCC------------------------CHH
T ss_pred CCCCCCceEEEEEEEEEEecC--------------CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHH
Confidence 999999999999999986431 134568999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 296 ALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 296 ~L~~vi~~L~~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
+||+||.+|+++. .|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 311 aLg~vI~aL~~~~-----~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 311 TLGLVIMALSNKE-----SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHHHHHHTTC-----SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcCC-----CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999998753 49999999999999999999999999999999999999999999999999864
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7.2e-84 Score=716.98 Aligned_cols=329 Identities=35% Similarity=0.522 Sum_probs=264.3
Q ss_pred CceEEEEEcCCCCC-chhhcCCceEEEEeCC-----Ccceee-------cceeEEeceEecCCCCCccccccccchhhHH
Q 002261 8 CSVKVAVHVRPLIG-DERAQGCKECVAVTHG-----NPQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVD 74 (946)
Q Consensus 8 ~~v~V~vRvRP~~~-~e~~~~~~~~~~~~~~-----~~~v~~-------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~ 74 (946)
++|+|+|||||+.. .| ..+..++.+... ...+.+ ..+.|+||+||++++ +|++||+. +.|+|+
T Consensus 3 ~nIrV~vRvRP~~~~~e--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~-v~~lv~ 78 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLE--NSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD-TNVDVFKE-VGQLVQ 78 (347)
T ss_dssp CEEEEEEEECCCCTTTC--CCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTC-CHHHHHHH-HHHHHG
T ss_pred CCeEEEEEeCCCCcccc--cCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCC-CHHHHHHH-HHHHHH
Confidence 68999999999987 44 233444444321 112322 237899999999865 58999998 679999
Q ss_pred hhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHhhcCcc
Q 002261 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVS 153 (946)
Q Consensus 75 ~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (946)
++|+|||+||||||||||||||||+|+ .+|||||++++||..|.... ....|.|+|||+|||||+|+|||+|..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~-----~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 153 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP-----GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN 153 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST-----TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC-----CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcc
Confidence 999999999999999999999999884 47999999999999998754 357899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceEEec-CCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002261 154 VSKSVTANGHAGKVSISGRPPIQIRES-SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (946)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i 232 (946)
.... .......+.|+++ +.++++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|
T Consensus 154 ~~~~----------~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 223 (347)
T 1f9v_A 154 NNKE----------DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFII 223 (347)
T ss_dssp --------------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEE
T ss_pred cccc----------ccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEE
Confidence 2110 0011245778876 4678999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 002261 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (946)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~ 312 (946)
+|.+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++.. .
T Consensus 224 ~v~~~~~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~--~ 287 (347)
T 1f9v_A 224 HLSGSNAK--------------TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS--T 287 (347)
T ss_dssp EEEEECC----------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC----
T ss_pred EEEEecCC--------------CCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccC--C
Confidence 99875421 1345789999999999999999999999999999999999999999999987652 2
Q ss_pred CCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 002261 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (946)
Q Consensus 313 ~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~ 371 (946)
..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|++.|.
T Consensus 288 ~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp -CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred CCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 36999999999999999999999999999999999999999999999999999998763
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=6.2e-84 Score=718.55 Aligned_cols=323 Identities=34% Similarity=0.518 Sum_probs=259.5
Q ss_pred CCCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee---------------cceeEEeceEecCCCCCccccccccch
Q 002261 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVA 70 (946)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------------~~~~f~FD~Vf~~~~s~q~~v~~~~~~ 70 (946)
..++|+|+|||||+...+. .++.+.+....+.+ ...+|+||+||+ ++ +|++||+.++.
T Consensus 21 ~~g~IrV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~-sQ~~Vy~~~~~ 93 (358)
T 2nr8_A 21 TRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DA-SQDLVYETVAK 93 (358)
T ss_dssp --CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SC-CHHHHHHHHTH
T ss_pred CCCCeEEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-Cc-CHHHHHHHHHH
Confidence 4689999999999876432 23333332222221 236899999995 44 58999999999
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhccccceEEEEeehhhhhhHHHHHhhc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLD 150 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~ 150 (946)
|+|+++|+|||+||||||||||||||||+|+..+...+|||||++++||..++.. ....|.|+|||+|||||.|+|||+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc-CCceEEEEEEEEEEeCCeeeECcC
Confidence 9999999999999999999999999999997766667999999999999999874 456899999999999999999998
Q ss_pred CcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEE
Q 002261 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (946)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if 230 (946)
+.+.. .....++.|++++ .|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||
T Consensus 173 ~~~~~-------------~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 238 (358)
T 2nr8_A 173 TLPYV-------------GPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 238 (358)
T ss_dssp SSTTS-------------CTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred Ccccc-------------CccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEE
Confidence 75421 0134678999999 679999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccC
Q 002261 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR 310 (946)
Q Consensus 231 ~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~ 310 (946)
+|+|++..... .+.....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++++
T Consensus 239 ~i~v~~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-- 304 (358)
T 2nr8_A 239 TIYLEAHSRTL------------SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK-- 304 (358)
T ss_dssp EEEEEEC-------------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC----
T ss_pred EEEEEEEeccC------------CCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 99999754321 1234568999999999999999999999999999999999999999999998754
Q ss_pred CCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 311 REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 311 ~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 305 --~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 305 --RDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp -----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred --CCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 259999999999999999999999999999999999999999999999999987
No 25
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.1e-83 Score=710.58 Aligned_cols=315 Identities=33% Similarity=0.534 Sum_probs=248.7
Q ss_pred CCCCceEEEEEcCCCCCchhhcCCceEEEEeC--CCcceeecceeEEeceEecCCCCCccccccccchhhHHhhhcCCCe
Q 002261 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTH--GNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA 82 (946)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~--~~~~v~~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ 82 (946)
.+.++|+|+|||||+.+.+ ..++..|+.+.+ ....+.+..+.|+||+||++.+ +|++||+.++.|+|+++|+|||+
T Consensus 19 ~~~~~VrV~vRvRP~~~~e-~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~-sQ~~Vy~~~~~plv~~~l~G~N~ 96 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFL-GRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATI-SQDEMYQALILPLVDKLLEGFQC 96 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEETTEEEECSEEECTTC-CHHHHHHHHTHHHHHHHHHTCCE
T ss_pred CCCCCeEEEEECCCCCccc-ccCCceEEEecCCCCCceEEecCcEEEcceEECCCC-CHHHHHHhhccchhhHhhCCCce
Confidence 3457999999999999877 455667777665 3445667789999999999865 49999999999999999999999
Q ss_pred eEEEeccCCCCccccccCCCC---CCCCcccHHHHHHHHHHHHHhccc--cceEEEEeehhhhhhHHHHHhhcCcccccc
Q 002261 83 TVLAYGQTGSGKTYTMGTGLR---EGFQTGLIPQVMNALFNKIETLRH--QMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm~g~~~---~~~~~Glipr~~~~lF~~i~~~~~--~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 157 (946)
||||||||||||||||+|+.. ....+|||||++++||..|..... ...|.|+|||+|||||+|+|||++....
T Consensus 97 tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-- 174 (344)
T 3dc4_A 97 TALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM-- 174 (344)
T ss_dssp EEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS--
T ss_pred EEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC--
Confidence 999999999999999988653 246789999999999999987543 3469999999999999999999864311
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002261 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (946)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~ 237 (946)
+.+ +..+.|+++++|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.
T Consensus 175 ---------------~~~--------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~ 231 (344)
T 3dc4_A 175 ---------------PMV--------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231 (344)
T ss_dssp ---------------BCC--------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS
T ss_pred ---------------ccc--------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec
Confidence 000 112358899999999999999999999999999999999999999999999742
Q ss_pred eccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 002261 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (946)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ip 317 (946)
...|+|+|||||||||++++++.|.+++||.+||+||++||+||.+|+.++ .|||
T Consensus 232 --------------------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-----~hiP 286 (344)
T 3dc4_A 232 --------------------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-----TVIP 286 (344)
T ss_dssp --------------------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-----SSCC
T ss_pred --------------------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-----CcCC
Confidence 136899999999999999999999999999999999999999999999764 4999
Q ss_pred CCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 002261 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (946)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~ 371 (946)
||||||||||||+|||||+|+|||||||+..+++||++||+||+||+.....|.
T Consensus 287 yRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 287 YRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred ccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999876553
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-83 Score=721.50 Aligned_cols=331 Identities=36% Similarity=0.537 Sum_probs=268.3
Q ss_pred CceEEEEEcCCCCCc-hhhcCCceEEEEeCCC---cceee-------cceeEEeceEecCCCCCccccccccchhhHHhh
Q 002261 8 CSVKVAVHVRPLIGD-ERAQGCKECVAVTHGN---PQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~-e~~~~~~~~~~~~~~~---~~v~~-------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~ 76 (946)
++|+|+|||||+.+. |...++..++...... ..+.+ ..+.|+||+||++++ +|++||+. +.|+|+++
T Consensus 59 gnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~-~Q~~Vf~~-v~~lv~~~ 136 (403)
T 4etp_A 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD-TNVDVFKE-VGQLVQSS 136 (403)
T ss_dssp CSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTC-CHHHHHHH-HHHHHHHH
T ss_pred CCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCC-chHHHHHH-HHHHHHHH
Confidence 799999999999877 4333222222211111 11111 237899999999865 48999987 67999999
Q ss_pred hcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHhhcCcccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 155 (946)
|+|||+||||||||||||||||+|+ .+|||||++++||..|.... ..+.|.|+|||+|||||.|+|||+|....
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~-----~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 211 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNP-----GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNN 211 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCT-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC----
T ss_pred hCCcceEEEEECCCCCCCceEeCCC-----CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccc
Confidence 9999999999999999999999874 36999999999999998753 35789999999999999999999875421
Q ss_pred cccccCCCCCccccCCCCCceEEecC-CCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002261 156 KSVTANGHAGKVSISGRPPIQIRESS-NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (946)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~-~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v 234 (946)
... ......+.|++++ .++++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 212 ~~~----------~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 281 (403)
T 4etp_A 212 KED----------TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281 (403)
T ss_dssp --------------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEE
T ss_pred ccc----------cccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEE
Confidence 110 1123456777765 57899999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002261 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (946)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (946)
.+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++.. ...
T Consensus 282 ~~~~~~--------------~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~--~~~ 345 (403)
T 4etp_A 282 SGSNAK--------------TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS--TKR 345 (403)
T ss_dssp EEEETT--------------TCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCT--TTS
T ss_pred EEeecC--------------CCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCC
Confidence 986532 1345689999999999999999999999999999999999999999999987643 245
Q ss_pred cccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 002261 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (946)
Q Consensus 315 ~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp~ 371 (946)
||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|+++|+..|.
T Consensus 346 hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 346 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp CCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred cCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999999999999999999999999999998763
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=2.9e-82 Score=716.75 Aligned_cols=317 Identities=36% Similarity=0.552 Sum_probs=261.1
Q ss_pred CCceEEEEEcCCCCCchhhcCCceEEEEeCCCcceee-----------cceeEEeceEecCCCCCccccccccchhhHHh
Q 002261 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (946)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-----------~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~ 75 (946)
.++|+|+|||||+.+.|...++ |+.+.++...+.+ +.+.|+||+||++.+ +|++||+. +.|+|++
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-~Q~~Vf~~-v~plv~~ 133 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS-SQSDIFEM-VSPLIQS 133 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC-------CCCEEECSEEECTTC-CHHHHHTT-THHHHHH
T ss_pred CCCEEEEEEcCCCCchhccCcc--eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCC-CHHHHHHH-HHHHHHH
Confidence 4799999999999998865443 3322222222221 246899999999865 58999985 7899999
Q ss_pred hhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHhhcCccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 154 (946)
+|+|||+||||||||||||||||+|. ...+|||||++++||..|.... ....|.|+|||+|||||.|+|||++..
T Consensus 134 ~l~G~n~tifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~- 209 (412)
T 3u06_A 134 ALDGYNICIFAYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ- 209 (412)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHTEE---TTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSC-
T ss_pred HHCCCceEEEEecCCCCCCeeEecCC---CCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCC-
Confidence 99999999999999999999999885 4469999999999999998743 357999999999999999999997643
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002261 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (946)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v 234 (946)
....+.+.+++.++++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 210 ----------------~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 273 (412)
T 3u06_A 210 ----------------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 273 (412)
T ss_dssp ----------------CCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEE
T ss_pred ----------------CCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEE
Confidence 1234666678899999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002261 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (946)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (946)
.+.... ......|+|+|||||||||.+ .|.|++|+.+||+||++||+||.+|+.+. .
T Consensus 274 ~~~~~~--------------~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~-----~ 330 (412)
T 3u06_A 274 IGRHAE--------------KQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQ-----D 330 (412)
T ss_dssp EEEETT--------------TTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTC-----S
T ss_pred EEEeCC--------------CCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccC-----C
Confidence 986532 235678999999999999975 46899999999999999999999998753 4
Q ss_pred cccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcc
Q 002261 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (946)
Q Consensus 315 ~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp 370 (946)
|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|+++|+..+
T Consensus 331 hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 331 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp CCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred CCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999998543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=8e-75 Score=711.00 Aligned_cols=319 Identities=35% Similarity=0.556 Sum_probs=246.7
Q ss_pred CceEEEEEcC----CCCCchhhcCCceEEEEeCC------Ccceee--------cceeEEeceEecCCCCCccccccccc
Q 002261 8 CSVKVAVHVR----PLIGDERAQGCKECVAVTHG------NPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECV 69 (946)
Q Consensus 8 ~~v~V~vRvR----P~~~~e~~~~~~~~~~~~~~------~~~v~~--------~~~~f~FD~Vf~~~~s~q~~v~~~~~ 69 (946)
..++|+|||| |....|...|....+.-.|. ..++.+ ..++|+||+||++++ +|++||+. +
T Consensus 374 ~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~v~~~-~ 451 (715)
T 4h1g_A 374 GNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ-SNDLVFEE-L 451 (715)
T ss_dssp CSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC-CHHHHGGG-T
T ss_pred hcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC-CHHHHHHH-H
Confidence 4789999999 65555544443222211121 122222 347999999998765 58999986 5
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc-ccceEEEEeehhhhhhHHHHHh
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DL 148 (946)
.|+|+++|+|||+||||||||||||||||+|+ .+|||||++++||+.|.... ....|.|+|||+|||||+|+||
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~-----~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DL 526 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP-----TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDL 526 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT-----TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEES
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccCCC-----CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEEC
Confidence 79999999999999999999999999999773 47999999999999998754 3568999999999999999999
Q ss_pred hcCcccccccccCCCCCccccCCCCCceEEec-CCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcE
Q 002261 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRES-SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (946)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH 227 (946)
|+|... ....+.++++ ..|+++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||
T Consensus 527 l~~~~~----------------~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH 590 (715)
T 4h1g_A 527 LNPKID----------------PNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSH 590 (715)
T ss_dssp SSCCCC----------------TTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSE
T ss_pred CCCCCC----------------CCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCcccccc
Confidence 987431 1234556654 56679999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhh
Q 002261 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307 (946)
Q Consensus 228 ~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~ 307 (946)
+||+|+|.+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+.+
T Consensus 591 ~i~~i~~~~~~~~--------------~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~ 656 (715)
T 4h1g_A 591 SIFIIDLQGYNSL--------------TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK 656 (715)
T ss_dssp EEEEEEEEEEETT--------------TCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEecC--------------CCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999986532 23567899999999999999999999999999999999999999999999865
Q ss_pred ccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 002261 308 KKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (946)
Q Consensus 308 ~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Ik 367 (946)
+ ..|||||||||||||||||||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 657 ~----~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 657 D----GSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp S----CCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred C----CCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 3 3599999999999999999999999999999999999999999999999999997
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=2e-30 Score=232.28 Aligned_cols=98 Identities=46% Similarity=0.724 Sum_probs=88.0
Q ss_pred hhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002261 287 GIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (946)
Q Consensus 287 ~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 366 (946)
+.+||+||++||+||.+|++++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~----~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i 76 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGT----KTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTI 76 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTC----CSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHHHhcC----CCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999864 359999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccchHHH-HHHHHHH
Q 002261 367 QNKPVVNRDLISSDM-QKLRQQL 388 (946)
Q Consensus 367 knkp~vN~d~~~~ei-~~Lr~ei 388 (946)
+|+|++|.++...++ .+++.++
T Consensus 77 ~~~~~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 77 KNTVSVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp EEEECCEEECCHHHHHHHHHHHH
T ss_pred cCcceeccCCCHHHHHHHHHHhh
Confidence 999999998776544 4455544
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=3.9e-28 Score=225.57 Aligned_cols=87 Identities=51% Similarity=0.803 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcc
Q 002261 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (946)
Q Consensus 291 N~sL~~L~~vi~~L~~~~~~~~~~~ipyRdSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp 370 (946)
|+||++||+||.+|+++. ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|+|
T Consensus 1 N~SL~~Lg~vi~aL~~~~----~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~ 76 (117)
T 3kin_B 1 NKSLSALGNVISALAEGT----KTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 76 (117)
T ss_dssp CCHHHHHHHHHHHHHHSC----CSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhCC----CCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCc
Confidence 899999999999999864 2599999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHH
Q 002261 371 VVNRDLISSDM 381 (946)
Q Consensus 371 ~vN~d~~~~ei 381 (946)
.+|.++...++
T Consensus 77 ~~n~~~~~~~l 87 (117)
T 3kin_B 77 SVNLELTAEEW 87 (117)
T ss_dssp CCCBCCCHHHH
T ss_pred eecCcCCHHHH
Confidence 99998766443
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.3e-25 Score=229.78 Aligned_cols=262 Identities=11% Similarity=0.129 Sum_probs=169.9
Q ss_pred CceEEEEEcCCCC-Cch-hhcCCceEEEEeCCCcceeecceeEEeceEecCCCCCcc--ccccccchhhHHhhhc-CCCe
Q 002261 8 CSVKVAVHVRPLI-GDE-RAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSS--AMFGECVAPLVDGLFQ-GYNA 82 (946)
Q Consensus 8 ~~v~V~vRvRP~~-~~e-~~~~~~~~~~~~~~~~~v~~~~~~f~FD~Vf~~~~s~q~--~v~~~~~~~lv~~~l~-G~n~ 82 (946)
|+|||+|||||.. +.. ...-...|+.+.. +.++|.||+||++..+ |+ .||++ +.++|+.+++ |||+
T Consensus 24 GnIRVFcrvrp~~~p~~~~v~y~~~~I~v~~-------~~k~f~FDRVf~p~s~-Qe~~~vf~E-~~~~i~scLd~GyNv 94 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLPENLLFDYENGVITQGL-------SEHVYKFNRVIPHLKV-SEDKFFTQE-YSVYHDMCLNQKKNF 94 (298)
T ss_dssp TCCEEEEEECGGGSCTTEEEETTTTEEEETT-------TCCEEECSEEEETTTS-CHHHHHHHT-THHHHHHHHHTTCCE
T ss_pred CceEEEEEeccccCCccceeecCccceeecC-------CCceEEeeeEECcccc-ccHHHHHHH-HHHHHHHHHhCCCce
Confidence 7999999999965 311 0111112233211 2389999999988655 77 89988 8999999999 9999
Q ss_pred eEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHh-ccccceEEEEeehhhhh-hHHHHHhhcCccccccccc
Q 002261 83 TVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET-LRHQMEFQLHVSFIEIL-KEEVRDLLDSVSVSKSVTA 160 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIy-~e~v~DLL~~~~~~~~~~~ 160 (946)
||||||||||||| ||++..+|...+. .. ++|.+++||+||| ||.++|||..++.
T Consensus 95 cIfSyGQTGsGKT----------------~ral~q~f~~~~~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~------ 150 (298)
T 2o0a_A 95 NLISLSTTPHGSL----------------RESLIKFLAEKDTIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSH------ 150 (298)
T ss_dssp EEEEECSSCCHHH----------------HHHHHHHHHSTTSHHH--HHEEEEEEEEEEECC-CEEETTSCCC-------
T ss_pred EEEEECCCCCCcc----------------HHHHHHHHHHhhhhcc--cceEEEEEEEEEecCCchHHhcCCCCC------
Confidence 9999999999999 9999999987644 22 7899999999999 9999999974321
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCC-HHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002261 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNT-LQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (946)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s-~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~q~~~ 239 (946)
+. .+.|+.+..+..+|.|++.++|.+ ++|+..++.-+.. +..|. +.-.|..+.+....
T Consensus 151 ----------~~-k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~- 209 (298)
T 2o0a_A 151 ----------ND-KDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRD- 209 (298)
T ss_dssp ----------------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESC-
T ss_pred ----------CC-cceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCc-
Confidence 11 467888889999999999999999 8988777632211 12221 22455555554311
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 002261 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (946)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyR 319 (946)
. .. +++ .....--++|+.+.... +...|.+ ++..+ .+-
T Consensus 210 -~------~~-~~~--~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~---------~~~ 247 (298)
T 2o0a_A 210 -S------KS-DGN--NDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK---------ESC 247 (298)
T ss_dssp -C----------------CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC----------CC
T ss_pred -c------cc-ccc--CCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc---------ccc
Confidence 0 00 111 11112346777763221 1222323 22211 356
Q ss_pred CCcchhhhhhccCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcc
Q 002261 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (946)
Q Consensus 320 dSkLTrlLqdsLgGns~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~Iknkp 370 (946)
.|+++-+|+.-|- ..+.++++++..+.. .-.-|..+++...++|.-
T Consensus 248 ~spi~~il~~ll~-~tks~~~~~l~~~~~----~~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 248 ETPIALVLKKLIS-DTKSFFLLNLNDSKN----VNKLLTISEEVQTQLCKR 293 (298)
T ss_dssp CSHHHHHHHHHHH-HSBCEEEEEECCGGG----HHHHHHHHHHHHHHTC--
T ss_pred CCcHHHHHHHHHh-cCcceEEEEecCCCc----hhHHHHHHHHhhcccCcc
Confidence 7888888887663 457788999876542 223588888888888753
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.43 E-value=7.4e-08 Score=124.08 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=39.1
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 369 KPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (946)
Q Consensus 369 kp~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee 440 (946)
+|.+.......++..++.++..++..+.. ....+..+..++..|+.+...+..++..+...+..++.
T Consensus 847 kpLl~~a~~~~El~~L~~eL~el~~~L~~-----le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~ 913 (1184)
T 1i84_S 847 XPLLKVTRQEEEMQAKDEELQRTKERQQK-----AEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913 (1184)
T ss_dssp TTTCCCCTHHHHCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333455666777777777776643 23345566666667777777666666655555544443
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.83 E-value=2.9e-05 Score=100.06 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.5
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.|.||+..|-+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999775
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.63 E-value=0.00047 Score=63.92 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK 606 (946)
Q Consensus 527 ~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k 606 (946)
..+...|+..|.+|..++..+..++..+..++.++....++...|+.++. .....+|.++..|++.... ..-.+..
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-~~r~~~E~di~~lrK~lD~---~~l~r~d 87 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQREEAENTLQSFRQDVDN---ASLARLD 87 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhhhcccH---HHHHHHH
Confidence 34567899999999999999999999999999999888888888888887 4568899999999887665 7777889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 607 SDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (946)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~kv~L~~~~k 633 (946)
+|.++..|++||..||+...+-++.|+
T Consensus 88 LE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877766554
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.55 E-value=0.00025 Score=66.88 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=84.2
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 002261 368 NKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQE 447 (946)
Q Consensus 368 nkp~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~ 447 (946)
.+|.++......+|..+..++..|+..+.. .....+.+...+..|..+.+.|..+|+.++..++.++++...+
T Consensus 2 vKPLL~~~~~e~E~~~~~eel~~lke~l~k-----~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L-- 74 (129)
T 2fxo_A 2 SSPLLKSAEREKEMASMKEEFTRLKEALEK-----SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL-- 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Confidence 578888888889999999999999999954 3456778899999999999999999999999988887765544
Q ss_pred CCccccchhhHhhhhcccccccchhhhhhcCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 448 GPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKES 516 (946)
Q Consensus 448 ~~~~~~k~~eLe~~l~~l~~~~~~l~e~~~~~~~~e~ee~~~e~e~~~~q~~l~~el~~L~~~Le~kE~ 516 (946)
.....+|+..+..+..+. .+++.....+.....+|+.++.+|..+|+..+.
T Consensus 75 ----~~~k~eLe~~l~el~~rl--------------eeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 75 ----IKNKIQLEAKVKEMNKRL--------------EDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443332221 222223334444455555555555555555543
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.28 E-value=0.00066 Score=65.48 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CccccchhhHhhhhcccccccchhhhhhcCCCCchHHHHHH
Q 002261 411 KGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAK 489 (946)
Q Consensus 411 ~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~~~~~~~~-~~~~~k~~eLe~~l~~l~~~~~~l~e~~~~~~~~e~ee~~~ 489 (946)
.++|..|+.++.+++..|+.+.+..+.+.+..+++... ......+.+|++.+..++.....+...+...+.....+...
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666555554322 22233444444444333332222222222222222344445
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 490 EWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQ 548 (946)
Q Consensus 490 e~e~~~~q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~ 548 (946)
....+....+|+..+..|..+|+.......++. ..++++.++|..||++...++
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~-----~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE-----GERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Confidence 555566667777777777777666555554433 556667777777777777766
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.93 E-value=0.0023 Score=55.55 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002261 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ 616 (946)
|.+|..++..+..++..+..++.++....++...|+.++. ...+.+|.++..||+.... +.-.|..+|.++..|++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~-~~R~~~E~d~~~LrkdvD~---a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQREEAENTLQSFRQDVDN---ASLARLDLERKVESLQE 77 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999998877778888998888 5668999999999988776 88889999999999999
Q ss_pred HHHHHHH
Q 002261 617 EIQSIKA 623 (946)
Q Consensus 617 ei~~lk~ 623 (946)
||..||+
T Consensus 78 El~fLkk 84 (86)
T 3swk_A 78 EIAFLKK 84 (86)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999985
No 38
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.56 E-value=0.91 Score=47.14 Aligned_cols=24 Identities=4% Similarity=0.288 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 538 MELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 538 ~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
..+..++..+..+.+.+...+..+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556666666666665555443
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.01 E-value=1.4 Score=43.63 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 736 SANVHEVRFKYEKQSQVQAALADELTI 762 (946)
Q Consensus 736 ~~~~~e~~~~~e~l~e~R~~l~~el~~ 762 (946)
...+.+++..|...++..+-|+.+|..
T Consensus 129 ~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 129 IMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888899999999988888875
No 40
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.94 E-value=0.4 Score=46.29 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhH
Q 002261 498 NTMDKELNELNKRLEQKESEMKLFGDIDTE--ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~~k~~~~--~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~ 575 (946)
..|++++.+++..|...-+...++-|..++ ....+.+..+.+|.+.+..|+..++.|..++..+.+.-+ ..+.-+..
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~-qEr~~r~q 87 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE-AERRDRGH 87 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445667777777777665555554443332 334556677778888888888888777777766543211 11111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002261 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (946)
....+.+|+..+..|..+... +.---.+...+.+.|++.|..+.+.+.-+
T Consensus 88 ~se~~~elq~ri~~L~~El~~---~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKH---LKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223345555554444332221 22222344444555555555555544444
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.51 E-value=0.19 Score=63.67 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHH
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~ 576 (946)
...+..++..|.++++.++....... ........+++++.+|++++.++.+|++.++..+..+ +++.
T Consensus 955 ~~~~~~e~~~L~~~l~~le~~~~e~~--~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~-----------~~~L 1021 (1080)
T 2dfs_A 955 EITYSTETEKLRSDVERLRMSEEEAK--NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY-----------KHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 34566777777777666665433221 2334455666777777777777777777776555443 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002261 577 TLKLKALEAQILELKKKQES 596 (946)
Q Consensus 577 ~~kl~~lE~~~~~Lk~~~~~ 596 (946)
+.++..|+++...|++...+
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666655555544433
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.43 E-value=0.31 Score=61.69 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 002261 583 LEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEF 662 (946)
Q Consensus 583 lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~ 662 (946)
++.++..|++...+...+.+.+...+.+++.|++++..++....++.+..+.--++....+..++..+..|+++..+++.
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555556666777777777777777766666665544444444445666677777777777777
Q ss_pred HHHHHHH
Q 002261 663 ERHKLEA 669 (946)
Q Consensus 663 e~~kle~ 669 (946)
++..|+.
T Consensus 1038 q~~~l~~ 1044 (1080)
T 2dfs_A 1038 EKEELNR 1044 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666663
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.41 E-value=2.7 Score=44.10 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002261 607 SDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~ 624 (946)
++..+..+.+.+..++..
T Consensus 109 lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.29 E-value=2.8 Score=43.95 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002261 609 EAAKRLQAEIQSIKAQKV 626 (946)
Q Consensus 609 ~~~~~L~~ei~~lk~~kv 626 (946)
.++..|+.||..++....
T Consensus 90 kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSN 107 (256)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 45
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.77 E-value=1 Score=42.05 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=36.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002261 568 HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (946)
Q Consensus 568 ~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~ 623 (946)
.+.+-+.+.+.++.+++.+ |.........|...|++++..+..|..+|.++..
T Consensus 73 ~L~~~k~eLe~~l~el~~r---leeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKR---LEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777766 4444455666888888888888888888877643
No 46
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=94.66 E-value=0.1 Score=45.57 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=51.7
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002261 367 QNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHC 441 (946)
Q Consensus 367 knkp~vN~d~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~~lee~ 441 (946)
+.+|.++......+|..+..++..++..+.. .....+.+..+...|..+.++|..++.+..++|..+...
T Consensus 2 kVKPLL~~~~~eeEm~~~eeel~~lke~l~k-----~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 2 SHMPLLSIARQEEEMKEQLKQMDKMKEDLAK-----TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5689999988899999999999999999964 345677889999999999999999877777777666443
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.29 E-value=0.38 Score=40.20 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 846 NLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (946)
Q Consensus 846 ~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~ 907 (946)
..+..|+..+.+++...+-++++|...+.....+.++|++++.++.+|..+++.+.+.+..+
T Consensus 10 ~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 10 VTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999988874
No 48
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.35 E-value=10 Score=36.21 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L 614 (946)
.++.+|+.++..+....+.|... .+....-.+.|+.+|+.|..+ |+.....-....+.-.+++..+..|
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~s--------eekasqrEd~yEeqIk~L~~k---LKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQ--------AEKYSQKEDKYEEEIKVLSDK---LKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhh--------hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544433333322 122333446677777777777 5555555555667777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002261 615 QAEIQSIKAQKVQLQNKIKQE 635 (946)
Q Consensus 615 ~~ei~~lk~~kv~L~~~~k~e 635 (946)
.+++..-|.....+...|..-
T Consensus 111 Ed~L~~~Kek~~~i~~eLd~t 131 (155)
T 2efr_A 111 EDELYAQKLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877776666643
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.77 E-value=0.026 Score=55.88 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=31.0
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++||...... ..+..++.. +..++.++--.-...|+-||++||||||.+
T Consensus 6 ~~~f~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKN-VSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCS-HHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCC-HHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45788766432 224455433 344555443333456788999999999988
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=90.35 E-value=4.9 Score=36.14 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhH
Q 002261 660 NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANV 739 (946)
Q Consensus 660 ~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~~ 739 (946)
.+..+..-..++.+|..+|+-++..++..+..|+..... ..
T Consensus 32 Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq---------------------------------------~q 72 (112)
T 1x79_B 32 LEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQ---------------------------------------AK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HH
Confidence 334455555588888889999999999988888866542 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002261 740 HEVRFKYEKQSQVQAALADELTILKQVDQLS 770 (946)
Q Consensus 740 ~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~ 770 (946)
.++...+.+|...|+.++.+|..|..+.++.
T Consensus 73 ~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 73 RDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3566788899999999999999998865553
No 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.14 E-value=77 Score=44.61 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=13.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
--|+.+|+||+|||-++
T Consensus 1305 ~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp CCCEEESSTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34678899999999665
No 52
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.22 E-value=3.1 Score=38.67 Aligned_cols=73 Identities=18% Similarity=0.330 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002261 796 ERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQ 875 (946)
Q Consensus 796 ~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~ 875 (946)
.+|..|+.++....++...|...+.+++.+.. .++.+.+..|..++.+
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~--------------------------------~~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGE--------------------------------LALKDARNKLAELEEA 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHh
Confidence 57788888888877777788878888777765 5555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002261 876 LNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (946)
Q Consensus 876 ~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~ 910 (946)
+..+ +.++..++.+|+..++.+++-
T Consensus 91 L~~~----------r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 91 LQKA----------KQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 6655 667788888888888876553
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.01 E-value=3.3 Score=38.64 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002261 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKE 874 (946)
Q Consensus 795 ~~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~ 874 (946)
..+|..|+.++....++...|...+.+++.+.. .++.+.+..|..++.
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~--------------------------------~~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYC--------------------------------MQLAQIQEMIGSVEE 91 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHH
Confidence 468888888888888888888888888888765 556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002261 875 QLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (946)
Q Consensus 875 ~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~ 910 (946)
++..+ +.++..++.+|+..++.+++-
T Consensus 92 eL~~~----------r~em~~ql~EYq~Ll~vKl~L 117 (131)
T 3tnu_A 92 QLAQL----------RCEMEQQNQEYKILLDVKTRL 117 (131)
T ss_dssp HHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 66666 667778888888888876543
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.84 E-value=3.8 Score=48.36 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 646 REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 646 ~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.++++..++++-++.+.++.+++..-+.++..+.+-.+|.+..+.++++.++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555566666666666666666666777777788887766
No 55
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.69 E-value=64 Score=45.37 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.2
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
....+|+..|+||||||.+.
T Consensus 904 ~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 904 NINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred HheeeEEEECCCCCCHHHHH
Confidence 45667899999999999764
No 56
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.00 E-value=15 Score=33.06 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 735 VSANVHEVRFKYEKQSQVQAALADELTI 762 (946)
Q Consensus 735 ~~~~~~e~~~~~e~l~e~R~~l~~el~~ 762 (946)
...++.+++..|..-++.++-|+.||..
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999873
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.95 E-value=6.5 Score=46.31 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002261 541 EEEKRIVQQE 550 (946)
Q Consensus 541 e~ei~~l~kE 550 (946)
+..+..+..+
T Consensus 476 ~~~l~~~~~~ 485 (597)
T 3oja_B 476 EQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 58
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.83 E-value=0.52 Score=49.99 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCCCchhhcCCceEEEEeCCCccee--ecceeEEeceEecCCCCCccccccccchhhHHhhh-cCCCeeE
Q 002261 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ--IGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATV 84 (946)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~--~~~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l-~G~n~ti 84 (946)
|.||+++=+-+-..++ -+.|.-....+. ...+.|.|++|++....+..+++..-.++.++-++ .+.|+.|
T Consensus 59 G~IRcFAYi~~~~~p~-------~~~idY~~~~It~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nfsl 131 (333)
T 4etp_B 59 GTMRVYAYVMEQNLPE-------NLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNL 131 (333)
T ss_dssp TCCEEEEEECCSSCCS-------SCEEETTTTEEEC--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEEECcccCCc-------cEEEecccceEeecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeE
Confidence 6777777776532221 122222222222 23579999999976554445555555799999999 8999999
Q ss_pred EEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHHhcc--ccceEEEEeehhhhhhHH-HHHhhcCcc
Q 002261 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR--HQMEFQLHVSFIEILKEE-VRDLLDSVS 153 (946)
Q Consensus 85 ~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~--~~~~~~v~vS~~EIy~e~-v~DLL~~~~ 153 (946)
|..|..- .+.+...|+..+.... -..+|.|++-|+.+.++. ..|||.+..
T Consensus 132 Isis~~~-------------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~ 184 (333)
T 4etp_B 132 ISLSTTP-------------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYS 184 (333)
T ss_dssp EEEESSC-------------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC--
T ss_pred EEecCCC-------------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhcccc
Confidence 9988430 1223444444454420 025788999998887775 689998753
No 59
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.56 E-value=0.072 Score=53.58 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=29.1
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCC-eeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n-~ti~ayGqtgSGKT~Tm 98 (946)
.++||.+.... ..+..++.. +..++...-.++. ..|+-||++|+||||.+
T Consensus 21 ~~~f~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLND-DGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSS-HHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCC-hhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 45777766432 123334432 2333333322322 67899999999999987
No 60
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.16 E-value=0.14 Score=55.05 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=29.2
Q ss_pred eceEecCCCCCccccccccchhhHHhhhc--CCC--eeEEEeccCCCCccccc
Q 002261 50 FDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYN--ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 50 FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~--G~n--~ti~ayGqtgSGKT~Tm 98 (946)
||.+|+..-. ...+.+..+..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~-~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYI-APAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEEC-CHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccC-CHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 5555543221 234445555566666553 222 36888999999999876
No 61
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.12 E-value=0.086 Score=57.28 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=20.3
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++...-.|....|+-||++|+||||.+
T Consensus 142 ~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred HHHHhccccCCceEEEECCCCCCHHHHH
Confidence 3444333334567889999999999998
No 62
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.16 E-value=24 Score=33.68 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 002261 611 AKRLQAEIQSIK 622 (946)
Q Consensus 611 ~~~L~~ei~~lk 622 (946)
.-.|.++|..+|
T Consensus 142 ~~~~~~~~~~~~ 153 (155)
T 2efr_A 142 NYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 334455555544
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.46 E-value=10 Score=33.00 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002261 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~ 612 (946)
|-+|+..||++...|+.+...+... ....+..-|+..+.+ |++.... +...+.+++.++.
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~l~~~----------~~~~~~~~ye~~i~~-------Lr~~i~~---~~~ek~~l~~e~d 80 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQLKGQ----------GKSRLGDLYEEEMRE-------LRRQVDQ---LTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----------cCCCcHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHH
Confidence 4577888888888877766555432 112344445444444 4444333 5566778888888
Q ss_pred HHHHHHHHHHHH
Q 002261 613 RLQAEIQSIKAQ 624 (946)
Q Consensus 613 ~L~~ei~~lk~~ 624 (946)
.|..++.++|..
T Consensus 81 nl~~~~~~~k~K 92 (93)
T 3s4r_A 81 NLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 899999888754
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.31 E-value=0.35 Score=52.55 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.0
Q ss_pred hhcCCCeeEEEeccCCCCccccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+-.|...+|+-||++|+|||.+.
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34678889999999999999887
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.97 E-value=0.28 Score=47.84 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=23.9
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 455566666677778999999999999988
No 66
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.48 E-value=0.28 Score=55.68 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc--CC--CeeEEEeccCCCCcccccc--------------CCCCCCCC
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--GY--NATVLAYGQTGSGKTYTMG--------------TGLREGFQ 107 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G~--n~ti~ayGqtgSGKT~Tm~--------------g~~~~~~~ 107 (946)
.-+||.|-|-+. .-..+.+.++.|+.. ..|. |. .-.|+-|||+|+|||++.- |+.-....
T Consensus 177 ~~t~~digGl~~-~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 177 TETYSDVGGLDK-QIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp SCCGGGSCSCHH-HHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCChHhcCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 457777776533 234556666666653 3443 32 3579999999999998761 11002234
Q ss_pred cccHHHHHHHHHHHHHhcc
Q 002261 108 TGLIPQVMNALFNKIETLR 126 (946)
Q Consensus 108 ~Glipr~~~~lF~~i~~~~ 126 (946)
.|--.+.++.+|.......
T Consensus 256 vGese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 6788899999998876643
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.50 E-value=0.39 Score=46.78 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=23.5
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 445555555676778899999999999987
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.27 E-value=0.36 Score=50.72 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=21.3
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|+||.+.+.+ ..... +...+..+. ..+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~-----~~~~~-~~~~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA-----NSFLE-VLEQVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC-----HHHHH-HHHHHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC-----HHHHH-HHHHHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 47899988632 12222 122233332 33567889999999999876
No 69
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=82.20 E-value=3.7 Score=35.90 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 525 DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 525 ~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
....+...|+..|.+|..++..+..++..+..++.++.
T Consensus 46 ~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 46 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778999999999999999999999998888764
No 70
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.68 E-value=0.29 Score=53.57 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=29.3
Q ss_pred eeEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|+|+.|++.+ .+. ..+...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~-----~~~----~~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE-----DMK----LALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH-----HHH----HHHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH-----HHH----HHHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 468899988632 222 12333444445556999999999999877
No 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.58 E-value=0.35 Score=52.50 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=27.8
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|+||.++.. .. +...+.. +..++..-- +....|+-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g-~~-~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVG-EG-NRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCC-TT-THHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCC-Cc-HHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 5788887631 12 3333322 223332211 13356889999999999988
No 72
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.06 E-value=0.54 Score=51.80 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=30.8
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCCe--eEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA--TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~--ti~ayGqtgSGKT~Tm 98 (946)
.++||.+++.+ .+. ..+..++..+-.|... .|+-||++|+|||++.
T Consensus 40 ~~~~~~ivG~~-----~~~-~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQL-----AAR-RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESCH-----HHH-HHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccChH-----HHH-HHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 45688888632 121 1234455566666654 8999999999999887
No 73
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.96 E-value=24 Score=30.35 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 002261 597 QVELLKQKHKSDEAAKRLQAEI 618 (946)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei 618 (946)
..+|.+.|..++.++..|+..+
T Consensus 65 ~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 65 VEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555443
No 74
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.95 E-value=0.75 Score=46.83 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+....|+-||++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35678899999999999988
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.90 E-value=0.39 Score=51.06 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=38.2
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhcCCC----eeEEEeccCCCCccccc---cCCC----------C-CCCC
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGYN----ATVLAYGQTGSGKTYTM---GTGL----------R-EGFQ 107 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~G~n----~ti~ayGqtgSGKT~Tm---~g~~----------~-~~~~ 107 (946)
..+||.|-+.+.. -+.+.+.++.|+-. .+|.+++ ..|+-||++|||||+.+ .|.. . ....
T Consensus 6 ~~~~~di~g~~~~-~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDI-REELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHH-HHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHH-HHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 4567777764322 33444444555432 2344332 23899999999999886 1100 0 1112
Q ss_pred cccHHHHHHHHHHHHH
Q 002261 108 TGLIPQVMNALFNKIE 123 (946)
Q Consensus 108 ~Glipr~~~~lF~~i~ 123 (946)
.|-..+.+..+|+...
T Consensus 85 ~~~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 85 VGESERAVRQVFQRAK 100 (274)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445667778887653
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.48 E-value=24 Score=40.20 Aligned_cols=35 Identities=6% Similarity=-0.094 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 634 ~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
.|-++++........++.+|+++..+.+.++..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 33333444444444444555544444444444444
No 77
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.25 E-value=0.78 Score=46.52 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=19.8
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4556678876 678899999999874
No 78
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.08 E-value=0.82 Score=51.67 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=23.3
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+++..++..-...|+..|+||||||+||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3677777666678899999999999998
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=77.77 E-value=0.88 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=19.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4556677866 577889999999765
No 80
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.30 E-value=0.29 Score=51.41 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.6
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 445899999999999987
No 81
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.26 E-value=51 Score=31.34 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 603 ~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
.+...|.....+..||++|-...=.--++|=.+. |......++.+.+|+++....+..+..++
T Consensus 73 ~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 73 LRTKAEEEADKLNKEVEDLTASLFDEANNMVADA---RKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666555444333333222 33333344444444444444444333333
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.00 E-value=0.92 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=19.4
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 4556677866 567789999999874
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.60 E-value=1.5 Score=41.74 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-||++||||||.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677999999999998
No 84
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.55 E-value=0.32 Score=52.39 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=28.8
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc----CCCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ----GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~----G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++||.|.+.+.. -..+.+.+..|+.. ..|. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~-~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDV-KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHH-HHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHH-HHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4678887764321 22333332223211 1121 23457999999999999877
No 85
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.53 E-value=61 Score=31.90 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 002261 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKS 607 (946)
Q Consensus 529 ~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~-~~~l~k~k~k~ 607 (946)
...+|.....++..+...++.|.+.+... .+-|..+++..|..+++++.+|+.+... ..++..+|.|.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqes-----------SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEG-----------SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555432 2345556666666666666666543322 33344444444
Q ss_pred HHH
Q 002261 608 DEA 610 (946)
Q Consensus 608 e~~ 610 (946)
...
T Consensus 80 ~~~ 82 (189)
T 2v71_A 80 EHQ 82 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 86
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.46 E-value=0.33 Score=51.46 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=29.3
Q ss_pred eeEEeceEecCCCCCccccccccchhhH-----HhhhcCCCeeEEEeccCCCCccccc
Q 002261 46 HSFTFDHVYGNGGSPSSAMFGECVAPLV-----DGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 46 ~~f~FD~Vf~~~~s~q~~v~~~~~~~lv-----~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++||.+.+.+.. -..+...+..|+. ..+--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQ-MQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHH-HHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHH-HHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 35788888864321 2233322222211 1111134556899999999999877
No 87
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.42 E-value=1.4 Score=49.72 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=46.6
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc--CC--CeeEEEeccCCCCcccccc--------------CCCCCCCC
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--GY--NATVLAYGQTGSGKTYTMG--------------TGLREGFQ 107 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G~--n~ti~ayGqtgSGKT~Tm~--------------g~~~~~~~ 107 (946)
.-+||.|-|-+. .-+.+.+.+..|+.. ..|. |. .-.|+-||++|+|||++.- |+.--...
T Consensus 168 ~v~~~digGl~~-~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 168 DVTYADVGGLDM-QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246 (428)
T ss_dssp SCCGGGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCHHHhccHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc
Confidence 356666665432 223444444444432 2333 33 3459999999999998761 11112344
Q ss_pred cccHHHHHHHHHHHHHhc
Q 002261 108 TGLIPQVMNALFNKIETL 125 (946)
Q Consensus 108 ~Glipr~~~~lF~~i~~~ 125 (946)
.|--++.++.+|......
T Consensus 247 ~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp CSHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHc
Confidence 688899999999987664
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=76.09 E-value=2.2 Score=42.58 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++.+|+||||||++.
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 4555667765 567899999999987
No 89
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.05 E-value=0.35 Score=51.72 Aligned_cols=51 Identities=25% Similarity=0.437 Sum_probs=29.8
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhcC---CCeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQG---YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~G---~n~ti~ayGqtgSGKT~Tm 98 (946)
..+||.|.+.+.. -..+...+..|+.. .++.| ....|+-||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVA-KQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHH-HHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHH-HHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888764321 22333333333321 12233 3568999999999999877
No 90
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.50 E-value=50 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002261 743 RFKYEKQSQVQAALADELTILK 764 (946)
Q Consensus 743 ~~~~e~l~e~R~~l~~el~~l~ 764 (946)
...|+.|+...-+|..|+.--+
T Consensus 104 l~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 104 NQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777767766665433
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.89 E-value=1.3 Score=46.58 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=20.8
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++++++--.-...|...|+||||||++|
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHH
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHH
Confidence 4555554344557788899999999998
No 92
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.55 E-value=1.2 Score=49.24 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.8
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+.+.+++.--.+.|+..|+||||||+||
T Consensus 111 ~~~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 111 MGEVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CCHHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred ChHHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 456777777666678889999999999999
No 93
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=74.37 E-value=0.73 Score=47.47 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.3
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..++.|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34566778877 678899999999875
No 94
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.23 E-value=41 Score=29.63 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002261 577 TLKLKALEAQILELKKK 593 (946)
Q Consensus 577 ~~kl~~lE~~~~~Lk~~ 593 (946)
++...+.|.++..|.++
T Consensus 78 ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 78 EENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 95
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.21 E-value=0.94 Score=45.19 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.9
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|....|+-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445999999999999887
No 96
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=74.19 E-value=1.2 Score=45.96 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=20.4
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.|.| ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34566778877 678899999999874
No 97
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=73.68 E-value=24 Score=29.98 Aligned_cols=41 Identities=10% Similarity=0.328 Sum_probs=25.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002261 860 FQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (946)
Q Consensus 860 ~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~ 910 (946)
.++.+.+..|..++.++..+ +.++..++.+|++.++.+++-
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~----------r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNM----------KEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555 566777788888887776553
No 98
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.23 E-value=1 Score=49.58 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.3
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+...+|+-||++|+|||+++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45568999999999999988
No 99
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.75 E-value=58 Score=29.91 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002261 743 RFKYEKQSQVQAALADELTILK 764 (946)
Q Consensus 743 ~~~~e~l~e~R~~l~~el~~l~ 764 (946)
...|+.|+...-+|..|+.--+
T Consensus 102 l~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 102 LREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777765443
No 100
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=72.62 E-value=1.4 Score=45.18 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=19.4
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 4556678877 567789999999875
No 101
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.44 E-value=60 Score=30.64 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 002261 675 KMVLQRKTEEAAIATKRL 692 (946)
Q Consensus 675 ~~vl~rk~eE~~a~~k~L 692 (946)
+..++||..||++.+.++
T Consensus 131 ~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 131 ARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 467788888988877665
No 102
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.37 E-value=0.93 Score=51.67 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..+|-||++|+||||.+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46889999999999998
No 103
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.08 E-value=1.8 Score=48.36 Aligned_cols=78 Identities=23% Similarity=0.246 Sum_probs=48.7
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc--CC--CeeEEEeccCCCCccccc--------------cCCCCCCCC
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--GY--NATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G~--n~ti~ayGqtgSGKT~Tm--------------~g~~~~~~~ 107 (946)
.-+||.|-|-+. .-..+.+.+.-|+.. .+|. |. ...|+-||++|+|||++. .|+.-....
T Consensus 144 ~v~~~dIgGl~~-~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 144 DSTYDMVGGLTK-QIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp SCCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCHHHhCCHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 356777766432 234555555566553 3443 33 357999999999999876 111011234
Q ss_pred cccHHHHHHHHHHHHHhc
Q 002261 108 TGLIPQVMNALFNKIETL 125 (946)
Q Consensus 108 ~Glipr~~~~lF~~i~~~ 125 (946)
.|--.+.++.+|......
T Consensus 223 vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREH 240 (405)
T ss_dssp TTHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 577889999999887664
No 104
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.75 E-value=1.2 Score=51.04 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=30.4
Q ss_pred eEEeceEecCCCCCccccccccchhhHHhhhcCCC--eeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n--~ti~ayGqtgSGKT~Tm 98 (946)
.|.||.|.+. +.+... +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG~-----~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQ-----ENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESC-----HHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCH-----HHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 5677888863 223222 3445666666653 36888999999999876
No 105
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.73 E-value=1.4 Score=46.40 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=23.2
Q ss_pred hhhHHhhhcCC---CeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (946)
...+..++.|. --||+-||++|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34567788887 347999999999999876
No 106
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.65 E-value=0.5 Score=52.23 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.3
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+....|+-||++|+|||++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 45668999999999999887
No 107
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=71.52 E-value=1.1 Score=47.09 Aligned_cols=21 Identities=33% Similarity=0.237 Sum_probs=18.3
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
......|+-||++|+|||++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999987
No 108
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.44 E-value=1.4 Score=44.38 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.5
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4566778877 567789999999876
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.24 E-value=1.1 Score=45.27 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHhhhcCCC--eeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n--~ti~ayGqtgSGKT~Tm 98 (946)
+..++.|.- -+++-||+.|+|||++.
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 444555532 46999999999999886
No 110
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.99 E-value=1.1 Score=46.87 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=20.4
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.|.| +++.|+||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 35666778877 578899999999875
No 111
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=70.98 E-value=0.53 Score=51.27 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=29.8
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhcCC---CeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY---NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (946)
..+||.|.+.+.. -..+.+.+..|+-. .+|.|. ...|+-||++|+|||+..
T Consensus 8 ~~~~~di~G~~~~-k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGA-KEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHH-HHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHH-HHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3477777764321 22333333333321 344442 246899999999999887
No 112
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.85 E-value=2.3 Score=48.13 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=46.2
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc--CC--CeeEEEeccCCCCcccccc--------------CCCCCCCC
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--GY--NATVLAYGQTGSGKTYTMG--------------TGLREGFQ 107 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G~--n~ti~ayGqtgSGKT~Tm~--------------g~~~~~~~ 107 (946)
..+||.|-|-+. .-..+.+.+..|+.. .+|. |. .-.|+-||++|+|||++.- |+.--...
T Consensus 177 ~v~~~digGl~~-~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 177 EITFDGIGGLTE-QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp SSCSGGGCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCChhHhCChHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 345666665332 233444444445442 3443 33 3579999999999998760 11011234
Q ss_pred cccHHHHHHHHHHHHHhc
Q 002261 108 TGLIPQVMNALFNKIETL 125 (946)
Q Consensus 108 ~Glipr~~~~lF~~i~~~ 125 (946)
.|--...++.+|......
T Consensus 256 ~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEH 273 (437)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 577788999999887664
No 113
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=69.85 E-value=1.7 Score=44.25 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566788775 67789999999875
No 114
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.67 E-value=42 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002261 610 AAKRLQAEIQSIKAQKVQL 628 (946)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L 628 (946)
++..|+.++..+..+.++|
T Consensus 111 e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 115
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=69.50 E-value=1.7 Score=46.57 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=20.5
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|-+..++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 355667774455788999999999875
No 116
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=69.39 E-value=1.5 Score=45.05 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=19.8
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..+..|. .++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34555666675 4577899999999876
No 117
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=69.15 E-value=1.7 Score=45.12 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-||++|||||+.+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999988
No 118
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=69.13 E-value=1.8 Score=44.88 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=19.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4666778877 566789999999875
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.95 E-value=1.6 Score=48.47 Aligned_cols=29 Identities=34% Similarity=0.367 Sum_probs=21.5
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+++..+.-.-...|+..|+||||||++|
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34455554344567888999999999999
No 120
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=68.74 E-value=14 Score=31.62 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=24.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002261 860 FQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (946)
Q Consensus 860 ~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~ 910 (946)
.++.+.+..|..++.++..+ +.++..++.+|+..++.+.+-
T Consensus 28 ~~l~~~q~~i~~lE~el~~~----------r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEM----------RARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555555544 556777777777777775543
No 121
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.69 E-value=43 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002261 592 KKQESQVELLKQKHKSDEAAKRLQAEI 618 (946)
Q Consensus 592 ~~~~~~~~l~k~k~k~e~~~~~L~~ei 618 (946)
.+...+.++...|..+..++..|+.++
T Consensus 80 aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 80 AERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444444444555555554444443
No 122
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=68.26 E-value=1.7 Score=44.70 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=19.0
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.|+ ++.++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 45566788764 56679999999885
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.10 E-value=0.95 Score=48.94 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...+|-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788899999999988
No 124
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=67.99 E-value=1.3 Score=41.62 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..|+-||++|+|||+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 4456888999999999876
No 125
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.96 E-value=1.9 Score=46.04 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.5
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446999999999999877
No 126
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=67.62 E-value=2 Score=43.82 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=19.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| ++..++||||||.+.
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556677877 566789999999874
No 127
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.23 E-value=1.6 Score=45.30 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.8
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
.....|+-||++|+|||+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34557999999999999987
No 128
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=67.10 E-value=2.1 Score=44.43 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=19.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4556677866 566789999999875
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.01 E-value=1.8 Score=40.86 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.0
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 55667899999999999876
No 130
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.65 E-value=2 Score=46.77 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=20.7
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+...+..|....++-||++|+|||+++
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 34444444564344899999999999887
No 131
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.45 E-value=1.9 Score=46.73 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=16.9
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+....|+-||++|+|||+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 44567999999999999877
No 132
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=65.76 E-value=0.63 Score=52.04 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.9
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999877
No 133
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.73 E-value=95 Score=35.16 Aligned_cols=35 Identities=9% Similarity=-0.078 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002261 626 VQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (946)
Q Consensus 626 v~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~ 660 (946)
.++++.++++.++.++.+...++++..+.++-.+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 34456666666666666666666666665554443
No 134
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.53 E-value=3.1 Score=47.31 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=45.0
Q ss_pred EEeceEecCCCCCccccccccchhhHH-hhhc--C--CCeeEEEeccCCCCcccccc--------------CCCCCCCCc
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTMG--------------TGLREGFQT 108 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G--~n~ti~ayGqtgSGKT~Tm~--------------g~~~~~~~~ 108 (946)
.+||.|-|-+. .-+.+.+.+..|+.. .+|. | .--.|+-||++|+|||++.- |+.-.....
T Consensus 206 vt~~DIgGl~~-~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 206 VTYSDVGGCKD-QIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp CCCSSCTTCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCHHHhccHHH-HHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 45666654322 123344444444432 3343 3 24579999999999997650 110012345
Q ss_pred ccHHHHHHHHHHHHHhc
Q 002261 109 GLIPQVMNALFNKIETL 125 (946)
Q Consensus 109 Glipr~~~~lF~~i~~~ 125 (946)
|--.+.++.+|......
T Consensus 285 Gesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 285 GEGARMVRELFEMARTK 301 (467)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 77788999999887664
No 135
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.13 E-value=1.5 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=19.0
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556677876 467789999999874
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.02 E-value=20 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002261 533 FGKKIMELEEEKRIVQQERDRL 554 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L 554 (946)
++..|.+.+.+|..|+.+.+++
T Consensus 45 LEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3355666666666666555554
No 137
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.90 E-value=3.9 Score=46.04 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=46.0
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhc--C--CCeeEEEeccCCCCccccc--------------cCCCCCCCC
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~--G--~n~ti~ayGqtgSGKT~Tm--------------~g~~~~~~~ 107 (946)
.-+||.|-|-+. .-+.+.+.+..|+.. .+|. | +--.|+-||++|+|||++. -|+.--...
T Consensus 178 ~v~~~DIgGld~-~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 178 TESYSDIGGLES-QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCGGGTCSCHH-HHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCcceecCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 345666554322 123344444444432 2333 3 2357999999999999765 111002234
Q ss_pred cccHHHHHHHHHHHHHhcc
Q 002261 108 TGLIPQVMNALFNKIETLR 126 (946)
Q Consensus 108 ~Glipr~~~~lF~~i~~~~ 126 (946)
.|--.+.++.+|.......
T Consensus 257 vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHhcC
Confidence 6888899999998876643
No 138
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.78 E-value=2.5 Score=46.91 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=21.0
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..++.|.| ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 35667788888 678899999999874
No 139
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.77 E-value=1.2e+02 Score=34.22 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002261 643 KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (946)
Q Consensus 643 ~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lk 693 (946)
...+++++.|-.++-.+++.++.+|.. +++++.|.++|+|
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEGEITTLNH-----------KLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhc
Confidence 344555555555555555666666553 5556777777665
No 140
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=63.57 E-value=61 Score=27.05 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 002261 604 KHKSDEAAKRLQAEIQSIKAQKVQ 627 (946)
Q Consensus 604 k~k~e~~~~~L~~ei~~lk~~kv~ 627 (946)
++++-+.+...+.||+.|++....
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~E 36 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEED 36 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444455555555544333
No 141
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.41 E-value=76 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 002261 607 SDEAAKRLQAEIQ 619 (946)
Q Consensus 607 ~e~~~~~L~~ei~ 619 (946)
.+.+...|+.+|.
T Consensus 81 ~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 81 IEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 142
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.27 E-value=2.1 Score=44.43 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.8
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999887
No 143
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=62.98 E-value=2.7 Score=48.00 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.+..+++.|+||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 345566776677899999999999773
No 144
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=62.85 E-value=1.8e+02 Score=32.72 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHH
Q 002261 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSDE 609 (946)
Q Consensus 531 ~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~-~~~l~k~k~k~e~ 609 (946)
..|+.++...+.++.+.++.... .+..|++++.+...+-..++.+... .++=...|.+.+.
T Consensus 5 a~yq~~la~yq~elarvqkana~------------------aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANAD------------------AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777766655544 3455666666666655545443333 2234444666677
Q ss_pred HHHHHHHHHHHHHHH
Q 002261 610 AAKRLQAEIQSIKAQ 624 (946)
Q Consensus 610 ~~~~L~~ei~~lk~~ 624 (946)
++..++.++..-++.
T Consensus 67 ~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 67 KLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666666555
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.82 E-value=1 Score=49.63 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=28.2
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhcCC---CeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY---NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (946)
..+|+.|.+.+.. -..+...+..|+-. .+|.+. ...|+-||++|+|||++.
T Consensus 47 ~~~~~di~G~~~~-~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGA-KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGH-HHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHH-HHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 4567777753221 22333333233221 233332 245899999999999877
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.58 E-value=2.8 Score=44.67 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=24.2
Q ss_pred ccccchhhHHhhhcCC-----CeeEEEeccCCCCccccc
Q 002261 65 FGECVAPLVDGLFQGY-----NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 65 ~~~~~~~lv~~~l~G~-----n~ti~ayGqtgSGKT~Tm 98 (946)
+...+..++..++.|+ ...|+..|++|||||+..
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3445666666666554 346888999999999875
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=62.46 E-value=2.8 Score=44.18 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-||++|||||+++
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3899999999999987
No 148
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.26 E-value=2.4 Score=49.25 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=16.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.+ |+..|+||||||+||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5665 677899999999998
No 149
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=61.99 E-value=2.7 Score=43.32 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=19.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.+ ++.+|+||+|||++.
T Consensus 101 ai~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCCCHHHHH
Confidence 4556667765 677789999999987
No 150
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.48 E-value=70 Score=26.74 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 002261 850 YMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASS 911 (946)
Q Consensus 850 ~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~ 911 (946)
..|..+-.....+.+.+-.+.+++.+..+.+.+++.+..+...|+.++..+...+..+.-++
T Consensus 16 e~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 16 EKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666778888888889999999999999999999999999999999998887765544
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=61.45 E-value=2.5 Score=46.57 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=20.8
Q ss_pred hhhHHhhhcCCC-e--eEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYN-A--TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n-~--ti~ayGqtgSGKT~Tm 98 (946)
...+..++.|.. . +|+-||++|+|||+++
T Consensus 30 ~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 30 DILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp HHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 334455554543 4 6899999999999987
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.37 E-value=1.9 Score=47.29 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=16.9
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568899999999999887
No 153
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=60.91 E-value=3.2 Score=45.98 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=21.8
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456677775666788899999999875
No 154
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.62 E-value=1 Score=51.43 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-||++|+|||++.
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999887
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.52 E-value=2.6 Score=45.93 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=18.9
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+-..+-.|--..++-||++|+|||+++
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 333344554333788999999999998
No 156
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=59.99 E-value=3.2 Score=45.48 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=21.1
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.|-+..++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 3456667774456788899999999875
No 157
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.97 E-value=3.1 Score=46.20 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=19.7
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4566778877 677889999999765
No 158
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=59.39 E-value=64 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHH
Q 002261 864 EKDTEIKEIKEQLNDLVALLKQ-SEAQRKE-LVKQQRMREQAVTIA 907 (946)
Q Consensus 864 ~~~~~l~e~~~~~~~l~~~~r~-~e~~~~~-l~~~~~~~~~~~~~~ 907 (946)
+.-..++...+.+..+...-.+ +...... |..+...+.+|||+|
T Consensus 17 el~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~~LK~QAVNKL 62 (71)
T 1s1c_X 17 ELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTERTLKTQAVNKL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333355555555554422222 2222222 889999999999985
No 159
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.85 E-value=2.5 Score=44.96 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.8
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457899999999999887
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.84 E-value=2.8 Score=42.08 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=15.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-||++|+|||+++
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999887
No 161
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.64 E-value=3.4 Score=45.45 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=20.5
Q ss_pred hhHHhhhcC-CCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..++.| ...+|+-||++|+|||+++
T Consensus 34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344444444 3458999999999999887
No 162
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=58.60 E-value=3.3 Score=49.58 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=18.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..++..-.. .+..||+|||||+|+
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHH
Confidence 45556544334 456799999999998
No 163
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=58.36 E-value=3.2 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=19.4
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4566677877 677889999999765
No 164
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.18 E-value=3.5 Score=44.07 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=19.0
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 4556667876 566789999999876
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.17 E-value=3.7 Score=41.80 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=23.3
Q ss_pred chhhHHhhhcC-C--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQG-Y--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G-~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++.| + ...+.-+|++|||||+.+
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 45678888854 3 456788999999999987
No 166
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=57.78 E-value=30 Score=40.55 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (946)
Q Consensus 574 ~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~L 653 (946)
.+++.++.+++.+ .++.+....+....-..++++.+..+.+-..|.+.... +.++..+.+........|-.+|
T Consensus 338 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~----~e~~~~~l~~~~~~~~~e~~~l 410 (575)
T 2i1j_A 338 QEYQDRLRQMQEE---MERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE----LQAMMQRLEETKNMEAAERQKL 410 (575)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHC--------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444444 33443443333333445555555555554444433222 2344455555555556666666
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 002261 654 KKEGRKNEFERHKLEALNQRQ 674 (946)
Q Consensus 654 kk~~rk~~~e~~kle~~~~~q 674 (946)
..+-+..+..+.+|.....+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~ 431 (575)
T 2i1j_A 411 EDEIRAKQEEVSRIQQEVELK 431 (575)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777776544433
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.13 E-value=3.1 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=17.6
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
-.|....++-||++|+|||++.
T Consensus 42 ~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 42 KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HHTCCCEEEEESCTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3455445899999999999987
No 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=57.12 E-value=2.8 Score=45.32 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=28.9
Q ss_pred eEEeceEecCCCCCccccccccchhhHH-hhhcCC---CeeEEEeccCCCCccccc
Q 002261 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY---NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 47 ~f~FD~Vf~~~~s~q~~v~~~~~~~lv~-~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (946)
..+||.|.+.+.. -..+...+..|+.. .++.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGA-KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHH-HHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHH-HHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4567877764321 22333333333321 223332 346999999999999876
No 169
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=56.90 E-value=2.7 Score=47.54 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.5
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.-++.+|+||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3567789999999999988
No 170
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=56.78 E-value=5.5 Score=47.78 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=43.1
Q ss_pred EEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCccccccCCCCCCCCcccH----HHHHHHHHHHHH
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI----PQVMNALFNKIE 123 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Gli----pr~~~~lF~~i~ 123 (946)
|.|..+ .|.+. |..- +..++.++-.|... ....|.|||||||||..-......+-|| ......|+..+.
T Consensus 2 ~~~~~~-~~~~~-q~~a----i~~l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~ 74 (664)
T 1c4o_A 2 FRYRGP-SPKGD-QPKA----IAGLVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFR 74 (664)
T ss_dssp CCCCSC-CCCTT-HHHH----HHHHHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCC-ChHH----HHHHHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHH
Confidence 444444 55554 4333 34566777677543 3457999999999994211000001111 123445555555
Q ss_pred hccccceEEEEeeh
Q 002261 124 TLRHQMEFQLHVSF 137 (946)
Q Consensus 124 ~~~~~~~~~v~vS~ 137 (946)
..-+...+....||
T Consensus 75 ~~~~~~~V~~fps~ 88 (664)
T 1c4o_A 75 ELFPENAVEYFISY 88 (664)
T ss_dssp HHCTTSEEEECCCG
T ss_pred HHCCCCeEEEcCch
Confidence 44333456666776
No 171
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=56.60 E-value=3.4 Score=47.01 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=19.7
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.+. +++.|+||||||.+.
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 34567788765 467799999999874
No 172
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=56.54 E-value=2.4 Score=45.22 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999877
No 173
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.19 E-value=2.6e+02 Score=31.61 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 002261 675 KMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 675 ~~vl~rk~eE~~a~~k~Lke~le 697 (946)
..+||.-+++.-.-|+||.-+..
T Consensus 133 IrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444555544444
No 174
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=56.12 E-value=4.1 Score=47.10 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.+..++..|+||||||++.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 456677774556788899999999874
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=55.80 E-value=2.9 Score=44.50 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 454445899999999999887
No 176
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=55.75 E-value=4.1 Score=45.22 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.|+ +..++||||||.+.
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 34556778774 67789999999875
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.29 E-value=4.6 Score=40.60 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=21.3
Q ss_pred hhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
-+.++.++. |+ ...+.-+|++|||||+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 355677775 44 235667899999999887
No 178
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=55.16 E-value=29 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=22.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALA 909 (946)
Q Consensus 861 ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~ 909 (946)
++...+..|..++.++..+ +.++..++.+|+..++.+++
T Consensus 38 e~~~~q~~i~~lE~eL~~~----------r~e~~~ql~EYq~LlnvKl~ 76 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEI----------RDQMQQQLNDYEQLLDVKLA 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555444 55666777777777776544
No 179
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.97 E-value=3e+02 Score=32.10 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+-...|...|.+|+|||+.|
T Consensus 35 ~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 455567788899999999876
No 180
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.53 E-value=3.3 Score=40.14 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+...|++|||||+.+
T Consensus 11 i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999998
No 181
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=54.35 E-value=4.7 Score=40.25 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=22.9
Q ss_pred hhhHHhhhc-CCC--eeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQ-GYN--ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~-G~n--~ti~ayGqtgSGKT~Tm 98 (946)
-+-++.++. |+. ..++.+|++|||||..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 466788886 564 46788999999999887
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.28 E-value=4.2 Score=46.27 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=22.0
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++...+-.|.-.+|+-||++|+|||++.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 44445555566578999999999999877
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.87 E-value=4.2 Score=44.24 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=14.1
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999987
No 184
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=53.55 E-value=91 Score=25.50 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHH
Q 002261 867 TEIKEIKEQLNDLVALLKQ---SEAQRKE-LVKQQRMREQAVTIA 907 (946)
Q Consensus 867 ~~l~e~~~~~~~l~~~~r~---~e~~~~~-l~~~~~~~~~~~~~~ 907 (946)
.+++...+.+..+..+-.+ +...... |..+...+.+|||+|
T Consensus 18 ~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKL 62 (71)
T 1uix_A 18 NKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555544433322 1222222 888899999999975
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.40 E-value=4.6 Score=43.22 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.9
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+....|+-||++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 35567889999999999877
No 186
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.22 E-value=3.3 Score=45.03 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999987
No 187
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.93 E-value=4.5 Score=45.09 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=19.7
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++..++.|.| ++..++||||||.+.
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 34566678875 578899999999843
No 188
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.81 E-value=4.3 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=16.9
Q ss_pred HhhhcCCCeeEEEeccCCCCccccc
Q 002261 74 DGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 74 ~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..|.+.++++ ++||||||.++
T Consensus 192 ~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 192 QSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHhcCCCceEEE-ecCCCChHHHH
Confidence 3333476655444 99999999997
No 189
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=52.58 E-value=5 Score=40.52 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=19.1
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++++++-.|-- +...|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 46666655554 445799999999988
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.35 E-value=3.9 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.2
Q ss_pred hhcCCCeeEEEeccCCCCccccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++.|++.+|...|++|+|||+.|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58899999999999999999876
No 191
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=51.96 E-value=2.6 Score=45.60 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=18.9
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+...+..| ..|+-||++|+|||+.+
T Consensus 38 ~l~~~l~~~--~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTG--GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHT--CCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcC--CeEEEECCCCCcHHHHH
Confidence 334444444 36788999999999887
No 192
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=51.52 E-value=3.6 Score=43.41 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=18.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.++ +..++||||||.+.
T Consensus 121 ai~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 121 AVFEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHHHhcCCe--EEEcCCCCCcHHHH
Confidence 35556666554 33899999999887
No 193
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.39 E-value=25 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 002261 607 SDEAAKRLQAEIQSIK 622 (946)
Q Consensus 607 ~e~~~~~L~~ei~~lk 622 (946)
.+.++..|..++...+
T Consensus 44 ~~~e~~~L~~~l~eE~ 59 (135)
T 2e7s_A 44 RDDEVKRLREDIAKEN 59 (135)
T ss_dssp HHHHHHTHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333433333333
No 194
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=51.37 E-value=5.3 Score=43.77 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.2
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4566777866 566789999999875
No 195
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.22 E-value=4.6 Score=41.93 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=21.9
Q ss_pred ccccchhhHHhhhcCCC-----eeEEEeccCCCCccccc
Q 002261 65 FGECVAPLVDGLFQGYN-----ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 65 ~~~~~~~lv~~~l~G~n-----~ti~ayGqtgSGKT~Tm 98 (946)
|..+...++..++.|+. ..|+..|++|||||+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 33444444555554433 46888999999999864
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.09 E-value=5.9 Score=39.82 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=22.5
Q ss_pred chhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++. |+ ...+.-+|++|||||+.+
T Consensus 10 G~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 10 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 3466777774 54 346778899999999987
No 197
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.92 E-value=92 Score=35.21 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002261 534 GKKIMELEEEKRIVQQERDRLLA 556 (946)
Q Consensus 534 e~ki~~Le~ei~~l~kEr~~L~~ 556 (946)
...|++|..++..+++-+.....
T Consensus 63 tkrINELKnqLEdlsKnsKdseq 85 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHS 85 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHH
Confidence 35556666666555544444433
No 198
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.86 E-value=1.3e+02 Score=26.34 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 578 LKLKALEAQILELKKK 593 (946)
Q Consensus 578 ~kl~~lE~~~~~Lk~~ 593 (946)
+...+.|.++..|.++
T Consensus 79 k~~~~AE~evasLnRr 94 (101)
T 3u59_A 79 KKATDAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 199
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=50.32 E-value=6.7 Score=46.30 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=20.9
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+|..++.|.| +++.++||||||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 45677788988 577889999999864
No 200
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.79 E-value=4.9 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=19.5
Q ss_pred HhhhcC---CCeeEEE--eccCCCCccccc
Q 002261 74 DGLFQG---YNATVLA--YGQTGSGKTYTM 98 (946)
Q Consensus 74 ~~~l~G---~n~ti~a--yGqtgSGKT~Tm 98 (946)
..+..| -...++. ||++|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 4567888 999999999887
No 201
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.72 E-value=93 Score=27.28 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 533 FGKKIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
+..+|..|+.+...|..+++.|+.++..
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888776
No 202
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=49.59 E-value=6.6 Score=45.76 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|-+..|++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 455666665567789999999999875
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.48 E-value=5.9 Score=45.33 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.6
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..+-.+....++-||++|+|||+..
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 34455444566667889999999999987
No 204
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=49.29 E-value=1.5e+02 Score=26.84 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHH
Q 002261 654 KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHEL 733 (946)
Q Consensus 654 kk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~El 733 (946)
.+.-.|.+..+.+-. ..+.|..+=-||..|..|-.|+---..+. .+ .-.-.|..||
T Consensus 73 QRn~~K~~~~Lkrn~-~qQnQQSlDiRKLrELEADLKEKDsMVe~------LT-----------------~TiG~LrKEL 128 (167)
T 4gkw_A 73 QRNLEKADQLLKRNS-QQQNQQSLDMRKLGELEADLKEKDSMVES------LT-----------------ETIGILRKEL 128 (167)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTHHHHHTHHHHHHHHHH------HH-----------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHhhh-HHHhHhhhhHHHHHHHHhHHhhhhHHHHH------HH-----------------HHHHHHHHHH
Confidence 344444445555544 45566778889999999877776655551 11 1223344444
Q ss_pred HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 734 EVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 734 e~~-~~~~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
+-- ..+.+.-+.++.+.-++..+...|+.-+.
T Consensus 129 EdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 129 ENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 443 36667778889898888888888776544
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.14 E-value=5.4 Score=42.44 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=16.9
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
-.|.-..++-||++|+|||++.
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3444334899999999999887
No 206
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.12 E-value=35 Score=31.63 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=27.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002261 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (946)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle 668 (946)
...|.....+..||++|.+..=.--++|=... |......++.+.+|+.+....+..+..++
T Consensus 63 ~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~e~ll~~lq 123 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDLTASLFDEANNLVADA---RMEKYAIEILNKRLTEQLREKDMLLDTLT 123 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHTTTHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554333333333222 33344455555555555555555444444
No 207
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.11 E-value=5.2 Score=40.07 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|...|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 34666799999999987
No 208
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=49.09 E-value=5.9 Score=44.65 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=18.9
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3455667866 577889999999875
No 209
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=48.95 E-value=4.5 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=17.0
Q ss_pred hhcCCCeeEEEeccCCCCccccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++.|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67899999999999999999877
No 210
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.95 E-value=4.5 Score=39.70 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999987
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=48.92 E-value=6 Score=40.23 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=20.5
Q ss_pred hhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
+-+|.++. |+ ...++-+|++|||||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 44577764 33 346788999999999985
No 212
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=48.84 E-value=4.6 Score=44.33 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.5
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457888999999999876
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.78 E-value=5.2 Score=42.87 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=17.1
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45778999999999999765
No 214
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.71 E-value=6.4 Score=39.34 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=18.8
Q ss_pred hhhHHhhhc--CCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~--G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+++.+.. +-...|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33345666799999999877
No 215
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.62 E-value=1.2e+02 Score=25.47 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002261 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (946)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~ 660 (946)
+.-|+-||.++|.....| .++....+.....+.+|+.+|+.+..--
T Consensus 22 I~lLqmEieELKekN~~L----~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSL----SQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444555666666665554 4444555555555666666666554433
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=48.59 E-value=4.7 Score=39.39 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999877
No 217
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=48.57 E-value=4.7 Score=44.49 Aligned_cols=18 Identities=44% Similarity=0.672 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999876
No 218
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.48 E-value=1.4e+02 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=7.7
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 002261 602 KQKHKSDEAAKRLQAEIQ 619 (946)
Q Consensus 602 k~k~k~e~~~~~L~~ei~ 619 (946)
+.....|..+..|+-.|+
T Consensus 79 k~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 79 ENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 219
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.43 E-value=4.8 Score=39.83 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999887
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=48.10 E-value=5.3 Score=37.94 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999865
No 221
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=48.03 E-value=6 Score=42.74 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=18.4
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.. .++..++||||||.+.
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 3455566632 3567799999999875
No 222
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=48.01 E-value=6.7 Score=45.16 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.9
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999876
No 223
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=47.92 E-value=3.9 Score=44.89 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=19.2
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556677876 567789999999875
No 224
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.39 E-value=6.8 Score=45.25 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4566678877 567789999999875
No 225
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.37 E-value=1.5e+02 Score=26.26 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002261 796 ERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQ 875 (946)
Q Consensus 796 ~qi~~Le~~~~~~~~~l~~l~~~~~e~~~~~~~~~~~~~w~~~~sl~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~ 875 (946)
.+|..|...+..++..+.+++..+.++..+.. ++...-+.+.-++.+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~---------------------------------q~~~~lE~I~vLkaQ 70 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAE---------------------------------QHKIVMETVPVLKAQ 70 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 36788888888888777777766666666543 111111234445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhc
Q 002261 876 LNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (946)
Q Consensus 876 ~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~ 913 (946)
..-..+....-...++.+..+.+.+.+.+..|.++.+.
T Consensus 71 v~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 71 ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 55555555445555566777777777777777777654
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.34 E-value=6.3 Score=39.20 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=20.2
Q ss_pred chhhHHhhhc---CCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ---GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~---G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..+++.+.. +-...|...|++|||||+++
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 3445555543 23356777899999999877
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.16 E-value=4.8 Score=40.10 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999988
No 228
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.94 E-value=39 Score=32.97 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002261 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKV 626 (946)
Q Consensus 570 ~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv 626 (946)
++|.+++..+..++..+ +..+..+...|.....=-+.+++.|..||.+++.+..
T Consensus 77 ~~I~~e~r~~~~~Lr~q---l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 77 QKIYDDYYTQTSALRQQ---LISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 2222233333433333445566666666666655433
No 229
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.78 E-value=5 Score=44.61 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=14.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
|..++..|+||||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 344567899999999998
No 230
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.45 E-value=1e+02 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002261 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (946)
Q Consensus 574 ~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk 622 (946)
.+....+.+|+.+|..|......+. +++.+.-.....|..++..+.
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r---~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQ---HLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444433 123333333445555555553
No 231
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.25 E-value=1.3e+02 Score=26.34 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHF------------GKKIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 497 q~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~------------e~ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
...|.+.|.+|+.+|+.......-++ .|..-| +.+|.+....|..|..+.-.+..-+..
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~-----Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALK-----KMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH-----HHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777776665544433322 233333 345555555555555555555444443
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.16 E-value=4.3 Score=50.28 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=22.4
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..++..+..+....++-||++|+|||+.+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 344555555566566788999999999988
No 233
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=45.80 E-value=5.4 Score=47.31 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 356788999999999998
No 234
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=45.55 E-value=1e+02 Score=26.52 Aligned_cols=61 Identities=8% Similarity=-0.031 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 376 LISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (946)
Q Consensus 376 ~~~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~e~~~~~~ 436 (946)
........|+.++..|+.++..-...........++.++..|.++.+.+...|...+..+.
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999854332233455677888888898888888888887777653
No 235
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=45.54 E-value=7.1 Score=46.42 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..++. +..++..|++|||||+|+
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHH
Confidence 3445553 345678899999999997
No 236
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=45.41 E-value=5.3 Score=40.95 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..||..|..|+||||+|
T Consensus 7 l~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 56899999999999998
No 237
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=45.35 E-value=7.7 Score=44.70 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=19.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..++.|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 4556678876 466789999999875
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=45.22 E-value=5.6 Score=38.86 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|++|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999987
No 239
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.09 E-value=5.6 Score=41.92 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=16.0
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
|+-+|...|++|||||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4557788899999999887
No 240
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=45.08 E-value=7.3 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=19.1
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..++.|.+ ++..|+||||||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 4556667754 667799999999986
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.02 E-value=5.4 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=13.1
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999987
No 242
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=44.60 E-value=7 Score=44.50 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++..+..| +..++..|+.|||||+++
T Consensus 37 ~~~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 37 VMKAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred HHHHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 33333333 347889999999999887
No 243
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.33 E-value=1.7e+02 Score=26.08 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 002261 610 AAKRLQAEIQSIKAQ 624 (946)
Q Consensus 610 ~~~~L~~ei~~lk~~ 624 (946)
-+..|+.-+...+++
T Consensus 54 TV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 54 TVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 244
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.25 E-value=83 Score=28.62 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002261 529 LRHHFGKKIMELEEEKRIVQQ 549 (946)
Q Consensus 529 ~~~~~e~ki~~Le~ei~~l~k 549 (946)
...+|...|.+|+.+......
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666554443
No 245
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.77 E-value=2.2e+02 Score=27.01 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 002261 677 VLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 677 vl~rk~eE~~a~~k~Lke~le 697 (946)
.|++...|....+..|+++|.
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554443
No 246
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=43.61 E-value=7 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.0
Q ss_pred hcCCCeeEEEeccCCCCccccc
Q 002261 77 FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+...++.++..|..|||||+|+
T Consensus 18 v~~~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 18 VAAPRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp HTCCSSCEEEEECTTSCHHHHH
T ss_pred HhCCCCCEEEEECCCCCHHHHH
Confidence 3344667889999999999998
No 247
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=43.57 E-value=6.4 Score=45.44 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=19.7
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..++.|. .|+-||++|+|||+..
T Consensus 32 ~~l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCC--eeEeecCchHHHHHHH
Confidence 33444455554 5788999999999986
No 248
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.38 E-value=7 Score=41.94 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999998
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.13 E-value=6.1 Score=48.24 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=31.7
Q ss_pred hhhcCCC----eeEEEeccCCCCccccc---cCCCC-----------CCCCcccHHHHHHHHHHHHHh
Q 002261 75 GLFQGYN----ATVLAYGQTGSGKTYTM---GTGLR-----------EGFQTGLIPQVMNALFNKIET 124 (946)
Q Consensus 75 ~~l~G~n----~ti~ayGqtgSGKT~Tm---~g~~~-----------~~~~~Glipr~~~~lF~~i~~ 124 (946)
.+|.++. ..|+-||++|+|||+.. .+..+ .+...|-....++.+|.....
T Consensus 228 ~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295 (806)
T ss_dssp GGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHH
Confidence 3455554 46999999999999765 11111 012346667777888876644
No 250
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.02 E-value=3.6e+02 Score=29.29 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002261 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQ 679 (946)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~ 679 (946)
|.++-+.+...|..|+..|.++++.......-++.-.+..+.- ..+ -...++-+..+-.+-+++-..||
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~-------~~q----~~dndn~~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD-------FAK----ANNNDNTFKQINEDLRSRIEILR 126 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHh----hccchHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666555554433333322222221 111 11233334444444455667777
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 002261 680 RKTEEAAIATKRLKELLEA 698 (946)
Q Consensus 680 rk~eE~~a~~k~Lke~le~ 698 (946)
+++.+-...++.|+..++.
T Consensus 127 ~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 127 RKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 7777777777777777663
No 251
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.89 E-value=8.4 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=20.6
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+|..++.|.| ++..++||||||.+.
T Consensus 14 ~~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 14 EVAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 35666777876 577899999999887
No 252
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.89 E-value=83 Score=25.30 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 378 SSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELH 429 (946)
Q Consensus 378 ~~ei~~Lr~ei~~Lk~eL~~~~~~~~~~e~q~l~~ki~~Le~e~~~L~~eL~ 429 (946)
......|+.++..|+.++..-...........++.++..|.++...+...+.
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677889999999999985422222334555667777777777776666654
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=42.57 E-value=7.2 Score=37.43 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999999864
No 254
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.47 E-value=33 Score=40.17 Aligned_cols=49 Identities=29% Similarity=0.300 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (946)
Q Consensus 503 el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~ 556 (946)
+..+|...|...++++.... .--..+++....|+++....+.|...|..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~l~e~~~~~~~e~~~l~~ 384 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQ-----ANLLEAQDMILRLEEQLRQLQAAKEELEQ 384 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHC--------------------
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444322 11122334455555555555555544443
No 255
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.38 E-value=1.8e+02 Score=25.57 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (946)
Q Consensus 580 l~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~~~~k 633 (946)
|.++|.. +++.--..++|.-.|..+-=++..|.+.+.++....+++.+..+
T Consensus 4 L~EvEEK---yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~ 54 (103)
T 4h22_A 4 LAEVEEK---YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYE 54 (103)
T ss_dssp ----CCT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 66666677778888888888888888888888888666644444
No 256
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=42.32 E-value=10 Score=44.53 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=20.5
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 456667555556788899999999875
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=42.21 E-value=7.3 Score=37.79 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999765
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=42.00 E-value=7.8 Score=37.27 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999765
No 259
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=41.89 E-value=7.4 Score=42.41 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...++-||++|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999987
No 260
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.80 E-value=2.6e+02 Score=31.27 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=8.7
Q ss_pred EcCCHHHHHHHHHh
Q 002261 194 AVNTLQEMAACLEQ 207 (946)
Q Consensus 194 ~v~s~~e~~~~l~~ 207 (946)
...|++|+..+...
T Consensus 139 ~P~Twdel~~~a~~ 152 (471)
T 3mq9_A 139 PPKTWEEIPALDKE 152 (471)
T ss_dssp CCSBGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 34677777766544
No 261
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=41.68 E-value=6.9 Score=41.96 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=14.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667799999999998
No 262
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=41.64 E-value=6.6 Score=42.67 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=15.1
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|. .|...|+||||||+++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 454 4566799999999988
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=41.58 E-value=7 Score=38.57 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999876
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.94 E-value=8.1 Score=39.21 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999887
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=40.92 E-value=6.6 Score=43.22 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=14.7
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.+ |.-.|+||||||+++
T Consensus 174 ~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHH
Confidence 4554 445599999999988
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=40.85 E-value=7.2 Score=38.08 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999987
No 267
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.74 E-value=2e+02 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 856 AETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902 (946)
Q Consensus 856 ~~~~~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~ 902 (946)
.++.......+.++++++.++..|...|++...+.+.|..+.+....
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 33333333335557777777777777777766666666655554433
No 268
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=40.71 E-value=7.5 Score=39.60 Aligned_cols=17 Identities=53% Similarity=0.610 Sum_probs=14.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..+.-+|++|||||+++
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 35666899999999987
No 269
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.59 E-value=7.8 Score=44.85 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.8
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999987
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=40.46 E-value=6.9 Score=48.08 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=28.2
Q ss_pred eeEEEeccCCCCccccc---cCCCC-----------CCCCcccHHHHHHHHHHHHHh
Q 002261 82 ATVLAYGQTGSGKTYTM---GTGLR-----------EGFQTGLIPQVMNALFNKIET 124 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm---~g~~~-----------~~~~~Glipr~~~~lF~~i~~ 124 (946)
..|+-||++|||||+.+ .|-.+ .....|-....+..+|+....
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHh
Confidence 46899999999999876 11110 112346666777788877654
No 271
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=39.86 E-value=8.8 Score=40.84 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.2
Q ss_pred CCCeeEEEeccCCCCccccc
Q 002261 79 GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (946)
+-...|.-.|++|||||++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33445667799999999876
No 272
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=39.76 E-value=7.7 Score=38.72 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
++.-.|++|||||+++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999987
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=39.74 E-value=8 Score=37.40 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 5788999999999866
No 274
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.64 E-value=30 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 537 IMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
|++||+++..|-.++..|..+...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 555666666666555555555433
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=39.52 E-value=6.8 Score=40.05 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-||++|||||..+
T Consensus 13 ~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAEL 29 (223)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 46778899999999887
No 276
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=39.52 E-value=9.8 Score=36.42 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=21.8
Q ss_pred hhhHHhhhc-CCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~-G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..+|. .....|+..|.+|+|||..+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 334455565 56678899999999999876
No 277
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=39.48 E-value=9 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=18.8
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..++.|.|+ ++.++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 5566777664 67889999999985
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=39.47 E-value=7.4 Score=39.37 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999987
No 279
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.39 E-value=1.2e+02 Score=22.69 Aligned_cols=44 Identities=32% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHH
Q 002261 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQ 586 (946)
Q Consensus 532 ~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~ 586 (946)
.+++++..|+..+..|+---.+|+.++.+ ...||+ +|+..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s-------sq~KlK----qRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA-------TQMKMK----QRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHhc
No 280
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=39.28 E-value=11 Score=45.29 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=19.2
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+|..++.|.| ++..++||||||...
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Confidence 4556677877 467789999999865
No 281
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=39.28 E-value=1.2e+02 Score=25.00 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHH
Q 002261 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQIL 588 (946)
Q Consensus 533 ~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~ 588 (946)
+++++..|+..+..|+---.+|+.++.+. ..||+ +|+..||.++.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss-------Q~KLK----qRit~LE~~~~ 49 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM-------QQKLK----QRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHHHHHHhc
Confidence 45777888888888888888888877763 34554 56777777644
No 282
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=39.07 E-value=2.2e+02 Score=25.79 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002261 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (946)
Q Consensus 499 ~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~ 562 (946)
+|+..+..++++++.-..++..+. .|-..-+.++.+|.......++|...|.+++..+.
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVg-----kML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVG-----NMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 445555566666665555554433 33334457888999999999999999988877654
No 283
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.97 E-value=11 Score=45.90 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=14.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-||+||+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999877
No 284
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=38.95 E-value=10 Score=42.34 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=18.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.| .++..++||+|||.+.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHH
Confidence 45667777 4566789999999887
No 285
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.82 E-value=61 Score=26.53 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 002261 570 QKMQDGHTLKLKALEAQILELKKK 593 (946)
Q Consensus 570 ~Kl~~~~~~kl~~lE~~~~~Lk~~ 593 (946)
...++..+..+.+||.++.+|...
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888887766653
No 286
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.75 E-value=4.7e+02 Score=29.42 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=47.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCC---CCcchHHHHHHHH---HHHHHHH-hHHHHHHHHHH
Q 002261 676 MVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT---GQSNEKSLQKWLE---HELEVSA-NVHEVRFKYEK 748 (946)
Q Consensus 676 ~vl~rk~eE~~a~~k~Lke~le~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~---~Ele~~~-~~~e~~~~~e~ 748 (946)
.|+.-.-.++.++++.|.+.+.....|-|..-..... ..+. +-.++...+..|. --.+.+. ++..+...|.-
T Consensus 349 ~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~-Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~ 427 (551)
T 2b5u_A 349 QVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAG-GHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSS 427 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhc-cchhhhhccchhhhhhhhhhhHHHHHHHHhhcccchhhhhhh
Confidence 5555555677899999999998777776533111000 0000 0001111111111 1111222 44455556677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 002261 749 QSQVQAALADELTILKQVDQLS 770 (946)
Q Consensus 749 l~e~R~~l~~el~~l~~~~e~~ 770 (946)
-++.|++-+.+-...+.+++.+
T Consensus 428 ~me~Rkq~e~k~k~ae~kl~~e 449 (551)
T 2b5u_A 428 AMESRKKKEDKKRSAENNLNDE 449 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccchhhhhhhhhhccchh
Confidence 7788877777666666666554
No 287
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=38.75 E-value=8.2 Score=37.34 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
..+-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999876
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.74 E-value=11 Score=37.39 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.4
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+..|++|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445667799999999875
No 289
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=38.74 E-value=9 Score=36.26 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467899999999877
No 290
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=38.62 E-value=13 Score=42.11 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=14.9
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45899999999999875
No 291
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.52 E-value=10 Score=46.41 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=17.6
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..++. +..++..|++|||||+|+
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHH
Confidence 444443 334678999999999998
No 292
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=38.46 E-value=8 Score=38.35 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999998
No 293
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=38.32 E-value=2.3e+02 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002261 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (946)
Q Consensus 577 ~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ 616 (946)
+.++..||.++..|.++ +.+++.+.+...|..-..|..
T Consensus 8 ~~~l~~Leae~q~L~~~--E~qry~~eka~AE~A~~~La~ 45 (119)
T 3etw_A 8 VGELQALDAEYQNLANQ--EEARFNEERAQADAARQALAQ 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776555543 333455555444444444433
No 294
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.29 E-value=2.1e+02 Score=25.16 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
.++..|...+..+..+...+...+..+
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555554444
No 295
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=38.14 E-value=11 Score=44.30 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=19.3
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..|..++. +..++..|+.|||||+|+
T Consensus 196 ~Av~~~~~--~~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 196 SVLDQLAG--HRLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp HHHHHHTT--CSEEEEECCTTSCHHHHH
T ss_pred HHHHHHHh--CCEEEEEcCCCCCHHHHH
Confidence 34555554 356677899999999998
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.12 E-value=9 Score=40.89 Aligned_cols=17 Identities=41% Similarity=0.769 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|...|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999998
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=38.11 E-value=9.8 Score=36.83 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-.|++|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999765
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.11 E-value=8.5 Score=39.53 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999887
No 299
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=38.05 E-value=7.8 Score=38.14 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++-||+.|||||+.+
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999988
No 300
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.91 E-value=11 Score=45.70 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.8
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..+..+....|+-||++|+|||...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 34555555566667899999999999876
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.32 E-value=9.6 Score=39.54 Aligned_cols=16 Identities=50% Similarity=0.522 Sum_probs=13.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+.-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999998743
No 302
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=37.27 E-value=12 Score=47.06 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=19.2
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCcccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYT 97 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~T 97 (946)
.+|..++.|.+ ++..|+||||||.+
T Consensus 46 ~aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 46 EAVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHHcCCC--EEEEECCCCcHHHH
Confidence 34566777754 67899999999965
No 303
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=37.11 E-value=11 Score=45.98 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=17.7
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..++.+ ..++..|++|||||+|+
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHH
Confidence 4444432 35678899999999998
No 304
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.01 E-value=35 Score=23.40 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 536 KIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 536 ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
+|++||+++..|-.++..|..+...
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3556666666666666665555443
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=36.98 E-value=9.6 Score=36.41 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=14.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-.|+.|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999876
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=36.91 E-value=10 Score=37.51 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999875
No 307
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=36.74 E-value=10 Score=45.48 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.0
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
.++.++..|..|||||+||
T Consensus 14 ~~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CSSEEEECCCTTSCHHHHH
T ss_pred CCCCEEEEeCCCCChHHHH
Confidence 4677889999999999999
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=36.73 E-value=9.9 Score=38.17 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=16.6
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.-+...|+-.|+||||||.+.
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHH
T ss_pred EECCEEEEEECCCCCCHHHHH
Confidence 445567888999999998765
No 309
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=36.58 E-value=9.6 Score=46.49 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=20.8
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..+..++-.|....++..|+||||||.+.
T Consensus 378 ~~I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 378 QEIRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHHHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 33444444556567889999999999876
No 310
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.51 E-value=1.1e+02 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=12.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002261 599 ELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 599 ~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
+|.++|.+++.++.....+|..+...
T Consensus 41 qL~~LKkkl~~el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 41 QLAALKKHKENEISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544455444444
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=36.48 E-value=12 Score=46.14 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=15.5
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 312
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=36.44 E-value=8.7 Score=44.28 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999887
No 313
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.37 E-value=4.7e+02 Score=29.38 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 002261 507 LNKRLEQKESEM 518 (946)
Q Consensus 507 L~~~Le~kE~~~ 518 (946)
++..|++++..+
T Consensus 98 V~~~LqeLe~~l 109 (464)
T 1m1j_B 98 VKPVLRDLKDRV 109 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHhHHHHHHHHH
Confidence 334444443333
No 314
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=36.35 E-value=9.4 Score=42.01 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=14.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5667799999999998
No 315
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.21 E-value=11 Score=45.80 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=21.9
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
..++..+.......++-||++|+|||+.+
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 34555555556667889999999999987
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=36.02 E-value=9.7 Score=36.53 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+.|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999999876
No 317
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.01 E-value=9.4 Score=41.43 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|.-.|++|||||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666799999999998
No 318
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.92 E-value=2.8e+02 Score=26.08 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 496 WQNTMDKELNELNKRLEQKESEMKLFGDI--DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEI 558 (946)
Q Consensus 496 ~q~~l~~el~~L~~~Le~kE~~~~~~~k~--~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l 558 (946)
....|+.++..+...|..++.++..-.+. ........+.-.++.++++..+|+.|.+.|..++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665555432210 0111222233456667777777777776666654
No 319
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.69 E-value=14 Score=45.02 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999877
No 320
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=35.66 E-value=12 Score=39.51 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=21.6
Q ss_pred hhHHhhhcCCC--eeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n--~ti~ayGqtgSGKT~Tm 98 (946)
+.++.+.-|+. ..+..+|++|||||..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 55777776664 35777899999999987
No 321
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=35.53 E-value=13 Score=42.66 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999877
No 322
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=35.49 E-value=9.7 Score=39.90 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.6
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|++..|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999766
No 323
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.46 E-value=15 Score=40.00 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=23.3
Q ss_pred chhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-+-+|.++. |+ ...+..||++|||||..+
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456888886 44 346788999999999876
No 324
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=35.43 E-value=11 Score=35.78 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 325
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=35.29 E-value=10 Score=43.43 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=18.9
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..++.|.+ ++..|+||||||.+.
T Consensus 121 ai~~~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 121 AVFEGLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHHHHSE--EEEECCSTTTHHHHH
T ss_pred HHHHHHhcCC--cEEEeCCCCCHHHHH
Confidence 4556666644 467899999999987
No 326
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.20 E-value=1.6e+02 Score=23.29 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002261 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 571 Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
+.+.....+..+|+.++.+|..+ ...+..++..|+.|+..|+..
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~----------N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKK----------NEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444445566666664444433 344566667777777776654
No 327
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.03 E-value=9.6 Score=38.12 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4577899999999976
No 328
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=34.67 E-value=14 Score=45.23 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.6
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+|..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4566678876 567789999999876
No 329
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.63 E-value=92 Score=22.58 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 530 RHHFGKKIMELEEEKRIVQQERDRLLA 556 (946)
Q Consensus 530 ~~~~e~ki~~Le~ei~~l~kEr~~L~~ 556 (946)
.+.++.+.++|++.+..|+.|..-|..
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344456777777777777777655543
No 330
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.62 E-value=1e+02 Score=25.48 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002261 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEI 618 (946)
Q Consensus 571 Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei 618 (946)
-++...-.++.+|-.+-..|+.+... +...+.+.+.+++.|.+|+
T Consensus 30 vvk~DLI~rvdELt~E~e~l~~El~s---~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 30 IVKNDLIAKVDELTCEKDVLQGELEA---VKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444433322 4444555555555555554
No 331
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=34.54 E-value=8.2 Score=44.79 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=20.0
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+|..++.|.|+ +..++||||||.+.
T Consensus 32 ~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 456777888864 55679999999865
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=34.37 E-value=10 Score=37.66 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998765
No 333
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.27 E-value=5.5e+02 Score=28.91 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKS 607 (946)
Q Consensus 528 ~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~~~~~~~~~~Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~ 607 (946)
..+..|+.++.+...+...++.|...+..+... .+..|++++..-+..+...++. +.+.
T Consensus 27 ~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~-----------aka~Ye~~l~kY~~dlakY~~~----------~AeY 85 (497)
T 3iox_A 27 DAKAAYEAAVAANNAANAALTAENTAIKKRNAD-----------AKADYEAKLAKYQADLAKYQKD----------LADY 85 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 356778899999999888888888877655433 2455666555555554434332 3444
Q ss_pred HHHHHHHHHHHHHHHH
Q 002261 608 DEAAKRLQAEIQSIKA 623 (946)
Q Consensus 608 e~~~~~L~~ei~~lk~ 623 (946)
+.++..++.++...++
T Consensus 86 ~~kl~aYe~~~~~~~k 101 (497)
T 3iox_A 86 PVKLKAYEDEQTSIKA 101 (497)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555544444433
No 334
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=34.26 E-value=15 Score=41.40 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999885
No 335
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.02 E-value=1.1e+02 Score=23.09 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002261 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQ 679 (946)
Q Consensus 645 ~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~ 679 (946)
.+.+|...||++.+..-..+.+|+.+..--+.||+
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 45677889999999999999999977664444443
No 336
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=33.84 E-value=14 Score=46.15 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.7
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+|..++.|.| ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 4566678877 466789999999886
No 337
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.73 E-value=11 Score=43.20 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=14.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|...|++|||||+++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5667799999999998
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.71 E-value=12 Score=36.12 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999865
No 339
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=33.38 E-value=11 Score=37.47 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999887
No 340
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.34 E-value=2.4e+02 Score=24.50 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=7.4
Q ss_pred HHHhhHHHHHHHHHHHH
Q 002261 603 QKHKSDEAAKRLQAEIQ 619 (946)
Q Consensus 603 ~k~k~e~~~~~L~~ei~ 619 (946)
.....|..+..|+--|+
T Consensus 80 ~~~~AE~evasLnRriq 96 (101)
T 3u59_A 80 KATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 341
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=33.32 E-value=11 Score=36.04 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|+.|||||+.+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999987
No 342
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=33.14 E-value=15 Score=41.73 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4577899999999884
No 343
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=33.03 E-value=14 Score=39.86 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
-.|+..|+||||||..-
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36888999999999753
No 344
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=33.02 E-value=14 Score=36.11 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+....|.-.|++|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344556888899999999765
No 345
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=32.97 E-value=12 Score=41.21 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.1
Q ss_pred hhhcCCCeeEEEeccCCCCccccc
Q 002261 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 75 ~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 357899999999999999999776
No 346
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=32.94 E-value=12 Score=38.07 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+.+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999887
No 347
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=32.88 E-value=12 Score=36.44 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999875
No 348
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=32.88 E-value=17 Score=39.74 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=23.1
Q ss_pred chhhHHhhhcC-C--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQG-Y--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G-~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++.| + ...+.-||++|||||..+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44667888854 3 457888999999999876
No 349
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=32.82 E-value=11 Score=38.53 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|++|||||+.|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999999887
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=32.80 E-value=13 Score=39.79 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|++|||||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35777899999999998
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=32.76 E-value=12 Score=36.43 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 352
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=32.71 E-value=13 Score=36.08 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999764
No 353
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=32.49 E-value=14 Score=39.66 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.6
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+.||+.|+|||+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999988
No 354
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=32.23 E-value=9.4 Score=37.95 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++-||+.|||||..+
T Consensus 10 i~v~~G~mgsGKTT~l 25 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEEL 25 (191)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5677999999999887
No 355
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.21 E-value=2.5e+02 Score=24.29 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 645 ~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.++..+..|+++....+..+..++.....+..-++..+....+.+.+++...+
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777776666666666666666666666655544
No 356
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.14 E-value=3.1e+02 Score=25.40 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=17.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVT 905 (946)
Q Consensus 861 ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~ 905 (946)
++.+...++..++.++..+.-++..++.+..+|..++...+..+.
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433333334333334433333333333
No 357
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=31.99 E-value=12 Score=36.88 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+.|||||+.+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 358
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.98 E-value=12 Score=45.33 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=15.9
Q ss_pred hhcCCCeeEEEeccCCCCccccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..|. .++..|+||||||...
T Consensus 36 ~~~~~--~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGK--NALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTC--EEEEECCGGGCHHHHH
T ss_pred hcCCC--cEEEEcCCccHHHHHH
Confidence 34454 4788899999999776
No 359
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=31.97 E-value=2.8e+02 Score=24.79 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002261 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (946)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~~~~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~ 685 (946)
.+.|+.++.+++.+..++...-++.............+++..|...-...+..+..|+.....-+.-.+..+-++
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333222222223333334445566667776666666666666644443333333333333
No 360
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=31.88 E-value=17 Score=39.21 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=23.3
Q ss_pred chhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-+-+|.++. |+ ...++.||++|||||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 4467888885 44 346888999999999876
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=31.81 E-value=13 Score=37.69 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.6
Q ss_pred eEEEeccCCCCcccc
Q 002261 83 TVLAYGQTGSGKTYT 97 (946)
Q Consensus 83 ti~ayGqtgSGKT~T 97 (946)
.||.+|++||||++-
T Consensus 31 iI~llGpPGsGKgTq 45 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEECCTTCCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999764
No 362
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=31.40 E-value=13 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999865
No 363
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=31.35 E-value=19 Score=42.96 Aligned_cols=46 Identities=30% Similarity=0.536 Sum_probs=29.5
Q ss_pred EEeceEecCCCCCccccccccchhhHHhhhcCCCeeEEEeccCCCCcccccc
Q 002261 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (946)
Q Consensus 48 f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (946)
|..-.=|.|.+. |..- +..++..+-.|... ....|.|||||||||.
T Consensus 5 ~~~~~~~~p~~~-Q~~~----i~~l~~~~~~~~~~-~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 5 FELVSKYQPQGD-QPKA----IEKLVKGIQEGKKH-QTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCSCCCCTT-HHHH----HHHHHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred ceeecCCCCCCC-CHHH----HHHHHHHHhcCCCc-EEEECcCCcHHHHHHH
Confidence 555555666554 3332 34466776667533 3456999999999994
No 364
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=31.31 E-value=15 Score=41.43 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.1
Q ss_pred hhcCCCeeEEEeccCCCCccccc
Q 002261 76 LFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345655 567899999999885
No 365
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=31.18 E-value=15 Score=39.30 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.5
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999887
No 366
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.08 E-value=49 Score=23.04 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002261 537 IMELEEEKRIVQQERDRLLAEI 558 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l 558 (946)
|++|++++..|-.++..|..+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 4555555555555554444443
No 367
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=31.01 E-value=13 Score=35.88 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998755
No 368
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.90 E-value=2.6e+02 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002261 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (946)
Q Consensus 590 Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk 622 (946)
...+...+.++...|..+..++..|+.++..|+
T Consensus 56 F~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 56 FQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566555555555544443
No 369
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.76 E-value=19 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.2
Q ss_pred cchhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 68 CVAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 68 ~~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
+.-|-+|.++. |+ ...++.||++|||||+..
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 35577888885 44 456889999999999876
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=30.74 E-value=13 Score=37.09 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|...|++|||||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=30.63 E-value=14 Score=37.16 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.9
Q ss_pred EEEeccCCCCcccc
Q 002261 84 VLAYGQTGSGKTYT 97 (946)
Q Consensus 84 i~ayGqtgSGKT~T 97 (946)
|+-.|++||||++-
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999753
No 372
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=30.58 E-value=12 Score=43.58 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=15.3
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
..-++.+|.||||||+++
T Consensus 214 ~pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp SCCEEEECCTTSSHHHHH
T ss_pred CCeeEEECCCCCCHHHHH
Confidence 356788999999999987
No 373
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=30.58 E-value=18 Score=39.50 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=24.3
Q ss_pred ccchhhHHhhhc--CC--CeeEEEeccCCCCccccc
Q 002261 67 ECVAPLVDGLFQ--GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 67 ~~~~~lv~~~l~--G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.+.-+-+|.++. |+ ...++.||++|||||+.+
T Consensus 43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 335567888887 54 446888999999999885
No 374
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=30.46 E-value=13 Score=44.44 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=13.1
Q ss_pred eEEEeccCCCCcccc
Q 002261 83 TVLAYGQTGSGKTYT 97 (946)
Q Consensus 83 ti~ayGqtgSGKT~T 97 (946)
.|+..|+||||||+.
T Consensus 157 ~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYH 171 (677)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999984
No 375
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=30.42 E-value=15 Score=36.64 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=13.3
Q ss_pred CeeEEEeccCCCCccc
Q 002261 81 NATVLAYGQTGSGKTY 96 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~ 96 (946)
--..|-||+.|||||.
T Consensus 20 g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 20 GQIQVILGPMFSGKST 35 (195)
T ss_dssp CEEEEEEECTTSCHHH
T ss_pred eEEEEEECCCCCcHHH
Confidence 3467899999999993
No 376
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.41 E-value=2.4e+02 Score=23.59 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002261 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 582 ~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
.|=.+|.+|+-+..+ |+-.+-+.|.+++...+||..++.+
T Consensus 23 ~L~qEi~~Lr~kv~e---lEnErlQyEkKLKsTK~El~~Lq~q 62 (81)
T 3qh9_A 23 ELLQELRHLKIKVEE---LENERNQYEWKLKATKAEVAQLQEQ 62 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444454455544333 6666677777777776666666654
No 377
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.22 E-value=2.8e+02 Score=24.26 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC-CCCcCCCCCccccccCChhHHHHHHHHHHHHhhhcHHHHHHHH
Q 002261 738 NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNG-HSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMA 816 (946)
Q Consensus 738 ~~~e~~~~~e~l~e~R~~l~~el~~l~~~~e~~~~~-~~~~~~~~~~~~~~~l~~~~~~~qi~~Le~~~~~~~~~l~~l~ 816 (946)
.+.+....+..+...+..+..++..++......... ...|. |-..+.+......|...+..+......+.++.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPv------Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPV------CGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTT------TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777887777766554431 11111 22233334334444444444444444444444
Q ss_pred HHhhHH
Q 002261 817 SQLSEA 822 (946)
Q Consensus 817 ~~~~e~ 822 (946)
..+..+
T Consensus 85 ~~i~~l 90 (112)
T 1l8d_A 85 DRKSEL 90 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 378
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.15 E-value=13 Score=43.24 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346889999999999876
No 379
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.14 E-value=15 Score=35.27 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=10.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999865
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=29.87 E-value=14 Score=35.61 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+.-
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999863
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=29.82 E-value=15 Score=35.29 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+.|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4777899999999864
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=29.69 E-value=15 Score=35.83 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998765
No 383
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=29.66 E-value=15 Score=40.74 Aligned_cols=17 Identities=35% Similarity=0.218 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|..+|++|||||+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999877
No 384
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.60 E-value=2.5e+02 Score=23.43 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002261 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 571 Kl~~~~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
||+-.....+.....+|..|++-+ .+|..-+.+++.-+..|..|-.++...
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~---~EL~~G~~KL~~mi~~l~~E~~~l~~n 61 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTE---EDLKKGHQKLEEMVTRLDQEVAEVDKN 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344333344455555555555443 346666666666666655555555544
No 385
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=29.53 E-value=15 Score=36.21 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999865
No 386
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=29.52 E-value=18 Score=39.59 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.8
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|.-..|+-+|+.|||||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566667889999999999876
No 387
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.47 E-value=75 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002261 537 IMELEEEKRIVQQERDRLLAEI 558 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l 558 (946)
|++||+++..|-.++..|..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHH
Confidence 3455555555555555444443
No 388
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.40 E-value=2.9e+02 Score=24.21 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 002261 580 LKALEAQILELKK 592 (946)
Q Consensus 580 l~~lE~~~~~Lk~ 592 (946)
++.++..|.+||+
T Consensus 84 Vsalq~KiaeLKr 96 (107)
T 2k48_A 84 VSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 389
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=29.32 E-value=16 Score=36.51 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4467899999999877
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=29.06 E-value=16 Score=34.49 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999764
No 391
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=29.05 E-value=17 Score=45.75 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.|..++.|.| ++..++||||||...
T Consensus 94 ai~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 94 AISCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHHH
Confidence 4556667766 678899999999864
No 392
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=28.99 E-value=17 Score=35.49 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=22.1
Q ss_pred hhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.++...++......|+..|.+|+|||..+
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHH
Confidence 34455556666677899999999999876
No 393
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=28.95 E-value=20 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=17.8
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTY 96 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~ 96 (946)
++..++.|.| |++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4556678866 5778999999995
No 394
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=28.93 E-value=16 Score=39.21 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+||||||..-
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5777899999998654
No 395
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=28.91 E-value=15 Score=35.74 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=12.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|.+|||||+++
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556699999999877
No 396
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=28.77 E-value=19 Score=35.41 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.2
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
....|+..|..|||||+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3446888999999999865
No 397
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=28.76 E-value=16 Score=44.22 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
.++.++..|..|||||+||
T Consensus 23 ~~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHH
Confidence 4567888899999999999
No 398
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=28.61 E-value=17 Score=46.30 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=19.7
Q ss_pred hhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+|..++.|.+ |+..|+||||||...
T Consensus 191 ~AI~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 191 TAISCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHHHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCChHHHH
Confidence 34666677765 578899999999764
No 399
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.60 E-value=79 Score=21.61 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002261 537 IMELEEEKRIVQQERDRLLAEIE 559 (946)
Q Consensus 537 i~~Le~ei~~l~kEr~~L~~~l~ 559 (946)
|++||+++..|-.++..|..++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~ 24 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHH
Confidence 44555555555555555554443
No 400
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=28.59 E-value=19 Score=36.42 Aligned_cols=30 Identities=43% Similarity=0.589 Sum_probs=21.8
Q ss_pred chhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.-|-+|.++. |+ ...++.+|.+|+|||...
T Consensus 15 Gi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 15 GIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp SCTTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred CcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 3455677775 54 446788999999999654
No 401
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.50 E-value=2.9e+02 Score=23.94 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002261 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI 621 (946)
Q Consensus 576 ~~~kl~~lE~~~~~Lk~~~~~~~~l~k~k~k~e~~~~~L~~ei~~l 621 (946)
...-..+|+.+|.+|.++......+.+.-..+-.+...|..|+...
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334445555555555444443333333333444444444444443
No 402
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=28.48 E-value=14 Score=42.58 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++..|.||||||+.+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45678899999999876
No 403
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=28.41 E-value=15 Score=36.97 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999865
No 404
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=28.39 E-value=20 Score=39.38 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=24.7
Q ss_pred ccchhhHHhhhc--CC--CeeEEEeccCCCCccccc
Q 002261 67 ECVAPLVDGLFQ--GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 67 ~~~~~lv~~~l~--G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.+.-+-+|.++. |+ ...++.||++|||||+.+
T Consensus 43 ~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 345577888887 55 346888999999999876
No 405
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.39 E-value=12 Score=45.15 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=17.5
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..+++|.| ++..|+||||||...
T Consensus 34 i~~i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 34 VEKVFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHHTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHhCCCc--EEEEcCCccHHHHHH
Confidence 334456655 577899999999876
No 406
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.38 E-value=2.2e+02 Score=28.49 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002261 546 IVQQERDRL 554 (946)
Q Consensus 546 ~l~kEr~~L 554 (946)
.+-.++...
T Consensus 164 ~~v~~K~~~ 172 (213)
T 1ik9_A 164 KAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 407
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=28.35 E-value=17 Score=37.79 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|.+|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35888999999999865
No 408
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=28.32 E-value=21 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+.+.-.|...-++..|+||||||.+.
T Consensus 616 l~~~~~g~p~d~ll~~~TGsGKT~va 641 (1151)
T 2eyq_A 616 LSDMCQPLAMDRLVCGDVGFGKTEVA 641 (1151)
T ss_dssp HHHHHSSSCCEEEEECCCCTTTHHHH
T ss_pred HHHHhcCCcCcEEEECCCCCCHHHHH
Confidence 33333477667899999999999764
No 409
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=28.25 E-value=15 Score=39.38 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=13.9
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|.-.|++|||||+++
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 35566799999999988
No 410
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=28.15 E-value=15 Score=39.30 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=18.8
Q ss_pred hhHHhhhcCC--CeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~--n~ti~ayGqtgSGKT~Tm 98 (946)
++++++--.+ .-+|.-+|++|||||+.+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHH
Confidence 4555443222 335677899999999887
No 411
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.05 E-value=16 Score=35.89 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999765
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.04 E-value=16 Score=35.32 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999864
No 413
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.02 E-value=52 Score=22.56 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002261 538 MELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 538 ~~Le~ei~~l~kEr~~L~~~ 557 (946)
++||+++..|-.++..|..+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~E 22 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENE 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444443
No 414
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=27.99 E-value=16 Score=36.09 Aligned_cols=16 Identities=44% Similarity=0.380 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999876
No 415
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.95 E-value=56 Score=22.51 Aligned_cols=29 Identities=7% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENLAA 563 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~~~ 563 (946)
++|++||+++..|-.++..|..++..+.+
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHH
No 416
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.84 E-value=16 Score=36.51 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 417
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.81 E-value=18 Score=40.87 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|++|||||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666799999999998
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=27.73 E-value=18 Score=39.37 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+||||||..-
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6788899999998654
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=27.71 E-value=16 Score=36.24 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.8
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+..|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999875
No 420
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=27.65 E-value=17 Score=35.75 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.2
Q ss_pred EEEeccCCCCcccc
Q 002261 84 VLAYGQTGSGKTYT 97 (946)
Q Consensus 84 i~ayGqtgSGKT~T 97 (946)
|+.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 78899999999854
No 421
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=27.63 E-value=24 Score=45.52 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.7
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++..|..|||||++|
T Consensus 22 ~~~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 22 TGQDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp CSSCEEEEECTTCCHHHHH
T ss_pred CCCCEEEEecCCCcHHHHH
Confidence 3667888899999999998
No 422
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.62 E-value=3e+02 Score=23.81 Aligned_cols=55 Identities=29% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAE 557 (946)
Q Consensus 498 ~~l~~el~~L~~~Le~kE~~~~~~~k~~~~~~~~~~e~ki~~Le~ei~~l~kEr~~L~~~ 557 (946)
.+|=++--+|.+.++..+.+-..+. ...+.+..++.+|+.++..|..|...|..+
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr-----~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLR-----LESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777766665554433 334555688889999999988888877765
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.55 E-value=17 Score=39.17 Aligned_cols=16 Identities=44% Similarity=0.391 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+||||||..-
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4667899999998654
No 424
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.53 E-value=17 Score=35.27 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-.|..|||||+..
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35778899999999865
No 425
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.48 E-value=16 Score=37.11 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.5
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|+.|||||+.+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999887
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=27.38 E-value=17 Score=39.90 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.3
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
++-+|++|||||..+
T Consensus 26 ~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 346899999999766
No 427
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=27.21 E-value=19 Score=38.89 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++-||++|+|||+..
T Consensus 124 sviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEEECSCSSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34678999999999876
No 428
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=27.20 E-value=1.1e+02 Score=31.92 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=56.0
Q ss_pred ceeEEeceEecCCCCCccccccccchhhHHhhh-cCCCeeEEEeccCCCCccccccCCCCCCCCcccHHHHHHHHHHHHH
Q 002261 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIE 123 (946)
Q Consensus 45 ~~~f~FD~Vf~~~~s~q~~v~~~~~~~lv~~~l-~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~ 123 (946)
.++|.|++|....--+..+++..-.++..+-++ .+.|+++|+.++.- -.-+.-.++..+...
T Consensus 45 ~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL~k~~NfnlISiS~~~---------------~~~lr~~ll~f~~~~-- 107 (275)
T 4gkp_A 45 HKTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCLKRRENFNLFSVGSSN---------------IPNTFEKLLAFFKNN-- 107 (275)
T ss_dssp TEEEECSEEEEECSSSCCCGGGTHHHHHHHHHHHTTCCEEEEEECCSS---------------CCSHHHHHHHHHHHH--
T ss_pred ccEEEEEeeeccccCCHHHHHHHHHHHHHHHHhccCCCceEEEecCCC---------------cHHHHHHHHHHHHHh--
Confidence 479999999976555556666666789999888 69999999987432 122334444444432
Q ss_pred hccccceEEEEeehhhhhhHHHH-HhhcCc
Q 002261 124 TLRHQMEFQLHVSFIEILKEEVR-DLLDSV 152 (946)
Q Consensus 124 ~~~~~~~~~v~vS~~EIy~e~v~-DLL~~~ 152 (946)
-...|.|.+-|+=+-.+..- |||...
T Consensus 108 ---y~~~y~itlQ~V~Ls~~~~S~Dll~~~ 134 (275)
T 4gkp_A 108 ---YFDKFVITLQYVMLSDNADSQDLLSNN 134 (275)
T ss_dssp ---TTTTEEEEEEEEEEC----CEETTCC-
T ss_pred ---ccccceEEEEEEEecCCCcccccccCC
Confidence 23467777777766655543 777543
No 429
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=27.19 E-value=20 Score=34.79 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45677899999999866
No 430
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=27.13 E-value=14 Score=41.47 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||++|
T Consensus 71 ~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555799999999997
No 431
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=27.12 E-value=20 Score=43.06 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..++..|+||||||...
T Consensus 47 ~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEEcCCCCcHHHHH
Confidence 45678899999999886
No 432
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=27.06 E-value=16 Score=36.11 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+-.||+|||||..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998765
No 433
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.99 E-value=1.5e+02 Score=24.72 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIEN 560 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~ 560 (946)
+-+.....+|..|+.....|..++.+
T Consensus 35 ~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 35 EALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555444443
No 434
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.85 E-value=2.7e+02 Score=23.07 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=21.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 860 FQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTI 906 (946)
Q Consensus 860 ~ql~~~~~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~ 906 (946)
..+...+..+++.......+...+..+......|..+++..++.+..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 435
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=26.83 E-value=49 Score=34.42 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=20.0
Q ss_pred hhhHHhhhcC---CCeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~G---~n~ti~ayGqtgSGKT~Tm 98 (946)
-|-+|.++.| -+.+++..|.+||||| |+
T Consensus 7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l 37 (260)
T 3bs4_A 7 IEELDREIGKIKKHSLILIHEEDASSRGK-DI 37 (260)
T ss_dssp SHHHHHHHCCBCTTCEEEEEECSGGGCHH-HH
T ss_pred cHHHHHHhCCCCCCCcEEEEEeCCCccHH-HH
Confidence 4556777765 3566677788888888 77
No 436
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=26.81 E-value=17 Score=35.11 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=15.9
Q ss_pred CCeeEEEeccCCCCccccc
Q 002261 80 YNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (946)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4457899999999999776
No 437
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.80 E-value=2.8e+02 Score=23.18 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 531 ~~~e~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
..++.++.+.+.++..|..|...+..++..+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555443
No 438
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=26.76 E-value=17 Score=37.43 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||+.+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 439
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.60 E-value=2.2e+02 Score=23.33 Aligned_cols=7 Identities=14% Similarity=-0.040 Sum_probs=1.9
Q ss_pred ccccHHH
Q 002261 837 HLRFMGD 843 (946)
Q Consensus 837 ~~~sl~e 843 (946)
...|+.+
T Consensus 17 ~mgti~e 23 (72)
T 3nmd_A 17 GRGSLRD 23 (72)
T ss_dssp --CHHHH
T ss_pred cCCcHHH
Confidence 3334333
No 440
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=26.54 E-value=16 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999775
No 441
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=26.47 E-value=17 Score=37.23 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|++|||||+.+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 442
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.44 E-value=3.1e+02 Score=23.61 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcC
Q 002261 867 TEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASV 914 (946)
Q Consensus 867 ~~l~e~~~~~~~l~~~~r~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (946)
+.+.-++.+..-..+....-...++.+..+.+.+.+.+..+.++.+.+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666778888888888888888887765
No 443
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=26.43 E-value=16 Score=36.83 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=12.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|+.|||||+.|
T Consensus 38 ~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999988
No 444
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=26.35 E-value=18 Score=35.98 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.8
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
|+-.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999875
No 445
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=26.33 E-value=17 Score=39.15 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.8
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
+|...|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 446
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=26.25 E-value=17 Score=38.21 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||+.+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 447
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=26.09 E-value=19 Score=43.06 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=20.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+.|.||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999987
No 448
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=25.87 E-value=18 Score=44.13 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=16.4
Q ss_pred HHhhhcCCCeeEEEeccCCCCccccc
Q 002261 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
|..++.|. ..|+..|+||||||..+
T Consensus 102 i~~~l~~~-~~vii~gpTGSGKTtll 126 (773)
T 2xau_A 102 FLKLYQNN-QIMVFVGETGSGKTTQI 126 (773)
T ss_dssp HHHHHHHC-SEEEEECCTTSSHHHHH
T ss_pred HHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 33344432 24667899999999954
No 449
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=25.83 E-value=23 Score=42.18 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.++..|+||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 4678899999999776
No 450
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.74 E-value=1.2e+02 Score=20.70 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 740 HEVRFKYEKQSQVQAALADELTILKQ 765 (946)
Q Consensus 740 ~e~~~~~e~l~e~R~~l~~el~~l~~ 765 (946)
..+++..+.++..+..|+.|+..|+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677899999999999999998876
No 451
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.74 E-value=18 Score=37.56 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||+.|
T Consensus 35 ~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 452
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=25.61 E-value=23 Score=39.88 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=14.9
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+.+|++|+|||+|.
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36778899999999998
No 453
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=25.60 E-value=21 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|.-.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999876
No 454
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.54 E-value=2.5e+02 Score=31.92 Aligned_cols=45 Identities=18% Similarity=0.043 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002261 646 REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (946)
Q Consensus 646 ~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le~ 698 (946)
..|+|.++++.....+..+.+ ...|+.++.++.+..+++.+.+..
T Consensus 59 ~sk~i~~~k~~~~~~~~l~~~--------~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 59 VQKEIGKRFKAKEDAKDLIAE--------KEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHTTCCCHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666655444333332 234556777777777777777764
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.53 E-value=18 Score=37.08 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||+.+
T Consensus 34 ~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 456
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.48 E-value=3.4e+02 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002261 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (946)
Q Consensus 535 ~ki~~Le~ei~~l~kEr~~L~~~l~~~ 561 (946)
.++..+..++..++.++..+..-+..+
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444443
No 457
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.43 E-value=3e+02 Score=23.14 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 650 ~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
+..|+......+..+..++.....+..-++.++....+.+.+++...+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556666655555555555566666555555554443
No 458
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.35 E-value=19 Score=35.42 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3677899999999865
No 459
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.30 E-value=19 Score=37.62 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.6
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||+.|
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999987
No 460
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.28 E-value=22 Score=40.24 Aligned_cols=18 Identities=44% Similarity=0.577 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|+..|++|||||+|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 456788899999999998
No 461
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=25.23 E-value=20 Score=34.66 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999754
No 462
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=25.20 E-value=19 Score=37.70 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..+..+|++|||||+.+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35678899999999886
No 463
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=25.19 E-value=23 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999865
No 464
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=25.10 E-value=20 Score=34.96 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.1
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|..|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3667899999999765
No 465
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=24.95 E-value=27 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=19.3
Q ss_pred hHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+..++.|.| +++.++||||||...
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~~ 110 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTFG 110 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHHH
Confidence 4566778876 578899999999843
No 466
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=24.90 E-value=21 Score=43.19 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=20.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+.|.||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999987
No 467
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=24.88 E-value=21 Score=33.80 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|..|||||+.-
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778899999999764
No 468
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=24.82 E-value=19 Score=37.14 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|++|||||+.|
T Consensus 37 ~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 469
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=24.75 E-value=19 Score=37.44 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|++|||||+.|
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 470
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=24.74 E-value=20 Score=34.91 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=12.9
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|.+|||||+.+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3455699999999877
No 471
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.70 E-value=3.7e+02 Score=23.92 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002261 609 EAAKRLQAEIQSIKAQKVQLQNKI 632 (946)
Q Consensus 609 ~~~~~L~~ei~~lk~~kv~L~~~~ 632 (946)
..+..|+.+|..++..+-.|...+
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544443333
No 472
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.68 E-value=19 Score=37.55 Aligned_cols=16 Identities=44% Similarity=0.682 Sum_probs=13.3
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||+.|
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999987
No 473
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=24.64 E-value=20 Score=35.95 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.6
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+.|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999865
No 474
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=24.63 E-value=19 Score=39.55 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=12.9
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||++|
T Consensus 33 ~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 455799999999987
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=24.63 E-value=20 Score=36.92 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|++|||||+.+
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999987
No 476
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=24.59 E-value=23 Score=37.81 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=21.5
Q ss_pred chhhHHhhhcCCCeeEEEeccCCCCccccc
Q 002261 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
+..+...+-.|..-.++-||+.|+|||.+.
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 344444445566557888999999998876
No 477
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=24.54 E-value=19 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999766
No 478
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.50 E-value=21 Score=35.13 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.2
Q ss_pred eeEEEeccCCCCccccc
Q 002261 82 ATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (946)
..|+..|..|||||+..
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778899999999875
No 479
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=24.41 E-value=23 Score=38.14 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.0
Q ss_pred hhHHhhhcCC-CeeEEEeccCCCCccccc
Q 002261 71 PLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~l~G~-n~ti~ayGqtgSGKT~Tm 98 (946)
.+...+-.|. ...++-||+.|+|||.+.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 3444444554 446899999999999886
No 480
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=24.34 E-value=19 Score=35.16 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.1
Q ss_pred CeeEEEeccCCCCccccc
Q 002261 81 NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (946)
...|...|..|+|||..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEEESSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 356788899999999877
No 481
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.28 E-value=17 Score=42.77 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+-||++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 6899999999999887
No 482
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=24.14 E-value=20 Score=37.42 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||+.+
T Consensus 52 i~~liG~NGsGKSTLl 67 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 3456699999999987
No 483
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=24.10 E-value=21 Score=37.40 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||+.+
T Consensus 40 ~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345799999999987
No 484
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=24.07 E-value=29 Score=33.11 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.7
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLI 18 (190)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999877
No 485
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=24.07 E-value=20 Score=35.44 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+..
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999766
No 486
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=24.04 E-value=22 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=20.0
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999987
No 487
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.97 E-value=20 Score=37.20 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.+.-.|+.|||||+.|
T Consensus 43 i~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456699999999987
No 488
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=23.95 E-value=22 Score=34.12 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|...|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998865
No 489
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=23.93 E-value=28 Score=34.03 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=20.5
Q ss_pred hhHHhh-hcCCCeeEEEeccCCCCccccc
Q 002261 71 PLVDGL-FQGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 71 ~lv~~~-l~G~n~ti~ayGqtgSGKT~Tm 98 (946)
++++.+ +.-....|...|.+|+|||..+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 445555 4444567888999999999887
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.90 E-value=26 Score=40.50 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred hhhHHhhhc-CC--CeeEEEeccCCCCccccc
Q 002261 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 70 ~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (946)
.+.++++.- |+ ..++..+|++|||||..+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 356777776 33 446778899999999986
No 491
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.82 E-value=29 Score=36.89 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=13.5
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|...|.+|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999998
No 492
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=23.79 E-value=21 Score=39.26 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=12.9
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||++|
T Consensus 32 ~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 32 VALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 445699999999998
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.74 E-value=21 Score=36.36 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.7
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|+.|||||+.|
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999987
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=23.72 E-value=23 Score=38.59 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=13.2
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|+..|+||||||..-
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5778899999998744
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=23.72 E-value=21 Score=39.56 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.9
Q ss_pred EEEeccCCCCccccc
Q 002261 84 VLAYGQTGSGKTYTM 98 (946)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (946)
+.-.|++|||||++|
T Consensus 32 ~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 455799999999997
No 496
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=23.70 E-value=22 Score=44.54 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCccccc
Q 002261 78 QGYNATVLAYGQTGSGKTYTM 98 (946)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (946)
.+.|.||+..|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999875
No 497
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.69 E-value=7.3e+02 Score=26.91 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002261 632 IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (946)
Q Consensus 632 ~k~e~~~~r~~~~~~~kE~~~Lkk~~rk~~~e~~kle~~~~~q~~vl~rk~eE~~a~~k~Lke~le 697 (946)
.+.--..|-+.-..+++.|..||++-...-.. -.+|+.-++..-.-|+||..+.+
T Consensus 104 ~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~-----------ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 104 ANNNDNTFKQINEDLRSRIEILRRKVIEQVQR-----------INLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555566666666554443222 23455566667777777777765
No 498
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=23.67 E-value=24 Score=38.00 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccccc
Q 002261 83 TVLAYGQTGSGKTYTM 98 (946)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (946)
.|.-.|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566699999999887
No 499
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.58 E-value=3.6e+02 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=12.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 002261 602 KQKHKSDEAAKRLQAEIQSIKAQ 624 (946)
Q Consensus 602 k~k~k~e~~~~~L~~ei~~lk~~ 624 (946)
..+...|.....+..||++|...
T Consensus 40 ~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 40 ELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554
No 500
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=23.57 E-value=21 Score=35.49 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q 002261 84 VLAYGQTGSGKTY 96 (946)
Q Consensus 84 i~ayGqtgSGKT~ 96 (946)
|+..|..|||||+
T Consensus 3 I~l~G~~GsGKsT 15 (214)
T 1e4v_A 3 IILLGAPVAGKGT 15 (214)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Done!