Query 002264
Match_columns 945
No_of_seqs 962 out of 4365
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 20:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 3E-73 6.6E-78 551.0 36.3 490 5-660 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 6.6E-65 1.4E-69 477.3 32.6 488 5-657 7-507 (508)
3 KOG0318 WD40 repeat stress pro 100.0 5E-52 1.1E-56 416.3 53.5 551 318-944 33-601 (603)
4 KOG0319 WD40-repeat-containing 100.0 7.6E-54 1.7E-58 446.8 41.8 541 303-943 62-617 (775)
5 KOG0319 WD40-repeat-containing 100.0 1.6E-53 3.4E-58 444.4 42.1 536 350-944 25-576 (775)
6 KOG0271 Notchless-like WD40 re 100.0 1.1E-53 2.5E-58 411.1 25.1 375 327-943 98-479 (480)
7 KOG0291 WD40-repeat-containing 100.0 4.6E-47 9.9E-52 396.1 52.7 496 340-945 51-612 (893)
8 KOG0291 WD40-repeat-containing 100.0 5E-47 1.1E-51 395.7 52.2 509 335-944 87-708 (893)
9 KOG0306 WD40-repeat-containing 100.0 6.9E-48 1.5E-52 402.0 45.5 508 327-943 47-662 (888)
10 KOG0318 WD40 repeat stress pro 100.0 1.4E-46 3.1E-51 377.1 51.0 504 350-944 24-559 (603)
11 KOG0306 WD40-repeat-containing 100.0 9.1E-45 2E-49 378.7 41.6 544 345-944 22-621 (888)
12 KOG0271 Notchless-like WD40 re 100.0 1.7E-45 3.7E-50 354.8 25.4 297 327-657 141-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 2E-42 4.3E-47 358.0 40.8 505 337-945 70-713 (1080)
14 KOG0263 Transcription initiati 100.0 3.9E-42 8.4E-47 364.1 35.3 274 330-616 363-650 (707)
15 KOG0272 U4/U6 small nuclear ri 100.0 4E-42 8.6E-47 336.6 23.1 283 341-657 172-458 (459)
16 KOG0273 Beta-transducin family 100.0 6.9E-40 1.5E-44 325.0 37.4 302 333-661 167-484 (524)
17 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-41 9.3E-46 329.4 23.6 251 404-667 173-425 (459)
18 KOG0286 G-protein beta subunit 100.0 7.6E-40 1.6E-44 305.4 30.6 291 337-657 47-343 (343)
19 KOG0279 G protein beta subunit 100.0 4.1E-39 8.9E-44 298.9 31.4 293 341-659 12-313 (315)
20 KOG0276 Vesicle coat complex C 100.0 6.3E-38 1.4E-42 320.8 40.5 467 343-937 12-483 (794)
21 KOG0286 G-protein beta subunit 100.0 1E-36 2.2E-41 284.5 31.9 249 400-661 49-305 (343)
22 KOG0315 G-protein beta subunit 100.0 1.6E-36 3.5E-41 276.5 31.7 296 508-924 10-309 (311)
23 KOG0284 Polyadenylation factor 100.0 1.3E-37 2.9E-42 303.3 20.6 342 284-659 24-380 (464)
24 KOG1063 RNA polymerase II elon 100.0 4.2E-35 9.2E-40 304.4 40.3 525 339-944 49-647 (764)
25 KOG1539 WD repeat protein [Gen 100.0 1.8E-34 3.9E-39 305.9 43.9 541 346-945 36-606 (910)
26 KOG0315 G-protein beta subunit 100.0 1.1E-35 2.3E-40 271.2 28.8 286 356-673 9-301 (311)
27 KOG1539 WD repeat protein [Gen 100.0 2.9E-34 6.2E-39 304.3 43.5 527 318-943 88-646 (910)
28 KOG0295 WD40 repeat-containing 100.0 4.8E-36 1E-40 288.5 26.3 291 335-658 99-405 (406)
29 KOG0296 Angio-associated migra 100.0 9E-35 1.9E-39 280.0 34.5 338 446-945 59-398 (399)
30 KOG0273 Beta-transducin family 100.0 3.2E-35 7E-40 292.0 31.3 335 404-903 176-523 (524)
31 KOG0279 G protein beta subunit 100.0 1.4E-34 3E-39 268.9 31.6 248 400-661 9-264 (315)
32 KOG0285 Pleiotropic regulator 100.0 6.1E-35 1.3E-39 279.6 26.3 290 337-660 143-440 (460)
33 KOG0292 Vesicle coat complex C 100.0 1.4E-33 3E-38 299.8 38.8 492 402-932 5-545 (1202)
34 KOG0265 U5 snRNP-specific prot 100.0 2.1E-34 4.5E-39 270.4 27.7 287 338-656 41-335 (338)
35 KOG0296 Angio-associated migra 100.0 1.2E-33 2.5E-38 272.4 33.6 328 402-903 60-398 (399)
36 KOG0645 WD40 repeat protein [G 100.0 1.1E-33 2.4E-38 261.6 31.5 288 339-659 9-311 (312)
37 KOG0276 Vesicle coat complex C 100.0 3.4E-33 7.3E-38 286.3 37.7 437 402-945 9-452 (794)
38 KOG0292 Vesicle coat complex C 100.0 5.7E-33 1.2E-37 295.2 39.9 282 343-659 8-321 (1202)
39 KOG2106 Uncharacterized conser 100.0 2.2E-32 4.8E-37 273.6 41.2 497 327-944 89-625 (626)
40 KOG1408 WD40 repeat protein [F 100.0 4.3E-33 9.4E-38 289.0 37.2 478 327-904 106-714 (1080)
41 KOG1063 RNA polymerase II elon 100.0 6.8E-33 1.5E-37 288.1 36.2 571 319-945 72-763 (764)
42 KOG0295 WD40 repeat-containing 100.0 4.2E-34 9.1E-39 275.1 24.3 321 468-943 79-404 (406)
43 KOG0316 Conserved WD40 repeat- 100.0 1.4E-33 3.1E-38 255.0 25.3 288 334-658 6-298 (307)
44 KOG0285 Pleiotropic regulator 100.0 1.4E-33 3.1E-38 270.2 25.8 246 400-661 145-391 (460)
45 KOG0266 WD40 repeat-containing 100.0 8.5E-33 1.8E-37 305.8 32.6 285 343-659 158-454 (456)
46 KOG0265 U5 snRNP-specific prot 100.0 1.1E-32 2.4E-37 258.8 27.9 251 400-661 41-298 (338)
47 KOG2106 Uncharacterized conser 100.0 4.7E-31 1E-35 264.1 40.8 467 338-902 147-625 (626)
48 KOG0282 mRNA splicing factor [ 100.0 5.2E-34 1.1E-38 284.8 16.5 293 333-657 202-503 (503)
49 KOG0281 Beta-TrCP (transducin 100.0 2.5E-33 5.5E-38 267.1 17.3 274 343-662 196-480 (499)
50 KOG0284 Polyadenylation factor 100.0 5.4E-33 1.2E-37 271.2 19.4 240 406-659 96-337 (464)
51 KOG2048 WD40 repeat protein [G 100.0 4.7E-29 1E-33 259.5 48.7 520 343-929 24-585 (691)
52 cd00200 WD40 WD40 domain, foun 100.0 7.9E-31 1.7E-35 278.2 36.4 282 342-657 7-289 (289)
53 KOG0263 Transcription initiati 100.0 4.3E-32 9.3E-37 288.1 24.9 245 406-661 378-651 (707)
54 KOG2048 WD40 repeat protein [G 100.0 4.3E-29 9.3E-34 259.9 45.4 496 405-944 24-547 (691)
55 KOG0645 WD40 repeat protein [G 100.0 1.1E-30 2.4E-35 241.9 29.2 292 400-744 8-311 (312)
56 KOG0278 Serine/threonine kinas 100.0 4.8E-32 1E-36 247.2 19.6 289 336-661 6-299 (334)
57 KOG0293 WD40 repeat-containing 100.0 6.5E-32 1.4E-36 263.6 21.7 293 400-745 218-514 (519)
58 KOG0282 mRNA splicing factor [ 100.0 2E-32 4.2E-37 273.6 16.6 290 400-742 208-503 (503)
59 PLN00181 protein SPA1-RELATED; 100.0 7.8E-30 1.7E-34 305.1 40.1 292 341-658 480-792 (793)
60 KOG0266 WD40 repeat-containing 100.0 3.4E-30 7.5E-35 285.1 33.3 256 405-670 158-419 (456)
61 cd00200 WD40 WD40 domain, foun 100.0 3.9E-29 8.3E-34 265.2 36.1 247 401-661 4-251 (289)
62 PLN00181 protein SPA1-RELATED; 100.0 6.6E-29 1.4E-33 297.1 40.0 270 366-661 457-740 (793)
63 KOG0316 Conserved WD40 repeat- 100.0 6.1E-30 1.3E-34 231.6 22.9 274 399-693 10-286 (307)
64 KOG0281 Beta-TrCP (transducin 100.0 4.9E-31 1.1E-35 251.6 16.5 230 406-661 197-430 (499)
65 KOG0640 mRNA cleavage stimulat 100.0 3.1E-29 6.8E-34 235.9 28.1 307 338-658 106-425 (430)
66 KOG0288 WD40 repeat protein Ti 100.0 1.1E-30 2.4E-35 255.6 18.4 292 332-656 162-458 (459)
67 KOG0310 Conserved WD40 repeat- 100.0 2.3E-29 5E-34 252.3 27.7 284 343-660 25-310 (487)
68 KOG0313 Microtubule binding pr 100.0 2.4E-29 5.3E-34 243.7 26.0 289 334-659 95-418 (423)
69 KOG0643 Translation initiation 100.0 9.7E-29 2.1E-33 228.3 26.1 288 337-660 3-318 (327)
70 KOG0973 Histone transcription 100.0 4.5E-29 9.9E-34 274.7 28.2 306 342-661 11-357 (942)
71 KOG1445 Tumor-specific antigen 100.0 3.3E-28 7.1E-33 249.6 30.7 215 338-575 72-296 (1012)
72 KOG0643 Translation initiation 100.0 5.2E-28 1.1E-32 223.5 27.9 233 401-649 5-251 (327)
73 KOG0641 WD40 repeat protein [G 100.0 6.2E-27 1.3E-31 210.4 32.0 311 335-659 23-349 (350)
74 KOG0647 mRNA export protein (c 100.0 6.5E-28 1.4E-32 227.0 26.4 273 344-648 27-312 (347)
75 KOG1407 WD40 repeat protein [F 100.0 1.3E-27 2.9E-32 220.1 27.8 275 341-650 17-293 (313)
76 KOG0278 Serine/threonine kinas 100.0 4.3E-29 9.3E-34 228.0 17.4 286 531-944 7-296 (334)
77 KOG0274 Cdc4 and related F-box 100.0 1.1E-27 2.4E-32 262.6 30.4 292 327-661 191-484 (537)
78 KOG0283 WD40 repeat-containing 100.0 3.2E-28 6.9E-33 261.4 25.2 300 342-661 265-578 (712)
79 KOG0772 Uncharacterized conser 100.0 6.2E-28 1.4E-32 242.5 24.6 301 334-658 156-486 (641)
80 PTZ00421 coronin; Provisional 100.0 8.5E-27 1.8E-31 255.9 35.9 287 343-640 19-314 (493)
81 KOG0277 Peroxisomal targeting 100.0 6E-28 1.3E-32 221.5 21.6 283 348-658 12-308 (311)
82 KOG0275 Conserved WD40 repeat- 100.0 1.7E-28 3.7E-33 232.0 18.1 260 404-673 211-480 (508)
83 KOG0313 Microtubule binding pr 100.0 3.1E-27 6.6E-32 229.3 26.8 283 449-903 103-418 (423)
84 KOG0305 Anaphase promoting com 100.0 2.4E-27 5.1E-32 248.8 27.6 278 347-661 180-463 (484)
85 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-26 8.8E-31 217.6 32.8 281 343-659 13-303 (311)
86 KOG0640 mRNA cleavage stimulat 100.0 1.7E-27 3.6E-32 224.3 21.7 253 401-661 107-385 (430)
87 KOG1407 WD40 repeat protein [F 100.0 6.5E-27 1.4E-31 215.6 24.3 281 400-700 14-295 (313)
88 KOG0299 U3 snoRNP-associated p 100.0 1.4E-26 2.9E-31 230.6 26.7 294 341-656 139-453 (479)
89 KOG0308 Conserved WD40 repeat- 100.0 3.2E-27 7E-32 244.2 23.0 352 349-748 29-397 (735)
90 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-25 7E-30 211.4 32.6 275 401-693 9-291 (311)
91 KOG0268 Sof1-like rRNA process 100.0 1.5E-27 3.2E-32 229.8 16.7 241 402-661 62-304 (433)
92 KOG0289 mRNA splicing factor [ 100.0 5.7E-26 1.2E-30 224.0 28.1 283 345-658 220-505 (506)
93 KOG0305 Anaphase promoting com 100.0 3.2E-26 7E-31 240.3 27.6 259 327-617 201-463 (484)
94 KOG0308 Conserved WD40 repeat- 100.0 5.2E-27 1.1E-31 242.7 21.0 241 411-661 29-287 (735)
95 KOG0288 WD40 repeat protein Ti 99.9 3.1E-27 6.6E-32 231.7 17.1 275 401-693 170-447 (459)
96 PTZ00421 coronin; Provisional 99.9 2.4E-25 5.1E-30 244.6 33.1 271 405-688 19-314 (493)
97 KOG0268 Sof1-like rRNA process 99.9 2.4E-27 5.3E-32 228.3 15.2 284 340-661 62-347 (433)
98 KOG0299 U3 snoRNP-associated p 99.9 4.3E-26 9.4E-31 227.0 24.3 283 402-698 138-446 (479)
99 PTZ00420 coronin; Provisional 99.9 6.2E-25 1.3E-29 241.6 35.7 255 363-641 50-318 (568)
100 KOG0277 Peroxisomal targeting 99.9 4.8E-26 1E-30 209.1 21.1 249 337-614 53-308 (311)
101 KOG0301 Phospholipase A2-activ 99.9 1.6E-25 3.4E-30 233.8 27.3 280 338-660 7-289 (745)
102 KOG2096 WD40 repeat protein [G 99.9 9.7E-25 2.1E-29 206.7 27.6 304 488-901 80-400 (420)
103 KOG0772 Uncharacterized conser 99.9 2.6E-25 5.7E-30 223.8 25.2 301 532-901 161-485 (641)
104 KOG0310 Conserved WD40 repeat- 99.9 1.4E-25 2.9E-30 225.4 22.8 277 537-941 25-305 (487)
105 KOG0283 WD40 repeat-containing 99.9 1.5E-25 3.4E-30 240.8 24.8 255 404-670 265-542 (712)
106 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.5E-30 245.6 25.4 257 327-623 232-490 (537)
107 KOG0647 mRNA export protein (c 99.9 6.6E-25 1.4E-29 206.9 25.6 278 404-698 25-314 (347)
108 KOG0973 Histone transcription 99.9 4.7E-25 1E-29 243.3 28.7 248 403-660 10-313 (942)
109 KOG1036 Mitotic spindle checkp 99.9 1.7E-24 3.7E-29 205.2 27.8 267 344-649 13-294 (323)
110 KOG0294 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 205.6 27.1 244 400-661 37-283 (362)
111 KOG0300 WD40 repeat-containing 99.9 2.6E-25 5.6E-30 210.1 21.1 290 341-661 145-478 (481)
112 PTZ00420 coronin; Provisional 99.9 5.7E-24 1.2E-28 234.1 34.1 251 424-690 50-319 (568)
113 KOG0289 mRNA splicing factor [ 99.9 5.3E-24 1.2E-28 210.2 27.1 239 407-658 220-461 (506)
114 KOG1332 Vesicle coat complex C 99.9 4.8E-25 1E-29 201.4 17.8 254 400-660 5-287 (299)
115 KOG1273 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 201.4 25.1 295 332-661 12-324 (405)
116 KOG2096 WD40 repeat protein [G 99.9 4.8E-24 1E-28 202.0 24.7 313 400-858 80-400 (420)
117 KOG0641 WD40 repeat protein [G 99.9 1.3E-22 2.9E-27 182.6 31.1 249 404-661 30-305 (350)
118 KOG0639 Transducin-like enhanc 99.9 1.7E-24 3.6E-29 216.9 20.5 292 336-658 411-703 (705)
119 KOG0300 WD40 repeat-containing 99.9 6.3E-24 1.4E-28 200.8 21.9 291 401-744 143-476 (481)
120 KOG1963 WD40 repeat protein [G 99.9 4.2E-22 9E-27 215.1 38.4 466 409-945 19-538 (792)
121 KOG0646 WD40 repeat protein [G 99.9 1E-23 2.2E-28 210.7 23.6 223 406-640 81-330 (476)
122 KOG1036 Mitotic spindle checkp 99.9 4.4E-23 9.6E-28 195.7 26.5 272 405-698 12-295 (323)
123 KOG0294 WD40 repeat-containing 99.9 3.3E-23 7.2E-28 196.6 25.0 262 511-945 4-281 (362)
124 KOG0646 WD40 repeat protein [G 99.9 6.2E-24 1.3E-28 212.3 21.0 294 514-925 13-329 (476)
125 KOG0264 Nucleosome remodeling 99.9 1E-23 2.2E-28 210.7 22.6 265 337-616 117-405 (422)
126 KOG0301 Phospholipase A2-activ 99.9 5.1E-23 1.1E-27 215.1 25.8 281 575-944 5-287 (745)
127 KOG2055 WD40 repeat protein [G 99.9 7.6E-23 1.6E-27 203.9 25.0 287 344-659 213-512 (514)
128 KOG1963 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 211.8 35.4 488 343-909 15-589 (792)
129 KOG1332 Vesicle coat complex C 99.9 1.7E-23 3.7E-28 191.3 18.0 253 341-615 8-286 (299)
130 KOG0639 Transducin-like enhanc 99.9 2.9E-23 6.2E-28 208.2 20.7 283 535-902 416-703 (705)
131 KOG4283 Transcription-coupled 99.9 3E-22 6.5E-27 187.9 26.1 300 342-658 41-364 (397)
132 KOG0264 Nucleosome remodeling 99.9 5.3E-23 1.1E-27 205.6 22.0 252 402-660 120-405 (422)
133 KOG1274 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 214.2 30.5 277 342-656 11-297 (933)
134 KOG4328 WD40 protein [Function 99.9 2.6E-22 5.5E-27 200.0 25.4 293 343-659 185-495 (498)
135 KOG1538 Uncharacterized conser 99.9 1E-21 2.2E-26 203.5 30.5 273 346-660 14-294 (1081)
136 KOG2055 WD40 repeat protein [G 99.9 3.5E-22 7.6E-27 199.1 25.6 288 450-793 212-511 (514)
137 KOG1273 WD40 repeat protein [G 99.9 2.1E-22 4.5E-27 190.8 21.9 268 409-692 26-308 (405)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.7E-21 1.7E-25 203.1 37.0 293 509-925 2-300 (300)
139 KOG1274 WD40 repeat protein [G 99.9 7.6E-22 1.6E-26 213.2 28.8 267 403-692 10-285 (933)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.9E-21 1.1E-25 204.6 35.1 274 359-668 3-287 (300)
141 KOG0650 WD40 repeat nucleolar 99.9 6.2E-22 1.3E-26 203.2 24.1 280 329-658 384-679 (733)
142 KOG0267 Microtubule severing p 99.9 1.1E-23 2.4E-28 220.8 10.6 253 359-650 6-259 (825)
143 KOG0321 WD40 repeat-containing 99.9 2.3E-21 5E-26 200.8 23.4 288 350-662 55-394 (720)
144 KOG0321 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 201.4 22.7 288 411-745 54-392 (720)
145 KOG0650 WD40 repeat nucleolar 99.9 3.2E-21 7E-26 198.0 23.1 237 400-661 394-639 (733)
146 KOG4283 Transcription-coupled 99.9 1.2E-20 2.6E-25 177.2 24.7 295 535-943 40-363 (397)
147 KOG2445 Nuclear pore complex c 99.9 1.7E-20 3.7E-25 177.7 25.0 254 402-659 9-318 (361)
148 KOG0269 WD40 repeat-containing 99.9 4.2E-22 9.2E-27 210.9 15.3 247 346-617 89-342 (839)
149 KOG0269 WD40 repeat-containing 99.9 2E-21 4.2E-26 205.9 20.2 296 344-661 39-342 (839)
150 KOG1445 Tumor-specific antigen 99.9 5.2E-20 1.1E-24 189.9 29.1 242 596-904 590-845 (1012)
151 KOG1009 Chromatin assembly com 99.9 3.1E-20 6.8E-25 182.7 24.5 308 338-661 7-374 (434)
152 KOG0307 Vesicle coat complex C 99.9 1.4E-21 3E-26 216.9 16.0 296 347-661 9-329 (1049)
153 KOG0267 Microtubule severing p 99.9 3.4E-22 7.4E-27 209.8 10.5 233 342-606 26-259 (825)
154 KOG1034 Transcriptional repres 99.9 2.1E-20 4.5E-25 178.7 21.5 290 342-659 36-383 (385)
155 KOG0270 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 187.0 19.8 253 409-667 176-457 (463)
156 KOG2445 Nuclear pore complex c 99.9 1.7E-19 3.6E-24 171.0 25.1 265 341-627 10-333 (361)
157 KOG4497 Uncharacterized conser 99.9 2.2E-19 4.8E-24 171.3 24.7 407 411-938 13-425 (447)
158 COG2319 FOG: WD40 repeat [Gene 99.8 4E-17 8.6E-22 184.8 46.7 371 446-944 60-441 (466)
159 KOG4378 Nuclear protein COP1 [ 99.8 1E-19 2.2E-24 182.7 21.8 290 366-689 11-305 (673)
160 KOG2919 Guanine nucleotide-bin 99.8 9.4E-20 2E-24 173.7 19.6 283 588-936 52-361 (406)
161 KOG2919 Guanine nucleotide-bin 99.8 3.2E-19 6.9E-24 170.1 22.5 287 347-650 52-361 (406)
162 KOG1538 Uncharacterized conser 99.8 5.8E-19 1.3E-23 183.3 25.5 256 408-692 14-278 (1081)
163 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-19 5.7E-24 179.8 21.3 293 318-641 5-305 (673)
164 COG2319 FOG: WD40 repeat [Gene 99.8 6.1E-17 1.3E-21 183.2 43.0 371 339-794 60-442 (466)
165 KOG4328 WD40 protein [Function 99.8 9.8E-19 2.1E-23 174.7 24.1 306 487-904 179-496 (498)
166 KOG1034 Transcriptional repres 99.8 7.8E-19 1.7E-23 168.0 21.4 251 400-661 32-339 (385)
167 KOG1524 WD40 repeat-containing 99.8 2.3E-18 5E-23 174.7 25.0 479 404-944 12-522 (737)
168 KOG0302 Ribosome Assembly prot 99.8 4.8E-19 1E-23 172.5 18.4 173 335-527 201-379 (440)
169 KOG0303 Actin-binding protein 99.8 2.1E-18 4.5E-23 169.0 22.7 248 408-662 29-297 (472)
170 KOG0303 Actin-binding protein 99.8 3.2E-18 6.8E-23 167.7 23.2 234 400-640 75-320 (472)
171 KOG0302 Ribosome Assembly prot 99.8 1.8E-18 3.8E-23 168.5 21.2 263 334-607 141-431 (440)
172 KOG0270 WD40 repeat-containing 99.8 7.1E-19 1.5E-23 175.2 18.7 263 346-620 175-454 (463)
173 KOG1334 WD40 repeat protein [G 99.8 1.8E-19 3.9E-24 181.2 14.2 295 340-661 138-468 (559)
174 KOG1912 WD40 repeat protein [G 99.8 3.2E-17 7E-22 173.7 30.9 462 343-864 14-555 (1062)
175 KOG0307 Vesicle coat complex C 99.8 4.9E-19 1.1E-23 196.9 16.2 281 317-618 32-330 (1049)
176 KOG1009 Chromatin assembly com 99.8 9E-18 1.9E-22 165.5 22.3 316 494-907 13-376 (434)
177 KOG1524 WD40 repeat-containing 99.8 3.1E-17 6.8E-22 166.6 25.3 272 342-656 12-283 (737)
178 KOG4227 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 162.9 21.0 295 340-659 52-387 (609)
179 KOG0322 G-protein beta subunit 99.8 4E-18 8.6E-23 158.2 15.4 284 337-658 6-322 (323)
180 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-18 3E-23 178.4 13.1 251 401-661 289-563 (577)
181 KOG0644 Uncharacterized conser 99.8 1.2E-18 2.7E-23 185.7 13.0 280 338-661 184-470 (1113)
182 KOG0642 Cell-cycle nuclear pro 99.8 3.3E-18 7.1E-23 175.7 15.5 267 340-626 290-572 (577)
183 KOG1310 WD40 repeat protein [G 99.8 3.8E-17 8.2E-22 166.5 22.9 239 400-667 44-311 (758)
184 KOG0649 WD40 repeat protein [G 99.8 4.5E-16 9.7E-21 142.8 26.9 280 346-656 12-313 (325)
185 KOG0322 G-protein beta subunit 99.8 4.7E-17 1E-21 151.1 18.5 308 530-944 6-322 (323)
186 KOG1587 Cytoplasmic dynein int 99.8 1.9E-16 4E-21 172.6 26.1 269 327-616 226-517 (555)
187 KOG1188 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 155.5 19.4 274 359-660 42-347 (376)
188 KOG0290 Conserved WD40 repeat- 99.7 8.9E-16 1.9E-20 144.7 24.0 284 338-650 38-357 (364)
189 KOG1517 Guanine nucleotide bin 99.7 6.2E-16 1.3E-20 169.6 25.3 304 453-906 1066-1384(1387)
190 KOG1310 WD40 repeat protein [G 99.7 3.8E-16 8.3E-21 159.3 21.7 247 339-623 45-311 (758)
191 KOG1188 WD40 repeat protein [G 99.7 1.5E-16 3.3E-21 153.5 17.5 291 467-793 42-345 (376)
192 PRK11028 6-phosphogluconolacto 99.7 4.8E-15 1E-19 159.5 30.6 283 511-860 5-304 (330)
193 KOG0644 Uncharacterized conser 99.7 1.3E-17 2.9E-22 177.9 10.3 284 574-943 180-466 (1113)
194 KOG2110 Uncharacterized conser 99.7 2.5E-14 5.5E-19 140.0 31.9 239 406-661 5-250 (391)
195 KOG1587 Cytoplasmic dynein int 99.7 2.4E-15 5.1E-20 164.0 27.2 249 405-661 241-518 (555)
196 PRK11028 6-phosphogluconolacto 99.7 2E-14 4.4E-19 154.7 33.9 272 358-659 3-304 (330)
197 KOG4497 Uncharacterized conser 99.7 3.1E-16 6.7E-21 150.1 16.6 305 543-944 13-390 (447)
198 KOG1007 WD repeat protein TSSC 99.7 2.8E-15 6E-20 141.2 22.3 223 427-660 39-290 (370)
199 KOG4227 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 148.2 21.5 254 400-661 50-324 (609)
200 KOG1832 HIV-1 Vpr-binding prot 99.7 3.1E-17 6.6E-22 175.8 9.7 341 169-648 1013-1378(1516)
201 KOG1240 Protein kinase contain 99.7 5.5E-15 1.2E-19 165.1 27.2 256 401-662 1043-1337(1431)
202 KOG1517 Guanine nucleotide bin 99.7 2.6E-15 5.7E-20 164.8 23.7 285 402-693 1060-1367(1387)
203 KOG1912 WD40 repeat protein [G 99.7 3.4E-14 7.3E-19 151.2 30.5 463 406-944 15-550 (1062)
204 PRK01742 tolB translocation pr 99.7 4.4E-15 9.6E-20 164.6 25.0 235 366-640 183-426 (429)
205 KOG1523 Actin-related protein 99.7 5E-15 1.1E-19 141.9 20.8 237 343-606 9-269 (361)
206 KOG1007 WD repeat protein TSSC 99.7 3E-15 6.5E-20 141.0 18.8 205 343-571 122-360 (370)
207 KOG2110 Uncharacterized conser 99.7 2.2E-13 4.8E-18 133.5 31.5 193 452-661 6-206 (391)
208 KOG0649 WD40 repeat protein [G 99.7 2.5E-14 5.4E-19 131.5 22.7 236 407-659 11-274 (325)
209 KOG2041 WD40 repeat protein [G 99.7 8.2E-13 1.8E-17 139.3 36.9 512 344-931 14-605 (1189)
210 KOG0290 Conserved WD40 repeat- 99.7 7.3E-15 1.6E-19 138.6 19.4 245 341-605 93-356 (364)
211 PF02239 Cytochrom_D1: Cytochr 99.7 2.9E-13 6.2E-18 144.5 33.3 330 467-912 8-356 (369)
212 KOG1240 Protein kinase contain 99.7 1.5E-14 3.2E-19 161.7 24.1 177 480-661 1034-1227(1431)
213 KOG2111 Uncharacterized conser 99.7 3.8E-13 8.2E-18 129.3 29.9 237 408-661 7-258 (346)
214 PRK01742 tolB translocation pr 99.6 2.8E-14 6.2E-19 158.1 25.8 235 563-926 183-426 (429)
215 KOG0771 Prolactin regulatory e 99.6 3.2E-15 7E-20 149.1 15.8 196 348-571 148-353 (398)
216 PF02239 Cytochrom_D1: Cytochr 99.6 2.4E-13 5.2E-18 145.0 30.8 319 511-944 9-346 (369)
217 KOG1334 WD40 repeat protein [G 99.6 4.3E-15 9.3E-20 150.1 15.9 295 400-744 136-466 (559)
218 KOG2394 WD40 protein DMR-N9 [G 99.6 9.1E-15 2E-19 149.4 18.2 193 724-924 183-383 (636)
219 KOG2139 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 131.9 26.8 283 345-658 99-430 (445)
220 KOG1272 WD40-repeat-containing 99.6 3.8E-15 8.2E-20 149.5 10.7 284 346-668 131-418 (545)
221 KOG2321 WD40 repeat protein [G 99.6 2E-13 4.3E-18 140.8 22.8 283 338-659 45-343 (703)
222 PRK03629 tolB translocation pr 99.6 9.2E-13 2E-17 145.6 29.6 238 367-639 179-427 (429)
223 KOG0771 Prolactin regulatory e 99.6 3.1E-14 6.7E-19 142.2 15.8 196 410-615 148-354 (398)
224 KOG1523 Actin-related protein 99.6 3E-13 6.5E-18 129.9 20.4 234 405-650 9-269 (361)
225 PF04762 IKI3: IKI3 family; I 99.6 8.9E-10 1.9E-14 130.7 54.3 420 405-903 74-564 (928)
226 KOG2139 WD40 repeat protein [G 99.6 1.9E-12 4.1E-17 126.3 25.0 195 452-658 99-308 (445)
227 KOG2315 Predicted translation 99.6 3.2E-12 6.8E-17 132.4 27.8 331 538-944 34-389 (566)
228 KOG2111 Uncharacterized conser 99.5 1.1E-11 2.3E-16 119.4 28.9 239 540-904 7-257 (346)
229 PRK02889 tolB translocation pr 99.5 1.2E-12 2.6E-17 144.9 25.9 225 402-640 191-425 (427)
230 PRK04922 tolB translocation pr 99.5 1.8E-12 3.9E-17 144.2 27.3 238 367-639 184-432 (433)
231 PRK05137 tolB translocation pr 99.5 3.1E-12 6.8E-17 142.5 28.9 222 402-639 197-432 (435)
232 KOG1272 WD40-repeat-containing 99.5 3.9E-14 8.4E-19 142.3 12.1 269 406-697 129-399 (545)
233 PRK03629 tolB translocation pr 99.5 1.9E-12 4E-17 143.2 26.7 260 303-595 149-427 (429)
234 COG5354 Uncharacterized protei 99.5 3.1E-12 6.7E-17 130.7 25.4 351 345-785 33-420 (561)
235 KOG2041 WD40 repeat protein [G 99.5 3.9E-12 8.5E-17 134.3 26.2 482 405-944 13-572 (1189)
236 PRK02889 tolB translocation pr 99.5 1.4E-12 3.1E-17 144.3 24.6 245 318-595 166-424 (427)
237 KOG0974 WD-repeat protein WDR6 99.5 3.1E-11 6.7E-16 134.2 32.4 151 350-528 139-290 (967)
238 KOG2394 WD40 protein DMR-N9 [G 99.5 2.9E-12 6.2E-17 131.4 21.9 252 345-638 124-383 (636)
239 PRK04922 tolB translocation pr 99.5 3.4E-12 7.4E-17 141.9 23.7 227 335-595 194-432 (433)
240 PRK05137 tolB translocation pr 99.5 9.6E-12 2.1E-16 138.6 26.9 260 303-595 151-432 (435)
241 KOG2659 LisH motif-containing 99.5 2.9E-13 6.3E-18 126.3 12.1 169 4-182 25-204 (228)
242 COG4946 Uncharacterized protei 99.5 7E-10 1.5E-14 112.3 36.6 376 318-784 53-508 (668)
243 KOG2315 Predicted translation 99.5 4.1E-11 8.9E-16 124.3 28.4 311 344-698 34-375 (566)
244 KOG0974 WD-repeat protein WDR6 99.5 8.6E-11 1.9E-15 130.8 32.1 279 343-661 6-290 (967)
245 PF10282 Lactonase: Lactonase, 99.5 7.6E-11 1.6E-15 126.7 31.3 311 511-880 2-345 (345)
246 KOG3881 Uncharacterized conser 99.5 9.1E-12 2E-16 123.2 21.8 272 344-640 55-342 (412)
247 COG2706 3-carboxymuconate cycl 99.5 1.7E-10 3.8E-15 114.1 30.7 303 517-881 15-345 (346)
248 KOG3881 Uncharacterized conser 99.4 1.7E-11 3.6E-16 121.4 21.2 244 405-661 54-322 (412)
249 KOG1354 Serine/threonine prote 99.4 2.1E-11 4.6E-16 118.3 20.9 263 343-618 24-362 (433)
250 PF10282 Lactonase: Lactonase, 99.4 4.2E-10 9.2E-15 120.9 33.6 312 554-923 3-345 (345)
251 PF08662 eIF2A: Eukaryotic tra 99.4 1.2E-11 2.5E-16 119.8 18.6 108 831-944 59-178 (194)
252 KOG2314 Translation initiation 99.4 1.8E-10 3.9E-15 118.9 25.8 313 315-661 223-575 (698)
253 KOG2321 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 120.9 23.9 293 492-904 49-344 (703)
254 PRK00178 tolB translocation pr 99.4 2.5E-10 5.5E-15 127.6 29.1 223 402-639 194-427 (430)
255 PF08662 eIF2A: Eukaryotic tra 99.4 6.2E-11 1.3E-15 114.7 20.4 162 409-579 8-185 (194)
256 KOG2314 Translation initiation 99.4 6E-10 1.3E-14 115.1 28.2 315 346-700 212-560 (698)
257 PRK01029 tolB translocation pr 99.4 1.8E-10 3.8E-15 126.8 26.2 243 327-596 167-425 (428)
258 PRK04792 tolB translocation pr 99.4 2.9E-10 6.3E-15 126.3 27.9 223 402-639 213-446 (448)
259 COG2706 3-carboxymuconate cycl 99.4 3.5E-09 7.6E-14 105.0 31.7 315 553-924 5-345 (346)
260 PRK01029 tolB translocation pr 99.4 4.8E-10 1E-14 123.4 28.9 227 402-641 180-426 (428)
261 COG4946 Uncharacterized protei 99.4 1.7E-09 3.7E-14 109.6 29.8 230 353-604 275-507 (668)
262 KOG1354 Serine/threonine prote 99.4 1.2E-10 2.5E-15 113.2 20.7 250 405-662 24-362 (433)
263 TIGR02800 propeller_TolB tol-p 99.3 4E-10 8.6E-15 126.1 27.9 210 402-624 185-405 (417)
264 COG5354 Uncharacterized protei 99.3 9.5E-10 2.1E-14 112.8 27.3 349 522-944 16-394 (561)
265 PRK04792 tolB translocation pr 99.3 2.2E-10 4.8E-15 127.2 25.2 261 302-595 167-446 (448)
266 PRK00178 tolB translocation pr 99.3 2.6E-10 5.7E-15 127.5 25.7 236 327-595 181-427 (430)
267 TIGR02800 propeller_TolB tol-p 99.3 3.1E-10 6.8E-15 127.0 24.1 223 327-581 172-405 (417)
268 PF04762 IKI3: IKI3 family; I 99.3 1.7E-07 3.7E-12 111.6 46.5 446 407-941 22-560 (928)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 7E-09 1.5E-13 107.9 30.5 271 355-661 11-332 (352)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 8E-08 1.7E-12 100.1 37.4 285 518-912 27-339 (352)
271 KOG1409 Uncharacterized conser 99.2 7.9E-10 1.7E-14 107.7 18.5 202 446-661 19-229 (404)
272 KOG1409 Uncharacterized conser 99.2 1.4E-09 3E-14 106.1 19.9 247 339-616 19-271 (404)
273 TIGR03300 assembly_YfgL outer 99.2 1.2E-08 2.6E-13 112.1 29.7 307 508-942 65-376 (377)
274 KOG4547 WD40 repeat-containing 99.2 1.3E-09 2.8E-14 114.4 20.0 193 415-616 2-221 (541)
275 KOG4547 WD40 repeat-containing 99.2 3.7E-09 7.9E-14 111.1 22.5 192 354-572 3-220 (541)
276 KOG4190 Uncharacterized conser 99.1 2.1E-10 4.5E-15 117.9 11.2 245 400-658 729-987 (1034)
277 KOG1064 RAVE (regulator of V-A 99.1 2.4E-10 5.3E-15 133.1 13.0 203 338-583 2202-2409(2439)
278 TIGR03300 assembly_YfgL outer 99.1 5.3E-08 1.2E-12 107.0 30.6 182 467-661 67-261 (377)
279 KOG0280 Uncharacterized conser 99.1 1E-08 2.2E-13 98.0 19.5 250 344-616 69-334 (339)
280 KOG1064 RAVE (regulator of V-A 99.1 4.6E-10 1E-14 130.8 11.8 202 402-626 2204-2409(2439)
281 KOG0280 Uncharacterized conser 99.1 2.2E-08 4.8E-13 95.8 20.0 271 366-661 45-335 (339)
282 KOG1832 HIV-1 Vpr-binding prot 99.0 2.4E-10 5.1E-15 124.0 5.2 218 400-647 1095-1319(1516)
283 PLN02919 haloacid dehalogenase 99.0 2.9E-07 6.4E-12 111.9 32.0 245 410-661 571-890 (1057)
284 KOG0309 Conserved WD40 repeat- 99.0 4E-09 8.7E-14 112.6 13.6 223 386-616 94-340 (1081)
285 KOG0309 Conserved WD40 repeat- 99.0 2.8E-09 6E-14 113.8 12.1 267 282-573 48-340 (1081)
286 COG5170 CDC55 Serine/threonine 99.0 1.8E-08 3.8E-13 96.8 15.4 249 405-671 25-321 (460)
287 KOG4190 Uncharacterized conser 98.9 4.8E-09 1E-13 108.1 11.0 292 338-655 729-1032(1034)
288 PRK04043 tolB translocation pr 98.9 3.5E-07 7.6E-12 100.0 26.2 215 327-574 171-402 (419)
289 PLN02919 haloacid dehalogenase 98.9 8.2E-07 1.8E-11 108.1 31.5 257 348-619 571-892 (1057)
290 PRK11138 outer membrane biogen 98.9 8.4E-07 1.8E-11 97.8 28.6 308 509-945 70-394 (394)
291 PF15492 Nbas_N: Neuroblastoma 98.9 2.7E-06 5.9E-11 82.3 27.0 238 412-669 3-268 (282)
292 KOG4532 WD40-like repeat conta 98.8 9.1E-07 2E-11 83.8 21.6 252 327-616 56-332 (344)
293 PRK04043 tolB translocation pr 98.8 2E-06 4.4E-11 94.1 27.7 198 408-618 189-403 (419)
294 KOG3914 WD repeat protein WDR4 98.8 5.1E-08 1.1E-12 97.8 12.6 167 346-535 64-232 (390)
295 PF15492 Nbas_N: Neuroblastoma 98.8 4.5E-06 9.8E-11 80.9 24.6 255 591-912 3-268 (282)
296 PF07433 DUF1513: Protein of u 98.8 4.9E-06 1.1E-10 83.4 24.9 254 346-653 6-279 (305)
297 COG5170 CDC55 Serine/threonine 98.7 1.2E-07 2.7E-12 91.1 12.5 115 829-944 170-308 (460)
298 KOG4532 WD40-like repeat conta 98.7 1.8E-06 3.8E-11 81.9 19.8 208 327-557 98-321 (344)
299 PRK11138 outer membrane biogen 98.7 1.5E-05 3.2E-10 88.0 30.3 188 467-662 71-277 (394)
300 PF07433 DUF1513: Protein of u 98.7 4.7E-06 1E-10 83.6 23.1 261 589-896 8-278 (305)
301 KOG0882 Cyclophilin-related pe 98.7 1.2E-06 2.5E-11 89.1 18.8 289 341-656 6-369 (558)
302 PF08450 SGL: SMP-30/Gluconola 98.7 2.4E-05 5.2E-10 80.1 28.6 218 411-648 4-244 (246)
303 KOG0396 Uncharacterized conser 98.6 4.4E-07 9.5E-12 90.2 13.5 121 5-126 115-243 (389)
304 PF08450 SGL: SMP-30/Gluconola 98.6 8E-05 1.7E-09 76.2 30.5 221 348-604 3-244 (246)
305 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00017 3.7E-09 68.6 28.8 137 509-654 24-160 (354)
306 KOG3617 WD40 and TPR repeat-co 98.6 9.6E-06 2.1E-10 88.8 22.9 338 409-850 18-374 (1416)
307 KOG4714 Nucleoporin [Nuclear s 98.6 9.4E-07 2E-11 83.4 13.3 209 346-573 38-255 (319)
308 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3E-12 64.4 5.6 39 905-943 1-39 (39)
309 PF13360 PQQ_2: PQQ-like domai 98.5 1.6E-05 3.4E-10 81.2 22.8 219 427-663 2-234 (238)
310 PRK02888 nitrous-oxide reducta 98.5 1.5E-05 3.2E-10 87.5 23.0 101 831-933 320-449 (635)
311 KOG3914 WD repeat protein WDR4 98.5 1.5E-06 3.3E-11 87.5 14.2 166 408-581 64-232 (390)
312 KOG2695 WD40 repeat protein [G 98.5 2.3E-07 4.9E-12 91.0 8.0 167 348-538 215-388 (425)
313 KOG1645 RING-finger-containing 98.5 7.8E-06 1.7E-10 82.2 18.7 248 401-659 188-461 (463)
314 PF10607 CLTH: CTLH/CRA C-term 98.5 3.9E-07 8.4E-12 84.2 9.0 133 38-181 5-140 (145)
315 KOG1920 IkappaB kinase complex 98.5 3.5E-05 7.7E-10 88.6 25.5 277 345-658 69-364 (1265)
316 KOG2695 WD40 repeat protein [G 98.5 4.1E-07 9E-12 89.2 8.3 164 456-627 216-388 (425)
317 KOG1897 Damage-specific DNA bi 98.5 0.0064 1.4E-07 69.2 44.7 554 339-941 301-894 (1096)
318 PF13360 PQQ_2: PQQ-like domai 98.5 7.2E-05 1.6E-09 76.3 24.8 221 366-622 2-237 (238)
319 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00015 3.3E-09 78.4 27.9 296 353-694 1-344 (353)
320 PF06433 Me-amine-dh_H: Methyl 98.4 0.00038 8.2E-09 71.0 28.4 137 518-661 17-167 (342)
321 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0011 2.4E-08 63.2 29.0 143 352-523 18-162 (354)
322 PF00400 WD40: WD domain, G-be 98.4 7.4E-07 1.6E-11 60.8 6.2 39 862-901 1-39 (39)
323 KOG3617 WD40 and TPR repeat-co 98.4 7.8E-06 1.7E-10 89.5 16.2 334 542-894 19-376 (1416)
324 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00029 6.3E-09 76.2 28.7 304 547-933 1-345 (353)
325 KOG4714 Nucleoporin [Nuclear s 98.4 4.5E-06 9.8E-11 78.9 12.4 162 342-527 87-255 (319)
326 KOG0882 Cyclophilin-related pe 98.4 3.2E-06 6.9E-11 86.1 11.7 211 449-668 7-239 (558)
327 KOG3621 WD40 repeat-containing 98.3 9.6E-05 2.1E-09 80.3 22.5 283 343-662 32-356 (726)
328 KOG1897 Damage-specific DNA bi 98.3 0.011 2.5E-07 67.3 39.0 296 343-661 529-858 (1096)
329 KOG1920 IkappaB kinase complex 98.3 0.00013 2.9E-09 84.1 24.5 243 405-661 67-324 (1265)
330 KOG2066 Vacuolar assembly/sort 98.3 2.1E-05 4.5E-10 86.4 17.1 181 344-572 39-233 (846)
331 KOG2114 Vacuolar assembly/sort 98.3 0.00015 3.2E-09 80.5 23.4 204 351-584 30-256 (933)
332 PF06433 Me-amine-dh_H: Methyl 98.3 0.00055 1.2E-08 69.8 25.1 268 367-668 17-328 (342)
333 KOG2114 Vacuolar assembly/sort 98.3 0.00023 5E-09 79.1 23.5 200 413-624 30-252 (933)
334 KOG1645 RING-finger-containing 98.2 9.1E-05 2E-09 74.8 17.9 247 339-615 188-461 (463)
335 PF08513 LisH: LisH; InterPro 98.2 2.6E-06 5.7E-11 51.2 4.1 27 6-32 1-27 (27)
336 PRK02888 nitrous-oxide reducta 98.2 0.00041 8.8E-09 76.6 23.6 286 356-660 65-405 (635)
337 cd00216 PQQ_DH Dehydrogenases 98.2 0.0016 3.4E-08 73.7 29.4 110 509-625 62-193 (488)
338 KOG1275 PAB-dependent poly(A) 98.2 4.7E-05 1E-09 84.6 15.7 184 467-658 149-341 (1118)
339 PF14583 Pectate_lyase22: Olig 98.1 0.0029 6.3E-08 66.0 27.2 227 412-650 41-303 (386)
340 PF14583 Pectate_lyase22: Olig 98.1 0.0077 1.7E-07 62.9 29.6 278 351-658 42-380 (386)
341 KOG2066 Vacuolar assembly/sort 98.1 7.5E-05 1.6E-09 82.2 14.8 185 451-659 39-233 (846)
342 smart00668 CTLH C-terminal to 98.0 3.4E-06 7.4E-11 63.5 3.1 52 38-90 5-56 (58)
343 PF11768 DUF3312: Protein of u 98.0 0.0028 6.2E-08 68.4 25.7 95 830-927 258-369 (545)
344 smart00667 LisH Lissencephaly 98.0 8.2E-06 1.8E-10 53.4 4.4 32 4-35 2-33 (34)
345 KOG1275 PAB-dependent poly(A) 98.0 0.0001 2.2E-09 82.1 15.1 181 417-613 146-340 (1118)
346 PF02897 Peptidase_S9_N: Proly 98.0 0.0078 1.7E-07 67.1 30.2 249 346-621 125-410 (414)
347 PF04053 Coatomer_WDAD: Coatom 98.0 0.0015 3.2E-08 71.5 23.2 224 402-660 28-263 (443)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.048 1E-06 62.0 35.7 111 509-625 70-199 (527)
349 KOG1008 Uncharacterized conser 97.9 3.3E-06 7.3E-11 89.9 2.0 205 344-572 56-275 (783)
350 PF08596 Lgl_C: Lethal giant l 97.9 0.0036 7.8E-08 67.6 24.9 241 408-658 3-334 (395)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0048 1E-07 66.6 25.8 251 346-603 3-324 (395)
352 cd00216 PQQ_DH Dehydrogenases 97.9 0.0054 1.2E-07 69.4 27.0 272 360-664 64-429 (488)
353 PF11768 DUF3312: Protein of u 97.9 0.00011 2.5E-09 78.8 12.3 79 338-438 253-331 (545)
354 PF06977 SdiA-regulated: SdiA- 97.8 0.0031 6.7E-08 62.9 20.5 190 344-556 21-239 (248)
355 COG0823 TolB Periplasmic compo 97.8 0.0018 3.8E-08 70.7 19.1 204 327-558 175-389 (425)
356 PF04053 Coatomer_WDAD: Coatom 97.7 0.0042 9.1E-08 68.0 21.4 220 343-616 31-263 (443)
357 COG0823 TolB Periplasmic compo 97.7 0.0022 4.7E-08 69.9 18.4 190 405-605 191-389 (425)
358 KOG2817 Predicted E3 ubiquitin 97.7 0.00036 7.9E-09 71.1 11.1 110 6-117 117-239 (394)
359 PF06977 SdiA-regulated: SdiA- 97.6 0.06 1.3E-06 53.9 25.8 204 446-656 16-247 (248)
360 PF04841 Vps16_N: Vps16, N-ter 97.6 0.063 1.4E-06 59.0 27.7 68 831-901 216-285 (410)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.15 3.1E-06 58.1 30.6 285 360-666 72-497 (527)
362 PF00780 CNH: CNH domain; Int 97.5 0.084 1.8E-06 55.0 27.0 229 416-671 5-266 (275)
363 PF04841 Vps16_N: Vps16, N-ter 97.5 0.12 2.6E-06 56.8 28.8 168 476-659 62-246 (410)
364 PF02897 Peptidase_S9_N: Proly 97.5 0.1 2.2E-06 58.2 29.1 245 407-662 124-407 (414)
365 KOG1008 Uncharacterized conser 97.5 4.1E-05 8.8E-10 81.9 1.5 190 495-690 57-256 (783)
366 KOG3621 WD40 repeat-containing 97.5 0.0089 1.9E-07 65.6 18.7 123 580-703 28-150 (726)
367 COG3391 Uncharacterized conser 97.5 0.17 3.7E-06 55.2 29.4 266 346-639 32-308 (381)
368 PF00780 CNH: CNH domain; Int 97.4 0.093 2E-06 54.7 26.1 142 507-661 6-167 (275)
369 COG3391 Uncharacterized conser 97.4 0.2 4.3E-06 54.7 29.2 240 408-661 32-285 (381)
370 COG3490 Uncharacterized protei 97.4 0.06 1.3E-06 52.7 21.2 261 346-658 69-347 (366)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.0075 1.6E-07 64.7 16.9 94 411-504 6-118 (415)
372 COG3490 Uncharacterized protei 97.4 0.055 1.2E-06 53.0 20.6 266 589-901 71-346 (366)
373 COG3386 Gluconolactonase [Carb 97.3 0.12 2.6E-06 53.8 24.1 240 592-892 31-274 (307)
374 COG3386 Gluconolactonase [Carb 97.3 0.084 1.8E-06 54.9 22.7 222 351-604 31-274 (307)
375 smart00320 WD40 WD40 repeats. 97.2 0.00076 1.6E-08 45.1 5.0 39 905-943 2-40 (40)
376 PF03178 CPSF_A: CPSF A subuni 97.2 0.069 1.5E-06 57.1 22.4 214 367-611 2-261 (321)
377 KOG4640 Anaphase-promoting com 97.2 0.0017 3.6E-08 70.2 9.0 94 345-461 21-115 (665)
378 KOG4640 Anaphase-promoting com 97.1 0.0018 3.9E-08 69.9 9.0 92 831-924 20-114 (665)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.44 9.5E-06 51.5 26.3 84 539-626 308-409 (415)
380 PF08553 VID27: VID27 cytoplas 97.0 0.013 2.7E-07 67.8 15.4 69 765-859 578-646 (794)
381 PF05694 SBP56: 56kDa selenium 96.9 0.072 1.6E-06 56.3 18.3 242 507-784 86-393 (461)
382 smart00320 WD40 WD40 repeats. 96.9 0.0022 4.7E-08 42.8 5.2 39 862-901 2-40 (40)
383 PF03178 CPSF_A: CPSF A subuni 96.8 0.15 3.2E-06 54.5 20.8 175 476-659 3-202 (321)
384 PRK13616 lipoprotein LpqB; Pro 96.7 0.024 5.1E-07 64.8 14.4 148 765-944 350-524 (591)
385 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.7 0.0018 4E-08 58.0 4.5 79 71-149 28-113 (133)
386 PF04494 TFIID_90kDa: WD40 ass 96.7 0.0015 3.3E-08 59.3 4.0 79 71-149 39-124 (142)
387 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.091 2E-06 44.2 13.9 102 409-521 2-109 (111)
388 KOG4441 Proteins containing BT 96.7 0.16 3.4E-06 58.3 20.9 235 417-661 284-548 (571)
389 KOG2395 Protein involved in va 96.6 0.044 9.5E-07 58.3 13.8 139 510-658 348-499 (644)
390 PRK10115 protease 2; Provision 96.5 2.7 6E-05 49.7 32.7 243 407-661 127-396 (686)
391 PF05694 SBP56: 56kDa selenium 96.5 0.28 6E-06 52.1 18.7 206 355-574 86-344 (461)
392 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.097 2.1E-06 44.1 12.3 102 347-478 2-109 (111)
393 KOG2079 Vacuolar assembly/sort 96.4 0.0093 2E-07 68.6 7.9 100 842-944 98-202 (1206)
394 PRK10115 protease 2; Provision 96.3 3.5 7.5E-05 48.9 34.7 242 346-618 128-397 (686)
395 KOG2395 Protein involved in va 96.3 0.05 1.1E-06 57.9 12.2 144 417-572 344-500 (644)
396 PRK13616 lipoprotein LpqB; Pro 96.2 0.42 9E-06 54.9 20.3 190 450-654 348-563 (591)
397 PF12894 Apc4_WD40: Anaphase-p 96.2 0.014 3.1E-07 40.7 5.3 33 344-378 11-43 (47)
398 PHA02713 hypothetical protein; 96.2 0.43 9.3E-06 55.0 20.6 219 429-661 273-535 (557)
399 PF08553 VID27: VID27 cytoplas 96.1 0.13 2.8E-06 59.8 15.7 145 463-614 492-646 (794)
400 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.2E-07 39.6 5.8 33 406-439 11-43 (47)
401 PF14727 PHTB1_N: PTHB1 N-term 96.0 3.1 6.8E-05 45.2 33.7 273 354-661 34-362 (418)
402 KOG4441 Proteins containing BT 96.0 1.1 2.4E-05 51.6 22.3 233 359-619 287-550 (571)
403 PHA02713 hypothetical protein; 95.9 0.55 1.2E-05 54.1 19.8 195 417-621 303-539 (557)
404 TIGR03074 PQQ_membr_DH membran 95.9 5.4 0.00012 47.4 41.0 197 467-663 196-481 (764)
405 KOG4499 Ca2+-binding protein R 95.9 0.94 2E-05 43.4 17.1 99 768-882 161-263 (310)
406 KOG2444 WD40 repeat protein [G 95.9 0.02 4.3E-07 54.4 6.2 102 843-944 70-176 (238)
407 PF10647 Gmad1: Lipoprotein Lp 95.8 0.29 6.4E-06 49.8 15.0 100 587-694 25-128 (253)
408 KOG2079 Vacuolar assembly/sort 95.7 0.16 3.4E-06 59.1 13.8 103 417-525 98-202 (1206)
409 PF07995 GSDH: Glucose / Sorbo 95.6 3.6 7.9E-05 43.9 23.2 58 597-654 271-330 (331)
410 PF14727 PHTB1_N: PTHB1 N-term 95.5 3.8 8.3E-05 44.6 22.8 191 727-941 146-356 (418)
411 TIGR03118 PEPCTERM_chp_1 conse 95.4 3.4 7.4E-05 41.8 21.3 260 632-925 25-307 (336)
412 PF15390 DUF4613: Domain of un 95.4 5.5 0.00012 44.0 26.6 153 452-616 20-187 (671)
413 PF10647 Gmad1: Lipoprotein Lp 95.4 3.3 7.1E-05 42.2 21.0 150 346-517 25-186 (253)
414 PF02333 Phytase: Phytase; In 95.4 4.7 0.0001 42.9 22.3 188 467-661 70-292 (381)
415 TIGR03074 PQQ_membr_DH membran 95.3 4.1 8.9E-05 48.4 24.1 157 467-624 262-486 (764)
416 KOG4499 Ca2+-binding protein R 95.3 2.1 4.5E-05 41.1 17.2 101 497-603 160-272 (310)
417 KOG2444 WD40 repeat protein [G 95.3 0.061 1.3E-06 51.2 7.2 99 360-481 73-175 (238)
418 PF05096 Glu_cyclase_2: Glutam 95.2 4 8.6E-05 40.9 22.2 185 406-605 44-250 (264)
419 COG3204 Uncharacterized protei 95.1 2.6 5.7E-05 42.3 17.9 120 538-661 85-212 (316)
420 COG3292 Predicted periplasmic 95.0 7.1 0.00015 42.9 23.2 311 343-693 163-479 (671)
421 PF15390 DUF4613: Domain of un 94.8 8.1 0.00018 42.8 29.7 115 539-659 57-186 (671)
422 PF05096 Glu_cyclase_2: Glutam 94.7 5.3 0.00012 40.0 23.7 185 452-649 45-250 (264)
423 TIGR03118 PEPCTERM_chp_1 conse 94.6 5.9 0.00013 40.1 23.4 204 453-662 24-282 (336)
424 PF12234 Rav1p_C: RAVE protein 94.6 0.96 2.1E-05 51.4 15.4 112 453-572 31-156 (631)
425 PHA03098 kelch-like protein; P 94.5 2.1 4.5E-05 49.6 18.9 151 507-661 342-513 (534)
426 PF10168 Nup88: Nuclear pore c 94.3 9.2 0.0002 45.1 23.3 98 406-529 84-182 (717)
427 KOG2377 Uncharacterized conser 94.3 6.1 0.00013 42.0 19.0 117 342-478 64-180 (657)
428 KOG2280 Vacuolar assembly/sort 94.3 8.7 0.00019 43.7 21.4 177 408-595 85-269 (829)
429 KOG1898 Splicing factor 3b, su 94.1 17 0.00036 43.2 33.0 100 838-942 940-1045(1205)
430 PHA03098 kelch-like protein; P 94.0 2.7 5.8E-05 48.7 18.6 193 416-619 293-515 (534)
431 PF10168 Nup88: Nuclear pore c 93.9 5.7 0.00012 46.8 20.4 35 631-665 148-185 (717)
432 COG3204 Uncharacterized protei 93.7 8.5 0.00018 38.8 21.6 170 447-625 81-272 (316)
433 COG4590 ABC-type uncharacteriz 93.5 2.2 4.8E-05 45.0 14.2 159 763-944 219-385 (733)
434 KOG2280 Vacuolar assembly/sort 93.2 8.2 0.00018 44.0 18.8 197 427-640 63-270 (829)
435 KOG3630 Nuclear pore complex, 93.0 1.7 3.7E-05 51.3 13.9 97 833-932 157-260 (1405)
436 KOG4659 Uncharacterized conser 93.0 28 0.0006 42.5 30.2 23 763-785 660-682 (1899)
437 PRK13684 Ycf48-like protein; P 92.9 15 0.00032 39.3 31.8 278 344-658 45-330 (334)
438 PF12234 Rav1p_C: RAVE protein 92.7 1.2 2.5E-05 50.8 12.0 112 346-481 31-154 (631)
439 KOG1916 Nuclear protein, conta 92.6 0.26 5.5E-06 56.1 6.7 126 343-494 131-282 (1283)
440 TIGR02604 Piru_Ver_Nterm putat 92.3 3.1 6.8E-05 45.2 14.7 107 345-471 14-142 (367)
441 PF08728 CRT10: CRT10; InterP 92.1 12 0.00026 43.4 19.0 165 356-525 49-245 (717)
442 PF10313 DUF2415: Uncharacteri 92.1 0.48 1E-05 32.0 4.9 32 345-376 1-34 (43)
443 PHA02790 Kelch-like protein; P 91.8 9.1 0.0002 43.4 18.2 148 507-661 318-472 (480)
444 PHA02790 Kelch-like protein; P 91.6 7.3 0.00016 44.1 17.2 186 417-617 271-472 (480)
445 KOG1916 Nuclear protein, conta 91.6 0.17 3.7E-06 57.5 3.9 145 736-908 153-328 (1283)
446 PF12657 TFIIIC_delta: Transcr 91.0 1.4 3E-05 41.9 9.0 31 407-437 86-122 (173)
447 COG3823 Glutamine cyclotransfe 91.0 4.6 0.0001 38.2 11.7 147 507-661 55-206 (262)
448 COG5167 VID27 Protein involved 90.9 4.5 9.6E-05 43.6 13.0 136 513-659 485-632 (776)
449 PF07995 GSDH: Glucose / Sorbo 90.8 26 0.00055 37.5 26.9 103 453-558 3-133 (331)
450 TIGR02604 Piru_Ver_Nterm putat 90.6 8 0.00017 42.1 15.7 101 832-936 72-204 (367)
451 PF10313 DUF2415: Uncharacteri 90.5 0.78 1.7E-05 31.1 4.7 32 873-904 1-34 (43)
452 PRK13684 Ycf48-like protein; P 90.3 28 0.00061 37.2 29.1 267 406-696 45-321 (334)
453 KOG2247 WD40 repeat-containing 89.8 0.18 3.8E-06 53.5 1.9 115 342-481 72-186 (615)
454 PF14870 PSII_BNR: Photosynthe 89.8 28 0.0006 36.3 30.8 265 406-693 16-291 (302)
455 PF13449 Phytase-like: Esteras 89.4 24 0.00052 37.6 17.7 158 764-931 19-230 (326)
456 PF07676 PD40: WD40-like Beta 89.4 1.5 3.3E-05 29.2 5.7 32 341-372 5-38 (39)
457 COG4257 Vgb Streptogramin lyas 89.0 26 0.00057 35.0 23.2 246 584-905 60-307 (353)
458 PF11725 AvrE: Pathogenicity f 89.0 77 0.0017 40.3 22.8 148 343-527 361-517 (1774)
459 COG4590 ABC-type uncharacteriz 88.8 2.8 6E-05 44.3 9.5 161 447-619 216-390 (733)
460 PF08728 CRT10: CRT10; InterP 88.7 11 0.00024 43.7 14.9 110 833-944 102-245 (717)
461 COG5167 VID27 Protein involved 88.1 20 0.00044 38.8 15.3 151 454-614 469-631 (776)
462 PF07569 Hira: TUP1-like enhan 88.0 2.2 4.7E-05 42.2 8.1 60 884-944 21-94 (219)
463 KOG3630 Nuclear pore complex, 87.6 6.2 0.00014 47.0 12.2 145 453-603 102-261 (1405)
464 PF11725 AvrE: Pathogenicity f 87.3 50 0.0011 41.9 19.8 73 825-901 697-770 (1774)
465 KOG1898 Splicing factor 3b, su 87.3 39 0.00084 40.4 18.0 175 476-659 854-1048(1205)
466 PF14761 HPS3_N: Hermansky-Pud 87.1 22 0.00048 34.4 13.6 50 598-650 29-80 (215)
467 PF12657 TFIIIC_delta: Transcr 87.0 2.8 6E-05 39.8 8.0 29 916-944 86-120 (173)
468 PRK14131 N-acetylneuraminic ac 87.0 51 0.0011 36.0 20.6 21 417-437 38-59 (376)
469 PF13449 Phytase-like: Esteras 86.8 47 0.001 35.4 21.3 106 587-694 21-163 (326)
470 COG5290 IkappaB kinase complex 86.5 22 0.00047 40.8 15.0 99 767-888 249-352 (1243)
471 TIGR03548 mutarot_permut cycli 86.5 49 0.0011 35.2 21.7 71 507-577 123-199 (323)
472 COG5276 Uncharacterized conser 86.5 39 0.00085 34.2 27.6 328 446-904 36-370 (370)
473 PF14870 PSII_BNR: Photosynthe 86.4 45 0.00098 34.7 33.1 281 342-656 14-301 (302)
474 KOG1900 Nuclear pore complex, 86.2 9.7 0.00021 46.4 13.1 166 334-527 68-273 (1311)
475 KOG1983 Tomosyn and related SN 86.0 18 0.00039 44.6 15.9 71 538-619 198-268 (993)
476 PF14761 HPS3_N: Hermansky-Pud 86.0 20 0.00042 34.7 12.7 60 833-894 19-80 (215)
477 PF07569 Hira: TUP1-like enhan 85.9 4.8 0.0001 39.8 9.1 73 352-438 18-97 (219)
478 PF10395 Utp8: Utp8 family; I 85.8 75 0.0016 36.8 21.0 166 406-581 129-314 (670)
479 KOG2247 WD40 repeat-containing 84.8 0.17 3.7E-06 53.6 -1.5 143 765-937 35-180 (615)
480 PF14781 BBS2_N: Ciliary BBSom 84.4 29 0.00062 30.7 12.6 113 412-527 4-126 (136)
481 KOG2377 Uncharacterized conser 83.4 71 0.0015 34.5 22.3 139 412-557 28-172 (657)
482 KOG4460 Nuclear pore complex, 83.3 55 0.0012 35.9 15.7 104 406-536 103-208 (741)
483 TIGR02276 beta_rpt_yvtn 40-res 83.2 4 8.7E-05 27.5 5.3 39 841-880 1-41 (42)
484 KOG3616 Selective LIM binding 83.0 40 0.00086 38.4 15.0 78 405-490 13-90 (1636)
485 COG4257 Vgb Streptogramin lyas 82.5 57 0.0012 32.8 20.2 229 408-661 63-307 (353)
486 COG3823 Glutamine cyclotransfe 80.3 57 0.0012 31.3 14.7 171 467-646 58-245 (262)
487 COG1520 FOG: WD40-like repeat 80.0 96 0.0021 33.8 23.4 225 418-657 68-303 (370)
488 PF07250 Glyoxal_oxid_N: Glyox 79.8 23 0.0005 35.4 11.1 138 521-661 49-199 (243)
489 KOG2063 Vacuolar assembly/sort 78.7 1E+02 0.0022 37.2 17.4 77 354-440 24-100 (877)
490 COG5290 IkappaB kinase complex 78.6 1.4E+02 0.003 34.8 21.3 97 542-642 250-349 (1243)
491 PF12768 Rax2: Cortical protei 78.5 47 0.001 34.2 13.2 82 429-515 17-109 (281)
492 PLN02153 epithiospecifier prot 78.4 1E+02 0.0022 33.1 21.9 56 564-619 217-288 (341)
493 TIGR03548 mutarot_permut cycli 78.2 99 0.0021 32.9 19.2 110 508-620 73-199 (323)
494 PF12768 Rax2: Cortical protei 77.8 20 0.00042 36.9 10.3 70 853-924 17-97 (281)
495 TIGR03606 non_repeat_PQQ dehyd 77.4 70 0.0015 35.5 14.9 63 342-418 27-90 (454)
496 smart00757 CRA CT11-RanBPM. pr 77.1 12 0.00025 31.5 7.3 85 89-182 2-90 (99)
497 PF09398 FOP_dimer: FOP N term 76.8 4.1 8.9E-05 32.3 3.9 31 7-37 20-50 (81)
498 TIGR03547 muta_rot_YjhT mutatr 76.5 1.2E+02 0.0025 32.7 20.3 20 417-436 17-37 (346)
499 COG3292 Predicted periplasmic 75.4 1.4E+02 0.0031 33.4 24.1 138 406-555 164-306 (671)
500 PF05935 Arylsulfotrans: Aryls 75.3 1.5E+02 0.0033 33.6 21.0 155 467-627 117-313 (477)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-73 Score=551.03 Aligned_cols=490 Identities=21% Similarity=0.316 Sum_probs=413.9
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC---HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (945)
+.|++||+.|+|+.+||.+|+.+||.|||+.+. ...|.+.|+.|+|++++..+..+. .+++....++.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 569999999999999999999999999999886 899999999999999999998873 4445556679999999999
Q ss_pred hHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCccccccc
Q 002264 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL 161 (945)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (945)
||++..|....|+.+||++..++ .++.+++++|++-+..++-....+...-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999999 478999999998776554322222111112457799999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCC
Q 002264 162 AFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPT 241 (945)
Q Consensus 162 ~~~~~p~~rL~~ll~q~~~~q~~~c~~~~~~~~~~~l~~~h~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~f~~~ 241 (945)
+|++||++||+||++||++.|.|||+ .+..|||.||.|.+.+ +|. .+.+++.
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~q-----ip~----------qt~qil~-------- 221 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQ-----IPS----------QTWQILQ-------- 221 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCccc-----CCc----------hhhhhHh--------
Confidence 99999999999999999999999994 7789999999999966 322 1222222
Q ss_pred cccccchhhhhhcccCCCCCccccccccCCCCCCCCCccccccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeec
Q 002264 242 AAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYS 321 (945)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 321 (945)
T Consensus 222 -------------------------------------------------------------------------------- 221 (519)
T KOG0293|consen 222 -------------------------------------------------------------------------------- 221 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccc
Q 002264 322 SSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (945)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (945)
.|+++|+.+.||++|+| ||+++.|.+..||++.....+. ..+.
T Consensus 222 --------------------~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l~~t 264 (519)
T KOG0293|consen 222 --------------------DHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------LKKT 264 (519)
T ss_pred --------------------hCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------eeee
Confidence 36668999999999996 9999999999999986544321 1256
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.+|..+|..+.||||.++|++|+.|..+++||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 88999999999999999999999999999999999998776332 24668999999999999 899999999999999
Q ss_pred CCCceEEEecCCC-CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+|..+..+.+-. ..|.+++..+ ||+++++.+.|..|++++.++...+.. .....+|+++++|.|++++++.-.
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~-- 415 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ-- 415 (519)
T ss_pred CCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc--
Confidence 9998888887754 4589999866 779999999999999999877655543 344567999999999999998875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcc--eEEEEEc-CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKS--NGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
+..+++||+...+.++.+.||.... |. -+|. .+..++++|++|+.|+||+..+|+++..+.+|.. .|++|+|
T Consensus 416 --~qei~LWDl~e~~lv~kY~Ghkq~~fiIr-SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVsw 490 (519)
T KOG0293|consen 416 --DQEIHLWDLEENKLVRKYFGHKQGHFIIR-SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSW 490 (519)
T ss_pred --cCeeEEeecchhhHHHHhhcccccceEEE-eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEec
Confidence 8889999999999999999998743 33 3444 3458999999999999999999999999988764 8999999
Q ss_pred cC-CCCEEEEEECCCcEEEEECCC
Q 002264 638 SK-EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 638 sp-~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+| +..++|++++||+||||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 678999999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.6e-65 Score=477.33 Aligned_cols=488 Identities=20% Similarity=0.326 Sum_probs=406.5
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (945)
+.||||||.|||+|+.++++.++||+|+++++| ++.|.+.|.+|+||.++..++.| .+|+. -+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 569999999999999999999999999999998 89999999999999999999999 45544 578999999
Q ss_pred HhHhhccCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCcccc
Q 002264 81 YLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFR 158 (945)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (945)
.|||+|.++...|..+||+. +.-|+..+|++|.+|+.||..+.|++.+.+.+ ...++.|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999974 44467779999999999999999999888654 23455668888888777665
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCC
Q 002264 159 DKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPF 238 (945)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~q~~~c~~~~~~~~~~~l~~~h~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~f 238 (945)
+||+||+.||+||++||..+ |.+|++.++| .|
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------LF 186 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------LF 186 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------ec
Confidence 99999999999999999875 6677777775 67
Q ss_pred CCCcccccchhhhhhcccCCCCCccccccccCCCCCCCCCccccccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcce
Q 002264 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEV 318 (945)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 318 (945)
|+.+ +.. +.. .-..|+.
T Consensus 187 RGkA-A~K------------------~~~----Ee~~Pt~---------------------------------------- 203 (508)
T KOG0275|consen 187 RGKA-AMK------------------DQE----EERYPTQ---------------------------------------- 203 (508)
T ss_pred cchh-hhh------------------hhH----hhhchHH----------------------------------------
Confidence 7663 001 000 0000110
Q ss_pred eecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccc
Q 002264 319 TYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQ 398 (945)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (945)
-.....++.++.+.|..|||||+| |++|+.||.|.+||+.+|+......++.
T Consensus 204 ----------------l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA----------- 255 (508)
T KOG0275|consen 204 ----------------LARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA----------- 255 (508)
T ss_pred ----------------hhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh-----------
Confidence 001223455668999999999996 9999999999999999998775433321
Q ss_pred cccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 399 ~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
...+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++. +. +|+..|+|+.|+.|+. .+++++.|.++
T Consensus 256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiLS~sfD~tv 330 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QILSASFDQTV 330 (508)
T ss_pred hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhhcccccceE
Confidence 123556889999999999999999999999999999999999984 44 8999999999999999 79999999999
Q ss_pred EEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCC-CEE
Q 002264 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADG-SRL 553 (945)
Q Consensus 478 ~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~-~~l 553 (945)
++.- .+|+++..+++|.+.|+...|.+ +|..+++++.||+|++|+..+.++..++...+ .+|+++..-|.+ ..+
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence 9999 99999999999999999999865 77899999999999999999999888776544 377888777744 466
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccC--cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
++|.. .+++++.++. |+.++.|..... +..-+.+++|.|.++++.++|+.++.|...+|.+...+..|.. .
T Consensus 409 iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--d 481 (508)
T KOG0275|consen 409 IVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--D 481 (508)
T ss_pred EEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--c
Confidence 66653 7789998874 677777764332 2355678999999999999999999999999999999988765 7
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
+..++-+|..+.+|+-+.||.+++|.
T Consensus 482 vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999995
No 3
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5e-52 Score=416.27 Aligned_cols=551 Identities=15% Similarity=0.235 Sum_probs=414.0
Q ss_pred eeecCCCCc-cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcc
Q 002264 318 VTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396 (945)
Q Consensus 318 v~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 396 (945)
+.|+.+..- +-++++. .......+|...++-..|||.|-| +|+|...|+|+|||....+.+....
T Consensus 33 ilY~nGksv~ir~i~~~-~~~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKne------------ 98 (603)
T KOG0318|consen 33 ILYTNGKSVIIRNIDNP-ASVDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNE------------ 98 (603)
T ss_pred EEEeCCCEEEEEECCCc-cceeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeee------------
Confidence 444443332 4444432 335555679999999999999985 9999999999999987755554333
Q ss_pred cccccccCCCccEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 397 ~~~~~~~~h~~~V~~i~~s~~g~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
++--.++|..++|++|++.|++.++ +...+++-.++|..+. .+.+|...|.+++|-|.... +++||+.|
T Consensus 99 -----f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdD 169 (603)
T KOG0318|consen 99 -----FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDD 169 (603)
T ss_pred -----eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCC
Confidence 3335679999999999999887764 3334444445666555 78899999999999998887 89999999
Q ss_pred CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEEcCCC
Q 002264 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADG 550 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~ 550 (945)
++|.+|+ ..-+-..++..|...|+|+.|+| ||.++++.+.||++.+||-.+++....+. .|.+.|.+++|+||+
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs 247 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS 247 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC
Confidence 9999999 77777788899999999999987 67899999999999999999999998887 788899999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccC---cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
+.+++++. |.++++||+.+.++++++..... ..+. +-|. ...|++.+.+|.|.+++......+..+.+|.
T Consensus 248 ~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 248 TQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred ceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 99999996 99999999999999998875433 1233 3344 5689999999999999999999888888765
Q ss_pred CCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 628 ~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
. .|++++.+||+++|++|+.||.|.-|+..++......-.+| ...|..++.+..+.++-.++.+....+....
T Consensus 321 K--~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-----~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 321 K--SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-----TNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred c--ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-----cceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 4 89999999999999999999999999998884332222333 3457777777766665555444333321111
Q ss_pred C-CCCCCccc----CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEe
Q 002264 708 P-VRPSPIIN----GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (945)
Q Consensus 708 ~-~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 782 (945)
. ......+. ........++..++.... ..|.+..- ...+..+. -.-...+++++|+++.++.+
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~-~~iv~l~~-----~~~~~~~~------~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI-SDIVLLQD-----QTKVSSIP------IGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEec-CcEEEEec-----CCcceeec------cccccceEEEcCCCCEEEEe
Confidence 1 00000000 001122222222222222 22222221 11111111 23456889999999999999
Q ss_pred eecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC
Q 002264 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (945)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~ 861 (945)
+.||.+++|.+.......... +. .|.++|++++||||+.+||++. .+++.+||+.+
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~---------------------~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAK---------------------LL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred cccceEEEEEecCCcccceee---------------------ee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 999999999875433211111 11 2899999999999999999999 89999999998
Q ss_pred ceEEEEec-CCCCCeeEEEeecCCCceEEEeecCceEEEEecccc-eEEEEecCCCcceeEEEecCCcceeeeecCCceE
Q 002264 862 FKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939 (945)
Q Consensus 862 ~~~~~~~~-~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i 939 (945)
.+.....- -|+..|.|++|+| ++..+|+|+-|-+|.||++... +.+....+|...|+.|.|- |...|+|.|.|..|
T Consensus 519 ~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~i 596 (603)
T KOG0318|consen 519 REVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANI 596 (603)
T ss_pred CceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCccee
Confidence 87743333 3999999999999 9999999999999999999864 3455667899999999998 45789999999999
Q ss_pred EEEec
Q 002264 940 TLCVE 944 (945)
Q Consensus 940 ~vWdl 944 (945)
++|+.
T Consensus 597 K~W~v 601 (603)
T KOG0318|consen 597 KVWNV 601 (603)
T ss_pred EEecc
Confidence 99986
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-54 Score=446.76 Aligned_cols=541 Identities=18% Similarity=0.276 Sum_probs=424.8
Q ss_pred HHHhhhcCCCCCCcceeecCCCCc---cccCCCCCcceEEeec--CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC
Q 002264 303 EQLMKRLRPAPSAEEVTYSSSRHQ---TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377 (945)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~--h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~ 377 (945)
++.+......|+ +++.+.....+ +|.+... ..++... |+++|.-++|+|.|. +||+|+.||.|+|||+..+
T Consensus 62 ~d~ita~~l~~d-~~~L~~a~rs~llrv~~L~tg--k~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~ 137 (775)
T KOG0319|consen 62 EDEITALALTPD-EEVLVTASRSQLLRVWSLPTG--KLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNG 137 (775)
T ss_pred hhhhheeeecCC-ccEEEEeeccceEEEEEcccc--hHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCC
Confidence 333444444433 33444443333 7887764 5555554 999999999999996 8999999999999999988
Q ss_pred CcccccccccccccccCcccccccccCCCccEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccceeeccccccEE
Q 002264 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455 (945)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~ 455 (945)
...+ .|.||.+.|.++.|.|+-. .|++|..|+++++||+.+... ....+..|.+.|+
T Consensus 138 ~~th-------------------~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vt 196 (775)
T KOG0319|consen 138 YCTH-------------------SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVT 196 (775)
T ss_pred EEEE-------------------EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhhee
Confidence 7764 4899999999999999754 589999999999999986543 2336778999999
Q ss_pred EEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeec---CCccEEEEEEcCCeEEEEEccCCCee
Q 002264 456 DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSR 531 (945)
Q Consensus 456 ~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~ 531 (945)
+++|++|+. -++++|.|..+.+|| .+.+.+..+... ..+-++.+.+. ..+.++++.|.+|.+++||.+++...
T Consensus 197 sL~~~~d~~--~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~ 273 (775)
T KOG0319|consen 197 SLAFSEDSL--ELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCV 273 (775)
T ss_pred eeeeccCCc--eEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhh
Confidence 999999998 899999999999999 666666555432 33445544443 11469999999999999999887776
Q ss_pred EEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEE-EEcCCCCEEEEEECCCcE
Q 002264 532 VDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV-QFDTTQNHFLAVGEDSQI 609 (945)
Q Consensus 532 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i 609 (945)
...... ...+..+...+....++..+. +..+.++|.++.++.+.+.|.++ .|..+ .+.|+.++++++++.+.+
T Consensus 274 ~~~~~~~~~e~~~~~~~~~~~~~l~vta----eQnl~l~d~~~l~i~k~ivG~nd-EI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 274 YKQRQSDSEEIDHLLAIESMSQLLLVTA----EQNLFLYDEDELTIVKQIVGYND-EILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hhhccCCchhhhcceeccccCceEEEEc----cceEEEEEccccEEehhhcCCch-hheeeeecCCccceEEEEeCCCce
Confidence 544333 233555555554444444443 88999999999999999999888 45555 457888999999999999
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccc
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g 689 (945)
++|+..+..+. .+.+| ...|.++....+|-+|++|+.|.++++|.++++.... ..-.....+.+.|.+++++..|
T Consensus 349 r~y~~~~~~c~-ii~GH--~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 349 RLYTLPTSYCQ-IIPGH--TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--LCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred EEEecCCCceE-EEeCc--hhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--hhhhhhcccccccceeeecccC
Confidence 99998887766 55544 4589999977788999999999999999885442211 1111222344568888886554
Q ss_pred cceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecC-CCCCCccceE
Q 002264 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP-ESTDTSSKVV 768 (945)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 768 (945)
.. .+++++.|+++++|++....+......+... ....|...|.
T Consensus 424 as------------------------------------ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 424 AS------------------------------------FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred cc------------------------------------EEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 33 3489999999999999873333322222110 1134899999
Q ss_pred EEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEe
Q 002264 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (945)
Q Consensus 769 ~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~ 848 (945)
+++++|+.+.+++++.|++.++|+++.. . +...+.| |...|+++.|++..+.+|+
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~----------------------~-l~~vLsG--H~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQL----------------------R-LLGVLSG--HTRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCc----------------------e-EEEEeeC--CccceEEEEeccccceeEe
Confidence 9999999999999999999999986421 1 1223666 9999999999999999999
Q ss_pred cC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCc
Q 002264 849 AT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (945)
Q Consensus 849 ~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 927 (945)
+| |.+|+||.+.++.++.+|.||...|..+.|-. ++..|++++.||-|++|++.+++|+.++.+|.+.|++++-++++
T Consensus 523 ~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred ccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 99 89999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCceEEEEe
Q 002264 928 NILVSSGADAQVTLCV 943 (945)
Q Consensus 928 ~~l~s~~~Dg~i~vWd 943 (945)
.+++||+.||.|.+|.
T Consensus 602 ~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEecCCCeEEEEee
Confidence 9999999999999994
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-53 Score=444.39 Aligned_cols=536 Identities=16% Similarity=0.245 Sum_probs=435.2
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~ 429 (945)
++||++|+ .|++.. ...|.+-|+.+++.... ..-.+-...+++++.+||+.+|++++..+.
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~-----------------s~~~ed~d~ita~~l~~d~~~L~~a~rs~l 85 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALP-----------------SGSNEDEDEITALALTPDEEVLVTASRSQL 85 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceecc-----------------cCCccchhhhheeeecCCccEEEEeeccce
Confidence 89999999 588765 34688899999876310 112345678999999999999999999999
Q ss_pred EEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCC
Q 002264 430 IQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKEN 507 (945)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~ 507 (945)
+++|++.+|+.++ .+.. |.+||.-++|+|.+. .+++|+.|+.++||| ..+.+.+.|+||.+.|.++.|+|..+
T Consensus 86 lrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 86 LRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred EEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 9999999998887 4555 999999999999997 999999999999999 88899999999999999999999888
Q ss_pred ccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~ 586 (945)
...|++|..|+++++||+.+... ...+..|.+.|+++.+++|+..+++++. |..+.+||+.+.+..++++...
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-- 234 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-- 234 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh--
Confidence 78899999999999999986554 6677889999999999999999999996 8999999998877777766544
Q ss_pred ceEEEEEcCC-----CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 587 SNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 587 ~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.++.+-++ +.+++++|.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.++.
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l 313 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL 313 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc
Confidence 3666667666 6799999999999999999998877665443 224666666666666677778889999999887
Q ss_pred ccccccccCCccccccCcceeeee-cccccceeccCCCCCccccccCCCCCCCcccCCC-CC----ccCCCCCccccCCC
Q 002264 662 LRSLRAVENPPFEALRTPIESVAL-KVSASSAVSSGTPANCKVERSSPVRPSPIINGVD-PT----SRSMDKPRTVDDVT 735 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~-s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~~~d 735 (945)
+..+.+.|.... |..+.| .|+.+.++.+......++......... ++.+.. .. ....|-++++++.|
T Consensus 314 -~i~k~ivG~ndE-----I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 314 -TIVKQIVGYNDE-----ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred -EEehhhcCCchh-----heeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCC
Confidence 677777776554 556655 567788888877777776532222222 444332 21 23456789999999
Q ss_pred CCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC-CeEEEeeecCeEEEEeecCCCCCCCCceeeeecccccc
Q 002264 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (945)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (945)
.++++|.+++ .......+....+|...|.+++++..+ ..+++++.|+++++|+++....... ..++.
T Consensus 387 ~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~~~~ 454 (775)
T KOG0319|consen 387 KSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PIVLT 454 (775)
T ss_pred ceEEEEEecC----CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------cceeh
Confidence 9999999943 222223333445699999999998765 5688999999999999875221100 00000
Q ss_pred CCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeec
Q 002264 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (945)
Q Consensus 815 ~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~ 893 (945)
.......|...|++++++|+.+++|+|| |.+.+||+++......++.||...|.||.|++ ..+++||+|.
T Consensus 455 --------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~Sg 525 (775)
T KOG0319|consen 455 --------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSG 525 (775)
T ss_pred --------hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccC
Confidence 0112223999999999999999999999 88899999999999999999999999999999 8999999999
Q ss_pred CceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 894 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|++|+||.+.+..|++++.||+..|..+.|-.+|+.|+|++.||.+++|+.
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999999986
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-53 Score=411.07 Aligned_cols=375 Identities=22% Similarity=0.369 Sum_probs=304.8
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
++.+.....+...+-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.+.... ...++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~-------------------~t~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPL-------------------FTCKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcc-------------------eeecCCc
Confidence 44444445555666789999999999999996 999999999999999987765 3488999
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec-----CCCeeEEEEEeCCCcEEEEe
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~~~l~s~s~d~~i~vwd 481 (945)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ... +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999987654 6889999999999976 455 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
..++++..+.+|..+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|+.++.+-| +++-.+
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd--y~LRtg--- 305 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD--YVLRTG--- 305 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch--hhhhcc---
Confidence 88899999999999999999843 3 59999999999999999888888899999999998887654 221111
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+|.|.++..-..++ .. .+.+..+ ....-..
T Consensus 306 -------------------------------af~~t~~~~~~~se--------~~-~~Al~rY----------~~~~~~~ 335 (480)
T KOG0271|consen 306 -------------------------------AFDHTGRKPKSFSE--------EQ-KKALERY----------EAVLKDS 335 (480)
T ss_pred -------------------------------ccccccccCCChHH--------HH-HHHHHHH----------HHhhccC
Confidence 12222211100000 00 0000000 0011113
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCC
Q 002264 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (945)
Q Consensus 641 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945)
+..|++|++|.++.+|+.....+.+.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------------ 361 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------------ 361 (480)
T ss_pred cceeEEecCCceEEEecccccccchh------------------------------------------------------
Confidence 46788888888888887643211100
Q ss_pred CccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC
Q 002264 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (945)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~ 800 (945)
T Consensus 362 -------------------------------------------------------------------------------- 361 (480)
T KOG0271|consen 362 -------------------------------------------------------------------------------- 361 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEE
Q 002264 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (945)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~ 879 (945)
...+ |..-|..+.||||++++|++| |..|++||..+|+.+.+|+||-+.|+.++
T Consensus 362 -----------------------rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 362 -----------------------RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred -----------------------hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 0222 778889999999999999999 88999999999999999999999999999
Q ss_pred eecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
||. |.++|++|+.|.+++||++++.++...|.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-47 Score=396.07 Aligned_cols=496 Identities=15% Similarity=0.234 Sum_probs=397.4
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
.+.+...|++++.||+|. +|++-...|...+-++.....++... ...+|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCc
Confidence 345889999999999998 56666788888888887766554211 246899999999999
Q ss_pred EEEEEECCCcEEEEEccCCcc-----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC--CceEEEec
Q 002264 420 YVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--GRKLFNFE 491 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~--~~~~~~~~ 491 (945)
++|.|.. ..+.||....... .....++.+|-..|+++.|+.|.+ +|++||.|.++++|+ .. +-....+.
T Consensus 110 ~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 9999865 4699998754322 223346778999999999999999 999999999999999 33 33367889
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-----------------------CCe-----e------EEecCC
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----------------------MGS-----R------VDYDAP 537 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~-----~------~~~~~~ 537 (945)
+|...|..+-|.. +...+++.+.||.+.+|.... ++. . .-+...
T Consensus 187 gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 187 GHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred CCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 9999999887755 557799999999999997761 111 0 011122
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDN 616 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 616 (945)
...+++.+|++..+.|+++-. .|...+|++....+++.+.-... .+..++|+..|.+++.|+. =|.+.||+..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 357899999998888888875 88899999999999998876655 7888999999999999885 48999999998
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
...+...++| ...+++++++|||+++|+|++||.|+|||...+ -++.++..|+. .++.+.|+..|+.+
T Consensus 340 EsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts-----~Vt~v~f~~~g~~l---- 407 (893)
T KOG0291|consen 340 ESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTS-----GVTAVQFTARGNVL---- 407 (893)
T ss_pred cceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCC-----ceEEEEEEecCCEE----
Confidence 8777666655 558999999999999999999999999999988 67777776655 47888888776655
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
++.+.||+|+.||+.. ...++.++.| ..-...+++..|.|
T Consensus 408 ---------------------------------lssSLDGtVRAwDlkR---YrNfRTft~P----~p~QfscvavD~sG 447 (893)
T KOG0291|consen 408 ---------------------------------LSSSLDGTVRAWDLKR---YRNFRTFTSP----EPIQFSCVAVDPSG 447 (893)
T ss_pred ---------------------------------EEeecCCeEEeeeecc---cceeeeecCC----CceeeeEEEEcCCC
Confidence 6899999999999986 3445555544 34556788999999
Q ss_pred CeEEEeeec-CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeE
Q 002264 777 VGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (945)
Q Consensus 777 ~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i 854 (945)
..+.+++.| -.|.+| +.++|+++.. +.| |.++|.+++|+|+|..||++| |.+|
T Consensus 448 elV~AG~~d~F~IfvW----------------------S~qTGqllDi-LsG--HEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVW----------------------SVQTGQLLDI-LSG--HEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred CEEEeeccceEEEEEE----------------------EeecCeeeeh-hcC--CCCcceeeEEccccCeEEeccccceE
Confidence 987777776 345555 5567776654 777 999999999999999999999 9999
Q ss_pred EEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC--------------------
Q 002264 855 SLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-------------------- 913 (945)
Q Consensus 855 ~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~-------------------- 913 (945)
++||+-.. ..+.++. +...++.++|+| +|+-||+++-||.|.+||+..+..+..+.+
T Consensus 503 RiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 99998754 3455565 677899999999 999999999999999999987655433322
Q ss_pred CCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 914 HQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 914 h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.....+.+++|+||..+++||..+.|.+|+.+
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 23578999999999999999999999999874
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-47 Score=395.75 Aligned_cols=509 Identities=14% Similarity=0.221 Sum_probs=408.5
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..+.+.+..+.+|.|+.|||+|+ ++|+|. ..-+.||.......-.-.+| ...+.+.+|-..|.++.|
T Consensus 87 r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~pF-----------vl~r~~~g~fddi~si~W 153 (893)
T KOG0291|consen 87 RSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNPF-----------VLHRTYLGHFDDITSIDW 153 (893)
T ss_pred ceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCcc-----------eEeeeecCCccceeEEEe
Confidence 45667778889999999999999 466654 67899998754332111111 133568899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC-----------
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----------- 483 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~----------- 483 (945)
|.|.++|++|+.|.++++|.++..+.+... .+.+|+..|.++-|..+.. -++|.+.||.+.+|..+
T Consensus 154 s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-~l~gHkd~VvacfF~~~~~--~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 154 SDDSRLLVTGSRDLSARLFGVDGNKNLFTY-ALNGHKDYVVACFFGANSL--DLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred ccCCceEEeccccceEEEEEeccccccceE-eccCCCcceEEEEeccCcc--eEEEEecCceEEEEEecCCCcccccccc
Confidence 999999999999999999999887764433 5789999999999999988 78999999999999722
Q ss_pred -------------Cce-----------EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC
Q 002264 484 -------------GRK-----------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 484 -------------~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 539 (945)
++. ..-+......|++.+|++.. ..|++|-..|...+|.+.....+..+.....
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--NLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--eEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 111 01112233678999998754 7899999999999999999999999999989
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
+|..++|+..|.+++.++. +-|++.+|+..+...+.+.++|.. .+.+++++|||+++++|++||+|+|||..++-+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred eeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 9999999999999999985 478999999999999999999987 899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCC
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~ 699 (945)
+.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... +..+++..+... ...+++..|.|..+.
T Consensus 385 ~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~----QfscvavD~sGelV~------ 451 (893)
T KOG0291|consen 385 FVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPI----QFSCVAVDPSGELVC------ 451 (893)
T ss_pred EEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCCCce----eeeEEEEcCCCCEEE------
Confidence 999987654 8999999999999999999999999999877 666776654332 345777777777764
Q ss_pred CccccccCCCCCCCcccCCCCCccCCCCCccccCCC-CCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT-DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
+|+.| =.|.+|++..+.... .+. ||.++|.+++|+|+|..
T Consensus 452 -------------------------------AG~~d~F~IfvWS~qTGqllD-----iLs---GHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 452 -------------------------------AGAQDSFEIFVWSVQTGQLLD-----ILS---GHEGPVSGLSFSPDGSL 492 (893)
T ss_pred -------------------------------eeccceEEEEEEEeecCeeee-----hhc---CCCCcceeeEEccccCe
Confidence 33333 468899987532221 223 49999999999999999
Q ss_pred EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEE
Q 002264 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iw 857 (945)
|++++.|.+|++|++-... ++... +. +...+.+++|+|||+.+|++. ||.|.+|
T Consensus 493 LaS~SWDkTVRiW~if~s~--------------------~~vEt--l~---i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSS--------------------GTVET--LE---IRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred EEeccccceEEEEEeeccC--------------------ceeee--Ee---eccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 9999999999999863211 11111 11 567899999999999999999 9999999
Q ss_pred eccCceEEEEecC--------------------CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC----
Q 002264 858 NMMTFKVMTTFMS--------------------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---- 913 (945)
Q Consensus 858 d~~~~~~~~~~~~--------------------h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~---- 913 (945)
|...+.....+.+ .....+.+++|+ ||..|.+|+..+.|++|++.++-+++.++-
T Consensus 548 d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 548 DIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 9887666544432 123589999999 899999999999999999987755544320
Q ss_pred ----------------------------------------------------CCcceeEEEecCCcceeeeecCCceEEE
Q 002264 914 ----------------------------------------------------HQKRITGLAFSTSLNILVSSGADAQVTL 941 (945)
Q Consensus 914 ----------------------------------------------------h~~~V~~l~~s~dg~~l~s~~~Dg~i~v 941 (945)
..-.|++|.|+|.|+-++.++..| +.|
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~I 705 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLI 705 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEE
Confidence 012488999999999999999999 566
Q ss_pred Eec
Q 002264 942 CVE 944 (945)
Q Consensus 942 Wdl 944 (945)
|.+
T Consensus 706 Ysl 708 (893)
T KOG0291|consen 706 YSL 708 (893)
T ss_pred Eec
Confidence 665
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-48 Score=401.96 Aligned_cols=508 Identities=14% Similarity=0.238 Sum_probs=398.6
Q ss_pred cccCCCCCcce-EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 327 TWSLDDLPRTV-AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 327 ~~~~~~~~~~~-~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
+|++....... +.......+|+|++-+|+.. +||+|-.||.|+||+..++.... .+.||
T Consensus 47 ~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngH 106 (888)
T KOG0306|consen 47 IWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGH 106 (888)
T ss_pred EEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eeccc
Confidence 88887653222 22334557999999999987 79999999999999998775542 38899
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
..+|+++.|+..|..||+|+.|+.|.+||+-...... .+.||+..|+.+-|..+.+ ++++.|.|+.|++|| .+.
T Consensus 107 K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred ccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccc
Confidence 9999999999999999999999999999997654333 6889999999999998677 899999999999999 888
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee--------------EEecCCC------------
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--------------VDYDAPG------------ 538 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~~~~------------ 538 (945)
.+..+.-.|.+.++.+++.+ +.+++++.|+.+++|++...... ......+
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred eeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 89999999999999999865 57999999999999998211000 0000000
Q ss_pred ---------------------------------------------------------------CeEEEEEEcCCCC---E
Q 002264 539 ---------------------------------------------------------------HWCTTMLYSADGS---R 552 (945)
Q Consensus 539 ---------------------------------------------------------------~~i~~~~~s~~~~---~ 552 (945)
..+.++.|.|.++ .
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 1233333433322 1
Q ss_pred EEEEeecCCCCceEEEEeCCCCcee---------eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIK---------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
|+.. .++.+..|.+...... ..+.+|.. .|..++++.+...+++| ..+.|.+|+..+.+++.++
T Consensus 338 lv~l-----~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 338 LVLL-----ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTI 410 (888)
T ss_pred EEEe-----ecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEe
Confidence 2221 1444555554431111 24556665 78999999876555544 4678999999999999998
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
... .+.+..|-|.++++++|...|.+.+||+.+. ..+.+.+.| .+.|.+++.+||++..
T Consensus 411 ~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH-----dgaIWsi~~~pD~~g~----------- 469 (888)
T KOG0306|consen 411 TCG----YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH-----DGAIWSISLSPDNKGF----------- 469 (888)
T ss_pred ccc----cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc-----ccceeeeeecCCCCce-----------
Confidence 653 6789999999999999999999999999887 455555444 4468888888887765
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeec-CCcc-eeeecCC--CCCCccceEEEEEecCCCeE
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD-SGQC-RLVTMPE--STDTSSKVVRLLYTNSAVGL 779 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~-~~~~~~~--~~~~~~~v~~l~~s~dg~~l 779 (945)
++|+.|.+|++|+..-... ++.. +.+.+.. .-.-...|.++.+||||++|
T Consensus 470 --------------------------vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 470 --------------------------VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred --------------------------EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 6888899999999764333 1111 1111110 00134689999999999999
Q ss_pred EEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEe
Q 002264 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFN 858 (945)
Q Consensus 780 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd 858 (945)
+++--|.++++|-++.-.+ ...+.| |.-+|.|+..|||++.+++|| |..|+||-
T Consensus 524 aVsLLdnTVkVyflDtlKF-----------------------flsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKF-----------------------FLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred EEEeccCeEEEEEecceee-----------------------eeeecc--cccceeEEeccCCcCeEEeccCCCceEEec
Confidence 9999999999997643221 111445 999999999999999999999 88899999
Q ss_pred ccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCce
Q 002264 859 MMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (945)
Q Consensus 859 ~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~ 938 (945)
++-|.|.+.+-+|.+.|.++.|.| ....+.+++.|+.|+-||-.+.++++.+.+|...|++++.+|+|.+++|+|.|.+
T Consensus 579 LdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 579 LDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred cccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 002264 939 VTLCV 943 (945)
Q Consensus 939 i~vWd 943 (945)
|++|.
T Consensus 658 IRlwE 662 (888)
T KOG0306|consen 658 IRLWE 662 (888)
T ss_pred eEeee
Confidence 99996
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-46 Score=377.12 Aligned_cols=504 Identities=15% Similarity=0.267 Sum_probs=396.1
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~ 429 (945)
+--.|.|+.+|.+.+ ..|.+-++++.... .++.+|...++-..|||.|.|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~-------------------~iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASV-------------------DIYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCccce-------------------eeeccccceeEEEEeCCCceEEeecCCcCc
Confidence 344677887777754 67888888776543 348889999999999999999999999999
Q ss_pred EEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC--CC--cEEEEeCCCceEEEecCCCCCEEEEEeeec
Q 002264 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DK--LIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (945)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~--d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (945)
|+|||....+.+ ...+++.-.++|.+++|+.|+++ ++..++ ++ .+.+|| +|..+..+.+|...|+++.|-|+
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCC
Confidence 999998763322 22256677899999999999994 444442 33 345565 67778889999999999999887
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec---c
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---G 582 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~---~ 582 (945)
.. -++++|++|++|.+|+-.-.+-..++..|...|+++.|+|||.++++++. |+.+.+||-.+++.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 54 68999999999999975555555566778889999999999999999997 9999999999999999988 6
Q ss_pred ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC-CCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|.+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|.|.+++...+
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 665 7999999999999999999999999999999999988765431 122345564 568899999999999999988
Q ss_pred ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccc
Q 002264 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (945)
. .++.+.+|.. .|++++.+++++.+ ++++.||.|.-|
T Consensus 311 ~-~~~~i~GHnK-----~ITaLtv~~d~~~i-------------------------------------~SgsyDG~I~~W 347 (603)
T KOG0318|consen 311 S-VLKVISGHNK-----SITALTVSPDGKTI-------------------------------------YSGSYDGHINSW 347 (603)
T ss_pred C-hhheeccccc-----ceeEEEEcCCCCEE-------------------------------------EeeccCceEEEE
Confidence 4 7888888765 48899999888766 699999999999
Q ss_pred ccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCC--------ceeeee-----
Q 002264 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG--------KATASA----- 808 (945)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~--------~~~~~~----- 808 (945)
+.......... - .+|...|.+++.+..+. +++.+.|.++++.++..+...... ..++..
T Consensus 348 ~~~~g~~~~~~----g---~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 348 DSGSGTSDRLA----G---KGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred ecCCccccccc----c---ccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 98753332211 1 23899999999987666 888888999999987553322211 011100
Q ss_pred -------ccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE--EEEecCCCCCeeEE
Q 002264 809 -------VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFL 878 (945)
Q Consensus 809 -------~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~--~~~~~~h~~~i~~l 878 (945)
.+.+..-.++- . ...-.....++|++|++..+|+|+ |++|+||.+...+. ...+..|.++|+++
T Consensus 420 avv~~~~~iv~l~~~~~~-~-----~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKV-S-----SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred EEEEecCcEEEEecCCcc-e-----eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 11111111110 0 001234578999999999999999 89999999986553 33455799999999
Q ss_pred EeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 879 ~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
+||| |+.+||+|...+.|-+||+.+.+.... +.-|+..|.+|+|+|+..++|||+-|.+|.||++
T Consensus 494 aySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 494 AYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 9999 999999999999999999999876433 4449999999999999999999999999999986
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-45 Score=378.74 Aligned_cols=544 Identities=15% Similarity=0.221 Sum_probs=412.1
Q ss_pred CcEEEEEEe-CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 345 STVISMDFH-PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fs-p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
+++..+..+ ..|++ ++ ++.-..|.+||+++|+.... + ....-...|+|+.-+|+.-.||+
T Consensus 22 aN~~~~~~~~~~Gr~-va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAV 82 (888)
T KOG0306|consen 22 ANINFVVKRSGKGRA-VA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAV 82 (888)
T ss_pred cceeEEEeecCCCcE-EE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEE
Confidence 344444443 35775 33 33457899999999965421 1 01123468999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
|..||.|++|+..++...- ++.+|...|+.+.|...|. .|+|||.|+.|.+|| ....-+.++.||...|+..-|
T Consensus 83 GYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 83 GYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF 157 (888)
T ss_pred EecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence 9999999999998875444 7889999999999999999 899999999999999 777778999999999998887
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--------
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-------- 574 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-------- 574 (945)
.. +..++++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++. ++.+.+|++...
T Consensus 158 ~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~ 229 (888)
T KOG0306|consen 158 LN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNR 229 (888)
T ss_pred cC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccc
Confidence 64 347999999999999999999999999999999999999987 67777765 888999998311
Q ss_pred ----ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE--------------E--------------
Q 002264 575 ----TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--------------S-------------- 622 (945)
Q Consensus 575 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~-------------- 622 (945)
+...++........-.+...++++++++-+.|..+.+|.+.+.+.+. .
T Consensus 230 ~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~ 309 (888)
T KOG0306|consen 230 YISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSD 309 (888)
T ss_pred cceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHH
Confidence 11112222222233346667778889999999999999886532110 0
Q ss_pred ----eecCCCCCCccEEEEcCCCC---EEEEEECCCcEEEEECCCCccc---cccccCCccccccCcceeeeecccccce
Q 002264 623 ----TDAEGGLPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 623 ----~~~~~~~~~v~~v~~sp~g~---~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
+..-.....+.++.|-|.++ .|+. -.++++..+.+...... ...........+++.|.+++++.+...+
T Consensus 310 ~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~ 388 (888)
T KOG0306|consen 310 EIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL 388 (888)
T ss_pred HHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence 00001123577888888543 3344 55778888887652111 1111223445677789999999999988
Q ss_pred eccCCCCCccccccCCCCCCCccc---CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEE
Q 002264 693 VSSGTPANCKVERSSPVRPSPIIN---GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (945)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 769 (945)
+++.+....-|.+ ...+.+..+. .....+.|.++.+++|...|.+.++|+.+.......+ +|.+.|..
T Consensus 389 ~Sga~~SikiWn~-~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--------AHdgaIWs 459 (888)
T KOG0306|consen 389 ASGAGESIKIWNR-DTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR--------AHDGAIWS 459 (888)
T ss_pred eecCCCcEEEEEc-cCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh--------ccccceee
Confidence 8877665554433 3333333333 2345688999999999999999999998643333322 29999999
Q ss_pred EEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec
Q 002264 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (945)
Q Consensus 770 l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~ 849 (945)
++.+||++.+++++.|.+|++|++..... ..|... ++..... +..+. -...|.|+.+||||++||++
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~-----k~lsl~~----~rtLe---l~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK-----KVLSLKH----TRTLE---LEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc-----eeeeecc----ceEEe---ccccEEEEEEcCCCcEEEEE
Confidence 99999999999999999999999754221 000000 0000000 01111 36789999999999999999
Q ss_pred C-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcc
Q 002264 850 T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 850 s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
- |++++||-+++.+....+-||.-+|.|+..|| |+++++||+.|++|+||-++=|.|.+.+.+|.+.|.+|.|.|+..
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 8 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCceEEEEec
Q 002264 929 ILVSSGADAQVTLCVE 944 (945)
Q Consensus 929 ~l~s~~~Dg~i~vWdl 944 (945)
.++|+|.|+.|+-||.
T Consensus 606 ~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDG 621 (888)
T ss_pred eEEEecCcceEEeech
Confidence 9999999999999985
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-45 Score=354.76 Aligned_cols=297 Identities=17% Similarity=0.309 Sum_probs=267.2
Q ss_pred cccCCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
+|+++. ..+.++.. |...|.|++|||||+ .||+|+.||+|++||..+|+++. ..+.+|
T Consensus 141 ~WD~~T--eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g------------------~~l~gH 199 (480)
T KOG0271|consen 141 LWDLDT--ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIG------------------RALRGH 199 (480)
T ss_pred eeccCC--CCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCccc------------------ccccCc
Confidence 898886 55566655 999999999999999 59999999999999999998864 448899
Q ss_pred CccEEEEEEcC-----CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 406 PISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 406 ~~~V~~i~~s~-----~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
...|++++|-| ..++||+++.||.|+|||+..+.++. .+.+|+.+|+|+.|--+| ++++||.|++|++|
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~---~lsgHT~~VTCvrwGG~g---liySgS~DrtIkvw 273 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR---TLSGHTASVTCVRWGGEG---LIYSGSQDRTIKVW 273 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE---EeccCccceEEEEEcCCc---eEEecCCCceEEEE
Confidence 99999999976 57899999999999999999988776 788999999999997655 79999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEee-----------ecC-----------------------CccEEEEEEcCCeEEEEEc
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPH-----------HKE-----------------------NIQFIFSTAIDGKIKAWLY 525 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~-----------~~~-----------------------~~~~l~s~~~dg~i~iwd~ 525 (945)
+ ..|.+...+++|...|+.++.+ +.+ .+..+++|+.|.++.+|+.
T Consensus 274 ~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 274 RALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred EccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc
Confidence 9 8999999999999999999875 111 2346999999999999986
Q ss_pred cCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 526 DTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 526 ~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
.... ++..+.+|...|+.+.||||+++++++++ |..|++||.++|+.+.+|++|-. .+..++|+.|.+++++|+
T Consensus 354 ~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF----DkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 354 FKSKKPITRMTGHQALVNHVSFSPDGRYIASASF----DKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGS 428 (480)
T ss_pred cccccchhhhhchhhheeeEEECCCccEEEEeec----ccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcC
Confidence 5544 56678889999999999999999999998 89999999999999999999987 899999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
.|.++++|++++.++...+.+|.. .|.++.|+|||..+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~D--EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHAD--EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCc--eEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999998888876654 999999999999999999999999994
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-42 Score=357.99 Aligned_cols=505 Identities=15% Similarity=0.206 Sum_probs=363.9
Q ss_pred eEEeec-CCCcEEEEEEeCCCCeEEEEEe--CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 337 ~~~~~~-h~~~V~~v~fsp~g~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
..++.. |..+++|++||++|+| +|+|- ..-.++||++.....+.+ +..|...|+|++
T Consensus 70 Q~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcva 129 (1080)
T KOG1408|consen 70 QSHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVA 129 (1080)
T ss_pred hhheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeee
Confidence 344444 7789999999999996 99985 456899999988776643 778999999999
Q ss_pred EcCCCCEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE--
Q 002264 414 WSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-- 488 (945)
Q Consensus 414 ~s~~g~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~-- 488 (945)
|+|.++|+++.+. |-.|.+||++...... -..-...|..++|+.||. |++|.+ ...|++|. ..++...
T Consensus 130 Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~Kykdp 202 (1080)
T KOG1408|consen 130 FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDP 202 (1080)
T ss_pred ecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCC
Confidence 9999999998765 4467888876543222 223456799999999999 899887 78899998 3332100
Q ss_pred -----------Ee------------------------cCC-----------------CCCEEEEEeeecCCccEEEEEEc
Q 002264 489 -----------NF------------------------EGH-----------------EAPVYSICPHHKENIQFIFSTAI 516 (945)
Q Consensus 489 -----------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~ 516 (945)
.+ .|| .....||+++ .++|+.|+.
T Consensus 203 iPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa 278 (1080)
T KOG1408|consen 203 IPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCA 278 (1080)
T ss_pred ccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeec
Confidence 00 000 1122345543 369999999
Q ss_pred CCeEEEEEccCCCeeEEecC--------------------CC----CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 517 DGKIKAWLYDTMGSRVDYDA--------------------PG----HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~~~~~--------------------~~----~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
+|.|++|+..+-....++.. .. .....+.|++....|.+... |..+++||++
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvr 354 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVR 354 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecc
Confidence 99999997654322211110 00 02346778888888887774 8999999998
Q ss_pred CCceee---EeccccCcceEEEEEcC-----------CCCEEEEEECCCcEEEEECCCCeeEEE-------------e--
Q 002264 573 EGTIKR---TYAGFRKKSNGVVQFDT-----------TQNHFLAVGEDSQIKFWDMDNVNILTS-------------T-- 623 (945)
Q Consensus 573 ~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~-- 623 (945)
+-+.+. .+-.|.. .|+.+..-| -...|++++.|++|++|++..+..-.. .
T Consensus 355 D~~kvgk~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred ccccccceeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 754332 2222322 344333222 023589999999999999976321000 0
Q ss_pred --------------------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 624 --------------------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 624 --------------------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
..-+....+.+++.+|+|++||+|..-|.++++++... +....++.|.. .|.++
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHes-----EilcL 507 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHES-----EILCL 507 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccc-----eeEEE
Confidence 00011235789999999999999999999999999866 44444554443 46677
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
.++..- -..+.+++++.|.-|.++|+...... .-++.+ |
T Consensus 508 eyS~p~----------------------------------~~~kLLASasrdRlIHV~Dv~rny~l----~qtld~---H 546 (1080)
T KOG1408|consen 508 EYSFPV----------------------------------LTNKLLASASRDRLIHVYDVKRNYDL----VQTLDG---H 546 (1080)
T ss_pred eecCch----------------------------------hhhHhhhhccCCceEEEEecccccch----hhhhcc---c
Confidence 765321 12256789999999999998742221 123444 9
Q ss_pred ccceEEEEEecCC--CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 764 SSKVVRLLYTNSA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 764 ~~~v~~l~~s~dg--~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
++.|+++.|...| ..+++++.|+.|.+-.... ..+|.. +-..+. .+ ....++.+++.|
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk---~~~g~~--------f~r~t~-----t~----~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQK---ASSGRL--------FPRHTQ-----TL----SKTTLYDMAVDP 606 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhcc---ccCcee--------cccccc-----cc----ccceEEEeeeCC
Confidence 9999999999888 7799999998776532110 001111 000000 01 346789999999
Q ss_pred CCceEEecC-CCeEEEEeccCceEEEEecC---CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcc
Q 002264 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~ 917 (945)
..+++++++ |..|+|||+.+++..+.|++ |.+....+...| .|.|||+...|+++.++|.-+|+|+.++.||...
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 999999999 88899999999999999986 666788899999 9999999999999999999999999999999999
Q ss_pred eeEEEecCCcceeeeecCCceEEEEecC
Q 002264 918 ITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 918 V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
|+.|.|++|.++|++++.||+|+||.++
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999999999999985
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-42 Score=364.15 Aligned_cols=274 Identities=19% Similarity=0.303 Sum_probs=239.6
Q ss_pred CCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccc--c-ccccc---------ccccccCcc
Q 002264 330 LDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV--S-KPFKI---------WDMAACSLP 396 (945)
Q Consensus 330 ~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~--~-~~~~~---------~~~~~~~~~ 396 (945)
-..+|..+++++. -...++|+.||+|+. +||.|-.|..|++|.+...+... . ..+.- -++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 3456778888887 567999999999999 79999999999999998533111 0 00000 111122222
Q ss_pred cccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 397 ~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
.....+.||+++|..++|+|+.++|++++.|++||+|.+.+..++. .+.||..+|+++.|+|-|- +|+|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999987665 6789999999999999998 9999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
.++|. ....+++.+.+|-+.|.|+.|+| ++.++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999 88899999999999999999999 5589999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++. ++.|.+||+.+++.+..+.+|.+ .+.++.|+.+|..|++||.|++|++||+..
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 986 99999999999999999999965 899999999999999999999999999865
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-42 Score=336.58 Aligned_cols=283 Identities=17% Similarity=0.268 Sum_probs=264.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--C
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--g 418 (945)
++.+.+|..+.||+|++ +|||||-+|.++||+..+...+ ..+.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~-------------------~~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLL-------------------QTLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCccee-------------------EEEeccccceeeEEEccCCCc
Confidence 45677999999999999 6999999999999999888655 348999999999999996 6
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v 497 (945)
..||+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 7889999999999999999 999999999999999 8888888889999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.+++|++ ||.++++||.|..-+|||++++.++..+.+|..+|.++.|+|+|..+++++. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999987 6789999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred eEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.++.+|.+ .|+.+.|+| .|.+|++++.|+++++|...+..+++.+.+|.. .|.++.+++|+.++++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 688999999999999999999999999998765 89999999999999999999999999
Q ss_pred E
Q 002264 657 A 657 (945)
Q Consensus 657 ~ 657 (945)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.9e-40 Score=325.05 Aligned_cols=302 Identities=19% Similarity=0.288 Sum_probs=259.6
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC--CcccccccccccccccCcccccccccC----CC
Q 002264 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKD----VP 406 (945)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~ 406 (945)
.|....+.+.|+.+|.+++|+|-..-+|++|+.|.+.++|++... ....+..++ +...+.+ ..
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----------h~~~~~~~s~~~n 235 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----------HCIREGGKSVPSN 235 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----------hhhhhhcccCCcc
Confidence 566677788899999999999987757999999999999998641 111100010 0000111 24
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
..|++++|+.+|..||+|+.||.+++|+..++ .+. ++..|+++|.++.|+..|. ++++++.|+++.+|| .+|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCce
Confidence 68999999999999999999999999997753 333 6888999999999999999 999999999999999 9999
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
..+.+.-|..+-..+.|-. + .-+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|..|++++. |++
T Consensus 310 ~~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~T 382 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGT 382 (524)
T ss_pred EEEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCe
Confidence 9999999998877777753 2 57999999999999999999999999999999999999999999999996 999
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCC---------CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
++||..........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..|. .+|.+++
T Consensus 383 lkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEE
Confidence 99999999999999999987 78889999865 468899999999999999999999987664 4999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCC
Q 002264 637 FSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|+|+++|+|+.||.|.+|+.+++
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccch
Confidence 9999999999999999999999887
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=329.36 Aligned_cols=251 Identities=22% Similarity=0.310 Sum_probs=229.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
|-+.+|..+.||.|++.||||+-+|.++||+..+...+. ++.+|.+.|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999998875554 799999999999999984222799999999999999 5
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
+..++..+.+|...|..++|+| +|++|.+++.|.+-++||+++........+|...|.+++|.+||..++++|.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 5689999999999999999998 5689999999999999999999999999999999999999999999999997
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g 641 (945)
|..-++||+++|+.+..+.+|.+ .|..+.|+|+|..+++|+.|++++|||++..+.+..+..|.. -|..|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88889999999999999999887 899999999999999999999999999999999888877654 899999999 88
Q ss_pred CEEEEEECCCcEEEEECCCCcccccc
Q 002264 642 NLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
.+|++++.|++++||...+. ++++.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ks 425 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKS 425 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchh
Confidence 99999999999999998766 44433
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.6e-40 Score=305.42 Aligned_cols=291 Identities=16% Similarity=0.253 Sum_probs=262.1
Q ss_pred eEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
..+++. |.+.|.++.|++|.++ ++++|.||.+.|||..+...++ .++-....|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~h-------------------aipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVH-------------------AIPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEccccccee-------------------EEecCceeEEEEEEC
Confidence 345555 9999999999999995 9999999999999988876553 245577899999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCc---ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~ 491 (945)
|.|+++|+|+-|....||++.+.+ ..+....+.+|++.+.|+.|.+|++ |+|+|.|.++.+|| .+|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 999999999999999999998652 2334447889999999999999775 89999999999999 9999999999
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++++. |+..++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999886 6789999999999999999999999999999999999999999999999986 999999999
Q ss_pred CCCceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 572 SEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 572 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
+..+.+..|..... ..+++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||..+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 99988888874332 3588999999999999999999999999999999999987765 99999999999999999999
Q ss_pred CcEEEEE
Q 002264 651 NGFKILA 657 (945)
Q Consensus 651 g~i~iw~ 657 (945)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-39 Score=298.89 Aligned_cols=293 Identities=22% Similarity=0.305 Sum_probs=254.0
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
-+|++.|+.++..+.+..++.+++.|.++.+|++......... ..+.+.||+..|..++.++||++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCce
Confidence 3499999999999998889999999999999998765332211 22458899999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC--CCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~v~ 498 (945)
.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|.. .++||+.|++|++|+.-|.+..++..+ .+.|.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 9999999999999999997665 6889999999999999999 899999999999999777777776654 78899
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++. ++.+.+||++.++.+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNLY 228 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCceeE
Confidence 999999887789999999999999999999999999999999999999999999999884 9999999999999988
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC-------CCCccEEEEcCCCCEEEEEECCC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
.+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+..... .....+++|++||..|+.|..|+
T Consensus 229 sl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 229 SLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred eccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 776543 79999999986555544 455699999999988777654321 22456789999999999999999
Q ss_pred cEEEEECC
Q 002264 652 GFKILANA 659 (945)
Q Consensus 652 ~i~iw~~~ 659 (945)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999874
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-38 Score=320.83 Aligned_cols=467 Identities=14% Similarity=0.217 Sum_probs=352.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|+..|-|+.|+|.... +.++-..|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 7889999999999995 66677899999999999877643 333567899999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~ 500 (945)
+|+.|..|+||+..+++.++ .+.+|...|.+++.+|... +++|+|.|-+|++|| ..-.+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 7889999999999999999 899999999999999 4456789999999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC--CEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
+|+|. |.+.+++++-|++|++|.+....+.+++.+|...|+++.+-+-| .+|++++. |..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99998 55789999999999999999999999999999999999998754 58999885 8999999999999999
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++.||.. .+..++|+|.-..+++|++||+++||+..+.+....+..... .++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999988888876544 8999999998889999988887765 33
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
-.. ...+..++.|+.+.+..+.- . ...+.+-....-..+|+.
T Consensus 298 gre------------------eP~vsMd~~gKIiwa~~~ei-~---------~~~~ks~~~~~ev~DgEr---------- 339 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKIIWAVHSEI-Q---------AVNLKSVGAQKEVTDGER---------- 339 (794)
T ss_pred cCC------------------CCceeecCCccEEEEcCcee-e---------eeeceeccCcccccCCcc----------
Confidence 222 11234445554443211100 0 000000000000011111
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCc
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (945)
..+.......-.-....++-+|+|+ +++++.||...||.-- -|.-
T Consensus 340 --------------L~LsvKeLgs~eiyPq~L~hsPNGr-fV~VcgdGEyiIyTal-----------------a~Rn--- 384 (794)
T KOG0276|consen 340 --------------LPLSVKELGSVEIYPQTLAHSPNGR-FVVVCGDGEYIIYTAL-----------------ALRN--- 384 (794)
T ss_pred --------------ccchhhhccccccchHHhccCCCCc-EEEEecCccEEEEEee-----------------ehhh---
Confidence 1111111001111224577889998 5555667888887410 0110
Q ss_pred ccccccccCCCcCCceeEEeecCCCceEEec-CCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceE
Q 002264 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (945)
Q Consensus 819 ~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~-sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v 897 (945)
...+.-....|++|....|+- +++.|+++ ++++....++..-. +..+. +|.+|...+ ++.+
T Consensus 385 ----------K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i~--gg~Llg~~s-s~~~ 446 (794)
T KOG0276|consen 385 ----------KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGIF--GGPLLGVRS-SDFL 446 (794)
T ss_pred ----------cccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeeec--CCceEEEEe-CCeE
Confidence 134556778999996666666 48889988 66777777653211 33333 566666655 5679
Q ss_pred EEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCc
Q 002264 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 898 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
++||-+++++++++.-. ...+.|+.+|.+++.++.|.
T Consensus 447 ~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 447 CFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred EEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc
Confidence 99999999999998743 45789999999888887765
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-36 Score=284.54 Aligned_cols=249 Identities=18% Similarity=0.230 Sum_probs=227.7
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
++++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ ++++|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 4488999999999999999999999999999999998876555 4555778999999999999 8999999999999
Q ss_pred EeCC-C------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC-CCC
Q 002264 480 WELS-G------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (945)
Q Consensus 480 wd~~-~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 551 (945)
|+.+ . +..+.+.+|.+.+.++.|.. | ..|++++.|.++.+||+++++....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9932 2 23467899999999999865 3 5799999999999999999999999999999999999999 999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
.+++++. |...++||++.+..+++|.+|.. .|+.++|.|+|.-|++|++|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999987 89999999999999999999988 899999999999999999999999999999999999987777778
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|++++||..|++|++|..|.++.+||.-.+
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeecccc
Confidence 999999999999999999999999998655
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=276.46 Aligned_cols=296 Identities=15% Similarity=0.234 Sum_probs=252.2
Q ss_pred ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccC
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~ 585 (945)
.-+|++++.|.+||+|...++.+..++....+.|+.+.+.||++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999987 7789999999865 6889999987
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccc
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
.|..+.|..+|+++++||+||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.+. .+.
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-ccc
Confidence 7999999999999999999999999999997666666543 58999999999999999999999999999765 111
Q ss_pred ccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 666 ~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
..+
T Consensus 160 ~~l----------------------------------------------------------------------------- 162 (311)
T KOG0315|consen 160 HEL----------------------------------------------------------------------------- 162 (311)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 111
Q ss_pred eecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccc
Q 002264 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (945)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (945)
+|+ ....|.++++.|||+.++++...|...+|++..... .+.......+
T Consensus 163 -----------iPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~ 211 (311)
T KOG0315|consen 163 -----------IPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKF 211 (311)
T ss_pred -----------CCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhe
Confidence 111 234678889999999999999999999998754211 0000111124
Q ss_pred cCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecc
Q 002264 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (945)
Q Consensus 826 ~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~ 903 (945)
+. |.+.+..+.+|||+++||++| |.+++||+.++. +.-.++++|...+...+||. |+.+|++|+.|+.+++|++.
T Consensus 212 ~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 QA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred ec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 44 999999999999999999999 888999999987 67778899999999999999 99999999999999999999
Q ss_pred cceEEEEecCCCcceeEEEec
Q 002264 904 VDEVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 904 ~~~~~~~l~~h~~~V~~l~~s 924 (945)
.++.+.+..+|.....+++..
T Consensus 289 ~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 289 AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCceeeecCCcccccEEEEee
Confidence 999999999999888888764
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=303.32 Aligned_cols=342 Identities=20% Similarity=0.296 Sum_probs=275.5
Q ss_pred cCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeecCCCCc-------cccCC---CCCcceEEee--cCCCcEEEEE
Q 002264 284 KHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ-------TWSLD---DLPRTVAVSL--HQGSTVISMD 351 (945)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~---~~~~~~~~~~--~h~~~V~~v~ 351 (945)
++.+++-+.+.++|.+.-......+.-..+....+..+...-. .|.-+ ....+.+++- +-+..|..|.
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v~ 103 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVVR 103 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeEE
Confidence 3444555577888888777766655444332222333322221 22211 1111222222 2456899999
Q ss_pred EeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 002264 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (945)
Q Consensus 352 fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~ 431 (945)
|.|+|++ |++|+..|.+.+|+..+-. |+ .++..|..+|.++.||++|.++++|+.+|.|+
T Consensus 104 WtPeGRR-Lltgs~SGEFtLWNg~~fn------FE-------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 104 WTPEGRR-LLTGSQSGEFTLWNGTSFN------FE-------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred EcCCCce-eEeecccccEEEecCceee------HH-------------HHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 9999997 8999999999999974321 11 34778999999999999999999999999999
Q ss_pred EEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCcc
Q 002264 432 LYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
+|+..-. .++ .+.+| ...|.+++|+|+.. .|+|++.||+|+||| ...+.-..+.+|.-.|.++.|+|.. .
T Consensus 164 yWqpnmn-nVk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--g 235 (464)
T KOG0284|consen 164 YWQPNMN-NVK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--G 235 (464)
T ss_pred ecccchh-hhH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--c
Confidence 9997653 233 34444 48999999999888 899999999999999 8888888889999999999999975 6
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 589 (945)
+++++|.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.++.+++|.+ .+.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DVT 310 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hhe
Confidence 8999999999999999999999999999999999999999999999985 88999999999999999999988 899
Q ss_pred EEEEcCC-CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 590 VVQFDTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 590 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
++.|+|- .+.|.+|+.||.|..|.+...+++..+. +.|...|++++|+|=|.+|++|+.|.++++|.-.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999995 4677789999999999998666666554 3456689999999999999999999999999764
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.2e-35 Score=304.38 Aligned_cols=525 Identities=14% Similarity=0.162 Sum_probs=345.1
Q ss_pred EeecCCCcEEEEEEeCCCC---eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 339 VSLHQGSTVISMDFHPSHQ---TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~---~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
..-+|..+|+|+.|-|+.+ + +++|+.|+.|++|.++...... ...+.+|...+.|+.
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~-----------------i~~~~g~~~~~~cv~-- 108 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIK-----------------IYTIQGHCKECVCVV-- 108 (764)
T ss_pred eccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEE-----------------EEeecCcceeEEEEE--
Confidence 3345999999999999876 5 8999999999999998433321 133566665555543
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC--ceEEEe
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLFNF 490 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~--~~~~~~ 490 (945)
.......+...|+.+.+|+.+..+ +.....+. ....-..|+++.++.+..+++.|+.+..|.++. ..+ +.+..+
T Consensus 109 a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el 187 (764)
T KOG1063|consen 109 ARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAEL 187 (764)
T ss_pred eeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEe
Confidence 333333334689999999995544 11111222 112223466677755555778888888888888 433 456788
Q ss_pred cCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccCCC-----------------e----e---E-------EecCCC
Q 002264 491 EGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG-----------------S----R---V-------DYDAPG 538 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-----------------~----~---~-------~~~~~~ 538 (945)
.||.+.|.+++|..... .-+|+++|.|..||+|.+.... . . . .+.+|.
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 99999999999976543 4688999999999999775332 0 0 0 123688
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEec----cccCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
..|.++.|+|.+..|+++++ |.++.+|...+. --+.... ++........-|+|+++.+++-+..|..++|
T Consensus 268 DWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 89999999999999999987 899999987654 2222221 1222246778899999999999999999999
Q ss_pred ECC-CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
... ........-..+|...|.+++|+|.|.+|.+.+.|.+-|+|-.-..++....+ .....+...+.+++|-+..
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--aRPQiHGyDl~c~~~vn~~-- 419 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--ARPQIHGYDLTCLSFVNED-- 419 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--cccccccccceeeehccCC--
Confidence 832 23334444445677799999999999999999999999999765222221111 1122344445666654421
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceee-ecCCCCC-------C
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV-TMPESTD-------T 763 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~-------~ 763 (945)
..+++|..+.-+|+|+... .-.+.+ .+.+... .
T Consensus 420 -----------------------------------~~FVSgAdEKVlRvF~aPk----~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 420 -----------------------------------LQFVSGADEKVLRVFEAPK----SFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred -----------------------------------ceeeecccceeeeeecCcH----HHHHHHHHHhCccccCchhccc
Confidence 1234555556667777642 111111 1111000 0
Q ss_pred ccceEEEEEecCCCeEEEeeecCeE-EEEeecCCCCCCCCceeeeeccccccCCCc--------ccccccccCCCcCCce
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQ-KLWKWHRNEQNPSGKATASAVPQHWLPSSG--------LLMANDVAGVNLEEAV 834 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~i 834 (945)
...|..+-.|.+.-+.- ...+|.. ..|- +.. .+.....+..+... .+....+-| |...|
T Consensus 461 gA~VpaLGLSnKa~~~~-e~~~G~~~~~~~-et~--------~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--HGyEv 528 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPG-ETNTGGEAAVCA-ETP--------LAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--HGYEV 528 (764)
T ss_pred ccccccccccCCCCccc-ccccccccceee-ecc--------cccCchhccCCChHHHHHHhccchhhHHhcc--CceeE
Confidence 01111222221111000 0001110 0000 000 00000001111111 011223555 99999
Q ss_pred eEEeecCCCceEEecC-CC-----eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce--
Q 002264 835 PCIALSKNDSYVMSAT-GG-----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-- 906 (945)
Q Consensus 835 ~~l~~s~dg~~la~~s-d~-----~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~-- 906 (945)
++++.||+|+++|++. .. .|++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|+++.+|......
T Consensus 529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccch
Confidence 9999999999999996 22 399999999999899999999999999999 99999999999999999986542
Q ss_pred --EEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 907 --VKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 907 --~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.....+.|+..|++..|+||+.+++|+|.|++|+||..
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 12347889999999999999999999999999999986
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=305.88 Aligned_cols=541 Identities=13% Similarity=0.151 Sum_probs=380.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccc--------------------ccccccCC
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF--------------------QASIFKDV 405 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~h 405 (945)
.|- ..|..-|..++++.+.+.+..+||.+.-..+.-... .-+--.|.... ..+.+.+|
T Consensus 36 ~VP-~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~-lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~ 113 (910)
T KOG1539|consen 36 GVP-FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKP-LPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLH 113 (910)
T ss_pred CCc-eeeeecCceEEEEEecCceEEEEeccceEEEEecCC-CCCceEEEEecCceEEEecCcEEEEEEccceEEEEeccc
Confidence 444 666666666788888899999999877655432100 00000000011 11223344
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccccceee-ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~~~~~~-~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
...|.-+. +=|.+++++..++.+.||+..++ +.......+ ....+.|+++. +|..-...++.|+.+|.+.+|+ .
T Consensus 114 ~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvr 190 (910)
T KOG1539|consen 114 GAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVR 190 (910)
T ss_pred cceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEec
Confidence 44444332 34788999999999999999885 221111122 22223377764 3443222688899999999999 9
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
+++.++++.++...|+++.-+|.- ..++.|..+|+|.+++++..+.+.++....+.|++++|.-||..+++.+. .
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~ 265 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---S 265 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---C
Confidence 999999999999999999876654 58999999999999999999999999888889999999999998887764 3
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--Ce--eEEEeecCCCCCCccEEEEc
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VN--ILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s 638 (945)
.|.+.+||+...+.+......+.+.+....|.+....+++++.|+.+++|=.++ |. .++.- .+|..+..++.|.
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R--~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR--GGHSAPPSCIRFY 343 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec--cCCCCCchheeee
Confidence 688999999999888877755544788889999999999999999988875543 42 23333 3455688999998
Q ss_pred -CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 639 -KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 639 -p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
.+|..+.+++.|++++.+++....+....-..+..... .++. .+++. .....++..++.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~-kk~~--~~~~~-----------------~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA-KKVN--VFSTE-----------------KLKLPPIVEFAF 403 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc-cccc--ccchh-----------------hhcCCcceeeec
Confidence 58999999999999999887543111000000000000 0000 00000 000111112222
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceee-ecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCC
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~ 796 (945)
....-....+.++..-.+...+.|+..+.......... .+.. ....+++++.++.|++.+.|.+.|.|-+|++..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~---~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS- 479 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK---DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS- 479 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc---cCcceEEEEEeccCceEEEeccCCeEEEEEccc-
Confidence 22222334445555556677889998764443222111 1111 346789999999999999999999999997643
Q ss_pred CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCe
Q 002264 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
|...........|.++|+.++...-++.+++++ +|-+++||.....++..++ -...+
T Consensus 480 ---------------------Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~ 537 (910)
T KOG1539|consen 480 ---------------------GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSI 537 (910)
T ss_pred ---------------------CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCc
Confidence 222221111123899999999988888899888 9999999999988888877 45678
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+++..+. ...++|.+..|-.|+++|+.+.+.++.+.||++.|++++|||||++|++++.|++||+||++
T Consensus 538 ~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 538 TGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 9999998 77799999999999999999999999999999999999999999999999999999999985
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=271.17 Aligned_cols=286 Identities=15% Similarity=0.245 Sum_probs=239.2
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~ 435 (945)
..-+||++|.|.+|++|...+|.+... +....+.|+.+...||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 335899999999999999999998743 44567889999999999999999764 6999999
Q ss_pred cCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 436 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
.++..- +..++.+|+..|+++.|..+|+ .++|||+||+++|||.......+...|..+|+++..+|. ..-|++|.
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpn--QteLis~d 143 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN--QTELISGD 143 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCC--cceEEeec
Confidence 998753 4558999999999999999999 999999999999999433444455558899999999885 46799999
Q ss_pred cCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC------ceeeEeccccCcce
Q 002264 516 IDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSN 588 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~------~~~~~~~~~~~~~~ 588 (945)
.+|.|++||+........+.. ....|.+++..|||.+++.+.. .|..++|++-+. +++.+++.|.. .+
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~i 218 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HI 218 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eE
Confidence 999999999988766655443 3458999999999999998874 899999998754 35667777776 67
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 002264 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (945)
..+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||.+|++|+.|+.+++|++..+ +.++..
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy 296 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQY 296 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeec
Confidence 77889999999999999999999999988 3333444455568999999999999999999999999999998 556666
Q ss_pred cCCcc
Q 002264 669 ENPPF 673 (945)
Q Consensus 669 ~~~~~ 673 (945)
.+|..
T Consensus 297 ~gh~K 301 (311)
T KOG0315|consen 297 QGHHK 301 (311)
T ss_pred CCccc
Confidence 66554
No 27
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=304.35 Aligned_cols=527 Identities=14% Similarity=0.195 Sum_probs=384.4
Q ss_pred eeecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccc
Q 002264 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF 397 (945)
Q Consensus 318 v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 397 (945)
.+|.+.+..++..............|.+.|.-+. |-|.+ ++++..++.+.||+..+++.... .
T Consensus 88 ~vy~A~g~~i~~~~rgk~i~~~~~~~~a~v~~l~--~fGe~-lia~d~~~~l~vw~~s~~~~e~~--l------------ 150 (910)
T KOG1539|consen 88 YVYVASGNKIYAYARGKHIRHTTLLHGAKVHLLL--PFGEH-LIAVDISNILFVWKTSSIQEELY--L------------ 150 (910)
T ss_pred eEEEecCcEEEEEEccceEEEEeccccceEEEEe--eecce-EEEEEccCcEEEEEecccccccc--c------------
Confidence 4455544443333332222333344766666554 45666 66677899999999887522100 0
Q ss_pred ccccccCCCccEEEEEEcCC--CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 398 QASIFKDVPISVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 398 ~~~~~~~h~~~V~~i~~s~~--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
+...++.....|+++. +|. =+.++.|+.+|.+.+||+++++.+. +++++...|+++.=+|-=. .++.|..+|
T Consensus 151 ~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~---~f~~~~s~IT~ieqsPaLD--VVaiG~~~G 224 (910)
T KOG1539|consen 151 QSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVY---TFQEFFSRITAIEQSPALD--VVAIGLENG 224 (910)
T ss_pred cceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEE---EecccccceeEeccCCcce--EEEEeccCc
Confidence 1111222233377664 453 3568889999999999999998777 7888999999999999877 899999999
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEE
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRL 553 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l 553 (945)
+|.+++ ..++.+.+|+...+.|++++|.-++. ..+++|+..|.+.+||++......... .|.+.+....|.|....+
T Consensus 225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~-p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl 303 (910)
T KOG1539|consen 225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN-PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL 303 (910)
T ss_pred eEEEEEcccCcEEEEEEccccceeEEEeccCCC-eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE
Confidence 999999 88999999996679999999976443 577888888999999999887776554 677789999999999999
Q ss_pred EEEeecCCCCceEE--EEeCCCC--ceeeEeccccCcceEEEEEc-CCCCEEEEEECCCcEEEEECCCCee----EE---
Q 002264 554 FSCGTSKDGDSFLV--EWNESEG--TIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNI----LT--- 621 (945)
Q Consensus 554 ~~~~~~~d~~~~i~--iwd~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~----~~--- 621 (945)
++++. |+.++ ++|...| +.++.-.||.. +..++.|. .+|..+.+++.|++++.+++..... -+
T Consensus 304 ~ta~~----DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 304 VTAGA----DNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred eeccC----CCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 98886 45555 4564444 45555567766 67778776 6788999999999999888653211 00
Q ss_pred --------Ee-ecCCCCCCccEEEEcCC-----CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 622 --------ST-DAEGGLPNLPRLRFSKE-----GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 622 --------~~-~~~~~~~~v~~v~~sp~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
.. ...-...+|..+++... .+.+++.-.+...+.|+..+...-...+...........+.+++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 00 00011235666666542 34566666677899999976522123333332222334466777776
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
-|++. +.|.+.|.|.+|++.++.....+- ....|...|
T Consensus 459 CGNF~-------------------------------------~IG~S~G~Id~fNmQSGi~r~sf~-----~~~ah~~~V 496 (910)
T KOG1539|consen 459 CGNFV-------------------------------------FIGYSKGTIDRFNMQSGIHRKSFG-----DSPAHKGEV 496 (910)
T ss_pred cCceE-------------------------------------EEeccCCeEEEEEcccCeeecccc-----cCccccCce
Confidence 66654 677778999999998654443331 223499999
Q ss_pred EEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE
Q 002264 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la 847 (945)
++++...-++.+++++.+|.+++|++.... +... +. -...++++..+.....+|
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------------------l~~~-l~---l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKV----------------------LKKS-LR---LGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcc----------------------eeee-ec---cCCCcceeeeeehhhhhh
Confidence 999999999999999999999999864321 1110 11 345678888888888899
Q ss_pred ecCC-CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCC
Q 002264 848 SATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 848 ~~sd-~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
.+.| -.|+++|+.+.+.++.+.||.+.|++++||| ||++|++++.|++|++||+.++.++..+. -..+.+++.|||+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn 628 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN 628 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence 8884 5699999999999999999999999999999 99999999999999999999999998876 5678999999999
Q ss_pred cceeeeecCC-ceEEEEe
Q 002264 927 LNILVSSGAD-AQVTLCV 943 (945)
Q Consensus 927 g~~l~s~~~D-g~i~vWd 943 (945)
|.+|||+..| .-|++|.
T Consensus 629 gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCEEEEEEecCceEEEEE
Confidence 9999999888 5689994
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-36 Score=288.46 Aligned_cols=291 Identities=20% Similarity=0.329 Sum_probs=265.6
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..+..+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+... .+.||.+.|..|+|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEE
Confidence 44566677999999999999987 79999999999999999998763 38899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
+..|++||+++.|-.+++||.++- .++.+.+.+|...|.++.|-|.|. +++|++.|.+|+.|+ .+|.++.++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999998763 344447789999999999999998 899999999999999 999999999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC---------------CCEEEEEee
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCGT 558 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~ 558 (945)
...|..+.. ..||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999886 458899999999999999999999999999999999999999764 246666664
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|+.|++||+.++.++.++.+|.+ .|..++|+|.|++|+++.+|+++++||+.++++...+..|.+ -|+++.|+
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 99999999999999999999988 899999999999999999999999999999999999998877 79999999
Q ss_pred CCCCEEEEEECCCcEEEEEC
Q 002264 639 KEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~ 658 (945)
.+..++++|+-|.++++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999975
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9e-35 Score=280.02 Aligned_cols=338 Identities=17% Similarity=0.250 Sum_probs=287.3
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
++..|+..|.+++.+|+.+ +++||+.|....+|+ .+|.....+.+|+..|+++.|+. +|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6778999999999999777 899999999999999 88999999999999999999977 679999999999999999
Q ss_pred ccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
..++.....+......+.-+.|+|.+..|++++. ||.+.+|.+.++...+.+.+|.. .+++-.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988877788999999999999998885 99999999999989999999877 888899999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeee
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 684 (945)
.||+|++|+..+++++..+....+ ....++.++..+..++.|+.++.+.+-+..+++ .+....
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n--------------- 272 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNN--------------- 272 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecC---------------
Confidence 999999999999999988875443 367889999999999999999988887766551 110000
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCc
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 764 (945)
+.+..+ .+. +.
T Consensus 273 --~~~~~l----------------------------------------------------------------~~~---~e 283 (399)
T KOG0296|consen 273 --GTVPEL----------------------------------------------------------------KPS---QE 283 (399)
T ss_pred --CCCccc----------------------------------------------------------------ccc---ch
Confidence 000000 000 00
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
. ....|.++.+|..-.
T Consensus 284 ~----------------------------------------------------------------~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 284 E----------------------------------------------------------------LDESVESIPSSSKLP 299 (399)
T ss_pred h----------------------------------------------------------------hhhhhhhcccccccc
Confidence 0 122344555566667
Q ss_pred eEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEe
Q 002264 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (945)
Q Consensus 845 ~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 923 (945)
+.|+|+ ||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.||.|+.||.++|+++..+.||...|.+++.
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 889999 9999999999887766665 888999999997 458899999999999999999999999999999999999
Q ss_pred cCCcceeeeecCCceEEEEecC
Q 002264 924 STSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 924 s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+|+.++++|+|.|++.+|++.+
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999864
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-35 Score=291.97 Aligned_cols=335 Identities=16% Similarity=0.296 Sum_probs=271.6
Q ss_pred CCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCC--cc-----cccceeecc----ccccEEEEEEecCCCeeEEEEE
Q 002264 404 DVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGS--ND-----LRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~--~~-----~~~~~~~~~----h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
.|+.+|.+.+|+|-.. .+++|+.|-..++|++... .. ++....+.+ .+..|++++|+.+|. .|++|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEe
Confidence 3999999999999766 9999999999999998741 11 111111111 235799999999999 99999
Q ss_pred eCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC
Q 002264 472 GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 472 s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
+.||.+++|+..|..+.++..|.++|.++.|+. .|.+|++++.|+++.+||..++.....+..+..+-..+.|-.+.
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~- 330 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND- 330 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-
Confidence 999999999999999999999999999999965 66899999999999999999999999998888876778886554
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
.+++++. ++.|+++.+....++.++.+|++ .|.++.|.|.+..|++++.|++++||++........+..|.. .
T Consensus 331 ~F~ts~t----d~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--e 403 (524)
T KOG0273|consen 331 EFATSST----DGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--E 403 (524)
T ss_pred eEeecCC----CceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc--c
Confidence 4555554 99999999999999999999887 899999999999999999999999999998888888877654 8
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (945)
|..+.|+|+|... |+..
T Consensus 404 i~t~~wsp~g~v~-----------~n~~---------------------------------------------------- 420 (524)
T KOG0273|consen 404 IYTIKWSPTGPVT-----------SNPN---------------------------------------------------- 420 (524)
T ss_pred eeeEeecCCCCcc-----------CCCc----------------------------------------------------
Confidence 9999999976410 0000
Q ss_pred CCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEE
Q 002264 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (945)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw 791 (945)
++..+++++.|+++++|
T Consensus 421 ---------------------------------------------------------------~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 421 ---------------------------------------------------------------MNLMLASASFDSTVKLW 437 (524)
T ss_pred ---------------------------------------------------------------CCceEEEeecCCeEEEE
Confidence 01124444445555555
Q ss_pred eecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC
Q 002264 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (945)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~ 870 (945)
|+.. |.++.. +.. |..+|++++|||+|+++|+|+ ||.|.+|++++++.++.+.+
T Consensus 438 dv~~----------------------gv~i~~-f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 438 DVES----------------------GVPIHT-LMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred EccC----------------------CceeEe-ecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 4321 111111 222 899999999999999999999 99999999999999999985
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecc
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~ 903 (945)
.+.|..|+|+. +|..|..+..|+.+++-|++
T Consensus 493 -~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 -TGGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -CCeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 56699999999 88999999999999999875
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=268.88 Aligned_cols=248 Identities=18% Similarity=0.258 Sum_probs=215.7
Q ss_pred ccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcc--cccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
..+.+|++.|+.++..+. ...+++++.|.++.+|++..... -...+.+.||...|..++.++||+ ++++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 468899999999999996 67889999999999999865321 122347889999999999999999 8999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCC--CC
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSAD--GS 551 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~--~~ 551 (945)
+++|| .+|+..+.|.+|...|.+++|++ |.+.+++|+.|.+|++|+... .+..++... ...|+++.|+|+ ..
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999 88899999999999999999987 458999999999999999765 444444333 679999999998 67
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
.|++++. |+.+++||+++.+....+.+|.. .++.+.++|||..+++|+.||.+.+||++.++.+..+.. ...
T Consensus 164 ~Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~ 235 (315)
T KOG0279|consen 164 IIVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDI 235 (315)
T ss_pred EEEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCe
Confidence 8888886 99999999999999999999987 899999999999999999999999999999999887754 348
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|.+++|+|+.-+|+.+.. ..|+|||+.++
T Consensus 236 v~sl~fspnrywL~~at~-~sIkIwdl~~~ 264 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATA-TSIKIWDLESK 264 (315)
T ss_pred EeeEEecCCceeEeeccC-CceEEEeccch
Confidence 999999999877776654 46999999877
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.1e-35 Score=279.56 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=258.9
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
..+.+ +|.+.|.|+++.|... ++++|+.|++|+|||+.+|+... .+.||-..|..+++|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~vavS 202 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGVAVS 202 (460)
T ss_pred ehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeeeeec
Confidence 34444 4999999999999987 69999999999999999998764 388999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
+--.||++++.|+.|+.||++..+.++ .+.||-+.|.|++..|.-. .++||+.|.+++||| .+...+..+.||.
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCC
Confidence 999999999999999999999998887 7889999999999999988 899999999999999 8888999999999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++ ...|+.|++..|
T Consensus 278 ~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p~g 350 (460)
T KOG0285|consen 278 NPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLPEG 350 (460)
T ss_pred CcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCCcc
Confidence 999999987753 4699999999999999999999999999999999999999999999987 457999999999
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec---CC---CCCCccEEEEcCCCCEEEEEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA---EG---GLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~---~~~~v~~v~~sp~g~~l~~~~ 648 (945)
..+..+.+|.. .+..++...|+ ++++|+++|.+.+||.++|...+.... ++ ....|.+.+|...|..|++|.
T Consensus 351 ~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 351 EFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred chhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 99999988887 88889888765 889999999999999999876554422 11 123588999999999999999
Q ss_pred CCCcEEEEECCC
Q 002264 649 ADNGFKILANAI 660 (945)
Q Consensus 649 ~dg~i~iw~~~~ 660 (945)
.|.+|++|.-..
T Consensus 429 adKtIk~~keDe 440 (460)
T KOG0285|consen 429 ADKTIKMYKEDE 440 (460)
T ss_pred CCcceEEEeccc
Confidence 999999997653
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=299.83 Aligned_cols=492 Identities=16% Similarity=0.237 Sum_probs=350.2
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+...+..|..++|+|...+++++-..|.|++||..-+..+. .+..|.++|..++|+|++. +|+|||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 45567889999999999999999999999999999988777 6788999999999999999 999999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+.+++.++.||-+.|..+.|++.- .+|+++|.|.+|+||+..+.+++..+.+|.+.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8899999999999999999999854 79999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEEEeCCCCc-----------------------------eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE
Q 002264 561 DGDSFLVEWNESEGT-----------------------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 561 d~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 611 (945)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..+++|+.|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1234567766 7888999999999999999999999
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
|.++..+.-..-...+|.+.|.++-|+|....+++.+.|++|++||+... ..++++..... ....++..|..++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrend-----RFW~laahP~lNL 306 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREND-----RFWILAAHPELNL 306 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCC-----eEEEEEecCCcce
Confidence 99987665544445566779999999999999999999999999999766 45555543332 4678999999999
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEE
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 771 (945)
+++|-.++...+...... ..+...++.++-.- |..|+.+|+....... ...+......-.++.++.
T Consensus 307 fAAgHDsGm~VFkleREr----------pa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~---v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERER----------PAYAVNGNGLFYVK-DRFIRSYDLRTQKDTA---VASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred eeeecCCceEEEEEcccC----------ceEEEcCCEEEEEc-cceEEeeeccccccce---eEeccCCCcccCCcceee
Confidence 988877665544322111 11222233333333 6778888877532222 222222111346778899
Q ss_pred EecCCCeEEEee--ecCeEEEEeecCCCC-CCC--------C---ceeeeeccccccCCCcccccccccC-----CCcCC
Q 002264 772 YTNSAVGLLALG--SNGVQKLWKWHRNEQ-NPS--------G---KATASAVPQHWLPSSGLLMANDVAG-----VNLEE 832 (945)
Q Consensus 772 ~s~dg~~l~~~~--~dg~i~lw~~~~~~~-~~~--------~---~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 832 (945)
++|....+..++ .+|...++.++.... ..+ | -..+...-.+++..+.......+.. .....
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~ 452 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPE 452 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcc
Confidence 999877665554 357777887765421 111 0 0111111122222211111100100 00011
Q ss_pred ceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec
Q 002264 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~ 912 (945)
.+..+-+.-+|.+| ..+...|.+||++..+.+..++ ...|.-+.||+ |...+|--+ ..+|.|.+.. -+.+.++.
T Consensus 453 ~~~~IF~ag~g~ll-l~~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~-dm~~vAll~-Kh~i~i~~kk-L~l~~sih 526 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLL-LRSPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSN-DMSRVALLS-KHTITIADKK-LELLCSIH 526 (1202)
T ss_pred cccceeeccCccEE-EEcCCeEEEEEeecceEEEEEe--cCceeEEEEcC-ccchhhhcc-cceEEEEecc-hhheecch
Confidence 22233344444333 3345679999998877777775 56789999999 777776555 4568888743 33344333
Q ss_pred CCCcceeEEEecCCcceeee
Q 002264 913 GHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 913 ~h~~~V~~l~~s~dg~~l~s 932 (945)
.+-+|.+-+|..+|-++.|
T Consensus 527 -Etiriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 527 -ETIRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred -heeEeeeceeccCceEEEE
Confidence 2345666667666654444
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=270.39 Aligned_cols=287 Identities=17% Similarity=0.219 Sum_probs=247.4
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+...+|+++|..+.|+|+|. ++|||+.|..|.+|++.....- .-.+++|+++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccC
Confidence 45567999999999999999 5999999999999997543321 1347799999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
++.|++++.|.+|+.||+++|++.+ .+++|..-|.++.-+.-|.. ++.|++.|+++++|| .+...++++. ..-.
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999999887 67789999999997666765 788999999999999 6666666654 4567
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-- 574 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-- 574 (945)
+++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++.+. +.++++||++-.
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 88888865 4567999999999999999999999999999999999999999999999987 999999998753
Q ss_pred --ceeeEeccccCc---ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 575 --TIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 575 --~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
+++..+.++... ..-.++|+|++..+-+|+.|..+++||..+...+..+++|. +.|++++|+|...+|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 456777766431 24457899999999999999999999999888888887665 48999999999999999999
Q ss_pred CCcEEEE
Q 002264 650 DNGFKIL 656 (945)
Q Consensus 650 dg~i~iw 656 (945)
|.+|.+=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998863
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=272.36 Aligned_cols=328 Identities=15% Similarity=0.196 Sum_probs=272.8
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
|..|+..|.+++.+|+.+++|||+.|..-.+|++.+|+.+. .+.+|+..|+++.|+.+|. +|+||+.+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 77899999999999999999999999999999999998555 7889999999999999999 999999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.++.....+...-..+.-+.|+|. +.+|++|+.||.+-+|.+........+.+|..++++=.|.|+|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 888888887766677888999994 489999999999999999998888889999999999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC--------C-CCCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------G-GLPN 631 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~-~~~~ 631 (945)
+++|++|++.++.++..+.+.......++.++..+..++.|+.++.+++-+..+|+.+...... . ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999888666666788999999999999999999999999888887766531 0 0112
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (945)
|.++.++..-.+.|+|+-||+|.|||+....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~------------------------------------------------- 319 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAST------------------------------------------------- 319 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccch-------------------------------------------------
Confidence 2233333344445555555555555543220
Q ss_pred CCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEE
Q 002264 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (945)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw 791 (945)
++.
T Consensus 320 ----------------------------------------~R~------------------------------------- 322 (399)
T KOG0296|consen 320 ----------------------------------------LRH------------------------------------- 322 (399)
T ss_pred ----------------------------------------hhe-------------------------------------
Confidence 000
Q ss_pred eecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC
Q 002264 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (945)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~ 870 (945)
... |...|+.+.|-+ ..+|++++ +|+|+.||.++|+++.++.|
T Consensus 323 ---------------------------------~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 323 ---------------------------------ICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ---------------------------------ecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 000 666788888877 45666666 99999999999999999999
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecc
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~ 903 (945)
|...|.+++++| +.+++++++.|++.+|+++.
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 89999999999999999874
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=261.60 Aligned_cols=288 Identities=19% Similarity=0.322 Sum_probs=234.9
Q ss_pred EeecCCCcEEEEEEeCC-CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~-g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.+-+|.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.+++|+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 34459999999999999 76 899999999999999875332210 11234579999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceEEEecCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGH 493 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~~~~ 493 (945)
|++||+|+.|.++.||.-..+ ......++.||...|.+++|+++|. +|++++.|+.|-||. ..+ .+...+..|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 999999999999999986644 4455668999999999999999999 999999999999999 433 467889999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC---CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
...|..+.|+|.. .+|++++.|.+|++|+-... ....++.++...|.+++|++.|..|++++. |+.++||-
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~ 223 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWR 223 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeee
Confidence 9999999999976 59999999999999976532 356788888889999999999999999985 99999998
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe------eEEEeecCCCCCCccEEEEcCC-CCE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNL 643 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~sp~-g~~ 643 (945)
..+ .+.+.+...+..+.|. ...|++++.|+.|++|.-...- .+.. ..+.|...|++++|+|. .+.
T Consensus 224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCc
Confidence 652 2333344467888888 5689999999999999866431 1111 11234448999999994 789
Q ss_pred EEEEECCCcEEEEECC
Q 002264 644 LAVTTADNGFKILANA 659 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~ 659 (945)
|++|++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999874
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-33 Score=286.31 Aligned_cols=437 Identities=15% Similarity=0.209 Sum_probs=316.7
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55589999999999999999999999999999999987777 5656778999999998888 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcC-CCCEEEEEee
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 558 (945)
.+++.++.|..|.+.|.+++.+|.. .++++++.|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999965 69999999999999999875 45678999999999999999 6678899886
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC--CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
|++|++|.+.+..+..++.+|.. .|+++.+-+.| .++++|+.|..|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 79999987644 7999999999999999999999999998866 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCccc
Q 002264 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (945)
|+|.-.++++|+.||+++||+..+- +...++.- --..+.+++-.+.+..++.|+..+...+....
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~-----gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgr--------- 299 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY-----GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGR--------- 299 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc-----CCceEEEEeecCCCCeEEEeccCCcEEEEccC---------
Confidence 9999999999999999999998775 33333321 11246777766666666544443322211111
Q ss_pred CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeec-CeEEEEeecC
Q 002264 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHR 795 (945)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-g~i~lw~~~~ 795 (945)
....+..++.|+.+-+...+ ..+.+-.+..
T Consensus 300 -------------------------------------------------eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~ 330 (794)
T KOG0276|consen 300 -------------------------------------------------EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGA 330 (794)
T ss_pred -------------------------------------------------CCCceeecCCccEEEEcCceeeeeeceeccC
Confidence 11122223333322221111 0000000000
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCC-CcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCC
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGV-NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~ 874 (945)
. .+...|+.+....... .-.-....++-||+|+++++++||.-.||..--.+ - .+-+.
T Consensus 331 ~----------------~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R----n-K~fG~ 389 (794)
T KOG0276|consen 331 Q----------------KEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR----N-KAFGS 389 (794)
T ss_pred c----------------ccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh----h-ccccc
Confidence 0 0222333222111100 01223456888999999999999998888632111 1 13445
Q ss_pred eeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 875 i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
-....|++ |..-.|+-..++.|.++ ++.+....+...-. ..+--.|.+|...+ ++.+++|||+
T Consensus 390 ~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~ 452 (794)
T KOG0276|consen 390 GLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWE 452 (794)
T ss_pred ceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcc
Confidence 67788998 76777778788999998 66666655542211 12222344444444 4457888863
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-33 Score=295.19 Aligned_cols=282 Identities=21% Similarity=0.311 Sum_probs=245.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
.+..|-.++|+|.... +.++-..|.|.+||.+-+..+.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999995 77888899999999998888743 889999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~ 501 (945)
+|+.|-.|+||+.++.+++. ++.||-..|..+.|++.-. +++|+|.|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987766 7889999999999999888 899999999999999 99999999999999999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCC-----------------------------eeEEecCCCCeEEEEEEcCCCCE
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSADGSR 552 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~~~~ 552 (945)
|+|.. ..++++|-|.+||+||+..-. ....+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 589999999999999985210 12245678889999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+++++. |..|++|.+..-+ .+.+..+|.+ .|.++-|+|..+.+++.|+|+.|+|||+.....++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999986 8899999987544 4556788887 899999999999999999999999999999999999876544
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
..+.++.+|..+++|.|-+ +.+.+|.++
T Consensus 294 RFW~laahP~lNLfAAgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHD-SGMIVFKLE 321 (1202)
T ss_pred eEEEEEecCCcceeeeecC-CceEEEEEc
Confidence 7899999999998887654 445555554
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=273.57 Aligned_cols=497 Identities=16% Similarity=0.208 Sum_probs=353.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcC--------cEEEEEcCCCCcccccccccccccccCcccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--------EITLWELAMRDRLVSKPFKIWDMAACSLPFQ 398 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (945)
+++.+. ....+.++|+..|.|++.+||.- .+++|-..| .|+|||..+-..+
T Consensus 89 l~n~ee--~~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL------------------ 147 (626)
T KOG2106|consen 89 LYNWEE--RSQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTL------------------ 147 (626)
T ss_pred EEeehh--hhcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceee------------------
Confidence 444432 34566788999999999999986 477775444 5899997665544
Q ss_pred cccccCCCccEEEEEEcC--CCCEEEEE--ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 399 ASIFKDVPISVSRVAWSP--DGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 399 ~~~~~~h~~~V~~i~~s~--~g~~las~--~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.++..-...|.|++||+ .|.+|+.- +.+..+.+||...+.... ....-+..|....|.|.+.. ++++++ .
T Consensus 148 -~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k 221 (626)
T KOG2106|consen 148 -HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-K 221 (626)
T ss_pred -eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-C
Confidence 23445667899999999 35566554 345668999998876655 34456778999999999886 666666 7
Q ss_pred CcEEEEe-CCCceEE---EecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 475 KLIKVWE-LSGRKLF---NFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~---~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
+.+.+|+ ..+.... .|..+ ...|.|++|.++++ +++|..+|.|.||+..+.........|.+.|.+++.-.+
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC
Confidence 8999999 5554432 23333 35699999977543 889999999999998777666666689999999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
|..|- ++ +|..|..|| ..-+.++..+-.. .+.++.++- .+.-|++|...+.|..=.++++-.+..+ +|+
T Consensus 299 GtllS-Gg----KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e--~~~di~vGTtrN~iL~Gt~~~~f~~~v~-gh~- 368 (626)
T KOG2106|consen 299 GTLLS-GG----KDRKIILWD-DNYRKLRETELPEQFGPIRTVAE--GKGDILVGTTRNFILQGTLENGFTLTVQ-GHG- 368 (626)
T ss_pred ccEee-cC----ccceEEecc-ccccccccccCchhcCCeeEEec--CCCcEEEeeccceEEEeeecCCceEEEE-ecc-
Confidence 98665 66 499999999 3333333332221 124555543 3333888888888777677666544443 333
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (945)
.....++.+|+...+++++.|+.+++|+ .. ++.-. .....+..++.|.|.| .++
T Consensus 369 -delwgla~hps~~q~~T~gqdk~v~lW~-~~--k~~wt------~~~~d~~~~~~fhpsg-~va--------------- 422 (626)
T KOG2106|consen 369 -DELWGLATHPSKNQLLTCGQDKHVRLWN-DH--KLEWT------KIIEDPAECADFHPSG-VVA--------------- 422 (626)
T ss_pred -cceeeEEcCCChhheeeccCcceEEEcc-CC--ceeEE------EEecCceeEeeccCcc-eEE---------------
Confidence 3789999999999999999999999999 22 22211 1123467788999888 553
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i 788 (945)
.|...|...+.|... .... ++.. ....+.+++|+|+|.+|+.++.|+.|
T Consensus 423 ----------------------~Gt~~G~w~V~d~e~----~~lv--~~~~---d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 423 ----------------------VGTATGRWFVLDTET----QDLV--TIHT---DNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred ----------------------EeeccceEEEEeccc----ceeE--EEEe---cCCceEEEEEcCCCCEEEEecCCCeE
Confidence 444445555566543 1111 1111 35789999999999999999999999
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEE-
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT- 866 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~- 866 (945)
.+|.+..+.+. +.. .+..+..+|+.+.||+|++++.+-+ |-.|..|.....+...
T Consensus 472 yiy~Vs~~g~~---------------------y~r--~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 472 YIYRVSANGRK---------------------YSR--VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred EEEEECCCCcE---------------------EEE--eeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 99987543321 111 0111457899999999999999999 7779999433211111
Q ss_pred -------------Ee----cCCCCCeeEEEeecCCCceEEEeecCceEEEEecccc---eEEEEecCCCcceeEEEecCC
Q 002264 867 -------------TF----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 867 -------------~~----~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~d 926 (945)
-| ..+...|..++-+. ..+++|+|.+.|.|++|...-. ..-..+.+|++.|++++|+.+
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK 607 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC
Confidence 11 12444577777887 8899999999999999987632 234567889999999999999
Q ss_pred cceeeeecCCceEEEEec
Q 002264 927 LNILVSSGADAQVTLCVE 944 (945)
Q Consensus 927 g~~l~s~~~Dg~i~vWdl 944 (945)
..+|++.+.|.+|..|++
T Consensus 608 d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEecCCCceEEEEEe
Confidence 999999999999999986
No 40
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.3e-33 Score=289.04 Aligned_cols=478 Identities=12% Similarity=0.135 Sum_probs=332.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC-cCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
+|++.. ++.+.....|+-.|+|++|+|.++|++-+|+. |-.|.+||++........ .-
T Consensus 106 Vw~la~-h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn--------------------ki 164 (1080)
T KOG1408|consen 106 VWSLAF-HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN--------------------KI 164 (1080)
T ss_pred eeeecc-ccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc--------------------cc
Confidence 787765 23444455699999999999999985556654 567889998765544321 13
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec----------------------------------cc-
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID----------------------------------AH- 450 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~----------------------------------~h- 450 (945)
...|..++|+.||.|+++++. ..|++|.++.++.++....+. ||
T Consensus 165 ss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhL 243 (1080)
T KOG1408|consen 165 SSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHL 243 (1080)
T ss_pred ceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccce
Confidence 467999999999999999864 679999998765321110000 00
Q ss_pred ----------------cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC---------------C-----
Q 002264 451 ----------------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG---------------H----- 493 (945)
Q Consensus 451 ----------------~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~---------------~----- 493 (945)
+....|++.+ .. +++.|+.+|.|++|+ .+-..+.++.. |
T Consensus 244 vEFSsRRLLDKWVqcRTTnAnCIcVs--~r--~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~ 319 (1080)
T KOG1408|consen 244 VEFSSRRLLDKWVQCRTTNANCICVS--SR--LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSES 319 (1080)
T ss_pred eeechhhhhhhhhhhhccccceeeee--cc--eEEEeeccceeeecCcchhhhccccccccccccchhhccccccccccc
Confidence 0011223333 33 789999999999998 54333322210 0
Q ss_pred --CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCC-----------CCEEEEEe
Q 002264 494 --EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSAD-----------GSRLFSCG 557 (945)
Q Consensus 494 --~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~-----------~~~l~~~~ 557 (945)
....-+|+..+++....|.....|..+++||++....+ ..+..|...|..+..-|- ...+++|+
T Consensus 320 ~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 320 SPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred CcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 00112333333444578889999999999999875543 344456666665544331 12367777
Q ss_pred ecCCCCceEEEEeCCCCceeeEec------------------------------------cccCcceEEEEEcCCCCEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYA------------------------------------GFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~l~ 601 (945)
. |++|++||+..+..-..+. ......+.+++++|+|++|+
T Consensus 400 s----D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA 475 (1080)
T KOG1408|consen 400 S----DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA 475 (1080)
T ss_pred C----CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence 5 9999999987521110000 00112478899999999999
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+|..-|+++||++..-+....++.|.. .|.|+.|+. ..++||+++.|..|.++|+.....+++++.+|..
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHes--EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs----- 548 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHES--EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS----- 548 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccc--eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc-----
Confidence 999999999999999888888887765 899999986 4578999999999999999888777888877655
Q ss_pred cceeeeecccc--cceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeee
Q 002264 679 PIESVALKVSA--SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (945)
Q Consensus 679 ~i~~v~~s~~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (945)
.|+++.|...| ..+ ++++.|..|.+--.........+...+
T Consensus 549 sITsvKFa~~gln~~M-------------------------------------iscGADksimFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKM-------------------------------------ISCGADKSIMFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred ceeEEEEeecCCceEE-------------------------------------EeccCchhhheehhccccCceeccccc
Confidence 58889887766 333 344444444322211100011111000
Q ss_pred cCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeE
Q 002264 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (945)
Q Consensus 757 ~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 836 (945)
- ......+..+++.|..+++++++.|..|+||+++... ..+..-....|.+..-.
T Consensus 592 ~---t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK----------------------q~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 592 Q---TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK----------------------QVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred c---ccccceEEEeeeCCCcceEEEEecccceEEEeccccc----------------------eeeeecccccCCCceEE
Confidence 0 0134568899999999999999999999999875433 22111111236677788
Q ss_pred EeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 837 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 837 l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
+...|.|-|+|+.. |.++.++|..+++++.++.||...|+.+.|++ |-+.|++.+.||.|.||.+..
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEEEECch
Confidence 89999999999987 88899999999999999999999999999999 899999999999999999863
No 41
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.8e-33 Score=288.08 Aligned_cols=571 Identities=16% Similarity=0.218 Sum_probs=368.4
Q ss_pred eecCCCCc---cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCc
Q 002264 319 TYSSSRHQ---TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (945)
Q Consensus 319 ~~~~~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (945)
..+++.++ +|.+....-.....+++ ..+.|++++..-. ...+...|+++.+||.+..+......++
T Consensus 72 ~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~-~~~~~~ad~~v~vw~~~~~e~~~~~~~r--------- 140 (764)
T KOG1063|consen 72 MVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSS-VMTCKAADGTVSVWDKQQDEVFLLAVLR--------- 140 (764)
T ss_pred EEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeee-EEEeeccCceEEEeecCCCceeeehhee---------
Confidence 34444444 89888555556666665 4556666665443 2333367999999998555422111111
Q ss_pred ccccccccCCCccEEEEEEcC-CCCE-EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCC-eeEEEEEe
Q 002264 396 PFQASIFKDVPISVSRVAWSP-DGNY-VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCG 472 (945)
Q Consensus 396 ~~~~~~~~~h~~~V~~i~~s~-~g~~-las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~~~l~s~s 472 (945)
+.-...--.|+++.| .+.+ +|.|+.+..|.++.-..+ ..+....+.||.+.|.+++|...+. .++++|+|
T Consensus 141 ------f~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S 213 (764)
T KOG1063|consen 141 ------FEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAELEGHTDWIRSLAFARLGGDDLLLASSS 213 (764)
T ss_pred ------hhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEeeccchhhhhhhhhccCCCcEEEEecC
Confidence 111122334666666 3443 566777778888876643 4455568999999999999998765 66999999
Q ss_pred CCCcEEEEe--CCC--------------------ceEEE----------ecCCCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 473 DDKLIKVWE--LSG--------------------RKLFN----------FEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 473 ~d~~i~vwd--~~~--------------------~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
.|..||+|. ..+ ..+.. +.||.+.|+++.|+| .+..|++++.|.++
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksm 291 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSM 291 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcce
Confidence 999999998 332 11111 248999999999988 44789999999999
Q ss_pred EEEEccCCCeeEE-------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---CceeeEeccccCcceEE
Q 002264 521 KAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGV 590 (945)
Q Consensus 521 ~iwd~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~ 590 (945)
.+|..+....+.. ..+.........|+|++..+++-+. .|..++|.... ......+.||.+ .|..
T Consensus 292 iiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~----~Gg~hlWkt~d~~~w~~~~~iSGH~~-~V~d 366 (764)
T KOG1063|consen 292 IIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR----TGGFHLWKTKDKTFWTQEPVISGHVD-GVKD 366 (764)
T ss_pred EEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc----cCcEEEEeccCccceeeccccccccc-ccee
Confidence 9998776544332 1222335788899999999998886 88899998332 233445667776 7999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC----eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc-ccc
Q 002264 591 VQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-RSL 665 (945)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~-~~~ 665 (945)
+.|+|.|.++++.|.|.+-++|-.-.. ..+..-+.|++ .++|+++-+....+++|.+...+|+|+..... ..+
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy--Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY--DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccc--cceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 999999999999999999999875421 23333345555 78999998866678888888899999874320 000
Q ss_pred ccccC-----CccccccCcceeeeeccc---------ccceecc----CCCCCccc------------cccCCCCCC--C
Q 002264 666 RAVEN-----PPFEALRTPIESVALKVS---------ASSAVSS----GTPANCKV------------ERSSPVRPS--P 713 (945)
Q Consensus 666 ~~~~~-----~~~~~~~~~i~~v~~s~~---------g~~l~~~----~~~~~~~~------------~~~~~~~~~--~ 713 (945)
..+.+ .........+..+-+|.+ |..-+.. .....+.+ .+....... -
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 00000 000000111111111111 1100000 00000000 000000000 0
Q ss_pred cccCCCCCccCCCCCccccCCCC-----CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE
Q 002264 714 IINGVDPTSRSMDKPRTVDDVTD-----KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (945)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i 788 (945)
.+.-.....+++++.++++.... .|++|+..+-... ..+++ |+-.|+.++|||||++|++++.|.++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-----~~L~~---HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-----QELEG---HSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-----heecc---cceEEEEEEECCCCcEEEEeecCceE
Confidence 01112234566777777765543 3678887642111 13444 99999999999999999999999999
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCc--eEE
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF--KVM 865 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~--~~~ 865 (945)
.+|+....... ..... ... .|..-|+++.|+||+.++|++| |.+|+||..... +.+
T Consensus 597 sl~~~~~~~~~------------------e~~fa-~~k--~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 597 SLYEVQEDIKD------------------EFRFA-CLK--AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred Eeeeeecccch------------------hhhhc-ccc--ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 99986432110 00000 022 2999999999999999999999 899999998876 333
Q ss_pred EE--ecCCCCCeeEEEeecCCCc----eEEEeecCceEEEEecc------c-c--e---EEEEecCCCcceeEEEecCC-
Q 002264 866 TT--FMSPPPASTFLAFHPQDNN----IIAIGTEDSTIHIYNVR------V-D--E---VKSKLKGHQKRITGLAFSTS- 926 (945)
Q Consensus 866 ~~--~~~h~~~i~~l~~s~~~~~----~lasg~~dg~v~vwd~~------~-~--~---~~~~l~~h~~~V~~l~~s~d- 926 (945)
.. ...+...|++++|.|-+.+ .+++|.+.|.|.+|... + + . .+....+|.+.|+.+.|+|.
T Consensus 656 ~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~ 735 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC 735 (764)
T ss_pred hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc
Confidence 33 2347888999999875443 88999999999999965 1 1 1 11223458889999999975
Q ss_pred ---------cceeeeecCCceEEEEecC
Q 002264 927 ---------LNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 927 ---------g~~l~s~~~Dg~i~vWdl~ 945 (945)
...|++|+.|.+++++++.
T Consensus 736 ~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 736 SDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccccceeEEeeecccceeEEeecc
Confidence 2357999999999999863
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-34 Score=275.15 Aligned_cols=321 Identities=16% Similarity=0.242 Sum_probs=269.1
Q ss_pred EEEEeCCCcEEE---EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEE
Q 002264 468 VVTCGDDKLIKV---WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 468 l~s~s~d~~i~v---wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 544 (945)
++.|..-+..+. |-......+.+.+|..+|+.+-|+|.. ..+++++.|++|++||..+++....+.+|...+..+
T Consensus 79 l~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di 156 (406)
T KOG0295|consen 79 LIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDI 156 (406)
T ss_pred cccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEE
Confidence 444443333333 433445567788999999999998854 688889999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 545 LYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+|+..|+++++++. |-.+.+||..+ .++++...+|.. .+.+++|-|.|.++++++.|.+|+.|+..++-++.++
T Consensus 157 ~~~a~Gk~l~tcSs----Dl~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 157 SFDASGKYLATCSS----DLSAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred EEecCccEEEecCC----ccchhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 99999999999986 76799999887 567777778776 8999999999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
.+|.. .|..++.+.||.++|+++.|.++++|-+.++ ++...+..
T Consensus 232 ~~h~e--wvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~--------------------------------- 275 (406)
T KOG0295|consen 232 PGHSE--WVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELRE--------------------------------- 275 (406)
T ss_pred cCchH--hEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhc---------------------------------
Confidence 88765 8999999999999999999999999999877 33333332
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
|.-.|.+++|.|...+ ...
T Consensus 276 -----------------------------------------------------------hEh~vEci~wap~~~~--~~i 294 (406)
T KOG0295|consen 276 -----------------------------------------------------------HEHPVECIAWAPESSY--PSI 294 (406)
T ss_pred -----------------------------------------------------------cccceEEEEecccccC--cch
Confidence 4445555555554320 000
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCc
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF 862 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~ 862 (945)
.+ .. .+.. .++++++++ |++|++||+.++
T Consensus 295 ~~---------------------------------------at---~~~~--------~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 295 SE---------------------------------------AT---GSTN--------GGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred hh---------------------------------------cc---CCCC--------CccEEEeecccceEEEEeccCC
Confidence 00 00 0000 567899999 999999999999
Q ss_pred eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 863 ~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
.++.++.+|.+.|..++|+| +|++|+++.+|++++|||+.+++|+..+.+|..-|+++.|..+..+++||+-|.++++|
T Consensus 325 ~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred eEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 002264 943 V 943 (945)
Q Consensus 943 d 943 (945)
.
T Consensus 404 E 404 (406)
T KOG0295|consen 404 E 404 (406)
T ss_pred e
Confidence 6
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=255.04 Aligned_cols=288 Identities=17% Similarity=0.242 Sum_probs=248.4
Q ss_pred CcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
|....+++. |.+.|.++.|+-||+| .++++.|.+|++|+...|..++ .+.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeeec
Confidence 444455555 8999999999999997 6777789999999999998874 388999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe---CCCceEEE
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFN 489 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd---~~~~~~~~ 489 (945)
+.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998888 7889999999999999998 999999999999999 44578889
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+......|.++.+. +..|++|+.||+++.||++.+.....+ -+++|++++|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 98889999999874 367999999999999999987765543 4568999999999999999886 8999999
Q ss_pred eCCCCceeeEeccccCcce-EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
|-.+|++++.+.+|.+... ..+++.....++++|++||.|++||+.....+..+..+.. ..|.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999987442 3367777888999999999999999999999999887764 2489999999877777765
Q ss_pred CCCcEEEEEC
Q 002264 649 ADNGFKILAN 658 (945)
Q Consensus 649 ~dg~i~iw~~ 658 (945)
. +.+.+|--
T Consensus 290 ~-~~~~~~~~ 298 (307)
T KOG0316|consen 290 G-HGDLFWYQ 298 (307)
T ss_pred C-Cceeceee
Confidence 3 45666644
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=270.23 Aligned_cols=246 Identities=17% Similarity=0.293 Sum_probs=227.4
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.++.+|.+.|.|+++.|...++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 5689999999999999999999999999999999999996554 7889999999999999988 9999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| ...+.++.+.||-+.|+|++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-...+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8889999999999999999999965 68999999999999999999999999999999999999998889999986
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|++|++||++.|+...++..|.. .+.+++.+|....|++++.| .|+-|++..|..+..+..+. ..|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeeec
Confidence 99999999999999999988877 89999999999889888877 69999999999988876654 478999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|| ++++|+++|.+.+||.+++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 875 7889999999999999988
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-33 Score=305.84 Aligned_cols=285 Identities=22% Similarity=0.378 Sum_probs=250.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC--cccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ .. ..+.+|...|.+++|+|+|++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~-------------------~~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLL-------------------RELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhh-------------------ccccccccceeeeEECCCCcE
Confidence 5789999999999996 9999999999999996665 22 235789999999999999999
Q ss_pred EEEEECCCcEEEEEc-cCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+++|+.|++|++||+ ..+..++ ++.+|...|++++|+|+|+ .+++|+.|++|++|| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 77999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCC--eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
+++|.+ ++.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999976 66899999999999999999988 3455554444 5999999999999999986 889999999999
Q ss_pred ceeeEeccccCc--ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE--CC
Q 002264 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (945)
Q Consensus 575 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~--~d 650 (945)
.....+.+|... .+.....++.+.++++|+.|+.|++|+..++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 23334557789999999999999999999999998888874 45889999999999999998 68
Q ss_pred CcEEEEECC
Q 002264 651 NGFKILANA 659 (945)
Q Consensus 651 g~i~iw~~~ 659 (945)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 899999753
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=258.85 Aligned_cols=251 Identities=18% Similarity=0.301 Sum_probs=219.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .++++|.|++++.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3478999999999999999999999999999999976532 33346789999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+|+.++++++|...|+++..... +..++.+++.||++++||+++......+.. ..+++++.|..++..+++++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc
Confidence 99 999999999999999999984432 346788999999999999998777766533 346899999999999999997
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeeEEEeecCCCCC--Cc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLP--NL 632 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 632 (945)
|+.|++||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++. ..++..+.++.|.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88899999999999999999998 899999999999999999999999999875 34577777665532 24
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..++|+|++..+..|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 57899999999999999999999998654
No 47
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.7e-31 Score=264.13 Aligned_cols=467 Identities=15% Similarity=0.188 Sum_probs=330.9
Q ss_pred EEeec-CCCcEEEEEEeCC--CCeEEEEE-eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 338 AVSLH-QGSTVISMDFHPS--HQTLLLVG-SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 338 ~~~~~-h~~~V~~v~fsp~--g~~llasg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
.+.++ -...|+|++||+- |..+++.- +.+.-+.+||++.+..... .......|....
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~ 207 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLAT 207 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEE
Confidence 34444 5668999999984 44333332 3456788999988776532 333567889999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~ 491 (945)
|.|.+..|+.....|.+.+|+.+++...+....+.++ +..|.|++|.++|+ ++||..+|.|.||+ ...+..+...
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~ 284 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVH 284 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEee
Confidence 9997766666666789999999998877766556544 35799999999998 79999999999999 5556666666
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
.|.+.|.+++... +| .|++|+.|+.|..|| ..-+.... +....+.|..++-. +.-+++++. .+.|..=
T Consensus 285 aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~--~~di~vGTt----rN~iL~G 354 (626)
T KOG2106|consen 285 AHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEG--KGDILVGTT----RNFILQG 354 (626)
T ss_pred ecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecC--CCcEEEeec----cceEEEe
Confidence 9999999999765 44 566799999999999 33333333 33334567766533 223666654 4445444
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
.+.++ ......+|.+ ....++.+|+.+.+++++.|+.+++|+ ..+++...... .++.++.|+|.| .+|.|+.
T Consensus 355 t~~~~-f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 355 TLENG-FTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred eecCC-ceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeec
Confidence 44433 3334556666 788899999999999999999999999 44555444432 267999999999 9999999
Q ss_pred CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCc
Q 002264 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (945)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (945)
.|...+.|.++. ..+.... . ..++.++.|+|+|.++
T Consensus 427 ~G~w~V~d~e~~-~lv~~~~---d---~~~ls~v~ysp~G~~l------------------------------------- 462 (626)
T KOG2106|consen 427 TGRWFVLDTETQ-DLVTIHT---D---NEQLSVVRYSPDGAFL------------------------------------- 462 (626)
T ss_pred cceEEEEecccc-eeEEEEe---c---CCceEEEEEcCCCCEE-------------------------------------
Confidence 999999999874 3332221 1 4578999999998877
Q ss_pred cccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeec
Q 002264 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (945)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (945)
+.|+.|+.|++|.+..... .+.. ... . +.+.|+.+.||+|++++.+.+.|-.|..|. +... ++.......
T Consensus 463 Avgs~d~~iyiy~Vs~~g~--~y~r--~~k-~-~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~--~~~ts~kDv- 532 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGR--KYSR--VGK-C-SGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSEC--KQITSVKDV- 532 (626)
T ss_pred EEecCCCeEEEEEECCCCc--EEEE--eee-e-cCceeEEeeecCCCceEEeccCceEEEEEc-cccC--cccceecce-
Confidence 6888889999999874211 1111 111 1 338899999999999999999999999993 2211 111111110
Q ss_pred cccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC---ceEEEEecCCCCCeeEEEeecCCC
Q 002264 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT---FKVMTTFMSPPPASTFLAFHPQDN 885 (945)
Q Consensus 810 ~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~---~~~~~~~~~h~~~i~~l~~s~~~~ 885 (945)
-|-..+-.+-. ...+..+...|..++-|.+.+.+|+|. .|+|++|...- ......+.+|++.|++++|+. +.
T Consensus 533 --kW~t~~c~lGF-~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~-~d 608 (626)
T KOG2106|consen 533 --KWATYTCTLGF-EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC-KD 608 (626)
T ss_pred --eeeeeEEEEEE-EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee-CC
Confidence 12211111111 111234778899999999999999999 59999998653 234567889999999999999 55
Q ss_pred ceEEEeecCceEEEEec
Q 002264 886 NIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 886 ~~lasg~~dg~v~vwd~ 902 (945)
..+.+.+.|.+|..|++
T Consensus 609 ~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 609 SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceEEecCCCceEEEEEe
Confidence 56666669999999986
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.2e-34 Score=284.80 Aligned_cols=293 Identities=18% Similarity=0.290 Sum_probs=248.7
Q ss_pred CCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEE
Q 002264 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (945)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (945)
+|...++++. |...|+++.|.|..-.||++|+.|+.|+||++.. ++++ +.+.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-------------------rtf~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-------------------RTFKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-------------------hhhhcchhhhh
Confidence 3556666665 9999999999994445899999999999999977 5554 45889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+++|+++|..+++++.|+.|++||+++|+++.. +. -...++|+.|.|++.. .|++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987763 21 3457899999999955 889999999999999 99999999
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
+..|-+.|..+.|.+ +|..+++.+.|+++++|+.+....+.... .......++..+|++.++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999976 66899999999999999998876665433 33457789999999999998876 889999
Q ss_pred EeCCCC---ceeeEeccccCcc-eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCE
Q 002264 569 WNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (945)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~ 643 (945)
+.+... ...+.|.+|.... ...+.|||||.+|++|..||.+.+||.++.+++..+..|.. ++..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986542 3345677775433 34589999999999999999999999999999999988744 899999999 4568
Q ss_pred EEEEECCCcEEEEE
Q 002264 644 LAVTTADNGFKILA 657 (945)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (945)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.5e-33 Score=267.14 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=233.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....|+|+++..+ .+++|..|.+|+|||.++...+ .++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~-------------------~~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECL-------------------KILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHH-------------------HhhhcCCCcEEeeecc--ceEEE
Confidence 3468999999633 4899999999999999887665 4589999999999985 66999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecCCCCCEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~~~~~v~ 498 (945)
+|+.|.+|++||+++|++++ ++-+|...|..+.|+.. +++|++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 77789999999999853 899999999999999 4332 3356789999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
.+.|. .+++++++.|.+|++|++.+.+.+..+.+|...|-|+.+ .|++++++++ |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 379999999999999999999999999999998888876 4788888876 9999999999999999
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE-------EeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT-------STDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
.++||.. -+.++.|. .+.+++|+.||+|++||+..+.... ....-.+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999987 89999996 5789999999999999998764321 1122234457888888 556888999999
Q ss_pred cEEEEECCCCc
Q 002264 652 GFKILANAIGL 662 (945)
Q Consensus 652 ~i~iw~~~~~~ 662 (945)
+|.|||..++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.4e-33 Score=271.25 Aligned_cols=240 Identities=15% Similarity=0.275 Sum_probs=215.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
...|..+.|.|+|+.|++|+..|.+.+|+..+-. .+ ..++.|..+|.++.|+++|. +++||+.+|.|++|+.+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FE--tilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FE--TILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-HH--HHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4589999999999999999999999999964321 11 14568999999999999999 8999999999999996666
Q ss_pred eEEEecCCC-CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 486 KLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 486 ~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.++.+.+|. ..|.+++|+|. | ..+++++.||+|+|||.........+.+|+-.|.++.|+|....+++++. |.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn-D-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----Dn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN-D-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----DN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC-C-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----Cc
Confidence 667777665 89999999984 3 68999999999999999999888889999999999999999999999985 77
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~ 643 (945)
.|++||.+++.++.++.+|.. .|..+.|++++++|+++|.|..++++|+++.+.+..+.+|.. .|++++|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccc
Confidence 999999999999999999988 899999999999999999999999999998888888877654 899999999 6778
Q ss_pred EEEEECCCcEEEEECC
Q 002264 644 LAVTTADNGFKILANA 659 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~ 659 (945)
|.+|+.||.|..|.+.
T Consensus 322 ftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVG 337 (464)
T ss_pred eeeccCCCceEEEecc
Confidence 9999999999999886
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-29 Score=259.55 Aligned_cols=520 Identities=13% Similarity=0.152 Sum_probs=354.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC-CccEEEEEEcCCCCEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~s~~g~~l 421 (945)
...+|.|+|||.+.+. ||.|-.||.|.||++..+=.. ..++.++ ...|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 4569999999999985 899999999999999874322 1334554 5789999999 55567
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE--EEecCCCCCEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVY 498 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~--~~~~~~~~~v~ 498 (945)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+..++ ..+... ..|...++.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788889999999999987766 6667888999999999998 889999999777777 444433 23444568899
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-----C---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----A---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
+++|++ ++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .++++- ..|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEc
Confidence 999977 55789999999999999999888776221 1 22256777777555 455553 489999999
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee--EEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
...+.+++.+..|.. .+.+++..+++++++++|.|+.|.-|...++.. +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999887 899999999999999999999999998876533 222222233348999999887 899999
Q ss_pred CCCcEEEEECCCCccccccccCCccccccCcce-eeeecccccceeccCCCCCccccccCCCCC---------CCccc--
Q 002264 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIE-SVALKVSASSAVSSGTPANCKVERSSPVRP---------SPIIN-- 716 (945)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~---------~~~~~-- 716 (945)
.|.++.+-....-. ...|.... .-+-. .+...|..++++ -.......+++...... .....
T Consensus 309 ~d~~l~i~~s~~~~-----~~~h~~~~-~~p~~~~v~~a~~~~L~~-~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 309 RDFTLAICSSREFK-----NMDHRQKN-LFPASDRVSVAPENRLLV-LWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred eeeEEEEccccccC-----chhhhccc-cccccceeecCccceEEE-EeccccccceeccCcccccccChhhheeeecCC
Confidence 99999887654310 00010000 00000 111222222211 11111111122111100 00000
Q ss_pred ---CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEe
Q 002264 717 ---GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWK 792 (945)
Q Consensus 717 ---~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~ 792 (945)
-.....+|+|++++.+.- ...++|.+.... ..............-....+.|+-|+..++.++ ....+.+.+
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~---~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e 457 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTV-SRTKIYRLQPDP---NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE 457 (691)
T ss_pred ccceeeeccCCCCCEEEEeec-cceEEEEeccCc---ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence 123457899999888876 566777776422 222222222222445677889999998888887 566777666
Q ss_pred ecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCC
Q 002264 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (945)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h 871 (945)
++.+.+..... +........|..++.|+||+|+|+.+ .|.|.+|++.+++........
T Consensus 458 l~~ps~kel~~---------------------~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 458 LETPSFKELKS---------------------IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred ecCcchhhhhc---------------------cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 54332211100 00101456799999999999999998 899999999988775555345
Q ss_pred CCCeeEEEeecCCCceEEEeecCceEEEEecccceE-----------EEEecCCCcceeEEEecCCcce
Q 002264 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-----------KSKLKGHQKRITGLAFSTSLNI 929 (945)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~-----------~~~l~~h~~~V~~l~~s~dg~~ 929 (945)
...|++++|+|.+...|+.+..+++|+-||++..+. -...+.-...+..+.|.|..+.
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s 585 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSS 585 (691)
T ss_pred CcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCcc
Confidence 688999999976888999999999999999953321 1111223356778888765443
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.9e-31 Score=278.19 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=249.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
+|.++|++++|+|+++ +|++|+.||.|.+|++.+++... .+.+|...+.++.|+|+++++
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5899999999999998 58899999999999998776432 256788899999999999999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
++++.||.|++|++.+++.+. .+..|...|.++.|++++. ++++++.|+.+++|| .+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999875555 5668998999999999987 788888899999999 6688888888999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99875 578888888999999999988888888888889999999999999998875 889999999999888888
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..+.. .+..+.|++++.++++++.||.|++|++.++.....+..+. ..|.+++|+|+++++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77765 78899999998888888889999999999988888887543 4899999999999999999999999995
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-32 Score=288.14 Aligned_cols=245 Identities=19% Similarity=0.345 Sum_probs=225.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--------cc--------------------ccceeeccccccEEEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------DL--------------------RQHSQIDAHVGAVNDL 457 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~v~~l 457 (945)
...++|..||+|+++||.|..|..|++|.+...+ .+ ....++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987311 00 1123578999999999
Q ss_pred EEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 458 ~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
.|+|+.+ +|++||.|+++|+|. .+..++..++||..+|+.+.|+| .|-++++++.|++-++|..+...+...+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 999999999999999 88899999999999999999987 568999999999999999999889999999
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
|-..|.|+.|+|+..++++++. |.++++||..+|..++.|.||.. +|.+++|+|+|.+|++|+.||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999986 99999999999999999999988 899999999999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++++..+..| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999887 458999999999999999999999999998654
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-29 Score=259.86 Aligned_cols=496 Identities=14% Similarity=0.139 Sum_probs=352.1
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
-..+|.++|||.+.+.||.+-.||.|.+|++..+=.... .+.++ ...|.+++|++.+ .|.|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 456899999999999999999999999999988644333 44444 5689999999655 588899999999999 9
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+++.+..+....+.|++++.+|.. ..++.|+.||.+..++...+..... +....+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998865 6899999999777777666555443 3344578999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEec----cc---cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 561 DGDSFLVEWNESEGTIKRTYA----GF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
||.|++||...+..+.... +. ....++++.+-.+ ..+++|...|.|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999987766221 11 2224667777644 5899999999999999999999999887754 899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC-----
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP----- 708 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~----- 708 (945)
+++.++++.++++++.|+.|..+...++... -........+...+.+++..++ .+++|..+....+.-...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~ 325 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMD 325 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchh
Confidence 9999999999999999999999988776431 1111222334445777777766 444443333332211111
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC-----CcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS-----GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
.+....+...........+.++.-..+..+.+|.+...... ..+..+.++ ....|.+.+.||+|++++.+.
T Consensus 326 h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k----~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 326 HRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK----EKENISCAAISPDGNLIAIST 401 (691)
T ss_pred hhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecC----CccceeeeccCCCCCEEEEee
Confidence 01111222233333344445555555677888887764322 122222333 456799999999999776654
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccC
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT 861 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~ 861 (945)
-...++|.+.... .+. +-.... .+. ..-....+.|+-|+..++.++ ...+.++++.+
T Consensus 402 -~~~~~iy~L~~~~-----~vk------~~~v~~-------~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ 460 (691)
T KOG2048|consen 402 -VSRTKIYRLQPDP-----NVK------VINVDD-------VPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELET 460 (691)
T ss_pred -ccceEEEEeccCc-----cee------EEEecc-------chh--hhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence 4467888765322 100 000000 111 233567788888888777776 46688888765
Q ss_pred ce--EEEEec--CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEec-CCcceeeeecCC
Q 002264 862 FK--VMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-TSLNILVSSGAD 936 (945)
Q Consensus 862 ~~--~~~~~~--~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~dg~~l~s~~~D 936 (945)
.. .+..+. +-...|..+..|| +|++||+.+.+|.|.+|++++++...-...-...|+.++|+ ++-..|+.+..|
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC
Confidence 43 222222 2456799999999 99999999999999999999886544443344789999999 466788889999
Q ss_pred ceEEEEec
Q 002264 937 AQVTLCVE 944 (945)
Q Consensus 937 g~i~vWdl 944 (945)
+.++-+|+
T Consensus 540 nQv~efdi 547 (691)
T KOG2048|consen 540 NQVFEFDI 547 (691)
T ss_pred CeEEEEec
Confidence 99988886
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=241.87 Aligned_cols=292 Identities=15% Similarity=0.247 Sum_probs=237.6
Q ss_pred ccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceee-ccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
+.+.+|.+.|..++|+|- |..||+|+.|..|++|+..++........+ .+|+..|.+++|+|.|+ +|+++|.|.++
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~ 85 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATV 85 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceE
Confidence 457899999999999998 999999999999999999865444333333 37999999999999999 99999999999
Q ss_pred EEEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC---eeEEecCCCCeEEEEEEcCCCC
Q 002264 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 478 ~vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
.||. ..+ +++..+.||...|.|++|+. +|.+|++++.|+.|-+|.+.... ....+..|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 9999 433 67899999999999999976 66899999999999999987543 3456788888999999999999
Q ss_pred EEEEEeecCCCCceEEEEeCC---CCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
.|++++. |++|++|+-. ...+.+++.+|.. .+.+++|++.|..|++++.|++++||...+. +. ..+
T Consensus 164 lL~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~ 232 (312)
T KOG0645|consen 164 LLFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMH 232 (312)
T ss_pred eeEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhc
Confidence 9999997 9999999866 3468899999988 8999999999999999999999999986522 21 123
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC-ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG-LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
...+..+.|. ...||+++.|+.|++|.-... ....-.+-.+....+...|+++++.|.+.
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~----------------- 293 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS----------------- 293 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC-----------------
Confidence 4478899998 458999999999999987643 11112222233344555799999998532
Q ss_pred CCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
+.+++++.||.+++|.+.
T Consensus 294 -------------------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 -------------------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred -------------------CceeecCCCceEEEEEec
Confidence 234789999999999864
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-32 Score=247.23 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=254.3
Q ss_pred ceEEeecCCCcEEEEEEeC---CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 336 TVAVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp---~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
.++..-+|+.+|-.++||| +| |+|++++.||.-.+=+-++|..+. .+.||.+.|.+.
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~ 65 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSA 65 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeee
Confidence 4455667999999999996 66 579999999999998888888773 489999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEe
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNF 490 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~ 490 (945)
..+.+...-|+++.|-+-++||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++||| ....+...+
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhh
Confidence 9999999999999999999999999988763 3 4888999999999999 899999999999999 445577889
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.+|.+.|..+.|.... +.+++.+.|++||+||.+++.....+.... +|+++.++++|++|.++. .+.|..||
T Consensus 140 ~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia~-----gssV~Fwd 211 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIAY-----GSSVKFWD 211 (334)
T ss_pred cCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEec-----CceeEEec
Confidence 9999999999997643 678888999999999999999988877654 599999999999988775 66899999
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
..+..+++.+.... .|.+.+++|+...+++|++|..++.||..+++.+..+ ..+|.++|.|+.|+|||..-++|+.|
T Consensus 212 aksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 212 AKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCC
Confidence 99999998887654 4888899999999999999999999999999998886 23456699999999999999999999
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
|+|++|....+
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999998665
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=263.64 Aligned_cols=293 Identities=13% Similarity=0.183 Sum_probs=246.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+++..|.+.|.-+.||++|+|||+++.|.+..+|.+.....++...++.+|..+|..+.||||.+ ++++|+.|..+++
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 55889999999999999999999999999999999987776777778999999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEE
Q 002264 480 WE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 480 wd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~ 556 (945)
|| .+|.....+. ++...+.+++|.| ||..+++|+.|+++..||++.... ....+ ....|.+++.++||+++++.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEE
Confidence 99 8888776664 3467899999987 668899999999999999875432 22222 23469999999999999988
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
+. |..|++++..+.........+. .+++.+++.+++++++.-.+..+++||+.....+..+.++....-+..-+
T Consensus 373 ~~----d~~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 373 TV----DKKIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ec----ccceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 85 8899999988766555444443 68999999999999999999999999999888888887776544555556
Q ss_pred EcC-CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcc
Q 002264 637 FSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (945)
Q Consensus 637 ~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (945)
|.- +..++++|++|+.|+||+..++ .++..+.||.. .+.+|+++|....+
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~-----~vNcVswNP~~p~m----------------------- 497 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK-----TVNCVSWNPADPEM----------------------- 497 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcc-----eeeEEecCCCCHHH-----------------------
Confidence 654 5689999999999999999998 78888988875 48899999986554
Q ss_pred cCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 716 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
+|+++.||+|++|....
T Consensus 498 -------------~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 -------------FASASDDGTIRIWGPSD 514 (519)
T ss_pred -------------hhccCCCCeEEEecCCc
Confidence 48999999999998763
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-32 Score=273.61 Aligned_cols=290 Identities=16% Similarity=0.218 Sum_probs=250.9
Q ss_pred ccccCCCccEEEEEEcC-CCCEEEEEECCCcEEEEEccC-CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..+.||...|+++.|.| .+.+|++|+.|+.|+||++-. +.+++ ++.+|..+|.+++|+++|. .|+|+|.|+.+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 46889999999999999 899999999999999999977 66666 8899999999999999999 89999999999
Q ss_pred EEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 478 ~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
++|| .+|+++..+. ....++|+.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999 9999999887 45678999999975 4799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC---eeEEEeecCCCCCCcc
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV---NILTSTDAEGGLPNLP 633 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~ 633 (945)
+. ++.+++|+.+.+..++...........++..+|+++++++-+.|+.|.+|.+... ...+.+.+|...+.-.
T Consensus 361 SD----dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 361 SD----DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred cc----CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 86 8899999999988877666555556778999999999999999999999986542 2334555555455667
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCC
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (945)
.+.|||||.+|++|+.||.+.+||.++- ..+..+..|. .++..+.|.|.....
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~-----~~ci~v~wHP~e~Sk--------------------- 489 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHD-----QPCIGVDWHPVEPSK--------------------- 489 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCC-----cceEEEEecCCCcce---------------------
Confidence 8999999999999999999999999887 6666666653 357788888875433
Q ss_pred cccCCCCCccCCCCCccccCCCCCCcccc
Q 002264 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (945)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (945)
+++++.+|.|++|+
T Consensus 490 ---------------vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 ---------------VATCGWDGLIKIWD 503 (503)
T ss_pred ---------------eEecccCceeEecC
Confidence 47889999999996
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=7.8e-30 Score=305.11 Aligned_cols=292 Identities=14% Similarity=0.180 Sum_probs=236.5
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~ 419 (945)
..|.+.|++++|+|+|+ ++|+|+.|++|+||+..+...... .. ......+. +...|.+++|++ ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceEEec-ccCceeeEEeccCCCC
Confidence 34899999999999999 599999999999999764211000 00 00001122 346899999988 578
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v 497 (945)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..+
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999886655 6778999999999997 667 899999999999999 778888888754 678
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--- 573 (945)
.++.|.+. ++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. |+.|++||+..
T Consensus 621 ~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 89998643 57899999999999999998765 455677888899999997 7788888885 89999999974
Q ss_pred ---CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee-----------cCCCCCCccEEEEcC
Q 002264 574 ---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSK 639 (945)
Q Consensus 574 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp 639 (945)
...+..+.+|.. .+..++|++++.+|++|+.||.|++|+......+..+. ...+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356778888876 78889999999999999999999999987665443321 122334689999999
Q ss_pred CCCEEEEEECCCcEEEEEC
Q 002264 640 EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~ 658 (945)
++..|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.4e-30 Score=285.08 Aligned_cols=256 Identities=22% Similarity=0.374 Sum_probs=225.8
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--C
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~ 482 (945)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|++|| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977662 22235689999999999999999 999999999999999 3
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+..++++.+|...|++++|+|. ++++++|+.|++|++||+++++....+..|...|++++|+++++.+++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 44788999999999999999885 489999999999999999999999999999999999999999999999975
Q ss_pred CceEEEEeCCCCc--eeeEeccccCc-ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC-CCccEEEEc
Q 002264 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (945)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s 638 (945)
|+.|++||+.++. +...+.++... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 56778877775 6899999999999999999999999999999998888877543 244555667
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 89999999999999999999876 44444433
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.9e-29 Score=265.20 Aligned_cols=247 Identities=23% Similarity=0.398 Sum_probs=218.3
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 366899999999999999999999999999999999876444 5678999999999999998 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
| ..++.+..+..|...+.++.|++. +.++++++.||.+.+||+.+.+....+..+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 666788888899999999999874 578888888999999999988888888878888999999999888888764
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
++.+++||+++++....+..+.. .+.++.|+|+++.+++++.+|.|++||+.+++.+..+..+. ..+.+++|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcC
Confidence 88999999999988888887765 78999999999999999999999999999988888775543 3899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++.++++++.||.|++|+..++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc
Confidence 9989998888999999998754
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.6e-29 Score=297.12 Aligned_cols=270 Identities=15% Similarity=0.205 Sum_probs=216.1
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC----ccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~----~~~ 441 (945)
+|.+++|+..+.+.... + ....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--~------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--L------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--e------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888765443211 0 11224569999999999999999999999999999997542 111
Q ss_pred c-cceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCe
Q 002264 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (945)
Q Consensus 442 ~-~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (945)
. ....+ .+...|.+++|++.... ++++++.||+|++|| .+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 34568999999986433 899999999999999 788889999999999999999864 4579999999999
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEc-CCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCC
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
|++||++++.....+..+ ..+.++.|+ +++..+++++. ++.|++||+++++ ....+.+|.. .+..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988877777654 468899995 57889998885 8999999998765 4667777776 78899997 67
Q ss_pred CEEEEEECCCcEEEEECCCC------eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+++++.|+.|++||+..+ .++..+..|. ..+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4566666554 47899999999999999999999999997654
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.1e-30 Score=231.60 Aligned_cols=274 Identities=17% Similarity=0.231 Sum_probs=233.0
Q ss_pred cccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 399 ~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
.+++..|.++|..+.|+-||+|.++++.|.+|++|+...|..++ ++.+|...|..++.+.|+. .|++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 35678899999999999999999999999999999999998887 8899999999999999998 799999999999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC--CeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+|| .+|+.+++|.+|.+.|+.+.|+. +...+++|+.|.++++||.++. ++++.+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999965 5589999999999999998764 4455666666678888765 557777
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++. ||+++.||++.|....-+.++ +|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....=..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 776 999999999999887776664 7999999999999999999999999999999999999988776555677
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
+++.....+++|++||.|.+||+.+... +..+..+... .+..+.+.|.-..++
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~~v----~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVSTV----IVTDLSCHPTMDDFI 286 (307)
T ss_pred eecccceeEEeccCCceEEEEEecccee-eeeeccCCce----eEEeeecccCcccee
Confidence 8888888999999999999999988733 3333222111 156677777654443
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.9e-31 Score=251.57 Aligned_cols=230 Identities=16% Similarity=0.291 Sum_probs=202.3
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
...|+|+.+ |...+++|..|.+|+|||..+-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|++|| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999998 56789999999999999999877776 788999999999995 44 899999999999999 999
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
+++.++.+|...|..+.|+. .++++++.|.++.+||+.....+ ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999852 58999999999999999876533 3566788889998885 458998874
Q ss_pred CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g 641 (945)
|.+|++|+..+++.++++.+|.. .+.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.| |.
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 99999999999999999999987 5665555 488999999999999999999999999988765 7999999 56
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 002264 642 NLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+++|+.||+|++||+.++
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 79999999999999999876
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.1e-29 Score=235.89 Aligned_cols=307 Identities=14% Similarity=0.229 Sum_probs=241.1
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccccc-cccccccc-ccCcccccccccCCCccEEEEEEc
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSK-PFKIWDMA-ACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
.+...|++++.|.+|||||. |+|+|+.|..|+|.|++.. +... ...+..-. ...+++ .+.+..|...|+++.|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildverm--laks~~~em~~~~~qa~hPv-IRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERM--LAKSKPKEMISGDTQARHPV-IRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhh--hhhcchhhhccCCcccCCce-EeehhhccCcccceeec
Confidence 45567999999999999999 7999999999999998621 1100 00000000 011121 24678899999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe---c
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---E 491 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~---~ 491 (945)
|....|++|+.|++|+++|+......+.++.+ ....+|.++.|.|.|. +++.|....++++|| .+-++...- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999765444433333 3567899999999999 899999999999999 666554332 4
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-C-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+|.+.|+++.+++ .+++.++++.||.|++||--+..++.++.. | +..|.+..|..+|+++++.|. |..+++|
T Consensus 259 qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLW 332 (430)
T ss_pred ccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeee
Confidence 6899999999876 568999999999999999877777765543 3 348999999999999999986 9999999
Q ss_pred eCCCCceeeEeccccCc----ceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 570 NESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
.+.+++.+..+.|.... .-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-+|.+.-+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence 99999999999875211 123355777777777765 467899999999887766654 556789999999999999
Q ss_pred EEEECCCcEEEEEC
Q 002264 645 AVTTADNGFKILAN 658 (945)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (945)
.+++.|..+|+|--
T Consensus 412 mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSDDFRARFWYR 425 (430)
T ss_pred eeecccceeeeeee
Confidence 99999999999964
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=255.64 Aligned_cols=292 Identities=17% Similarity=0.229 Sum_probs=251.0
Q ss_pred CCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE
Q 002264 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (945)
Q Consensus 332 ~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (945)
.+|......++ |.++|..+.|-++.. .|++|+.|..|.+|++..++... ...+.|..++|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it 223 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT 223 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence 45666667777 999999999999977 49999999999999998766321 145778889999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
++.|.++++++++++.|+.+++|+++...... ++.+|++.|+++.|..... .+++|+.|.+|++|| ....+..+
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecc
Confidence 99999999999999999999999999876555 7889999999999998777 699999999999999 77777665
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+. ....+..|+.. ...+++|-.|+.|++||++..........++ .|+++..++++..+++++. |..+.+.
T Consensus 299 ~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~vi 368 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVI 368 (459)
T ss_pred cc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeee
Confidence 54 33456666654 2568999999999999999999988888776 7999999999999999986 8899999
Q ss_pred eCCCCceeeEecccc---CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 570 NESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 570 d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
|+++.+....+.... ....+.+.|+|++.++++|+.||.|+||++.++++...+........|++++|+|.|..+++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999999888776432 12367799999999999999999999999999999999988766557999999999999999
Q ss_pred EECCCcEEEE
Q 002264 647 TTADNGFKIL 656 (945)
Q Consensus 647 ~~~dg~i~iw 656 (945)
++.++.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 9999999999
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=252.31 Aligned_cols=284 Identities=19% Similarity=0.280 Sum_probs=239.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..+.|++++|||...+=+|+.+ .-.+.||+..+..... .+......|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 3458999999997665455544 4678999987766542 1334567899999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~ 501 (945)
+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|+++. .|++|+.|+.+++|| .+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 67899999999999998887 899999999999999 55555558899999999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~ 580 (945)
|+|.. +.++++||.||.|++||++.......--.|+.+|.++.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 99874 47999999999999999998865555556888999999999999999997 6789999999654 44445
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
..|++ .|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+...
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehhhc
Confidence 55666 89999999999999999999999999999999999887754 899999999999999999999988764433
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-29 Score=243.74 Aligned_cols=289 Identities=19% Similarity=0.331 Sum_probs=241.5
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
|+.....+-|.+.|.++... ++ .+.+|+.||.++|||.. |+.. ..+.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~-------------------~~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSI-------------------KTIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceE-------------------EEEecCCcceeeeE
Confidence 45667778899999999998 45 48999999999999975 4443 33789999999888
Q ss_pred EcCCC---CEEEEEECCCcEEEEEccCCccc-ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC----
Q 002264 414 WSPDG---NYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---- 484 (945)
Q Consensus 414 ~s~~g---~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---- 484 (945)
|--.. ..+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|++|+ ...
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 85433 35999999999999999877643 22223459999999999999999 899999999999998 211
Q ss_pred ---------------------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEE
Q 002264 485 ---------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 485 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 543 (945)
.++..+.+|..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.... .+.+
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~ 305 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNC 305 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecCc-ceeE
Confidence 23567889999999999975 3589999999999999999998888776544 5899
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe-
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN- 618 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~- 618 (945)
+.++|..++|++++. +..+++||.+++. ..+.|.+|.+ -|..+.|+|.. .+|++|+.||++++||+++..
T Consensus 306 i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred eecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 999999999999987 8999999999763 4567889988 89999999975 567789999999999999877
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
++..+..|. ..|.++.|+. +..+++|+.|.+|+|+...
T Consensus 381 plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 381 PLYDIAGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cceeeccCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 888887664 4899999984 6789999999999998653
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.7e-29 Score=228.27 Aligned_cols=288 Identities=11% Similarity=0.118 Sum_probs=238.0
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
++.+.+|+.+++.+.|+.+|. ||.+++.|.++.||-..+|+.+- .+.||.+.|.|+..+-
T Consensus 3 pi~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~ 62 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDW 62 (327)
T ss_pred ccccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecC
Confidence 355667999999999999999 89999999999999988898874 3889999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-C-------C
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-L-------S 483 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~-------~ 483 (945)
+.+++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|+ +++.+. ..+.|.++| . .
T Consensus 63 ~s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 63 DSKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred CcceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence 999999999999999999999988763 3 2567899999999999 444433 346788998 4 3
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
..+...+..+.+.++.+-|.|. ++.|++|..||.|.+||++++.... ....|...|+.+.+++|..++++++.
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~---- 210 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK---- 210 (327)
T ss_pred cCceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----
Confidence 3557888888999999999885 4799999999999999999976554 45778889999999999999999986
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc--EEEEECCCC------------eeEEEeecCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IKFWDMDNV------------NILTSTDAEGG 628 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~------------~~~~~~~~~~~ 628 (945)
|.+-++||..+-+.++++.... ++++.+++|...+++.|+.... |.-=+.+.| +.+..+. +|
T Consensus 211 Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GH 286 (327)
T KOG0643|consen 211 DTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GH 286 (327)
T ss_pred CccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--cc
Confidence 8899999999999999998754 6999999998888888764322 211122222 2233333 55
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.++|++++|+|+|+..++|+.||.|++.....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 67999999999999999999999999986653
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4.5e-29 Score=274.66 Aligned_cols=306 Identities=19% Similarity=0.274 Sum_probs=249.6
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEe--CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
|++..|.+++.+|||.. +|||+ .||.++||+...--. ..+.++.. .+.+......|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 35668999999999995 99999 899999998653211 01111111 2223334678999999999999999
Q ss_pred EEEEEECCCcEEEEEccC----------C-----cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 420 YVGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
+||+|+.|+.|.||.... | +..+....+.+|.+.|.+++|+|++. +|+++|.|++|.+|| .+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999873 0 11234457889999999999999999 999999999999999 88
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------CCeEEEEEEcCCCCEEEEEe
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+.+..+.+|.+.|..+.|.| -|++|++-+.|++|++|++..-+....+..+ ...+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 899999999999999999977 5599999999999999997765555555443 23678899999999999987
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC-----CC------------EEEEEECCCcEEEEECCCCeeE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|++|.||.....+++
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 7666778899999988898899999998 8999999872 11 5677899999999999877776
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..-. ...|.+++|+|||..|++++.||+|.++..+..
T Consensus 318 ~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 318 FVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6554322 237999999999999999999999999998653
No 71
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-28 Score=249.64 Aligned_cols=215 Identities=17% Similarity=0.219 Sum_probs=159.8
Q ss_pred EEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 338 ~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
+..++ |++.|+.+.|||-...|||+||.|..|+||.+..|-... + ....-.+.+..-.|.|+.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~---L----------Sape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK---L----------SAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc---c----------CCcceeecCCceEEEEeeccc
Confidence 33444 999999999999877799999999999999997443211 0 001122444456789999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHE 494 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~ 494 (945)
..+-|...+..|+++|||+.+++.+. .+.+|...|.++.|+.||. +++++++|+.|+||| ..++.++...+|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 77666666678999999999987766 7889999999999999999 999999999999999 6788888888887
Q ss_pred CC-EEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCe-eEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 495 AP-VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS-RVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 495 ~~-v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
+. -..+.| -++-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.++|+.+|. |+..++
T Consensus 214 ~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~ 288 (1012)
T KOG1445|consen 214 GMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLF 288 (1012)
T ss_pred cchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEE
Confidence 64 223344 3344567776665 4689999876443 2233222 224555668899999988874 688898
Q ss_pred EEeCCCCc
Q 002264 568 EWNESEGT 575 (945)
Q Consensus 568 iwd~~~~~ 575 (945)
++.+...+
T Consensus 289 ~lE~~d~q 296 (1012)
T KOG1445|consen 289 MLEMQDRQ 296 (1012)
T ss_pred EEEecCCC
Confidence 88876544
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.2e-28 Score=223.46 Aligned_cols=233 Identities=14% Similarity=0.226 Sum_probs=202.8
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.+|++.|+|++...+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999988898777 8999999999999999999 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-----CCeEEEEEcc-------CCCeeEEecCCCCeEEEEEEc
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 547 (945)
| .+|+.+..++ ...+|..+.|++. |++++.... .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999998887 5678999999874 456655543 3678999987 345567777888899999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCcee-eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
|-++.|+++.. +|.|.+||+++|+.. .....|.. .|+.+.++++..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999985 999999999998554 44455555 8999999999999999999999999999999999988764
Q ss_pred CCCCCccEEEEcCCCCEEEEEEC
Q 002264 627 GGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
. +|++.+++|....++.|+.
T Consensus 232 ~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 R---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred c---cccceecccccceEEecCC
Confidence 3 8999999997777777654
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.2e-27 Score=210.43 Aligned_cols=311 Identities=18% Similarity=0.217 Sum_probs=239.8
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
...+.++..+..|.+++|+|.|. |.|+|+...+.+|-....-..+.... ...........+.-+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 34566777888999999999999 79999999999998654322211000 00000011112335678999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCC--cccccceeeccccccEEEEEEecC---CCeeEEEEEe-CCCcEEEEe-CCCceE
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRKL 487 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~---~~~~~l~s~s-~d~~i~vwd-~~~~~~ 487 (945)
||+|.+||+|+.|.+|++...+.. .....-..+.-|.+.|..++|..+ +.. +|++++ .|..|++-| ..|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999866532 223333367789999999999754 232 566655 466777778 899999
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-------CCCeEEEEEEcCCCCEEEEEeecC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+.+.+|.+.|.++- ++ ++..+++|+.|.+|++||++-...+..+.. ....|.+++..|.|+.|+++..
T Consensus 177 ~a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999998873 23 568999999999999999998777765532 2247899999999999999875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC--eeEEEeecCCCCCCccEEEEc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s 638 (945)
|....+||++.++.++.|..|.. .+.++.|+|...++++++.|..|++-|+... ..+..+....|...+..+.|+
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 88899999999999999999887 8999999999999999999999999998642 112222222344578899999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 002264 639 KEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~ 659 (945)
|..--+++.+.|.++.+|.+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 998889999999999999763
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.5e-28 Score=227.00 Aligned_cols=273 Identities=18% Similarity=0.286 Sum_probs=221.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.|.+++|||...++++.||-||+|++|+++...... .+....|.++|.+++|+.||..+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~ka~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------PKAQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------chhhhccCCCeEEEEEccCCceEEe
Confidence 45899999999766688899999999999998742221 1335679999999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+.+|+|||.|++|+.|| ....++.++. ....++++..
T Consensus 90 g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv 164 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV 164 (347)
T ss_pred eccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc
Confidence 999999999999998543 467899999999999877666899999999999999 7777777765 5667888765
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceee
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-AP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKR 578 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~ 578 (945)
-. .+++.+..++.|.+|+++.+...+... .+ .-.+++++..+|....+.++. +|.+.+..+..+ +.-.
T Consensus 165 ~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 165 LY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred cC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCce
Confidence 32 578899999999999997765544322 22 237889999998888888886 888888877766 4455
Q ss_pred EeccccC--------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 579 TYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 579 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
+|+.|.. ..|+.++|+|....|+++|.||++.+||-.....+...+.+. .+|++.+|+.+|.++|.+.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 6666663 236779999999999999999999999988877777665554 4999999999999988663
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=220.13 Aligned_cols=275 Identities=15% Similarity=0.216 Sum_probs=236.4
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~ 419 (945)
.+|.+.|.+++|+-+|.+ ||+|+.|+++.+|++...+.... ....+|.+.|..++|+| ...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCc
Confidence 358889999999999996 99999999999999988755432 34678999999999998 577
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+++++.|.+|++||+..+++.... . .++.=.-+.|+|+|+ +++.++.|..|...| .+.+.+.... ....+.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceee
Confidence 8999999999999999999877632 2 233345688999999 899999999999999 6655554443 556688
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
-++|+. ++.+++.....|+|.|.....-+.+..+..|.....|+.|+|+|+++++++. |..+-+||+..--+.+
T Consensus 152 e~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICER 225 (313)
T ss_pred eeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhe
Confidence 888874 3467777777899999999998999999999999999999999999999997 8999999999988888
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+..+.- +|..+.|+.+|++|+++++|..|-|=++.+|..+..++..+ +...|+|+|...+||.+++|
T Consensus 226 ~isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 8887765 89999999999999999999999999999999999887654 67999999999999988875
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=228.04 Aligned_cols=286 Identities=16% Similarity=0.269 Sum_probs=242.4
Q ss_pred eEEecCCCCeEEEEEEcC---CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC
Q 002264 531 RVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 607 (945)
.....+|..+|..++|+| +|-+|++++. |+.-.+-+-.+|..+.+|.+|.+ .++..+++.+-..-++++.|=
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 345567788999999985 8888998874 77777778889999999999988 888888888877888899999
Q ss_pred cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
+-++||.-+|..+..+.. .| -|.+++|+.|.++|++|+.+..+||||++........
T Consensus 82 takvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------------------- 138 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------------------- 138 (334)
T ss_pred hhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchh--------------------
Confidence 999999999999988864 34 7899999999999999999999999998754221111
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
+ .+|.+.|
T Consensus 139 ---------------------------------------------------------------------~---~ghtg~I 146 (334)
T KOG0278|consen 139 ---------------------------------------------------------------------I---SGHTGGI 146 (334)
T ss_pred ---------------------------------------------------------------------h---cCCCCcc
Confidence 1 1277888
Q ss_pred EEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE
Q 002264 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la 847 (945)
..+.|....+.+++.+.|++||+||.. +|..+.... ...+|+++.+++||++|.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~r----------------------Tgt~v~sL~----~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHR----------------------TGTEVQSLE----FNSPVTSLEVSQDGRILT 200 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEec----------------------cCcEEEEEe----cCCCCcceeeccCCCEEE
Confidence 999999989999999999999999753 333332211 467899999999999999
Q ss_pred ecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe-cCCCcceeEEEecCC
Q 002264 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTS 926 (945)
Q Consensus 848 ~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d 926 (945)
++..+.|.+||..+..+++.++. ...|.+..++| +..+++.|++|..++.||..+|+.+..+ ++|.++|.+|.|+||
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred EecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 99899999999999999988874 45689999999 7789999999999999999999998886 899999999999999
Q ss_pred cceeeeecCCceEEEEec
Q 002264 927 LNILVSSGADAQVTLCVE 944 (945)
Q Consensus 927 g~~l~s~~~Dg~i~vWdl 944 (945)
|...++||.||+|+||-.
T Consensus 279 GE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceeeccCCCceEEEEEe
Confidence 999999999999999963
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=262.56 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=250.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
.|.....++.....-+|...+.|..|. +| .+++|+.|++|++||..++..+. ..+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~------------------~~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLIL------------------TRLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEE------------------eeccCCC
Confidence 344433333333444578899999999 44 38999999999999999887763 2278999
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
+.|.++++..-+.+|++|+.|.++++||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999999888999999999999999999999888 78899999999988654 789999999999999 8899
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++....+.+|...|.++.+.+. ..+++++. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 469999999999999999999999999999999999988765 88999987 899
Q ss_pred EEEEeCCCC-ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 566 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
|++||+.+. +++.++.+|.. .+..+. ..++++++++.||.|++||..+++++..+... +...|..+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999877 454443 45789999999999999999999999999875 33467777775 4678
Q ss_pred EEEECCCcEEEEECCCC
Q 002264 645 AVTTADNGFKILANAIG 661 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~ 661 (945)
++++.||.+++||+.++
T Consensus 468 l~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEecCCeeEEEecccC
Confidence 89999999999999988
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=261.40 Aligned_cols=300 Identities=16% Similarity=0.206 Sum_probs=217.8
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC---CC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~---~g 418 (945)
.|.+.|+|+.||+||+| ||+|+.||.|+||.+...+....... +.. ..+. .+.+ .+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~---~~~---~~~~--~~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEG---DSS---CMYF--EYNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhccccc---ccc---hhhh--hhhh-ccccCccccccccccc
Confidence 59999999999999995 99999999999999876443210000 000 0000 0000 00011111111 11
Q ss_pred C--EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 419 ~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|+|+|.|++|++|+ ....++..|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222221111111123444788999999999999876 799999999999999 7888888887 999
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|+|++|+|..| +++++|+-||.||||++...+...-...+ .-|++++|.|||++.++|+. +|.+++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999855 89999999999999999876655544444 67999999999999999998 9999999998877
Q ss_pred eeeEeccc-------cCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 576 IKRTYAGF-------RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 576 ~~~~~~~~-------~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
+...+.-+ ....|+.+.|.|.. ..+++.+.|..|+|||.++..++..+.+......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 66554321 11258889888754 46889999999999999999999888876655555778999999999999
Q ss_pred ECCCcEEEEECCCC
Q 002264 648 TADNGFKILANAIG 661 (945)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (945)
++|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998543
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=6.2e-28 Score=242.50 Aligned_cols=301 Identities=19% Similarity=0.272 Sum_probs=231.5
Q ss_pred CcceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 334 PRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 334 ~~~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
|......+ +|+..|.++++.|.|.+ +++||.|.+|++||+.....-. ..|+ .+.......|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~-~~fr-------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASM-RSFR-------------QLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccc-hhhh-------------ccCccccccccee
Confidence 34444444 47889999999999997 9999999999999997654322 1122 2233445689999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcc---------cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
+||+.|..|++.+.....+|+|-++-+. ++.+..-+||...++|.+|.|+.+. .|+|++.||++++|| .
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 9999999999988888999999765332 3333456799999999999999887 899999999999999 3
Q ss_pred CC-ceEEEec-----CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCC--eEEEEEEcCCCC
Q 002264 483 SG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGH--WCTTMLYSADGS 551 (945)
Q Consensus 483 ~~-~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~s~~~~ 551 (945)
.. +.+..++ +..-++++++|++ +|.+|++|+.||.|.+|+....... ..-..|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 32 2333332 3345788888876 6789999999999999997543322 22234443 899999999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCc-eeeEeccccC-cceEEEEEcCCCCEEEEEE------CCCcEEEEECCCCeeEEEe
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 623 (945)
+|++-+. |+.+++||++..+ ++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+.+.+..+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9999886 9999999999754 4444443322 2345689999999999986 4578999999999999988
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
..... .|..+.|+|.-+.|.+|+.||+++++=-
T Consensus 454 ~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 454 DISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cCCCc--eEEEEeecchhhheeeecCCCceEEEEC
Confidence 87643 7899999999889999999999998743
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=8.5e-27 Score=255.94 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=222.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~l 421 (945)
|-..|....+++++.. +++++.+..+..|+...+..+.. .............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788888774 67777788888898765543210 0001111111234789999999999999 89999
Q ss_pred EEEECCCcEEEEEccCCcc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 422 GVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1233467899999999999998643 899999999999999 888888999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
|.+++|++ +|.+|++++.|++|++||++++.....+..|.+ ....+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999987 568999999999999999999888888777765 345778999998998887655568899999998754
Q ss_pred -eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 576 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+......+....+....|+++++.+++++ .||.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 33333333333466678999999999988 5999999999999887766543 3346788999885
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-28 Score=221.46 Aligned_cols=283 Identities=18% Similarity=0.241 Sum_probs=225.1
Q ss_pred EEEEEeCC--CCeEEEEE-----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CC
Q 002264 348 ISMDFHPS--HQTLLLVG-----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (945)
Q Consensus 348 ~~v~fsp~--g~~llasg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~ 419 (945)
.++.|||- ++..+|++ ...|++.|-++..++-+.. +. --.-.+.+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57888884 33222332 1257899999864443321 11 1123568999999995 56
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+++++.||++++||... .-.++..++.|...|.++.|++-.+. .++++|.|++|++|+ ..++.+.++.+|...|+
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 33444578899999999999997766 788889999999999 88889999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCE-EEEEeecCCCCceEEEEeCCCC-ce
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEG-TI 576 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~~-~~ 576 (945)
...|+|. ..+.+++++.|+++++||++.......+..|...|.++.|+.-... +++++ .|+.|+.||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 9999997 4589999999999999999998888889999999999999985555 45555 3999999999875 46
Q ss_pred eeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcE
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i 653 (945)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 777777765 89999999965 67888999999999998854 344555544 34788999998 78899999999999
Q ss_pred EEEEC
Q 002264 654 KILAN 658 (945)
Q Consensus 654 ~iw~~ 658 (945)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99985
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.7e-28 Score=231.98 Aligned_cols=260 Identities=15% Similarity=0.240 Sum_probs=220.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccc-----eeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~-----~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+....+.|..|||||+||++|+.||.|.+||..+|+..+.. ..+.-+..+|.|+.|+.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 45677899999999999999999999999999998754322 13445788999999999999 899999999999
Q ss_pred EEe-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 479 VWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 479 vwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
+|. .+|.+++.|. .|...|+|+.|+. |+..+++++.|.++++.-+.+++....+.+|...|+...|++||..++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999 9999999997 8999999999976 55789999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeEEEeecC-CCCCCcc
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLP 633 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~ 633 (945)
+. |++|++|+.++.+++.+|.... +..+..+-.-| +...++++...++|++.++ .|+.++.+... ...+...
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceE
Confidence 97 9999999999999998887543 33466665555 4578999999999999998 46667766432 2334567
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcc
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPF 673 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (945)
+.+.+|.|.++.+.+.|+.++.|...+| .+.+++.-|..
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEk 480 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEK 480 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccc
Confidence 8889999999999999999999999988 55555555444
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.1e-27 Score=229.27 Aligned_cols=283 Identities=19% Similarity=0.319 Sum_probs=235.5
Q ss_pred cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccC
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 527 (945)
-|...|.++... ++ .++||+.||.+++||..|+....+.+|.++|.+++|.-.+. ...+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488899999887 45 89999999999999999999999999999999888765432 24699999999999998877
Q ss_pred CCeeE----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-------------------------CCceee
Q 002264 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (945)
Q Consensus 528 ~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-------------------------~~~~~~ 578 (945)
+.... .-.+|...|.++...++|.++++++. |.+|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65443 23478889999999999999999998 9999999922 123566
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++.+|.. .|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++.++|..++|++|+.|..|++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7788887 899999988 6789999999999999999999988886643 6899999999999999999999999999
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
+++.. +
T Consensus 330 R~~~g--------------------------s------------------------------------------------ 335 (423)
T KOG0313|consen 330 RTGDG--------------------------S------------------------------------------------ 335 (423)
T ss_pred CCCCC--------------------------c------------------------------------------------
Confidence 76510 0
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCc
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (945)
+...
T Consensus 336 ----------------------------~v~~------------------------------------------------ 339 (423)
T KOG0313|consen 336 ----------------------------VVSQ------------------------------------------------ 339 (423)
T ss_pred ----------------------------eeEE------------------------------------------------
Confidence 0000
Q ss_pred ccccccccCCCcCCceeEEeecCCCc-eEEecC-CCeEEEEeccCce-EEEEecCCCCCeeEEEeecCCCceEEEeecCc
Q 002264 819 LLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (945)
Q Consensus 819 ~~~~~~l~~~~~~~~i~~l~~s~dg~-~la~~s-d~~i~iwd~~~~~-~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg 895 (945)
.+.+ |...|.++.|+|... .|++|+ |+++++||+++.+ ++..+.+|...|.++.|.. +..|++|+.|+
T Consensus 340 -----s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~ 410 (423)
T KOG0313|consen 340 -----SLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADN 410 (423)
T ss_pred -----eeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcc
Confidence 0222 778888888888554 567777 9999999999877 8999999999999999985 66999999999
Q ss_pred eEEEEecc
Q 002264 896 TIHIYNVR 903 (945)
Q Consensus 896 ~v~vwd~~ 903 (945)
+|+|+.-.
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998743
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-27 Score=248.83 Aligned_cols=278 Identities=15% Similarity=0.233 Sum_probs=235.9
Q ss_pred EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC
Q 002264 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~ 426 (945)
..-+.||..+ +||+|. ...|++|+..+++... +..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~-------------------l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTE-------------------LCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEE-------------------eEecCCCceEEEEECCCCCEEEEeec
Confidence 4457788554 588875 5689999999887542 12234789999999999999999999
Q ss_pred CCcEEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE-EecCCCCCEEEEEee
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPH 503 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~-~~~~~~~~v~~~~~~ 503 (945)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+| ...+... .+.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999998877766 5666 99999999998 44 789999999999999 5554443 488999999999997
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC-CCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
+ ++.++++|+.|+.+.|||.........+..|...|..++|+|- ...|++++. ..|+.|++||..++..+.....
T Consensus 311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 7 6689999999999999999888999999999999999999994 456666653 4689999999999999888765
Q ss_pred ccCcceEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 583 FRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.. .|+.+.|++..+.|+++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 43 69999999998777774 3678999999999998888887755 899999999999999999999999999865
Q ss_pred C
Q 002264 661 G 661 (945)
Q Consensus 661 ~ 661 (945)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-26 Score=217.57 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=231.0
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..+.|+++.|+++|.. |++++.|.+++|||..+++++.. +..+...|..+.|-.....++
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 4679999999999995 77788899999999999987743 555677888999988877777
Q ss_pred EEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEE
Q 002264 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 423 s~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~ 499 (945)
.++. |.+|+..++.+.+.++ .+.||...|.+++.+|-+. .|+|++.|++|++|| ...++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998887 7889999999999999998 899999999999999 6566666655444444
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCC---CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
++|.| .|-+++++.....|++||++... +...+... ....+.+.|||||++++.++. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45545 66788888877799999998752 22333333 457899999999999998875 888999999999
Q ss_pred ceeeEeccccCcc--eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
..+.++.++.... ....+|+|+++++++|+.||+|.+|+++++..+..+.+. +..++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999988776532 245789999999999999999999999999999999875 345899999999877777664 56
Q ss_pred EEEEECC
Q 002264 653 FKILANA 659 (945)
Q Consensus 653 i~iw~~~ 659 (945)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888664
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=224.34 Aligned_cols=253 Identities=18% Similarity=0.257 Sum_probs=200.1
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC------------Cc---ccccceeeccccccEEEEEEecCCCe
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SN---DLRQHSQIDAHVGAVNDLAFAYPNKL 465 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~------------~~---~~~~~~~~~~h~~~v~~l~~s~~~~~ 465 (945)
.+..|..++.+.+|||||.++|+|+.|..|+|.|++. |. .-..+.++..|..+|+++.|.|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999861 11 1112346778999999999999999
Q ss_pred eEEEEEeCCCcEEEEe-CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCC
Q 002264 466 LCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGH 539 (945)
Q Consensus 466 ~~l~s~s~d~~i~vwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~ 539 (945)
+|++|+.|++|++|| ...... .+......+|.++.|+|+ |.+|+.|....++++||+++.++...-. .|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999 332222 222234568999999995 4799999999999999999988776543 3556
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
.|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|++..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999985 99999999999999988864 455568999999999999999999999999999999
Q ss_pred eEEEeecCCCCCC---ccEEEEcCCCCEEEEEEC-CCcEEEEECCCC
Q 002264 619 ILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTA-DNGFKILANAIG 661 (945)
Q Consensus 619 ~~~~~~~~~~~~~---v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~ 661 (945)
++..+.+-+..+. -+...|+....+++.-.+ .+.+.-||.+++
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998876532211 233455555555554433 345666666554
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.5e-27 Score=215.64 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=234.2
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.+.+|...|.+++|+.+|..||+|+.|+++.+|+++...... -....+|.+.|..++|.|.... .|++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 4477899999999999999999999999999999998874433 2357799999999999998776 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| ..+++........+.+. ++|+| +|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~- 166 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN- 166 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec-
Confidence 99 99999988876655554 45655 668999999999999999987666554333 23577888987777766554
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|.|.|.|.....-+++..+..|.. ...|+.|+|+|++|++|+.|-.+.+||++..-+++.+....- +|..+.|+
T Consensus 167 ---GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 ---GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred ---CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 489999999999999999999986 677899999999999999999999999999888888876554 89999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
.||++||++++|..|-|=++++|.++-+.. ..++...|+|+|...+||.+.....
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~-------~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP-------CEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee-------ccCCceeEEecCCCceeeEEecCCC
Confidence 999999999999999999999995443322 2356788999999999887665443
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=230.63 Aligned_cols=294 Identities=16% Similarity=0.222 Sum_probs=233.1
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccc----cccCcccccccccCCCccEEEEEEcC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
-.|.-+|+||+++|++++ .++++.+|+|.=|++.+|+.... +|.- +....+.+... .+|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 348889999999999996 99999999999999999875411 1110 00112222222 48999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... .+++++.|++|++|+ .....+.++.+|.+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999998777 6889999999999987666 789999999999999 77778889999999
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|.+|.... -++.+-+|+.|+++++|++ ..+....+.++.+.+-|++|-.+ ..+++++. +|.|.+|++...+
T Consensus 288 ~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKK 359 (479)
T ss_pred ceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccC
Confidence 999998654 3356666779999999999 34555567777888999999655 46777775 9999999999988
Q ss_pred eeeEeccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eeEEEeecCCCCCCccEEEEcCC
Q 002264 576 IKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 576 ~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
++.+....+. ..+++++..|..+++++|+.+|.|++|-+..+ .++..+.. .+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccC
Confidence 8876653221 14778999999999999999999999999887 34555543 347999999999
Q ss_pred CCEEEEE-ECCCcEEEE
Q 002264 641 GNLLAVT-TADNGFKIL 656 (945)
Q Consensus 641 g~~l~~~-~~dg~i~iw 656 (945)
|+.+++| +....+-=|
T Consensus 437 gk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CCEEEEeccccccccee
Confidence 9966665 333344334
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=244.24 Aligned_cols=352 Identities=20% Similarity=0.278 Sum_probs=263.5
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
++..++.+.+.|+||+.||.|++|++.......+.++ ...++.|...|+.++...+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-------------~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-------------IASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccch-------------hhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 4555544443599999999999999876543221111 123677999999999999999999999999
Q ss_pred cEEEEEccCCcccccceeeccccccEEEEEE-ecCCCeeEEEEEeCCCcEEEEe-CCC--ceEE--------Eec-CCCC
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKLF--------NFE-GHEA 495 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~~~~~~~l~s~s~d~~i~vwd-~~~--~~~~--------~~~-~~~~ 495 (945)
+|++|+...+. ...+.++..|...|.|+++ .++.. .+||||-|+.|.+|| ..+ +.+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998774 2233378889999999999 66666 899999999999999 655 2222 233 7888
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|++++-++ .|..+++|+.++.+++||.++...+..+.+|...|..+..++||+.++++++ |++|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999765 5589999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~i 655 (945)
++.++..|.. .++++..+|+-.++++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999988 699999999999999999999999999998543333333333 7888888865555577888999999
Q ss_pred EECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCC----CCccCCCCCccc
Q 002264 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD----PTSRSMDKPRTV 731 (945)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 731 (945)
|...-.. ++++.|................. -.+..++.|+. ....-+.+.+++
T Consensus 324 W~~~~~~---------------------~l~~s~~~~~~~T~~~~~~~~~~--~tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 324 WKLEPDI---------------------ALSVSGDLDFFSTDSNNHSCDLT--NTPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred cCCcccc---------------------ccccCCCCCcccccCCCcccccc--CCCceeccCchhhhhhhhhcCcceEee
Confidence 9775331 11111111111000000000000 01122222222 234457778899
Q ss_pred cCCCCCCcccccceeec
Q 002264 732 DDVTDKPKPWQLAEIVD 748 (945)
Q Consensus 732 ~~~d~~i~vw~~~~~~~ 748 (945)
-...|.+.+||+-....
T Consensus 381 kDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 381 KDAKGNVALWDILACVK 397 (735)
T ss_pred ecCCCCEEEEEeeeeee
Confidence 99999999999876443
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-25 Score=211.44 Aligned_cols=275 Identities=14% Similarity=0.209 Sum_probs=225.1
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC--CCcEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIK 478 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~ 478 (945)
.+..-.+.|.++.|+++|.+|++++.|.++++||..+|+.++ ++..+.-.|..++|..... .++.++. |.+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceE
Confidence 355567899999999999999999999999999999998877 6666778899999998887 4555554 88999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.-+ .+++.++-|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....+ .++|.|+|-.++++.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 999 8999999999999999999999865 68999999999999999988887777666554 468999999998886
Q ss_pred ecCCCCceEEEEeCCCC--ceeeEeccc--cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc-
Q 002264 558 TSKDGDSFLVEWNESEG--TIKRTYAGF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL- 632 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v- 632 (945)
. ...|++||++.. .+..++.-. .....+.+.|+|+|+.++.++..+.+++.|.-+|..+..+..+.....+
T Consensus 160 ~----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 160 G----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred C----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 3 459999999864 344444322 2335788999999999999999999999999999999988876544322
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
...+|+||++++++|+.||+|.+|+++++.+ +..+.+. ..+++.++.|+|.-..++
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-v~~~~~~----~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKK-VAVLRGP----NGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcE-eeEecCC----CCCCccccccCCceeeee
Confidence 4788999999999999999999999999943 4444442 334677777888766554
No 91
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=229.79 Aligned_cols=241 Identities=17% Similarity=0.269 Sum_probs=200.5
Q ss_pred ccCCCccEEEEEEcCCC-CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+.||.+.|.|++=+|.. ..+|+|+.||.|++||+...++.. ++.+|.+.|..+++.. . .++++|.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 57899999999999987 889999999999999999987777 7889999999999987 3 68999999999999
Q ss_pred eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
...+.+++++.+ .+.+..+.-+.. +..++++|. .|.|||.....++..+......|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg-~s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILG-KSVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeec-cccccccccccc--cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 977777777764 345666665443 356777765 5889999998999999888889999999998776665543
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe-eEEEeecCCCCCCccEEEEcC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp 639 (945)
.|+.|.+||++++.+++.+.... ..+.++|+|.+-.|++|++|..++.||++..+ ++.....| .+.|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCC
Confidence 38999999999999888765432 35679999988888889999999999998743 45555544 45899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.7e-26 Score=223.98 Aligned_cols=283 Identities=17% Similarity=0.202 Sum_probs=244.7
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|+++...|... .+.+|+.|..+.++|..+++.+ .+++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l-------------------~~~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQIL-------------------ATLKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhh-------------------hhccCcceEEEEEEeccchhheeec
Confidence 3788888888855 5899999999999999988876 3489999999999999999999999
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC--CCCCEEEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~--~~~~v~~~~ 501 (945)
+.|..|+||......+.. ....|.++|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999988766544 5668999999999999999 999999999999999 88888766553 234589999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
|+| ||.++.+|..||.|++||+........+.+|.++|..++|+.+|.+|++++. |+.|++||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 998 6789999999999999999999999999999999999999999999999985 7889999999988888888
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
......+..+.|.+.|.+++.++.|=.|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766789999999999999999887888887655544333333444457899999999999999999998888754
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-26 Score=240.31 Aligned_cols=259 Identities=18% Similarity=0.311 Sum_probs=222.7
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccC-C
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-V 405 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 405 (945)
+|+....+-..+..++ ...|+++.|+++|.+ ||+|..+|.|.|||..+.+.+.. +.+ |
T Consensus 201 lW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h 259 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFG-EELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSH 259 (484)
T ss_pred EEecCCCceEEeEecC-CCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCc
Confidence 7776664433333333 899999999999995 99999999999999988766532 455 9
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.||| ...
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCc
Confidence 9999999998 77899999999999999998776553 4789999999999999999 899999999999999 788
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEE--cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.++..+..|...|..++|+|... .+||+|+ .|+.|++||..++..+.... .+..|.++.|++..+.|+++.. ..
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~s 409 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--YS 409 (484)
T ss_pred cccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--CC
Confidence 88999999999999999999865 5788875 69999999999877766554 4557999999999988887653 34
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
++.|.+|+..+.+.+..+.+|.. .|..++++|+|..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67899999999999999999998 7999999999999999999999999998764
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.2e-27 Score=242.73 Aligned_cols=241 Identities=17% Similarity=0.238 Sum_probs=206.4
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEEccCCccc---ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-
Q 002264 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (945)
Q Consensus 411 ~i~~s-~~g~~las~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~- 484 (945)
.+..+ |+++||.+||.||.|++|++...... .....++.|...|.+++...+++ .|+|+|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 36788999999999999998654321 12346788999999999999999 799999999999999 554
Q ss_pred -ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe--eE--------Eec-CCCCeEEEEEEcCCCCE
Q 002264 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RV--------DYD-APGHWCTTMLYSADGSR 552 (945)
Q Consensus 485 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~~~~~ 552 (945)
-++.++..|.+.|.|+++.. .+...+++||-|+.|.+||++++.. .. .+. ++...|.+++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 57788999999999999843 3558999999999999999997633 11 122 55668999999999988
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+++++. ++.+++||.++++.+..+.+|.. .|.++..+++|..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888886 88899999999999999999998 899999999999999999999999999999999999988765 69
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998888764
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=231.67 Aligned_cols=275 Identities=20% Similarity=0.274 Sum_probs=228.8
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+-.++|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 366799999999999999999999999999999998765 334447888899999999999999 78899999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
+ .+.+...++.+|.+.|+++.|.-.. ..+++|+.|.+|++||+....+..++ .....+..+..+ ...++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccc-cccccccceEec--ceeeeeccc-
Confidence 9 8888999999999999999986543 34999999999999999886655543 233445556555 445666665
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC--CCCCccEEEE
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--GLPNLPRLRF 637 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~~ 637 (945)
|+.|++||.++..+......+. .++++..++++..+.+++.|.++.+.|+++.+....+...+ .....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999999888765 69999999999999999999999999999999888876543 2235789999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
||++.|+++|+.||.|+||++.++ .+.+.+...... ..|.+++|+|.|..++
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~---~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSN---AAITSLSWNPSGSGLL 447 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCC---cceEEEEEcCCCchhh
Confidence 999999999999999999999988 455555443321 2589999999888774
No 96
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=244.57 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=208.6
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccc----------ccceeeccccccEEEEEEec-CCCeeEEEEEeC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~ 473 (945)
|-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3455666677777777777777777777765443221 11224779999999999999 777 8999999
Q ss_pred CCcEEEEe-CCC-------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 474 d~~i~vwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567889999999999999863 36899999999999999999888888888888999999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe-eE
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (945)
|+|+|..|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999985 999999999999999988888764555678888888888765 47899999998754 33
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeeccc
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~ 688 (945)
.....+. ...+....|+++++++++++ .|+.|++||+.++. ........ ...++..++|.|.
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~~----s~~~~~g~~~~pk 314 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-LTFCSSYS----SVEPHKGLCMMPK 314 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-eEEEeecc----CCCCCcceEeccc
Confidence 3333322 23456678999999999888 49999999998773 32222111 2234556666664
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.4e-27 Score=228.31 Aligned_cols=284 Identities=14% Similarity=0.188 Sum_probs=232.2
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
+-+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++.. .+..|.+.|..|++.. .
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~ 120 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--T 120 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--c
Confidence 357999999999999984469999999999999998877663 3788999999999987 7
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+++++.|.+|+.|.++.. .++ ++. ..+.+..+.-+..+. .++|||. .|.||| ....++..+.-....|.
T Consensus 121 ~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred ceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCcee
Confidence 7889999999999998763 333 332 344566777766666 7899875 588999 78889999988888999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC-cee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIK 577 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~ 577 (945)
++.|+|... .+|++++.|+.|.+||++...+........ .-+.++|+|.+-.++++. .|..++.||++.- .++
T Consensus 192 svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 192 SVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM-RTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPL 265 (433)
T ss_pred EEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec-cccceecCccccceeecc----ccccceehhhhhhcccc
Confidence 999999754 688888899999999999988776554332 356899999666666665 4899999999864 466
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..+.+|.. .+..+.|+|.|.-|++|+.|.+|+||..+.+.....+... ....|.++.||.|.+++++|++|+.|++|.
T Consensus 266 ~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 266 NVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeee
Confidence 77777776 7899999999999999999999999999887654444332 234689999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
....
T Consensus 344 a~As 347 (433)
T KOG0268|consen 344 AKAS 347 (433)
T ss_pred cchh
Confidence 8654
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.3e-26 Score=227.04 Aligned_cols=283 Identities=20% Similarity=0.238 Sum_probs=235.4
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccc--------------eee-ccccccEEEEEEecCCCee
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~~~~~~ 466 (945)
+..|.-+|.+++++|++++.++++.+|+|.-|++.+|+..+.+ ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5669999999999999999999999999999999888743111 011 27889999999999999
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|.... ..+++++.|++|++|+++....+.++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999 9999999999999999999997543 5799999999999999998888888889999999998
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
...-++.+-+++. |.++++|++.. +....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888887777765 99999999943 33445666655 788888865 46899999999999999999888876643
Q ss_pred CCC----------CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 626 ~~~----------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
..+ ...|++++..|...++|+|+.+|.|++|.+.++.+.+..+...+ ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 221 12688999999999999999999999999999865555544433 34569999999999988776
Q ss_pred CCC
Q 002264 696 GTP 698 (945)
Q Consensus 696 ~~~ 698 (945)
.+.
T Consensus 444 iGk 446 (479)
T KOG0299|consen 444 IGK 446 (479)
T ss_pred ccc
Confidence 553
No 99
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.2e-25 Score=241.63 Aligned_cols=255 Identities=11% Similarity=0.118 Sum_probs=194.3
Q ss_pred EeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcc-
Q 002264 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (945)
Q Consensus 363 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~- 440 (945)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 556778888886543322 347899999999999996 79999999999999999986432
Q ss_pred c----ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 441 ~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
. .....+.+|...|.+++|+|++.. ++++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122356789999999999999874 568999999999999 7777777765 567899999987 568999999
Q ss_pred cCCeEEEEEccCCCeeEEecCCCCeEE-----EEEEcCCCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCc-ce
Q 002264 516 IDGKIKAWLYDTMGSRVDYDAPGHWCT-----TMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKK-SN 588 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~-~~ 588 (945)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..++.|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999988888888876433 2345689999999887544456899999995 5566555433321 22
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC
Q 002264 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g 641 (945)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334557888899999999999998774 3334433445678899999964
No 100
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-26 Score=209.06 Aligned_cols=249 Identities=15% Similarity=0.279 Sum_probs=204.9
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....+.-.+.+..++||+.....+++++.||+++|||+..... ++ ..++.|...|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi--------------~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PI--------------HKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----ch--------------hHHHhhhhheEEecccc
Confidence 3445567789999999999887899999999999999543221 11 44788999999999999
Q ss_pred -CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCC
Q 002264 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGH 493 (945)
Q Consensus 417 -~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~ 493 (945)
+++.+++++-|++|++|+..-+..+. ++.+|...|...+|+|.... +|+++|.|+++++|| ..|+.+. +..|
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ah 189 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEAH 189 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEec
Confidence 56678888999999999988776666 78999999999999998766 899999999999999 5566655 8889
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~ 571 (945)
...+.++.|+.. +...+++|+.|+.|++||++.-. ++..+.+|+-.|..+.|||... .|++++. |-++++||.
T Consensus 190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~ 264 (311)
T KOG0277|consen 190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDP 264 (311)
T ss_pred cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEeccc
Confidence 999999999865 45899999999999999998754 4567788888999999999654 5667775 889999998
Q ss_pred CCCc-eeeEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEEC
Q 002264 572 SEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 572 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (945)
..+. .+.+...|.. -+..+.|++ ++.++++++-|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 8554 4445554444 677888887 4678999999999999984
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-25 Score=233.76 Aligned_cols=280 Identities=16% Similarity=0.305 Sum_probs=235.8
Q ss_pred EEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE-EEEc
Q 002264 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWS 415 (945)
Q Consensus 338 ~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-i~~s 415 (945)
.+.+ +|...|..+++.+.. .+++||.||++++|+-..++.+. .+.+.+|.+.|.+ +++-
T Consensus 7 s~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~-----------------~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLE-----------------THAFEGPKGFIANSICYA 67 (745)
T ss_pred EEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccc-----------------ceecccCcceeeccceec
Confidence 3444 499999999988876 48999999999999976655442 2447778888888 8888
Q ss_pred C-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC
Q 002264 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 494 (945)
+ ++-.|++|+.|++|.+|...+...+. .+.+|...|+++....++. ++|||.|.++++|- .+++...+.+|.
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH~ 140 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGHT 140 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCcc
Confidence 6 55569999999999999999887776 7889999999999877764 89999999999997 345566699999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
..|+.++..|. ..+++|+.|.+|++|. .++...++.+|...|+.+++-+++. +++|+. ||.|++|++ +|
T Consensus 141 asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~g 209 (745)
T KOG0301|consen 141 ASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-DG 209 (745)
T ss_pred hheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-cC
Confidence 99999988764 2799999999999994 4777888999999999999988765 556663 999999999 88
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+.+..+.+|.. .+.++....++..++++|+|++++||+.. ++.+.+..++. .|+++.+-++|. +++|++||.||
T Consensus 210 e~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~Vr 283 (745)
T KOG0301|consen 210 EVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVR 283 (745)
T ss_pred ceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceEE
Confidence 99999999988 78889988888999999999999999976 77888877654 789999988886 56788899999
Q ss_pred EEECCC
Q 002264 655 ILANAI 660 (945)
Q Consensus 655 iw~~~~ 660 (945)
||....
T Consensus 284 VfT~~k 289 (745)
T KOG0301|consen 284 VFTVDK 289 (745)
T ss_pred EEEecc
Confidence 998864
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.7e-25 Score=206.70 Aligned_cols=304 Identities=13% Similarity=0.198 Sum_probs=219.9
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE----EecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
..+++|.+.|++++|+. ||+.|++++.|++|++|+++...... ....+.+..+.+.|+||.+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 46789999999999965 78999999999999999987643221 22223335688999999998877664 36
Q ss_pred ceEEEEeCCC---CceeeE--------eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 564 SFLVEWNESE---GTIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 564 ~~i~iwd~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
..+++|.+.. |..... |...+.-.+-.+-....+.+|++++.|..|.+|++. |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 6788887643 221111 111112123345566678899999999999999998 888888876543 55
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (945)
+..+.||+|+++++++..-.|++|.+- |..||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~-------------------------f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPI-------------------------FTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEE-------------------------eccCcchh--------------------
Confidence 788999999999999998889999762 22333211
Q ss_pred CcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEe
Q 002264 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (945)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~ 792 (945)
...+++. +.+ |.+.|..++|+++..++++++.||++++||
T Consensus 267 -----------------------ev~rvf~--------------LkG---H~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRVFS--------------LKG---HQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhhhe--------------ecc---chhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 1122333 333 999999999999999999999999999999
Q ss_pred ecCC-CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEec-C
Q 002264 793 WHRN-EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (945)
Q Consensus 793 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~-~ 870 (945)
.+.. ....+.+.+ ..|. ..+.. ..+....+++||.|+.||.+....+++|..++++...+++ .
T Consensus 307 tdVrY~~~qDpk~L----------k~g~---~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPKIL----------KEGS---APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCchHh----------hcCC---cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 6531 001111111 1111 01111 2334448999999999999988899999999998887776 4
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
|.+.|++++|++ +|+++|+++ |+.+++..
T Consensus 372 h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 889999999999 999999887 77788876
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=223.76 Aligned_cols=301 Identities=16% Similarity=0.240 Sum_probs=232.6
Q ss_pred EEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCCCCEEEEEECCC
Q 002264 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (945)
Q Consensus 532 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 607 (945)
..+..+...|.++++.|.|.++++++. |..|++||..... ..+.+.......+.++.|++.|..|++.+...
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 345566668999999999999999997 8899999987432 22333333444789999999999999999999
Q ss_pred cEEEEECCCCeeEEEeec----------CCCCCCccEEEEcCC-CCEEEEEECCCcEEEEECCCCccccccccCCccccc
Q 002264 608 QIKFWDMDNVNILTSTDA----------EGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~----------~~~~~~v~~v~~sp~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (945)
..+++|....+......+ .+|...+++.+|+|+ ...+++++.||++|||++...+...+.+........
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999877666554433 356778999999995 567889999999999999887666666666666667
Q ss_pred cCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeee
Q 002264 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (945)
Q Consensus 677 ~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (945)
+-+++..+|++||+.+ ++|..||.|.+|+..+........
T Consensus 317 Rv~~tsC~~nrdg~~i-------------------------------------Aagc~DGSIQ~W~~~~~~v~p~~~--- 356 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLI-------------------------------------AAGCLDGSIQIWDKGSRTVRPVMK--- 356 (641)
T ss_pred ccCceeeecCCCcchh-------------------------------------hhcccCCceeeeecCCcccccceE---
Confidence 7778888888888776 577778999999975433222222
Q ss_pred cCCCCCCcc--ceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCce
Q 002264 757 MPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834 (945)
Q Consensus 757 ~~~~~~~~~--~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 834 (945)
+. .+|.. .|++++||+||++|++-+.|+++++||+...... + ...+| +. ...+-
T Consensus 357 vk--~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp----------L---~~~tg------L~---t~~~~ 412 (641)
T KOG0772|consen 357 VK--DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP----------L---NVRTG------LP---TPFPG 412 (641)
T ss_pred ee--eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc----------h---hhhcC------CC---ccCCC
Confidence 12 22554 8999999999999999999999999998532210 0 00011 11 34556
Q ss_pred eEEeecCCCceEEecC-------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 835 PCIALSKNDSYVMSAT-------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 835 ~~l~~s~dg~~la~~s-------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
+.++||||.++|++|. .|++.+||..+.+.+.++.-....|..+.|+| .=+.|..|+.||+++||=
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEE
Confidence 7899999999999994 25699999999999999887788899999999 778888899999999874
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=225.42 Aligned_cols=277 Identities=15% Similarity=0.197 Sum_probs=226.4
Q ss_pred CCCeEEEEEEcCCCCE-EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 537 PGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
....|.+++|+|...+ +++++ ...+.+|+..+....+++....+ .+.++.|-.||+.+++|...|.|++||+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 3457999999995543 44443 56799999999888887877776 79999999999999999999999999988
Q ss_pred CCeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceec
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
+...+..+..|.+ +|..+.|+| ++.++++|++|+.+++||+.+.. ..
T Consensus 99 ~r~iLR~~~ah~a--pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~----------------------------- 146 (487)
T KOG0310|consen 99 SRVILRQLYAHQA--PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQ----------------------------- 146 (487)
T ss_pred cHHHHHHHhhccC--ceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EE-----------------------------
Confidence 7777777777655 999999999 56678888889999999997662 11
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEec
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 774 (945)
..+. +|.+.|.+.+++|
T Consensus 147 ------------------------------------------------------------~~l~---~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 147 ------------------------------------------------------------AELS---GHTDYVRCGDISP 163 (487)
T ss_pred ------------------------------------------------------------EEec---CCcceeEeecccc
Confidence 0111 2888899999988
Q ss_pred CC-CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCe
Q 002264 775 SA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (945)
Q Consensus 775 dg-~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~ 853 (945)
.. ..+++|+.||.|++||..... .. .....|..+|..+.+-|.|..+|+++...
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~--------------------~~-----v~elnhg~pVe~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLT--------------------SR-----VVELNHGCPVESVLALPSGSLIASAGGNS 218 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCC--------------------ce-----eEEecCCCceeeEEEcCCCCEEEEcCCCe
Confidence 64 467888889999999864321 00 11123889999999999999999999999
Q ss_pred EEEEeccCceE-EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeee
Q 002264 854 ISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 854 i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 932 (945)
|+|||+.+|.. +..+..|...|||+++.. ++..|.+|+-|+.|+|||+.+.+.+..+. ..++|.+++.+||++.++.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEE
Confidence 99999996544 444555999999999999 88999999999999999999999988887 6789999999999999999
Q ss_pred ecCCceEEE
Q 002264 933 SGADAQVTL 941 (945)
Q Consensus 933 ~~~Dg~i~v 941 (945)
|..||.+.+
T Consensus 297 GmsnGlv~~ 305 (487)
T KOG0310|consen 297 GMSNGLVSI 305 (487)
T ss_pred ecccceeee
Confidence 999998754
No 105
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=240.85 Aligned_cols=255 Identities=13% Similarity=0.192 Sum_probs=187.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce--------eeccccccEEEEEEec---CCCeeEEEEEe
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS--------QIDAHVGAVNDLAFAY---PNKLLCVVTCG 472 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~--------~~~~h~~~v~~l~~s~---~~~~~~l~s~s 472 (945)
.|.+.|.++.||+||+|||+||.||.|+||.+...+....-. .+. -.+.+..+.-++ .+.....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-ANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-hccccCcccccccccccccccccccc
Confidence 899999999999999999999999999999987633211000 000 000011111111 01100112222
Q ss_pred CCCcEEEEe----CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC
Q 002264 473 DDKLIKVWE----LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (945)
Q Consensus 473 ~d~~i~vwd----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~ 548 (945)
....+.+-+ ...+++..|.||.+.|.++.|+-+ ++|++++.|.+|++|++....++..+ .|...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 222322222 455778899999999999999743 69999999999999999988887776 5677899999999
Q ss_pred -CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 549 -DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 549 -~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
|.+++++|+- |+.++||++...+.+.....+ ..|++++|.|+|+..++|+.+|.+++|+....+.........
T Consensus 420 vDDryFiSGSL----D~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDDRYFISGSL----DGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCCCcEeeccc----ccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 7889999987 999999999988887776665 379999999999999999999999999999888776654432
Q ss_pred C------CCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccC
Q 002264 628 G------LPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 628 ~------~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+ ...|+.+.|.| +...+++.+.|..|||+|.++. .++..+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG 542 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKG 542 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcc
Confidence 2 12699999998 3445777889999999999665 44544444
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=245.61 Aligned_cols=257 Identities=19% Similarity=0.332 Sum_probs=220.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|+............+|.+.|++++|..-+. +|++|+.|.+++|||..+|++.. ++.+|.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~-------------------~l~gh~ 291 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTH-------------------SLQGHT 291 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEE-------------------EecCCC
Confidence 5666554444444567999999999998554 79999999999999999999874 488999
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
+.|.++... +.++++|+.|.+|++|++.++..+. .+.+|.++|.++... +. ++++|+.|++|++|| .+++
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhhce
Confidence 999999874 5578889999999999999998777 677799999999998 55 899999999999999 9999
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
++..+.+|...|+++.+... ..+++|+.|++|++||+++. ++...+..|...+..+. ..++.|++++. |+
T Consensus 363 cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a----D~ 433 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA----DG 433 (537)
T ss_pred eeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----cc
Confidence 99999999999999976432 68999999999999999999 88889988888775554 46788999887 88
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
.|++||..+++.++++.+.+...+..+++. ...+++++.||.+++||++++.+...+
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999998533367777665 468999999999999999999988766
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.6e-25 Score=206.86 Aligned_cols=278 Identities=16% Similarity=0.179 Sum_probs=215.4
Q ss_pred CCCccEEEEEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-
Q 002264 404 DVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 404 ~h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
..++.|.+++||| ...++++|+-||+||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 4678999999999 556667889999999999987422222 24567999999999999998 889999999999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
.++ .+..+..|.++|.++.|.+..+-..|++|+.|++|+.||.+....+.++..++. +.++.. -..+++++..
T Consensus 102 ~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv--~~pm~vVata--- 174 (347)
T KOG0647|consen 102 ASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV--LYPMAVVATA--- 174 (347)
T ss_pred cCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc--cCceeEEEec---
Confidence 555 667888899999999998876667899999999999999999888888877664 444433 2345555554
Q ss_pred CCceEEEEeCCCCcee-eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe--eEEEeecCCC-------CCC
Q 002264 562 GDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG-------LPN 631 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~-------~~~ 631 (945)
+..|.+|+++.+... +.....-+..+++++..++....+.|+-+|.+.+..++.+. .-..+..|.. .-.
T Consensus 175 -~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 -ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred -CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 888999999765432 23333334468889988888888999999999999988863 3333444432 235
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
|++++|+|....|+++|.||++.+||-... ..++..+ .+..+|++-.|+.+|.+++.+.+.
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~-----~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSE-----THPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh-hhhhccC-----cCCCccceeEecCCCCEEEEEeec
Confidence 789999999999999999999999998765 3333333 344579999999999998865543
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4.7e-25 Score=243.26 Aligned_cols=248 Identities=17% Similarity=0.235 Sum_probs=203.2
Q ss_pred cCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEEccCC--------c-ccccceeeccccccEEEEEEecCCCeeEEEEE
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAF--TKHLIQLYSYAGS--------N-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~--~dg~i~vwd~~~~--------~-~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
..+...|.+|..+|||..+|+|+ .||.++||+.+.- . ..+.......|.+.|+|+.|+|||+ +||+|
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsG 87 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASG 87 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeec
Confidence 33567799999999999999999 8999999987521 1 1233345678999999999999999 99999
Q ss_pred eCCCcEEEEeCC--------C-----------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE
Q 002264 472 GDDKLIKVWELS--------G-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (945)
Q Consensus 472 s~d~~i~vwd~~--------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (945)
|.|+.|.+|+.. | +.+..+.+|...|..++|+| ++.++++++.|++|.+|+..+.+...
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceeee
Confidence 999999999933 1 25678899999999999988 66999999999999999999998889
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----cceEEEEEcCCCCEEEEEE---
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVG--- 604 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~--- 604 (945)
.+.+|...|..+.|.|-|+++++-+. |++|++|+..+....+.+.++.. ..+..+.|+|||.+|++..
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeecccccccceEECCccCeeeeecC----CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 99999999999999999999999986 99999999888777777665543 1356689999999999864
Q ss_pred -CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC-----CC------------EEEEEECCCcEEEEECCC
Q 002264 605 -EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-----GN------------LLAVTTADNGFKILANAI 660 (945)
Q Consensus 605 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-----g~------------~l~~~~~dg~i~iw~~~~ 660 (945)
.-..+.|.+..+.+.-..+-+|.. ++.++.|+|. .+ .+|+|+.|++|.||....
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 345688888877777777766654 8999999982 11 566777777777776643
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-24 Score=205.25 Aligned_cols=267 Identities=18% Similarity=0.268 Sum_probs=211.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.|..|.|+|.+.. |++++.||++++||+....... .-.|..++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 458999999999986 5556799999999998764331 234889999999986 567889
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
|+.||.|+.+|+.++... .+..|..+|.|+.+++... .+++||.|++|++|| ........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998765 3677999999999998777 899999999999999 5433444443 3447888875
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC----ce
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TI 576 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~----~~ 576 (945)
.++.|+.|+.|..|.+||+++.......... .-.+.++++.|++.-.++++. +|.+.+=.+... +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 3468999999999999999987666533222 237899999998877777775 777776555544 33
Q ss_pred eeEeccccC--------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 577 ~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
...|..|.. .+|++++|+|-...|++||.||.|.+||+.+.+.+..+.... ..|.+++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEEe
Confidence 445555543 247889999999999999999999999999988888776543 3799999999999999987
Q ss_pred C
Q 002264 649 A 649 (945)
Q Consensus 649 ~ 649 (945)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 110
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=205.62 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=205.5
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3477899999999985 9999999999999999999887766 5667999999999998764226899999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|+ ..-.++..+++|.+.|+.++++|++ ++-++.+.|+.+++||+-.+..-+....... .+.+.|+|.|.+++..+
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~- 187 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG- 187 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-
Confidence 99 7888999999999999999999964 8899999999999999988877666555433 34599999999888887
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE-
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF- 637 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 637 (945)
...|-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||.++..+...+..|.. .|.++.+
T Consensus 188 ----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~ 258 (362)
T KOG0294|consen 188 ----RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASY 258 (362)
T ss_pred ----ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEE
Confidence 5679999998877766655432 34445554 467999999999999999999888888887754 8888874
Q ss_pred -cCCCCEEEEEECCCcEEEEECCCC
Q 002264 638 -SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 638 -sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999765
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=210.07 Aligned_cols=290 Identities=12% Similarity=0.177 Sum_probs=237.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.+|.+.||.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|++|+|++.+.+
T Consensus 145 ~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~L 204 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGLL 204 (481)
T ss_pred cccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccce
Confidence 35999999999987776 899999999999999999999854 8899999999999999999
Q ss_pred EEEEECCCcEEEEEc------cC--------Cc----------------------cc-ccceeeccccccEEEEEEecCC
Q 002264 421 VGVAFTKHLIQLYSY------AG--------SN----------------------DL-RQHSQIDAHVGAVNDLAFAYPN 463 (945)
Q Consensus 421 las~~~dg~i~vwd~------~~--------~~----------------------~~-~~~~~~~~h~~~v~~l~~s~~~ 463 (945)
+++++.|++-.||.. .. ++ .+ .++..+.+|.+.|.++.|...|
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 999999999999972 11 00 01 1223578999999999999999
Q ss_pred CeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeE
Q 002264 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWC 541 (945)
Q Consensus 464 ~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i 541 (945)
+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|. .+++++.+.|.+.++||++.. ..+..+.+|...|
T Consensus 285 ~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 285 Q--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred c--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 9 899999999999999 999999999999999999998874 489999999999999999743 3445788999999
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+++.|..+.+ +++++. |.+|++||+++.+ ++.++... ..++.++++..+..++.--.+..|++||++...+.
T Consensus 361 TS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 361 TSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred eEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 9999987654 667664 8999999998754 55566543 35778889888888888888899999999765543
Q ss_pred EEe--ecCCCCCCccEEEEcCCC--CEEEEEECCCcEEEEECCCC
Q 002264 621 TST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~--~~~~~~~~v~~v~~sp~g--~~l~~~~~dg~i~iw~~~~~ 661 (945)
..- ...+|...|.|++|..+. .-|++++.|..+.=|++...
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 222 223455579999998753 35788999999999998654
No 112
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=5.7e-24 Score=234.06 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=193.2
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCc--------eEEEecCC
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~--------~~~~~~~~ 493 (945)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|+||+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567888999998665433 368899999999999997 56 899999999999999 4432 34567899
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|..|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998532 456799999999999999988776665 4567999999999999998875 88999999999
Q ss_pred CceeeEeccccCcc----eEEEEEcCCCCEEEEEECCC----cEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 574 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
++.+..+.+|.+.. +....|++++.++++++.|+ .|++||+++ +.++..+..+.+.+.+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887632 22234568889999988664 799999985 6677666655544344444445579999
Q ss_pred EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
++|+.|+.|++|++..+. +..+... ....+...++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~~---~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNEY---KSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeeccc---ccCCCccceEEccccc
Confidence 999999999999997652 2222211 1335677788888643
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=210.18 Aligned_cols=239 Identities=15% Similarity=0.257 Sum_probs=211.9
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999887666 7899999999999999998 899999999999999 5566
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
.......|..+|+.+..+|+ |.||++++.||+..+.|++++......... +-.+++.+|+|||-.+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 67778889999999999884 579999999999999999998887665543 336899999999999998886 9
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
+.+++||+.++..+..|.+|.. .|..++|+.+|-+++++++|+.|++||++..+..+++...... ++.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999887 8999999999999999999999999999998888888776644 7999999999999
Q ss_pred EEEEECCCcEEEEEC
Q 002264 644 LAVTTADNGFKILAN 658 (945)
Q Consensus 644 l~~~~~dg~i~iw~~ 658 (945)
|+.++.|=.|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999987766666553
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-25 Score=201.36 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=208.2
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec--CCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~~~l~s~s~d~~i 477 (945)
.+-..|++.|..+...--|+.||||+.|++|+|+.+..+.....+.+|.+|.++|+.++|.. -|. +|++++.||.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkV 82 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKV 82 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceE
Confidence 34567999999999988999999999999999999998776667778999999999999987 677 99999999999
Q ss_pred EEEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC---eeEEecCCCCeEEEEEEcCC--
Q 002264 478 KVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSAD-- 549 (945)
Q Consensus 478 ~vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~-- 549 (945)
.||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999 5553 34567789999999999999889999999999999999987762 12234556678999999986
Q ss_pred -C-----------CEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCC----CEEEEEECCCcEEE
Q 002264 550 -G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKF 611 (945)
Q Consensus 550 -~-----------~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i 611 (945)
| +.|++++. |..|++|+..+++ ..+++.+|.+ -++.++|.|.- .++++++.||++.|
T Consensus 163 ~g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 4 56899886 8999999988763 4456888887 89999999964 57999999999999
Q ss_pred EECCCC-eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 612 WDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 612 wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
|..+.. +.-+..-.+.-...+..+.||..|+.|++++.|+.|.+|.-..
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 987632 1111111122234789999999999999999999999997643
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.5e-24 Score=201.40 Aligned_cols=295 Identities=13% Similarity=0.167 Sum_probs=223.6
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
+.|.....++.|.. -.|+.||+.|. +||+|..||.|.|||+.+...- +++.+|..+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 34555667777766 89999999998 5999999999999999886633 568899999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF- 490 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~- 490 (945)
++||+||+.|++++.|..|.+||+..|.+++.+ ...++|+.+.|.|...+..++ +-.+..-.+-+.+. .++++
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~-~~h~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSD-PKHSVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecC-Cceeec
Confidence 999999999999999999999999999877643 267899999999977653444 33344444445222 12221
Q ss_pred cC-CCCCE----EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 491 EG-HEAPV----YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 491 ~~-~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.. ..+.. .+..| +..|+++++|...|.+.++|..+.+.+..+.... ..|..+.++..|+.++..+. |.
T Consensus 145 p~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DR 218 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DR 218 (405)
T ss_pred cCCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cc
Confidence 11 11111 11123 4467999999999999999999998888777665 68999999999999999886 99
Q ss_pred eEEEEeCCCC-------c--eeeEecc-ccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 565 FLVEWNESEG-------T--IKRTYAG-FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 565 ~i~iwd~~~~-------~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
.|+.|+++.- + +.++++. -+...-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ ....
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 9999998631 1 1122221 1112345689999999998887 456799999999999999977653 3678
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 89999988888877 6789999987543
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=202.05 Aligned_cols=313 Identities=14% Similarity=0.132 Sum_probs=206.4
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccc--ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..+++|.+.|++++||.||++||+++.|++|++|+++.-..- +.+ ...-.-+..+.++|+||-+. +++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 458899999999999999999999999999999999763211 110 01111224678999999986 56666666778
Q ss_pred EEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
++|....+.-.. .+...+. ||--. .-..|.-.+..+-....+++|++++
T Consensus 158 ~vyk~~K~~dG~-----~~~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 158 CVYKLVKKTDGS-----GSHHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEeeecccCC-----CCccccc---------------------ccccc-----cchhcccceEEEeecCCceEEEEec
Confidence 888722211111 1111111 11000 0011222344455566778888887
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC---CC---eeEEEeecCCCCCC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD---NV---NILTSTDAEGGLPN 631 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~~ 631 (945)
. +..|.+|+++ |+.+..+..... .....+++|+|+++++++..-.|++|..- .| +..+.+...+|...
T Consensus 207 ~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 207 L----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred C----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 5 7789999988 888777776554 45668899999999999999999999863 22 23445556667779
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (945)
|..++|+++...+++.+.||.+++||.+-..+.-+ |-+.|
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q---------------------Dpk~L------------------- 320 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ---------------------DPKIL------------------- 320 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCC---------------------CchHh-------------------
Confidence 99999999999999999999999999853211000 00000
Q ss_pred CCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEE
Q 002264 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (945)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw 791 (945)
+.. ..+. +...+....++.+|.|+.|+.+. ...++++
T Consensus 321 ---------------------------k~g--------------~~pl-~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 321 ---------------------------KEG--------------SAPL-HAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred ---------------------------hcC--------------Ccch-hhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 000 0000 00222334789999999666543 4467766
Q ss_pred eecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEe
Q 002264 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFN 858 (945)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd 858 (945)
.- ++|+.+...-.. |...|.+++|+++|+++|+++|..++++.
T Consensus 358 ~s----------------------e~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 358 AS----------------------EDGKDYPELEDI--HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred Ec----------------------ccCccchhHHHh--hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 43 333322221222 89999999999999999999999999886
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-22 Score=182.64 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=199.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEcc------CCcc------cccceeeccccccEEEEEEecCCCeeEEEEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA------GSND------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~------~~~~------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
..+..|.+++|.|.|.+.|+|+...+.+|-... .+.. ....+.-+.|.+.|+|.+|+|+|+ ++++|
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liatg 107 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIATG 107 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEec
Confidence 356789999999999999999999998876432 1111 111123456899999999999999 99999
Q ss_pred eCCCcEEEEe-C--CCc---eEEEecCCCCCEEEEEeeecC--CccEEEEEE-cCCeEEEEEccCCCeeEEecCCCCeEE
Q 002264 472 GDDKLIKVWE-L--SGR---KLFNFEGHEAPVYSICPHHKE--NIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (945)
Q Consensus 472 s~d~~i~vwd-~--~~~---~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (945)
+.|++|++.- . +.. .-..|.-|.+.|..++|...+ .+.+|++++ .|..|.+-|...++....+.+|.+.|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 9999999875 2 221 124677899999999996433 456677665 466777788888999999999988887
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------cCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++ ++-+|-++++++ +|.+|++||++-...+.++... ....+..+++.|.|+.+++|-.|....+||++.
T Consensus 188 al-yswn~~m~~sgs----qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGS----QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EE-EEecCcEEEccC----CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 65 455678888887 4999999999988888776432 224588899999999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++.+..|. ..|.++.|+|...++.+++.|..|++-|++..
T Consensus 263 ~r~iq~f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 263 GRMIQRFHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CceeeeeCCCc--cceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999987664 48999999999999999999999999988643
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.7e-24 Score=216.92 Aligned_cols=292 Identities=14% Similarity=0.219 Sum_probs=232.1
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
+.+.++.|..-|.++.+|...++ +.||+ .|.|+|||+...... .++.-. . .....+.|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k--~PvsqL-----------d-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNK--SPVSQL-----------D-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCC--Cccccc-----------c-ccCcccceeeeEec
Confidence 35677889999999999999986 89988 689999998654211 111100 1 12245789999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
|||+.|++|+.-.++.|||+..... +....+..-.-..++++.+||.+ +.+++..||.|.||| .+...++.|.+|.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987532 22224444445688899999999 788888899999999 7777889999999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
+.+.||.++. +|..|.+|+-|.+||.||++.+........ ...|.++.++|.+.+++++-. ++.+.+......
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp 624 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP 624 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc
Confidence 9999999865 778999999999999999998877665443 346999999999999999875 666766654332
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
....+..|.. .|-++.|.+.|+++++.+.|+-+..|....|..+..... ...|.++.++.|.+++++|+.|....
T Consensus 625 -~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 625 -EKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred -cceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 2233444444 788999999999999999999999999998887766543 34799999999999999999998888
Q ss_pred EEEC
Q 002264 655 ILAN 658 (945)
Q Consensus 655 iw~~ 658 (945)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8764
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.3e-24 Score=200.76 Aligned_cols=291 Identities=16% Similarity=0.219 Sum_probs=240.3
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.||...|..++-......+.+++.|.+.+||.+++|.++. .+.||.+.|.++.|++.+. ++++++.|++..||
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIW 217 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHH
Confidence 378999999999998888899999999999999999998887 7889999999999999998 89999999999999
Q ss_pred e--CCC---------------------------------------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCe
Q 002264 481 E--LSG---------------------------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (945)
Q Consensus 481 d--~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (945)
. .+- .++..+.+|.+.|.+..|.. .|+.+++++.|.+
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTASWDRT 295 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeeecccc
Confidence 4 100 12566789999999988865 5688999999999
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCCC
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
-.+||+++++.+..+.+|....+.++-+|..+.+++.+. |.+.++||.+.. ..+..|+||.+ .++++.|..+ .
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr----DtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~d-d 369 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR----DTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTD-D 369 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEecc----CceeEeccchhhcceeeeeccccc-ceeEEEEecC-C
Confidence 999999999999999999999999999999999998885 899999999853 45678999988 8999999875 5
Q ss_pred EEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 599 HFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
.+++|+.|.+|++||+++. .++.++.... +++.++.+..+..++.--++..|++||+... ++.+ +.......++
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaR-lPrtsRqgHr 444 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLAR-LPRTSRQGHR 444 (481)
T ss_pred ceeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCC-cccc-CCcccccccc
Confidence 7899999999999999885 4666666543 7899999999999999999999999999654 3332 3323334455
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
--+.+.+|..+.. -.-+++++.|..+.-|.+.
T Consensus 445 RMV~c~AW~eehp-----------------------------------~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 445 RMVTCCAWLEEHP-----------------------------------ACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eeeeeeeccccCc-----------------------------------ccccccccccceeeeeEec
Confidence 5577777764421 1235678888888888875
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-22 Score=215.14 Aligned_cols=466 Identities=15% Similarity=0.153 Sum_probs=299.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCe-eEEEEEeCCCcEEEEe-CCCce
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
-..-.||+|+++++.+.. ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..
T Consensus 19 ~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ecccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 334578999999988765 579999999999888 78899999999999987663 3778999999999999 88888
Q ss_pred EEEecCCCCCEEEEEeeec--CCccEEEEEEcCCe------------EEEEEccCCCeeE-EecCCCCeEEEEEEcCCCC
Q 002264 487 LFNFEGHEAPVYSICPHHK--ENIQFIFSTAIDGK------------IKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg~------------i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~ 551 (945)
+.++..+. ++..+.+.+. .....+..+..|.. ++-+.+.+..... .+......-.++.+++.|.
T Consensus 95 lkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 88776433 2333322110 01111112222221 1111111110000 0000011135678888888
Q ss_pred EEEEEeecCCCCceEEEEeCCCCcee---eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--Ce--eEEEee
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VN--ILTSTD 624 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~ 624 (945)
+...+. +..+.+|........ +....++...+++.+++|+++++++|..||+|.+|.--. +. ....+.
T Consensus 174 ~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 174 FKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred EEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 877776 667899998775411 112223333478899999999999999999999996433 22 233444
Q ss_pred cCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccc
Q 002264 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~ 704 (945)
.| ..+|++++|+++|.+|.+||..|.+.+|.+.++.+ ++- +-..++|..+.++||+...+..
T Consensus 249 WH--~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qfL----PRLgs~I~~i~vS~ds~~~sl~--------- 310 (792)
T KOG1963|consen 249 WH--HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK---QFL----PRLGSPILHIVVSPDSDLYSLV--------- 310 (792)
T ss_pred ec--ccccceeEEecCCceEeecccceEEEEEeecCCCc---ccc----cccCCeeEEEEEcCCCCeEEEE---------
Confidence 44 34899999999999999999999999999998852 221 1245678999999998876432
Q ss_pred ccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCC---CCCCccceEEEEEecCCCeEEE
Q 002264 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE---STDTSSKVVRLLYTNSAVGLLA 781 (945)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~s~dg~~l~~ 781 (945)
..|+.|.+....+.........+..+. .....+-.+.+.++|.-+.++.
T Consensus 311 ----------------------------~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 311 ----------------------------LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred ----------------------------ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 223444444332211111111111000 0113345677889997777888
Q ss_pred eeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC---------CC
Q 002264 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---------GG 852 (945)
Q Consensus 782 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s---------d~ 852 (945)
.+..|.|.+||+-.... .....+...+...|.. .+...+++++.+..|.+++++- ||
T Consensus 363 n~~~g~vQ~ydl~td~~------i~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDST------IYKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred cCCCceEEEEeccccce------eeeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 89999999999754331 1222222233333331 1445688899999999999872 33
Q ss_pred e--EEEEeccCc----eEEEEe-cCCCCCeeEEEeecCCCc-eEEEeecCceEEEEecccc----------eEEEEecCC
Q 002264 853 K--ISLFNMMTF----KVMTTF-MSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD----------EVKSKLKGH 914 (945)
Q Consensus 853 ~--i~iwd~~~~----~~~~~~-~~h~~~i~~l~~s~~~~~-~lasg~~dg~v~vwd~~~~----------~~~~~l~~h 914 (945)
. +++|-.... .+...+ ..|...+...+|.+.-.. ..++++.||.++||-+... .|...-.-|
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 3 889965533 332222 357777666555542333 8899999999999988321 243333348
Q ss_pred CcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
..++++++|+.||. +++++.|++|.+||.+
T Consensus 509 k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 509 KTPITALCFSQDGS-LLAVSFDDTITIWDYD 538 (792)
T ss_pred cCcccchhhcCCCc-EEEEecCCEEEEecCC
Confidence 89999999999995 5557888899999963
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1e-23 Score=210.72 Aligned_cols=223 Identities=15% Similarity=0.172 Sum_probs=192.9
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C--
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-- 482 (945)
.++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+++.|+.||. +|+|||.||.|.+|. .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999999999999999998777 6789999999999999999 999999999999997 2
Q ss_pred -------CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 483 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+-++++.|..|.-+|+++...+.+-..++++++.|.++++||+..+.....+..+ ..+.+++.+|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356789999999999999887756679999999999999999998877776654 46899999999999999
Q ss_pred EeecCCCCceEEEEeCCCC----------------ceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 556 CGTSKDGDSFLVEWNESEG----------------TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~----------------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++. +|.|.+.++... ..+..+.+|.+ ..|+|++++.||..|++|+.||.++|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 888988776432 23456667766 579999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+++++... .++|+.+.+.|=
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 99888743 348999998763
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.4e-23 Score=195.70 Aligned_cols=272 Identities=16% Similarity=0.108 Sum_probs=209.9
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....|+++.|+|.+..|++++.||++++|++...+... .-.|..++.+++|.++. .+++|+-||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADES---TIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCc---eEEEeccCceEEEEEecC
Confidence 46789999999999999999999999999998864332 23599999999999865 489999999999999655
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.....+..|..+|.|+...+.. ..+++|+.|++|++||.+.......+.... .|.++..+ |..|++++. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeec----Cc
Confidence 5566777899999999998644 579999999999999998744444444333 67777654 667777664 88
Q ss_pred eEEEEeCCCCceee-EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eeEEEeecCCC-------CCCc
Q 002264 565 FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (945)
Q Consensus 565 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (945)
.+.+||+++..... .....-+..+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865433 222222336889999999999999999999988666554 22333333321 1378
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
++++|+|-...||+|+.||.|.+||+.+. +.++.+... ...|.+++|+.+|..||.+...
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~-----~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY-----ETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC-----CCceEEEEeccCCCeEEEEech
Confidence 99999999999999999999999999887 444444443 2358899999999999876553
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-23 Score=196.61 Aligned_cols=262 Identities=16% Similarity=0.235 Sum_probs=212.9
Q ss_pred EEEEEcCCeEEEEEccCCC------------eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 511 IFSTAIDGKIKAWLYDTMG------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
|++|+....|.-+++.... ..+.+..|...+++++.+ +.++++++. |.+|++||++....+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGss----DetI~IYDm~k~~qlg 77 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSS----DETIHIYDMRKRKQLG 77 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCC----CCcEEEEeccchhhhc
Confidence 5666666666666554322 234566788899999974 889999986 8899999999999888
Q ss_pred EeccccCcceEEEEEcCCCC--EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 579 TYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.+..|.+ .++++.|.+... +|++|+.||.|.+|+.....++..+..|.+ .|+.++.+|.|++-.+.+.|+.+++|
T Consensus 78 ~ll~Hag-sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 78 ILLSHAG-SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred ceecccc-ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecCCCceEEEEcCCceeeee
Confidence 8888866 899999998764 999999999999999999999999998876 69999999999999999999999999
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
|+-.|....
T Consensus 155 NLV~Gr~a~----------------------------------------------------------------------- 163 (362)
T KOG0294|consen 155 NLVRGRVAF----------------------------------------------------------------------- 163 (362)
T ss_pred hhhcCccce-----------------------------------------------------------------------
Confidence 997661100
Q ss_pred CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCC
Q 002264 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (945)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (945)
+-++
T Consensus 164 ---v~~L------------------------------------------------------------------------- 167 (362)
T KOG0294|consen 164 ---VLNL------------------------------------------------------------------------- 167 (362)
T ss_pred ---eecc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred CcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 817 ~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
....+.+.|+|.|.+++.+..+.|-||.+++......+.. ...+.|+.|. ++..|++|.+|+.
T Consensus 168 --------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 168 --------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEW 230 (362)
T ss_pred --------------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCce
Confidence 0112237788888888888888899999888776666653 3557888887 4678999999999
Q ss_pred EEEEecccceEEEEecCCCcceeEEEe--cCCcceeeeecCCceEEEEecC
Q 002264 897 IHIYNVRVDEVKSKLKGHQKRITGLAF--STSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 897 v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
|.+||..++.+...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 999999999999999999999999985 4788999999999999999974
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.2e-24 Score=212.32 Aligned_cols=294 Identities=16% Similarity=0.235 Sum_probs=219.5
Q ss_pred EEcC-CeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEE
Q 002264 514 TAID-GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 514 ~~~d-g~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 591 (945)
++.| ..+.+||++++.....+.+... .-.++.. -.+.+++++.. +...+.+|.+............. +.+.++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~---~rp~l~vw~i~k~~~~~q~~v~P-g~v~al 87 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL---KRPLLHVWEILKKDQVVQYIVLP-GPVHAL 87 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc---cCccccccccCchhhhhhhcccc-cceeee
Confidence 3344 4589999999999988876522 1112211 12356776654 35689999987654443222222 268899
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC
Q 002264 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (945)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (945)
+-+|.|.+++.|+..|.|++|.+.+|.++..+..| ...|+++.|+-||.+|++|+.||.|.+|.+.+- +.....+
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l---v~a~~~~ 162 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL---VSADNDH 162 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEee---cccccCC
Confidence 99999999999999999999999999999988655 559999999999999999999999999988532 1111000
Q ss_pred ccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCc
Q 002264 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ 751 (945)
Q Consensus 672 ~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 751 (945)
.. .-++.|
T Consensus 163 ~~--------------------------------------------------------------~p~~~f---------- 170 (476)
T KOG0646|consen 163 SV--------------------------------------------------------------KPLHIF---------- 170 (476)
T ss_pred Cc--------------------------------------------------------------cceeee----------
Confidence 00 011112
Q ss_pred ceeeecCCCCCCccceEEEEEecC--CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 752 CRLVTMPESTDTSSKVVRLLYTNS--AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 752 ~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
. .|.-.|+++...+. ..++++++.|.++++||+.. |.++....
T Consensus 171 ------~---~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~---- 215 (476)
T KOG0646|consen 171 ------S---DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT---- 215 (476)
T ss_pred ------c---cCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----
Confidence 1 27778888877765 45799999999999998643 22222111
Q ss_pred cCCceeEEeecCCCceEEecC-CCeEEEEeccC----------------ceEEEEecCCCC--CeeEEEeecCCCceEEE
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT----------------FKVMTTFMSPPP--ASTFLAFHPQDNNIIAI 890 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~----------------~~~~~~~~~h~~--~i~~l~~s~~~~~~las 890 (945)
....+.+++++|-++.+.+|+ +|+|.+.++.. +..+..+.||.+ .|+|++++- ||.+|++
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLS 294 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEe
Confidence 356799999999999999998 89988876542 334667889998 899999999 9999999
Q ss_pred eecCceEEEEecccceEEEEecCCCcceeEEEecC
Q 002264 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 925 (945)
Q Consensus 891 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 925 (945)
|+.||.|+|||+.+.++++++..-.++|+.+.+.|
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999999999999999999887778999999954
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=210.71 Aligned_cols=265 Identities=12% Similarity=0.231 Sum_probs=210.7
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....+.|.++|+.+.+-|....++|+++..+.|.|||..+..-.... .......-.+.||...=++++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 34456799999999999999999999999999999998754332210 000012235889998888899999
Q ss_pred C-CCEEEEEECCCcEEEEEccCCcc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C--CCceEE
Q 002264 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (945)
Q Consensus 417 ~-g~~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~--~~~~~~ 488 (945)
. .-.|++|+.|++|++||+..... +.....+.+|...|..++|++-... +|++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 5 45789999999999999976443 4555578899999999999998776 899999999999999 6 556677
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
...+|.+.|+|++|+|.. +.+|++|+.|++|.+||++... ....+..|...|..+.|+|....+++.+. .|+.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 888999999999999985 5899999999999999998754 45688899999999999997765554432 399999
Q ss_pred EEeCCCC--------------ceeeEeccccCcceEEEEEcCCCCEEE-EEECCCcEEEEECCC
Q 002264 568 EWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDN 616 (945)
Q Consensus 568 iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 616 (945)
+||+..- +++..-.||.. .|..+.|+|...+++ +.++|+.+.||.+..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9998642 22344456665 688899999887655 467999999999863
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=5.1e-23 Score=215.14 Aligned_cols=281 Identities=15% Similarity=0.255 Sum_probs=225.2
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE-EEEcC-CCCEEEEEECCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSK-EGNLLAVTTADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp-~g~~l~~~~~dg~ 652 (945)
++.+.+.+|.. .+..+++.+ +..++++|.||++++|+-..++.+......++.+.|.. +++-+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 44567778877 677777655 45899999999999999988777665545444445655 77775 5667999999999
Q ss_pred EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcccc
Q 002264 653 FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVD 732 (945)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 732 (945)
|.+|...+. ..+..+.+|... |.++....++. +++|
T Consensus 83 i~v~~~~~~-~P~~~LkgH~sn-----VC~ls~~~~~~--------------------------------------~iSg 118 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTLKGHKSN-----VCSLSIGEDGT--------------------------------------LISG 118 (745)
T ss_pred EEEEecCCC-Cchhhhhccccc-----eeeeecCCcCc--------------------------------------eEec
Confidence 999999877 777888887664 55665544443 4799
Q ss_pred CCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecccc
Q 002264 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (945)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 812 (945)
+.|.++++|....... .++ +|...|.+++.-|++ .+++++.|.+|++|.
T Consensus 119 SWD~TakvW~~~~l~~-------~l~---gH~asVWAv~~l~e~-~~vTgsaDKtIklWk-------------------- 167 (745)
T KOG0301|consen 119 SWDSTAKVWRIGELVY-------SLQ---GHTASVWAVASLPEN-TYVTGSADKTIKLWK-------------------- 167 (745)
T ss_pred ccccceEEecchhhhc-------ccC---CcchheeeeeecCCC-cEEeccCcceeeecc--------------------
Confidence 9999999999864222 133 499999999999998 699999999999994
Q ss_pred ccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee
Q 002264 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 813 ~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~ 892 (945)
.++.+. .+.+ |.+-|..+++-+++.++-++.||.|++|++ +|+++.++.+|++.|.++.... ++..+++++
T Consensus 168 ----~~~~l~-tf~g--HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~g 238 (745)
T KOG0301|consen 168 ----GGTLLK-TFSG--HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIVSTG 238 (745)
T ss_pred ----CCchhh-hhcc--chhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEEEec
Confidence 122222 3666 999999999999988877777999999999 7899999999999999999877 778999999
Q ss_pred cCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 893 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
+|++++||+.. ++.+.+.-..-.|+++.+-++|. +++|+.||.||||-.
T Consensus 239 EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 239 EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 99999999976 78888886666899999998875 556899999999964
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.6e-23 Score=203.85 Aligned_cols=287 Identities=11% Similarity=0.212 Sum_probs=232.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC-EEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-~la 422 (945)
.+.|++|.|+|..+ +|.+++.||+++||.+.......- +.+.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l-----------------qS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL-----------------QSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh-----------------eeeeeccCccceeeecCCCceEEE
Confidence 46999999999998 799999999999999865432211 11222356899999999999 899
Q ss_pred EEECCCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
+++.....+.||+.+.+..+.. .+.++. ..+.....+++++ +++..|..|.|.+-. .+++.+..++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~-~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLK-PPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccccc-CCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999987654322 334444 4677888999999 899999999999999 8888888877 57789999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC------
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~------ 573 (945)
+|+. +++.|++++.+|.|.+||++...+...+...+. .-++++.++++.++++++. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 678999999999999999999988887766655 4578889999999999985 89999999653
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECC
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+++..+..-.. .|+.+.|+++...|+.++ .+..+++-.+.+.....-++... ..+.|+|++|+|.|.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666655544 689999999999998887 57789999998877666554432 23468999999999999999999
Q ss_pred CcEEEEECC
Q 002264 651 NGFKILANA 659 (945)
Q Consensus 651 g~i~iw~~~ 659 (945)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999873
No 128
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=211.78 Aligned_cols=488 Identities=14% Similarity=0.141 Sum_probs=308.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC---C
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG---N 419 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g---~ 419 (945)
-...-..-.||+|++++++. .+.+|.||...+|.++. .+.+|..++.++.+.|.. .
T Consensus 15 ~n~~~~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~ 73 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENAN 73 (792)
T ss_pred ccceecccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccce
Confidence 33344556799999974443 36899999999998873 488999999999998854 4
Q ss_pred EEEEEECCCcEEEEEccCCccccccee-eccc-------ccc--------------------------------------
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQ-IDAH-------VGA-------------------------------------- 453 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~-~~~h-------~~~-------------------------------------- 453 (945)
++.+++.||.|++||...++.++.+.. +.-| ...
T Consensus 74 ~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 74 YLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred EEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccc
Confidence 778999999999999988765542210 0000 000
Q ss_pred ---------EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE-EE---ecCCCCCEEEEEeeecCCccEEEEEEcCCe
Q 002264 454 ---------VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FN---FEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (945)
Q Consensus 454 ---------v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~-~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (945)
-.++.+++.|. +...-.+..+.+|+ ..+... .. -..|...+++.+++| ++++++++..||+
T Consensus 154 ~d~~~~~~~~~~I~~~~~ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGr 228 (792)
T KOG1963|consen 154 GDFLKEHQEPKSIVDNNSGE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGR 228 (792)
T ss_pred hhhhhhhcCCccEEEcCCce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCc
Confidence 11222333332 11122244555666 332211 00 123666688889888 5589999999999
Q ss_pred EEEEEccC----CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 520 IKAWLYDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 520 i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
|.+|.--. ......+..|...|++++|+++|.+|++||. ++.+.+|.+.+++ .+-++.- +.++..+.++|
T Consensus 229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~----E~VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ 302 (792)
T KOG1963|consen 229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR----EGVLVLWQLETGK-KQFLPRL-GSPILHIVVSP 302 (792)
T ss_pred EEEEeccccccccccceEEEecccccceeEEecCCceEeeccc----ceEEEEEeecCCC-ccccccc-CCeeEEEEEcC
Confidence 99995222 1223356667789999999999999999996 9999999999988 3333333 34789999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeEEEeecCCC---------CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 596 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
|+...+...+|+.|.+..+.+......+.+... .+-.+.++++|.-+.++..+..|.|.+||+.+.... .
T Consensus 303 ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~ 381 (792)
T KOG1963|consen 303 DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-Y 381 (792)
T ss_pred CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-e
Confidence 999999999999999998877655544433211 123567899997788888999999999999876433 2
Q ss_pred cccCC-----ccc-cccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcc
Q 002264 667 AVENP-----PFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (945)
Q Consensus 667 ~~~~~-----~~~-~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 740 (945)
.+.-- ... ...-.+..++.+..|..+++..... ...-.....-.+++
T Consensus 382 ~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~---------------------------d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 382 KLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI---------------------------DKFNFFDGEVSLKF 434 (792)
T ss_pred eEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee---------------------------hhhhccCceEEEEE
Confidence 22111 111 1223456666677777765422110 00011111245678
Q ss_pred cccceeecCCcceee-ecCCCCCCccceEEEEEecC-CC-eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCC
Q 002264 741 WQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYTNS-AV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (945)
Q Consensus 741 w~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d-g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (945)
|........-.+... ..| |...+...++.+. .. ..++++.||.+++|-+...+-.. ...+
T Consensus 435 W~~n~~~kt~~L~T~I~~P----H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~-------------k~~s 497 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNP----HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY-------------KKSS 497 (792)
T ss_pred EEEcCCcceeEEEEEEecC----CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC-------------cCcc
Confidence 876643332222222 222 6666666665543 33 78999999999999885433111 1111
Q ss_pred cccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCc-eEEEEecCCCCCeeEEEeecC-CCceEEEeecCc
Q 002264 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDS 895 (945)
Q Consensus 818 ~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~-~~~~lasg~~dg 895 (945)
+.... ..+.-|..++++++||.||..||++.+++|.+||..+. +...+...-..++..+.|... .....++....+
T Consensus 498 ~W~c~--~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (792)
T KOG1963|consen 498 NWTCK--AIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQ 575 (792)
T ss_pred ceEEe--eeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCc
Confidence 11100 11112688999999999999999999999999999883 333333222233444433220 011233445577
Q ss_pred eEEEEecccceEEE
Q 002264 896 TIHIYNVRVDEVKS 909 (945)
Q Consensus 896 ~v~vwd~~~~~~~~ 909 (945)
.+.+|++-+..+..
T Consensus 576 ~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 576 RLSVWNLLSMSLIW 589 (792)
T ss_pred eEehHhhhhhheec
Confidence 89999998776554
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.7e-23 Score=191.30 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=201.2
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g 418 (945)
..|++-|-.+...--|++ |||++.|++|+|+.+....... ....+.||+++|..++|-. -|
T Consensus 8 t~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccC
Confidence 358888999999999995 9999999999999998765421 1244899999999999976 79
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCc--eEEEecCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR--KLFNFEGHE 494 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~--~~~~~~~~~ 494 (945)
.+||+++.||.|.||.-.+| ..........|...|++++|.|.+.-+.|++++.||.|.|.+ .+|. .......|.
T Consensus 71 ~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999999999998887 444444667899999999999998777999999999999998 3322 224456799
Q ss_pred CCEEEEEeeecCC-c-----------cEEEEEEcCCeEEEEEccCCCee--EEecCCCCeEEEEEEcCCC----CEEEEE
Q 002264 495 APVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADG----SRLFSC 556 (945)
Q Consensus 495 ~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~----~~l~~~ 556 (945)
-.|++++|.|..- | +.|++|+.|..|+||+.+...-. ..+..|...|+.++|.|.- .+++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999999987521 1 56999999999999998876322 3477889999999999964 467787
Q ss_pred eecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 557 GTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+. |+++.||-.... ....++.......+..+.|+..|+.|++++.|+.|.+|.-+
T Consensus 230 Sq----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 230 SQ----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cC----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 74 999999986521 11122222122378899999999999999999999999754
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.9e-23 Score=208.17 Aligned_cols=283 Identities=13% Similarity=0.139 Sum_probs=228.7
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC---ceeeEeccc-cCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 535 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
-.|+.-|..++++...+++++++ .+.|++||+... .++..+... .+..++++.+.|||+.|++|++-.++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 34677888999999999999997 889999998753 234444433 334688899999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
|||+....+....+.......+.+++.+||.+..+++..||.|.|||+.+. ..++.+++|+.. ..|+.+++||.
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDG-----ascIdis~dGt 564 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDG-----ASCIDISKDGT 564 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCC-----ceeEEecCCCc
Confidence 999987655444444343346789999999999999999999999999877 788999998875 66788888887
Q ss_pred ceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEE
Q 002264 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (945)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 770 (945)
.| .+|+-|++++-||+.......+ . ...+.|.++
T Consensus 565 kl-------------------------------------WTGGlDntvRcWDlregrqlqq---h------dF~SQIfSL 598 (705)
T KOG0639|consen 565 KL-------------------------------------WTGGLDNTVRCWDLREGRQLQQ---H------DFSSQIFSL 598 (705)
T ss_pred ee-------------------------------------ecCCCccceeehhhhhhhhhhh---h------hhhhhheec
Confidence 66 6899999999999986433222 1 256789999
Q ss_pred EEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC
Q 002264 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (945)
Q Consensus 771 ~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s 850 (945)
..+|.+.+++.+-.++.+.|-..... +... +.. |..-|.++.|++-|+++++.+
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp----------------------~kyq--lhl--heScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKP----------------------EKYQ--LHL--HESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCc----------------------ccee--ecc--cccEEEEEEecccCceeeecC
Confidence 99999999999999998877643211 1111 222 889999999999999999999
Q ss_pred -CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEec
Q 002264 851 -GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 851 -d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~ 902 (945)
|+-+..|.+.-|..+...+ ....|+++.+|. |+++|++|+.|+...||.+
T Consensus 653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 8889999999888887776 577899999999 8999999999998888875
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3e-22 Score=187.87 Aligned_cols=300 Identities=14% Similarity=0.210 Sum_probs=228.0
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~ 420 (945)
.|.+.|+++.+.+...+++++|+.||.|.+||++.........+.. -..|. .....-.+|.-.|.++.|-| |.-+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeee--ccccCCccceeeeeeeEEeeecCce
Confidence 4889999999999644469999999999999998654322111100 00111 11223568999999999999 6668
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCC-eeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+.+++.|.+++|||..+-+... .+ .-.+.|++-+++|-.. .-++++|..|-.|++.| .+|..-+.+.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8889999999999999876543 22 3567788889988543 22678888899999999 99999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEe--------------cCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDY--------------DAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999854 78899999999999999764 222222 335568999999999999999987 8
Q ss_pred ceEEEEeCCCCceeeEecc---ccC---cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 564 SFLVEWNESEGTIKRTYAG---FRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
..+++|+...|+....-.+ ++. ..+. +. +.+...++.--.++.+.++++-.++.+..+..|. ..|.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEee
Confidence 8999999988753221111 111 0111 22 3334455555567999999999999999998884 38999999
Q ss_pred cCCCCEEEEEECCCcEEEEEC
Q 002264 638 SKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.|+-+...+|..|+.|..|-+
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999977
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5.3e-23 Score=205.61 Aligned_cols=252 Identities=16% Similarity=0.235 Sum_probs=202.4
Q ss_pred ccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCccc-------ccceeeccccccEEEEEEecCCCeeEEEEEeC
Q 002264 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL-------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~ 473 (945)
..-|.+.|+.+...|. ...+|+++..+.|.|||...-... +....+.+|...-++++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 556777888999999998643221 222368899998899999998776 8999999
Q ss_pred CCcEEEEeCC--Cc------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc--CCCeeEEecCCCCeEEE
Q 002264 474 DKLIKVWELS--GR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 474 d~~i~vwd~~--~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 543 (945)
|++|++||.+ +. +...+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999922 22 3467889999999999999854 789999999999999999 55556677888999999
Q ss_pred EEEcCCCCEE-EEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe--
Q 002264 544 MLYSADGSRL-FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-- 618 (945)
Q Consensus 544 ~~~s~~~~~l-~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 618 (945)
++|+|-+..+ ++++. |++|.+||+++. +++.++.+|.. .+..+.|+|.. ..|++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999966554 55554 999999999975 56788889887 89999999975 567778899999999987522
Q ss_pred ----------eEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcEEEEECCC
Q 002264 619 ----------ILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAI 660 (945)
Q Consensus 619 ----------~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~~ 660 (945)
+...+...+|...|..+.|+|+.. .|++.++|+.+.||.+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 122344456777999999999654 677888999999999864
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-22 Score=214.22 Aligned_cols=277 Identities=16% Similarity=0.200 Sum_probs=223.2
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.|...-+.++|.|+|. ++++++.||.|++|+........ ..+.-+...|.+++.. +.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~~--s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIACY--SNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEeec--ccce
Confidence 5778899999999999 58888999999999976652211 1122377788888764 5599
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
++|+.+++|.+|.+.+++.-. .+...+-++.+++|+-+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876543 3445677899999999999 899999999999999 8888889999999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.++| ++.+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9987 5689999999999999999987766554331 335778999999777777665 8999999999
Q ss_pred CCceeeEeccccCcc-eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 573 EGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
+++....+....... +..+.|+|.|.+|++++.||.|.|||.++... |.....|++++|.|+++-+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 999888887554433 88899999999999999999999999988222 33334799999999887665555444
Q ss_pred cEEEE
Q 002264 652 GFKIL 656 (945)
Q Consensus 652 ~i~iw 656 (945)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 44443
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.6e-22 Score=200.02 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=223.7
Q ss_pred CCCcEEEEEEeCCCC-eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCE
Q 002264 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~ 420 (945)
|.++|++++|+|... .++|+|...|+|-+||+.+.+.... ....+..|+.+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 788999999999876 7899999999999999964433221 1134788999999999999 5568
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~ 498 (945)
+.+.+.||+|++-|++++.. ..+..+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999987632 22223434566788899998888 667777777999999 55566777888999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCee----EEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-- 572 (945)
+++++|... .++++++.|++.+|||++.-... .....|...|.+..|||++-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999854 79999999999999999864433 344567779999999999888888875 9999999984
Q ss_pred --CCceeeEeccccCc----ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE-EEEcCCCC-EE
Q 002264 573 --EGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGN-LL 644 (945)
Q Consensus 573 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp~g~-~l 644 (945)
.-.+..++...... ......|.|+.+++++|..-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 22333333221110 1233679999999999998889999999999988876554432 3443 58999777 44
Q ss_pred EEEECCCcEEEEECC
Q 002264 645 AVTTADNGFKILANA 659 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~ 659 (945)
+.++..|.|+||.-+
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 445557889988654
No 135
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1e-21 Score=203.47 Aligned_cols=273 Identities=13% Similarity=0.174 Sum_probs=202.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|..++|-|||..+++.+ +..+.|||...|..+. .+++|.+.|+|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 799999999999866554 5789999999998873 3889999999999999999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeec
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (945)
.|..|.+|+-+-...++ + .|...|.|+.|+|-.+ .++|++-. ..-+|....+.+.. |...+.+++.++.
T Consensus 73 aDK~VI~W~~klEG~Lk----Y-SH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK----Y-SHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWT 141 (1081)
T ss_pred CceeEEEecccccceee----e-ccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh---hhhheeEEEeeec
Confidence 99999999865433232 2 5999999999999988 78888743 45688844433332 3343444444446
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEecC---CCCeEEEEEEcCCCC-----EEEEEeecCCCCceEEEEeCCCCcee
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~-----~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.||++++.|-.+|+|.+-+- ++++...+.. ...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 68999999999999998863 3444444443 456899999999643 3333332 3445555443 3333
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..-..-. ....|+.+-++|.+++.||.|+.+.+|.. .|-.+.++....+ .|+.++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L~-FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALN-FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCC-CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 2222111 13567889999999999999999999975 4555666654444 899999999999999999999999998
Q ss_pred CCC
Q 002264 658 NAI 660 (945)
Q Consensus 658 ~~~ 660 (945)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 854
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.5e-22 Score=199.14 Aligned_cols=288 Identities=14% Similarity=0.184 Sum_probs=224.4
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc---eEEEecCCCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEc
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY 525 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~ 525 (945)
-.+.|+++.|+|... ++++++.|+++++|-.+|+ .++.+.-...+|.+.+|.|. |. .+++++.-..++.||+
T Consensus 212 s~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CcCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeec
Confidence 346799999999998 8999999999999985554 46666666789999999884 45 8999999999999999
Q ss_pred cCCCeeEEecC---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEE
Q 002264 526 DTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA 602 (945)
Q Consensus 526 ~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 602 (945)
.+.+....-.. ....+....+++++++|+..|. .|.|.+....+++.+..+.-.. .+..++|+.+++.|++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEE
Confidence 87665442221 2235778889999999999985 8999999999999998887542 6889999999999999
Q ss_pred EECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc-----cccccccCCcccccc
Q 002264 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-----RSLRAVENPPFEALR 677 (945)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~ 677 (945)
++.+|.|++||++...++..+...+.. .-++++.+++|.+||+|+..|.|.|||.++.. +.++.+. -..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-----NLt 435 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-----NLT 435 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-----hhh
Confidence 999999999999999999988766543 33678888999999999999999999976532 2222222 233
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
..|.++.|++|++.|+- ++...+..+++..+.+...-. .+
T Consensus 436 t~Itsl~Fn~d~qiLAi-----------------------------------aS~~~knalrLVHvPS~TVFs-----Nf 475 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAI-----------------------------------ASRVKKNALRLVHVPSCTVFS-----NF 475 (514)
T ss_pred eeeeeeeeCcchhhhhh-----------------------------------hhhccccceEEEeccceeeec-----cC
Confidence 56889999999988752 233334666666665422211 23
Q ss_pred CCCCCCccceEEEEEecCCCeEEEeeecCeEEEEee
Q 002264 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~ 793 (945)
|.....-+.|+|++|||.|.+++.+..+|.+.+|.+
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 333345678999999999999999999999999975
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-22 Score=190.82 Aligned_cols=268 Identities=13% Similarity=0.211 Sum_probs=202.5
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~ 487 (945)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|++|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976544 6889999999999999999 899999999999999 999999
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC----eEEEEEEcCCCCEEEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----WCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+.++ ..++|+.+.|+|......+++- .+..-.+-++..+.....-..... ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 7889999999998765544443 343344455444222221111111 2233468899999999986 9
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC-------eeE--EEeecCCCCCCccE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------NIL--TSTDAEGGLPNLPR 634 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 634 (945)
|.+.++|..+.+++..++-.....+..+.++..|..|+.-+.|..|+.|+...- ++. ..+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998887665447888999999999999999999999998631 111 11111011123468
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 635 v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
++|+.+|.+++.++. ...++||....| .+++.+.|..... .-.+.|.|-...+
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~----l~DV~whp~rp~i 308 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEE----LLDVNWHPVRPII 308 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhh----eeecccccceeee
Confidence 899999999988875 467999999888 7888887765332 3345666655444
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=7.7e-21 Score=203.11 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=209.3
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~ 588 (945)
..+++++.|+.+++||+.+++....+..+. .+.+++|+|+++.+++++. .++.|++||..+++....+..+.. .
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~--~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGPD--P 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCCC--c
Confidence 478899999999999999888777776544 3678999999998755442 378999999999988777765433 4
Q ss_pred EEEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC-cEEEEECCCCccccc
Q 002264 589 GVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLR 666 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg-~i~iw~~~~~~~~~~ 666 (945)
..++++|+++.++++ +.++.|++||+.+++.+..+.... .+.+++|+|+|+++++++.++ .+.+|+..++.. ..
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EE
Confidence 568899999987665 468999999999988877765322 468899999999999988765 466677754411 10
Q ss_pred cccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccccee
Q 002264 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (945)
Q Consensus 667 ~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 746 (945)
..
T Consensus 152 ~~------------------------------------------------------------------------------ 153 (300)
T TIGR03866 152 NV------------------------------------------------------------------------------ 153 (300)
T ss_pred EE------------------------------------------------------------------------------
Confidence 00
Q ss_pred ecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccc
Q 002264 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (945)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (945)
. ....+..++|+|+|+.+++++ .++.+++||+.... .... ++..... .
T Consensus 154 ---------~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~------~~~~-----~~~~~~~-----~ 202 (300)
T TIGR03866 154 ---------L------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK------VIKK-----ITFEIPG-----V 202 (300)
T ss_pred ---------E------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce------eeee-----eeecccc-----c
Confidence 0 011234578888988876554 48889999865321 1110 0000000 0
Q ss_pred cCCCcCCceeEEeecCCCceEEec--CCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe-ecCceEEEEec
Q 002264 826 AGVNLEEAVPCIALSKNDSYVMSA--TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNV 902 (945)
Q Consensus 826 ~~~~~~~~i~~l~~s~dg~~la~~--sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg-~~dg~v~vwd~ 902 (945)
.. .......++|+||+++++++ +++.+.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.|||+
T Consensus 203 ~~--~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 203 HP--EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cc--ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 00 11224568899999975544 36789999999988876654 445799999999 88888776 56899999999
Q ss_pred ccceEEEEecCCCcceeEEEecC
Q 002264 903 RVDEVKSKLKGHQKRITGLAFST 925 (945)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~ 925 (945)
.+++++.++... ...++++|+|
T Consensus 279 ~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 279 AALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEEcc-cccceeEeCC
Confidence 999999999855 5568888875
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.6e-22 Score=213.22 Aligned_cols=267 Identities=13% Similarity=0.185 Sum_probs=223.2
Q ss_pred cCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..|....+.|+|.|+|.+|.+++.||.|++|+.... +... ++..+...|.+++-. +. +|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 468899999999999999999999999999998765 3333 343477788888775 44 799999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.++..-..+....-++.+++|+. +|.+++.||.|-.|++-++........+.+|..+|.++.|+|.+.+|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 66665545555667899999865 6789999999999999999999999999999999999999999999999886
Q ss_pred CCCceEEEEeCCCCceeeEecccc-------CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFR-------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
+|.|++||+.++.+..++.+-. ...+..++|+|++..+++.+.|+.|.+|+..+.+....+....+...+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 9999999999998777665432 2245668999999999999999999999999999998887766665699
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
.++|+|+|++||+++-||.|.|||.++-.+ | .....|.+++|.|++..+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~---~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER-------H---EFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh-------c---cccceeEEEecCCCCCee
Confidence 999999999999999999999999986311 1 122357888888887654
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=4.9e-21 Score=204.64 Aligned_cols=274 Identities=12% Similarity=0.098 Sum_probs=200.4
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE-EEEECCCcEEEEEccC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAG 437 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~~ 437 (945)
++++++.|+.|++||..+++.+. .+.++. .+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~-------------------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTR-------------------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEE-------------------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 68899999999999998877542 133343 46789999999976 5667789999999998
Q ss_pred CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc
Q 002264 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (945)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 516 (945)
++... .+..+. .+..++|+|+++. ++++++.|+.+++|| .+++.+..+.. ...+.+++|+| ++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 86554 343333 3567899999984 345566789999999 66666666653 33467788876 6678888877
Q ss_pred CC-eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceE
Q 002264 517 DG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNG 589 (945)
Q Consensus 517 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~ 589 (945)
++ .+..||..+......... ......++|+|+++.+++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655444332 234577899999998876542 378899999999887766542211 1134
Q ss_pred EEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE-ECCCcEEEEECCCCcccccc
Q 002264 590 VVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 590 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~-~~dg~i~iw~~~~~~~~~~~ 667 (945)
.++|+|+++.++++ +.++.+.+||+.+++.+..+.. ++ .+.+++|+|+|++|+++ +.+|.|++||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 57899999986654 4577899999999887765542 22 68899999999999886 45899999999987 44333
Q ss_pred c
Q 002264 668 V 668 (945)
Q Consensus 668 ~ 668 (945)
+
T Consensus 287 ~ 287 (300)
T TIGR03866 287 I 287 (300)
T ss_pred E
Confidence 3
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.2e-22 Score=203.24 Aligned_cols=280 Identities=14% Similarity=0.220 Sum_probs=211.8
Q ss_pred cCCCCCcceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc
Q 002264 329 SLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (945)
Q Consensus 329 ~~~~~~~~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (945)
++...|..+...+ +|++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.... -.+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecc
Confidence 3445555555554 5999999999999999 59999999999999999999885311 234
Q ss_pred cEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE----eCCCcEEEEe
Q 002264 408 SVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~----s~d~~i~vwd 481 (945)
.|.||+|+|.++ .||++-.+ .+.|.+..-|..+.... ... .|+++ ..|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~----------------t~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGP----------------TKE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcc----------------hhh--hhhcCCCccCCcccceeec
Confidence 899999999765 45555443 46676655553322100 001 12222 2356777887
Q ss_pred -CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 482 -LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 482 -~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
... .-++....|...|..+.|+. .|.+|++...+ ..|.|+++........+....+.+.++.|+|...++
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 311 11344556889999999987 55799887664 568899988777776676777889999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCc
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNL 632 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v 632 (945)
++++ ...|++||+..+++++++..... .+..++++|.|..|++|+.|+.+..||+.-. ++.+.+..|.. .+
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--av 653 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AV 653 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hh
Confidence 9987 67899999999888877766554 7889999999999999999999999999754 46666666654 79
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++|+|++.-.++++|+.||++.|+..
T Consensus 654 r~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 654 RSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhccccceeeeecCCCcEEEEee
Confidence 99999999999999999999999864
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.1e-23 Score=220.82 Aligned_cols=253 Identities=17% Similarity=0.337 Sum_probs=223.1
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~ 438 (945)
+++.+..+-.+++||.+. +..|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-------------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp 60 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-------------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP 60 (825)
T ss_pred ccceeeeeeccccccchh-------------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC
Confidence 355555566777777643 4458899999998778999999999999999998665
Q ss_pred cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC
Q 002264 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (945)
Q Consensus 439 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 517 (945)
..+. .+.+|..+|.++.|+++.. ++++|+.+|+|++|| ..++.++++.+|...+.++.|+|. +.+.++|+.|
T Consensus 61 ~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStd 133 (825)
T KOG0267|consen 61 NAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTD 133 (825)
T ss_pred chhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEecccccc
Confidence 4444 5789999999999999988 899999999999999 899999999999999999999885 4789999999
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
+.+++||++..++...+..|...+..+.|+|+|++++.++. |..+++||...|+....|..|.. .+..+.|+|..
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e 208 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLE 208 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeecccccccccccccccc-cccccccCchh
Confidence 99999999999999999998889999999999999999985 79999999999999999999887 78889999998
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|++..+++|...
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 88999999999999999998888777655 4489999999999999888654
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=200.83 Aligned_cols=288 Identities=16% Similarity=0.197 Sum_probs=209.8
Q ss_pred EEEeC--CCCeEEEEEeCcCcEEEEEcCCCCcc-cccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC
Q 002264 350 MDFHP--SHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (945)
Q Consensus 350 v~fsp--~g~~llasgs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~ 426 (945)
+.|++ +.+.+||.+..||.|.++|.....-. ....+ .....|.+.|..++|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccC
Confidence 44543 45568999999999999998654322 11111 235679999999999997778999999
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCce------------------
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK------------------ 486 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~------------------ 486 (945)
|.++++||++++...... .+.+|.+.|.+++|.|++.. .|++|+.||.|.||| .++..
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998776533 46799999999999999887 899999999999999 33300
Q ss_pred --------EEEecCCCCCEEE----EEeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEe--------cCC---CCeEE
Q 002264 487 --------LFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDY--------DAP---GHWCT 542 (945)
Q Consensus 487 --------~~~~~~~~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~i~ 542 (945)
+.....+...|.+ +.| . |...|++++. |+.|++||++........ ..+ ...+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 1111233333433 333 2 5578888887 999999999876544321 222 23677
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceE-EEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
++.....|.+|++.+. |+.|++|++.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888898887775 999999999864 344455554432222 235789999999999999999999988654
Q ss_pred EE-EeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCc
Q 002264 620 LT-STDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 620 ~~-~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
-. .+.+ |...|++++|.| .-.-++++++|.++++|++..+.
T Consensus 352 ~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 352 PPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 33 3333 344899999998 33456677999999999997663
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=201.38 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=209.6
Q ss_pred EEEEcC---CCCEEEEEECCCcEEEEEccCCccc---ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 411 RVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 411 ~i~~s~---~g~~las~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
+..|++ ....||.+.+||.|.++|......- +.+.....|...|.++.|.| |+. .|++++.|.++++|| ..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 356665 3457899999999999998753221 12235668999999999999 554 899999999999999 77
Q ss_pred CceEEE--ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---------------------------EEe
Q 002264 484 GRKLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---------------------------VDY 534 (945)
Q Consensus 484 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~ 534 (945)
++++.. +.+|...|.++||.+. |...+++|+.||.|.|||++-.... ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 777655 8899999999999987 4578999999999999998643200 011
Q ss_pred cCCCCeEEE---EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee--------EeccccC--cceEEEEEcCCCCEEE
Q 002264 535 DAPGHWCTT---MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR--------TYAGFRK--KSNGVVQFDTTQNHFL 601 (945)
Q Consensus 535 ~~~~~~i~~---~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~l~ 601 (945)
..+...|.+ +.+..|...|++++. .|+.|++||++...... .+..+.. ..+.++..+..|.+++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 112234444 556689999999886 59999999998754322 2222211 1255566777789999
Q ss_pred EEECCCcEEEEECCCCe--eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCc
Q 002264 602 AVGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (945)
+.+.|+.|++|++.+.. ++..+.++-....-..-..+||+.++++|+.|+...+|.+.+.......+.+|...
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e----- 362 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE----- 362 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-----
Confidence 99999999999998643 33333322211112233568999999999999999999999887777777777765
Q ss_pred ceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 680 i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
|.+++|.|... .-+++++.|.++++|++..
T Consensus 363 Vt~V~w~pS~~------------------------------------t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 363 VTTVRWLPSAT------------------------------------TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred EEEEeeccccC------------------------------------CCceeeccCcceEEEeccC
Confidence 67787766522 1236778899999999864
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.2e-21 Score=198.01 Aligned_cols=237 Identities=9% Similarity=0.162 Sum_probs=177.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.++.||++.|.||+..|.|.+||+|+.||+|+||.+.+|.+++... ..+.|.|++|+|.+..-+|+.+- +..+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 4688999999999999999999999999999999999999987442 44579999999998864444444 444666
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEE----EcCCeEEEEEccCC----CeeEEecCCCCeEEEEEEcCCC
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
-+ .-|..+..-.. . ..|+++ ..++.+..|.-... ..+.....+...|..+.|+..|
T Consensus 469 vnp~~G~~~e~~~t--~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT--K-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eCccccchhhhcch--h-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 66 54432211100 0 111111 23456777854321 1223445577789999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
.||++...+ ++...|.|+++...+...-|....+ .+.++.|+|...+|++++. ..|++||+....+++.+.... .
T Consensus 534 DYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~--k 608 (733)
T KOG0650|consen 534 DYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS--K 608 (733)
T ss_pred ceEEEeccC-CCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC--e
Confidence 999988753 3467899999988777666655444 7888999999988888875 579999999887777665433 3
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|..++.+|.|..|+.|+.|+.+..+|+.-+
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 7899999999999999999999999999755
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.2e-20 Score=177.17 Aligned_cols=295 Identities=15% Similarity=0.212 Sum_probs=211.7
Q ss_pred cCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCc------ee-e--------EeccccCcceEEEEEcC-CC
Q 002264 535 DAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGT------IK-R--------TYAGFRKKSNGVVQFDT-TQ 597 (945)
Q Consensus 535 ~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~------~~-~--------~~~~~~~~~~~~~~~~~-~~ 597 (945)
..|++.|+++.+.+ .|+++++++. |+.|.+||++... .+ + .-.+|. ..|..+.|-| |.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGga----dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk-y~iss~~WyP~Dt 114 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGA----DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK-YAISSAIWYPIDT 114 (397)
T ss_pred ccCCCccceeeeccccceEEeecCC----CccEEEEEeccccchhhccceeheeeeccccCCccce-eeeeeeEEeeecC
Confidence 45778899998887 6889999987 9999999997543 00 0 011222 2466666666 55
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccccCCccc
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFE 674 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 674 (945)
..+.+++.|.++++||.++.+....+..++ .|.+-+++| ...++|+|..|-.|++.|+.+| ....++
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~---~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~L------ 184 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEG---KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTL------ 184 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCc---eeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeee------
Confidence 678888899999999999998888887654 688888888 3457888999999999999887 222211
Q ss_pred cccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCccee
Q 002264 675 ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL 754 (945)
Q Consensus 675 ~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 754 (945)
T Consensus 185 -------------------------------------------------------------------------------- 184 (397)
T KOG4283|consen 185 -------------------------------------------------------------------------------- 184 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCccceEEEEEecCCCeE-EEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCc
Q 002264 755 VTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (945)
Q Consensus 755 ~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 833 (945)
. +|...|.++.|+|...++ ++++.||.|++||+.... | ...+.|..+++.....-....|.+.
T Consensus 185 ---s---GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----g------cf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 185 ---S---GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----G------CFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred ---c---cccCceEEEEeccCceeEEEecCCCceEEEEEeeccc----c------eeEEeecccCccCccccccccccce
Confidence 1 277788888888877765 455668888888875431 1 1122233332211111122348999
Q ss_pred eeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC---CCCC----eeEEEeecCCCceEEEeecCceEEEEecccc
Q 002264 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPA----STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (945)
Q Consensus 834 i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~----i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~ 905 (945)
+..+||+.||.++++.+ |+++++|+..+|+....-.+ |... +. +. +. +...++---.++.+.++++-+|
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sg 325 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEG 325 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCc
Confidence 99999999999999998 99999999987754221111 2111 11 22 33 3334444445689999999999
Q ss_pred eEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
..+..+..|-..|.+.++.|+-+.+.++..|+.|..|-
T Consensus 326 s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 326 SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 99999999999999999999999999999999999884
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.7e-20 Score=177.70 Aligned_cols=254 Identities=11% Similarity=0.149 Sum_probs=191.8
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~ 478 (945)
-.+|.+-|.++.|.+-|+.+|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5679999999999999999999999999999996543 334444567889999999999764 66 999999999999
Q ss_pred EEeC-CC---------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE------ec-------
Q 002264 479 VWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD------YD------- 535 (945)
Q Consensus 479 vwd~-~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~------- 535 (945)
||.. .. ....++....+.|++++|.|..-|-.+++++.||.+|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9983 11 1235566778899999999999899999999999999998654332221 11
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEeec-CCCCceEEEEeCCCC----ceeeEeccccCcceEEEEEcCCC----CEEEEE
Q 002264 536 APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAV 603 (945)
Q Consensus 536 ~~~~~i~~~~~s~~---~~~l~~~~~~-~d~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~ 603 (945)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+ ..+.++.++.. .|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23346788999873 3456666531 111246777775443 24456677776 89999999963 578889
Q ss_pred ECCCcEEEEECCCCe-----------------eEEEe-ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 604 GEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+.|| |+||.+.... .+..+ ...+|.+.|..+.|+-.|..|++.|+||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 11222 233556699999999999999999999999999764
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.2e-22 Score=210.85 Aligned_cols=247 Identities=13% Similarity=0.209 Sum_probs=195.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las~ 424 (945)
.+..|+|+....++|||++..|.|.+||+....... ....+..|+..|+++.|++. ..+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk----------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK----------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccch----------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 456678886555689999999999999997621110 11357889999999999994 6789999
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEe
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~ 502 (945)
+.||+|++||++..+... ++.+....|.+++|+|...+ .|+++...|.+.+|| ...++...+..|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876555 66778889999999997655 899999999999999 556677889999999999999
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEE-EEEeecCCCCceEEEEeCCCCc-eeeE
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGT-IKRT 579 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l-~~~~~~~d~~~~i~iwd~~~~~-~~~~ 579 (945)
+| ++.+|++||.|++|+|||+.+......... ...++.++.|-|+..+. ++++. -.+..|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 99 668999999999999999986555443333 34589999999987754 44443 247889999998764 4567
Q ss_pred eccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCC
Q 002264 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
+..|.. .++.++|.. +...+.+++.||.|..-..+++
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777776 788899865 4567888999998876554443
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2e-21 Score=205.88 Aligned_cols=296 Identities=12% Similarity=0.151 Sum_probs=223.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~la 422 (945)
+....++...++-..+++ ++ ...+.||.+....... ++.+.. ..-..-...+..|+|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~-AG-rs~lklyai~~~~~~~--~~~~~~----------k~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVV-AG-RSLLKLYAINPNDFSE--KCNHRF----------KTKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEE-ec-ccceeeEeeCcccCCc--ceeeec----------ccccceeeehhhcccccchhhhhe
Confidence 446778888888876444 44 4577888775533221 111100 00000112455688886 578999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~ 501 (945)
+++..|.|.+||+.....-+....+..|...+.++.|++...+ +|+|||.||+|++|| ...+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999863222333367889999999999998877 899999999999999 77778888888899999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99985 5899999999999999998754 45678899999999999999999999996 999999999987766555
Q ss_pred ccccCcceEEEEEcCCCC-EEEEEE--CCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEE
Q 002264 581 AGFRKKSNGVVQFDTTQN-HFLAVG--EDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~i 655 (945)
.-+...++..+.|-|... +|++++ .|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 555566899999999765 455555 6889999999764 344555544 44789999976 5667888899988765
Q ss_pred EECCCC
Q 002264 656 LANAIG 661 (945)
Q Consensus 656 w~~~~~ 661 (945)
-..+++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 554443
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=5.2e-20 Score=189.88 Aligned_cols=242 Identities=12% Similarity=0.163 Sum_probs=156.2
Q ss_pred CCCEEEE--EECCCcEEEEECCCC-ee-EEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccc-ccc
Q 002264 596 TQNHFLA--VGEDSQIKFWDMDNV-NI-LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLR-AVE 669 (945)
Q Consensus 596 ~~~~l~~--~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~ 669 (945)
+...+++ .+..|.|-||+++.. ++ -..+..-.....|+.+.|.| |...||++++||.|++|.+..+.-... ...
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 3444444 556899999998752 21 11222212233789999999 888999999999999999976521111 111
Q ss_pred CCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC
Q 002264 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (945)
Q Consensus 670 ~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 749 (945)
......+...|.++.|.|-.. ..+++++.|-+|++||+......
T Consensus 670 e~~lt~h~eKI~slRfHPLAa------------------------------------dvLa~asyd~Ti~lWDl~~~~~~ 713 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAA------------------------------------DVLAVASYDSTIELWDLANAKLY 713 (1012)
T ss_pred ceeeecccceEEEEEecchhh------------------------------------hHhhhhhccceeeeeehhhhhhh
Confidence 112233445688888887532 34588999999999999864433
Q ss_pred CcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 750 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
. .+.+ |.+.|.+++|||||+.+++.+.||++++|+-...+.. ++...+ .
T Consensus 714 ~-----~l~g---HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p------------v~Eg~g-------p---- 762 (1012)
T KOG1445|consen 714 S-----RLVG---HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP------------VYEGKG-------P---- 762 (1012)
T ss_pred h-----eecc---CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc------------cccCCC-------C----
Confidence 2 2333 9999999999999999999999999999964332210 111000 0
Q ss_pred cCCceeEEeecCCCceEEecC-C----CeEEEEeccCce--EEEEecCC-CCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-G----GKISLFNMMTFK--VMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d----~~i~iwd~~~~~--~~~~~~~h-~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
...+-..+.|.-||+++++.+ | ..|.+||..+.. .+.+..-. ...+.--.+.+|.+-++++|-.|..|++|.
T Consensus 763 vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 763 VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 112233456667999888776 4 348999977532 33332211 112333345565677888999999999999
Q ss_pred ccc
Q 002264 902 VRV 904 (945)
Q Consensus 902 ~~~ 904 (945)
+-.
T Consensus 843 v~~ 845 (1012)
T KOG1445|consen 843 VIY 845 (1012)
T ss_pred ecC
Confidence 753
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=3.1e-20 Score=182.66 Aligned_cols=308 Identities=16% Similarity=0.211 Sum_probs=219.0
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+...+|..+.|.+++...+|||+.|..|+||.+..+..-.. .. ...-...+..|...|+++.|+|+
T Consensus 7 ei~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-~~---------~V~y~s~Ls~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 7 EISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-DM---------KVEYLSSLSRHTRAVNVVRFSPD 76 (434)
T ss_pred EEEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-ce---------eEEEeecccCCcceeEEEEEcCC
Confidence 444555669999999998875699999999999999876543221 00 00112458899999999999999
Q ss_pred CCEEEEEECCCcEEEEEcc--------C-----CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 418 GNYVGVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
|..||+|+.+|.|.+|... + .+.....+.+.+|...|..++|+|++. ++++++-|.++++|| ..
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEecc
Confidence 9999999999999999876 2 111223346778999999999999999 899999999999999 99
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------------------CCC----Ce
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APG----HW 540 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~ 540 (945)
|..+..+.+|...+..++|.|- ++++++-+.|...+.+.+...+...... .|. ..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ceeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 9999999999999999999774 4889999988876666654433222111 011 13
Q ss_pred EEEEEEcCCCCEEEEEeecCCC-----CceEEEEeCCC-CceeeEeccccCcceEEEEEcCC-----------------C
Q 002264 541 CTTMLYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-----------------Q 597 (945)
Q Consensus 541 i~~~~~s~~~~~l~~~~~~~d~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 597 (945)
...++|+|||..+++....-+- -+..++++-.. .++...+.+... ....+.++|- -
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEecccccccccccccc
Confidence 4567899999998875421000 12334444332 223333443333 2222333320 1
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+++....+.|++||..+..++..... -|...|+.++|++||..++..+.||...+...+..
T Consensus 312 rlvfaiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 312 RLVFAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ceEEEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 2334444556899999999888877654 24558999999999999999999998888777654
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-21 Score=216.87 Aligned_cols=296 Identities=15% Similarity=0.259 Sum_probs=225.9
Q ss_pred EEEEEEeCCCCeEEEEEeC----------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
-..++|||++..++|+|.. +.++.||.+.-.... ...+..--..-....+.++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--------------~dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--------------SDLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--------------ccccccccccccccceeeeecc
Confidence 3567999999756777643 344555544321111 0000000112346788999999
Q ss_pred CCCE----EEEEECCCcEEEEEccC---CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE
Q 002264 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (945)
Q Consensus 417 ~g~~----las~~~dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~ 488 (945)
.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.+.. ++++|+.||.|.||| .+-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999875 4445555577889999999999998776 899999999999999 3332222
Q ss_pred Ee--cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 489 NF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 489 ~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.+ ....+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..+.|+|++..-+....+.|+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 22 124567999999865 457899999999999999999988877766554 5789999998765444444567788
Q ss_pred eEEEEeCCCC-ceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-
Q 002264 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG- 641 (945)
Q Consensus 565 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 641 (945)
.|.+||++.. .+++++++|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|..
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999999864 56778888887 78889999876 7888999999999999999999999987544 89999999954
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 002264 642 NLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+++++-||.|.|+.+.+.
T Consensus 310 ~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred chhhhheeccceeeeeeecC
Confidence 48899999999999999765
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.4e-22 Score=209.77 Aligned_cols=233 Identities=10% Similarity=0.189 Sum_probs=208.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
-|...|.|+..-..++ .+++|+.|..+-+|....-..+ ..+.+|+.+|.|+.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i-------------------~S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAI-------------------TSLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchh-------------------heeeccCCcceeeecCcchhhh
Confidence 3788999999876777 6999999999999987554333 2278999999999999999999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
++|+.+|+|++||++.++.++ ++.+|...+.++.|+|-+. ++++|+.|+.+++|| ....+.+.+.+|...|.++
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 8889999999999999999 889999999999999 7788999999999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
.|.| +|+++++++.|.++++||...++....+..|...+.++.|+|..-.++.++. |..+++||+++.+.+...
T Consensus 161 ~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 161 RLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSG 234 (825)
T ss_pred eecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeecc
Confidence 9977 6799999999999999999999999999999999999999999888888886 999999999998888777
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
..... .+.+..|+|++..+++|...
T Consensus 235 ~~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccC-CceeeeecCCceeeecCchh
Confidence 66644 78999999999988888754
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.1e-20 Score=178.66 Aligned_cols=290 Identities=16% Similarity=0.250 Sum_probs=211.2
Q ss_pred cCCCcEEEEEEeC----CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 342 HQGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 342 ~h~~~V~~v~fsp----~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.|+.+|..++|.+ +...++|+.+ ...+.+|+......+. .++...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3888999999985 2233566665 5688899875433111 0111223358888999999875
Q ss_pred ----CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe--
Q 002264 418 ----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (945)
Q Consensus 418 ----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-- 490 (945)
..+||.|+.-|.|+|.|+.+++..+ .+.+|...|..+.|.|+..+ +++++|.|.+|++|+ .++.++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3478999999999999999988776 68899999999999999876 899999999999999 888888776
Q ss_pred -cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE----------------------------ecCCCCeE
Q 002264 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----------------------------YDAPGHWC 541 (945)
Q Consensus 491 -~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~i 541 (945)
.+|.+.|.++.|+. +|.+|+++|.|.++++|++...+.... ...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999977 557999999999999999874321110 01122223
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCce-------------eeEeccccCcceEEE--EEcCCCCEEEEEEC
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI-------------KRTYAGFRKKSNGVV--QFDTTQNHFLAVGE 605 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 605 (945)
-|+.|- |.++++-+. ++.|..|... -.+. +..+.-... .+.-+ +|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333332 567777664 7799999872 1111 112222211 23444 55677899999999
Q ss_pred CCcEEEEECCCCeeE--EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 606 DSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 606 dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.|.|++||++..++. .++..+.....|...+|+.||.+|+..++|++|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999987652 233333444579999999999999999999999999863
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=186.98 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=193.3
Q ss_pred EEEEEEcC-------CCCEEEEEECCCcEEEEEccCCcccccce------------------eeccccccEEEEEEecCC
Q 002264 409 VSRVAWSP-------DGNYVGVAFTKHLIQLYSYAGSNDLRQHS------------------QIDAHVGAVNDLAFAYPN 463 (945)
Q Consensus 409 V~~i~~s~-------~g~~las~~~dg~i~vwd~~~~~~~~~~~------------------~~~~h~~~v~~l~~s~~~ 463 (945)
..|++|-. -|+|+|.|+.|..|.|||++-...+.+.. .-.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 37899999999999999986432221111 123799999999999887
Q ss_pred CeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEE
Q 002264 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (945)
Q Consensus 464 ~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (945)
+. +|+|||.|.+|++|| .+|++...+..|...|.++.|++. ...+|++|+.|++|.+.|.+........-.-.+.|-
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 899999999999999 999999999999999999999987 458999999999999999985332222112234688
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeE
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
.++|.|.....+.++. .+|.++-+|++.. +++.++..|.. .|.+++++..- .++++++.|+.|++|++......
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998776666654 3899999999975 89999999988 89999998754 57888999999999998765443
Q ss_pred EEeecCCCCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCcccccc
Q 002264 621 TSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
......-..+...|.++.|+- -++|.|+..+.+++||+.+.....+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 222211112245677777754 46788888889999999887444433
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-19 Score=171.03 Aligned_cols=265 Identities=14% Similarity=0.228 Sum_probs=194.2
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g 418 (945)
.+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.++...- |... .....|.+.|..|.|-+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~~T--------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WSCT--------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eEEe--------eeEEecCCcEEEEEecCcccc
Confidence 358899999999999997 999999999999997543321 1111 23567999999999976 59
Q ss_pred CEEEEEECCCcEEEEEccC------CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE----
Q 002264 419 NYVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---- 487 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~---- 487 (945)
+.+|+++.|+++.||.-.. +..-....++....+.|+++.|.|....+.+++++.||.+|||+ .+--.+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997521 11222233566788899999999987777999999999999999 443222
Q ss_pred --EEec-------CCCCCEEEEEeeecCC-ccEEEEEEcC-----CeEEEEEccCCCe----eEEecCCCCeEEEEEEcC
Q 002264 488 --FNFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSA 548 (945)
Q Consensus 488 --~~~~-------~~~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~ 548 (945)
..+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2222 3566778888876532 2456666655 4789997766542 235667888999999999
Q ss_pred CC----CEEEEEeecCCCCceEEEEeCCCC--------------------ceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 549 DG----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 549 ~~----~~l~~~~~~~d~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
+- ..|++++ +|| |+||.++.. +.+..+.+|+. .+..+.|+-.|..|.+.|
T Consensus 234 n~Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 234 NIGRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTG 307 (361)
T ss_pred ccCCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecC
Confidence 53 3566665 377 999998731 12344566665 799999999999999999
Q ss_pred CCCcEEEEECCC---CeeEEEeecCC
Q 002264 605 EDSQIKFWDMDN---VNILTSTDAEG 627 (945)
Q Consensus 605 ~dg~i~iwd~~~---~~~~~~~~~~~ 627 (945)
.||.|++|...- .++...+...+
T Consensus 308 dDG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 308 DDGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CCceeeehhhhhhhhheeeeEEeccC
Confidence 999999998653 33444454443
No 157
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.85 E-value=2.2e-19 Score=171.35 Aligned_cols=407 Identities=12% Similarity=0.107 Sum_probs=250.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
-.+|||+|+++|+++.- .+.|=|..+-+..+.+ .--..|..+.|..|... .+.....|+.|.+|+ ...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999765 6777787765443321 12456888999998875 566778899999999 77777778
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+.....++.+++|+|++. .+|.+...|-+|.+|.+.+..... +......+..++|+|||++.+.++.. |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 888888999999988532 677778889999999998765543 33444567899999999999988751 111222233
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
.-.....++.+..... ..+.+.|+|||+.+++-.. +-.|+.|.. .-.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~--------------~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------GLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee--------------ccceeEEEeccccceEEee
Confidence 2333445555554443 5677999999988775432 222222221 1157889999999999999
Q ss_pred ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCC
Q 002264 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (945)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (945)
+.|+.+|+.+--+- .|-|+++--+.-.+.+..-..........+-.....+.|..
T Consensus 229 syD~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~- 283 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD- 283 (447)
T ss_pred ccchhhhhhceeee------------------------eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc-
Confidence 99999998765332 22221110000000000000000000000000000000000
Q ss_pred CccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeee
Q 002264 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (945)
Q Consensus 728 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~ 807 (945)
-...+|...+ . +|.+...
T Consensus 284 --------~~a~~~~~se------------------------~-------------------~YE~~~~----------- 301 (447)
T KOG4497|consen 284 --------LEAHIWEESE------------------------T-------------------IYEQQMT----------- 301 (447)
T ss_pred --------cccCccccch------------------------h-------------------hhhhhhc-----------
Confidence 0001111100 0 0000000
Q ss_pred eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCC---CeEEEEeccCceEEEEecCCCCCeeEEEeecCC
Q 002264 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (945)
Q Consensus 808 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~ 884 (945)
.+.+ ..-++.+ ..+. ..-.+--++||+|..++|+-.| +.+-+||+...+....+. ...+|....|.| +
T Consensus 302 -pv~~---~~lkp~t-D~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~ 372 (447)
T KOG4497|consen 302 -PVKV---HKLKPPT-DFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-G 372 (447)
T ss_pred -ceee---ecccCCC-CCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-C
Confidence 0000 0000000 0111 3445778999999999999986 459999999877766654 567899999999 7
Q ss_pred CceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCce
Q 002264 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (945)
Q Consensus 885 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~ 938 (945)
...|+.+.....+++|......++..-. ..-.|..++|.-+|..++-.+.|.-
T Consensus 373 ~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 373 RPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 7777777777789999977655554432 3357999999999999999888863
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=4e-17 Score=184.80 Aligned_cols=371 Identities=22% Similarity=0.367 Sum_probs=280.5
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEEEecCCCC-CEEEEEeeecCCcc-EEEEEEc-CCeE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEA-PVYSICPHHKENIQ-FIFSTAI-DGKI 520 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 520 (945)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+ ..+. .+..+..+.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3557999999999999999 788888999999999 5554 6677776443 77777774 44555 5555444 9999
Q ss_pred EEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-
Q 002264 521 KAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN- 598 (945)
Q Consensus 521 ~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 598 (945)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+++|+...+..+..+.+|.. .+.+++++|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999988 6777788889999999999999997777752 388999999999888888888766 799999999988
Q ss_pred EEEEEECCCcEEEEECCCCeeEE-EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 599 HFLAVGEDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
.+++++.|+.|++||...+.... .+..+.. .. ...|+|++..+++++.|+.+++|+...........
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 44445899999999988777777 4655543 32 22899999999999999999999997552100000
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
. +|...+.++.|.|++..+++++.|+.+.+|+...... ..... ...|...+..+
T Consensus 281 ~---~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~ 334 (466)
T COG2319 281 S---GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSL 334 (466)
T ss_pred e---cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEE
Confidence 0 1556788889999888888888888889996533210 00000 01156678888
Q ss_pred eecCCCceEEec-C-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEE-eecCceEEEEecccceEEEEecCC
Q 002264 838 ALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 838 ~~s~dg~~la~~-s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~las-g~~dg~v~vwd~~~~~~~~~l~~h 914 (945)
.+++++..++.+ . ++.+.+|++.............. +..+.+++ + ..++. +..++.+.+|+............+
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCC
Confidence 884343555555 4 77799999988773333332222 89999998 7 55555 889999999999998887777655
Q ss_pred CcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
...+....+++++..+++++.++.+++|+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 478999999999999999999999999986
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1e-19 Score=182.73 Aligned_cols=290 Identities=12% Similarity=0.150 Sum_probs=216.6
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE-EEEEECCCcEEEEEccCCc-cccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY-VGVAFTKHLIQLYSYAGSN-DLRQ 443 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~-las~~~dg~i~vwd~~~~~-~~~~ 443 (945)
..+++|||+...+.... .+-......+.++.|+....+ +|+.+.|..|++|.-.... .+..
T Consensus 11 gd~~kl~D~s~~~~~~~-----------------~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE-----------------YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc-----------------cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 45799999876544321 001112334999999987642 3344567889999754321 1111
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEE
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (945)
.....+. .-.|++...... ++++||..+.|+||| ....+.+.+++|...|+++.++.. ..+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEE
Confidence 1122222 223333333334 899999999999999 555556778999999999998764 479999999999999
Q ss_pred EEccCCCeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC-CEE
Q 002264 523 WLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHF 600 (945)
Q Consensus 523 wd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 600 (945)
..+.++.....+... +..+.-+.|++..+.+++... .+|.|.+||.....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988877777666 446779999999888776554 289999999999888888776666688889999965 567
Q ss_pred EEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcc
Q 002264 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (945)
++.|.|..|++||.........+... + +...++|+++|.+|+.|...|.|..||++.....+.....|.. .|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~-~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-----sV 296 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS-H--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-----SV 296 (673)
T ss_pred EEecccceEEEeecccccccceeeec-C--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-----ce
Confidence 77899999999999987777776553 2 7899999999999999999999999999988777777766554 48
Q ss_pred eeeeecccc
Q 002264 681 ESVALKVSA 689 (945)
Q Consensus 681 ~~v~~s~~g 689 (945)
++++|-|.-
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 899998764
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=9.4e-20 Score=173.66 Aligned_cols=283 Identities=11% Similarity=0.124 Sum_probs=201.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCe------------eEEEeecCCCCCCccEEEEc-------CCCCEEEEEE
Q 002264 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------------ILTSTDAEGGLPNLPRLRFS-------KEGNLLAVTT 648 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~v~~s-------p~g~~l~~~~ 648 (945)
...+.|+|||..|++-+.|..+.+|++...- ....+.... ...|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeecc
Confidence 4558899999999999999999999985311 111111111 1256777775 5778999999
Q ss_pred CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCC
Q 002264 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (945)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (945)
.+.-|++||.-+| +....+.......--....+++|+|||..|++|..
T Consensus 131 r~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk------------------------------- 178 (406)
T KOG2919|consen 131 RDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK------------------------------- 178 (406)
T ss_pred ccCceeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-------------------------------
Confidence 9999999999988 33333333222111223567899999999875554
Q ss_pred ccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC-eEEEeeecCeEEEEeecCCCCCCCCceeee
Q 002264 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (945)
Q Consensus 729 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~ 807 (945)
..|+++++......-........+..+..+-+.+++|+|-.. .++.++-...+-||.-
T Consensus 179 -------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~-------------- 237 (406)
T KOG2919|consen 179 -------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND-------------- 237 (406)
T ss_pred -------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec--------------
Confidence 778888875422222222222222344567889999999655 6677766767766641
Q ss_pred eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccC-ceEEEEecCCCC-CeeEEEe--e
Q 002264 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTTFMSPPP-ASTFLAF--H 881 (945)
Q Consensus 808 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~-~~~~~~~~~h~~-~i~~l~~--s 881 (945)
.++.++.. +-+ |.+.|+.++|.+||+.|.+|+ +.+|..||++. +.++..+..|.+ .-..|.| .
T Consensus 238 --------~~~~pl~l-lgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld 306 (406)
T KOG2919|consen 238 --------DGRRPLQL-LGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD 306 (406)
T ss_pred --------CCCCceee-ecc--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecC
Confidence 22222222 334 999999999999999999998 78999999984 556777777766 3334444 5
Q ss_pred cCCCceEEEeecCceEEEEeccc-ceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 882 PQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 882 ~~~~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
| ++++||+|+.||.|++||+++ |..+..+..|+..|..++++|--.+++|++..
T Consensus 307 ~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 307 P-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred C-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 7 889999999999999999998 77788888899999999999998888877653
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=170.08 Aligned_cols=287 Identities=14% Similarity=0.197 Sum_probs=208.8
Q ss_pred EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc-------CCCC
Q 002264 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s-------~~g~ 419 (945)
.-.+.|||||.. +.+-+.|..+.+|++...-.-........ .+.+..+-.-....|...+|= |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~~------~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPLN------FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCccc------cccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 456899999995 67778899999999753211100000000 000000011123567777774 6778
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeecccccc---EEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceE--EEe--
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA---VNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL--FNF-- 490 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~---v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~--~~~-- 490 (945)
++|+.+.+.-|++||.-+|+.......+ .|... -.+++|+|||. .|+. +....|+++| ..|+.- ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999765433222 35443 45799999999 5664 5588999999 455432 111
Q ss_pred ---cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 491 ---EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 491 ---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
.+..+.+.+++|+|. +...++.|+...++-||.-........+-+|.+.|+.+.|.++|+.|+++.. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 233677899999987 4578999999999999998888899999999999999999999999999986 577899
Q ss_pred EEeCCC-CceeeEeccccCcceEE--EEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 568 EWNESE-GTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 568 iwd~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
.||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999986 44555666554422222 45578899999999999999999998 776777666544 8999999999888
Q ss_pred EEEEECC
Q 002264 644 LAVTTAD 650 (945)
Q Consensus 644 l~~~~~d 650 (945)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887643
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=5.8e-19 Score=183.26 Aligned_cols=256 Identities=14% Similarity=0.214 Sum_probs=184.6
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~ 485 (945)
.|..++|-|||..|+.+..+ .+.+||...|..+. ++++|...|++++|+.||+ .|+||+.|+.|.+|+ ..|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccce
Confidence 89999999999998887544 69999999998777 7889999999999999999 899999999999999 4443
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
. .+ .|.+.|.|+.|+|-. +.|++++-. ..-+|..+...... ......+.+++|..||.+++.+-. +|+
T Consensus 88 L--kY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~----nGT 155 (1081)
T KOG1538|consen 88 L--KY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMF----NGT 155 (1081)
T ss_pred e--ee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEecc----Cce
Confidence 3 33 489999999998864 677777643 34568544322111 122347889999999999999875 889
Q ss_pred EEEEeCCCCceeeEe--ccccCcceEEEEEcCCC-----CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 566 LVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQ-----NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 566 i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|.+-+-. ++....+ ++..+.++.+++|+|.. ..+++..-..++.++.+. |+.+..-..-+- .-.|+.+.
T Consensus 156 IsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf 231 (1081)
T KOG1538|consen 156 ISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYF 231 (1081)
T ss_pred EEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--Cchhheec
Confidence 9887643 3333333 34445589999999864 456677777778888774 333332111111 34789999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
++|.++..|+.|+.+.+|.-+ | -.+-++ .....+|..++..|+++.+
T Consensus 232 ~NGEy~LiGGsdk~L~~fTR~-G-vrLGTv-----g~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFTRD-G-VRLGTV-----GEQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred cCCcEEEEccCCCceEEEeec-C-eEEeec-----cccceeEEEEEEccCCceE
Confidence 999999999999999999653 2 111111 1133467777777776655
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-19 Score=179.82 Aligned_cols=293 Identities=12% Similarity=0.112 Sum_probs=215.4
Q ss_pred eeecCCCCc--cccCCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccC
Q 002264 318 VTYSSSRHQ--TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394 (945)
Q Consensus 318 v~~~~~~~~--~~~~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 394 (945)
+-+...++. +|++.+........-+ -.-.|..+.|+......+|+-+.|..|++|.-. |+.. . +.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~-~--Vp-------- 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTP-E--VP-------- 72 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCC-c--cc--------
Confidence 334444444 8888776655544433 223499999998774333444557788999743 3211 0 00
Q ss_pred cccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 395 LPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 395 ~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.. ....+. .-.|++......|+++|+..+.|+|||++..-+.+ .+.+|+..|+++.++-... ++++++..
T Consensus 73 --~~-~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~g 142 (673)
T KOG4378|consen 73 --RV-RKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDG 142 (673)
T ss_pred --ee-eccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccC
Confidence 00 112222 33444444455899999999999999998544444 6789999999999999888 89999999
Q ss_pred CcEEEEe-CCCceEEEecCCCC-CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCeEEEEEEcCCCC
Q 002264 475 KLIKVWE-LSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGS 551 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~ 551 (945)
|.|.|.. .++.....|....+ .|.-+.+++.. ..+|.+++.+|.|.+||+....+.+.+ ..|..+...++|+|...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence 9999999 77777777765433 45678888875 367888999999999999887777654 45777889999999665
Q ss_pred -EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCC
Q 002264 552 -RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGL 629 (945)
Q Consensus 552 -~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 629 (945)
.|++.|. |..|.+||.+..+....+...+ +...++|+++|.+|++|...|.|+.||++. ..++..+..|..
T Consensus 222 ~l~vsVG~----Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~- 294 (673)
T KOG4378|consen 222 ALLVSVGY----DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA- 294 (673)
T ss_pred ceEEEecc----cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-
Confidence 5567776 8999999999877766665433 678899999999999999999999999986 557777777655
Q ss_pred CCccEEEEcCCC
Q 002264 630 PNLPRLRFSKEG 641 (945)
Q Consensus 630 ~~v~~v~~sp~g 641 (945)
.|++++|-|..
T Consensus 295 -sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 -SVTRVAFQPSP 305 (673)
T ss_pred -ceeEEEeeecc
Confidence 79999998864
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.1e-17 Score=183.23 Aligned_cols=371 Identities=25% Similarity=0.396 Sum_probs=269.9
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC-cccccccccccccccCcccccccccCCC-ccEEEEEE-c
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~-s 415 (945)
....|...|.++.|.+.+. .++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 4456899999999999998 48888889999999998775 221 133322 46777777 8
Q ss_pred CCCC-EEEEEEC-CCcEEEEEccC-CcccccceeeccccccEEEEEEecCCCeeEEEEEeC-CCcEEEEe-CCCceEEEe
Q 002264 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 416 ~~g~-~las~~~-dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vwd-~~~~~~~~~ 490 (945)
+++. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999987 43333 5778999999999999999 7788875 99999999 667888899
Q ss_pred cCCCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 99999999999985 445 55555999999999888666666 466666654 3389999988886664 899999
Q ss_pred EeCCCCce-eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987664 44444553 47888999998888888888899999999888776666522223368889884343566665
Q ss_pred -ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCC
Q 002264 648 -TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (945)
Q Consensus 648 -~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (945)
..|+.+.+|+..... ......... .+..+.+.+ . ...
T Consensus 347 ~~~d~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~-~-~~~--------------------------------- 384 (466)
T COG2319 347 GSDDGTIRLWDLRTGK-PLKTLEGHS------NVLSVSFSP-D-GRV--------------------------------- 384 (466)
T ss_pred ecCCCcEEeeecCCCc-eeEEecCCc------eEEEEEECC-C-CCE---------------------------------
Confidence 678899999998763 111111111 144555554 3 211
Q ss_pred CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeec
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~ 794 (945)
...+..++.+.+|+........... . +...+....+++++..++.++.++.+++|++.
T Consensus 385 --~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 385 --VSSGSTDGTVRLWDLSTGSLLRNLD-----G---HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred --EEEecCCCceEEEecccCeeeeecc-----C---CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 0125666889999987422211111 1 11678899999999999998999999999753
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=9.8e-19 Score=174.69 Aligned_cols=306 Identities=12% Similarity=0.087 Sum_probs=219.3
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC----CeeEEecCCCCeEEEEEEcCC-CCEEEEEeecCC
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKD 561 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~d 561 (945)
....+-+..+|++++|+|..+-+++++|..-|.|-+||+.+. .....+..|..+|.++.|+|. ...+++.+.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 344556788999999999988789999999999999999633 334567788889999999994 456777776
Q ss_pred CCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee-EEEeecCCCCCCccEEEEcC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp 639 (945)
||+|++-|+..+.....+.... ...+..+.|+.+...++++..=|.+.+||++++.. ...+..|.. .|++++++|
T Consensus 256 -DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 256 -DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred -CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 9999999998765443333311 22466678888888888988888999999987554 555555544 899999999
Q ss_pred -CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 640 -EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 640 -~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
...+||+++.|++.+|||++.-.. ... |
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~-------K~s-------------p------------------------------- 361 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRG-------KAS-------------P------------------------------- 361 (498)
T ss_pred CCchheeecccCcceeeeehhhhcC-------CCC-------------c-------------------------------
Confidence 567899999999999999964310 000 0
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
.+..+ .|...|.+..|||.|..|++.+.|..|+|||..-
T Consensus 362 --------------------~lst~------------------~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--- 400 (498)
T KOG4328|consen 362 --------------------FLSTL------------------PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--- 400 (498)
T ss_pred --------------------ceecc------------------cccceeeeeEEcCCCCceEeeccCCceEEeeccc---
Confidence 00011 1888899999999988899999999999998520
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC-Cee
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-AST 876 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~-~i~ 876 (945)
+.-|+...+.+......+ .|- .....+|.||..++++|. -..|-|+|-..++.+..+-.... .|.
T Consensus 401 -----------~sa~~~p~~~I~Hn~~t~-Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 401 -----------ISAKDEPLGTIPHNNRTG-RWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred -----------ccccCCccceeeccCccc-ccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 111233333322221111 011 133468999999999998 67799999988887777644333 455
Q ss_pred E-EEeecCCCc-eEEEeecCceEEEEeccc
Q 002264 877 F-LAFHPQDNN-IIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 877 ~-l~~s~~~~~-~lasg~~dg~v~vwd~~~ 904 (945)
+ ..|+| -+. ++|-|+..|.|+||--+.
T Consensus 468 ~vn~~HP-~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 468 SVNEFHP-MRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cceeecc-cccceeccCCccceEEEEecCC
Confidence 5 47999 565 666666778999887543
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=7.8e-19 Score=167.98 Aligned_cols=251 Identities=18% Similarity=0.241 Sum_probs=183.3
Q ss_pred ccccCCCccEEEEEEcC-----CCCEEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCC--eeEEEE
Q 002264 400 SIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNK--LLCVVT 470 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~-----~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~--~~~l~s 470 (945)
++..+|..+|..++|++ .-..+|+++. ..+.+|+......++.+..+. .|......++|+-+.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678999999999986 2345666654 468888876544333332332 4778889999987543 348899
Q ss_pred EeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEE
Q 002264 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (945)
Q Consensus 471 ~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~ 546 (945)
||.-|.|+|.| .++++...+.+|...|+.+.++|.. .+++++++.|.+|++|++++..++..+. +|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999 9999999999999999999999974 4899999999999999999999888764 57779999999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec----------------------------cccCcceEEEEEcCCCC
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA----------------------------GFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 598 (945)
+++|.+++++|. |..|.+|++...+....+. .|.. .|.|+.|- |+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--GD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--hh
Confidence 999999999997 9999999998432211111 0111 22333332 57
Q ss_pred EEEEEECCCcEEEEECC-CCe-------------eEEEeecCCCCCCccE--EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 599 HFLAVGEDSQIKFWDMD-NVN-------------ILTSTDAEGGLPNLPR--LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~~~v~~--v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++++-+-++.|..|... -++ .+..++.+.. .|+- .+|.|-+++||.|...|.|.+||++..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 88898889999999872 111 1222222221 3333 455666788888888888888888765
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=174.74 Aligned_cols=479 Identities=13% Similarity=0.095 Sum_probs=278.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEE------ecCCCeeEEEEEeCCCcE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~------s~~~~~~~l~s~s~d~~i 477 (945)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.+ .... .-....|....+ ...+..-.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 477788899999888877777555444444554322 2111 101111111111 111111267888899999
Q ss_pred EEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+.+..++.-..+..|.+.+.+-.|+| +|.-|+++++||.|++|. +++-...++......|.|++|.|+...++.+.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999988888888999999999999987 567799999999999997 44555555566677999999999998888774
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
.+.+.+=.+.....+.....|.+ .+-++.|++..+.+++||+|-..++||.. |..+..-..|.+ +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56787777777777777888877 89999999999999999999999999975 444444444544 8999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+|+ +.++.++.. ++|+=..+ .+.|..++|++||+.++.|.+.+..-+.+.-.
T Consensus 236 npd-~~~~v~S~n-t~R~~~p~-----------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie--------- 287 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TARFSSPR-----------------VGSIFNLSWSADGTQATCGTSTGQLIVAYAIE--------- 287 (737)
T ss_pred ccc-cceeeeeee-eeeecCCC-----------------ccceEEEEEcCCCceeeccccCceEEEeeeeh---------
Confidence 999 666666653 55532222 23578899999999998877765432211100
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecC--
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR-- 795 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~-- 795 (945)
....-+..-++......|.+-++.. +....+. ...+|...+..- + +|+++.+. .+++|.-..
T Consensus 288 ---q~l~~~n~~~t~~~r~~I~vrdV~~----~v~d~LE------~p~rv~k~sL~Y-~-hLvvaTs~-qvyiys~knwn 351 (737)
T KOG1524|consen 288 ---QQLVSGNLKATSKSRKSITVRDVAT----GVQDILE------FPQRVVKFSLGY-G-HLVVATSL-QVYIYSEKNWN 351 (737)
T ss_pred ---hhhhhccceeEeeccceEEeehhhh----hHHHHhh------Cccceeeeeece-e-EEEEEecc-EEEEEecCCcc
Confidence 0000111112222334444444442 1112222 223444444321 1 23322221 333332110
Q ss_pred ---------CCCC----CCCceeee--eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCe-EEEE
Q 002264 796 ---------NEQN----PSGKATAS--AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGK-ISLF 857 (945)
Q Consensus 796 ---------~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~-i~iw 857 (945)
..++ ........ .++.+|...........+++. .....+.-..|-....|+.-. |.+ +.+|
T Consensus 352 tpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~-~~dlL~~rtlsLandtLaird~ad~kvlhlF 430 (737)
T KOG1524|consen 352 TPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGS-QIDLLTWRTLSLANDTLAIRDNADPKVLHLF 430 (737)
T ss_pred CcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCc-ccccccceeeecccceEEeecCCCCeeEEec
Confidence 0000 00000000 012222222222222223320 011111112222333455543 444 7888
Q ss_pred ec-cCceEEEE--ecCCCCCeeEEEeec---CCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceee
Q 002264 858 NM-MTFKVMTT--FMSPPPASTFLAFHP---QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 858 d~-~~~~~~~~--~~~h~~~i~~l~~s~---~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
|. .+|+.... +-.|...|..++... .+.+.+|.-..++.++|-.+.+......+---...|..++|+...+. +
T Consensus 431 d~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNi-L 509 (737)
T KOG1524|consen 431 DLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNI-L 509 (737)
T ss_pred cCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccccce-e
Confidence 87 66655322 112555565555532 15567887888888888776643222222223345788999966554 4
Q ss_pred eecCCceEEEEec
Q 002264 932 SSGADAQVTLCVE 944 (945)
Q Consensus 932 s~~~Dg~i~vWdl 944 (945)
+|-.|+++.||=.
T Consensus 510 cglqDt~fsVWy~ 522 (737)
T KOG1524|consen 510 CGLQDTCFSVWYY 522 (737)
T ss_pred eeeccceEEEEEc
Confidence 5888999999954
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=4.8e-19 Score=172.46 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=144.2
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
..+++++. |.++=++++|||--.--|++|..-+.|++|...+|.-... ..-+.+|+..|..++
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence 45566666 9999999999994222388998889999999988765432 133677999999999
Q ss_pred EcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe----CCCceEE
Q 002264 414 WSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----LSGRKLF 488 (945)
Q Consensus 414 ~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd----~~~~~~~ 488 (945)
|||. ...+|+|+.||+|+|||++.+.....+ ..++|.+.|+.|.|+..-. +|++|+.||+++||| ..++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 9996 567899999999999999988543333 2478999999999998888 899999999999999 3467889
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999999999999865 6888999999999999864
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=2.1e-18 Score=168.96 Aligned_cols=248 Identities=16% Similarity=0.212 Sum_probs=189.7
Q ss_pred cEEEEEEcC-----CCCEEEEE---ECCCcEEEEEc-cCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 408 ~V~~i~~s~-----~g~~las~---~~dg~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
.|+.++|.. +.++||.. +..|-..+.-+ ++|+.-.....+.||+++|..++|+|-+.. .++|||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455566644 45666653 22333444433 234443444467799999999999998776 899999999999
Q ss_pred EEe-CCC-------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC
Q 002264 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 479 vwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
||. ..+ +++..+.+|...|-.++|+|... +.|++++.|.+|.+|++.+++....+. |...|.+++|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999865 789999999999999999999999887 88899999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
.++++++. |..|++||.++++.+..-.+|.+.....+.|-.++..+-+|- .+..+-+||..+-+.-..+..-.
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999985 999999999999999988888776666677878888444443 67889999987644322222222
Q ss_pred CCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCc
Q 002264 628 GLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGL 662 (945)
Q Consensus 628 ~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~ 662 (945)
..+.|.---|.+|.+++..++. |+.||-|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2335677778888888876654 8999999997764
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=3.2e-18 Score=167.70 Aligned_cols=234 Identities=13% Similarity=0.217 Sum_probs=186.3
Q ss_pred ccccCCCccEEEEEEcC-CCCEEEEEECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
..+.||.++|..++|+| +...||+|+.|.+|.||.+..+... .....+.+|...|--++|+|...+ .|+|++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 45789999999999999 6778999999999999998755332 334478899999999999998877 88999999
Q ss_pred CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCE
Q 002264 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~ 552 (945)
.+|.+|| .+|+.+.++. |.+.|++++|+. ||.++++++.|..|++||.++++.+..-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 8999888888 999999999976 778999999999999999999988887766544 555667888888
Q ss_pred EEEEeecCCCCceEEEEeCCCCc---eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee-EEEeecCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEG 627 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~ 627 (945)
+++.|.++-.+.++-+||...-+ ....+... ..+---.+.++.+.++.+| .|+.|+-|.+....+ +..+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 77777777789999999977543 22333332 2355567889989888877 899999999977653 33333333
Q ss_pred CCCCccEEEEcCC
Q 002264 628 GLPNLPRLRFSKE 640 (945)
Q Consensus 628 ~~~~v~~v~~sp~ 640 (945)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 3345567777774
No 171
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=168.53 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=185.6
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCe-EEEEEeCcCcEEEEEcCCCCccc-ccccccccccccCcccccccccCCCccEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQT-LLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~-llasgs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
|..-.....|.+.|..+.-++-|+. +.|+=+..|.|.||++...-... ...+.+-+ ........+.+|...=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 4445566778889999999887643 45555778999999985422111 00011100 111122457899999999
Q ss_pred EEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc--eE
Q 002264 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KL 487 (945)
Q Consensus 412 i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~--~~ 487 (945)
++|||- --.|++|.--+.|++|...+|.-..-...+.+|+..|-.++|||.... .|+|||-||+|+||| ..+. ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234778877788999999887644333356789999999999998777 899999999999999 6652 22
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC---CCeeEEecCCCCeEEEEEEcCCCCE-EEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~ 563 (945)
...+.|.+.|+.|.|+... .+|++|+.||+++|||++. ++.+..+..|..+|+++.|+|.... +++++ .|
T Consensus 296 ~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----~D 369 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----ED 369 (440)
T ss_pred eEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----CC
Confidence 3348899999999997643 4999999999999999986 4456688999999999999996554 44444 38
Q ss_pred ceEEEEeCCCCce----------------eeEecccc-CcceEEEEEcCCC-CEEEEEECCC
Q 002264 564 SFLVEWNESEGTI----------------KRTYAGFR-KKSNGVVQFDTTQ-NHFLAVGEDS 607 (945)
Q Consensus 564 ~~i~iwd~~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~-~~l~~~~~dg 607 (945)
.+|.+||+..-.- .+.+..|. ...+..+.|+++- .++++.+.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 9999999863211 11111221 1235567788764 4666666776
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=7.1e-19 Score=175.22 Aligned_cols=263 Identities=13% Similarity=0.185 Sum_probs=187.2
Q ss_pred cEEEEEEeCC-------CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccC----cccccccccCCCccEEEEEE
Q 002264 346 TVISMDFHPS-------HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS----LPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 346 ~V~~v~fsp~-------g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~V~~i~~ 414 (945)
...|++|... |+ ++|.|+.|..|.|||+.-...+. ++-......+. .......-.+|+..|.+++|
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~--P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL--PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc--cceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 3455555432 55 59999999999999986332221 00000000000 00011234579999999999
Q ss_pred cCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE-EEec
Q 002264 415 SPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FNFE 491 (945)
Q Consensus 415 s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~-~~~~ 491 (945)
+.. ...||+||.|.+|++||+.+|++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.| ...... ..++
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE
Confidence 985 5679999999999999999998877 66789999999999998776 899999999999999 532222 2222
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
..+.|-.++|.+... ..++++..||+|+-+|++.. ++.+++..|...|.++++++.-..+++.+. .++.+.+|+
T Consensus 328 -~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~ 402 (463)
T KOG0270|consen 328 -FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWK 402 (463)
T ss_pred -eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEe
Confidence 456788999988754 67888899999999999986 778899999999999999997766554433 499999999
Q ss_pred CCCCceeeEecc-ccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCCeeE
Q 002264 571 ESEGTIKRTYAG-FRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 571 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+..-........ ..-....|.++.|+-. .++.||..+.+++||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 875443221111 1112356667777654 5566778888999999876554
No 173
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.8e-19 Score=181.18 Aligned_cols=295 Identities=17% Similarity=0.224 Sum_probs=231.3
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--C
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~ 417 (945)
+-+|.+.|..|.|...|. +|++||.|..|.+||+..++... ....||...|..-.|-| +
T Consensus 138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l------------------~f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKL------------------SFESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccc------------------ccccccccchhhhhccCCCC
Confidence 345999999999999999 69999999999999999887653 23568999999999988 4
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe---cCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGH 493 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~---~~~ 493 (945)
.+-+++++.||.|++=.+.....+...+.+..|.++|..++.-|+... -|.|++.|+.+.-.| ..+.+...+ ..+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 567999999999999887655555444467789999999999999887 799999999999999 555433222 223
Q ss_pred CC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee------EEec------CCCCeEEEEEEcCCCCEEEEEee
Q 002264 494 EA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 494 ~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
.. ..++++..|.+ ...+++++.|..+++||.+.-... ..+. .....|++++|+.++.-+++...
T Consensus 278 ~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 33 56788888874 368999999999999997653322 1111 12237999999988777776664
Q ss_pred cCCCCceEEEEeCCC--C----------cee-eEeccccCcc-eEEE-EEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 559 SKDGDSFLVEWNESE--G----------TIK-RTYAGFRKKS-NGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+-.|+++.... | ..+ +.+++|.+.. |..+ .|.|...++++|+.-|.|.||+-.+++.+..+
T Consensus 357 ----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 357 ----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred ----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 77789885432 2 122 3377886632 4444 56888999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+..+ -|+|+.-+|--.+||+.+-|..|+||...+.
T Consensus 433 egDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 433 EGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 88777 7999999999999999999999999988544
No 174
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.2e-17 Score=173.68 Aligned_cols=462 Identities=11% Similarity=0.090 Sum_probs=273.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-----
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~----- 417 (945)
|...-.++.|+|.| |+|-|+ ...|.+-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44457889999999 688776 5688899988877663 36669999999999873
Q ss_pred -------CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC---CCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 418 -------g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
.-.||++...|.|.+||...+..+. .+..|..++..++|-+. .++ +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1257888889999999999876555 56778999999999763 323 566666688999999 99999
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC------CCeeEEecCC-CC--------------------
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDYDAP-GH-------------------- 539 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~-~~-------------------- 539 (945)
............|+.+.|-.. +.+...+..|.+.+-+.-. ....+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888877777788888887643 5555555566666554321 1111111111 00
Q ss_pred -----eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC--CEEEEEECCCcEEEE
Q 002264 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (945)
Q Consensus 540 -----~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iw 612 (945)
..-.++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0112456776665555554 66799999988877777665544 45556676654 678899999999999
Q ss_pred ECCCCe----------------eEEEeecCCCCCCccEEEEcCC-CCEEEEEECCCcEEEEECCCCccccccccCCcccc
Q 002264 613 DMDNVN----------------ILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (945)
Q Consensus 613 d~~~~~----------------~~~~~~~~~~~~~v~~v~~sp~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 675 (945)
-.+... ....+..-... .+...+..|. ...++.--.+|.+.+|.+.++........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 766522 11122111111 1122223342 44555556688899999986622111111000000
Q ss_pred c-----c-----CcceeeeecccccceeccCCCCCccccccCCCCCCCccc--CCCCCccCCCCCccccCCCCCCccccc
Q 002264 676 L-----R-----TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN--GVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 676 ~-----~-----~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
. . ....-+.++.||..- .+..+ ....+........ .+......---.++.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sGs~~--~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SGSTC--VRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CCcee--eecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 0 0 001111222333110 00000 0001111000000 011111111235688999999999999
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (945)
........+.. |.+.|.++.|....+.+ +.+.... .+........+.+-|..+|.....
T Consensus 455 st~~v~~~fsv--------ht~~VkgleW~g~sslv-Sfsys~~------------n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 STNAVAASFSV--------HTSLVKGLEWLGNSSLV-SFSYSHV------------NSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cchhhhhhhcc--------cccceeeeeeccceeEE-Eeeeccc------------cccccceeeeEEEEEccccccccc
Confidence 86544443333 88999999998777644 3332200 000001111233446666653332
Q ss_pred cccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE
Q 002264 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (945)
Q Consensus 824 ~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~ 864 (945)
.-.......+|..+..|.-|+|++..- +.-+.+||+++..+
T Consensus 514 R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 211112678899999999999999998 66799999865443
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.9e-19 Score=196.89 Aligned_cols=281 Identities=12% Similarity=0.160 Sum_probs=209.9
Q ss_pred ceeecCCCCc-cccCCCCCc----ceEEeecCCCcEEEEEEeCCCCe---EEEEEeCcCcEEEEEcCCCCcccccccccc
Q 002264 317 EVTYSSSRHQ-TWSLDDLPR----TVAVSLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIW 388 (945)
Q Consensus 317 ~v~~~~~~~~-~~~~~~~~~----~~~~~~~h~~~V~~v~fsp~g~~---llasgs~dg~i~iwd~~~~~~~~~~~~~~~ 388 (945)
+..|+..... +|.++.... .....+.-...-+.++|.+.|.. ++|.|..||.|.+||...- +......
T Consensus 32 D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~~-- 107 (1049)
T KOG0307|consen 32 DASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASEE-- 107 (1049)
T ss_pred ccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcchH--
Confidence 3344333333 555553332 24445556678999999998875 6999999999999998652 1100000
Q ss_pred cccccCcccccccccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeE
Q 002264 389 DMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (945)
Q Consensus 389 ~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~ 467 (945)
.......|++.|..+.|++.+. +||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.. +
T Consensus 108 ---------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-I 176 (1049)
T KOG0307|consen 108 ---------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-I 176 (1049)
T ss_pred ---------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-H
Confidence 1123567999999999999654 99999999999999998754433111 1235678999999987766 8
Q ss_pred EEEEeCCCcEEEEe-CCCceEEEecCCCC--CEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCe-eEEecCCCCe
Q 002264 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGS-RVDYDAPGHW 540 (945)
Q Consensus 468 l~s~s~d~~i~vwd-~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~-~~~~~~~~~~ 540 (945)
|++++.+|.+.||| ...+.+..+..+.. .+..+.|+|+.- ..+++++.|. .|.+||++.... ...+..|...
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred hhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 99999999999999 66677777766544 478899999865 4455555543 599999887544 4466789999
Q ss_pred EEEEEEcCCC-CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCCe
Q 002264 541 CTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 541 i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (945)
|.++.|++.+ +++++++. |+.|.+|+..+++.+..+....+ .+..+.|+|... .+++++-||.|.||.+.+..
T Consensus 256 ilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeccCCCCchhhhcccC----CCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999976 77788874 99999999999999999987544 788899999775 77778899999999987654
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=9e-18 Score=165.55 Aligned_cols=316 Identities=14% Similarity=0.178 Sum_probs=211.4
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---------eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---------RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
..++.++.|.... ...+++|+.|..|++|-+..... ...+..|...|+.+.|+|+|..|++++. ++
T Consensus 13 ~~pv~s~dfq~n~-~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D----~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNS-LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD----GG 87 (434)
T ss_pred CCceEEEEeccCc-ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC----Cc
Confidence 4578888887643 33899999999999998765322 1245668889999999999999999986 88
Q ss_pred eEEEEeCC--------C--------CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 565 FLVEWNES--------E--------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 565 ~i~iwd~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
.+.+|-.. + ....+.+.+|.. .+..++|+|++.++++++.|+.+++||+..|.....+..|.+
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 99999866 2 223455666665 788899999999999999999999999999999999988877
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (945)
.+..++|.|-++++++-+.|...+.+.+... +.... +.. ..+.
T Consensus 167 --yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~-~~~~~---------------~~~----~~m~--------------- 209 (434)
T KOG1009|consen 167 --YVQGVAWDPLNQYVASKSSDRHPEGFSAKLK-QVIKR---------------HGL----DIMP--------------- 209 (434)
T ss_pred --ccceeecchhhhhhhhhccCcccceeeeeee-eeeee---------------eee----eEee---------------
Confidence 8999999999999999999986777666433 11110 000 0000
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee----
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS---- 784 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~---- 784 (945)
+-....+.-+.+.+-- ... -..-...++|+|||..+++.+.
T Consensus 210 ---------------------~~~~~~~e~~s~rLfh---DeT-----------lksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 210 ---------------------AKAFNEREGKSTRLFH---DET-----------LKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred ---------------------ecccCCCCcceeeeee---cCc-----------hhhhhhhcccCCCCcEEEcccceeee
Confidence 0000001111111100 000 1223456788888887776543
Q ss_pred cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeec------------------CCCceE
Q 002264 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS------------------KNDSYV 846 (945)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s------------------~dg~~l 846 (945)
.+.+.. ....+++-..-......+++ .......+.|+ |-+-.+
T Consensus 255 g~~~~~-----------------n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 255 GGGVFR-----------------NTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred CCceee-----------------ceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 122210 01111111111111111222 33334444443 334567
Q ss_pred EecCCCeEEEEeccCceEEEEecC-CCCCeeEEEeecCCCceEEEeecCceEEEEecccceE
Q 002264 847 MSATGGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (945)
Q Consensus 847 a~~sd~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~ 907 (945)
|+++.+.|.|||.++..++..... |-..|+.++|++ ||..|+..+.||...+-.++..++
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 888899999999998888776654 778899999999 999999999999888877776553
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=3.1e-17 Score=166.62 Aligned_cols=272 Identities=15% Similarity=0.196 Sum_probs=189.0
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.|...|.|+.|+.+.. ++.+++ |..+.+|.-.+...... .+ +... .+. -..|-.+- +..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~--~~---~p~d--f~p---t~~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEV--AK---LPDD--FVP---TDMHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhhh--hh---CCcc--cCC---cccccccc-ccCCCCCcceE
Confidence 4667888999999887 566655 55666654333222110 00 0000 000 00110000 00000123578
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~ 501 (945)
+.++.||.+.+.+-. ++.-+ ...+|.+.|.+-.|+|||. -|+|+|+||.|++|..+|-...++.....+|+|++
T Consensus 79 ~i~s~DGkf~il~k~-~rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 79 LICSNDGRFVILNKS-ARVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEEcCCceEEEeccc-chhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 888999999998743 33333 5778999999999999999 89999999999999988887777777888999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
|.|+.+ ..+++.+ +.+.+=-+.....+.....|++-|.++.|++..+.++++|. |-..++||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 988654 4454443 45555566777778888999999999999999999999985 8899999964 55555555
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.|.- ++++++|.|+ ..++.++.. +++ +..+ ..+.|..++||+||..+++|+..|.+.+=
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~n-t~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSYN-TAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeeee-eee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence 5554 8999999999 566655532 233 2222 23478999999999999999998887653
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=162.92 Aligned_cols=295 Identities=12% Similarity=0.136 Sum_probs=211.9
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccc-cccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
.++|.+-|.++.||.+|+ +||+|+.|..+++|++...-.... +++. ..-..|...|.|++|....
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEEccCC
Confidence 467999999999999998 699999999999999864321111 1111 1123466899999999999
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHE 494 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~~~ 494 (945)
+.|.+|+.+++|.+.|+++.+.+... .-....+.|+.+..+|..+ .|++.+.++.|.+|| .... .+..+....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999999999999999997766421 1112345999999999987 899999999999999 4332 223334455
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
...+++.|+|.. ..+|++.+..+-+-+||++....... +......-.++.|+|.|..+++.-. ...-.
T Consensus 195 ~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~ 269 (609)
T KOG4227|consen 195 KNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPL 269 (609)
T ss_pred ccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCE
Confidence 667888898874 47899999999999999887554321 1111223357889999999988754 44456
Q ss_pred EEeCCCCce-eeEeccccC-----cceEEEEEcCCCCEEEEEECCCcEEEEECCCCe-----------------------
Q 002264 568 EWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----------------------- 618 (945)
Q Consensus 568 iwd~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------- 618 (945)
+||+.+.++ +..+..... ..+.+++|..+ ..+++|+.+-.|++|.+....
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 788877443 333331111 12455677655 348999999999999875311
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.+..+.+| ..-++.|.|+|...+|++.+-...++||...
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 12344444 4478999999999999999999999999763
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=4e-18 Score=158.20 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=198.1
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-CCCccEEEEEE
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAW 414 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~ 414 (945)
+.+.+ +|.+.|+|+.|-.+++ |.+|..-|.|++|++++.+.... +. .|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 33433 5999999999999986 88999999999999998765421 33 46788999988
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-cEEEEe-C---------C
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWE-L---------S 483 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-~i~vwd-~---------~ 483 (945)
-|+ ..|.+-+.|+.+.+|++..+..+. -|.-.+.++-|++.. ++..+... ..-.++ . -
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEE------Eeeeeccccccccce----eccCCCcchhheecCCcccchhhhhcc
Confidence 887 567788899999999998754332 355556666665431 11111111 111222 1 0
Q ss_pred CceEEE--e----cCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccCCCeeE----------EecCCCCeEEEEEE
Q 002264 484 GRKLFN--F----EGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLY 546 (945)
Q Consensus 484 ~~~~~~--~----~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~ 546 (945)
+..... . .+..+.+.+..+..... .-++++|-++|.+.+||+.++..+. ....+..++.++.+
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 111111 1 12334566665433222 2356778889999999999874443 33446668899998
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCC--ce-eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEG--TI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
.+.-..=++++. +..+..|.+... .+ +.......+..+..+.+-||++.++++|-|+.|+||+.++..++..+
T Consensus 214 as~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 214 ASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred chhhcCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 876655566654 667778877542 21 22222223335777899999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
..|.. .|++++|+|+...+|.++.|++|.+|++
T Consensus 290 kyHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98864 8999999999999999999999999986
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.4e-18 Score=178.43 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=188.0
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEcc-----CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
.+..|...|..++|.|....|++|+.||++++|+++ ....+..+.++.+|.++|.|++..++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 466799999999999999999999999999999993 2334566778999999999999999999 899999999
Q ss_pred cEEEEe-C------CC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEE
Q 002264 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCT 542 (945)
Q Consensus 476 ~i~vwd-~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~ 542 (945)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... ...-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999994 1 11 2346778999999999998865 5699999999999998765544 222222 22234
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++.+-...-....++. ..+.-.+++.........+..... ..+..+..+|.+...+++..|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4444332211222111 022222333444433333332111 2356678889999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.++.....+.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 999988877654 8999999999999999999999999998655
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=185.67 Aligned_cols=280 Identities=17% Similarity=0.260 Sum_probs=215.0
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.++++|-..|+|++|...|.| +++|+.|..|+||...++.++.. ..||++.|+.++.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~ 243 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSN 243 (1113)
T ss_pred HHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchh
Confidence 346789999999999999996 99999999999999999888754 7899999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe----cC-
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EG- 492 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~- 492 (945)
..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||..-..+... ..
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcc
Confidence 9999999999999999999997776 78899999999999985 3678899999999332211111 11
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~ 571 (945)
...-+.++.| ..++..+++++.|+.-..|.+.... .+...+.-+..+.|-. +.+++- .+..+.+|++
T Consensus 315 ~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl 382 (1113)
T KOG0644|consen 315 EKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNL 382 (1113)
T ss_pred cccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeeec
Confidence 1233444544 3355678999999998888554211 1111122222222322 333333 2778899999
Q ss_pred CCCceeeEeccccCcceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+|...+...+|.. .+..+.++|-...+ .+++.||...|||+-.|.+++..... + ..+....||+||..++...+-
T Consensus 383 ~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred ccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCC
Confidence 99999999999887 78889999966544 56889999999999999888877643 3 367888999999999998888
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
|.+.|.....+
T Consensus 460 gql~i~g~gqs 470 (1113)
T KOG0644|consen 460 GQLYILGTGQS 470 (1113)
T ss_pred CceEEeccCCC
Confidence 99999876544
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.3e-18 Score=175.70 Aligned_cols=267 Identities=14% Similarity=0.219 Sum_probs=192.6
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
...|.+.|+.++|.|... .|++++.||++.+|+++....-....+ .+...+.+|.++|.|+++++++.
T Consensus 290 l~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred eecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCce
Confidence 334999999999999988 599999999999999944221111111 12245889999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCc-------ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC
Q 002264 420 YVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 492 (945)
.+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++++.||+++.|+..+....+|..
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCC
Confidence 99999999999999664221 1112225779999999999999888 79999999999999933333344433
Q ss_pred CC--CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------CCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 493 HE--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 493 ~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
.. +.-.++.+..+ .-...++...-+.-.++++........+... ...+.-+.++|.+...+++.. +
T Consensus 436 ~~e~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d 510 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----D 510 (577)
T ss_pred ccccCCcceEeeccc-hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----C
Confidence 22 22334443221 1122222222333334444444444333221 125677889999988888875 8
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
+.|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....+
T Consensus 511 ~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred Cceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9999999999999999888877 8999999999999999999999999999877766555443
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=166.53 Aligned_cols=239 Identities=14% Similarity=0.153 Sum_probs=162.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ -.+|...|.++.|-|....-+++||..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 458899999999999999999999999999999999876655543 248999999999999765558999999999999
Q ss_pred EeCCC-----------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE----------EecCCC
Q 002264 480 WELSG-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPG 538 (945)
Q Consensus 480 wd~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~ 538 (945)
+|.+. .....+..|...|..++..|.+ ...+.++++||+++-+|++....-. .+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99331 2345567788889988876643 2789999999999999998632111 111111
Q ss_pred CeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceEEE-EEcCCCCEEEEEECCCcEE
Q 002264 539 HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVV-QFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 539 ~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~~~~dg~i~ 610 (945)
-...++.++|... +|++++. +...++||.+... ..+..... ....++ -|+|.+- ...+|.+
T Consensus 201 ielk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~- 269 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL- 269 (758)
T ss_pred heeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc-
Confidence 2567899999665 5555554 8889999964321 11111100 001111 1233210 1111111
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
... ...++-++|+|+|.-|.+.-....|+++|+..++.....
T Consensus 270 ---------~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 270 ---------DRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ---------ccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 013577899999988887777779999999877544433
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.5e-16 Score=142.78 Aligned_cols=280 Identities=18% Similarity=0.239 Sum_probs=194.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|.+-+++|.+++ |+.|+.+|+|.+..+.+--.-.. .+..........+|.++|+.++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 5667789999995 89999999999998764211100 000111112357899999999998 55777775
Q ss_pred CCCcEEEEEccCCcc---cccce--eecccc-----ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 426 TKHLIQLYSYAGSND---LRQHS--QIDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~---~~~~~--~~~~h~-----~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
||.|+-|....-.. .+... ....|. ..|+++-..|..+ -++.++.|+.++-|| .+|+..+++++|+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 11100 111232 3688999998877 455555799999999 9999999999999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC----------CCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+.|.++.-... + ..+++|++||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 99999986332 2 46889999999999999999888765442 225555554 556888875 67
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-CE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~ 643 (945)
.+.+|.++..++...|.-.. .+..+.|.. ..+++++..+.+.-|.+ +|......+...+ .+.+..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCceEE
Confidence 89999999999888876543 466667764 57888888889999987 4555554544433 45555555433 34
Q ss_pred EEEEECCCcEEEE
Q 002264 644 LAVTTADNGFKIL 656 (945)
Q Consensus 644 l~~~~~dg~i~iw 656 (945)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455555566554
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=4.7e-17 Score=151.12 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=197.4
Q ss_pred eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcE
Q 002264 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (945)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 609 (945)
+.+.+..+...++++.|-.+++ |+++.. .|.+.+|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3445567777899999988777 666653 8899999999999888888776667888888786 678888999999
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC-cEEEEECCCCccccccccCCccccccCcceeeeeccc
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~ 688 (945)
.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+...+ .....+ +.-.
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~-------g~~t------- 137 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG-------GDTT------- 137 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhcc-------Cccc-------
Confidence 9999987655443322 34555554421 11111110 111111111100 000000 0000
Q ss_pred ccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceE
Q 002264 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (945)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 768 (945)
.+++-+-.. .+..+.+.
T Consensus 138 ------------------------------------------------qv~i~dd~~---------------~~Klgsvm 154 (323)
T KOG0322|consen 138 ------------------------------------------------QVQIADDSE---------------RSKLGSVM 154 (323)
T ss_pred ------------------------------------------------eeEccCchh---------------ccccCcee
Confidence 011111000 00223333
Q ss_pred EEEEec-CCC--eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 769 RLLYTN-SAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 769 ~l~~s~-dg~--~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
+..+.. +++ .++++..+|.+.+||+....... +......+...... |..+|.++.|.+.-..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-------------~~~~~~kv~~~~as--h~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-------------QLPQSSKVESPNAS--HKQPVLSLDYASSCDR 219 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceee-------------ccccccccccchhh--ccCcceeeeechhhcC
Confidence 333221 232 24566678999999986542111 11111111111222 8999999999876555
Q ss_pred EEecC-CCeEEEEeccCc--eE--EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeE
Q 002264 846 VMSAT-GGKISLFNMMTF--KV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~--~~--~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 920 (945)
=++|+ +.++..|+++.. .+ .....-....|..+.+-| |++++|+++.|+.||||..++.+.+..++.|.+.|.+
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 56677 778999987642 22 122222345588899999 9999999999999999999999999999999999999
Q ss_pred EEecCCcceeeeecCCceEEEEec
Q 002264 921 LAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 921 l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++|+||...+|++|.|++|.+|+|
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999997
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.9e-16 Score=172.58 Aligned_cols=269 Identities=15% Similarity=0.204 Sum_probs=203.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|++.+. ..+...+.-...|+|++|+|...+++|.|..+|+|.+||+..+........ ......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------ccccccCC
Confidence 8888876 788889999999999999999988999999999999999988765311111 12245699
Q ss_pred ccEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccceeec---------cccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 407 ISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 407 ~~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
.+|+.+.|-.+.. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .|+.|+.+|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 9999999987544 49999999999999886543311110110 12236899999998776 789999999
Q ss_pred cEEEEe---CCCce------EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-CCCeeEEecCCCCeEEEEE
Q 002264 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 476 ~i~vwd---~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~ 545 (945)
.|.--+ .+... ...+..|.++|+++.++|-.. ..+++++ |.++++|... ...+...+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 988744 22222 345667899999999988754 4455555 9999999877 5566666777777899999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
|||-...++++.. ++|.+.+||+... .++.+.... ....+.+.|++.|+.+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877776653 6999999998753 344444333 33677788999999999999999999999864
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.8e-17 Score=155.47 Aligned_cols=274 Identities=12% Similarity=0.150 Sum_probs=194.0
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CCCEEEEEECCCcEEEEEcc
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g~~las~~~dg~i~vwd~~ 436 (945)
.+|++-..|+|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58888889999999999988763 3778899999999987 46789999999999999999
Q ss_pred CCcccccceeecccc-ccEEEEEEecCCCeeEEEEEe----CCCcEEEEe-CCCce-EEEe-cCCCCCEEEEEeeecCCc
Q 002264 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s----~d~~i~vwd-~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 508 (945)
+......+ .+.+|. .+..+++..-.++ ++++|. .|-.|.+|| ...+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87655433 344555 5677777766666 677775 356799999 54443 4443 5799999999999984 5
Q ss_pred cEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCCC-CEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
++|++|+.||.|.+||+...... .....+...|.++.|..++ +.+.+.+. .....+|++..+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 89999999999999998765332 2333456679999999887 34555554 7789999999887655444321
Q ss_pred Cc---------ceEEE-EEcC-CCCEEEEEEC-CCcEEEEECC---CC---eeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 585 KK---------SNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NV---NILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 585 ~~---------~~~~~-~~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
-. .-..+ +.+| +...++.++. -|...++-+. ++ ..+..+.+ ++..-|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 00011 2223 3344454443 5666655443 23 23334433 23456889999989999999
Q ss_pred EECCCcEEEEECCC
Q 002264 647 TTADNGFKILANAI 660 (945)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (945)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=8.9e-16 Score=144.68 Aligned_cols=284 Identities=14% Similarity=0.261 Sum_probs=203.8
Q ss_pred EEeecCCCcEEEEEEe--CCCCeEEEEEeC----cCcEEEEEcC--CCCcccccccccccccccCcccccccccCCCccE
Q 002264 338 AVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fs--p~g~~llasgs~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (945)
+....-.-.+.++.|| |+.++.||.||. .+.|.|-.+. +++.+.. .--.|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCc
Confidence 4444555689999999 566667999874 2455555443 3333321 113588999
Q ss_pred EEEEEcCCC-----CEEEEEECCCcEEEEEccCCc-cccccee-----eccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 410 SRVAWSPDG-----NYVGVAFTKHLIQLYSYAGSN-DLRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 410 ~~i~~s~~g-----~~las~~~dg~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+.+.|.|+. ++||+++ ..+++|.+...+ .+..... -..+.+++++..|+.-... ++.++|-|-+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 999999986 3566654 369999987422 1111111 2246779999999986665 899999999999
Q ss_pred EEe-CCC---ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCC--CCeEEEEEEcCC-C
Q 002264 479 VWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSAD-G 550 (945)
Q Consensus 479 vwd-~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~~~~s~~-~ 550 (945)
||| .+| .....+..|...|+.++|... .-+.+++.|.||.||+||++..+... .++.+ ..+...++|++. -
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 554 346778899999999999863 45789999999999999998755432 23322 347788899884 4
Q ss_pred CEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCC-CCEEEEEECCCcEEEEECCCCe------eEEE
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVN------ILTS 622 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~ 622 (945)
+++++... ....|.+.|++.. .++..+++|.. .|+.++|.|. ..+++++|.|..+.+||+...- ++..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 56666554 3667999999875 57788889887 8999999996 4788999999999999997532 2222
Q ss_pred eecCCCCCCccEEEEcC-CCCEEEEEECC
Q 002264 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTAD 650 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp-~g~~l~~~~~d 650 (945)
.. ..+.|+.+.|++ .+.+++.+...
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEecC
Confidence 22 234799999997 66788877643
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.2e-16 Score=169.62 Aligned_cols=304 Identities=18% Similarity=0.327 Sum_probs=210.3
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC---CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
+-..+.|+|-.. .++++...-.|+||| ..++.+..|..+ ...|+.+++....|..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888777 788888778999999 899988877654 44688888877778889999999999999953211
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 608 (945)
. | ....++++.. .-++. ..+..+ .-..+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw~------------~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAWS------------SLSDQ----LPGARG-TGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEeec------------ccccc----CccCCC-CCeeeehhhhCCeEEecCCeeE
Confidence 0 0 1223443321 11111 111111 1234667777778888888899
Q ss_pred EEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
|+|||......+..+..... ..|+++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999999888888776543 3566665443 5799999999999999998754210
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccc-
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK- 766 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~- 766 (945)
.-|.+|.- |...
T Consensus 1245 ------------------------------------------------s~v~~~R~-------------------h~~~~ 1257 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYRE-------------------HNDVE 1257 (1387)
T ss_pred ------------------------------------------------ccceeecc-------------------cCCcc
Confidence 11222221 3333
Q ss_pred -eEEEEEecCCCe-EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 767 -VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 767 -v~~l~~s~dg~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
|..+.+.+.|-. |++++.+|.|++||+........-.. +.-|+ ..+..+++.++++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-----v~~~~---------------yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-----VAHWE---------------YGSALTALTVHEHAP 1317 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-----eeccc---------------cCccceeeeeccCCC
Confidence 777778776654 99999999999999865311100000 00111 123589999999999
Q ss_pred eEEecCCCeEEEEeccCceEEEEecCC-------CCCeeEEEeecCCCceEEEeecCceEEEEecccce
Q 002264 845 YVMSATGGKISLFNMMTFKVMTTFMSP-------PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (945)
Q Consensus 845 ~la~~sd~~i~iwd~~~~~~~~~~~~h-------~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~ 906 (945)
.+|+|+.+.|+||++. |+.+..++.+ .+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1318 iiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1318 IIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 9999999899999986 4554554432 24589999999 88899999999999999877543
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.8e-16 Score=159.30 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=166.6
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-- 416 (945)
.+.+|.+-|.|++|+.+|. +|++||.|-.+.|||....+.++ .+-+||...|.|+.|-|
T Consensus 45 eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYT 105 (758)
T ss_pred hhccccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccC
Confidence 4557999999999999999 79999999999999998766654 34679999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCc-------ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceE
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL 487 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~ 487 (945)
+.+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .|.++++||+|+-+| ... .+-
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCC
Confidence 57789999999999999998522 12223356689999999999999965 899999999999999 331 111
Q ss_pred E---------EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 488 F---------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 488 ~---------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
. .+...--...|+.++|.. ..+|++|+.|-..++||.+....... ... . +.++|--
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~--s~~--~--~~~~pp~-------- 249 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFR--SDG--T--MNTCPPK-------- 249 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCC--CCc--c--ccCCCCc--------
Confidence 1 111222356788888874 48999999999999999643222111 100 0 0011100
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
..+.+..|-...-+..+-...+.-...+-+.|+|+|.-+++.-..-.|+++|+..++....+
T Consensus 250 ---~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 250 ---DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ---ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 01111111111000000000000013556889999988877666678999999887655443
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=153.54 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=193.6
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CC-CeEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PG-HWCT 542 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~-~~i~ 542 (945)
.++++-..|.|++|| .+++.+..++++...++.+.|........+.+++.||+|++||++.......+.. +. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 677788899999999 8899999999999999999998754557899999999999999998776554433 32 3567
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce-eeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe--
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-- 618 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 618 (945)
+++.+-.++.+++++.-.+.+..+.+||++..+. +..+...+...|+++.|+|.. +.|++|+.||-|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667777777765444577899999998765 555544444489999999964 789999999999999987543
Q ss_pred --eEEEeecCCCCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccc-ccceec
Q 002264 619 --ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS-ASSAVS 694 (945)
Q Consensus 619 --~~~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~-g~~l~~ 694 (945)
++.++. +...|.++.|..++ +.|.+-+..++..+|+++.+.... .+........ .....+ -.+++-
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~------d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSAD------DLRKEDNCDYVIN 271 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhh------hHHhhhhhhheee
Confidence 222332 23368999999877 457788889999999998874222 1211100000 000000 001100
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccc-cCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEe
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV-DDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 773 (945)
+. ...+....+. ++.-++..++-+................ .+|..-|.++.|.
T Consensus 272 ~~-------------------------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 272 EH-------------------------SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFD 325 (376)
T ss_pred cc-------------------------cCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhh
Confidence 00 0011122222 2223555555554322222222222222 3466778888898
Q ss_pred cCCCeEEEeeecCeEEEEee
Q 002264 774 NSAVGLLALGSNGVQKLWKW 793 (945)
Q Consensus 774 ~dg~~l~~~~~dg~i~lw~~ 793 (945)
..+..+.++|.||.+.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 88999999999999999975
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=4.8e-15 Score=159.52 Aligned_cols=283 Identities=11% Similarity=0.130 Sum_probs=173.0
Q ss_pred EEEEEcCCeEEEEEccCCCe---eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCce--eeEecccc
Q 002264 511 IFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI--KRTYAGFR 584 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~--~~~~~~~~ 584 (945)
+++...++.|.+||+.+... ...+. .......++++|++++|++++. .++.|..|++. +++. ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~-- 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPL-- 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecC--
Confidence 44457789999999964322 22332 2345678899999999988764 36789999986 3433 222221
Q ss_pred CcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-Ce---eEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 002264 585 KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~---~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~ 658 (945)
......++++|+++++++++ .++.|.+|++.+ +. .+..+.. ......++++|+|+++++++ .++.|.+||+
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG---LEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC---CCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 12456799999999999887 588999999974 32 2222221 12467889999999886655 4689999999
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
.+...+..................++|+|+|++++ ++...+++|
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly------------------------------------v~~~~~~~v 199 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY------------------------------------CVNELNSSV 199 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEE------------------------------------EEecCCCEE
Confidence 76422211000000000112245678888888775 233335888
Q ss_pred cccccceeec-CCcceee-ecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccC
Q 002264 739 KPWQLAEIVD-SGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (945)
Q Consensus 739 ~vw~~~~~~~-~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (945)
.+|++..... ......+ ..+....+......+.++|+|++++++.. ++.|.+|++..... ..
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~----~~----------- 264 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS----VL----------- 264 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC----eE-----------
Confidence 8898863110 0111111 11211112223456899999999988855 68999998753210 00
Q ss_pred CCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc
Q 002264 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM 860 (945)
Q Consensus 816 ~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~ 860 (945)
+...... -......++++|||++|++++ +++|.+|+++
T Consensus 265 ---~~~~~~~----~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 265 ---SFEGHQP----TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ---EEeEEEe----ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 0000000 012345789999999999887 6789999874
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=177.93 Aligned_cols=284 Identities=16% Similarity=0.241 Sum_probs=217.8
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
.+.++.+.+|.+ .|.|+.|...|.++++|+.|..++||.++++.++....+|.. .|+.++.+.+..++++++.|..|
T Consensus 180 mk~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 180 MKNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceE
Confidence 344566778877 799999999999999999999999999999999999887755 89999999999999999999999
Q ss_pred EEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccC
Q 002264 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (945)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (945)
++|.+.++ ..+..+.+|+. .|++++|+|- .+.+
T Consensus 257 rvWrl~~~-~pvsvLrghtg-----avtaiafsP~-----------------------------------------~sss 289 (1113)
T KOG0644|consen 257 RVWRLPDG-APVSVLRGHTG-----AVTAIAFSPR-----------------------------------------ASSS 289 (1113)
T ss_pred EEEecCCC-chHHHHhcccc-----ceeeeccCcc-----------------------------------------ccCC
Confidence 99999998 67777877765 5889999876 3566
Q ss_pred CCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
.||++++||..-. +.... .-|........+.++.|...+..+++++.+++-..|.++... |
T Consensus 290 ~dgt~~~wd~r~~--~~~y~--prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~ 350 (1113)
T KOG0644|consen 290 DDGTCRIWDARLE--PRIYV--PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W 350 (1113)
T ss_pred CCCceEecccccc--ccccC--CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h
Confidence 7799999998611 11111 111112244667788888889999999999888777543211 1
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCC-ceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg-~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg 891 (945)
+...+.-+.++.|- .+.+++- +-.+++|++.+|...+.+.+|..++..+.++|.+.++..++
T Consensus 351 ----------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 351 ----------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred ----------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 12222222222232 2334443 56799999999999999999999999999999888889999
Q ss_pred ecCceEEEEecccceEEEEe-cCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 892 TEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 892 ~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
+.||...|||+-.|..++.. .+| +.+..-+||+||..++....-|.+.|..
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEec
Confidence 99999999999998776654 455 4566679999999998887778777653
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2.5e-14 Score=139.99 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=183.6
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~ 482 (945)
...+..+.|+.+...|..|+.|| -++|+.+.-.... ........|..+-|+.. +++..+.+ +.+++.+ .
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 44677788999999999999998 6888876543321 22223445777777754 44444433 4589999 6
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC---CCeEEEEEEcCCCCEEEEEeec
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.+..+..+. ...+|.++.++. +.|+++=.+. |.|||+++.+...++... ...+..+++++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 666666655 566788888754 4566655544 999999998887766543 334666667777778887654
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
...|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ |+||.+.+|+.+..+........|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2378899999999999999998887 8999999999999999998887 799999999999998765555578999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|++++|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999999754
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=2.4e-15 Score=164.05 Aligned_cols=249 Identities=16% Similarity=0.162 Sum_probs=182.9
Q ss_pred CCccEEEEEEcC-CCCEEEEEECCCcEEEEEccCCcc--cccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 405 h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~--~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
-...|.|+.|+| +..++|.|+.+|+|.+||+..+.. .... .....|..+++.+.|..+-...-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 677888999999999999988765 2111 123469999999999876442258999999999999
Q ss_pred eCCC--ceE-----EEec------CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEE---ccCCC-----eeEEecCCCC
Q 002264 481 ELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGH 539 (945)
Q Consensus 481 d~~~--~~~-----~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd---~~~~~-----~~~~~~~~~~ 539 (945)
+... .+. .... .....++++.|.+.. ...++.|+.+|.|.--+ ..... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8322 111 1111 123467888998764 47799999999987632 22211 1224556778
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (945)
+|+++.++|-+..++..+. |..+++|... ...++..+..+.. .+..++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998876665553 8999999988 6667766666655 699999999764 5566778999999998754
Q ss_pred e--eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 618 N--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 618 ~--~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
. ++...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 34444333 346788899999999999999999999999644
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2e-14 Score=154.66 Aligned_cols=272 Identities=13% Similarity=0.176 Sum_probs=176.6
Q ss_pred eEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEEc
Q 002264 358 TLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSY 435 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd~ 435 (945)
++.++...++.|.+|++.+ ++.... ..+. +.+....++++|++++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLL-----------------QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeee-----------------eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557799999999964 322110 1121 235577899999999987764 4788999999
Q ss_pred cCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-C-CCc---eEEEecCCCCCEEEEEeeecCCcc
Q 002264 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 436 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~-~~~---~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
+....+....... ..+....++|+|+++ ++++++ .++.|.+|+ . .+. .+..+. +.....+++++| +++
T Consensus 65 ~~~g~l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p--~g~ 138 (330)
T PRK11028 65 ADDGALTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP--DNR 138 (330)
T ss_pred CCCCceEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC--CCC
Confidence 7322222111221 233567899999999 555544 488999999 3 232 233332 223456677766 556
Q ss_pred EEE-EEEcCCeEEEEEccCCCeeEE-----ec-CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC--Cc--eee
Q 002264 510 FIF-STAIDGKIKAWLYDTMGSRVD-----YD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GT--IKR 578 (945)
Q Consensus 510 ~l~-s~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--~~--~~~ 578 (945)
+++ +...++.|.+||+++...... .. ..+.....+.|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 455679999999986432211 11 12344678999999999988763 478999999873 32 233
Q ss_pred EeccccC-----cceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe----eEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 579 TYAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 579 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
.+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|||++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3322111 1123588999999999986 47899999986432 22222221 1456899999999999887
Q ss_pred C-CCcEEEEECC
Q 002264 649 A-DNGFKILANA 659 (945)
Q Consensus 649 ~-dg~i~iw~~~ 659 (945)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=150.13 Aligned_cols=305 Identities=13% Similarity=0.192 Sum_probs=203.1
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEE
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (945)
-.+|||+|++++++. +-.+.+-|..+-+..+.|..-. .|.-+.|..+..+++++ ..|+.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 5578888988877776666543 35567888888777765 478899999998887777
Q ss_pred EeecCCCCCCccEEEEcCCCCEEE-EEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
.++.. ..++.++.|||||+.+. +...+-.|.+|.+.+..-..-... +..+..++|+|||++.+....-+
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------K~~~kg~~f~~dg~f~ai~sRrD- 155 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------KTNVKGYAFHPDGQFCAILSRRD- 155 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-------ccCceeEEECCCCceeeeeeccc-
Confidence 77543 44899999999996555 555688999999987632222111 12356789999999875222111
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
| +-.+.- -.-+-|.+- +.+.. ..-..+++.|+|||..++
T Consensus 156 C-------------------------kdyv~i---~~c~~W~ll-----~~f~~--------dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 156 C-------------------------KDYVQI---SSCKAWILL-----KEFKL--------DTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred H-------------------------HHHHHH---HhhHHHHHH-----HhcCC--------CcccccCceECCCCcEEE
Confidence 0 000000 000122221 11111 223457889999999887
Q ss_pred Eeee--cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEE
Q 002264 781 ALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (945)
Q Consensus 781 ~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iw 857 (945)
+-.+ +..|..|. -.-.+..++|||-++++|+|+ |+.++|.
T Consensus 195 Vwd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 195 VWDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred Eecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeeccchhhhhh
Confidence 6544 22222221 224578899999999999999 8888876
Q ss_pred eccCceEEE------------------------------------------------------------EecC------C
Q 002264 858 NMMTFKVMT------------------------------------------------------------TFMS------P 871 (945)
Q Consensus 858 d~~~~~~~~------------------------------------------------------------~~~~------h 871 (945)
|--+.+... .++. .
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 532222111 1111 1
Q ss_pred CCCeeEEEeecCCCceEEEeecC--ceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 872 PPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~d--g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.-.+.-++||+ |..++|+-... +.+-+||++..++...+. ...+|....|.|....|+.+.....+++|..
T Consensus 318 k~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 318 KCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred ccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 12366799999 89899887543 579999999887666655 5678999999999988888777777899864
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=2.8e-15 Score=141.21 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=169.7
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-------CcEEEEe-CCC---------ceEEE
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------KLIKVWE-LSG---------RKLFN 489 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-------~~i~vwd-~~~---------~~~~~ 489 (945)
|..|.+.+++.+...-....+..|.+.|+.++-+|-.+. +|+|+..+ ..+.||. ... +++..
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 678888888765544444467789999999999998876 67776542 2467898 222 12233
Q ss_pred ec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecC-----CCCeEEEEEEcC--CCCEEEEEeecC
Q 002264 490 FE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDA-----PGHWCTTMLYSA--DGSRLFSCGTSK 560 (945)
Q Consensus 490 ~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-----~~~~i~~~~~s~--~~~~l~~~~~~~ 560 (945)
+. .+-+.|.|+.|.| ++..+++-. |..|.+|+++....+. .+.. +....++-+|+| +|..+++.+
T Consensus 118 Ldteavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--- 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--- 191 (370)
T ss_pred CCHHHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC---
Confidence 33 4556899999988 456676665 8899999998876632 2221 234678888998 888888876
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++++..||+++.+....+...+...+..+.|+|+.. +|++|+.||.|++||.+. ..++..+..|.| .|.+|.|+
T Consensus 192 --d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn 267 (370)
T KOG1007|consen 192 --DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFN 267 (370)
T ss_pred --CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEec
Confidence 899999999998888777776666899999999865 567788999999999875 567788877777 99999999
Q ss_pred C-CCCEEEEEECCCcEEEEECCC
Q 002264 639 K-EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 639 p-~g~~l~~~~~dg~i~iw~~~~ 660 (945)
| ..+++.+|+.|..|.+|....
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred CccceEEEecCCCceeEEEeccc
Confidence 9 457888999999999998754
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-15 Score=148.18 Aligned_cols=254 Identities=8% Similarity=0.092 Sum_probs=180.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC---cccccceeec-cccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS---NDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~---~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
+-+.+|.+.|.++.||.++++||+|+.|..+++|+++.. +..+.+.... .|.+.|.|++|...+. .+++|+.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcc
Confidence 447789999999999999999999999999999998632 1112222222 4668999999998777 899999999
Q ss_pred cEEEEe-CCCceEEEecC--CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---eEEecCCCCeEEEEEEcCC
Q 002264 476 LIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~ 549 (945)
+|...| .+.+.+..+.. ..+.|+.+..+|.. +.+++.+.++.|.+||.+.... .+.....+....++.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999 66666655542 24589999999873 6899999999999999987652 2333334556788999997
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCce-eeEec---cccC--cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE-EE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYA---GFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-TS 622 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~---~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 622 (945)
...|+.... ..+-+.+||.+.... +.... +... .....+.|+|+|+.|++.-....-.+||+.+..+. ..
T Consensus 206 ~P~Li~~~~---~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 206 TPALILVNS---ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CceeEEecc---ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 766554433 266688999876432 21111 1111 11245789999999988776666667888764432 22
Q ss_pred eecC----CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 623 TDAE----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 623 ~~~~----~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+... .....+.+++|..|- .+++|+++-.|.+|.+...
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 2211 112346778887654 4899999999999988543
No 200
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.1e-17 Score=175.84 Aligned_cols=341 Identities=17% Similarity=0.209 Sum_probs=220.8
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCCcccccch
Q 002264 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPTAAAANAN 248 (945)
Q Consensus 169 ~rL~~ll~q~~~~q~~~c~~~~~~~~~~~l~~~h~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 248 (945)
-.|..|+.|+++.||.+|++|+++++++|||..|+|+++..-+ ..|-|....... ..+. +
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~-~ap~N~t~Rl~~--rel~------~----------- 1072 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLL-EAPLNMTGRLGT--RELQ------S----------- 1072 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHh-hcchhhhhcccc--hhhc------C-----------
Confidence 3599999999999999999999999999999999999955111 122221111100 0000 0
Q ss_pred hhhhhcccCCCCCccccccccCCCCCCCCCccccccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeecCCCCccc
Q 002264 249 ALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTW 328 (945)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 328 (945)
.-..+.-...+..-+..++++
T Consensus 1073 ------------------------------------------~y~gV~g~~~dr~~IFSRFr~----------------- 1093 (1516)
T KOG1832|consen 1073 ------------------------------------------FYSGVHGNRRDRQFIFSRFRS----------------- 1093 (1516)
T ss_pred ------------------------------------------cccccccCcccchhhHhhccc-----------------
Confidence 000011111122222333333
Q ss_pred cCCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc
Q 002264 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (945)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (945)
.+.++ |...-+|++||-+.+. |++|+..|.|+++++.+|..... ..+|..
T Consensus 1094 ---------w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~S 1144 (1516)
T KOG1832|consen 1094 ---------WRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQS 1144 (1516)
T ss_pred ---------chhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------cccccc
Confidence 33444 7789999999999885 99999999999999999987643 667999
Q ss_pred cEEEEEEcCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 408 SVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
+|+.+.-|.||..+++.+.-. ...+|++.+- .....++ ..-.++.|+.... .-+.|.....+.+|| .++
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf----~ed~~vkFsn~~q--~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSF----DEDKAVKFSNSLQ--FRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccc--cCccccc----cccceeehhhhHH--HHHhcccccceEEEecccC
Confidence 999999999999887765433 4789998652 1211122 2356788987755 334455456788999 888
Q ss_pred ceEEEe-cC---CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 485 RKLFNF-EG---HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 485 ~~~~~~-~~---~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
..+.++ .+ ....-++..|+|.. .+++ .|| .+||++..+.+..+..-.. -..-.|+|.|..++..+
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---
Confidence 776653 22 11223566777753 4444 344 4699998876665543332 12235999999999875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--CC---------------CcEEEEECCCCeeEEEe
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--ED---------------SQIKFWDMDNVNILTST 623 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~ 623 (945)
.|||+++.+.++....... +.+.|+..|+.++..- .| ...+-|+..+...+.++
T Consensus 1286 ------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi 1356 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI 1356 (1516)
T ss_pred ------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee
Confidence 5799999998887766443 5577888887766532 00 12445566666666666
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
.... ++..++-+|...++++.-
T Consensus 1357 ~v~R---~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1357 PVDR---CLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred eccc---chhhhhcCCccceEEEEe
Confidence 6543 567777777666766553
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=5.5e-15 Score=165.08 Aligned_cols=256 Identities=11% Similarity=0.040 Sum_probs=181.9
Q ss_pred cccCCCccEEEEEEcCCC-CEEEEEECCCcEEEEEccCC----cccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g-~~las~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
.+..|+..|..++.++.. .++++|+.||+|++|+...- ...+...++..-...+.++...+.++ .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 367789999999998855 99999999999999998632 22233334444577899999999999 789999999
Q ss_pred cEEEEe-CC--Cce-----EEEecCC-CCCEEEE-EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe--cCCCCeEEE
Q 002264 476 LIKVWE-LS--GRK-----LFNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTT 543 (945)
Q Consensus 476 ~i~vwd-~~--~~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~ 543 (945)
.|++.+ .. ... ......+ .+.+.++ ++........++.+...+.|..||++.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998 22 211 1111112 2334333 3433322237888999999999999887666544 344568999
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC---CCEEEEEE--CCCcEEEEECCCCe
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVN 618 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~~ 618 (945)
++.+|.+.+++.|+. .|.+.+||++-+.++..........+..++.+|- ....++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999986 8899999999998888776555556666666553 34555554 57889999999997
Q ss_pred eEEEeecCCCC-----------------CCccEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 619 ILTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 619 ~~~~~~~~~~~-----------------~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+...+-..... -......+...+.++.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 76666443110 011223333456788999999999999997763
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.6e-15 Score=164.78 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=191.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+....-..+.|+|-...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 44455567788999999999999877889999999988766433222345579999987655444889999999999998
Q ss_pred --CCC----ceEEEecCCCC-----CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcCC
Q 002264 482 --LSG----RKLFNFEGHEA-----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSAD 549 (945)
Q Consensus 482 --~~~----~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~ 549 (945)
..+ +.+..+.+-.+ .-..+.+.+.....+|+++|.-..|+|||.+.......+.... ..+++++-+..
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 332 12222222111 0111222233333567777778999999998877776655443 36677665543
Q ss_pred -CCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccCc-ceEEEEEcCCCC-EEEEEECCCcEEEEECCCCeeEEEe
Q 002264 550 -GSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKK-SNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 550 -~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
|+.+++|.. ||.|++||.+... .+..++.|... .|..+.+.+.|- .+++|+.||.|++||++.......+
T Consensus 1220 ~gn~i~AGfa----DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1220 HGNIIAAGFA----DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred CCceEEEeec----CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 577777665 9999999988643 45666666652 266788888664 5999999999999999874332222
Q ss_pred --ecCCCCC-CccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC--ccccccCcceeeeeccccccee
Q 002264 624 --DAEGGLP-NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP--PFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 624 --~~~~~~~-~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
..+...+ ..+++..+++...+|+|+. +.|+||++.... +..+..+ -.....+.+.+++|+|..-.+|
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~--l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ--LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh--hcccccCcccccCcCCCcceeeecchhHhhh
Confidence 2222112 4899999999999999998 899999996542 2222211 1112234567888888766653
No 203
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.4e-14 Score=151.16 Aligned_cols=463 Identities=13% Similarity=0.152 Sum_probs=288.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC----------CCeeEEEEEeCCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----------NKLLCVVTCGDDK 475 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----------~~~~~l~s~s~d~ 475 (945)
...-.++.|+|.| ++|.|+. ..|.+.|..+-+.+. .+..|...|+.+.|.|. ...++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788999877 6666665 468888887766555 67789999999999863 2345788899999
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCc--cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC-CCC
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 551 (945)
.|.+|| ..+..+..+..|..++..++|.+..+. .+|++-....++.+|+..+++....+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888889999999999999876543 4677778889999999999999999888887788899988 555
Q ss_pred EEEEEeecCCCCceEEEEeCCC-------CceeeEeccccC----------------cc--------eEEEEEcCCCCEE
Q 002264 552 RLFSCGTSKDGDSFLVEWNESE-------GTIKRTYAGFRK----------------KS--------NGVVQFDTTQNHF 600 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~-------~~~~~~~~~~~~----------------~~--------~~~~~~~~~~~~l 600 (945)
.+...+. .|.+.+-+.-. ++..+.-..|.+ .. ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 5555543 55555544321 122211111111 00 1124678877777
Q ss_pred EEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC--CEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+.......+.++|++-..++.....+.+ .+.-+.+-|++ ..|++.-.||.+.+|--+.....+++...+-......
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 7777788899999999999988887765 45667777754 5788999999999997754322222211110000111
Q ss_pred cceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC-CCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM-DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 679 ~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
.+.++..... +........|. ...++.--.+|...+|++.++........-
T Consensus 324 Q~~~vr~m~~--------------------------~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-- 375 (1062)
T KOG1912|consen 324 QVHVVRPMEE--------------------------FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-- 375 (1062)
T ss_pred ceEEEeechh--------------------------cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc--
Confidence 1111111100 00111111122 223344445678888988753322211110
Q ss_pred CCCCCCccceEEEEEecC-----CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCC
Q 002264 758 PESTDTSSKVVRLLYTNS-----AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~d-----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 832 (945)
...-+..+.|... ...+...+.||. .+.|....... + ..
T Consensus 376 -----~iel~~pf~f~~~~~~v~k~~l~~LS~dg~-----------h~sGs~~~~~~-----p---------------~p 419 (1062)
T KOG1912|consen 376 -----SIELVLPFDFNLSTKLVGKTSLISLSDDGS-----------HSSGSTCVRMR-----P---------------MP 419 (1062)
T ss_pred -----cccccccccccCceeehhhccccchhhcCC-----------CCCCceeeecc-----c---------------Cc
Confidence 0001111111111 112333333331 11111111000 0 00
Q ss_pred ceeEEeecCCC-------ceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe---------ecCc
Q 002264 833 AVPCIALSKND-------SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG---------TEDS 895 (945)
Q Consensus 833 ~i~~l~~s~dg-------~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg---------~~dg 895 (945)
..+-..-.|.| .++|.|. .|+|.++|+.++...+.+..|++.|.++.|.. ..+++-.+ +.-+
T Consensus 420 ~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN 498 (1062)
T KOG1912|consen 420 ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRN 498 (1062)
T ss_pred ccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceee
Confidence 00001111111 3678887 79999999999999999999999999999986 55444322 2234
Q ss_pred eEEEEecccceEE--EEec-CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 896 TIHIYNVRVDEVK--SKLK-GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 896 ~v~vwd~~~~~~~--~~l~-~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.+.|-|+++|... +.++ ....+|+.+..|.-|+||+..-.|.-+.+||+
T Consensus 499 ~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 499 DLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred eEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence 5788899998532 2222 35678999999999999999999999999986
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.4e-15 Score=164.55 Aligned_cols=235 Identities=12% Similarity=0.093 Sum_probs=164.2
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~ 442 (945)
+..|.+||...... ..+..|...+.+++|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~--------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCc--------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 46899999865432 1255678889999999999999987654 369999998875322
Q ss_pred cceeeccccccEEEEEEecCCCeeEEEE-EeCCCcEEEE--eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCC
Q 002264 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG 518 (945)
Q Consensus 443 ~~~~~~~h~~~v~~l~~s~~~~~~~l~s-~s~d~~i~vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg 518 (945)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+.....+..+...+....|+| ||+.|+.++ .+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123333 44689999999 5554 4568876665 555555667777777788888877 556665544 678
Q ss_pred eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 519 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
..++|+++..........+.. ....|+|||+.++..+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 34677999988765433322 234578999999
Q ss_pred EEEEEECCCcEEEEEC--CCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+|++++.+|.+.+|++ .+|..+..+..+. +.+..++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999998888875 3577777776543 36788999984
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=5e-15 Score=141.90 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=176.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
-..+|+|.+|++|+.. +|++.....|.||......... ..+.+..|...|+.|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 3469999999999994 8888888899999987665321 2356888999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-----EEecCCCCCE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-----~~~~~~~~~v 497 (945)
+|+.|..-+||....+...+....+..|+...+++.|+|.++ .|++||....|.||-.+++.- +.-+.+.+.|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999855555555556778999999999999999 899999999999998333321 2234567889
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEcc-----C-------------CCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYD-----T-------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.++.|+|. +-++++|+.|+.++++..- . ++...++...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 99999984 4799999999999998531 1 1112233356678999999999999998886
Q ss_pred CCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCEEEEEECC
Q 002264 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
|..+.+-|..... .+.......- +...+.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8888888876654 2222222222 4444444432 334444443
No 206
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=3e-15 Score=140.96 Aligned_cols=205 Identities=22% Similarity=0.377 Sum_probs=157.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g~~ 420 (945)
+-+.|.|+.|.|++.. +++-. |..|.+|++..+..+.. .+ ....-.+|....++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCccce
Confidence 5569999999999997 55543 89999999988766321 11 0011233677888999999 8888
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~ 498 (945)
+++. .|+++..||+.+.++...+ -.+|...|..+.|+|+-+. +|+||+.||.|++|| .+..++..+.+|...|.
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8876 5789999999987665432 2478889999999999887 899999999999999 56678999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCC-----------------------------CeeEEecCCCCeEEEEEEcCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------------GSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~i~~~~~s~~ 549 (945)
++.|+|..+ +++++|+.|..|.+|....- ..+.++..|...|.+++|+.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999999866 89999999999999964321 112245566778999999886
Q ss_pred CCEEE-EEeecCCCCceEEEEeC
Q 002264 550 GSRLF-SCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 550 ~~~l~-~~~~~~d~~~~i~iwd~ 571 (945)
..+++ +.+. ||.+.|=.+
T Consensus 342 dPWiFASLSY----DGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLSY----DGRVIISSV 360 (370)
T ss_pred CCeeEEEecc----CceEEeecC
Confidence 66654 4443 777766443
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2.2e-13 Score=133.47 Aligned_cols=193 Identities=15% Similarity=0.208 Sum_probs=134.4
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC--CeEEEEEccCC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTM 528 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~ 528 (945)
..+..+.|+.+.. .|..|+.|| .++|. ..-............|.-+-|+. .+++..+.+ +.+++++.+..
T Consensus 6 ~ti~~~~~Nqd~~--~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 6 PTINFIGFNQDST--LLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred cceeeeeecccee--EEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccC
Confidence 3466677888887 788888877 45776 22222111111122344444432 355555544 35889988877
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc--eEEEEEcCCCCEEEEEE--
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS--NGVVQFDTTQNHFLAVG-- 604 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-- 604 (945)
..+..+..+. .|.++.++. ++|+++- ...|+|||+++.+++.++....... +..++++..+.+++.-+
T Consensus 79 ~~ICe~~fpt-~IL~VrmNr--~RLvV~L-----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 79 TTICEIFFPT-SILAVRMNR--KRLVVCL-----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred ceEEEEecCC-ceEEEEEcc--ceEEEEE-----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 7776665544 577888764 4566655 5569999999999999887663223 44444444555777743
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc-EEEEECCCC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIG 661 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~-i~iw~~~~~ 661 (945)
..|.|.+||..+-+.+..+..|.+ ++.+++|+++|.+||++++.|+ ||++.+.+|
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 679999999999999999987755 8999999999999999999987 789999887
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.5e-14 Score=131.49 Aligned_cols=236 Identities=14% Similarity=0.188 Sum_probs=175.2
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCC---cc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS---ND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~---~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..|.+-+|+|.+++|++|..+|.|.+..+++- +. ...+...++|.++|+.++|..+ +|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeecc-CceEEE
Confidence 35667799999999999999999999988631 11 1122245799999999999833 677777 699998
Q ss_pred Ee-CCCc------eEEEe--cCCC-----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 480 WE-LSGR------KLFNF--EGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 480 wd-~~~~------~~~~~--~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
|. .... .+... .-|. -.|+++...|..+ -++.++.|+.++.||++++.....+.+|...+.++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 86 2211 11111 1122 2478888877654 455666899999999999999999999999999999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc-------eEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS-------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
--.....+++++. ||++++||.++++.+..+....... -...++.-+..++++|+. ..+.+|+++..+
T Consensus 164 ~R~~~~qilsG~E----DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse 238 (325)
T KOG0649|consen 164 GRNANGQILSGAE----DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSE 238 (325)
T ss_pred ecccCcceeecCC----CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCC
Confidence 8666667888875 9999999999999888776443211 112344445668877764 579999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+...+..+. ++..+.|.. ..+++++..+.|.-|.+.
T Consensus 239 ~t~vfpipa---~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 239 STCVFPIPA---RVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceEEEeccc---ceeEeeeec--ceEEEeccccceeeeeec
Confidence 999998876 478888854 467788888889888875
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=8.2e-13 Score=139.26 Aligned_cols=512 Identities=11% Similarity=0.132 Sum_probs=298.3
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.....|++|+....| +|+|+.||.++|-.+.+...-.... .+.........+.+.||++.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 447899999999885 9999999999999886643221100 01111111223568999999999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEE--EecCCCCCEEEEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--NFEGHEAPVYSIC 501 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~v~~~~ 501 (945)
...+|.|.||-+-.|.-...+. -....+.|.+++|+.||. .++..-.||.|.+=..+|..+. .+++ .-...+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 9999999999998886554331 234667899999999999 6677777888877665555442 2222 1233556
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCC-------eeE----EecCCCCeEEEEEEc--------CCCCEEEEEeecCCC
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSKDG 562 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~~~d~ 562 (945)
|++ |.+.++.+-.+|.+.+||....- +.. .+...+..|..+.|. ||...++++..
T Consensus 164 ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 655 55777888888999999865321 111 111122345555553 57778888875
Q ss_pred CceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 563 DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 563 ~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+|.+.+..-.+ ..++..-.+ ..+....|+++|..++++|.+ +.|.+|. .-|+.+..++.++. .|
T Consensus 238 nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred CceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 66676654333 233322222 246678999999999998843 2455554 35777788877765 79
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECC--------------------------------CCccccccccCCccccccCcc
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANA--------------------------------IGLRSLRAVENPPFEALRTPI 680 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~--------------------------------~~~~~~~~~~~~~~~~~~~~i 680 (945)
++++|-..|-.+|.+- |+.|.+=+++ +.+..++...+ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~---------~ 381 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTH---------F 381 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcc---------e
Confidence 9999987776666553 4455544443 32222222111 1
Q ss_pred eeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCC
Q 002264 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (945)
Q Consensus 681 ~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 760 (945)
.++++..+.- .++.-..|+.+.-++.-+.........+.-.-.
T Consensus 382 ~~~a~~~ehC-------------------------------------vL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIG 424 (1189)
T KOG2041|consen 382 ENMAFYREHC-------------------------------------VLINRQDDGVIPEYSTLENRSRVYFLQLCNSIG 424 (1189)
T ss_pred eehheecccE-------------------------------------EEEeccccCCCcchhhhhcccceEEEeeecccC
Confidence 1122222211 112222223332221110000000000000000
Q ss_pred CCCccceEE---EEEecCCCeEEEeeecCeEEEEeecCCCCCCCCce---eeeeccccccCCCcc------cccccccCC
Q 002264 761 TDTSSKVVR---LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA---TASAVPQHWLPSSGL------LMANDVAGV 828 (945)
Q Consensus 761 ~~~~~~v~~---l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~l~~~ 828 (945)
..-...++. .-..-+|..++.++.+ .+.+|....+.+...-.. .......+=|..+|. -....+.|
T Consensus 425 T~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G- 502 (1189)
T KOG2041|consen 425 TSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLG- 502 (1189)
T ss_pred CcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeecc-
Confidence 001111111 1223356656666555 678888765432111000 000001111222221 01122444
Q ss_pred CcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecc---c
Q 002264 829 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR---V 904 (945)
Q Consensus 829 ~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~---~ 904 (945)
..++|.+++.| .+++.++- .|.|.=|.+.+.-...... -...|..+...- +...+|.-.--|.+.+.|+. +
T Consensus 503 -~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~ 577 (1189)
T KOG2041|consen 503 -SKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFD 577 (1189)
T ss_pred -CCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeecc-CcchhhhhhhhceeeeeecccccC
Confidence 67888888875 56777776 7999999998776655544 455688999888 77788888888888888876 3
Q ss_pred ceEEE-EecCCCcceeEEEecCCcceee
Q 002264 905 DEVKS-KLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 905 ~~~~~-~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
|..+. -+......|+.+.|..|...|+
T Consensus 578 g~ql~~~~~~errDVWd~~Wa~dNp~ll 605 (1189)
T KOG2041|consen 578 GDQLKLIYTSERRDVWDYEWAQDNPNLL 605 (1189)
T ss_pred cceeeeeehhhhhhhhhhhhccCCchHH
Confidence 44443 4455667799999987765444
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=7.3e-15 Score=138.59 Aligned_cols=245 Identities=13% Similarity=0.208 Sum_probs=175.6
Q ss_pred ecCCCcEEEEEEeCCCC----eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 341 LHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~----~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
+.|.-+++.+.|.|+.. .+|||. +..+++|.+...+...... ..+....-..+..++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999863 367775 4689999987432211000 0001112334678999999998
Q ss_pred -CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceEEEec
Q 002264 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFE 491 (945)
Q Consensus 417 -~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~~ 491 (945)
+-++|.+++-|-+..|||+++|........+-+|...|..++|...+.. .|++.|.||.|++|| ..- ..+..-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7789999999999999999997442222256789999999999997776 899999999999999 322 2222222
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcC-CeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCC-CEEEEEeecCCCCceEEE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~i 568 (945)
....+...++|+.. |-+++++-..| ..|.+.|++... .+..+..|...|+.++|.|.. ..++++|. |....+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 33567888898765 55778777665 468999998765 455788999999999999955 56777774 889999
Q ss_pred EeCCCCc------eeeEeccccCcceEEEEEcCC-CCEEEEEEC
Q 002264 569 WNESEGT------IKRTYAGFRKKSNGVVQFDTT-QNHFLAVGE 605 (945)
Q Consensus 569 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 605 (945)
||+.+.- ++..+. ....|+.+.|++. +.+++.+..
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec
Confidence 9987532 222222 2236888999864 566666653
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=2.9e-13 Score=144.49 Aligned_cols=330 Identities=12% Similarity=0.101 Sum_probs=196.9
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
++++-..++.|.+.| .+.+.+.++.........+.+++ ||+++++++.||.|.++|+.+.+...++.... ...+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 556777899999999 88888998886554434455544 77899999999999999999999887776544 567899
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc------CcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (945)
+++||++++++.. ..+.+.++|.++.++++.+.... ...+..+..++....+++.- +.+.|.+.|.....
T Consensus 85 ~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 85 VSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp E--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9999999998765 37899999999999998876432 12456677788887666655 45889888987765
Q ss_pred eEE--EeecCCCCCCccEEEEcCCCCEEEEE-ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 619 ILT--STDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 619 ~~~--~~~~~~~~~~v~~v~~sp~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
.+. .+... .......|+|++++++++ ..+..|.++|..++.. ...+.. |+..
T Consensus 162 ~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~------------------g~~p--- 216 (369)
T PF02239_consen 162 NLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDT------------------GKKP--- 216 (369)
T ss_dssp CEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-------------------SSSB---
T ss_pred ccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceE-EEEeec------------------cccc---
Confidence 443 33322 256789999999987765 4467899999887632 111110 0000
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
. +.....+. |...=.--+....
T Consensus 217 ----------------------------------------~------------~~~~~~~p------hp~~g~vw~~~~~ 238 (369)
T PF02239_consen 217 ----------------------------------------H------------PGPGANFP------HPGFGPVWATSGL 238 (369)
T ss_dssp ----------------------------------------E------------ETTEEEEE------ETTTEEEEEEEBS
T ss_pred ----------------------------------------c------------cccccccc------CCCcceEEeeccc
Confidence 0 00000000 1110000111122
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec---C-C
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA---T-G 851 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~---s-d 851 (945)
+...++.-... .+.+|+..+.+.+...- . .... .-+..+||++++.+. + +
T Consensus 239 ~~~~~~~ig~~----------------------~v~v~d~~~wkvv~~I~-~--~G~g-lFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 239 GYFAIPLIGTD----------------------PVSVHDDYAWKVVKTIP-T--QGGG-LFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp SSSEEEEEE------------------------TTT-STTTBTSEEEEEE----SSSS---EE--TT-SEEEEE-TT-SS
T ss_pred cceecccccCC----------------------ccccchhhcCeEEEEEE-C--CCCc-ceeecCCCCccEEeeccCCCC
Confidence 22221111111 23344555555444322 1 2233 677889999999988 3 3
Q ss_pred -CeEEEEeccCceEEEEecCCC-CCeeEEEeecCCCceEEEeecC--ceEEEEecccceEEEEec
Q 002264 852 -GKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 852 -~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~~~~~~lasg~~d--g~v~vwd~~~~~~~~~l~ 912 (945)
++|.|+|..+.+...++.... ..+..+.|++ +|+.+.....+ +.|.|||..+.+.+.++.
T Consensus 293 ~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 293 ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 679999999998888876322 3489999999 77755544433 379999999999988876
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.5e-14 Score=161.69 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=135.1
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-------eeEEecCCCCeEEEEEEcCCCCE
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSADGSR 552 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~ 552 (945)
|+..|..+..+..|...+..++.++. ++.++++||.||+|++|+.+... ...++...+..+..+...+.+..
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 88899999999999999999988753 55899999999999999986532 23345556778999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCC--c-----eeeEeccccCcc-eEEEEEcC-CCC-EEEEEECCCcEEEEECCCCeeEEE
Q 002264 553 LFSCGTSKDGDSFLVEWNESEG--T-----IKRTYAGFRKKS-NGVVQFDT-TQN-HFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~--~-----~~~~~~~~~~~~-~~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
+++++. ||.|.+.++... + ..+....+..+. +..-++.. .+. .++.+..-+.|..||.+.......
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999974 999999988752 1 112222222222 22223322 233 677788889999999998877776
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++..-..+.|++++.+|.+.++++|+..|.+.+||++-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 666554568999999999999999999999999999765
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=3.8e-13 Score=129.26 Aligned_cols=237 Identities=11% Similarity=0.145 Sum_probs=170.7
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeecccc--ccEEEEEEecCCCeeEEEEEeCC------CcEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV--GAVNDLAFAYPNKLLCVVTCGDD------KLIKV 479 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~~~~~~~l~s~s~d------~~i~v 479 (945)
...+++|+.|...+++|..+| .+||+.+--+... .-..+. -.+..|-|- .+. +.+.||.+ +.|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEE
Confidence 445599999999999998887 8999986522211 111122 223333332 332 23334433 47999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-CCCeeEEecCCC--CeEEEEEEcCCCCEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPG--HWCTTMLYSADGSRLFS 555 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~ 555 (945)
|| ...+++.++. ...+|.++.+.+ + .|++ -.++.|.+|... ..+....+.... ....+++-+.+...|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 99 8888888886 678899999865 2 3443 357889999887 334444443322 23444444445555555
Q ss_pred EeecCCCCceEEEEeCCCCce--eeEeccccCcceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeeEEEeecCCCCCCc
Q 002264 556 CGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
-|. ..|.|.+-|+...+. ...+..|.. .|.+++++.+|..+++++..|+ |+|||..+|..+..+........|
T Consensus 154 Pg~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PGF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CCC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 554 578999999887655 466777776 8999999999999999999887 799999999999999876666789
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+++|||++.+||++++.|++.||.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999999764
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.8e-14 Score=158.12 Aligned_cols=235 Identities=11% Similarity=0.081 Sum_probs=161.5
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
+..|++||..... .+.+..+.. .+....|+|+|+.++.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986555 344555544 67889999999999987743 469999998886543332222 245789999
Q ss_pred CCCEEEEEE-CCCcEEEEE--CCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCccc
Q 002264 640 EGNLLAVTT-ADNGFKILA--NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (945)
Q Consensus 640 ~g~~l~~~~-~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (945)
||+.|+.++ .+|.+.||. +.++. ...+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l------------------------------------------------ 287 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT--PSQL------------------------------------------------ 287 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC--eEee------------------------------------------------
Confidence 999988765 577766654 33321 0000
Q ss_pred CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecC
Q 002264 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHR 795 (945)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~ 795 (945)
.. +...+....|+|||+.|+.++ .+|...+|+++.
T Consensus 288 -----------------------------------------t~---~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 -----------------------------------------TS---GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -----------------------------------------cc---CCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 00 222345678899998877665 467888887542
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCe
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
. ++... .+ . +.. .+.+|||||++++.++.+.+.+||+.+++.......+ ..
T Consensus 324 ~--------------------~~~~~--~l-~--~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~ 374 (429)
T PRK01742 324 S--------------------GGGAS--LV-G--GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LD 374 (429)
T ss_pred C--------------------CCCeE--Ee-c--CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CC
Confidence 1 11110 01 1 222 4578999999999888556777999988764333322 34
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecc--cceEEEEecCCCcceeEEEecCC
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
..+.|+| ++++|+.++.+|.+.+|.+. +|..+.++.+|.+.+..++|+|-
T Consensus 375 ~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5788999 99999999999999888864 58888999999999999999984
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.2e-15 Score=149.12 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=147.6
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d 427 (945)
.+++|+++|. .|++|+.||+++||++.+...+.. ...|...|.++.|||||+.|++-+.|
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~-------------------e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILE-------------------EIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhh-------------------hHhhcCccccceeCCCCcEEEEecCC
Confidence 8999999998 699999999999999887765532 55689999999999999999999999
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEecCC---CeeEEEEEeCCCcEEEEe-C--CC-c--eEEEecCCCCCEE
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCGDDKLIKVWE-L--SG-R--KLFNFEGHEAPVY 498 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~~~l~s~s~d~~i~vwd-~--~~-~--~~~~~~~~~~~v~ 498 (945)
..+||++++|..+.... -..-......+.|+.|+ ...+++....-+.|+.|| . .+ . ...+.......|+
T Consensus 208 -~~~VW~~~~g~~~a~~t-~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKT-PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred -ceEEEEeccCchhhhcC-CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 89999999996665322 12345567889999887 321334444556677766 1 11 1 1222222344689
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
+++++. +|++++.|+.||.|-+++..+.+.... -..|...|+.+.|+||.+++++.+. +....+..+
T Consensus 286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs----~~~~~v~~l 353 (398)
T KOG0771|consen 286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS----DNEAAVTKL 353 (398)
T ss_pred eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc----CCceeEEEE
Confidence 999865 779999999999999999887666553 4567779999999999999998775 555555443
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=2.4e-13 Score=145.03 Aligned_cols=319 Identities=12% Similarity=0.062 Sum_probs=191.3
Q ss_pred EEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEE
Q 002264 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 590 (945)
+++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccce
Confidence 355667899999999998888888776655556789999999999874 7899999999999999887654 4677
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCC-----CCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCcc
Q 002264 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (945)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~ 663 (945)
++++++|+++++++ ..+.+.++|..+.++++.+..... ...+.++..+|....++..-. .+.|.+.|..+...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999876 789999999999999988865422 235667878887775555544 46777767654311
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
....
T Consensus 163 ~~~~---------------------------------------------------------------------------- 166 (369)
T PF02239_consen 163 LKVT---------------------------------------------------------------------------- 166 (369)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred ccee----------------------------------------------------------------------------
Confidence 1000
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (945)
.+. .........|+|++++++++. ..+.+-++|.... +..+ ..+. |....
T Consensus 167 ----------~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~------k~v~-----~i~~--g~~p~ 217 (369)
T PF02239_consen 167 ----------TIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG------KLVA-----LIDT--GKKPH 217 (369)
T ss_dssp ----------EEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT------EEEE-----EEE---SSSBE
T ss_pred ----------eec------ccccccccccCcccceeeecccccceeEEEeeccc------eEEE-----Eeec--ccccc
Confidence 000 112234567788888766543 3566767764321 1111 0111 11000
Q ss_pred -ccccCCCcC--CceeEEeecCCCceE-EecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe----ecC
Q 002264 823 -NDVAGVNLE--EAVPCIALSKNDSYV-MSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TED 894 (945)
Q Consensus 823 -~~l~~~~~~--~~i~~l~~s~dg~~l-a~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg----~~d 894 (945)
....+..|. ++++.. +..+... ...+.+.+.+||..+++.++++....++ .-+..+| ++++|.+. ...
T Consensus 218 ~~~~~~~php~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDA 293 (369)
T ss_dssp ETTEEEEEETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSH
T ss_pred ccccccccCCCcceEEee--ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCC
Confidence 000000011 122222 2233333 2223556778999999999999976666 8888899 88888887 455
Q ss_pred ceEEEEecccceEEEEecCCC-cceeEEEecCCcceeeeecCC--ceEEEEec
Q 002264 895 STIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD--AQVTLCVE 944 (945)
Q Consensus 895 g~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~~~D--g~i~vWdl 944 (945)
++|.|+|.++.+.+..+.... ..+..+.|++||+++..+..| +.|.|||.
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 899999999998888875332 359999999999976655433 36999985
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.3e-15 Score=150.06 Aligned_cols=295 Identities=11% Similarity=0.106 Sum_probs=217.5
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|..|.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|.|.....-+++++.||.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34788999999999999999999999999999999998765442 2348999999999988655447899999999998
Q ss_pred Ee--CCCce--EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC---CCC---eEEEEEEcCC
Q 002264 480 WE--LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGH---WCTTMLYSAD 549 (945)
Q Consensus 480 wd--~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~---~i~~~~~s~~ 549 (945)
=. .++.. ...+..|.++|..++.-|.. ..-|.+++.|+.+.-+|++.......+.. +.. ....++..|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 77 44443 35667799999999987764 36789999999999999987655443321 222 5678888897
Q ss_pred CC-EEEEEeecCCCCceEEEEeCCCCce------eeEeccc-----cCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-
Q 002264 550 GS-RLFSCGTSKDGDSFLVEWNESEGTI------KRTYAGF-----RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN- 616 (945)
Q Consensus 550 ~~-~l~~~~~~~d~~~~i~iwd~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 616 (945)
.. .+++++. +..+++||.+.-.. +..+..+ ..-.|++++++.++.-+++...|-.|++|.-.-
T Consensus 293 nt~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 293 NTNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 66 5666664 78899999775321 2222222 222488999998888888888899999995432
Q ss_pred -C----------eeEEE-eecCCCCCCccEEEE-cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 617 -V----------NILTS-TDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 617 -~----------~~~~~-~~~~~~~~~v~~v~~-sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
| ..+.. +++|.....|..+-| -|...++++|++-|.|.||+-.++ +.++.+.+... -|.|+
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~-----VVNCL 442 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRH-----VVNCL 442 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccc-----eEecc
Confidence 3 22233 667766667888875 568899999999999999999888 56665554322 24455
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.-.|.-. .|++.+.|..|+||...
T Consensus 443 EpHP~~P-------------------------------------vLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 443 EPHPHLP-------------------------------------VLASSGIDHDVKIWTPL 466 (559)
T ss_pred CCCCCCc-------------------------------------hhhccCCccceeeecCC
Confidence 4444333 34788888999999863
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=9.1e-15 Score=149.41 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=132.4
Q ss_pred CCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC-eEEEeeecCeEEEEeecCCCC--CC
Q 002264 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQ--NP 800 (945)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~lw~~~~~~~--~~ 800 (945)
+++--+++|-..|.+.+.+.........+ . ....-....++++.|-|.+. .++++-.+|.+.+||...... .+
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklf---n-e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLF---N-EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhh---h-hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 44445566666677776665431111100 0 00011347899999998654 456666799999998643211 11
Q ss_pred CCceeee---eccccccCCCc-ccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCe
Q 002264 801 SGKATAS---AVPQHWLPSSG-LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 801 ~~~~~~~---~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
.-..... ..+..|..... .++.. +.- -.+.|..++|||||++||+.+ ||.++|||..+.+++..++..-+..
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~-w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVAR-WHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccce-eEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence 0000000 01111111111 11111 111 245899999999999999999 9999999999999998888888899
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEec
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 924 (945)
.|++||| ||++|++|++|.-|.||.+..++.+.+-++|...|..|+|.
T Consensus 336 LCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 336 LCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999 99999999999999999999999999999999999999997
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.9e-13 Score=131.92 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=186.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las 423 (945)
..+..++|++.-- -+|++..|-.|++||-.. +... .+-......|+|++|-|. ++-|+.
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt------------------~Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPT------------------KLKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCc------------------eecchhhcceeEEEeccCCcceeee
Confidence 4688899998655 378889999999999765 2221 011123568999999994 567888
Q ss_pred EECCCcEEEEEccCCcccc-----------cceeeccccccEEEEEEecCCCeeEEEEEeC-CCcEEEEe-CCCceEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLR-----------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~-----------~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vwd-~~~~~~~~~ 490 (945)
|+..| |.+|..+...... .+....+| .+|++++|.+||. .+++++. |..|.||| .++..+.-.
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 88776 9999875321111 11123345 6899999999999 7888875 56899999 666655444
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
....+.+.-+.|+| |+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+.+.. +. -.+|.
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~lys 307 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLYS 307 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEEE
Confidence 34556788899988 5679999999999999965543333333344458999999999999887663 23 33333
Q ss_pred CCC----Cc-----------eeeEe------cc--ccCcceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCee
Q 002264 571 ESE----GT-----------IKRTY------AG--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNI 619 (945)
Q Consensus 571 ~~~----~~-----------~~~~~------~~--~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~ 619 (945)
+.- +. ++..+ .+ .-.+...+++|+|.|.++++.-.. +.|.+||.+..-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 321 10 00000 01 002246789999999999986533 3467788766544
Q ss_pred EEEee-cCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEEC
Q 002264 620 LTSTD-AEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 620 ~~~~~-~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~ 658 (945)
+.... +......-..++|+| +|.+|.++-..|.+.-|++
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 43331 111111245677777 6778888888888877765
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=3.8e-15 Score=149.48 Aligned_cols=284 Identities=14% Similarity=0.182 Sum_probs=219.1
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
..+.+.|+.+|++ |+.|+..|.|..+|+.+++...... -...|.++.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 5678999999997 6677889999999999988764311 235788999999999999884
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
...+.|||-. |..+.++ . ....|..+.|.|..- +|++++..|.++.-| ..|+.+..+....+.+..++-+|
T Consensus 190 -K~y~yvYD~~-GtElHCl---k-~~~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNN-GTELHCL---K-RHIRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCC-CcEEeeh---h-hcCchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 5679999955 4445433 2 335689999999877 899999999999999 89999999988888898888877
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
.+ ..+-+|...|+|.+|.....+....+-.|.++|.++++.++|++++++|. |..++|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 54 68889999999999999999999999999999999999999999999997 8999999999887666665522
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEE-CCCC--eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
....+++|..| +++.+....+.||. .-.+ .....+-.|....+|..+.|.|-...|.+|-..|.-.+.=...|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 45667888654 45555556799994 3221 12222222333448999999998888888887776666655555
Q ss_pred ccccccc
Q 002264 662 LRSLRAV 668 (945)
Q Consensus 662 ~~~~~~~ 668 (945)
......+
T Consensus 412 ePN~Ds~ 418 (545)
T KOG1272|consen 412 EPNYDSL 418 (545)
T ss_pred CCCcchh
Confidence 4333333
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2e-13 Score=140.79 Aligned_cols=283 Identities=13% Similarity=0.131 Sum_probs=206.7
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC--CccEEEEEEc
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWS 415 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~i~~s 415 (945)
+.-++|...-+.|..||||+|++|||...-.|++||+..-.... ..| ...|.-.-.|
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiLs 103 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEILS 103 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEec
Confidence 34467888889999999999999999999999999998755432 223 3455556666
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
.|-..++.-..|.+|.+...- |.... +. -...-.+++++.-... |+.++....|+-++ ..|+-+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy~----~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHYR----TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceeee----ee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 666666666778877776432 22111 10 1122345555544442 34444456788888 8999999998888
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC------C-----eEEEEEEcCCCCEEEEEeecCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------H-----WCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~-----~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+.++++..++.. .+|++|+.+|.|..||.+.......+.... . .|+++.|+.+|-.+++++. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999987753 689999999999999998876655443321 1 5899999999999999986 9
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCC--CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g 641 (945)
|.+.+||+++.+++..-......++..+.|.+. ++.+++ .....++|||-.+|+....+.... .++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCC
Confidence 999999999988876554444446777888665 334443 345689999999999988886533 68999999999
Q ss_pred CEEEEEECCCcEEEEECC
Q 002264 642 NLLAVTTADNGFKILANA 659 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~ 659 (945)
.+++++-.++.+..|=+.
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 999999988877766554
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.2e-13 Score=145.58 Aligned_cols=238 Identities=11% Similarity=0.108 Sum_probs=156.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEEccCCccccc
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~---dg~i~vwd~~~~~~~~~ 443 (945)
..|.+||....... .+..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~--------------------~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCE--------------------EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 36888887654432 13446678999999999999987643 3579999998875322
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-CeE
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKI 520 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 520 (945)
+....+.+..++|+|||+. ++++.+.++ .|.+||..+..+..+..+...+....|+| ||+.|+..+.+ +..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334557899999995 233344455 58889944444455555555677788877 56777666654 455
Q ss_pred EEE--EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 521 KAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 521 ~iw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
.+| |+..+.. ..+...........|+|||++++..+.. ++...|++||+.+++........ ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEEeCCCC---CCCCceECCCCC
Confidence 555 5554433 3333444455678999999999887642 23567999999888654332221 233578999999
Q ss_pred EEEEEECCCc---EEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 599 HFLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 599 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
.++.++.++. +++++++ |.....+..+. +.+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 9999887664 6777874 44445555433 3678888987
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.1e-14 Score=142.20 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=148.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE
Q 002264 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (945)
Q Consensus 410 ~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~ 488 (945)
.+++|+.+|..|++|+.||++|||++.+...+. ....|.+.|.++.|+|||+ .|++-+.| ..+||+ .+|..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhh
Confidence 789999999999999999999999987665444 5667999999999999999 89999999 999999 8887666
Q ss_pred EecCC--CCCEEEEEeeecCCcc--EEEE-EEcCCeEEEEEccCCCe-----eEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 489 NFEGH--EAPVYSICPHHKENIQ--FIFS-TAIDGKIKAWLYDTMGS-----RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 489 ~~~~~--~~~v~~~~~~~~~~~~--~l~s-~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..... ......+.|..++.+. ++++ ...-+.|+.||+..... ..........|++++.++||++++.++.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 55422 2234455555433211 2222 23345566665543222 1122223347999999999999999986
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+|.|-+++..+.+.++.++..+...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 302 ----dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 ----DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ----CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 88999999999988888877666689999999999999998888888777654
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=3e-13 Score=129.91 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=179.2
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
-..+|+|.+|++|+..+|.+.....|.||...+........++..|...|+.++|+|..+ .|++|+.|..-+||. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999988776666778999999999999999999 899999999999999 35
Q ss_pred C---ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE----EecCCCCeEEEEEEcCCCCEEEEE
Q 002264 484 G---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 484 ~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
+ ++...+..+....+++.|+|.+ +.+++|+..+.|.+|-++..+.-. .-......|.++.|+|++-.++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 3445667789999999998854 689999999999999876654332 122335579999999999999998
Q ss_pred eecCCCCceEEEEeCC-----C-------------CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 557 GTSKDGDSFLVEWNES-----E-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
+. |+..+++..- + |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 8888887631 1 22233332 223368889999999999999999999999987664
Q ss_pred -eEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+....... -+..++.|-.+... +.++.|
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~v-v~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSV-VAAGYD 269 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCce-eecCCC
Confidence 233332222 25677777655443 344444
No 225
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.57 E-value=8.9e-10 Score=130.67 Aligned_cols=420 Identities=10% Similarity=0.091 Sum_probs=243.0
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEE----EccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
..+.|.++.+-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .++..+.++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444322 22 2334567899999999999 66666667777764
Q ss_pred eCCCceE------------------------EEecCCCC------------------CE----EEEEeeecCCccEEEEE
Q 002264 481 ELSGRKL------------------------FNFEGHEA------------------PV----YSICPHHKENIQFIFST 514 (945)
Q Consensus 481 d~~~~~~------------------------~~~~~~~~------------------~v----~~~~~~~~~~~~~l~s~ 514 (945)
+.+-..+ ..|.|..+ .+ ..+.+++.+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 4222111 11111100 01 23344557799999988
Q ss_pred Ec---C---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc---ccC
Q 002264 515 AI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---FRK 585 (945)
Q Consensus 515 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~---~~~ 585 (945)
+. . +.+++|+-+ +........-.+--.+++|.|.|+.+++.-. ..+...|.+|. ++|-....|.- ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 2 579999754 3333333333334467899999999998875 33345666676 34443333332 233
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCee--EEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCc
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
..+..+.|++++..|+..-.|. |.+|...+..- .+.+..... ..+..+.|+| +...|...+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 4688899999999999977665 99999988763 333433322 2456699999 55667777777887766553110
Q ss_pred cccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccc
Q 002264 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (945)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (945)
........+ -.++..--||..+ .+-.
T Consensus 383 ~~s~~~~~~--------D~g~vaVIDG~~l----------------------------------------------llTp 408 (928)
T PF04762_consen 383 SRSPGSSPN--------DNGTVAVIDGNKL----------------------------------------------LLTP 408 (928)
T ss_pred EecCCCCcc--------CceEEEEEeCCeE----------------------------------------------EEec
Confidence 000000000 0111222233222 1111
Q ss_pred cceeecCCcc--eeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccc
Q 002264 743 LAEIVDSGQC--RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 743 ~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (945)
+.....+... ..+. -...|.+++|++++..+++...||.+.+|................ ........
T Consensus 409 f~~a~VPPPMs~~~l~------~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 477 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELE------LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLDSM 477 (928)
T ss_pred ccccCCCchHhceEEc------CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhcccccc
Confidence 1111112222 2222 345899999999999899999999999998654332110000000 00000000
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC-C---CeEEEEeccCce---EEEEecCCCCCeeEEEeecCCCceEEEeec
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G---GKISLFNMMTFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d---~~i~iwd~~~~~---~~~~~~~h~~~i~~l~~s~~~~~~lasg~~ 893 (945)
...... .....+..++|..+..+++... + +.+.+++....+ .......-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 0245678888888887777665 3 358888874332 2333333344455555555 4444666677
Q ss_pred CceEEEEecc
Q 002264 894 DSTIHIYNVR 903 (945)
Q Consensus 894 dg~v~vwd~~ 903 (945)
+|.|...+..
T Consensus 555 ~G~v~~~~~~ 564 (928)
T PF04762_consen 555 DGKVFQLSSD 564 (928)
T ss_pred CCEEEEeecC
Confidence 8888866544
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.9e-12 Score=126.28 Aligned_cols=195 Identities=12% Similarity=0.162 Sum_probs=139.2
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 530 (945)
..+..++|++.-. .++++..|-.|++||.+.++...++. ....|++++|.|... ..|+.|+. +-|.+|..+....
T Consensus 99 ~dlr~~aWhqH~~--~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsa-selavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHII--AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhh--hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCc-ceeeeeec-ceeEEEEcCcccc
Confidence 3577899998555 78999999999999955466555553 355799999988653 45666665 4578897543211
Q ss_pred e------------EEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 531 R------------VDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 531 ~------------~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
. ..+..++ ..|+++.|.+||..+++++. ++..|.+||..++..+....... +.+.-+.|+||+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~---gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSPdg 250 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF---GSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc---CcceEEEEcCCCCCcccccccCC-CceeeEEEcCCC
Confidence 1 1112222 38999999999999999987 68899999999987665542222 257789999999
Q ss_pred CEEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 598 NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.+|+++.-|+..++|+.... ....-.-. .+.|...+|+|+|++|...... .-+++.+
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWspcGsfLLf~~sg-sp~lysl 308 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSPCGSFLLFACSG-SPRLYSL 308 (445)
T ss_pred CEEEEecccceeeeehhcccceecceecc---CCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence 99999999999999965432 22222222 2379999999999988766543 4445554
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.2e-12 Score=132.39 Aligned_cols=331 Identities=13% Similarity=0.118 Sum_probs=209.3
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE-----EC-----CC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-----GE-----DS 607 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~-----dg 607 (945)
...++..+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.++++.+- .. .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 34577889999999999886 778999999888644444332 46789999999988762 12 24
Q ss_pred cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
.+.+|++.++.....+......+ ++..|++|..+.|- -..+.+.+|++.+...... ..+...+..+.++|
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-------kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-------KLSVSGITMLSLSP 175 (566)
T ss_pred ceeeeeeccceehhheehhhhcC--cccccccchhhhhh-hhcceEEEEecCCccceee-------eeeccceeeEEecC
Confidence 57899999966666565443322 68899988765443 2346899999876322222 22234467777877
Q ss_pred cccc--eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCcc
Q 002264 688 SASS--AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (945)
Q Consensus 688 ~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (945)
.+.. +++ +-+ -..+.-..+++|..............++ ...
T Consensus 176 gp~~~~vAv-yvP-------------------------------e~kGaPa~vri~~~~~~~~~~~~a~ksF-----Fka 218 (566)
T KOG2315|consen 176 GPEPPFVAV-YVP-------------------------------EKKGAPASVRIYKYPEEGQHQPVANKSF-----FKA 218 (566)
T ss_pred CCCCceEEE-Ecc-------------------------------CCCCCCcEEEEeccccccccchhhhccc-----ccc
Confidence 6432 221 111 1223335677777652111111111011 222
Q ss_pred ceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 766 KVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 766 ~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
.-..+.|.+-|..|+.... | ++ ..........++.+.+.. |......+. ..++|.++.|+++|+
T Consensus 219 dkvqm~WN~~gt~LLvLastd-------VD----ktn~SYYGEq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTD-------VD----KTNASYYGEQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGR 283 (566)
T ss_pred ceeEEEeccCCceEEEEEEEe-------ec----CCCccccccceEEEEEec-CceEEEecC---CCCCceEEEECCCCC
Confidence 3345778877765543322 2 00 001111111222233333 332222233 378999999999998
Q ss_pred eEEecC---CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecC---ceEEEEecccceEEEEecCCCcce
Q 002264 845 YVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRVDEVKSKLKGHQKRI 918 (945)
Q Consensus 845 ~la~~s---d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V 918 (945)
-++++. --++.|||++ +.++..+ ..++-.++-|+| .|++|+.++-+ |.|-|||+.+.+++..+.+-. -
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--t 357 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--T 357 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--c
Confidence 777765 3679999986 5666665 467789999999 88888877644 789999999999998887543 4
Q ss_pred eEEEecCCcceeeeecC------CceEEEEec
Q 002264 919 TGLAFSTSLNILVSSGA------DAQVTLCVE 944 (945)
Q Consensus 919 ~~l~~s~dg~~l~s~~~------Dg~i~vWdl 944 (945)
+-+.|+|||.+++|++. |+.++||+.
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 55799999999999865 677899974
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.1e-11 Score=119.44 Aligned_cols=239 Identities=15% Similarity=0.223 Sum_probs=153.6
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEE-EEC------CCcEEEE
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGE------DSQIKFW 612 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~------dg~i~iw 612 (945)
...+++|+.|...++++. +.-.++|+..--+....-+.+.. ....+..--..++++. ||. -+.|.||
T Consensus 7 ~~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 345699999999998886 55688998765332221111111 1222222222345554 332 2479999
Q ss_pred ECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
|=....++..+.... +|.+|.+.++ .+++.- .+.|.+|...+..+.+..+.... +|.|
T Consensus 81 DD~k~~~i~el~f~~---~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-------------NPkG--- 138 (346)
T KOG2111|consen 81 DDLKERCIIELSFNS---EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-------------NPKG--- 138 (346)
T ss_pred ecccCcEEEEEEecc---ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-------------CCCc---
Confidence 977777887777643 7999999876 455444 56999999876544443332211 1221
Q ss_pred eccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEE
Q 002264 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (945)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 772 (945)
..++.-
T Consensus 139 --------------------------------------------------------------------------lC~~~~ 144 (346)
T KOG2111|consen 139 --------------------------------------------------------------------------LCSLCP 144 (346)
T ss_pred --------------------------------------------------------------------------eEeecC
Confidence 011111
Q ss_pred ecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-
Q 002264 773 TNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (945)
Q Consensus 773 s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s- 850 (945)
..+...|+.-+ .-|.|++-++...... ....+.. |...|.|++.+.+|..+|++|
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~---------------------~p~~I~A--H~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPN---------------------APSIINA--HDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcC---------------------CceEEEc--ccCceeEEEEcCCccEEEEecc
Confidence 11111222222 2467777665432211 0111333 999999999999999999999
Q ss_pred CCe-EEEEeccCceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 851 GGK-ISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 851 d~~-i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
.|+ |||||..+|+.+.+++. ....|.|++||| +..+||++|+.|+|.|+.++.
T Consensus 202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 788 99999999999999874 234599999999 999999999999999998874
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=144.89 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=149.9
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 359999999886432 3334455678999999994 344667788777
Q ss_pred EEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 479 vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
+|. ..+.....+..+........|+| ||+.|+..+. +|...+|.++.. .....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 766 55555667766666666777876 5677765554 567777765432 22222223333345678999999998
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeeEEEeecCCCCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
..+.. .+...|.+||+.+++........ ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 77642 22347999999888765433221 235678999999998877443 3666666 4555555543322 5
Q ss_pred ccEEEEcCC
Q 002264 632 LPRLRFSKE 640 (945)
Q Consensus 632 v~~v~~sp~ 640 (945)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677888873
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.8e-12 Score=144.16 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=157.3
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCccccc
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~ 443 (945)
..|.+||...+... .+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46888997544321 144567789999999999999988643 469999998876432
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCe-
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK- 519 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~- 519 (945)
+..+.+...+++|+|||+. ++++.+.++ .|.+||..+..+..+..+.......+|+| ||+.|+.++. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3334455668899999995 334555555 58999944444566666665566778876 5677776653 455
Q ss_pred -EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 520 -i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
|.++|+.+++.. .+...+.....++|+|||+.++..+. .++...|.+||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 555565554432 23333344557899999999988754 223457999999888765332221 234568999999
Q ss_pred EEEEEEC---CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 599 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
+++..+. .+.|+++++..+ ....+..+. +.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 9888764 346888888544 444444332 2567778876
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.1e-12 Score=142.49 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=152.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc--
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~-- 476 (945)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5567889999999999999988764 467999999887543 34456677889999999995 3456666665
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+||..+.....+..+........|+| ||+.|+..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 6677855555666776766667778876 5677776653 33 5777787654433 333334456678899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC------CcEEEEECCCCeeEEEeecCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~ 627 (945)
+..... .+...|.+||+.++.. +.+... . .+....|+|+|+.|+..+.+ ..++++|+..+.. ..+...
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~- 422 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP- 422 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC-
Confidence 887642 2345789999865543 333221 1 35668899999998876542 3688888876655 344322
Q ss_pred CCCCccEEEEcC
Q 002264 628 GLPNLPRLRFSK 639 (945)
Q Consensus 628 ~~~~v~~v~~sp 639 (945)
..+...+|+|
T Consensus 423 --~~~~~p~Wsp 432 (435)
T PRK05137 423 --GDASDPAWSP 432 (435)
T ss_pred --CCccCcccCC
Confidence 2456778876
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=3.9e-14 Score=142.33 Aligned_cols=269 Identities=14% Similarity=0.153 Sum_probs=209.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
...-..+.++.+|++|+.|+..|.|-.+|+.++.... .+. -...|.++.|..+.+ +|+.+ ..+.+.|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEecCCCc
Confidence 3456789999999999999999999999999976544 222 355789999998887 56655 4788999999999
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.+.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99999866 458888888753 67888899999999999999999888888888999999998887777765 999
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
|.+|.....+++..+..|.+ .+.++++.++|.++++.|.|..++|||++....+.++..+ + +...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999987 8999999999999999999999999999988766666542 2 56888888765 344
Q ss_pred EEECCCcEEEEECCCCc--cccccccCCccccccCcceeeeecccccceeccCC
Q 002264 646 VTTADNGFKILANAIGL--RSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
.+ ....+.||.-.-.. ........|. ..++|..+.|.|-...|-.|-.
T Consensus 350 ~~-~G~~v~iw~d~~~~s~~~~~pYm~H~---~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 350 LS-YGDHVQIWKDALKGSGHGETPYMNHR---CGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ee-cCCeeeeehhhhcCCCCCCcchhhhc---cCcccccceeccHHHeeecccc
Confidence 43 34479999642220 1111111111 2346888888887766644433
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.9e-12 Score=143.16 Aligned_cols=260 Identities=13% Similarity=0.106 Sum_probs=160.9
Q ss_pred HHHhhhcCCCCCC--cceeecCCCC------ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEe--CcCcEEEE
Q 002264 303 EQLMKRLRPAPSA--EEVTYSSSRH------QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLW 372 (945)
Q Consensus 303 ~~~~~~~~~~~~~--~~v~~~~~~~------~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs--~dg~i~iw 372 (945)
..+.++++..++. ..++|..... .+|-.+...........+...+.+.+|||||+.++.+.. .+..|.+|
T Consensus 149 d~i~~~ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~ 228 (429)
T PRK03629 149 DEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 228 (429)
T ss_pred HHHHHHhcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence 3445555555422 3355554321 144444333334444567779999999999997544432 23579999
Q ss_pred EcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCC--cEEEEEccCCcccccceeecc
Q 002264 373 ELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDA 449 (945)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~ 449 (945)
++.+++... +....+.+..++|||||+.|+.. +.+| .|.+||+++++.. .+..
T Consensus 229 dl~~G~~~~--------------------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~ 284 (429)
T PRK03629 229 TLANGAVRQ--------------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTD 284 (429)
T ss_pred ECCCCCeEE--------------------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccC
Confidence 998875431 11122334568999999998865 4444 5889999887543 2334
Q ss_pred ccccEEEEEEecCCCeeEEEEEeC-CCcEEEE--eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEE
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAW 523 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw 523 (945)
+...+....|+|||+ .|+..+. ++...+| |..+.....+...........|+| +|++++..+.+ ..|.+|
T Consensus 285 ~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 285 GRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred CCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEE
Confidence 555678999999999 4554443 4454555 544444455544444556677766 66777766543 357888
Q ss_pred EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
|+.++.... +... .......|+|||+.|+..+.++ +...+.++++ ++...+.+.++.. .+...+|+|
T Consensus 361 dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 361 DLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred ECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 987765443 2221 2234678999999999888632 2445788887 4555566666544 566677776
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.54 E-value=3.1e-12 Score=130.66 Aligned_cols=351 Identities=11% Similarity=0.084 Sum_probs=231.2
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
-++..++|||.|.+ |++.. -..|.+|.......+.. --...|..+.|||.++||.+=
T Consensus 33 ~p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcchh-eehhh-ccceEEccccchhheee---------------------eecCCceecccCcccceeeee
Confidence 48999999999995 77654 45689998776654321 123479999999999999986
Q ss_pred ECCC---------------cEEEEEccCCcccccceeecccccc--EE-EEEEecCCCeeEEEEEeCCCcEEEEeCCCc-
Q 002264 425 FTKH---------------LIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGR- 485 (945)
Q Consensus 425 ~~dg---------------~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~- 485 (945)
+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+ +++-- -...++|++.++.
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCcc
Confidence 5433 49999999987665 34444433 44 688998887 44332 2456888884322
Q ss_pred eEEEecCC-CCCEEEEEeeecCCccEEEE-----EEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 486 KLFNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 486 ~~~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
....+... ...+....|+|.+++..|+. .+.++++++|.+.....+.........-..+.|.+.|+++++-...
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 22222222 24577778888766666554 3567889999988666655444333333567899999988764321
Q ss_pred C-------CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 560 K-------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 560 ~-------d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
. -++..++++++......... ... .+|...+|.|.++.+++.+ .+-.+.++|++.. ....+...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~---- 316 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ---- 316 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc----
Confidence 1 13567889988744333222 223 3799999999988877755 7888999999776 44433322
Q ss_pred CccEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 631 NLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
.=+.+.|+|.+++++.++-| |.+-+|+......+...+.+.. ..-..|+|||+++.+.......
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-------~s~~~wspd~qF~~~~~ts~k~------ 383 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-------TSYCDWSPDGQFYDTDTTSEKL------ 383 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-------ceEeeccCCceEEEecCCCccc------
Confidence 33778899999999998775 7899999987755544444432 2334789999987644332211
Q ss_pred CCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeec
Q 002264 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (945)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d 785 (945)
-.|..+++|++.... ....+.+.|.|.|++..+.+.+
T Consensus 384 -------------------------~~Dn~i~l~~v~g~~----------------~fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 384 -------------------------RVDNSIKLWDVYGAK----------------VFELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred -------------------------ccCcceEEEEecCch----------------hhhhhhccccCCcccceeeccC
Confidence 235788999986311 1234566777777766665555
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.9e-12 Score=134.26 Aligned_cols=482 Identities=12% Similarity=0.101 Sum_probs=280.4
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc------------cccceeeccccccEEEEEEecCCCeeEEEEEe
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s 472 (945)
......|++|+....++|+|+.||.++|..+.+... +..-.++.||++.|.-+.|+.+.+ .|-|+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 345788999999999999999999999998865321 122236889999999999999888 789999
Q ss_pred CCCcEEEEe-CCCceEEEe--cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 473 DDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 473 ~d~~i~vwd-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
.+|.|.+|- ..|.-.... ....+.|.+++|+. +|..+...-.||.|.+=.++ +..++--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeec-cceecchhcchheccceeeccc
Confidence 999999999 666543222 22456688888865 67888888888888765543 2333333334445567899999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCc-------eeeEeccc-c--CcceEEEEE--------cCCCCEEEEEECCCcEEE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGF-R--KKSNGVVQF--------DTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~-------~~~~~~~~-~--~~~~~~~~~--------~~~~~~l~~~~~dg~i~i 611 (945)
.+.++.+-. .|.+.+||....- +.....+. . ...+..+.| -|+...++++-..|.+.+
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887764 7889999865321 10111110 0 011333333 357789999999999998
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC---------cEEEEECCCCccccccccCCccccccCccee
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN---------GFKILANAIGLRSLRAVENPPFEALRTPIES 682 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~ 682 (945)
..-.+......+... -.+..+.|+++|.+||+++.+. .|.++..- | ....+++ .....|++
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G-~i~gtlk-----vpg~~It~ 313 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G-HIVGTLK-----VPGSCITG 313 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h-hheEEEe-----cCCceeee
Confidence 876554443444332 2678999999999999998752 34444321 1 2222222 22345777
Q ss_pred eeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccC-C---CCCCcccccceeecCCcceeeecC
Q 002264 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD-V---TDKPKPWQLAEIVDSGQCRLVTMP 758 (945)
Q Consensus 683 v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---d~~i~vw~~~~~~~~~~~~~~~~~ 758 (945)
+.|-..|-.++-+..+... +....|.-....+ ....+.... . .-.|.+||..+....-.
T Consensus 314 lsWEg~gLriA~Avdsfiy-fanIRP~ykWgy~---------e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------- 376 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIAVDSFIY-FANIRPEYKWGYI---------EETVVYVYQKEELPQYGIMFWDTKTNEKTVK------- 376 (1189)
T ss_pred eEEcCCceEEEEEecceEE-EEeecccceEEEe---------eeEEEEEEccCCCcceEEEEEecccChhhhh-------
Confidence 7777777665543332111 0000000000000 000000110 0 12345666553211110
Q ss_pred CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEe
Q 002264 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (945)
Q Consensus 759 ~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~ 838 (945)
.-....++++..+--.|+.-..+|.+.-++-- ...+ +.....+.+.- |..+.. .-..|.-.-
T Consensus 377 ----~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l----e~~~---~~~~l~LCNSI-GT~lD~------kytdirP~F 438 (1189)
T KOG2041|consen 377 ----TVTHFENMAFYREHCVLINRQDDGVIPEYSTL----ENRS---RVYFLQLCNSI-GTSLDY------KYTDIRPKF 438 (1189)
T ss_pred ----hhcceeehheecccEEEEeccccCCCcchhhh----hccc---ceEEEeeeccc-CCcCCC------CcceeeeeE
Confidence 11223456676666666666666666544210 0000 01111111111 111110 011122122
Q ss_pred ecCCCceEEecCCCeEEEEeccCceE--------------------------------EEEecCCCCCeeEEEeecCCCc
Q 002264 839 LSKNDSYVMSATGGKISLFNMMTFKV--------------------------------MTTFMSPPPASTFLAFHPQDNN 886 (945)
Q Consensus 839 ~s~dg~~la~~sd~~i~iwd~~~~~~--------------------------------~~~~~~h~~~i~~l~~s~~~~~ 886 (945)
..-++.+++.+|...+.+|.....+. ..++.|..++|.+++.|. +
T Consensus 439 v~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k 515 (1189)
T KOG2041|consen 439 VCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---K 515 (1189)
T ss_pred EEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---e
Confidence 22367788888888888886431110 123445566788888764 6
Q ss_pred eEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 887 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
+|.++-..|.|+-|.+.++-+..... -+..|.+++.+-+...++....-|.+.+.||
T Consensus 516 ~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dL 572 (1189)
T KOG2041|consen 516 FLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDL 572 (1189)
T ss_pred EEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeec
Confidence 88899999999999999876555443 3456777777777666666666666655554
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.4e-12 Score=144.32 Aligned_cols=245 Identities=18% Similarity=0.147 Sum_probs=153.0
Q ss_pred eeecCCCC---ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC-c--CcEEEEEcCCCCccccccccccccc
Q 002264 318 VTYSSSRH---QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-N--GEITLWELAMRDRLVSKPFKIWDMA 391 (945)
Q Consensus 318 v~~~~~~~---~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~-d--g~i~iwd~~~~~~~~~~~~~~~~~~ 391 (945)
+.|..... .+|-.+...........+...+.+.+|||||+. |+..+. + ..|.+||+.+++...
T Consensus 166 iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~---------- 234 (427)
T PRK02889 166 IAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV---------- 234 (427)
T ss_pred EEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE----------
Confidence 55554332 255555433444455678889999999999997 544442 2 369999998876432
Q ss_pred ccCcccccccccCCCccEEEEEEcCCCCEEEE-EECCCcEEEEEc--cCCcccccceeeccccccEEEEEEecCCCeeEE
Q 002264 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (945)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las-~~~dg~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l 468 (945)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+.+......|+|||+. ++
T Consensus 235 ----------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~ 299 (427)
T PRK02889 235 ----------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IY 299 (427)
T ss_pred ----------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EE
Confidence 2223345668999999998874 567777666654 4443 22 34455556677899999994 23
Q ss_pred EEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEE
Q 002264 469 VTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 469 ~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~ 543 (945)
+++..++...+|. ..+.....+...........|+| +|++|+..+.++ .|.+||+.+++.... .. ......
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~ 375 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDES 375 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccC
Confidence 3344456667776 34433333332233344566766 667888776554 699999987765432 22 223467
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
..|+|||+.|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 376 p~~spdg~~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 376 PSFAPNGRYILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred ceECCCCCEEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 89999999999887532 3456777777 4555555544333 455566765
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=3.1e-11 Score=134.19 Aligned_cols=151 Identities=20% Similarity=0.293 Sum_probs=126.7
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~ 429 (945)
+.++++.-+ +++|+.-+.|.+|+....+.. ..+.||.+.|.++.|+-||+++++.+.|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666654 889999999999998722111 138899999999999999999999999999
Q ss_pred EEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCC-CEEEEEeeecCCc
Q 002264 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENI 508 (945)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 508 (945)
+++|++++++.... +.-+|+..|+.+.|.|. .++|++.|.+.++|+..+..+..+.+|.. .+..++..+ +.
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 99999999887652 45689999999999987 58999999999999988888889988865 588888765 44
Q ss_pred cEEEEEEcCCeEEEEEccCC
Q 002264 509 QFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~ 528 (945)
..+++++.|+.+++||+...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 78999999999999997653
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=2.9e-12 Score=131.43 Aligned_cols=252 Identities=12% Similarity=0.129 Sum_probs=165.9
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-----cCCCC
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-----SPDGN 419 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~-----s~~g~ 419 (945)
+.++...++-.|++|.+-- ...+.+|+...+..+.. ++.+..+.+- ..+|=+| .|.+-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 3566777777888755433 45788999876544321 1112223332 2223333 35677
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
-|+.|-.-|.|.+.|....+ +..+.... -.+..|+++.|-|.++. .|+.+-.+|.+.++|.. +....
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~ 255 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGA 255 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccC
Confidence 78889889999999876522 22111111 13468999999998876 66777789999999841 11111
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEc-cCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLY-DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
+..++..-.++..+.... |-- .+...+..+......|...+|+|||++|++.+. |+.++|||..+.++
T Consensus 256 t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 111111112222332221 111 111333334444557999999999999999995 99999999999888
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
+..+...-+ ...|++|+|||++|++|++|--|.||.+..++.+..-+ +|...|..|+|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 776665555 68899999999999999999999999999998887655 455699999998
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.4e-12 Score=141.93 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=145.6
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeC---cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
........|...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+.+...+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~ 252 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGA 252 (433)
T ss_pred CCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccC
Confidence 344455667889999999999997 554442 3469999998776431 2223344567
Q ss_pred EEEcCCCCEEEE-EECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCc--EEEEeCCCc
Q 002264 412 VAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--IKVWELSGR 485 (945)
Q Consensus 412 i~~s~~g~~las-~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~--i~vwd~~~~ 485 (945)
++|||||+.|+. .+.+| .|++||+.+++.. .+..+.......+|+|||+ .++.++ .++. |.++|..+.
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCC
Confidence 899999998764 45555 5999999887543 3445555667899999999 455444 4555 556664333
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
....+..+.......+|+| +|+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+
T Consensus 327 ~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 327 SAERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred CeEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CC
Confidence 3334433333444677766 567777665433 6899998776654 332 22234567899999999887653 34
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
...|+++++.. ...+.+..+.. .+...+|+|
T Consensus 402 ~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 402 RGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred ceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 56788998854 34444443322 445556665
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=9.6e-12 Score=138.61 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=163.4
Q ss_pred HHHhhhcCCCCCC--cceeecCCCC-------ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEe--CcCcEEE
Q 002264 303 EQLMKRLRPAPSA--EEVTYSSSRH-------QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITL 371 (945)
Q Consensus 303 ~~~~~~~~~~~~~--~~v~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs--~dg~i~i 371 (945)
+.+++.++..++. ..|.|..... .+|-.+...........|...+.+.+|||||+.|+.+.. .+..|.+
T Consensus 151 d~i~~~ltg~~g~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~ 230 (435)
T PRK05137 151 DAIYERLTGEKGYFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYL 230 (435)
T ss_pred HHHHHHHhCCCCcCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEE
Confidence 4455555554422 3366654311 255544433444555678889999999999997444432 2468999
Q ss_pred EEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE-EEECCCc--EEEEEccCCcccccceeec
Q 002264 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHL--IQLYSYAGSNDLRQHSQID 448 (945)
Q Consensus 372 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-s~~~dg~--i~vwd~~~~~~~~~~~~~~ 448 (945)
||+.+++... +..+.+.+.+.+|||||+.|+ +.+.++. |.+||+.+++.. .+.
T Consensus 231 ~dl~~g~~~~--------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt 286 (435)
T PRK05137 231 LDLETGQREL--------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLT 286 (435)
T ss_pred EECCCCcEEE--------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----Ecc
Confidence 9998876431 334556778899999999876 4455554 777788876543 355
Q ss_pred cccccEEEEEEecCCCeeEEEEEe-CCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEE
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKA 522 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s-~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~i 522 (945)
.+........|+|||+. ++..+ .++ .|.+||..+.....+..+...+....|+| +|+.|+..+.+ ..|.+
T Consensus 287 ~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~ 362 (435)
T PRK05137 287 DSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGV 362 (435)
T ss_pred CCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEE
Confidence 56666778999999994 44443 333 57788855555555554555566677876 56777776543 35778
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC--ceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
||+..+... .+.. ...+..+.|+|||+.|+..+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 363 ~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 363 MKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 887554432 2222 23467889999999998776432221 4788888876554 33332 11 344456665
No 241
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.48 E-value=2.9e-13 Score=126.33 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhhCCCC-C--------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHH
Q 002264 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFF-N--------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (945)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~-~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (945)
.++|+.|||+.||...||.++|..+.+|+|+.. . =..+|.+|..|+.++|++.+..+.+.-.+. ...+.|
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~F 103 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELFF 103 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHHH
Confidence 578999999999999999999999999999987 2 247899999999999999999985332222 224899
Q ss_pred HHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcc-cCCchHHHHHHHHHHHhhccC
Q 002264 75 EIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSK-YGDTKTARGIMLIELKKLIEA 153 (945)
Q Consensus 75 ~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~~~~r~~l~~~l~~~~~~ 153 (945)
.+++|+++||++.+..++|++|++.++.|+...+++.++.|...|..--++.....+- +--....|.++.+.+...|-.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~ 183 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAILA 183 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888888888776544432221110 000346688888888776644
Q ss_pred CccccccccCCCCC-chHHHHHHHHHHHHH
Q 002264 154 NPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (945)
Q Consensus 154 ~~~~~~~~~~~~~p-~~rL~~ll~q~~~~q 182 (945)
..- .+ ..+|..|++.-+..|
T Consensus 184 ~~~---------~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 184 SQE---------HESEPKLPFLLKLISWAQ 204 (228)
T ss_pred Hhc---------ccccchHHHHHHHHHHHH
Confidence 221 11 457888885544444
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.48 E-value=7e-10 Score=112.34 Aligned_cols=376 Identities=13% Similarity=0.138 Sum_probs=205.9
Q ss_pred eeecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEE----Ee--CcCcEEEEEcCCCCccccccccccccc
Q 002264 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----GS--SNGEITLWELAMRDRLVSKPFKIWDMA 391 (945)
Q Consensus 318 v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llas----gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 391 (945)
+.|.... .+|......+...++..|-+-|+-..|+|+|+.+.++ |+ ..+.+.+.+.+.|+...-
T Consensus 53 IiFt~~D-dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi--------- 122 (668)
T COG4946 53 IIFTCCD-DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI--------- 122 (668)
T ss_pred EEEEech-HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE---------
Confidence 4444322 3888888888999999999999999999999974442 22 234577777777765421
Q ss_pred ccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc----EEEEEccCCcc-cccceeeccccccEEEEEEecCCCee
Q 002264 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLL 466 (945)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~----i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~ 466 (945)
..+ | ...-.-.-|+|||+.+++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||
T Consensus 123 --------Tyf-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg--- 183 (668)
T COG4946 123 --------TYF-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DG--- 183 (668)
T ss_pred --------EEe-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CC---
Confidence 112 2 112223569999999988754322 23344332111 11 11 23445555553 33
Q ss_pred EEEEEeCCC------------cEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee-
Q 002264 467 CVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR- 531 (945)
Q Consensus 467 ~l~s~s~d~------------~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~- 531 (945)
.++.|-.-- .=++|- ..|+....+....+.|++-.+. .++..+....||.=.+|..+-...-
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDl 260 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDL 260 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchh
Confidence 233332111 123555 2332333332223333322211 1123333344444444433221111
Q ss_pred -EEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE-------------------------------
Q 002264 532 -VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT------------------------------- 579 (945)
Q Consensus 532 -~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~------------------------------- 579 (945)
.....+ .-.+-..+.||+.++... .|.|++||..+.+..+.
T Consensus 261 rrHTnFt--dYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 261 RRHTNFT--DYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred hhcCCch--hccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 110001 111122345666655442 44566666543221110
Q ss_pred --------------------ec-cccCcceEEEEEcCCCCEEEEEECCC-cEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 580 --------------------YA-GFRKKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 580 --------------------~~-~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
++ ++.. .+.-..+..+++-++.|..|| .+-|+|.++++....... .+.|.++..
T Consensus 334 ~ia~VSRGkaFi~~~~~~~~iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---lg~I~av~v 409 (668)
T COG4946 334 YIALVSRGKAFIMRPWDGYSIQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---LGNIEAVKV 409 (668)
T ss_pred EEEEEecCcEEEECCCCCeeEEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC---ccceEEEEE
Confidence 00 1111 244445555666788888888 899999998876655433 347999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+|+|++++++.....|.+.|+.++...+ .... ..+-|...+|+|+++++|.+...+...
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~--idkS----~~~lItdf~~~~nsr~iAYafP~gy~t--------------- 468 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRL--IDKS----EYGLITDFDWHPNSRWIAYAFPEGYYT--------------- 468 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeE--eccc----ccceeEEEEEcCCceeEEEecCcceee---------------
Confidence 9999999999999999999999884322 1111 123588899999999998776644332
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
..|+++|+.. +....++.+ ...=.+-+|.|||++|...+.
T Consensus 469 ------------------q~Iklydm~~----~Kiy~vTT~-----ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 469 ------------------QSIKLYDMDG----GKIYDVTTP-----TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ------------------eeEEEEecCC----CeEEEecCC-----cccccCcccCCCCcEEEEEec
Confidence 6778888763 222222222 122245688999998876553
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.1e-11 Score=124.28 Aligned_cols=311 Identities=10% Similarity=0.116 Sum_probs=199.2
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.......++|++|+ ++|.+ .++.|.|++..++..+.. -....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578889999998 57765 478999999988753321 11227899999999999976
Q ss_pred E-----ECC-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC
Q 002264 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (945)
Q Consensus 424 ~-----~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 493 (945)
= ..+ ..+.+|+++++.... .+..-...-++..|+.|.. ++.=-..+.+.+|+..+.....-+-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 2 112 347899999953322 2222222226899999876 22222356899999333322222335
Q ss_pred CCCEEEEEeeecCCccEEEE-----EEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEEcCCCCEEEEE-eecCC---
Q 002264 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFSC-GTSKD--- 561 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~-~~~~d--- 561 (945)
...|+.+.++|.+....+++ .|.-+.|++|.+.......... .....-..+.|++-|.-|++. +.+-|
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 67788888888755455554 3455679999765222111111 111122457788877755433 22222
Q ss_pred ----CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 562 ----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 562 ----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
|+..++++++....... .....++|.++.|++++..++++ -.--.+.|||++ +.++..+.. ++=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V--~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSV--PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEE--ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccce
Confidence 35678888887333333 33334589999999999877664 366789999985 455555532 245899
Q ss_pred EEcCCCCEEEEEECC---CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 636 RFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 636 ~~sp~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
-|+|.|++++.+|-+ |.|-|||+.+. ..+..+... ..+-..|+|||++++++...
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~-------~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAA-------NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch-hhccccccC-------CceEEEEcCCCcEEEEEecc
Confidence 999999999998875 78999999885 444443322 23456899999998765443
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=8.6e-11 Score=130.76 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=189.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC--ccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP--ISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~i~~s~~g~~ 420 (945)
|-+++++.++-. +|+|| | ..-.|.+||+..+..+.. ++ +.+.+..|. +.+.. .+-+
T Consensus 6 ~~~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~l-----~~~~ 63 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVKL-----LSGK 63 (967)
T ss_pred ccccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh--hh-----------hhccccccccccccee-----ccce
Confidence 334566666655 55444 3 346799999998876632 11 112244450 11110 2334
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE--
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-- 497 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v-- 497 (945)
++++..-+.+..=+.... .+..-...|....+..+.+ .++.++.++.+.+|| ..+..+..........
T Consensus 64 ~v~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~ 134 (967)
T KOG0974|consen 64 IVTCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY 134 (967)
T ss_pred EEEEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEE
Confidence 555544333333222211 1112333444455666666 677777889999999 6665555544322211
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.++-+-.+.+.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||+++++++. |..+++|++.+.+..
T Consensus 135 ~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 135 SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVL 210 (967)
T ss_pred eEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----Ccceeeeeccccccc
Confidence 1222223345578999999999999998865555678899999999999999999999996 899999999998877
Q ss_pred e-EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 578 R-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 578 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
. +.-+|.. .+..++|.|+ .+++++.|.+.++|+.+. ..+..+..|.. ..|..++..++...+++++.|+.+++|
T Consensus 211 ~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 211 GCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred Ccccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhh
Confidence 6 5566766 7888899987 999999999999997654 44446665543 368999999999999999999999999
Q ss_pred ECCCC
Q 002264 657 ANAIG 661 (945)
Q Consensus 657 ~~~~~ 661 (945)
++...
T Consensus 286 ~l~~r 290 (967)
T KOG0974|consen 286 DLNGR 290 (967)
T ss_pred hhhcc
Confidence 98654
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=7.6e-11 Score=126.68 Aligned_cols=311 Identities=14% Similarity=0.185 Sum_probs=182.2
Q ss_pred EEEEEcC----CeEEEEEccCCCeeEEe---cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC--Cce--eeE
Q 002264 511 IFSTAID----GKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRT 579 (945)
Q Consensus 511 l~s~~~d----g~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--~~~--~~~ 579 (945)
++.|+.. +.|.+|+++........ .........++++|++++|+++.......+.|..|++.. +++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3455554 68888888443332221 123345667889999999999875322467888888765 333 223
Q ss_pred eccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CeeEEE---eec--------CCCCCCccEEEEcCCCCEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTS---TDA--------EGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~v~~sp~g~~l~~ 646 (945)
... .....+.++++|++++++++. .+|.|.++++.. +.+... +.. ........++.++|+|+++++
T Consensus 82 ~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 322 222456799999999999988 689999999987 444333 111 011234678999999999888
Q ss_pred EEC-CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC
Q 002264 647 TTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (945)
Q Consensus 647 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (945)
... ...|.+|++......+...... .......-..++|+|+|++++
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Y-------------------------------- 207 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAY-------------------------------- 207 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEE--------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEE--------------------------------
Confidence 754 3479999997653212110000 001122356789999998875
Q ss_pred CCCccccCCCCCCcccccceee-cCCcceee-ecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCC
Q 002264 726 DKPRTVDDVTDKPKPWQLAEIV-DSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSG 802 (945)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~ 802 (945)
++...+++|.++++.... .......+ .++...........++++|||++|.++.. .+.|.+|++.... +
T Consensus 208 ----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----g 279 (345)
T PF10282_consen 208 ----VVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----G 279 (345)
T ss_dssp ----EEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----T
T ss_pred ----EecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----C
Confidence 344455677777766110 01111111 12221112236789999999999877665 6889999873211 1
Q ss_pred ceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEec--cCceEEEEec-CCCCCeeE
Q 002264 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNM--MTFKVMTTFM-SPPPASTF 877 (945)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~--~~~~~~~~~~-~h~~~i~~ 877 (945)
.... +.. ... .......++++|+|++|++++ ++.|.+|++ ++|.+...-. ..-....|
T Consensus 280 ~l~~--------------~~~-~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 280 TLTL--------------VQT-VPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp TEEE--------------EEE-EEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred ceEE--------------EEE-EeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 1111 000 110 234478899999999999987 577999876 4666544432 23345677
Q ss_pred EEe
Q 002264 878 LAF 880 (945)
Q Consensus 878 l~~ 880 (945)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 766
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=9.1e-12 Score=123.21 Aligned_cols=272 Identities=11% Similarity=0.119 Sum_probs=190.7
Q ss_pred CCcEEEEEEeCCCCe-EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 344 GSTVISMDFHPSHQT-LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~-llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
...|+.++|--+++. ++...+.|..+............. .|+. .........|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~---------~~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDA---------KTVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccc---------cccccccccccchhhc--CCEEE
Confidence 447788888766653 333333566666666655443321 1222 1233455667766654 34677
Q ss_pred EEECCCcEEEEEccCCcccc-cceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-CCCceEEEecC------
Q 002264 423 VAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG------ 492 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~~~~~~~~~~~------ 492 (945)
+|-.+|.+.+|..+.+..-. ....+. -...+..+.-++.... ++++||.. ..+++|| ...+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78889999999998543111 011222 2355777777777775 67779998 8899999 55544433221
Q ss_pred -CCC--CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 493 -HEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 493 -~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
-.- .++++.|.+..+...|++++.-+.+++||.+.+.. +..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 112 34566776654468899999999999999987554 4577778889999999999999999875 889999
Q ss_pred EeCCCCceeeE-eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
||++.++.... +.+..+ .++++..+|.+.+++++|-|..++|+|+.+.+++....... .++++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 99999998877 666665 89999999999999999999999999999977766554433 4566666553
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.7e-10 Score=114.11 Aligned_cols=303 Identities=10% Similarity=0.088 Sum_probs=189.1
Q ss_pred CCeEEEEEccCCCeeE---EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCceeeEe--ccccCcceE
Q 002264 517 DGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTY--AGFRKKSNG 589 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~~~~--~~~~~~~~~ 589 (945)
++-|.+|++++..... .........+-++|+|+++.|.++...+ .++.|.-|.+ .+|++...- ..... ..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544333 2233445678899999999999887642 2455555544 446543322 11112 347
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEECCC-CeeEEEeecCCCCC----------CccEEEEcCCCCEEEEEEC-CCcEEEE
Q 002264 590 VVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGGLP----------NLPRLRFSKEGNLLAVTTA-DNGFKIL 656 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~----------~v~~v~~sp~g~~l~~~~~-dg~i~iw 656 (945)
.+++++++++++++. ..|.|.++.+.. |.+......-.|.+ -+....+.|++++|++.+- --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999987 678999999865 54433322111111 2788999999999998754 2379999
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
++..+. +...-... . ....--..++|+|+|++.+ ++...++
T Consensus 173 ~~~dg~-L~~~~~~~-v-~~G~GPRHi~FHpn~k~aY------------------------------------~v~EL~s 213 (346)
T COG2706 173 DLDDGK-LTPADPAE-V-KPGAGPRHIVFHPNGKYAY------------------------------------LVNELNS 213 (346)
T ss_pred EcccCc-cccccccc-c-CCCCCcceEEEcCCCcEEE------------------------------------EEeccCC
Confidence 998763 21111111 1 1122356799999999875 4555567
Q ss_pred CCccccccee-ecCCcceee-ecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 737 KPKPWQLAEI-VDSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 737 ~i~vw~~~~~-~~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
+|.+|..... ..-..++.+ .+|.......+..++.+++||++|.++.. ...|.+|.+..
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~------------------ 275 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP------------------ 275 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC------------------
Confidence 8888887753 111122222 45554456677889999999998888765 35777776642
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc--CceEEEEec-CCCCCeeEEEee
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM--TFKVMTTFM-SPPPASTFLAFH 881 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~--~~~~~~~~~-~h~~~i~~l~~s 881 (945)
.+|.+....... .+......+.|+++|++|++++ ++.|.+|..+ +|++-.... .......||.|.
T Consensus 276 --~~g~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 --DGGKLELVGITP-TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred --CCCEEEEEEEec-cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 222211100000 0334467889999999999998 3569998765 555533333 244557777775
No 248
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.7e-11 Score=121.36 Aligned_cols=244 Identities=10% Similarity=0.125 Sum_probs=179.8
Q ss_pred CCccEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccc---eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 405 VPISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQH---SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 405 h~~~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~---~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
-...|++++|.-+++ .+..++.|..+....+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 345788888887654 4444446666777776655443321 1233456677777775 34 5888899999999
Q ss_pred Ee-CC----CceEEEecCCCCCEEEEEeeecCCccEEEEEEcC--CeEEEEEccCCCeeEEecCCC---------CeEEE
Q 002264 480 WE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPG---------HWCTT 543 (945)
Q Consensus 480 wd-~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~ 543 (945)
|. .. ...+..+..+ ..+..+.-++. ...++++||.. ..+.+||+...+.++.-.... -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 99 42 3344444433 34555544433 33577789999 889999999886665433221 16788
Q ss_pred EEEcCC--CCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 544 MLYSAD--GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 544 ~~~s~~--~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+.|-+. ...+++++. -+.+++||.+.+ +++..|..... .+.++...|+++++++|...|.+..||++.+...
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 899887 788998885 889999999875 46667766555 7999999999999999999999999999999887
Q ss_pred EE-eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TS-TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~-~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.. +.+- .+.|.++..+|.+++++++|-|..+||+|+++.
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 76 5443 348999999999999999999999999999985
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=2.1e-11 Score=118.29 Aligned_cols=263 Identities=11% Similarity=0.187 Sum_probs=174.9
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccc-cccCcccccccccCCCccEEEEEEcCCCC--
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM-AACSLPFQASIFKDVPISVSRVAWSPDGN-- 419 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-- 419 (945)
..+-|.+|.|...|.+ ||||..+|.|.++.-..... ..+++... +.-...+-.-.--.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~---~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK---GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccce-EeecCCCCeEEEeecccccc---cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 3458999999999995 99999999999996433221 01111100 00001111100112246789999998654
Q ss_pred EEEEEECCCcEEEEEccCCcccc--------------------------------cceee-ccccccEEEEEEecCCCee
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLR--------------------------------QHSQI-DAHVGAVNDLAFAYPNKLL 466 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~--------------------------------~~~~~-~~h~~~v~~l~~s~~~~~~ 466 (945)
.++..+.|.+|++|.+....... +...+ .+|.--|.++.++.|+.
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-- 177 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-- 177 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--
Confidence 56667789999999886422110 00111 36778899999999998
Q ss_pred EEEEEeCCCcEEEEe--CCCce--EEEecCC-----CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe------e
Q 002264 467 CVVTCGDDKLIKVWE--LSGRK--LFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS------R 531 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd--~~~~~--~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~ 531 (945)
.++++. |=.|.+|+ ...+. +..++.+ ..-|++..|+|... ..++..+..|+|++.|++.... .
T Consensus 178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 667654 88999999 34433 2233333 34578888998754 6888889999999999984321 1
Q ss_pred EEecC----------CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC-CCCceeeEeccccCc-----------c--
Q 002264 532 VDYDA----------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRKK-----------S-- 587 (945)
Q Consensus 532 ~~~~~----------~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~-~~~~~~~~~~~~~~~-----------~-- 587 (945)
+.... --..|..+.|+++|+++++-. --+|.+||+ ...+++.+++.|..- .
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 11111 112678899999999999864 468999999 556777777655321 1
Q ss_pred -eEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 588 -NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 588 -~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
-..++|+.++.++++|+..+.+++|+...|.
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899888999999999999999966553
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=4.2e-10 Score=120.91 Aligned_cols=312 Identities=12% Similarity=0.156 Sum_probs=180.9
Q ss_pred EEEeecCCCCceEEEEeC--CCCceeeEeccccCcceEEEEEcCCCCEEEEEEC----CCcEEEEECCCC--ee--EEEe
Q 002264 554 FSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDNV--NI--LTST 623 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~--~~~~ 623 (945)
++++......+.|+.|++ .++++...-..........++++|++++|++..+ +|.|..|++... .+ +...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~ 82 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV 82 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee
Confidence 344442223467777776 5555433222112224566899999999999886 568988887763 33 3333
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCccccccc--cCC------ccccccCcceeeeecccccceec
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAV--ENP------PFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~--~~~------~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
...+. ....++++|++++|+++.. +|.|.++++.....+.... ..+ ..........++.++|+|+++++
T Consensus 83 ~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 83 PSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 32222 4578999999999998875 8999999998742222211 100 00111233567888999887753
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC-CcceeeecCCCCCCccceEEEEEe
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS-GQCRLVTMPESTDTSSKVVRLLYT 773 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s 773 (945)
. .-....|.+|++...... .....+.++ .......++|+
T Consensus 161 ~------------------------------------dlG~D~v~~~~~~~~~~~l~~~~~~~~~----~G~GPRh~~f~ 200 (345)
T PF10282_consen 161 P------------------------------------DLGADRVYVYDIDDDTGKLTPVDSIKVP----PGSGPRHLAFS 200 (345)
T ss_dssp E------------------------------------ETTTTEEEEEEE-TTS-TEEEEEEEECS----TTSSEEEEEE-
T ss_pred E------------------------------------ecCCCEEEEEEEeCCCceEEEeeccccc----cCCCCcEEEEc
Confidence 2 222256677776532210 011222232 45667899999
Q ss_pred cCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--
Q 002264 774 NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-- 850 (945)
Q Consensus 774 ~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-- 850 (945)
|+|+++.+... +++|.++++... .+.......+..... ... .......+++||||++|.++.
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~----~g~~~~~~~~~~~~~--------~~~---~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPS----DGSLTEIQTISTLPE--------GFT---GENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETT----TTEEEEEEEEESCET--------TSC---SSSSEEEEEE-TTSSEEEEEECT
T ss_pred CCcCEEEEecCCCCcEEEEeeccc----CCceeEEEEeeeccc--------ccc---ccCCceeEEEecCCCEEEEEecc
Confidence 99999877766 789999987621 122111111100000 011 123578899999999998886
Q ss_pred CCeEEEEecc--Cce--EEEEecCCCCCeeEEEeecCCCceEEEee-cCceEEEEecc--cceEEEEec-CCCcceeEEE
Q 002264 851 GGKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR--VDEVKSKLK-GHQKRITGLA 922 (945)
Q Consensus 851 d~~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~s~~~~~~lasg~-~dg~v~vwd~~--~~~~~~~l~-~h~~~V~~l~ 922 (945)
.+.|.+|+++ +++ .+..+.........++++| +|++|+++. .++.|.+|++. +|.+...-. ..-....||.
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 5789999984 333 3344443344589999999 788777776 56789999774 665443321 1233455555
Q ss_pred e
Q 002264 923 F 923 (945)
Q Consensus 923 ~ 923 (945)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 4
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.2e-11 Score=119.75 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=89.5
Q ss_pred CCceeEEeecCCCceEEecC---CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeec---CceEEEEeccc
Q 002264 831 EEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVRV 904 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s---d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~---dg~v~vwd~~~ 904 (945)
.++|.+++|+|+|+.+|+.. +.+|.+||++ ++.+..+. ...+..+.||| +|++|++|+. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 45799999999999876553 4679999996 66767764 56788999999 8999998874 46799999999
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecC------CceEEEEec
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGA------DAQVTLCVE 944 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~------Dg~i~vWdl 944 (945)
.+.+.... |. .++.++|+|||++|+|++. |+.++||+.
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 98888776 43 4789999999999999864 788999986
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.8e-10 Score=118.91 Aligned_cols=313 Identities=12% Similarity=0.210 Sum_probs=197.3
Q ss_pred CcceeecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC-----------cCcEEEEEcCCCCccccc
Q 002264 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-----------NGEITLWELAMRDRLVSK 383 (945)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~-----------dg~i~iwd~~~~~~~~~~ 383 (945)
..-+.|...|..+|.-.+. ..++.+-|. .|.-+.|||+.+| |+|=+. ...++|||+.+|.....
T Consensus 223 TYL~t~Hk~GI~lWGG~~f--~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs- 297 (698)
T KOG2314|consen 223 TYLVTFHKQGIALWGGESF--DRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS- 297 (698)
T ss_pred eEEEEEeccceeeecCccH--HHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccccchhcc-
Confidence 3335555555556765542 234555666 7999999999997 776432 25799999999987643
Q ss_pred ccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCC
Q 002264 384 PFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463 (945)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 463 (945)
|.+ +.+....-.-..||.|++|+|.-..+ .|.||+..+-..+.. +.+ .-..|....|+|.+
T Consensus 298 -F~~--------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 298 -FPV--------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRDFSWSPTS 358 (698)
T ss_pred -eec--------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccCcccCCCc
Confidence 221 22222223347999999999987765 599998765322211 111 33568889999998
Q ss_pred CeeEEEEEeCC-----CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE----------cCCeEEEEEccC
Q 002264 464 KLLCVVTCGDD-----KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDT 527 (945)
Q Consensus 464 ~~~~l~s~s~d-----~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~ 527 (945)
. +|+--... ..+-+-. .+++.+++-.-+ .|..+..++..+|.+|+.-- .-..+.|+.++.
T Consensus 359 ~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 359 N--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred c--eEEEEcccccCCcceEEEEecCccceeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 8 56533221 2344444 444444443323 35566666677777776532 112345666555
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-C---ceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
.........-...|...+|-|.|+.+++.+. .+...++.+|.+.+ . +++..+.. ...+.+.|+|.|++++++
T Consensus 435 KdIpve~velke~vi~FaWEP~gdkF~vi~g-~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 435 KDIPVEVVELKESVIAFAWEPHGDKFAVISG-NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVA 510 (698)
T ss_pred cCCCceeeecchheeeeeeccCCCeEEEEEc-cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEE
Confidence 4444333333456888999999999887764 33466788888773 2 33444433 246779999999999886
Q ss_pred E---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC------CCcEEEEECCCC
Q 002264 604 G---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAIG 661 (945)
Q Consensus 604 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~------dg~i~iw~~~~~ 661 (945)
+ ..|.+.++|+....+... ....|. ..+.+.|.|.|+++++++. |...++|+.+..
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~-~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDT-ASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EecccccceEEEecchhhhhhc-cCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 5 578999999875333222 222232 4688999999999999876 456677777543
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.1e-10 Score=120.92 Aligned_cols=293 Identities=14% Similarity=0.176 Sum_probs=194.6
Q ss_pred CCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 492 GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.+....+.|..+| ||+++ ++|..--.|++||+..-...+.-......|.-.-++.|-..++.... |..|.+..
T Consensus 49 e~p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~----DR~IefHa 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSP--DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN----DRTIEFHA 122 (703)
T ss_pred CCccccceeEecC--CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeec----Cceeeehh
Confidence 3566667777766 66765 55666778999999876666555555555655556655544444332 55555433
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.........++. .-..++++.-..-|++++....|+-++++.|..+..+..... .+++|..++...+|++|+.+
T Consensus 123 k~G~hy~~RIP~----~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 123 KYGRHYRTRIPK----FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTED 196 (703)
T ss_pred hcCeeeeeecCc----CCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEecccC
Confidence 211111111111 123355555445577777777899999999999888876643 89999999999999999999
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
|.|-+||.++... ...+.....
T Consensus 197 g~VEfwDpR~ksr-v~~l~~~~~--------------------------------------------------------- 218 (703)
T KOG2321|consen 197 GVVEFWDPRDKSR-VGTLDAASS--------------------------------------------------------- 218 (703)
T ss_pred ceEEEecchhhhh-heeeecccc---------------------------------------------------------
Confidence 9999999986621 111110000
Q ss_pred ccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecc
Q 002264 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (945)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (945)
+. ..++ ......|+++.|+.+|-.+++|.++|.+.|||+....
T Consensus 219 ------------v~-----------s~pg-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~------------- 261 (703)
T KOG2321|consen 219 ------------VN-----------SHPG-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK------------- 261 (703)
T ss_pred ------------cC-----------CCcc-ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-------------
Confidence 00 0000 0133468999999999999999999999999875432
Q ss_pred ccccCCCcccccccccCCCcCCceeEEeecCC--CceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d--g~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
++...-.+ ..-+|..+.|-+. +..+++.....++|||-.+|+....+.. ...+..+++-| ++-++
T Consensus 262 ---------pl~~kdh~--~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p-~sGm~ 328 (703)
T KOG2321|consen 262 ---------PLLVKDHG--YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVP-GSGMF 328 (703)
T ss_pred ---------ceeecccC--CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeec-CCceE
Confidence 11111111 3457788888664 4566666667799999999999988874 45599999999 77788
Q ss_pred EEeecCceEEEEeccc
Q 002264 889 AIGTEDSTIHIYNVRV 904 (945)
Q Consensus 889 asg~~dg~v~vwd~~~ 904 (945)
++|-+++.+..|=+..
T Consensus 329 f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 329 FTANESSKMHTYYIPS 344 (703)
T ss_pred EEecCCCcceeEEccc
Confidence 8998888777665553
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.5e-10 Score=127.64 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=142.9
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--c
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~ 476 (945)
+..+...+.+.+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44566789999999999999877643 368999998875432 2233344567899999995 333555555 5
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+||..+.....+..+........|+| ||+.++..+. +| .|.++|+.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 7888954445556666665566677766 5566655543 34 46666776655332 22223334467899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|+++++..+ ....+..+. +
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 887642 23446899999887654332221 12245899999999887643 35777787543 333443322 2
Q ss_pred CccEEEEcC
Q 002264 631 NLPRLRFSK 639 (945)
Q Consensus 631 ~v~~v~~sp 639 (945)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 566777876
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=6.2e-11 Score=114.68 Aligned_cols=162 Identities=19% Similarity=0.348 Sum_probs=113.9
Q ss_pred EEEEEEcCCCCEEEEEEC----------CCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 409 VSRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~----------dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
=..+.|+|+|++|+.-.. -|...+|.++....... .+. ...++|.+++|+|+|+.+.+++|..++.|
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~--~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE--SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc--eeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 346899999998875433 13355665533222111 222 24457999999999996445556678899
Q ss_pred EEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.+||.+++.+..+. ...++.+.|+| +|+++++++.+ |.|.+||.++.+.+..... ..++.++|+|||++++
T Consensus 86 ~lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 86 TLYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEE
Confidence 99997788887775 45678899987 56899988754 6799999997666655433 3478999999999999
Q ss_pred EEeec--CCCCceEEEEeCCCCceeeE
Q 002264 555 SCGTS--KDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 555 ~~~~~--~d~~~~i~iwd~~~~~~~~~ 579 (945)
+++.. ...++.++||+.. |+.+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEe
Confidence 88752 2246778999974 555443
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6e-10 Score=115.09 Aligned_cols=315 Identities=12% Similarity=0.090 Sum_probs=190.4
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.=+.+.|||.|.| |+|-.. .-|.+|--.+-..+.. + .| ..|.-+.|||+.+||+|-+
T Consensus 212 Tetyv~wSP~GTY-L~t~Hk-~GI~lWGG~~f~r~~R-------------------F-~H-p~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 212 TETYVRWSPKGTY-LVTFHK-QGIALWGGESFDRIQR-------------------F-YH-PGVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred eeeeEEecCCceE-EEEEec-cceeeecCccHHHHHh-------------------c-cC-CCceeeecCCccceEEEec
Confidence 4578999999996 887654 4578997554433321 1 14 3688999999999999865
Q ss_pred C-----------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 426 T-----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 426 ~-----------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
. ...++|||+.+|...+.+..+.+....-.-..||.|++ +++--.. .+|.||+ .+-.++-.-.-.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK--y~Arm~~-~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK--YFARMTG-NSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc--eeEEecc-ceEEEEecCceeeecccccC
Confidence 3 14699999999987775544433333333478999999 7776654 6788999 442222111112
Q ss_pred CCCEEEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC-----
Q 002264 494 EAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD----- 563 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~----- 563 (945)
-..|....|+|. +.+|+.-... .++.+-.+.+.+.+.....+.-.=..+-|-.+|.+|+.-.....+.
T Consensus 346 i~gIr~FswsP~--~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 346 ISGIRDFSWSPT--SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred CccccCcccCCC--cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 345666677774 3566543321 2344444444444443333322223456777888887654311111
Q ss_pred -ceEEEEeCCCCce-eeEeccccCcceEEEEEcCCCCEEEEEE---CCCcEEEEECCC-C---eeEEEeecCCCCCCccE
Q 002264 564 -SFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN-V---NILTSTDAEGGLPNLPR 634 (945)
Q Consensus 564 -~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~ 634 (945)
.++.|+.++.... +....- . ..+-..+|.|.|+.+++.+ ...++.+|.+++ . +++..+.. ...+.
T Consensus 424 f~n~eIfrireKdIpve~vel-k-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~ 497 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVEL-K-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANT 497 (698)
T ss_pred EeeEEEEEeeccCCCceeeec-c-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccce
Confidence 1345555554432 222222 2 2566789999999888755 346788888773 2 23344433 25689
Q ss_pred EEEcCCCCEEEEEE---CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 635 LRFSKEGNLLAVTT---ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 635 v~~sp~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
+.|+|.|++++.+. ..|.+.++|.............|. ..+.+.|.|.|++++++.....
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~------~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF------AATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc------ccccceECCCCCEEEEeeehhh
Confidence 99999999998764 468899999864211111111111 2456789999999987665443
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.8e-10 Score=126.82 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=148.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCe--EEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT--LLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~--llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (945)
+|-++...............+..-+|||||+. ++++...+| .|.+.++.+++... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 55555433444445555667788899999975 233544444 57777887775432 2
Q ss_pred cCCCccEEEEEEcCCCCEEEEEEC-CC----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFT-KH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~-dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
....+.....+|||||+.||..+. +| .+.+|++.++..-.......++.+.....+|+|||+. ++++...+|..
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~ 305 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRP 305 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCc
Confidence 223344557899999999887653 22 3444777653211111122223334567899999994 23333456655
Q ss_pred EEEe--C--CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC
Q 002264 478 KVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 478 ~vwd--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
.+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||
T Consensus 306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG 382 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDS 382 (428)
T ss_pred eEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCC
Confidence 5554 3 2344555555555667778877 56777766543 46899999877654433 223456788999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (945)
+.|+..+. ..+...|+++|+.+++........ . .+...+|+|-
T Consensus 383 ~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 383 LHLVYSAG-NSNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CEEEEEEC-CCCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 99887654 234678999999887765554322 1 3455677764
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.9e-10 Score=126.26 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=141.6
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC-C--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc--
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK-H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d-g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~-- 476 (945)
+..+...+.+.+|||||+.|+..+.+ + .|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466788999999999999876543 2 58889998875422 2222233457899999995 3345566665
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCe--EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.++|..+.....+..+.......+|+| ||+.++..+. ++. |.++|+.+++.. .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777854445566666665667778876 5566655543 444 555566555433 222233334457899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCeeEEEeecCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+..+.. .+...|.++|+.+++........ ......|+|+|+.++..+. +| .+++++. +|.....+..+. +
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 23446778898887654322221 1223579999998887664 33 3777787 455555554432 2
Q ss_pred CccEEEEcC
Q 002264 631 NLPRLRFSK 639 (945)
Q Consensus 631 ~v~~v~~sp 639 (945)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567788887
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=3.5e-09 Score=105.02 Aligned_cols=315 Identities=9% Similarity=0.078 Sum_probs=183.7
Q ss_pred EEEEeecCCCCceEEEEeCCC--CceeeEeccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CeeEEEeec
Q 002264 553 LFSCGTSKDGDSFLVEWNESE--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDN--VNILTSTDA 625 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~ 625 (945)
++.++..+.....|++|++.+ ++.............+-++|+|++++|+++.. +|.|..|.++. |++...-..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 444554444567799998873 22221111122225677999999999999864 57777777664 554332211
Q ss_pred CCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCcccccc--ccCCcc-----ccccCcceeeeecccccceeccCC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRA--VENPPF-----EALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~--~~~~~~-----~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
.....+-+.++++++|++++++.. .|.|.++.++....+... ...|.. ......+....+.|+++++++..-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 111124488999999999998876 588999998653122111 111111 111112556677777777653211
Q ss_pred CCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC
Q 002264 698 PANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777 (945)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 777 (945)
....|.+|++.+.......... ++ .......++|+|+++
T Consensus 165 ------------------------------------G~Dri~~y~~~dg~L~~~~~~~-v~----~G~GPRHi~FHpn~k 203 (346)
T COG2706 165 ------------------------------------GTDRIFLYDLDDGKLTPADPAE-VK----PGAGPRHIVFHPNGK 203 (346)
T ss_pred ------------------------------------CCceEEEEEcccCccccccccc-cC----CCCCcceEEEcCCCc
Confidence 1245667776643322221111 11 345678899999999
Q ss_pred eEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeE
Q 002264 778 GLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKI 854 (945)
Q Consensus 778 ~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i 854 (945)
+.....+ +++|.+|.+... .+++.. ++.-..+...+.+ .....++.+++||++|.++. .+.|
T Consensus 204 ~aY~v~EL~stV~v~~y~~~----~g~~~~--------lQ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA----VGKFEE--------LQTIDTLPEDFTG---TNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC----CceEEE--------eeeeccCccccCC---CCceeEEEECCCCCEEEEecCCCCeE
Confidence 8887777 899999987543 111111 1111111112332 55677899999999999997 4678
Q ss_pred EEEeccC--ceE--EEEecCCCCCeeEEEeecCCCceEEEeecC-ceEEEEecc--cceEEEEec-CCCcceeEEEec
Q 002264 855 SLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTED-STIHIYNVR--VDEVKSKLK-GHQKRITGLAFS 924 (945)
Q Consensus 855 ~iwd~~~--~~~--~~~~~~h~~~i~~l~~s~~~~~~lasg~~d-g~v~vwd~~--~~~~~~~l~-~h~~~V~~l~~s 924 (945)
.+|.+.. +++ +.....+........|++ ++++|+++..+ .+|.+|.++ +|++-.... .......||.|.
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 8887763 332 222223444478899999 78888777765 468888765 555433322 233344556553
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=4.8e-10 Score=123.37 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=141.1
Q ss_pred ccCCCccEEEEEEcCCCCEEE---EEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-
Q 002264 402 FKDVPISVSRVAWSPDGNYVG---VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK- 475 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~la---s~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~- 475 (945)
+......+.+-+|||||+.++ +...+| .|.+.++.+|+..+ +....+.....+|+|||+. ++++...+|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 333455677889999998532 343443 58888888876432 3334445567899999995 233333223
Q ss_pred ---cEEEEe-CC---CceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEcc--C-CCeeEEecCCCCeEEEE
Q 002264 476 ---LIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--T-MGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 476 ---~i~vwd-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~-~~~~~~~~~~~~~i~~~ 544 (945)
.+..|+ .. +.......+........+|+| ||+.|+..+ .+|...+|.+. . +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 344477 33 232222222223345667766 667666655 46766666543 2 22233344444566788
Q ss_pred EEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeeEE
Q 002264 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 621 (945)
.|+|||+.|+..+.. ++...|++||+.+++....... . ..+....|+|+|+.|+..+. ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999887642 3456899999998876554333 2 24566889999998886543 4578999998887655
Q ss_pred EeecCCCCCCccEEEEcCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g 641 (945)
..... +.+...+|+|-.
T Consensus 410 Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred eecCC---CcccCceecCCC
Confidence 54332 246778888743
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=1.7e-09 Score=109.58 Aligned_cols=230 Identities=8% Similarity=0.027 Sum_probs=163.1
Q ss_pred eCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE-EcC-CCCEEEEEECCCcE
Q 002264 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA-WSP-DGNYVGVAFTKHLI 430 (945)
Q Consensus 353 sp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~-~s~-~g~~las~~~dg~i 430 (945)
+.||++++.+. .|.|.+||..+.+... + ++..+.. ..........+..-+. |++ +|.+++..+. |..
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~lek---l---dI~lpl~--rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gka 343 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLEK---L---DIGLPLD--RKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKA 343 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCccee---e---ecCCccc--cccccccccCHHHhhhhhccCCCcEEEEEec-CcE
Confidence 55788876654 5889999988765432 1 1110000 0000000111222222 444 7899998876 667
Q ss_pred EEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-cEEEEeCCCceEEEecCCCCCEEEEEeeecCCcc
Q 002264 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
.+.+...+-.++ -+|.+.|.-..+..+++ -++.|..|| .+-++|..+..+..+...-+.|.++..++ +|+
T Consensus 344 Fi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~--dGK 414 (668)
T COG4946 344 FIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP--DGK 414 (668)
T ss_pred EEECCCCCeeEE-----cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC--CCc
Confidence 777765554332 26888899999998888 788999999 89999977777788888888999999866 678
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 589 (945)
+++.+.....+.+.|++++.....-....+-|+.+.|+|++++++.+-.++--...|+++|+..++......... .-.
T Consensus 415 ~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta--~Df 492 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA--YDF 492 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc--ccc
Confidence 899988888999999999988877777778899999999999999876533335679999999887665433221 223
Q ss_pred EEEEcCCCCEEEEEE
Q 002264 590 VVQFDTTQNHFLAVG 604 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~ 604 (945)
+-+|.|++++|+.-+
T Consensus 493 sPaFD~d~ryLYfLs 507 (668)
T COG4946 493 SPAFDPDGRYLYFLS 507 (668)
T ss_pred CcccCCCCcEEEEEe
Confidence 468999999988765
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-10 Score=113.23 Aligned_cols=250 Identities=14% Similarity=0.187 Sum_probs=169.5
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--ccccceeecccc------------ccEEEEEEecCCCeeEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~~~~~l~s 470 (945)
...-|.+|.|..+|.+||+|..+|.|.++.-.... .......++.|. ..|..+.|.++++.-.++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999643221 111222333443 4688999999887667788
Q ss_pred EeCCCcEEEEe--CCCceE-------------------EEe----------------cCCCCCEEEEEeeecCCccEEEE
Q 002264 471 CGDDKLIKVWE--LSGRKL-------------------FNF----------------EGHEAPVYSICPHHKENIQFIFS 513 (945)
Q Consensus 471 ~s~d~~i~vwd--~~~~~~-------------------~~~----------------~~~~~~v~~~~~~~~~~~~~l~s 513 (945)
.+.|++|++|. ..+... -.+ .+|.--|+++.++. |+..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns--D~Et~lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS--DKETFLS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC--ccceEee
Confidence 88899999998 222111 000 24666788888754 5566655
Q ss_pred EEcCCeEEEEEccCCCeeEEec---CC-----CCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeCCCCcee----eEe
Q 002264 514 TAIDGKIKAWLYDTMGSRVDYD---AP-----GHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIK----RTY 580 (945)
Q Consensus 514 ~~~dg~i~iwd~~~~~~~~~~~---~~-----~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~~~~----~~~ 580 (945)
..|-.|.+|+++....-+.+. .+ ..-|++..|+|..- .++..++ .|.|++-|++...+. +.+
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS----KGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS----KGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC----CCcEEEeechhhhhhcchhhhh
Confidence 468899999987655544322 11 12578888999654 3444443 899999999853221 111
Q ss_pred ccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEEC-CCCeeEEEeecCCC----------CCCc---cEE
Q 002264 581 AGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGG----------LPNL---PRL 635 (945)
Q Consensus 581 ~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~----------~~~v---~~v 635 (945)
....+ ..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.. ...| ..+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 11111 13667899999999988764 47999999 45666766665531 1122 458
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+|+.++.++++|+....++++++..|.
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCc
Confidence 899999999999999999999977663
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=4e-10 Score=126.12 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=138.4
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--c
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~ 476 (945)
+..+...+.+.+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999998875432 3345566778999999985 334555554 5
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+||..+.....+..+........|++ +|+.|+..+. ++ .|.++|+.+++. ..+.........+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555655555555667766 6677766554 33 577777765543 3344445566788999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeeEEEee
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (945)
+.+..+. +...|.+||+.++..... .... ......|+|+++.|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERVL-TDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEEc-cCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 8887521 234799999988654332 2211 233468999999998877543 35555543 44444443
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=9.5e-10 Score=112.83 Aligned_cols=349 Identities=13% Similarity=0.095 Sum_probs=212.7
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEE
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
+|...+......+....-++..+++||.|.+|++.. ...|.+|+-..+..+..+.. ..+..+.|+|.+++|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYLV 87 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec---CCceecccCcccceee
Confidence 454444333334444555788999999999999876 45689999887765555543 2578899999999999
Q ss_pred EEEC---------------CCcEEEEECCCCeeEEEeecCCCCCCcc-EEEEcCCCCEEEEEECCCcEEEEECCCCcccc
Q 002264 602 AVGE---------------DSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 602 ~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
+-+. ++.+.+||..+|..+..+.........+ -+.|+-+.+++|-.. ...+.|+++ ++.-.
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~- 164 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE- 164 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc-
Confidence 8653 3359999999999999987765422244 688898888877553 347999997 33111
Q ss_pred ccccCCcccccc-CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 666 RAVENPPFEALR-TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 666 ~~~~~~~~~~~~-~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.++....+ ..+....++|.|..-. +.+..+. .....+.+++|.+.
T Consensus 165 ----~~p~~~lr~~gi~dFsisP~~n~~~---------la~~tPE---------------------k~~kpa~~~i~sIp 210 (561)
T COG5354 165 ----EHPFKNLRPVGILDFSISPEGNHDE---------LAYWTPE---------------------KLNKPAMVRILSIP 210 (561)
T ss_pred ----cCchhhccccceeeEEecCCCCCce---------EEEEccc---------------------cCCCCcEEEEEEcc
Confidence 11222122 3456667777653210 0000000 12334566777765
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccc
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (945)
............ ..=..+.|.+.|.+++.-..-.+ .......+.....+++..... +...
T Consensus 211 ~~s~l~tk~lfk--------~~~~qLkW~~~g~~ll~l~~t~~-----------ksnKsyfgesnLyl~~~~e~~-i~V~ 270 (561)
T COG5354 211 KNSVLVTKNLFK--------VSGVQLKWQVLGKYLLVLVMTHT-----------KSNKSYFGESNLYLLRITERS-IPVE 270 (561)
T ss_pred CCCeeeeeeeEe--------ecccEEEEecCCceEEEEEEEee-----------ecccceeccceEEEEeecccc-ccee
Confidence 322111111111 11245778888887765332100 011111111222233332111 1110
Q ss_pred ccCCCcCCceeEEeecCCCceEEecC---CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecC---ceEE
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIH 898 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~s---d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d---g~v~ 898 (945)
. . -.++|..++|.|+++.+++.+ .-++.++|++.. .... .....=..+.||| .+++++.++-| |.|-
T Consensus 271 ~-~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~ 343 (561)
T COG5354 271 K-D--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGNIE 343 (561)
T ss_pred c-c--ccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccceE
Confidence 1 1 468899999999998887765 467999998854 4333 3455667889999 88888886655 6899
Q ss_pred EEecccceE-EEEecCCCcceeEEEecCCcceeeeec------CCceEEEEec
Q 002264 899 IYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSG------ADAQVTLCVE 944 (945)
Q Consensus 899 vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~~------~Dg~i~vWdl 944 (945)
+||....-. +..+.+-. ..-+.|+|||.++.+.. .|..+.||+.
T Consensus 344 i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 344 IFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 999876543 33666433 44568999999888754 3778999985
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.2e-10 Score=127.20 Aligned_cols=261 Identities=15% Similarity=0.115 Sum_probs=150.4
Q ss_pred hHHHhhhcCCCCCC--cceeecCCC--C----ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcC--cEEE
Q 002264 302 HEQLMKRLRPAPSA--EEVTYSSSR--H----QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITL 371 (945)
Q Consensus 302 ~~~~~~~~~~~~~~--~~v~~~~~~--~----~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg--~i~i 371 (945)
.+.++++++..++. ..+.|.... . .+|-.+.........+.+...+.+.+|||||++++.+...++ .|.+
T Consensus 167 ~d~i~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~ 246 (448)
T PRK04792 167 SDIVYEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFV 246 (448)
T ss_pred HHHHHHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEE
Confidence 34556666665422 224443322 1 133233222333445567788999999999997555544343 5888
Q ss_pred EEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE-EECCCc--EEEEEccCCcccccceeec
Q 002264 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQID 448 (945)
Q Consensus 372 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las-~~~dg~--i~vwd~~~~~~~~~~~~~~ 448 (945)
||+.+++... +....+.....+|||||+.|+. .+.+|. |.+||+.+++.. .+.
T Consensus 247 ~dl~tg~~~~--------------------lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt 302 (448)
T PRK04792 247 QDIYTQVREK--------------------VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RIT 302 (448)
T ss_pred EECCCCCeEE--------------------ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECc
Confidence 8988776421 1111223346899999998875 455664 777888876532 344
Q ss_pred cccccEEEEEEecCCCeeEEEEEeCCCc--EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCe--EEE
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKA 522 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s~d~~--i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~i 522 (945)
.+.......+|+|||+. +++++..++. |.++| .+++ ...+..........+|+| ||++|+..+. ++. |.+
T Consensus 303 ~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 303 RHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred cCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEEEecCCCCCcCeeECC--CCCEEEEEEecCCceEEEE
Confidence 45556778999999995 3334444444 55566 4444 333332222233456766 5566666554 443 455
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
+|+.++.... +... .......|+|||+.|+..+. .++...+++++. ++...+.+..... .+...+|+|
T Consensus 379 ~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 379 QDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 6766655432 2221 12234579999999987764 234456888887 4555555554433 455566765
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.6e-10 Score=127.47 Aligned_cols=236 Identities=12% Similarity=0.057 Sum_probs=143.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc--CcEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|-.+.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4433433344455667888999999999999755554333 368899998876432 122
Q ss_pred CCccEEEEEEcCCCCEEEE-EECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEE
Q 002264 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las-~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~v 479 (945)
..+.+...+|||||+.|+. ...+| .|.+||+++++.. .+..+........|+|||+. ++++...++ .|.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 2334557899999998874 44454 5888899887533 24445556777899999995 233333344 5667
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-C--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+| .+++ ...+...........|+| +|+.++..+.+ + .|.+||+.+++....... .......|+|||+.++.
T Consensus 316 ~d~~~g~-~~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGR-AERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCC-EEEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEE
Confidence 77 4454 333322222233456666 55677666543 3 477888887654332221 22235689999999988
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
.+. ..+...+++++... ...+.+..... .+...+|+|
T Consensus 391 ~~~-~~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATR-QQGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEe-cCCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 765 22355688888753 33334433222 345556665
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=3.1e-10 Score=126.96 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=141.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc--CcEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|-.+.........+.+...+...+|||||++++++...+ ..|++||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 4443333334455566777899999999999744443222 479999998875431 223
Q ss_pred CCccEEEEEEcCCCCEEEEE-ECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCC--cEE
Q 002264 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~--~i~ 478 (945)
+.+.+.+++|+|||+.|+.. +.++ .|++|++.++... .+..+........|+|||+ .++.++ .++ .|.
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIY 305 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEE
Confidence 44566779999999987754 4444 5888898876432 2334555556789999999 444433 334 577
Q ss_pred EEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++|..+.....+..+...+....|+| +|++++.++.++ .|.+||+.++.... +... .......|+|||+.|+.
T Consensus 306 ~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILY 381 (417)
T ss_pred EEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 77744444455554555667777766 567888877765 78888887754332 2222 22345689999999988
Q ss_pred EeecCCCCceEEEEeCCCCceeeEec
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.... ++...+++.+.. +.....+.
T Consensus 382 ~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 382 ATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEeC-CCcEEEEEEECC-CceeeECC
Confidence 7752 233456666643 44444443
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=1.7e-07 Score=111.58 Aligned_cols=446 Identities=11% Similarity=0.119 Sum_probs=245.8
Q ss_pred ccEEEEEEcCCCCEEEEEEC--CC--cEEEEEccCCcccccceeec-----cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 407 ISVSRVAWSPDGNYVGVAFT--KH--LIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~--dg--~i~vwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..+...+|.+..+.+..+.. .. .|.+...........+..+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 45677788776554433332 22 23444333322122222222 3456899999999998 56777778999
Q ss_pred EEE----eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-------------CC----------Ce
Q 002264 478 KVW----ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------------TM----------GS 530 (945)
Q Consensus 478 ~vw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------~~----------~~ 530 (945)
.+. +.....+.....-...|.+++|+| |+..|+..+.++++.+-+-+ .+ +.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 988 534444444444577899999988 55788888888887764311 00 00
Q ss_pred eEEecC------------------------CCCeEEEEEEcCCCCEEEEEeecCC-C-CceEEEEeCCCCceeeEecccc
Q 002264 531 RVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKD-G-DSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 531 ~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~~~d-~-~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
...+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-. |.+..+-....
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 000000 1224467899999999998876332 2 4789999965 66555444222
Q ss_pred CcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeeEEEeecC--CCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+ --..++|-|.|+++++... ...|.+|..+. -.-..+... .....|..+.|++|+..||+...| .|.+|...
T Consensus 257 g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~ 333 (928)
T PF04762_consen 257 G-LEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRS 333 (928)
T ss_pred C-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEee
Confidence 2 4456899999999988763 45677787543 333333332 233478999999999999998866 49999987
Q ss_pred CCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCc
Q 002264 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (945)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 739 (945)
+-.=-++..-.... ...+..+.|+|.... .+.....+|.+.
T Consensus 334 NYHWYLKqei~~~~---~~~~~~~~Wdpe~p~------------------------------------~L~v~t~~g~~~ 374 (928)
T PF04762_consen 334 NYHWYLKQEIRFSS---SESVNFVKWDPEKPL------------------------------------RLHVLTSNGQYE 374 (928)
T ss_pred CCEEEEEEEEEccC---CCCCCceEECCCCCC------------------------------------EEEEEecCCcEE
Confidence 65211111100000 011222555554221 112222223333
Q ss_pred ccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcc
Q 002264 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (945)
Q Consensus 740 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (945)
.++..-.... +-..+|+..-+++.-+...+.+-.+...-..|
T Consensus 375 ~~~~~~~v~~-------------------s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP------------------- 416 (928)
T PF04762_consen 375 IYDFAWDVSR-------------------SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP------------------- 416 (928)
T ss_pred EEEEEEEEEe-------------------cCCCCccCceEEEEEeCCeEEEecccccCCCc-------------------
Confidence 3332210000 00011112222333333344443322211111
Q ss_pred cccc-cccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEE--------EEec----------CCCCCeeEEE
Q 002264 820 LMAN-DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM--------TTFM----------SPPPASTFLA 879 (945)
Q Consensus 820 ~~~~-~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~--------~~~~----------~h~~~i~~l~ 879 (945)
++.. .+. -...|.+++|++++..+|+-. ||+|.+|........ ..+. .....+..++
T Consensus 417 PMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (928)
T PF04762_consen 417 PMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA 493 (928)
T ss_pred hHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence 0100 011 356899999999987666665 898888875432111 1111 1233478899
Q ss_pred eecCCCceEEEeecC---ceEEEEecccc---eEEEEecCCCcceeEEEecCCcceeeeecCCceEEE
Q 002264 880 FHPQDNNIIAIGTED---STIHIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941 (945)
Q Consensus 880 ~s~~~~~~lasg~~d---g~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~v 941 (945)
|.. +..+++....+ ..+.++++... ..+.....-.+.+..+...++...++.-..||.+..
T Consensus 494 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 494 WLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred EeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 988 66666666554 57888887433 233333333455666666665554555566777654
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=7e-09 Score=107.87 Aligned_cols=271 Identities=12% Similarity=0.113 Sum_probs=167.7
Q ss_pred CCCeEEEEEeC----cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC----
Q 002264 355 SHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---- 426 (945)
Q Consensus 355 ~g~~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~---- 426 (945)
++.+++++-.. .++|.+.|..+++.+.. +-.|.... .+ +||||+.|.++..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~------------------i~~G~~P~--~~-~spDg~~lyva~~~~~R 69 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGM------------------TDGGFLPN--PV-VASDGSFFAHASTVYSR 69 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEE------------------EEccCCCc--ee-ECCCCCEEEEEeccccc
Confidence 34444444333 28999999999876632 11122111 24 9999998887755
Q ss_pred ------CCcEEEEEccCCcccccceeecc----ccccEEEEEEecCCCeeEEEEE--eCCCcEEEEe-CCCceEEEecCC
Q 002264 427 ------KHLIQLYSYAGSNDLRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 427 ------dg~i~vwd~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
+..|.+||..+++.+..+..-.. .......++++|||+. ++.. +.+..|-+.| .+++.+..+.-.
T Consensus 70 ~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 70 IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 67899999999887764321101 1223457899999994 4433 4478999999 888888777642
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-----ecCCCCeE-EEEEEcC-CCCEEEEEeecCCCCceE
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWC-TTMLYSA-DGSRLFSCGTSKDGDSFL 566 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~~~~s~-~~~~l~~~~~~~d~~~~i 566 (945)
.. ..-. +.++..+ .+-+.||......++....... +......+ ..-.|.+ +|+++.+.. .|.|
T Consensus 148 ~~-~~vy---~t~e~~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V 217 (352)
T TIGR02658 148 DC-YHIF---PTANDTF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKI 217 (352)
T ss_pred CC-cEEE---EecCCcc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeE
Confidence 21 1111 1212222 2344566655544433222111 11100000 0113455 888777664 6899
Q ss_pred EEEeCCCC-----ceeeEeccc------cCcceEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCeeEEEeec
Q 002264 567 VEWNESEG-----TIKRTYAGF------RKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 567 ~iwd~~~~-----~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.+.|+... .....+... .......++++++++.+++.. ..+.|.++|..+++.+..+..
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 99996443 223222211 111234499999999988843 225799999999999999876
Q ss_pred CCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~ 661 (945)
.. .+..++++|||+ .|++.. .++.|.++|..++
T Consensus 298 G~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 298 GH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 43 679999999999 777666 5788999999888
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=8e-08 Score=100.07 Aligned_cols=285 Identities=8% Similarity=-0.013 Sum_probs=173.3
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee------cCCCCceEEEEeCCCCceeeEeccccC------
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~d~~~~i~iwd~~~~~~~~~~~~~~~------ 585 (945)
++|.+.|..+.+....+.....+- .+ ++||++.++++.. .+..+..|.+||..+.+.+..+....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999887777666543332 34 9999999988864 112367899999999999988875322
Q ss_pred cceEEEEEcCCCCEEEEEE-C-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002264 586 KSNGVVQFDTTQNHFLAVG-E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
.....++++|+|+++++.. . ++.|.+.|+.+++.+..+...+. ..-...+++..+ + -+.||......+.+...
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~-~-~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFF-M-HCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccE-E-EeecCceEEEEecCCCc
Confidence 1234689999999999877 4 78999999999999998876331 111222222222 1 12344333333322111
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
.. . .+..+++.
T Consensus 180 ~~--------------~-------------------------------------------------------~~~~vf~~ 190 (352)
T TIGR02658 180 PK--------------I-------------------------------------------------------KPTEVFHP 190 (352)
T ss_pred eE--------------E-------------------------------------------------------eeeeeecC
Confidence 00 0 00011110
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEec-CCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (945)
.. . .+ ...+ .|++ +|+++.+... |+|.+.|+........ ..|...+.....
T Consensus 191 ~~------~-~v-------~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~---------~~~~~~~~~~~~ 242 (352)
T TIGR02658 191 ED------E-YL-------INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL---------PAIEAFTEAEKA 242 (352)
T ss_pred Cc------c-cc-------ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec---------ceeeeccccccc
Confidence 00 0 00 0011 3345 6665555555 8888877543221110 111111100000
Q ss_pred ccccCCCcCCceeEEeecCCCceEEecC-----------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc-eEEE
Q 002264 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAI 890 (945)
Q Consensus 823 ~~l~~~~~~~~i~~l~~s~dg~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~-~las 890 (945)
... ..+...-+++++|++.+.++. .+.|.++|..+++.+..+.. ...+..++++| |++ +|++
T Consensus 243 ~~w----rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~-Dgkp~lyv 316 (352)
T TIGR02658 243 DGW----RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ-DAKPLLYA 316 (352)
T ss_pred ccc----CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC-CCCeEEEE
Confidence 000 123344599999998887732 24699999999999998873 45789999999 777 7765
Q ss_pred ee-cCceEEEEecccceEEEEec
Q 002264 891 GT-EDSTIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 891 g~-~dg~v~vwd~~~~~~~~~l~ 912 (945)
.. .++.|.|+|..+++.+.++.
T Consensus 317 tn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eCCCCCcEEEEECcCCeEEeeec
Confidence 65 67889999999999998873
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=7.9e-10 Score=107.70 Aligned_cols=202 Identities=15% Similarity=0.201 Sum_probs=134.1
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (945)
.+.||.+.|++...-|-.. -+++.+.|.++++|- ..++.-..+. ....+++++.+.. +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5778999999988888777 689999999999998 4444333332 2355677777655 5578999999999988
Q ss_pred EEcc----CCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 523 WLYD----TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 523 wd~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
+.+. ..........|...+..+.|+-....+++++. |..+.---.+.+..+..+.-... .....+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 8543 33344455667788999999999999999875 44443222233332221111000 00111111 1
Q ss_pred EEEEEECCCcEEEEECCC--CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 599 HFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+.|...|.|..-.+.. -.++..+.+ +...+.+++|.|....+.+|..|..+.+||+...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 445555666666655443 344555554 4569999999999999999999999999999654
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=1.4e-09 Score=106.06 Aligned_cols=247 Identities=15% Similarity=0.242 Sum_probs=172.6
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcC-CCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+.-+|.+.|++...-|.... +.+.+.|.+++||--. .++.-. .+......++++++++++
T Consensus 19 ~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wp------------------sI~~~mP~~~~~~~y~~e 79 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWP------------------SIYHYMPSPCSAMEYVSE 79 (404)
T ss_pred hhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCc------------------hhhhhCCCCceEeeeecc
Confidence 33457778888888887775 8899999999999643 333221 123335678999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCc-ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
.+.|++|-.+|++.-+.+...- .....+.+..|...|..+.|+.... .+++.+.|+.+.-.- ..|..+..+.- ..
T Consensus 80 ~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e--~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~ 156 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE--WVLSTGKDKQFAWHCTESGNRLGGYNF-ET 156 (404)
T ss_pred ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce--eEEEeccccceEEEeeccCCcccceEe-ec
Confidence 9999999999999888764321 1111224568999999999998888 889999998774333 55554422210 00
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEc--cCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
.-+++.+ +-.+.+.|...|.|..-.+ ..-..+..+.++...+.+++|.+..+.+.++.. +..+.+||+..
T Consensus 157 ~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~----d~~vi~wdigg 228 (404)
T KOG1409|consen 157 PASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS----DHSVIMWDIGG 228 (404)
T ss_pred cCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc----cCceEEEeccC
Confidence 1111111 1013445555565555433 344556678888999999999999999999886 88999999976
Q ss_pred Cce-eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 574 GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 574 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++- .....+|.+ .+..++..+--..+++++.||.|.+|+++.
T Consensus 229 ~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 229 RKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred Ccceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 553 345566665 677777777778999999999999999864
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=1.2e-08 Score=112.11 Aligned_cols=307 Identities=10% Similarity=0.022 Sum_probs=181.5
Q ss_pred ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~ 587 (945)
+..+++++.+|.+..+|..+++..............+.. ++..+++++. ++.++.+|..+|+.+........ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-e
Confidence 357888889999999999999888776665542223332 4566666654 88999999999998766543221 1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC---ccEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
.....+ .+..++.++.+|.|+.||..+|+.+........... ..+... .+..++.+..+|.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 111122 245788888899999999999998877654321100 011111 1246777888899999998887321
Q ss_pred cccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.. .... .+.+. . ..-++.+.
T Consensus 214 W~-~~~~--------------~~~g~-------------------------------------------~-~~~~~~~~- 233 (377)
T TIGR03300 214 WE-QRVA--------------LPKGR-------------------------------------------T-ELERLVDV- 233 (377)
T ss_pred ee-eccc--------------cCCCC-------------------------------------------C-chhhhhcc-
Confidence 11 0000 00000 0 00000000
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccc
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (945)
.... .+ .+..+++++.+|.+..||.... +. +|....+
T Consensus 234 ------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG------~~-------~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSG------RV-------LWKRDAS------ 270 (377)
T ss_pred ------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCC------cE-------EEeeccC------
Confidence 0000 11 1345666777788888765321 11 2322100
Q ss_pred ccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC-CeeEEEeecCCCceEEEeecCceEEEEec
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~~~~~~lasg~~dg~v~vwd~ 902 (945)
.....++ ++..+.+++ +|.+..+|..+++.+........ ...+.... +..|++++.+|.|+++|.
T Consensus 271 --------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 271 --------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred --------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCEEEEEEC
Confidence 0111222 344455555 89999999999988776632222 22333332 347888999999999999
Q ss_pred ccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
.+|+.+.++..+...+..--...++ .|+.++.||.|+.+
T Consensus 338 ~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999999988766544333223343 47788999988765
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=114.40 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=151.3
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEe------c------------CCCeeEEEEEeCCCc
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------~~~~~~l~s~s~d~~ 476 (945)
.|-+.++|....||.+++|+...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457899999999999999999876544332222334455555553 1 122237888999999
Q ss_pred EEEEe-CCCceEEEec--CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+|+ ..|+....+. .|.+.|.++.++. +-..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 7787777765 6899999998765 44689999999999999999888888888888889999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC-----CCEEEEEE-CCCcEEEEECCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAVG-EDSQIKFWDMDN 616 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 616 (945)
++++ +.|.+||+.+++.+.+|.+|.. .++++.|... |.+++++. .+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9885 5899999999999999999987 8999988776 66776644 556677776554
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.7e-09 Score=111.09 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=147.0
Q ss_pred CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-------------------
Q 002264 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------------------- 414 (945)
Q Consensus 354 p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~------------------- 414 (945)
|-+. ++|..+.||.++||+..+++......- ...-++..++..|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 4455 488888999999999988876432100 0011233333333
Q ss_pred -cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 415 -SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 415 -s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+.|-..++-|...|.|.+|++..|+.-..+ .-..|.+.|.++.++.+-. +|.|++.|+.+..|+ ..++.++.+..
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 223457788888999999999988754432 3357999999999998888 899999999999999 88888889998
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC-----CCEEEEEeecCCCCceEE
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~~~d~~~~i~ 567 (945)
....+.+++++| ||..+++++ +.|++||+++.+.+..+.+|.++|+++.|..+ |.++++... .+.-+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 889999999877 567888776 78999999999999999999999999999877 778776643 244566
Q ss_pred EEeCC
Q 002264 568 EWNES 572 (945)
Q Consensus 568 iwd~~ 572 (945)
+|-..
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 66544
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.1e-10 Score=117.89 Aligned_cols=245 Identities=13% Similarity=0.196 Sum_probs=169.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccc---cceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~---~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
..+.||...|..++--.+.+-+++++.|.+|++|.++.. ..+. ...++..|+.+|.++-|..+.+ +++++ ||
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DG 804 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cC
Confidence 357899999999988888899999999999999998742 2222 4457889999999999999887 56655 89
Q ss_pred cEEEEe-CCCceEEEecC--CCCCEEEEEeeecCCccEEEEE-EcCCeEEEEEccCCCeeEEec-----CCCCeEEEEEE
Q 002264 476 LIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTMLY 546 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~ 546 (945)
.|.+|| .-|+.+..... ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+. ++...+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999 88877653321 1222222222244344556555 778999999998876555443 34457889999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE-EECCCCeeEEEeec
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTSTDA 625 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 625 (945)
.+.|+.++++-. +|.|.+.|.++|+.+.....-.- ..-.++ .|....++....|..+.+ |...+|........
T Consensus 885 a~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 885 ADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999999998875 89999999999998876654322 111122 345567777778888988 98777765544433
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+.. +.. -...-|.-++++.....+.+|.-
T Consensus 959 ppe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 221 111 11123566777776677777754
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2.4e-10 Score=133.06 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=158.7
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....++-..|.++.=+|...+ .+||+.||.|++|.+..++.+.. |+ -.|. ..|+.+.|+.+
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQ 2262 (2439)
T ss_pred eEeecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhccc
Confidence 344456789999999999985 88999999999999988876642 11 1233 78999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe---CCCcEEEEe--CCCceEEEecC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEG 492 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s---~d~~i~vwd--~~~~~~~~~~~ 492 (945)
|+.+..+..||.+.+|.+.. +.....+.|.....+++|-. . .+++++ .++.+.+|| ..+..-..-..
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred CCceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeee
Confidence 99999999999999999872 33336778999999999986 3 566654 467899999 44443333378
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
|.+.++++++.|.. +.|++||.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++.
T Consensus 2335 H~~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 99999999998854 8999999999999999988776665543 33 4556777765 8999999999
Q ss_pred CCceeeEeccc
Q 002264 573 EGTIKRTYAGF 583 (945)
Q Consensus 573 ~~~~~~~~~~~ 583 (945)
....+.++...
T Consensus 2399 ~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2399 EFGLLHTFPSE 2409 (2439)
T ss_pred ccchhhcCchh
Confidence 88887777643
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=5.3e-08 Score=107.00 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=116.8
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
.++.++.++.+..+| .+|+.+..+............ ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 677788899999999 899988766543322222222 346788889999999999999988877655443222222
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce-----EEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-----GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
. .+..++.+.. ++.++.||..+|+.+-.+..... .. ....+. +..++++..+|.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 2345555543 88999999999988776654322 11 111122 347788888999999999999877
Q ss_pred EEeecCCCC--CC---ccEEEEcC--CCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~--~~---v~~v~~sp--~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
......... .. +..+.-+| .+..+++++.+|.+..||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 654321100 00 01111111 3557777888899999998877
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=1e-08 Score=98.05 Aligned_cols=250 Identities=16% Similarity=0.102 Sum_probs=158.4
Q ss_pred CCcEEEEEEeC---CCCeEEEEEeCcCcEEEEEcCCCCcccc-cccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 344 ~~~V~~v~fsp---~g~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
...+..+.|.. +|...|+-+..+|.|.++.......... ..+.. ..-....-.++.|++.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 34666777763 4554567777789999997643322110 00000 000111345789999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C-CCceEEE-ecCCCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEAP 496 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-~~~~~~~-~~~~~~~ 496 (945)
.++++..+|.+.+-+.... .++..+.++.|.-+++-..|+..... ++.+||.|+.+..|| . .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999986554432 33444468899999999999987765 899999999999999 3 5555544 5678999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC--EEEEEeecCCCCceEEEEeCCCC
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
|.+|.-+|. .+.++++|+.|-.|++||.+.......-..-.+.|..+.++|.-. .++++- -+-.++.+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM-----h~G~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACM-----HNGAKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHH-----hcCceEEEeccc
Confidence 999987664 568999999999999999986555444444456799999998543 333332 222445554433
Q ss_pred ce-----eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEE-EEECCC
Q 002264 575 TI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIK-FWDMDN 616 (945)
Q Consensus 575 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~ 616 (945)
.. ......|.. -...-.|......+++++ .|+.++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence 21 222233332 222233333335577765 566644 664433
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=4.6e-10 Score=130.84 Aligned_cols=202 Identities=13% Similarity=0.220 Sum_probs=164.6
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+..|-..|.++.=+|...+.++|+.||.|++|....+..+....+. +. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4446678889998999999999999999999999988877654443 33 8999999999999 788888899999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCee-EEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
...++....+.|........|.. ..+++++ .++.+.+||....... .....|.+.++++++.|..+.+++||
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 77888888889999888888764 3466654 5678999986543322 23367888999999999999999999
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
. +|.|++||++..+.+++++. ++ ...+|++|+..|.++||++.....+..+...
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 6 99999999999888877764 33 4678999999999999999988777766543
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=2.2e-08 Score=95.83 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=168.6
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC---CCC-EEEEEECCCcEEEEEccCCccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~---~g~-~las~~~dg~i~vwd~~~~~~~ 441 (945)
.|.+.+|++...+...... +.......+..+.|+. +|. .++-+..+|.|.++.....+..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4678888887665542111 1112345677788864 555 5666778899999987654332
Q ss_pred ccceeeccccc---cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce--EEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 442 ~~~~~~~~h~~---~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
..+..+..-.- .--++.|++.+. -++++-.+|.+.+-+ ..... ++.++.|.-..+...|+... .+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecC
Confidence 21112221111 245778999888 678888899988666 44443 34789999999999997654 48999999
Q ss_pred cCCeEEEEEccCCC-eeEE-ecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEE
Q 002264 516 IDGKIKAWLYDTMG-SRVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 516 ~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 591 (945)
.|+.+..||++..+ .+.. ...|...|.++.-+| .+.++++++. |..|++||.++ ++++..-.. .+.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 99999999999444 2222 345666788887776 5778888887 88999999984 566544332 3468888
Q ss_pred EEcCCCC-EEEEEECCCcEEEEECCCCeeE--EEeec-CCCCCCccEEEEcCCCCEEEEEE-CCCcEE-EEECCCC
Q 002264 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL--TSTDA-EGGLPNLPRLRFSKEGNLLAVTT-ADNGFK-ILANAIG 661 (945)
Q Consensus 592 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~-iw~~~~~ 661 (945)
..+|.-. .++.++.-+-.+|-+...+... ..+.. ..|.+-+..-.|.....++|+++ .|..++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888543 3333444444566665543322 11111 12212334444533345677765 366655 7765544
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.4e-10 Score=123.97 Aligned_cols=218 Identities=16% Similarity=0.236 Sum_probs=163.7
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-cEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIK 478 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-~i~ 478 (945)
+.+..|....+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|.++|+-+.=+.||.. .|.+++... -..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHH
Confidence 4477899999999999999999999999999999999998776 67899999999999999995 333333333 567
Q ss_pred EEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC----CCeEEEEEEcCCCCE
Q 002264 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSR 552 (945)
Q Consensus 479 vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~ 552 (945)
+|+ ..+...++|.+. .++.|+.. ...-+.|+......+||+.+.....++-.. ...-++..|+|+.+.
T Consensus 1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 999 556666666542 45566543 233445555567889999998776653221 123367889999988
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
++- +| .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+.....-..
T Consensus 1245 Iln-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq---- 1304 (1516)
T KOG1832|consen 1245 ILN-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ---- 1304 (1516)
T ss_pred Eee-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----
Confidence 874 44 4699999988888876553 233569999999999887 999999998887765433
Q ss_pred cEEEEcCCCCEEEEE
Q 002264 633 PRLRFSKEGNLLAVT 647 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~ 647 (945)
..|.|+..|..++..
T Consensus 1305 c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEEeccCccchhhh
Confidence 678899888876643
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.9e-07 Score=111.94 Aligned_cols=245 Identities=14% Similarity=0.125 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeec-----------cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 410 ~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-----------~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..++++++ ++.+++-+.++.|++||..+. .+....... ++-.....+++.++++. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 566666677888999997643 222111100 01123578999998873 33444456789
Q ss_pred EEEeCCCceEEEecCC-----------------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC---
Q 002264 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 537 (945)
+++|..+..+.++.+- -.....+++++. ++.++++.+.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999554555555321 012356788764 44677788888999999987654321 1110
Q ss_pred ------------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------------c--------C
Q 002264 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------R--------K 585 (945)
Q Consensus 538 ------------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------------~--------~ 585 (945)
-.....++++|+++.|+++.. +++.|++||+.++.......+. . -
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 123467999999997776654 4789999999876532111000 0 0
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-----------CCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02356889999998888889999999999887765433211 0112457899999999888888899999
Q ss_pred EEECCCC
Q 002264 655 ILANAIG 661 (945)
Q Consensus 655 iw~~~~~ 661 (945)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=4e-09 Score=112.58 Aligned_cols=223 Identities=15% Similarity=0.260 Sum_probs=154.7
Q ss_pred ccccccccCcccccccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCC
Q 002264 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK 464 (945)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 464 (945)
.+|++..+.......++.||+.+|+.+.|.|. ...+|+++.|-.|..||+.+.... +.....-...-..++|+-...
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeecccCc
Confidence 35555555555555678999999999999995 568999999999999999875432 223444455677899987666
Q ss_pred eeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeE
Q 002264 465 LLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWC 541 (945)
Q Consensus 465 ~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i 541 (945)
.+...+..+.|.+|| ..+.++..+++|...|+++.|..... ..+.+.+.||+|+.||.+.......... ...+|
T Consensus 172 --~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 172 --NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI 248 (1081)
T ss_pred --chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcc
Confidence 455566788899999 55678899999999999998865433 4688999999999999887655443322 33466
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCC---------C-CceeeEeccccCcceEEEEE--------cC--CCCEEE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNES---------E-GTIKRTYAGFRKKSNGVVQF--------DT--TQNHFL 601 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~---------~-~~~~~~~~~~~~~~~~~~~~--------~~--~~~~l~ 601 (945)
..-.+.|-|.-.+.--. .|+..+.+++.+ + .+++.+|.||.+ .|-..-| .. ..-.|+
T Consensus 249 w~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred eeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEE
Confidence 66667775554333221 123344444332 2 467889999987 3322222 11 224689
Q ss_pred EEECCCcEEEEECCC
Q 002264 602 AVGEDSQIKFWDMDN 616 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~ 616 (945)
+-+.|..+++|-+.+
T Consensus 326 TWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPIDS 340 (1081)
T ss_pred EeecCCceEeeeccH
Confidence 999999999998864
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=2.8e-09 Score=113.80 Aligned_cols=267 Identities=15% Similarity=0.189 Sum_probs=169.4
Q ss_pred cccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeecCCCCc--cccCCCCCcc-eEEeec-CCCcEEEEEEeCCCC
Q 002264 282 VLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ--TWSLDDLPRT-VAVSLH-QGSTVISMDFHPSHQ 357 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~~~~~-h~~~V~~v~fsp~g~ 357 (945)
..-+...|.+++.+.-....-+..-.+..+++...-.+.+...+. +|++...... ....++ |+..|+.+.|.|...
T Consensus 48 ~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p 127 (1081)
T KOG0309|consen 48 YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP 127 (1081)
T ss_pred EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCC
Confidence 344445555555544333332333334444443333344444444 9998765543 444455 999999999999998
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
-+||+++.|..|..||+.+.... +.. ...-...-..++|+-....+.+.+....|.+||...
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p----~ys--------------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRP----FYS--------------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred cceeeccccccceeeeccCCCcc----eee--------------eecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 89999999999999999875432 211 112234566789998444444445667799999998
Q ss_pred CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
|..... .+++|...|..++|..--.. .+.+++.|++|+.|| ... +.-........+|.--++.|-++|..+.-.-
T Consensus 190 gs~pl~--s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 190 GSTPLC--SLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred CCcceE--EecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 775443 67789999999999865433 688999999999999 332 2222333345567766777776665554433
Q ss_pred cCCeEEEEEcc----------CCCeeEEecCCCCeEEEEEEcCCC----------CEEEEEeecCCCCceEEEEeCCC
Q 002264 516 IDGKIKAWLYD----------TMGSRVDYDAPGHWCTTMLYSADG----------SRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 516 ~dg~i~iwd~~----------~~~~~~~~~~~~~~i~~~~~s~~~----------~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
.+..+.+++.+ ....+..+.+|...|....|-..+ -.|++-+. |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk----D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK----DQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec----CCceEeeeccH
Confidence 33455444332 234566788887766555553321 24677664 88999998764
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=1.8e-08 Score=96.83 Aligned_cols=249 Identities=16% Similarity=0.216 Sum_probs=154.9
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--ccccceeecccc------------ccEEEEEEecCCCeeEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~~~~~l~s 470 (945)
....|+++.|...|.||++|...|.|.+|.-.... ..+.+..+++|. ..|..+.|..++..-.|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999989999999765432 122222455554 3588899988766557777
Q ss_pred EeCCCcEEEEeCCCceEEEecC----------CCCCEEEEEeeecCCccEEE-EEE-cCCeEEEEEccCCCeeEEecCCC
Q 002264 471 CGDDKLIKVWELSGRKLFNFEG----------HEAPVYSICPHHKENIQFIF-STA-IDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 471 ~s~d~~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~-s~~-~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
.+.|++|++|..-.+.+..... ..+++++.. .++. -.+ .|..|... .+...-..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~-------~l~lprls~hd~iiaa~-----p~rvyaNaH~ 172 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK-------ELLLPRLSEHDEIIAAK-----PCRVYANAHP 172 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH-------HhhcccccccceEEEec-----cceeccccce
Confidence 8889999999933322221110 112222110 0000 000 01111111 1111224566
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee---eEeccccC----cceEEEEEcCCC-CEEEEEECCCcEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRK----KSNGVVQFDTTQ-NHFLAVGEDSQIK 610 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~---~~~~~~~~----~~~~~~~~~~~~-~~l~~~~~dg~i~ 610 (945)
..+.+++++.|...++++- +-.|.+|++.-.... ..+..+.. ..+++..|+|.. +.+...+..|.|+
T Consensus 173 yhiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 173 YHINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred eEeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 6789999999999999874 778999998643211 11222221 247778899865 5566677899999
Q ss_pred EEECCCCee------EE--EeecC------CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC
Q 002264 611 FWDMDNVNI------LT--STDAE------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (945)
Q Consensus 611 iwd~~~~~~------~~--~~~~~------~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (945)
+-|++...+ +. .+... +-...|..+.|+++|+++++-+.- +++|||....+.++++..-|
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechH
Confidence 999984221 11 11110 112468899999999999987654 89999998887777666544
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=4.8e-09 Score=108.07 Aligned_cols=292 Identities=9% Similarity=0.087 Sum_probs=180.8
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+|...|..++--.+.+. ++++++|.+|++|.++........ ...+..+..|+.+|.++.|-.+
T Consensus 729 ~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t------------saCQfTY~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT------------SACQFTYQAHKKPIHDIGFLAD 795 (1034)
T ss_pred ecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc------------ceeeeEhhhccCcccceeeeec
Confidence 445679999999876666554 889999999999998753221110 0012346789999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCceEEEec----
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFNFE---- 491 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~---- 491 (945)
-++++++ ||-|.+||.--|..+..+..-..| +.+..+.--++ ...++++.++...+|+++| ..+.....++
T Consensus 796 lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 796 LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred cceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 9999877 788999998777655433222223 23333333343 3332455558899999999 7777665554
Q ss_pred -CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE-E
Q 002264 492 -GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE-W 569 (945)
Q Consensus 492 -~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i-w 569 (945)
+....+.++++.+ .|+.++++-.+|.|.+.|.+++..+-...........++ .|..+.++.... +..+.+ |
T Consensus 873 ~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHslaVnW 945 (1034)
T KOG4190|consen 873 PGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLAVNW 945 (1034)
T ss_pred CCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeEeee
Confidence 3345678888866 457899999999999999998876654443322222222 244445554432 666666 7
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
...++........... +.. ....-|..++++...+.+.+|.-.. ...+..+....-.+..++++.-|-..-+.
T Consensus 946 haldgimh~q~kpppe-pah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen 946 HALDGIMHLQDKPPPE-PAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred hhcCCeeeeccCCCCc-chh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhh
Confidence 7666544433332211 111 1111245677777666777774221 11222333333334567888888666667
Q ss_pred EEECCCcEEE
Q 002264 646 VTTADNGFKI 655 (945)
Q Consensus 646 ~~~~dg~i~i 655 (945)
.|...|.|.+
T Consensus 1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred ccCCCCceee
Confidence 7888888765
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=3.5e-07 Score=100.04 Aligned_cols=215 Identities=14% Similarity=0.001 Sum_probs=127.8
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC---cCcEEEEEcCCCCcccccccccccccccCccccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (945)
+|-.+..-......+.. +.+....|||||+.+++..+. +..|.++|+.+++... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55555433333333333 388899999999863443332 3578889998876532 22
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-CC--CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-TK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~ 478 (945)
...+.....+|||||+.|+... .+ ..|.++++.+++. + .+..+........|+|||+.+++.+ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 2445566788999998877543 33 4688888877653 2 2333333344568999999644443 3333 577
Q ss_pred EEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 479 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
+.|..+.....+...... ...|+| +|+.++..+.. ..|.+.|+.++.... +... .......|+||
T Consensus 305 ~~dl~~g~~~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 305 MKKLNSGSVEQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSD 378 (419)
T ss_pred EEECCCCCeEeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCC
Confidence 777444333333322111 236665 66777666543 257777877765433 3322 22336889999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
|+.++..+.. .+...+.+.++...
T Consensus 379 G~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEcc-CCcEEEEEEecCCC
Confidence 9999887643 23455777777543
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=8.2e-07 Score=108.14 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=157.4
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC-
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~- 426 (945)
..+++++++..++++-+..+.|.+||... +.+.. +. ....... ..-..-.++-.....+++++++..|.++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~--ig--~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQ--IG--STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEE--Ec--cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46789886555777777788999999754 32210 00 0000000 000000112234678999999887666544
Q ss_pred CCcEEEEEccCCccccccee-------eccc-------cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec
Q 002264 427 KHLIQLYSYAGSNDLRQHSQ-------IDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~-------~~~h-------~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~ 491 (945)
++.|+++|..++.. ..+.. +.+. -...+.++|+|++.. ++++.+.++.|++|| .++. +..+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~-v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGV-TRVFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCe-EEEEe
Confidence 56799999877532 21100 0000 113468999995443 677778889999999 4443 33332
Q ss_pred CC---------------CCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCeeEEecC-------------C-----
Q 002264 492 GH---------------EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDA-------------P----- 537 (945)
Q Consensus 492 ~~---------------~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~----- 537 (945)
+. -.....+++++ ++. ++++.+.++.|++||++++........ .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 21 12345678876 444 566667789999999887653221100 0
Q ss_pred ---CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------------cCcceEEEEEcCCCCEEEE
Q 002264 538 ---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLA 602 (945)
Q Consensus 538 ---~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~ 602 (945)
......++++++|+.+++-+ .++.|++||..++......... .-.....++++++|+.+++
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADS----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEEC----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 01235789999998766655 3889999999887655332110 0013567899999998888
Q ss_pred EECCCcEEEEECCCCee
Q 002264 603 VGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 603 ~~~dg~i~iwd~~~~~~ 619 (945)
-+.++.|++||+.++..
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999998765
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=8.4e-07 Score=97.81 Aligned_cols=308 Identities=10% Similarity=0.040 Sum_probs=172.0
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC----------eE-EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----------WC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~i-~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..+++++.+|.+..+|..+++.......... .+ ..+.. ++..++.++. ++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 4677777888888888888888776654331 00 01111 3445555553 788999999999987
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC---CccEEEEcCCCCEEEEEECCCcEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
-....... ......+. +..+++++.+|.++.+|..+|+.+.......... ...+... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 76654322 11111222 4577788889999999999999988776432100 0011111 233566777888999
Q ss_pred EEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCC
Q 002264 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (945)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (945)
.+|..++...-+ .... .|.+.
T Consensus 219 a~d~~~G~~~W~-~~~~--------------~~~~~-------------------------------------------- 239 (394)
T PRK11138 219 AVLMEQGQLIWQ-QRIS--------------QPTGA-------------------------------------------- 239 (394)
T ss_pred EEEccCChhhhe-eccc--------------cCCCc--------------------------------------------
Confidence 888888732111 0000 00000
Q ss_pred CCCC-cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 735 TDKP-KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 735 d~~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
..+ +++++ ...++ + .+..++.++.+|.+..+|... |+. +|
T Consensus 240 -~~~~~~~~~-------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~t------G~~-------~W 280 (394)
T PRK11138 240 -TEIDRLVDV-------------------DTTPV----V--VGGVVYALAYNGNLVALDLRS------GQI-------VW 280 (394)
T ss_pred -cchhccccc-------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCC------CCE-------EE
Confidence 000 00000 00011 0 123355555566666555322 111 22
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCC-CCeeEEEeecCCCceEEEee
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~~~~~~lasg~ 892 (945)
....+ ....+.. .+++.++...+|.+..+|..+++.+....... ....+.... ++ .|+.++
T Consensus 281 ~~~~~--------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~ 342 (394)
T PRK11138 281 KREYG--------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGD 342 (394)
T ss_pred eecCC--------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEe
Confidence 22110 0111222 23444444448999999999998776543211 122333333 33 677889
Q ss_pred cCceEEEEecccceEEEEecCCCcceeE-EEecCCcceeeeecCCceEEEEecC
Q 002264 893 EDSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 893 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.||.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.+++|
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeCC
Confidence 9999999999999988877644333332 222 24467788999999988865
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=2.7e-06 Score=82.35 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=138.2
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCC--cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEE
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 489 (945)
++.+.+|+.||.- .|..|.|=..+.. ..+......+.....-..++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5778899999987 4556666655432 11222222223333457799999999 89999999999999977766665
Q ss_pred ecCC-------CCCEEEEEeeecCC----ccEEEEEEcCCeEEEEEccCC-----CeeEEecC---CCCeEEEEEEcCCC
Q 002264 490 FEGH-------EAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (945)
Q Consensus 490 ~~~~-------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~~~~s~~~ 550 (945)
+... ...|.++.|..... ...|++-..+|.++-|-+..+ .....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 5432 23566666643221 135777788888887776332 12223222 34589999999999
Q ss_pred CEEEEEeecCCCCce-------EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 551 SRLFSCGTSKDGDSF-------LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+.|+++|.....++. +.-|.+-++.+- .....+.+...-.... +..+|.+-+.......
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-----------yk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-----------YKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc-----------EEEccccCcccccccc---ccceeeccceeeeecc
Confidence 999988863322211 222222211111 1000111111100111 1223443332222211
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
....+.|..+..||||+.||+...+|.|.+|++.+- ...+.+.
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~ 268 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWK 268 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccc
Confidence 122347999999999999999999999999999765 3344443
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=9.1e-07 Score=83.76 Aligned_cols=252 Identities=13% Similarity=0.019 Sum_probs=152.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCC-----CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPS-----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~-----g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (945)
+|++...+....... +.+.|.|. -. +||.|+..|...+|...+.+... ++
T Consensus 56 i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~-~la~gG~~g~fd~~~~~tn~~h~----~~-------------- 110 (344)
T KOG4532|consen 56 INSHYSNPKGIVEFY------TGMTFTPGSFINKCV-TLADGGASGQFDLFACNTNDGHL----YQ-------------- 110 (344)
T ss_pred eccccCCchhhEEee------ecccccchHhhcccc-EEEeccccceeeeecccCcccce----ee--------------
Confidence 566655553332222 44556552 22 48999999999999998765431 11
Q ss_pred ccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccc--cEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
...|...|+-+.=.-+ .--+..++.|.++++.+++.+..-. .-|.. .+.++++++|++ ++++.+....|-
T Consensus 111 cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 111 CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVF 183 (344)
T ss_pred ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcce
Confidence 1223332222211111 2245667889999999988654322 12333 388999999999 889999888999
Q ss_pred EEe--CCCceEEE--ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-----EecCCCCeEEEEEEcCC
Q 002264 479 VWE--LSGRKLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-----DYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 479 vwd--~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~~~~s~~ 549 (945)
.|. .+++.+.. .....+.-.+..|+. +...++++..||++.|||++...... +...|.+.+..+.|++-
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~--~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSE--NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeecc--CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence 988 44444433 222333344555544 55789999999999999998765443 23346778999999986
Q ss_pred CCE-EEEEeecCCCCceEEEEeCCCCceeeEeccccC-------cceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 550 GSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 550 ~~~-l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
|.. |+.-+. +-+.+.+.|+++++-.+.+....+ ..+....|+.++..+.+.+++ .+.-|++.+
T Consensus 262 g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 262 GLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred CcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 542 222221 367899999999876554433222 124455566655555554433 234455443
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=2e-06 Score=94.13 Aligned_cols=198 Identities=10% Similarity=-0.014 Sum_probs=123.9
Q ss_pred cEEEEEEcCCCCE-EEEEEC---CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe
Q 002264 408 SVSRVAWSPDGNY-VGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~~g~~-las~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd 481 (945)
.+....|||||+. ++..+. +..|.++|+.+|+... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 664443 3468999998876433 3234555677889999986 34444444 4577778
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..+.....+..+........|+| ||+.|+..+. .+ .|.+.|+.+++..... ..+.. ...|+|||+.++..+.
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCCc--CceECCCCCEEEEEEc
Confidence 44444556655544334456766 5666655553 33 5666777765553322 22221 2489999999988775
Q ss_pred cCC-----CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCe
Q 002264 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVN 618 (945)
Q Consensus 559 ~~d-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~ 618 (945)
..+ +...|.+.|+.++.......+. ......|+|+|+.++..+.+ ..+.+.++....
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 322 1247899999888754433321 22347899999988876632 236667775543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=5.1e-08 Score=97.82 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=111.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+..+.++|.|+ +||++..+....++++...... .+.++. ..+..-...++.+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eecccCcceeeeeeccceEEEEeecC
Confidence 556667788887 6888887777777776554331 111111 11122223344444333333333344
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~~~~~v~~~~~~ 503 (945)
....+.+|+...+.+. .+-||-+.+++++|+||++ +++++..|..|++-. ..-..+..| -||+..|..+++.
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556677776654333 3558999999999999999 899999999999977 433344333 5799999999976
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEec
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (945)
+ +..|+++|.|+++++||+.++.....+.
T Consensus 204 ~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c---CceeeecCCCCcEEEEecccCCcccccc
Confidence 4 3579999999999999999988775443
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.78 E-value=4.5e-06 Score=80.85 Aligned_cols=255 Identities=13% Similarity=0.151 Sum_probs=134.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCC--CeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc
Q 002264 591 VQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
++.+.+|+.|++. .|..|.|-..++ ...+.....+. ....-..++||||+..||.+...|+|++||+... .+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 4556777666554 455666655443 12333333222 2235678999999999999999999999999754 33222
Q ss_pred ccCCcc-ccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccccee
Q 002264 668 VENPPF-EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (945)
Q Consensus 668 ~~~~~~-~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 746 (945)
-..... ......|..+.|-+... ...-...+++-..+|.++-|-+...
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~-------------------------------s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKK-------------------------------SAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred CcccccCCccccceeeeEeecccc-------------------------------ccccceeEEEEeccceeeeEEEEcc
Confidence 111111 11112233333321110 0011122344445566666665332
Q ss_pred ecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCc-eeeeeccccccCCCcccccccc
Q 002264 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK-ATASAVPQHWLPSSGLLMANDV 825 (945)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 825 (945)
...+......+.........|.++.++|..+.|+++|.... .++. ......+..|.+-++
T Consensus 130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------------~~~~s~a~~~GLtaWRiL~~------- 190 (282)
T PF15492_consen 130 TNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------------QDGMSKASSCGLTAWRILSD------- 190 (282)
T ss_pred cCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------------CCccccccccCceEEEEcCC-------
Confidence 22222222222222335678999999999988887776411 0000 000111222222211
Q ss_pred cCCCcCCceeEEeecCCCceEEecCCC------eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEE
Q 002264 826 AGVNLEEAVPCIALSKNDSYVMSATGG------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (945)
Q Consensus 826 ~~~~~~~~i~~l~~s~dg~~la~~sd~------~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~v 899 (945)
+|..+.+....++ +..+|.+.+.+...........|..|..|| ||.+||+...+|.|.+
T Consensus 191 --------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 191 --------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSL 255 (282)
T ss_pred --------------CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEE
Confidence 1222222211111 124455444333222223456799999999 9999999999999999
Q ss_pred EecccceEEEEec
Q 002264 900 YNVRVDEVKSKLK 912 (945)
Q Consensus 900 wd~~~~~~~~~l~ 912 (945)
|++.+-.+...+.
T Consensus 256 W~iPsL~~~~~W~ 268 (282)
T PF15492_consen 256 WEIPSLRLQRSWK 268 (282)
T ss_pred EecCcchhhcccc
Confidence 9999877666554
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=4.9e-06 Score=83.42 Aligned_cols=254 Identities=14% Similarity=0.169 Sum_probs=153.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC-cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..-.++.+|.....++.+-..| ...+||..+++..... + .-..+.|.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~----~-------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL----W-------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE----c-------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 3446788886555788887776 4678999998876421 0 0112345666 5899999999986
Q ss_pred E-----CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEE
Q 002264 425 F-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~ 499 (945)
- ..|.|-|||... .++.+.++..|.-.-..+.+.|||+. |+.+ +|-|.---.+|+....+......
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~t--LvVA--NGGI~Thpd~GR~kLNl~tM~ps--- 139 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGET--LVVA--NGGIETHPDSGRAKLNLDTMQPS--- 139 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCE--EEEE--cCCCccCcccCceecChhhcCCc---
Confidence 3 357899999983 23444467777777788999999984 4443 22221111233332222211111
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--e--cCCCCeEEEEEEcCCCCEEEEEeecCC---CCceEEEEeCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--Y--DAPGHWCTTMLYSADGSRLFSCGTSKD---GDSFLVEWNES 572 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~--~~~~~~i~~~~~s~~~~~l~~~~~~~d---~~~~i~iwd~~ 572 (945)
+. ..|..+++.+.. + ..+...|..+++.++|..++..-...+ .-..+.+++..
T Consensus 140 ----------L~----------~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 140 ----------LV----------YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred ----------eE----------EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 12 222222222222 2 234557889999999887766543221 11233344332
Q ss_pred CCceeeEeccc------cCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 573 EGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 573 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
+....+... -...+.+|++++++..+++.+ ..|.+.+||..+++.+...... .+..++..+++ +++
T Consensus 200 --~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 200 --GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLV 272 (305)
T ss_pred --CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEE
Confidence 222222211 112688999999999887776 6788999999999999887654 45778877776 555
Q ss_pred EEECCCcE
Q 002264 646 VTTADNGF 653 (945)
Q Consensus 646 ~~~~dg~i 653 (945)
+.+. |.+
T Consensus 273 ssG~-G~~ 279 (305)
T PF07433_consen 273 SSGQ-GQL 279 (305)
T ss_pred eCCC-ccE
Confidence 5443 443
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=1.2e-07 Score=91.14 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=87.1
Q ss_pred CcCCceeEEeecCCCceEEecCCCeEEEEeccCce---EEEEecCCCC-----CeeEEEeecCCCceEEEeecCceEEEE
Q 002264 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK---VMTTFMSPPP-----ASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (945)
Q Consensus 829 ~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~---~~~~~~~h~~-----~i~~l~~s~~~~~~lasg~~dg~v~vw 900 (945)
.|...|.++.|..|...+.++.|=+|.+|+++-.. .+..++.|.- -|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 48888999999999999999989999999976321 2344555543 389999999777788888999999999
Q ss_pred ecccceE------EE--E--------ecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 901 NVRVDEV------KS--K--------LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 901 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|++...+ +. + +.+-...|..+.|+++|+++++-+. -+|++||.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 9984321 11 1 1122356888999999999996653 46999996
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.8e-06 Score=81.89 Aligned_cols=208 Identities=5% Similarity=-0.077 Sum_probs=135.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|............-.|...|+-+.=--+.+.-+..++.|.++++.++..+.... .-|.
T Consensus 98 ~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---------------------~~h~ 156 (344)
T KOG4532|consen 98 LFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---------------------AVHN 156 (344)
T ss_pred eecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------------------eeec
Confidence 6665544444444444555444333222332235566788888888886554321 1132
Q ss_pred c--cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 407 I--SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 407 ~--~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
. .+.++++|+|++++++.+....|..|.++.................-.+..|+.... .|+++..||++.||| ..
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecc
Confidence 2 388999999999999999999999999986543322212333445567888998887 899999999999999 43
Q ss_pred Cc-eE----EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC--------eEEEEEEcCCC
Q 002264 484 GR-KL----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--------WCTTMLYSADG 550 (945)
Q Consensus 484 ~~-~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~~~~s~~~ 550 (945)
.. +. .+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++......+..... .|..-.|+.++
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 32 22 2224588999999999765556777777778899999998766554433322 25556666666
Q ss_pred CEEEEEe
Q 002264 551 SRLFSCG 557 (945)
Q Consensus 551 ~~l~~~~ 557 (945)
..+.+..
T Consensus 315 ~s~~v~~ 321 (344)
T KOG4532|consen 315 ESNDVKN 321 (344)
T ss_pred ccccccc
Confidence 5555543
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=1.5e-05 Score=87.97 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=112.2
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCC--CEE-----EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
.++.++.++.+.-+| .+|+.+.+...... ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 566677788888889 78887765542210 000 0000011123467788899999999999999888776654
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc----eEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
....+.... + ..++++. .++.++-+|..+|+.+-.+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 3 3455444 27889999999999887765431100 011111 1346777888999999999
Q ss_pred CCCeeEEEeecCCCC--CC---ccEEEEcC--CCCEEEEEECCCcEEEEECCCCc
Q 002264 615 DNVNILTSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~--~~---v~~v~~sp--~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
.+|+.+......... .. ...+..+| .+..++.++.+|.+..+|..++.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999876654322110 00 11111223 34566677778888888887773
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=4.7e-06 Score=83.58 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=147.0
Q ss_pred EEEEEcCC-CCEEEEEECCC-cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-----CCcEEEEECCCC
Q 002264 589 GVVQFDTT-QNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-----DNGFKILANAIG 661 (945)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-----dg~i~iw~~~~~ 661 (945)
..++.+|. ...++.+-.-| ...+||..+++....+.......---.-+||+||++|++.-. .|.|-|||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 45778884 44555555544 477899999999888765543222345789999999998744 478999999966
Q ss_pred ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccc
Q 002264 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (945)
.+.+..+..+-...+ .+.+.|||+.|+.+.++-...=+.... .+-....+-++...
T Consensus 88 ~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~-------------------kLNl~tM~psL~~l 143 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRA-------------------KLNLDTMQPSLVYL 143 (305)
T ss_pred cEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCce-------------------ecChhhcCCceEEE
Confidence 566666666555433 478999997776654432111000000 01111111222222
Q ss_pred ccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeee-ccccccCCCccc
Q 002264 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA-VPQHWLPSSGLL 820 (945)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 820 (945)
|..+ ........++. ..|...|..+++.++|..++..-..|.-. ...+.--..... .+.........
T Consensus 144 d~~s---G~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-------~~~PLva~~~~g~~~~~~~~p~~~- 211 (305)
T PF07433_consen 144 DARS---GALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPG-------DAPPLVALHRRGGALRLLPAPEEQ- 211 (305)
T ss_pred ecCC---CceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCC-------ccCCeEEEEcCCCcceeccCChHH-
Confidence 2221 11112222221 22667899999999988555544333210 000000000000 01111111100
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
... -...+-+|++++++.++++.+ .+.+.+||..+++.+.... -..+..++-.+ ++ ++++.+ .|.
T Consensus 212 ----~~~--l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~-~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 212 ----WRR--LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTD-DG-FLVSSG-QGQ 278 (305)
T ss_pred ----HHh--hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecC-Cc-eEEeCC-Ccc
Confidence 111 356788999999999998888 5789999999999887765 33466677766 55 555443 343
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-06 Score=89.13 Aligned_cols=289 Identities=15% Similarity=0.176 Sum_probs=188.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.-|.+.|+.+.-+... ++.+++.||.++.|.-..-.-+. + ..-+..|-..|.+++.|.+|.+
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhcccccee
Confidence 3578888888777553 69999999999999753311110 0 0225568899999999999999
Q ss_pred EEEEEC-CCcEEEEEccCCcccccceeeccccccEEEEEEecCCC-eeEEEEEeCCCcEEEEe--CCCce-EEEecCCCC
Q 002264 421 VGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE--LSGRK-LFNFEGHEA 495 (945)
Q Consensus 421 las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~~~l~s~s~d~~i~vwd--~~~~~-~~~~~~~~~ 495 (945)
++|++. |..++++|+.+-..+..+ .+..-.+.+ ++..++... ..+-++.-.++.+.++| ..+.. ...-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999875443211 121122222 122222211 11344455678999999 33323 334455899
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccC------CCeeEE---------ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVD---------YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+|..+.+.+.. ..+++....|.|..|..+. ...... +........++.|+|+|..+...+.
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-- 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-- 221 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--
Confidence 99999998865 5788888899999998762 111111 1122335789999999999998875
Q ss_pred CCCceEEEEeCCCCceeeEecc--------------------------------ccCcceEEEEEcCCCCEEEEEECCCc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~ 608 (945)
+..|++++.++|+.++.+.. +.......+.|...+++|+.|+-=|
T Consensus 222 --DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 222 --DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred --ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 88999999999887654431 1111233467888899998887654
Q ss_pred EEEEECCCCeeEEEeecCCCC-----------------------CCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 609 IKFWDMDNVNILTSTDAEGGL-----------------------PNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~-----------------------~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
|++.++.++.+.+.+...... +.-..+.+.+|..+++++-....+++|
T Consensus 299 ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 889999998877765322100 000122355566667777667777776
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=2.4e-05 Score=80.09 Aligned_cols=218 Identities=17% Similarity=0.153 Sum_probs=138.6
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEe-cCCCeeEEEEEeCCCcEEEEe-CCCceE
Q 002264 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (945)
Q Consensus 411 ~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~~~l~s~s~d~~i~vwd-~~~~~~ 487 (945)
+++|.+ ++.++++-...+.|..|+..++.... +. . .....+++. +++. ++.+..+ .+.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~-~-~~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----ID-L-PGPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EE-S-SSEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Ee-c-CCCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578998 67777777678999999998865321 21 1 127778888 6654 4545544 455669 666433
Q ss_pred EEecC-----CCCCEEEEEeeecCCccEEEEEEcC--------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 488 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
..... .....+.+++.+ +|++.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 22221 334577888866 56666665543 456666655 33333322334578999999999887
Q ss_pred EEeecCCCCceEEEEeCCCCce----eeEeccccC--cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTI----KRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
++.. ..+.|..+++..... .+.+..... .....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 477899998853221 222221111 136779999999888888889999999987 888888887733
Q ss_pred CCCccEEEE-cCCCCEEEEEE
Q 002264 629 LPNLPRLRF-SKEGNLLAVTT 648 (945)
Q Consensus 629 ~~~v~~v~~-sp~g~~l~~~~ 648 (945)
.+++++| .++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 7899999 46766666544
No 303
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.4e-07 Score=90.23 Aligned_cols=121 Identities=13% Similarity=0.209 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCC--------CCHHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (945)
+.-+.|+|..||..+||.+||..|-++|.+. .++..+++++++|+...|+.-.+.=. ....+....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk-~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHK-VELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHhccchhhhHH
Confidence 4557899999999999999999999999976 12678999999999998887764421 00001123378999
Q ss_pred HHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccc
Q 002264 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRE 126 (945)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (945)
+.|.|+||++.+++.+|+.+.++++.|....+.++++....++.++...+
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999998889999999999999876543
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=8e-05 Score=76.24 Aligned_cols=221 Identities=15% Similarity=0.117 Sum_probs=142.5
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc-CCCCEEEEEEC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVAFT 426 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s-~~g~~las~~~ 426 (945)
.+++|.+....|+++.-..+.|..|+..+++... +... ....+++. +++.+++ +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------~~~~--~~~G~~~~~~~g~l~v-~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------IDLP--GPNGMAFDRPDGRLYV-ADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------EESS--SEEEEEEECTTSEEEE-EET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------EecC--CCceEEEEccCCEEEE-EEc
Confidence 3678898444578887778999999998876431 1111 26777887 6655544 445
Q ss_pred CCcEEEEEccCCcccccceeec--c-ccccEEEEEEecCCCeeEEEEEeCC--------CcEEEEeCCCceEEEecCCCC
Q 002264 427 KHLIQLYSYAGSNDLRQHSQID--A-HVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWELSGRKLFNFEGHEA 495 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~--~-h~~~v~~l~~s~~~~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~ 495 (945)
.+ +.++|..+++... +.... . .....+++++.++|. +.++.... |.|..++..++.. .+...-.
T Consensus 60 ~~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~~ 134 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPDGKVT-VVADGLG 134 (246)
T ss_dssp TC-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETTSEEE-EEEEEES
T ss_pred Cc-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCCCeEE-EEecCcc
Confidence 44 5666988875432 22221 2 445789999999999 66665533 4577777445543 3333455
Q ss_pred CEEEEEeeecCCccEE-EEEEcCCeEEEEEccCCCe-----eEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 496 PVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS-----RVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-----~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
..+.++|+++ ++.| ++-+..+.|..++++.... ........ ...-.+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 6789999874 4555 5667788999999875433 11122222 34788999999987776553 78999
Q ss_pred EEeCCCCceeeEeccccCcceEEEEE-cCCCCEEEEEE
Q 002264 568 EWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVG 604 (945)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 604 (945)
++|.. |+.+..+..... .+++++| .++.+.|++.+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99987 888888776644 6888888 46666666554
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=0.00017 Score=68.57 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=91.6
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~ 588 (945)
.+++.|+..+.+..-|..++.......... .+.+-+.- -|++++.+.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 567777778888877877777666543332 23222221 4667777775 88999999999988877765443 22
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
......+++..+++|+.|+..+..|..+..++...+..+. ...+-+..|-...|..+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 3355778899999999999999999999888887665543 334445566223344444444443
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=9.6e-06 Score=88.80 Aligned_cols=338 Identities=13% Similarity=0.112 Sum_probs=185.7
Q ss_pred EEEEEEcCCCCEEEEEEC----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 409 VSRVAWSPDGNYVGVAFT----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
-+-.+|+|...++|+++. .|.|.||- ++|++-+.. +..-| +++++|+|..- .|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cccee---hhhhccChHHH--HHhhccccceeEEEecCC
Confidence 344689999999998864 57898884 666643321 23333 66799999877 788888899999999 44
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--C--CC--eEEEEEEcCCCCEE----
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P--GH--WCTTMLYSADGSRL---- 553 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~~--~i~~~~~s~~~~~l---- 553 (945)
.+.-.....|..+|..+.|++ +|..++++..-|.|.+|.++..+.+..... | +. ...+...++++.-+
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444444557999999999987 568999999999999998875444332221 1 11 23344555654322
Q ss_pred --EEEeecCCCCceEE-EEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 554 --FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 554 --~~~~~~~d~~~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
++.+. +..+- .++.+.....+.. .-.-.|+|..++.++.+|+|+-.|- .|...........
T Consensus 169 KaaVtgD----e~alD~~fnwk~~~a~rs~---------~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGD----ESALDEPFNWKESLAERSD---------EKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCc----hhhhcccccCccchhhccc---------cccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 22221 11111 1211110000000 0112477889999999999988774 4555555443321
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEEC-CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILAN-AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (945)
..+-|.+...-+.+.-.+-++.++-+ .+|.... +..+..+.. .+++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee--------------~~~vk~sgk--------~Ggr--------- 279 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE--------------RCAVKVSGK--------LGGR--------- 279 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCchHH--------------hhhhhhccc--------cCCc---------
Confidence 33445554444444444433333322 2221000 000111000 0000
Q ss_pred CCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEE
Q 002264 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (945)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~ 789 (945)
.| .++++...|-++ -. .. .. ......+.+++++..+..+..+...|.+.
T Consensus 280 ---------------qG-giA~sEssGvLr---~~-----eK---yg----~e~ge~~~c~cY~~~~~~l~agt~~gnv~ 328 (1416)
T KOG3617|consen 280 ---------------QG-GIACSESSGVLR---KS-----EK---YG----LELGEGILCMCYGEKEIRLWAGTKEGNVT 328 (1416)
T ss_pred ---------------cC-cccccccccccc---CC-----cc---hh----hhcCCceEEEEEeccceEEEecccCCcEE
Confidence 00 022222222111 00 00 00 11456799999999999999999999999
Q ss_pred EEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC
Q 002264 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (945)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s 850 (945)
+|.-.... .....++..|...+... ..+.|+.+.|+|-...+++-+
T Consensus 329 ~w~~v~~~------f~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 329 IWLDVNKG------FQGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EeeecCcc------ccCCCCcceEEecCchh---------hccceEEEEeccccchhhhhh
Confidence 99532211 11112344455443221 346789999998666665554
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=9.4e-07 Score=83.36 Aligned_cols=209 Identities=13% Similarity=0.181 Sum_probs=124.4
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|+.+.|+.+- .|+++..++.+.......+.+... |+=..... +...+..|.++-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecC
Confidence 37777777664 588888888887777655544321 11111111 1122334444444444455678899999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-CCCc-eEEEecCCCCCEE
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGR-KLFNFEGHEAPVY 498 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~-~~~~~~~~~~~v~ 498 (945)
.||.+.+.+.+.- ++....+..-...-.+.+....++ .+.+++ .-+..+.|+ ...+ .+.... ....|.
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~ 183 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVT 183 (319)
T ss_pred CCceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeeccccccccccccc-ccccch
Confidence 9999999987652 221111111111122333344454 333322 112234444 1111 111111 223488
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
+++-+|... +.+++|+.||.+.+||.+...... .+..|...+..+-|+| ++..|++++. +|.+..||..+
T Consensus 184 ~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 999888754 788999999999999998874443 4566788999999999 5678888885 99999999765
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.4e-07 Score=64.39 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=37.3
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
|+++.++.+|.+.|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=1.6e-05 Score=81.23 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=137.6
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeec
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~ 505 (945)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+.++.. ...+..... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 6889999998887765332 21111222222 333455 567778899999999 79998877764 222111111 1
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCC---CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.+..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|+++|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2346777778899999999999988874 3221 11122223333777777764 7899999999999988776
Q ss_pred cccCcc---------eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 582 ~~~~~~---------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
...... ...-.+..++ .++.++.++.+..+|+.+++.+.... .. .+... ...++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~~-~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYSL-PSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECEC-EECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccCC-ceeeCCEEEEEeCCCE
Confidence 643211 1122222234 78888888864445999999665333 21 22221 3457788888889999
Q ss_pred EEEEECCCCcc
Q 002264 653 FKILANAIGLR 663 (945)
Q Consensus 653 i~iw~~~~~~~ 663 (945)
|..||+.+++.
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999999843
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.54 E-value=1.5e-05 Score=87.54 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=71.3
Q ss_pred CCceeEEeecCCCceEEecC--CCeEEEEeccCceE------------EEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV------------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~------------~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
......+++||||+++++++ ++++.|.|+.+.+. ..+..- .......+|.+ +|+...+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 46678899999999999888 68899999987552 333332 23356788999 8888888899999
Q ss_pred EEEEeccc----------ceEEEEecCCCccee-----EEEecCCcceeeee
Q 002264 897 IHIYNVRV----------DEVKSKLKGHQKRIT-----GLAFSTSLNILVSS 933 (945)
Q Consensus 897 v~vwd~~~----------~~~~~~l~~h~~~V~-----~l~~s~dg~~l~s~ 933 (945)
|..|++.+ ...+..+.-|-.+-. +=.-.|||+||++.
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 99999986 234444543332211 11235788888875
No 311
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=1.5e-06 Score=87.50 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=110.9
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEecCCCee-EEEEEeCCCcEEEEeCCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLL-CVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~-~l~s~s~d~~i~vwd~~~~ 485 (945)
.+..+..++++++||++..+....++++..... .+..... .-...-+++.|..+.... .....+....+.+|.....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556778888888888887777777665433 2211111 122334455555554421 2223344556666662213
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+....-||-+.++.++|++ |+++|+++..|..|++-.+...-.+..+. +|...|..++.-++ ..|++++ ||+
T Consensus 143 ~~~~~lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s----GD~ 215 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS----GDK 215 (390)
T ss_pred CcchhhhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC----CCC
Confidence 3445568999999999987 55899999999999998776655555444 48888999988665 4477776 499
Q ss_pred eEEEEeCCCCceeeEec
Q 002264 565 FLVEWNESEGTIKRTYA 581 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~ 581 (945)
++++||+.+|+.+.++.
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999999887665
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.3e-07 Score=90.97 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=123.0
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d 427 (945)
+.++||-+-.-.-++.+.+..|-+-|+.+|-... +. .++.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3446764322112344457888999998875431 22 56789999999999999999999
Q ss_pred CcEEEEEccCCccc--ccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCce---EEEecCCCCCEEEE
Q 002264 428 HLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSI 500 (945)
Q Consensus 428 g~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~---~~~~~~~~~~v~~~ 500 (945)
|.|..+|+..+..- ... .--.|.+.|+++.... +++ +|++.+.+|.|++|| ..-++ +..+.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999865211 111 1224899999998877 566 889999999999999 54455 88999997766656
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
-++-.+....+++++.|...++|.++.+....++..+.
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55556666789999999999999999888777665543
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7.8e-06 Score=82.22 Aligned_cols=248 Identities=12% Similarity=0.126 Sum_probs=145.3
Q ss_pred cccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.+.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|... +++.|-..|.|.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78889999999999999876555 45556 78999999998876 8889999999999
Q ss_pred Ee-C-CCceEEEecC--CCCCEEEEEeeecC----CccEEEEEEcCCeEEEEEccCCCee--EEecC-CCCeEEEEEEcC
Q 002264 480 WE-L-SGRKLFNFEG--HEAPVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSR--VDYDA-PGHWCTTMLYSA 548 (945)
Q Consensus 480 wd-~-~~~~~~~~~~--~~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~i~~~~~s~ 548 (945)
|| . ....+..+.+ ...+|..++..+.+ -|.+++....+ ...|.+...... ..... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 3 3333333332 23344444322110 12333333322 344654332221 11222 234566677777
Q ss_pred CCCEEEEEeecCCCCceEE----EEeCCCCceeeEec-cc---cCcc---eEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 002264 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~----iwd~~~~~~~~~~~-~~---~~~~---~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (945)
..+.++.....+.+-..++ --|-.+|.++-.-+ ++ .... -..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665543211111111 11222332221111 11 0000 111222344455555 44678899999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcC-C-CCEEEEEECCCcEEEEECC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSK-E-GNLLAVTTADNGFKILANA 659 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp-~-g~~l~~~~~dg~i~iw~~~ 659 (945)
++.++.+... .+|.+++... + +.+|++-.+ ..++|+..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheec-ceEEEEecC
Confidence 9999998775 3677776654 2 446666654 488888654
No 314
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.52 E-value=3.9e-07 Score=84.22 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 002264 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (945)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (945)
...++++|++|+++.|++.+....+.-... ...+.|.|++|+|+|||..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467899999999999999998763221111 1348999999999999999999999999999998775446678888999
Q ss_pred hhcccCccc--hhhhcccCCchHHHHHHHHHHHhhccCCccccccccCCCCC-chHHHHHHHHHHHH
Q 002264 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNW 181 (945)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~ 181 (945)
+|...+... ...+..+- ....|+.+.+.+.+.+-...- +| .+.|..++.+....
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 888876654 22222221 337789999998887655332 44 45688888776544
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=3.5e-05 Score=88.59 Aligned_cols=277 Identities=12% Similarity=0.163 Sum_probs=157.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 58999999999986 6777889999999887765432 23346789999999999999999
Q ss_pred ECCCcEEEEEccCCcccccceeecc---ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC-CceEEEecCCCCCEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~-~~~~~~~~~~~~~v~~ 499 (945)
+..+++.+-.- +-..+... .+.. ..+....+-|-....+ +-|+ .|....-+ .. .+.+.....+ +.=++
T Consensus 128 T~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~ 200 (1265)
T KOG1920|consen 128 TGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTS 200 (1265)
T ss_pred eCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCce
Confidence 88887766542 21222110 1100 0111222333222111 1111 11111111 00 0000000111 12234
Q ss_pred EEeeecCCccEEEEE-----EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-
Q 002264 500 ICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE- 573 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~- 573 (945)
|+| .+||+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ ++.|.++.-..
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGL 276 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCc
Confidence 565 5688888873 233789999865 3322222223334568999999999988775433 55788887432
Q ss_pred --CceeeEeccccCcceEEEEEcCCCCEEEE---EECCCcEEEEECCCCee--EEEeecCCCCCCccEEEEcCC-CCEEE
Q 002264 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKE-GNLLA 645 (945)
Q Consensus 574 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~-g~~l~ 645 (945)
|+....+..... .+..++|+.++..|++ ......|++|-..+... .+.+..... .-+.|+|. ...+.
T Consensus 277 ~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred cccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 222222222222 3788999999999888 44555599999887653 333433322 22888883 23344
Q ss_pred EEECCCcEEEEEC
Q 002264 646 VTTADNGFKILAN 658 (945)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (945)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446666655554
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=4.1e-07 Score=89.17 Aligned_cols=164 Identities=12% Similarity=0.141 Sum_probs=121.0
Q ss_pred EEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC----Cee
Q 002264 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSR 531 (945)
Q Consensus 456 ~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~ 531 (945)
.++|+-+-.-.. ++.+.+..|-+-|..+...+.|. ..+.|.++.|... +.+++.|+.+|.|..+|++.. ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCcc
Confidence 346764433213 45566777888884333344444 5677888888764 369999999999999999876 333
Q ss_pred EEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCce---eeEeccccCcce-EEEEEcCCCCEEEEEECC
Q 002264 532 VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSN-GVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 532 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d 606 (945)
...-.|+..|+++..-. ++.+|++.+. +|.|.+||.+.-+. ++.+.||-+... .-+.+.+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 34456777888888777 7778887765 99999999987666 889999866332 224466777889999999
Q ss_pred CcEEEEECCCCeeEEEeecCC
Q 002264 607 SQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~ 627 (945)
...+||.+++|.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999887654
No 317
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.46 E-value=0.0064 Score=69.24 Aligned_cols=554 Identities=13% Similarity=0.078 Sum_probs=259.3
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~- 417 (945)
..++...-..|+.+-++| +|++||.-|.=.+-.+.+...... ...+ ...+. .-++|..+..-.+
T Consensus 301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs-y~~i-----------let~~-NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS-YVVI-----------LETFV-NLGPIVDMCVVDLD 365 (1096)
T ss_pred EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc-hhhh-----------hhhcc-cccceeeEEEEecc
Confidence 344555566777777787 688898877656666544332210 0000 00011 2247777766542
Q ss_pred ---CCEEEEEE---CCCcEEEEEccCCcccccceeeccccccEEEEE--EecCCCeeEEEEEeCCCcEEEEeCCCce-EE
Q 002264 418 ---GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRK-LF 488 (945)
Q Consensus 418 ---g~~las~~---~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~~~l~s~s~d~~i~vwd~~~~~-~~ 488 (945)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+- -+.-++...+++. ..
T Consensus 366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf-~~eTrvl~i~~e~ee~ 442 (1096)
T KOG1897|consen 366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSF-ISETRVLNISEEVEET 442 (1096)
T ss_pred ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEe-ccceEEEEEccceEEe
Confidence 23555554 488999986433221111113444 44577777 4443332 333332 2333444533331 11
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
...+.......+..+.- +++.|+=.. ...||+++-. .....+..+.. ++....+.+...++.++. ++.+..
T Consensus 443 ~~~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y 513 (1096)
T KOG1897|consen 443 EDPGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFY 513 (1096)
T ss_pred ccccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEE
Confidence 22233333444444332 223332222 3456666533 23333334443 333334445556666552 567777
Q ss_pred EeCCCCceeeEeccccCcceEEEEEcCCC------CEEEEEECCCcEEE-EECCCCeeEEEe--ecCCCCCCccEEEEcC
Q 002264 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIKF-WDMDNVNILTST--DAEGGLPNLPRLRFSK 639 (945)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~dg~i~i-wd~~~~~~~~~~--~~~~~~~~v~~v~~sp 639 (945)
.++..+.............+.|+.++|-| ..+++|..+..+.+ .-..+...+... ....-...|.-.++-.
T Consensus 514 ~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 514 LEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG 593 (1096)
T ss_pred EEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec
Confidence 77776664433333333468888888742 25666765444433 333444333322 2222223455556666
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCC-----CCCc
Q 002264 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR-----PSPI 714 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~-----~~~~ 714 (945)
|..+|.++..||.+.-+.+....-.+...+..... ..|+.--.|+..++.-+.+.++....+....... ....
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG--t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke 671 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG--TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE 671 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEccccccccC--CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH
Confidence 78999999999998766554331111111100000 0111112222222211111111111110000000 0000
Q ss_pred ccCCCCCccCCC-CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEee
Q 002264 715 INGVDPTSRSMD-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (945)
Q Consensus 715 ~~~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~ 793 (945)
........++.. ..++++.. +.+++..++... .....++| -......+++.+....+.+.+.......=
T Consensus 672 v~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iq---kl~irtvp----l~~~prrI~~q~~sl~~~v~s~r~e~~~~-- 741 (1096)
T KOG1897|consen 672 VNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQ---KLHIRTVP----LGESPRRICYQESSLTFGVLSNRIESSAE-- 741 (1096)
T ss_pred hhhhcccccccCCceEEEecC-CceEEEEecchh---hcceeeec----CCCChhheEecccceEEEEEecccccchh--
Confidence 111111112221 22333332 555555554322 11111222 22344566666644444444332211100
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccc-cccCCCcCCceeEEeecCC-CceEEecC-----------CCeEEEEecc
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKN-DSYVMSAT-----------GGKISLFNMM 860 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~~l~~s~d-g~~la~~s-----------d~~i~iwd~~ 860 (945)
.-+.......+.++|.++-+.+.. .+...+....+.++.|..| ++++++|. .|.|.||...
T Consensus 742 ------~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 742 ------YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred ------hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 001111222345566665553331 1211111223444557777 78888772 2678888887
Q ss_pred CceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCce
Q 002264 861 TFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (945)
Q Consensus 861 ~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~ 938 (945)
.++.+..... -.+.+.++..- +|++||.- ...|++|+..+.+.++.-..|..++..+...-.|..++.|.-=+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 7433333322 23456665544 57777644 567999999988777766678888888888888888887765554
Q ss_pred EEE
Q 002264 939 VTL 941 (945)
Q Consensus 939 i~v 941 (945)
+.+
T Consensus 892 itl 894 (1096)
T KOG1897|consen 892 ITL 894 (1096)
T ss_pred EEE
Confidence 433
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.45 E-value=7.2e-05 Score=76.34 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~ 445 (945)
+|+|..||..+|+.+-+ .. +..-.....+. ..+++..+++++.++.+..||..+|+.+-...
T Consensus 2 ~g~l~~~d~~tG~~~W~-------~~----------~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-------YD----------LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEE-------EE----------CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEE-------EE----------CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 68899999988887632 11 11101122211 23357777778899999999999997654332
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cCCCC---CEEEEEeeecCCccEEEEEEcCCeE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEA---PVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
+.+. +...... ++. .++.++.++.+..+| .+|+.+... ..... ......... .+..++.+..++.|
T Consensus 64 -~~~~---~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPGP---ISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSGKL 134 (238)
T ss_dssp -CSSC---GGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCSEE
T ss_pred -cccc---ccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceE--ecCEEEEEeccCcE
Confidence 2111 1111222 344 455566788999999 999998874 32211 111122222 24678888889999
Q ss_pred EEEEccCCCeeEEecCCCCe----------EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEE
Q 002264 521 KAWLYDTMGSRVDYDAPGHW----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 590 (945)
..+|+++++.+......... +..-....++ .++.+.. ++.+..+|..+++.+-... . . ....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~-~-~-~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP-I-S-GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC-S-S--ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec-C-C-CccC
Confidence 99999999998877664321 1122222344 5555543 5544444999998664222 1 1 2222
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCeeEEE
Q 002264 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
.....+..+++++.++.|..||+.+|+.+..
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1456778888888999999999999987653
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.44 E-value=0.00015 Score=78.36 Aligned_cols=296 Identities=16% Similarity=0.171 Sum_probs=154.1
Q ss_pred eCCCCeEEEEE--------eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 353 sp~g~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
||||+++|+.- +..+.+.|||+.+++... +......+....|||+|+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999766632 234688999998876542 11125678889999999999988
Q ss_pred ECCCcEEEEEccCCcccccceeecc-------c---------cccEEEEEEecCCCeeEEEEEe-CCCcEEEEeCCCceE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKL 487 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd~~~~~~ 487 (945)
. ++.|.+++..++...+. +..+ - -+.-..+-|||||+. |+... .+..|..+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 57899999877744322 1112 0 112356889999994 44433 233333332 0
Q ss_pred EEecCCCC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-Ee----cCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 488 FNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DY----DAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 488 ~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~----~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
........ .+..+.+ |...... . .-.+.++|+.+++... .. ......+..+.|.++++.++..-.+
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCccccCCccccccc-CCCCCcC-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 11111111 2333333 2221111 1 1135667887766532 21 2345578999999999955544433
Q ss_pred CC-CCceEEEEeCCCCceeeEeccccCcc---eEEEEEc-CCCCEEEE-EECCCc--EEEEECCCCeeEEEeecCCCCCC
Q 002264 560 KD-GDSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFD-TTQNHFLA-VGEDSQ--IKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 560 ~d-~~~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
++ +...+.+.|..++............. .....+. +++..++. ...+|. |++++..++... .+... .-.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--DWE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--SS-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--cee
Confidence 32 34456778887776544443322222 2234444 66655554 446665 555666666644 33322 224
Q ss_pred cc-EEEEcCCCCEEEEEEC-C--C--cEEEEECC-CCccccccccCCccccccCcceeeeecccccceec
Q 002264 632 LP-RLRFSKEGNLLAVTTA-D--N--GFKILANA-IGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 632 v~-~v~~sp~g~~l~~~~~-d--g--~i~iw~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
|. -+.|+++++.|...+. + + .+..-++. .+ ..+.+...... -..+.|+|+|++++.
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~~~-----~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCEDGD-----HYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTSST-----TEEEEE-TTSSEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCCCC-----ceEEEECCCCCEEEE
Confidence 54 4778888776654433 2 2 34444555 22 22222221111 147899999998864
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.44 E-value=0.00038 Score=70.98 Aligned_cols=137 Identities=9% Similarity=0.087 Sum_probs=89.2
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee------cCCCCceEEEEeCCCCceeeEeccccC------
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~d~~~~i~iwd~~~~~~~~~~~~~~~------ 585 (945)
+++.++|.++++..-.+... ....+..+||++.++++.. .++..-.|.+||..+-.+...+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 36788887776654443322 2334678999999887543 122345799999999877765443321
Q ss_pred cceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 586 KSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.......++.+++++++.. --..|.|.|+..++.+..+..++. ..+-=+ ...-+.+.|.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPS-GNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEE-ETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEec-CCCceEEEecCCceEEEEECCC
Confidence 1123368889999988855 456799999999999998887642 222112 2245778889999998888743
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=0.0011 Score=63.20 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=91.0
Q ss_pred EeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 002264 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (945)
Q Consensus 352 fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~ 431 (945)
.-+|.+.+++.||..+.+.--|..+|+..-+ . ++ ...|.+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We-------~----------il---g~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A----------IL---GVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee-------h----------hh---CceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3445566789999999999999999886532 1 11 1233332222 478899999999999
Q ss_pred EEEccCCcccccceeeccccccEE-EEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCcc
Q 002264 432 LYSYAGSNDLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
+.+.++|+.+..+..+. .|. .....+++. ++..|+.|++.+..| .+..++.+.+-..+...+-++.+. + .
T Consensus 77 fl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 99999997665332221 121 233456777 899999999999999 777787776543333333333332 2 2
Q ss_pred EEEEEEcCCeEEEE
Q 002264 510 FIFSTAIDGKIKAW 523 (945)
Q Consensus 510 ~l~s~~~dg~i~iw 523 (945)
.|+.+...|.+.--
T Consensus 149 sly~a~t~G~vlav 162 (354)
T KOG4649|consen 149 SLYAAITAGAVLAV 162 (354)
T ss_pred eEEEEeccceEEEE
Confidence 34455555555433
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=7.4e-07 Score=60.76 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=37.0
Q ss_pred ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=7.8e-06 Score=89.46 Aligned_cols=334 Identities=11% Similarity=0.071 Sum_probs=179.2
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
+-.+|+|...++++++.+....|.+.||- .+|++.+.....- .+.+++|+|..-.|+.|-+-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 44579999999999988877888898884 5666554433221 25669999988888888899999999987766555
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccc-cccccCCccccccCcceeeeecccccceec----cC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS-LRAVENPPFEALRTPIESVALKVSASSAVS----SG 696 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~----~~ 696 (945)
....| ..+|..+.||++|..++++..-|.+.+|...-..+. ...+-.|..... -...+..+++++.-++- +.
T Consensus 96 v~~th--~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~-ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 96 VVETH--PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ-LTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred eccCC--CCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhce-eeEEEEecCCChHHhhhhhhhhc
Confidence 44433 458999999999999999999999999988632111 011111111100 01233444555432211 11
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
.++...++..-.-++...-....-.-.++|..++.++.+|+|+-.|-.. ....+.--+ + -..+-|.+-.
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-----~~~~V~k~d-----S-~vQmLf~~~~ 241 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-----RQRTVHKLD-----S-EVQMLFMGYC 241 (1416)
T ss_pred cCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC-----cEEEEEEcc-----c-hHHHHHhccc
Confidence 2222222211111111111112223456677777777778877666331 111111000 0 0122333333
Q ss_pred CeEEEeeecCeEEEEeecCCCC-------CCCCceee-eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEe
Q 002264 777 VGLLALGSNGVQKLWKWHRNEQ-------NPSGKATA-SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (945)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~ 848 (945)
..++..-.+-++.++-+..... ...|+.-. ...+. ..-..|.+....--|......++|+|++.-+..++.
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA-~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIA-CSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccc-cccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 3344444443444443322110 00000000 00000 001112211111122224577999999999999998
Q ss_pred cC-CCeEEEEecc-C------ceEEEEecC---CCCCeeEEEeecCCCceEEEeecC
Q 002264 849 AT-GGKISLFNMM-T------FKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTED 894 (945)
Q Consensus 849 ~s-d~~i~iwd~~-~------~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~d 894 (945)
|. .|.+.+|--. + +.-..++.+ -.+.|+.+.|.| -...+++-+..
T Consensus 321 gt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~~~ 376 (1416)
T KOG3617|consen 321 GTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP-IKSTAAVNTEE 376 (1416)
T ss_pred cccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-ccchhhhhhhh
Confidence 88 6899999522 2 133444443 345699999999 66666555443
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.39 E-value=0.00029 Score=76.19 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=153.6
Q ss_pred cCCCCEEEEEeec-----CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 547 SADGSRLFSCGTS-----KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 547 s~~~~~l~~~~~~-----~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
|||+++++..... .+..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788887774320 11255789999999876655444 23577789999999998886 5789999988875443
Q ss_pred EeecCCC----------------CCCccEEEEcCCCCEEEEEECC-CcEEEEECCCCccccccccCCccccccCcceeee
Q 002264 622 STDAEGG----------------LPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (945)
Q Consensus 622 ~~~~~~~----------------~~~v~~v~~sp~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 684 (945)
.. ..+. ...-..+.|||||++||....| ..|..+.+........ ..+ .+..+.
T Consensus 78 lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp------~~~~~~ 147 (353)
T PF00930_consen 78 LT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYP------EVESIR 147 (353)
T ss_dssp SE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-------EEEEEE
T ss_pred ec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCC------cccccc
Confidence 22 2220 1223678999999999877554 4444443321100000 000 001111
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC--CCcccccceeecCCcceeeecC-CCC
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD--KPKPWQLAEIVDSGQCRLVTMP-EST 761 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~-~~~ 761 (945)
+-. .|...- .+.++++.+ +....+..+ ...
T Consensus 148 YPk-------------------------------------------~G~~np~v~l~v~~~~~----~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 148 YPK-------------------------------------------AGDPNPRVSLFVVDLAS----GKTTELDPPNSLN 180 (353)
T ss_dssp --B-------------------------------------------TTS---EEEEEEEESSS----TCCCEE---HHHH
T ss_pred cCC-------------------------------------------CCCcCCceEEEEEECCC----CcEEEeeeccccC
Confidence 100 011111 122333322 111111111 001
Q ss_pred CCccceEEEEEecCCCeEEEeeec---CeEEEEeecCCCCCCCCceeeeeccccccCCCccc---ccccccCCCcCCcee
Q 002264 762 DTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL---MANDVAGVNLEEAVP 835 (945)
Q Consensus 762 ~~~~~v~~l~~s~dg~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~i~ 835 (945)
.....+..+.|+++++.++..-.+ ....+.-+ |..++.. ....-.+ --..-.
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~e~~~~--Wv~~~~ 238 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLEETSDG--WVDVYD 238 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEEEESSS--SSSSSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEEecCCc--ceeeec
Confidence 145567899999999955444332 33333322 2222111 0000000 111122
Q ss_pred EEeec-CCCceEEecC--CCe--EEEEeccCceEEEEecCCCCCeeE-EEeecCCCceEEEeecCc----eEEEEecccc
Q 002264 836 CIALS-KNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGTEDS----TIHIYNVRVD 905 (945)
Q Consensus 836 ~l~~s-~dg~~la~~s--d~~--i~iwd~~~~~~~~~~~~h~~~i~~-l~~s~~~~~~lasg~~dg----~v~vwd~~~~ 905 (945)
...|. +++..++..+ +|- |.+++..++.. ..+....-.|+. +.+++.++.+.+++..++ .|+.-++.++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 44554 6666555554 553 77778776664 455544555755 778884455666666543 5666666634
Q ss_pred eEEEEecCCCcceeEEEecCCcceeeee
Q 002264 906 EVKSKLKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
..+..|....+.-..+.|||||++++-.
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 4556666444434689999999988754
No 325
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.39 E-value=4.5e-06 Score=78.90 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=102.5
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.|.++-.+-+.+-.+.. +++|..||.+.+.+.+.-..+.. ++-..|.+. .+.+....++.+
T Consensus 87 ~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~-----------------~i~~~~~~~-as~~~~~~~~~i 147 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMS-----------------RIPSIHSGS-ASRKICRHGNSI 147 (319)
T ss_pred ccCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhh-----------------hcccccccc-cccceeecccEE
Confidence 35544444444545554 89999999999999766222110 001112111 122222345555
Q ss_pred EEEEC-----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCC
Q 002264 422 GVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (945)
Q Consensus 422 as~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~ 494 (945)
.++.- -+..+.|+++-.+.+.. -..-...|.+++-.|..+. ++++|+.||.+-+|| ... .+...+..|+
T Consensus 148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~~~~~~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk 223 (319)
T KOG4714|consen 148 LSGGCGNWNAQDNFYANTLDPIKTLIP---SKKALDAVTALCSHPAQQH-LVCCGTDDGIVGLWDARNVAMPVSLLKAHK 223 (319)
T ss_pred ecCCcceEeeccceeeecccccccccc---cccccccchhhhCCccccc-EEEEecCCCeEEEEEcccccchHHHHHHhh
Confidence 44321 23456666654332221 1112234999999998776 788999999999999 444 3456678899
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+++.+-|+|+ ++..|+++++||.+--||..+
T Consensus 224 ~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 AEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 99999999998 567899999999999998654
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.2e-06 Score=86.05 Aligned_cols=211 Identities=10% Similarity=0.134 Sum_probs=144.6
Q ss_pred cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCeEEEE
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAW 523 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw 523 (945)
-|...|+.+.-+.. + ++.+++.||.++.|..+. +.+..+..|-..|.+++.+. ++.++.+.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEE
Confidence 38888888776653 4 899999999999999333 23455677888888888765 6678888777 9999999
Q ss_pred EccCCCeeEEe--cCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCE
Q 002264 524 LYDTMGSRVDY--DAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 524 d~~~~~~~~~~--~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945)
|+.+.....-+ ....+.+..+ .++ |-..+++.+. -.++.+.++|-.... ....+.+.+..++..+.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 98875544222 2222222222 122 2222333322 247889999976543 444455555558999999999999
Q ss_pred EEEEECCCcEEEEECCC------CeeEEEe-------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 600 FLAVGEDSQIKFWDMDN------VNILTST-------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~~------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
+++....|.|.-|.... .+....+ ..........++.|+|+|..+.+-+.|..|++++..++ .+.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 1111111 11122345689999999999999999999999999988 4444
Q ss_pred cc
Q 002264 667 AV 668 (945)
Q Consensus 667 ~~ 668 (945)
.+
T Consensus 238 ei 239 (558)
T KOG0882|consen 238 EI 239 (558)
T ss_pred hh
Confidence 33
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=9.6e-05 Score=80.31 Aligned_cols=283 Identities=13% Similarity=0.081 Sum_probs=160.9
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|...|.--+++..+++ ++.|+.-|.+++|+-..++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4557777777888886 89999999999999777665431 1233456777888999999999
Q ss_pred EEECCCcEEEEEccCCccccccee--e-ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc-----eEEEecCCC
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQ--I-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~--~-~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~ 494 (945)
.|+..|.|.++-+..+........ . ..|...|++++|++++. .+++|...|.|.+-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877543222111 1 13778999999999999 8999999999987763331 122333345
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-CC-eEEEEEEcCC----CCEEEEEeecCCCCceEEE
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GH-WCTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-~i~~~~~s~~----~~~l~~~~~~~d~~~~i~i 568 (945)
+.|..+... ++.+|++... .. .+++.+.......-... .+ .-...+|-|. .+-.+.++ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666543 2233433332 22 23443322211100001 11 0122333332 23333443 334677
Q ss_pred EeCC-CCceeeEeccc-------------cC---cc-------eEEEEE----cCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 569 WNES-EGTIKRTYAGF-------------RK---KS-------NGVVQF----DTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 569 wd~~-~~~~~~~~~~~-------------~~---~~-------~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
|... .|+.+++..-. .. .. -..+.+ .-.+..+++-++-| |+|+|.++...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8765 24433332210 00 00 000111 11122445555444 889998876655
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
.-.... ..|..|+. +|+-|++-..|+.+++..+.+..
T Consensus 320 l~se~~---~DI~dVs~--~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 320 LWSEGG---HDILDVSH--CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred EeecCC---CceeEEee--cCceEEEEecCCceeEEEeehhH
Confidence 544322 14555544 56677777778888888776653
No 328
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.33 E-value=0.011 Score=67.30 Aligned_cols=296 Identities=13% Similarity=0.105 Sum_probs=155.8
Q ss_pred CCCcEEEEEEeCC--CCe---EEEEEeCcCcEEEEEc-CCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 343 QGSTVISMDFHPS--HQT---LLLVGSSNGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 343 h~~~V~~v~fsp~--g~~---llasgs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
-+.+|.|+.++|- ++. ++|+|..+..+.+--. .+...+....+. ...-...|.-..|-.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~---------------~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS---------------GEIIPRSILLTTFEG 593 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC---------------CCccchheeeEEeec
Confidence 3578999999985 444 8999987766555432 333322210000 111234566666766
Q ss_pred CCCEEEEEECCCcEEEEEcc--CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 494 (945)
|..+|.++..||.+.-+.++ +|..-... ...-...++.=-.|+..+.. .+++++ |+-..+|..+++.+.+--.-.
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t-~vfa~s-drP~viY~~n~kLv~spls~k 670 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTLGTQPISLRTFSSKSRT-AVFALS-DRPTVIYSSNGKLVYSPLSLK 670 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEcccc-ccccCCCCcEEEEEeeCCce-EEEEeC-CCCEEEEecCCcEEEeccchH
Confidence 78999999999998766554 44321111 11123456666777777664 455444 777777776666654322111
Q ss_pred CCEEEEE-eeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecC----------CC
Q 002264 495 APVYSIC-PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSK----------DG 562 (945)
Q Consensus 495 ~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~----------d~ 562 (945)
.+..+| |+.+.-...++++ ..+.+++.-++.-+...... .-......+++.+....+.+.+... ..
T Consensus 671 -ev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~ 748 (1096)
T KOG1897|consen 671 -EVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYE 748 (1096)
T ss_pred -HhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcce
Confidence 122222 2211112234443 34566666655443332111 1223455666766444444333210 01
Q ss_pred CceEEEEeCCCCceeeEeccccCcc---eEEEEEcCC-CCEEEEEE----------CCCcEEEEECCCCeeEEEeecCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFDTT-QNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
-..++++|..+.+.....+...... +.++.|..| +.++++|. ..|.|.+|.+..+..+.....+.-
T Consensus 749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV 828 (1096)
T ss_pred EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence 1246778877776655443332222 333457776 56777765 257888888877444433332222
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.+.++..- +|+++|.- ...|++|+..+.
T Consensus 829 ~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~ 858 (1096)
T KOG1897|consen 829 KGAVYALVEF-NGKLLAGI--NQSVRLYEWTTE 858 (1096)
T ss_pred ccceeehhhh-CCeEEEec--CcEEEEEEcccc
Confidence 2234443322 57777654 457889888765
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00013 Score=84.11 Aligned_cols=243 Identities=10% Similarity=0.072 Sum_probs=142.9
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....|.++.|-.++..++.+..+|.|.+-|.++.... ....-...|.+++||||++ .++-.+.++++.+-+.+-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEeccc
Confidence 3468999999999999999999999999988775422 2334567899999999999 566666567776544322
Q ss_pred ceEEEecC-----CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 485 RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 485 ~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.++..-.- ..+..-.+-|.... .=+-|+ .|.....+................=++++|--||.++++....
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 22211110 11111222221110 011111 1111111110000000000111223578999999999885543
Q ss_pred CCCC-ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE---CCCcEEEEECCC---CeeEEEeecCCCCCCc
Q 002264 560 KDGD-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN---VNILTSTDAEGGLPNL 632 (945)
Q Consensus 560 ~d~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v 632 (945)
...+ ..|++||.. |.+-..-... ...-.+++|-|.|..+++.. .|+.|.+|..+. |+....+ +....+|
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~--p~de~~v 292 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF--PLDEKEV 292 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC--cccccch
Confidence 3223 789999976 4433222221 22456789999999998854 567899998654 2222222 2223358
Q ss_pred cEEEEcCCCCEEEE---EECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAV---TTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~---~~~dg~i~iw~~~~~ 661 (945)
..++|+.++..||+ ......|++|-..+-
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCe
Confidence 99999999999998 444455999988664
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=2.1e-05 Score=86.41 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=127.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.++|++++- + +++-|+.+|.|++.+....- .. ...|+.. .-+|.++++
T Consensus 39 ~D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~~--~~-------------------~~~~s~~------~~~Gey~as 88 (846)
T KOG2066|consen 39 NDAISCCAVHD--K-FFALGTHRGAVYLTTCQGNP--KT-------------------NFDHSSS------ILEGEYVAS 88 (846)
T ss_pred hhHHHHHHhhc--c-eeeeccccceEEEEecCCcc--cc-------------------ccccccc------ccCCceEEE
Confidence 45788888874 3 69999999999999975432 10 1224333 568999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecC-----CCeeEEEEEeCCCcEEEEe---CCCceEEEecCCCC
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLLCVVTCGDDKLIKVWE---LSGRKLFNFEGHEA 495 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~~~l~s~s~d~~i~vwd---~~~~~~~~~~~~~~ 495 (945)
|+.||+|.|-.+.+++... ++ ....++.+++++|+ .+ .+++||.-| +.++. ...+....+....+
T Consensus 89 CS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred ecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 9999999999998876554 22 35668999999998 34 689999888 77776 22222234666788
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC------eEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------WCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+|.+++|. |.+++-++.+ -|++||..+.+.+..+..+.. .-..+.|.++.+.++.-+ .+|++.
T Consensus 162 ~I~~i~W~----g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~------d~v~i~ 230 (846)
T KOG2066|consen 162 PIHSIKWR----GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG------DSVKIC 230 (846)
T ss_pred ceEEEEec----CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC------CeEEEE
Confidence 99999984 3566665554 479999988777665554433 234577877776666543 357777
Q ss_pred eCC
Q 002264 570 NES 572 (945)
Q Consensus 570 d~~ 572 (945)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 766
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00015 Score=80.54 Aligned_cols=204 Identities=12% Similarity=0.130 Sum_probs=132.0
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCcc-EEEEEEcCCCCEEEEEECCCc
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~s~~g~~las~~~dg~ 429 (945)
+|++.+. .+|.|+.+|.|.+.+- +-... +-+..+... |..+-.-.+..+|++.+.|+.
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~--s~~~~------------------~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNS--SFQLI------------------RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecc--cceee------------------ehheecchhhhhHhhcccCceEEEEEeecCC
Confidence 3567776 5999999999887763 22110 113345445 333333334467888777654
Q ss_pred -----EEEEEccCCcc---cccc---eee----ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe---C--CCceEEE
Q 002264 430 -----IQLYSYAGSND---LRQH---SQI----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---L--SGRKLFN 489 (945)
Q Consensus 430 -----i~vwd~~~~~~---~~~~---~~~----~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd---~--~~~~~~~ 489 (945)
++||+++.-+. .... ..+ .....++.+++.+.+-+ .+|.|-.+|.|..+. . .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 89999874321 1111 111 12356789999999977 889999999998885 1 2222222
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
......+|+.+++... +..++....-..|.+|.+....+ ...+..++....|.++++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~d--~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSD--GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEecC--CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 3334678999998654 44434444456789999885552 334677788899999988777677765 668999
Q ss_pred EeCCCCceeeEec-ccc
Q 002264 569 WNESEGTIKRTYA-GFR 584 (945)
Q Consensus 569 wd~~~~~~~~~~~-~~~ 584 (945)
||.....+...|. ++.
T Consensus 240 Y~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EcCCCcceeeeecCCCe
Confidence 9998777777776 544
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.28 E-value=0.00055 Score=69.83 Aligned_cols=268 Identities=15% Similarity=0.185 Sum_probs=157.7
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcc
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF----------TKHLIQLYSYA 436 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~----------~dg~i~vwd~~ 436 (945)
+.|.|+|.++++.+-. + ..+-.-.+..|||++.+.+++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGm-------------------i--~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM-------------------I--DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEE-------------------E--EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEE-------------------e--ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 4789999888776531 1 112333467899999988753 23459999998
Q ss_pred CCcccccceeeccccc----cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE
Q 002264 437 GSNDLRQHSQIDAHVG----AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI 511 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~----~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 511 (945)
+-.....+..-.+|.. ....++++.||+.+++.-.+.-.+|.|-| ..++.+..+... + +.. ..|.++ ..+
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~--iyP~~~-~~F 150 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWL--IYPSGN-RGF 150 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEE--EEEEET-TEE
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEE--EEecCC-Cce
Confidence 8654432211111111 23346888999976666667777888999 556655555421 1 222 235544 458
Q ss_pred EEEEcCCeEEEEEccCCCeeEE-----ecCCCCe-EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee--eEeccc
Q 002264 512 FSTAIDGKIKAWLYDTMGSRVD-----YDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK--RTYAGF 583 (945)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~--~~~~~~ 583 (945)
.+.|.||++....++....... +.....+ +..-.+...+..++..+. +|.|+-.|+...... ..+...
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEESS
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCccccc
Confidence 8999999999998885443321 1111222 223344444544444444 788888887655422 222110
Q ss_pred ---------cCcceEEEEEcCCCCEEEEEE---CCC-------cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC-E
Q 002264 584 ---------RKKSNGVVQFDTTQNHFLAVG---EDS-------QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-L 643 (945)
Q Consensus 584 ---------~~~~~~~~~~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~ 643 (945)
..+....+++++..+.|++.- .+| .|.++|+.+++.+..+.... ++.+++.+.+.+ .
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPL 303 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-E
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcE
Confidence 011233478887777766632 222 38889999999999998743 578999999766 5
Q ss_pred EEEEE-CCCcEEEEECCCCccccccc
Q 002264 644 LAVTT-ADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 644 l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (945)
|++.+ .++.+.+||..++ +.++..
T Consensus 304 L~~~~~~~~~l~v~D~~tG-k~~~~~ 328 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATG-KLVRSI 328 (342)
T ss_dssp EEEEETTTTEEEEEETTT---EEEEE
T ss_pred EEEEcCCCCeEEEEeCcCC-cEEeeh
Confidence 54444 4789999999998 444443
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00023 Score=79.11 Aligned_cols=200 Identities=16% Similarity=0.215 Sum_probs=127.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEe-C---C
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-L---S 483 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd-~---~ 483 (945)
+|++.+..+|.|+.+|.|.+++-. - +....+..+...+...-|.-+++. +|++.+.|+ .+++|+ . .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~--~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--F--QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--c--eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 467889999999999988887632 1 221245566666444445555544 777777665 489999 2 1
Q ss_pred Cc---eE--EEecC-----CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC---CCeeEEe-cCCCCeEEEEEEcCC
Q 002264 484 GR---KL--FNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDY-DAPGHWCTTMLYSAD 549 (945)
Q Consensus 484 ~~---~~--~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~-~~~~~~i~~~~~s~~ 549 (945)
+. ++ ..+.. ...++.+++++.+ -..++.|-.+|.|.++.-+- ......+ .....+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 22 22 12222 2456788888764 47899999999999884321 1122222 233458999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
++.++.+.. ...|.+|.+....+......+++....|..+++....+++++. ..+++|+.....+...+.
T Consensus 183 ~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 988332222 5678999988544344433444557888888887665666654 469999988666555554
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.1e-05 Score=74.83 Aligned_cols=247 Identities=13% Similarity=0.135 Sum_probs=136.7
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
....|..-|..++|||...-|+..++.+.+|.|.|+.+...+.. +..| ..+.+++|.-|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDE 247 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCC
Confidence 34458899999999999877889999999999999998766532 3345 789999999875
Q ss_pred C-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEe------cCCCeeEEEEEeCCCcEEEEeCC---CceEE
Q 002264 419 N-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------YPNKLLCVVTCGDDKLIKVWELS---GRKLF 488 (945)
Q Consensus 419 ~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~~~~~~~l~s~s~d~~i~vwd~~---~~~~~ 488 (945)
. +|..|..+|.|.|||+...+.......-.-...+|..++.- +.|. +++..+. .+..|+.. +....
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~ 323 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPC 323 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCc
Confidence 4 66777789999999998655432211111123345444433 2333 3443332 24456611 11111
Q ss_pred Eec-CCCCCEEEEEeeecCCccEEEEEEcCC------eEEE-EEccCCCeeEEe-cCC-CC------eEEEEEEcCCCCE
Q 002264 489 NFE-GHEAPVYSICPHHKENIQFIFSTAIDG------KIKA-WLYDTMGSRVDY-DAP-GH------WCTTMLYSADGSR 552 (945)
Q Consensus 489 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~~~~~ 552 (945)
.+. +..+...++..++..+ ..|++.-.+. .+-. -|-..+..+... ..+ +. .-..+.-.++.++
T Consensus 324 vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 324 VLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred ccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 111 1233444444444322 3343332210 0000 011111111100 000 10 1112223456666
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE-cCCCCEEEEEECCCcEEEEECC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
++..+. ..+.+.+||..+++.++++.... ++..++. .-+++-++..=.|..++||..+
T Consensus 403 iv~~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 403 IVVVGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEEecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 666553 47789999999999999887652 4555443 3344444444456678887654
No 335
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.20 E-value=2.6e-06 Score=51.18 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhh
Q 002264 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (945)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (945)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00041 Score=76.61 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=152.8
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCccccccc------ccccccccCcccccccc-cC--CCccEEEEEEc-----CCCCEE
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIF-KD--VPISVSRVAWS-----PDGNYV 421 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~--h~~~V~~i~~s-----~~g~~l 421 (945)
.-|.+.||+..|.|+|+-+.+++.+..-++ .-|-....++....... .+ ..+......+| .||+||
T Consensus 65 eyy~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~ 144 (635)
T PRK02888 65 EYYGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYL 144 (635)
T ss_pred cEEEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEE
Confidence 336678899999999999999888754221 22322222111110000 00 01112222333 278888
Q ss_pred EEEEC-CCcEEEEEccCCcccccce--ee-ccc---------cccEEE-----EEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 422 GVAFT-KHLIQLYSYAGSNDLRQHS--QI-DAH---------VGAVND-----LAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 422 as~~~-dg~i~vwd~~~~~~~~~~~--~~-~~h---------~~~v~~-----l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
..-.. +..|-..+++.-++-+.+. .. ..| ++.|.+ +-++|||+. +..+.-..+.+.+.| .
T Consensus 145 findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~e 223 (635)
T PRK02888 145 FINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAE 223 (635)
T ss_pred EEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECc
Confidence 87654 4445555554332211100 00 012 222221 224556652 222333345666667 5
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
+.+...++.--. ....+.+++ +|.++++.+.+ +++..-+.........+.... + -.+.++|++....
T Consensus 224 tmeV~~qV~Vdg-npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~-- 294 (635)
T PRK02888 224 TMEVAWQVMVDG-NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG-- 294 (635)
T ss_pred cceEEEEEEeCC-CcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC--
Confidence 444444433211 223445544 55677666522 122222221111111111110 0 1234578877653
Q ss_pred cCCCCceEEEEeCCC-----CceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee------------E
Q 002264 559 SKDGDSFLVEWNESE-----GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI------------L 620 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~ 620 (945)
++.|.+.|.++ .+.+..+.... ....+.++|||+++++++ .++++.|.|+.+.+. +
T Consensus 295 ----gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 295 ----GSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred ----CCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 56799999988 45555555433 467799999999998877 689999999987552 3
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
...... . .-...+|.++|....+..-|..|..|++.+
T Consensus 369 aevevG--l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELG--L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccC--C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333331 1 235788999999888888899999999975
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0016 Score=73.68 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=69.6
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC------eE--EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------WC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i--~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
..++.++.++.+...|..+++....+..... .+ ..+.+. ++..++.++. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4577778889999999988888776654332 00 011111 2245655553 889999999999988776
Q ss_pred ccccCc-----ceEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCeeEEEeec
Q 002264 581 AGFRKK-----SNGVVQFDTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 581 ~~~~~~-----~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 625 (945)
...... ......+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 543220 01111222 24555554 367899999999998887755
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.16 E-value=4.7e-05 Score=84.63 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
.++-|+....+..+| .+++..+...-..+.|.-++. +++++.+|...|+|.+-|.++.+.+.++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 567788788888899 555555544444445666653 558999999999999999999999999999999887654
Q ss_pred EcCCCCEEEEEeecCC-----CCceEEEEeCCCCceeeEeccccCcceEEEEEcCC-CCEEEEEECCCcEEEEECCC-Ce
Q 002264 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-VN 618 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~ 618 (945)
-.|+.|++||.+.. -|..|.+||++..+.+..+.-+.+ ...+.|.|. ...+++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 56889999987432 256789999998877766655544 234677775 36788888999999998332 11
Q ss_pred e-EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 619 ~-~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+ ......+...+.+..+.++++|..+|.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1 222222222335899999999999999999999999984
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.13 E-value=0.0029 Score=66.01 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=108.6
Q ss_pred EEEcCCCCEEEEEEC-CC--cEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 412 VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 412 i~~s~~g~~las~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
=+|.+||+.|+.++. || .+.+.|+.+++..+ |..+. .......++++++ .++-......|+--| .+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889977666554 44 57777888876554 33322 2222466778887 444444456788888 55554
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEc----------------------CCeEEEEEccCCCeeEEecCCCCeEEEE
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAI----------------------DGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 544 (945)
...+......+-...|..+.++..++..-. ...|..-|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 444454555555566665656665543321 1234455666655544443 44577889
Q ss_pred EEcCCCCEEEEEeecCCCC---ceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEE-----CCCcEEEEECC
Q 002264 545 LYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVG-----EDSQIKFWDMD 615 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~---~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~ 615 (945)
.|+|....++.-+..+.-+ ..|.+.+.. +...+.+..+. ...+.-=.|.|+|..+..-+ .+..|.-+|..
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 9999665555443322222 234444433 33333333222 22344456899998776643 24457778888
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
+++.......+ ....+..++||++++-=+.|
T Consensus 273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 88765444332 34566778899988755544
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.10 E-value=0.0077 Score=62.92 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=133.7
Q ss_pred EEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccEEEEEEcCCCCEEEEEECC
Q 002264 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~g~~las~~~d 427 (945)
+|.+||+.||+++..|| .+.+-|+.+++... +..+. .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888887777 45555777776542 22221 112246677888888776666
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEe--cCCCeeEEEEEe----------------------CCCcEEEEe-C
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCG----------------------DDKLIKVWE-L 482 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~~~l~s~s----------------------~d~~i~vwd-~ 482 (945)
..++-.|+++.+... .+......+-...|. .|+. .++-.- ....|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 788888998876432 333445555455664 3444 332211 011222334 3
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEc---CC-eEEEEEccCCCeeEE-ec--CCCCeEEEEEEcCCCCEEEE
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DG-KIKAWLYDTMGSRVD-YD--APGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg-~i~iwd~~~~~~~~~-~~--~~~~~i~~~~~s~~~~~l~~ 555 (945)
+|+. ..+..-...+..+.|+|.. ...|+.|-+ +. .-|||-+++...... +. .....+..=-|.|||..+..
T Consensus 177 tG~~-~~v~~~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGER-KVVFEDTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--E-EEEEEESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCce-eEEEecCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 3333 3333344556677788763 345555432 22 136787665433221 11 12335666679999998876
Q ss_pred Eee-cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC----------------CcEEEEECCCCe
Q 002264 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~-~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (945)
.+. .+..+..|.-+|+.+++........ ...-.-.+++|++++-=|.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 554 2233557888888887654433221 22335567888877653332 246778888776
Q ss_pred eEEEeecC-------C-CCCCccEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 002264 619 ILTSTDAE-------G-GLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (945)
Q Consensus 619 ~~~~~~~~-------~-~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~ 658 (945)
........ + ....=..+.|+|||++++..++ .|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 54322211 0 0001246899999998876665 566666544
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=7.5e-05 Score=82.23 Aligned_cols=185 Identities=16% Similarity=0.105 Sum_probs=126.8
Q ss_pred cccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe
Q 002264 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (945)
Q Consensus 451 ~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 530 (945)
...++|++++ ++ .|+-|+.+|.|++.+..|.. .+...|+.. +.+|.++++|+.||+|.|-.+-+...
T Consensus 39 ~D~is~~av~--~~--~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DK--FFALGTHRGAVYLTTCQGNP-KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cc--eeeeccccceEEEEecCCcc-ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4457777776 44 78999999999999977766 444445443 34789999999999999998888777
Q ss_pred eEEecCCCCeEEEEEEcCC-----CCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 531 RVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
...+..+ .++.+++++|+ .+.++++|. .| +.++.-+-. ...........+.|.++.|. |++++-++
T Consensus 106 ~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~----ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 106 ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGM----AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ceeEecC-CcceeEEeccchhhhhhhheeecCc----ce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 6665544 46899999998 567888874 44 777653321 11111112223478888886 56666666
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCC----CCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGL----PNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.+| |++||+.+++.+..++.+... .--..+.|.++. .|+.|-.| +|+|..++
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 555 899999999988877655421 012457777654 55666555 89998887
No 342
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.04 E-value=3.4e-06 Score=63.47 Aligned_cols=52 Identities=37% Similarity=0.544 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCH
Q 002264 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (945)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~ 90 (945)
+..++++|+.|+|+.|++.+.......... ...+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~-~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLER-NSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhcc-CCCchhHHHHHHHHHHHHcCCc
Confidence 678999999999999999998874332222 2359999999999999998764
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.0028 Score=68.37 Aligned_cols=95 Identities=18% Similarity=0.363 Sum_probs=72.5
Q ss_pred cCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEE
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~ 908 (945)
....+.+++++|+.+.++.|. ||.|.+||...+....+ ...-.++.++|+| +|.++++|+..|.+.+||+.-+...
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 577899999999999999998 99999999876543322 2345589999999 9999999999999999998744221
Q ss_pred EE----------------ecCCCcceeEEEecCCc
Q 002264 909 SK----------------LKGHQKRITGLAFSTSL 927 (945)
Q Consensus 909 ~~----------------l~~h~~~V~~l~~s~dg 927 (945)
.+ .-.+......+.|++..
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 11 12345567778888543
No 344
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.03 E-value=8.2e-06 Score=53.44 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhhCCC
Q 002264 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (945)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (945)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
No 345
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.03 E-value=0.0001 Score=82.13 Aligned_cols=181 Identities=8% Similarity=0.080 Sum_probs=127.2
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
++..++.|+....+..+|+.+.+..+ ...-..+.|+-|+. +++ ++.+|...|+|.+-| .+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45667778887888999998876554 22223334555554 456 889999999999999 88899999999999
Q ss_pred CEEEEEeeecCCccEEEEEEc---------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC-CEEEEEeecCCCCce
Q 002264 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~ 565 (945)
.|..+.+ .|+.|+++|. |.-|++||++....+..+..+.++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998875 4468888875 445789999887666554444432 345566642 34555553 677
Q ss_pred EEEEeC---CCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 566 LVEWNE---SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 566 i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
..+-|. .+...-.......+..+..+.++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888883 332211122222232488899999999999999999999997
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.99 E-value=0.0078 Score=67.11 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=134.5
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.+...++||||++++++-+..| .+++.|+.+|+.+.. .+.. .....+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------------------~i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------------------GIEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------------------EEEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------------------cccc--cccceEEEeCCCCEE
Confidence 4457889999997665545444 699999999976531 0111 112239999999987
Q ss_pred EEEECCC-----------cEEEEEccCCcccccceeecccccc--EEEEEEecCCCeeEEEEEeCCC---cEEEEe-CCC
Q 002264 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSG 484 (945)
Q Consensus 422 as~~~dg-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~~~~l~s~s~d~---~i~vwd-~~~ 484 (945)
+....+. .|+.|++.++..-. ...+...... ...+..++|++. ++++..... .+.+.+ ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEecccc
Confidence 7665433 37777776653321 1133333332 678899999996 333333333 466777 332
Q ss_pred ----ceEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCe---eEEecCCCC--eEEEEEEcCCCCE
Q 002264 485 ----RKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGH--WCTTMLYSADGSR 552 (945)
Q Consensus 485 ----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~s~~~~~ 552 (945)
.....+......+....-+. ++.+++... ..+.|...++..... ...+..+.. .+..+. ..+++
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 23444443333343332222 223444332 335677777777653 223334433 344444 44556
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE--E--CCCcEEEEECCCCeeEE
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--G--EDSQIKFWDMDNVNILT 621 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~--~dg~i~iwd~~~~~~~~ 621 (945)
|+.... .++...|+++++..+.............+..+...++++.+... + .-+.++.||+.+++...
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 665543 34577899999984444444444333345555555555554432 2 34578888988887543
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.98 E-value=0.0015 Score=71.47 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=120.2
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.........++++|+|++++++ .||.-.|+..... +. ...+.-...+|.+.++ +++-...++|.++.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33345567899999999999995 5677788873221 21 1334566788998554 66666688999976
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.++.....+.. ...+..+- + |.+|...+ ++.|.+||+.++..+..+... .|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~-~~~~~~If--~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIF--G---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcC-CcccceEE--c---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 54443233332 12344442 1 45666555 448999999999888887755 388999999999999887
Q ss_pred CCCceEEEEeCCCC-----------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 561 DGDSFLVEWNESEG-----------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 561 d~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
+..+++++.... .....+... ...|.+.+|..+ .++..+.. .|+. +-.|+.-......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--- 232 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---
Confidence 556777765433 011122111 125667777755 45444444 6665 3344432222221
Q ss_pred CCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.++.=+.+.+..+.+.....|+.+..+.+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1567778888778888888999998888754
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.96 E-value=0.048 Score=62.01 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=67.0
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEE----------EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.+.-+|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 4667777788888888888888876654321 111 1122 1234555543 789999999999988
Q ss_pred eEeccccCcceEEEEEcC--CCCEEEEEEC------CCcEEEEECCCCeeEEEeec
Q 002264 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVGE------DSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (945)
-.+.......-..+.-+| .+..++++.. +|.|+.+|.++|+.+-.+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 765432110000011111 1335555542 68999999999998877644
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.94 E-value=3.3e-06 Score=89.86 Aligned_cols=205 Identities=13% Similarity=0.195 Sum_probs=132.9
Q ss_pred CCcEEEEEEeCCCC-eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEE
Q 002264 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (945)
Q Consensus 344 ~~~V~~v~fsp~g~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~l 421 (945)
...+.|++++.+.+ -++++|..+|.|.+-.+....-- -.....+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44788888776544 58999999999999887543211 0123567888999999999 67778
Q ss_pred EEEE----CCCcEEEEEccCCccc-ccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCC
Q 002264 422 GVAF----TKHLIQLYSYAGSNDL-RQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (945)
Q Consensus 422 as~~----~dg~i~vwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 495 (945)
|.|- .|..+.|||+.++-.. +....+.+ -.....+++|..+.+ .+.+|...+.+.++|....+...-.-.+.
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnTk 196 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNTK 196 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhhh
Confidence 8773 3567999999886211 11112222 344566889998777 78889888899999943333222222344
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEE-ccCCCeeEEecCCC-----CeEEEEEEcCCCCE-EEEEeecCCCCceEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAPG-----HWCTTMLYSADGSR-LFSCGTSKDGDSFLVE 568 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~i 568 (945)
.+..+.+.|-. +.++++-. ||.|.+|| ....+.......+. ..+..++|+|...- +++... ..+.|++
T Consensus 197 ~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 56666666632 34665544 99999999 44333332222221 25889999996543 444443 3778999
Q ss_pred EeCC
Q 002264 569 WNES 572 (945)
Q Consensus 569 wd~~ 572 (945)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9975
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0036 Score=67.56 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=135.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccc----------------------------------------cceee
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR----------------------------------------QHSQI 447 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~----------------------------------------~~~~~ 447 (945)
.|+++.|+++..-|++|...|.|.||.+...+... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999764321110 11123
Q ss_pred ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc-eEEE--ecC------CCCCEEEEEee---ecCCc---cEEE
Q 002264 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-KLFN--FEG------HEAPVYSICPH---HKENI---QFIF 512 (945)
Q Consensus 448 ~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~-~~~~--~~~------~~~~v~~~~~~---~~~~~---~~l~ 512 (945)
....++|++++.|.-| +++.|..+|.+.|.|..|- .+.. +.. ....++++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3446889999998666 7999999999999996554 3333 222 23457778775 23333 5788
Q ss_pred EEEcCCeEEEEEccC-CCeeE------EecCCCCeEEEEE-EcCC---------------------CCEEEEEeecCCCC
Q 002264 513 STAIDGKIKAWLYDT-MGSRV------DYDAPGHWCTTML-YSAD---------------------GSRLFSCGTSKDGD 563 (945)
Q Consensus 513 s~~~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~~~d~~ 563 (945)
+|...|.+.+|.+.- ....+ ....+...+..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 22111 1112334444443 3221 12455554 6
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEc-----CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC--CCCccEEE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-----TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLR 636 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 636 (945)
..++++...+.+...+.... ......+.+- ..+..|++-..+|.|++|.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 78999999887766555422 1122333442 3466788888999999999999988888776421 12356677
Q ss_pred EcCCCCEEEEEECCCcEEEEEC
Q 002264 637 FSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++++|..++..+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88888877766543 4444443
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0048 Score=66.60 Aligned_cols=251 Identities=14% Similarity=0.177 Sum_probs=130.9
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccc------cc------------cccccccccc------Cccccccc
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------SK------------PFKIWDMAAC------SLPFQASI 401 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~------~~~~~~~~ 401 (945)
.|+.+.|+++... |++|...|.|.||.+...+... .. +-++-|+..- ..-....+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8899999999999876543221 00 1112222210 01112234
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeecc------ccccEEEEEEec-----CC-CeeEEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~-----~~-~~~~l~ 469 (945)
+....++|++++.| |=-++|.|..+|.+.|.|+++...+.. ..+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999998 556999999999999999977654432 12222 345688898872 22 225788
Q ss_pred EEeCCCcEEEEe-C-C--CceE----EEecCCCCCEEEEEeeecCCc-------------------cEEEEEEcCCeEEE
Q 002264 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKENI-------------------QFIFSTAIDGKIKA 522 (945)
Q Consensus 470 s~s~d~~i~vwd-~-~--~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 522 (945)
.|...|.+.+|. . . +.-. .....+.++|..+..-....| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 999999999997 3 2 2211 122246677766653211111 12444556788999
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEc-----CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC---cceEEEEEc
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~ 594 (945)
+...+.+..............+.+- ..+..|++.. .+|.+++|.+..-+.+..+..... ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444222233344442 2444555555 389999999998887776654321 112334556
Q ss_pred CCCCEEEEE
Q 002264 595 TTQNHFLAV 603 (945)
Q Consensus 595 ~~~~~l~~~ 603 (945)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666544443
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.90 E-value=0.0054 Score=69.41 Aligned_cols=272 Identities=14% Similarity=0.123 Sum_probs=153.3
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE--EEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--RVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
+..++.++.|.-.|..+|+.+ |........ ..+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~-------W~~~~~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVL-------WRYDPKLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhh-------ceeCCCCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 566777899999999999876 322111000 00000010 01111 236777888899999999999
Q ss_pred Ccccccceeecccc---ccEE-EEEEecCCCeeEEEEEe---------CCCcEEEEe-CCCceEEEecCCCCC-------
Q 002264 438 SNDLRQHSQIDAHV---GAVN-DLAFAYPNKLLCVVTCG---------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (945)
Q Consensus 438 ~~~~~~~~~~~~h~---~~v~-~l~~s~~~~~~~l~s~s---------~d~~i~vwd-~~~~~~~~~~~~~~~------- 496 (945)
|+.+-... ...+. ..+. +..+. + . .++.++ .++.+..+| .+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98664221 11110 0011 11222 2 2 333443 467889999 889888766532110
Q ss_pred -------------EE-EEEeeecCCccEEEEEEcCC------------------eEEEEEccCCCeeEEecCCCCeEE--
Q 002264 497 -------------VY-SICPHHKENIQFIFSTAIDG------------------KIKAWLYDTMGSRVDYDAPGHWCT-- 542 (945)
Q Consensus 497 -------------v~-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~-- 542 (945)
+. +.++.+ .+..++.++.++ .|.-+|..+++....+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 10 112211 235677776555 788899999998887653221110
Q ss_pred ----EEEEc----CCCC---EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE--------
Q 002264 543 ----TMLYS----ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-------- 603 (945)
Q Consensus 543 ----~~~~s----~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 603 (945)
...+. -++. .+++++ .++.++.+|..+|+.+-...... ..++.+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 00111 1333 344444 37889999999999887654321 1123333 333332
Q ss_pred ----------ECCCcEEEEECCCCeeEEEeecCCCC------CCc--cEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 604 ----------GEDSQIKFWDMDNVNILTSTDAEGGL------PNL--PRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 604 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v--~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
..+|.+.-.|+.+|+.+-........ .+. ..++. .+..+++++.||.++.+|..+++..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence 24678999999999988777654110 011 11222 5678889999999999999999543
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.90 E-value=0.00011 Score=78.76 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=65.5
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+..+.....|.|++++|+... |+.|..||+|++||...+... +..+.-.++.++|+|+
T Consensus 253 vtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~---------------------~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTL---------------------LAKAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeee---------------------eeeecccceEEEEcCC
Confidence 344668999999999999995 899999999999998766432 1224456789999999
Q ss_pred CCEEEEEECCCcEEEEEccCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~ 438 (945)
|..+++|+..|.+.+||+.-+
T Consensus 311 gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998643
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.83 E-value=0.0031 Score=62.91 Aligned_cols=190 Identities=12% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
..++..++|.|+.+.|+|+....+.|...+. +|+.+... .+.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i-----------------~l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRI-----------------PLDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEE-----------------E-SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEE-----------------eCCC-CCCceeEEEECCCEEEEE
Confidence 4479999999998878888888899988886 46665321 1333 356888999888888777
Q ss_pred EECCCcEEEEEccCCcc-c--ccce--ee---ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC----CceEEEe-
Q 002264 424 AFTKHLIQLYSYAGSND-L--RQHS--QI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFNF- 490 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~-~--~~~~--~~---~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~----~~~~~~~- 490 (945)
.-.++.+.++++..... + .... .+ ..++..+-.++|.+.++ .|+.+-+..-..++... +..+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT--EEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC--EEEEEeCCCChhhEEEccccCccceeecc
Confidence 66689999998844321 1 1101 11 13556799999999988 44555556666666621 2222111
Q ss_pred -------cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------CeEEEEEEcCCCCEEE
Q 002264 491 -------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLF 554 (945)
Q Consensus 491 -------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~ 554 (945)
......+.+++++|. .+++++....+..|..+| ..++....+.... .+.-.|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 123345788899886 457888888889999998 5555555444433 2567899999997666
Q ss_pred EE
Q 002264 555 SC 556 (945)
Q Consensus 555 ~~ 556 (945)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0018 Score=70.66 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=117.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc---CcEEEEEcCCCCcccccccccccccccCccccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (945)
+|-.+........+..-...+..-+|+|+++.+....-.. ..+.++++.+++...... +
T Consensus 175 l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~- 236 (425)
T COG0823 175 LALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F- 236 (425)
T ss_pred EEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c-
Confidence 4444433222333333566888899999998644442222 359999999887543211 2
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-CCCc--EEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.-...+|||||+.||.+. .||. |.++|+.++...+ +..-.+.-+.-.|+|||+. ++++.+..|.-.||
T Consensus 237 --~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~ 309 (425)
T COG0823 237 --NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIY 309 (425)
T ss_pred --CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceE
Confidence 22334568999999887654 4555 6666777765322 3333333346789999997 34445556654555
Q ss_pred --eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-Ce--EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+..+.....+......-..-.|+| ||++++..+.. |. |.+.|+.++.....+ ..........+.++++.+..
T Consensus 310 ~~~~~g~~~~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EECCCCCceeEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEE
Confidence 466665555543333222444544 66777776643 44 566666555542222 22223345668888888877
Q ss_pred Eee
Q 002264 556 CGT 558 (945)
Q Consensus 556 ~~~ 558 (945)
.+.
T Consensus 387 ~s~ 389 (425)
T COG0823 387 SSG 389 (425)
T ss_pred ecc
Confidence 653
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.0042 Score=67.97 Aligned_cols=220 Identities=12% Similarity=0.143 Sum_probs=108.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..-.+..+.++|+|++ +++++ ||.-.|+.....+.. ..+.-...+|++.++ +|
T Consensus 31 ~~~~p~~ls~npngr~-v~V~g-~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n~-yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRF-VLVCG-DGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRNR-YA 83 (443)
T ss_dssp -SS--SEEEE-TTSSE-EEEEE-TTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSSE-EE
T ss_pred CCcCCeeEEECCCCCE-EEEEc-CCEEEEEEccCCccc------------------------ccCceeEEEEecCcc-EE
Confidence 5557899999999996 55544 788888884332211 124455688998555 66
Q ss_pred EEECCCcEEEE-EccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 423 VAFTKHLIQLY-SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~~~dg~i~vw-d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
+-...++|.++ +++. +..+.+ .+.. .+..+-. |. +|...+ ++.|.+|| .+++.+.++... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~-~~~k~i-~~~~---~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKN-EVVKSI-KLPF---SVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE--TT------SS----EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcc-ccceEE-cCCc---ccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEE
Confidence 66668889996 3332 222211 1111 2333322 76 555555 44899999 889988888743 38889
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCC----------CeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTM----------GSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
.|++ +|.+++..+.+ .+.+++.+.. +........ ...|.+.+|..+ .++..+ ..+++.+
T Consensus 151 ~Ws~--~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-----~~~lkYl 220 (443)
T PF04053_consen 151 IWSD--DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-----SNHLKYL 220 (443)
T ss_dssp EE-T--TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE------TTEEEEE
T ss_pred EEEC--CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-----CCeEEEE
Confidence 9876 55777777655 5666654432 001222222 456888888766 444443 3356553
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
--.....+..+. .++..+.+.+..+.++....|+.+..+.++.
T Consensus 221 ~~Ge~~~i~~ld----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 221 VNGETGIIAHLD----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ETTEEEEEEE-S----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcCCcceEEEcC----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 222112223322 2566667777667777777777777776643
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0022 Score=69.95 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=114.6
Q ss_pred CCccEEEEEEcCCCCEEEEEE---CC-CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAF---TK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~---~d-g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
-...+..-+|+|+++.++... .. ..+.++++++++..+.. . -.+.-..-+|+|||+. ++++...|+...+|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~---~~g~~~~P~fspDG~~-l~f~~~rdg~~~iy 265 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-N---FNGNNGAPAFSPDGSK-LAFSSSRDGSPDIY 265 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-c---cCCccCCccCCCCCCE-EEEEECCCCCccEE
Confidence 445677789999998876542 22 45999999988765422 2 3333456789999997 56667777765554
Q ss_pred --eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCCeEEE--EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKA--WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i--wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
|..++.+..+....+.-..=.|+| ||+.++..+ ..|.-.| ++.+.... ..+......-..-.|+|||++++.
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 566665655554333333334555 666666554 4555444 45544443 223333222237789999999998
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
.+.. ++.-.|.+.|+.++...+.+.... ....-.+.+++..++..+.
T Consensus 343 ~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred Eecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEecc
Confidence 8742 223457777777666444333221 2334567788877776553
No 358
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00036 Score=71.10 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC----------HHHHHHHHhccCHHHHHHHHcCCC-CCCCccchhhHHH
Q 002264 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFT-KVDDNRYSMKIFF 74 (945)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~ 74 (945)
+.+..+|..++...|..+.+..|-+|||...+ +..+-+++..|+-.-|++.+..-. .+.+ ....+-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHHH
Confidence 34689999999999999999999999998753 678999999999999998875531 1111 1234889
Q ss_pred HHHHHHHhHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 002264 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQ 117 (945)
Q Consensus 75 ~i~~~~~lell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (945)
.+..+.|++++..|... +|++..|+.++||...+...++.|-.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 99999999999999887 99999999999996655444554433
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.06 Score=53.88 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=110.0
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
.+.+-...+..++|.|+.+. ++++....+.|...+.+|+.+.++.-. .+..-.|++. +++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEE
Confidence 35555667999999998775 677777788887788888888776533 3456777764 3556766665689999998
Q ss_pred ccCCCee------E--EecC---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCce-eeEec-----cccC
Q 002264 525 YDTMGSR------V--DYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI-KRTYA-----GFRK 585 (945)
Q Consensus 525 ~~~~~~~------~--~~~~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~-~~~~~-----~~~~ 585 (945)
+...... . .+.. ....+-.++|++.++.|+++-. .....|+-++. ..... ..... ....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE--~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE--RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE--SSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC--CCChhhEEEccccCccceeecccccccccccee
Confidence 8432211 1 1111 2336889999999888887753 11223444443 11111 11111 1111
Q ss_pred cceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEEEeecCCC-------CCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 586 KSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
..+..++++|....++.- ..+..|..+| ..|+.+..+..... ...--.|+|.++|++.++ +.-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 246788999976665554 4777888899 67777777665442 124578999999865554 455555444
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.063 Score=58.97 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCC-CCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
.+++..+++||+|+++|.-. +|.+.|...+-.+....+... ......+.|+. ++..++ .- ...|.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l-~~-~~~l~lvg 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVL-SW-EDELLLVG 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEE-Ee-CCEEEEEC
Confidence 46899999999999999888 688988887666666666543 34678899987 443332 22 34566655
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.51 E-value=0.15 Score=58.14 Aligned_cols=285 Identities=11% Similarity=0.075 Sum_probs=151.0
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~ 439 (945)
++.++.++.|+-.|..+|+.+=+ ........... .......-..+++ .+..++.++.|+.+.-.|.++|+
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~-------~~~~~~~~~~~-~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWK-------YDPKLPDDVIP-VMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeE-------ecCCCCccccc-ccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 66667788899999999987632 21100000000 0000000001222 23466778889999999999998
Q ss_pred ccccceeecccc--ccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-CCCceEEEecCCCC----------------
Q 002264 440 DLRQHSQIDAHV--GAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHEA---------------- 495 (945)
Q Consensus 440 ~~~~~~~~~~h~--~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~~~~~~~~~~~---------------- 495 (945)
.+-... ...+. ..+++--..-++. +++..+ .+|.|..+| .+|+.+.++..-..
T Consensus 142 ~~W~~~-~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 142 VVWSKK-NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred EEeecc-cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 764322 11111 1122111111343 333222 368899999 88988766532211
Q ss_pred ---------------CEE-EEEeeecCCccEEEEEEcC-----C-----------eEEEEEccCCCeeEEecCCCC----
Q 002264 496 ---------------PVY-SICPHHKENIQFIFSTAID-----G-----------KIKAWLYDTMGSRVDYDAPGH---- 539 (945)
Q Consensus 496 ---------------~v~-~~~~~~~~~~~~l~s~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~---- 539 (945)
.+. .+++.+ ...+++.+..+ + .|.-.|+++++....+....+
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~--~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD 296 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDP--ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD 296 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcC--CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence 111 112222 23455554421 2 566778888888876655332
Q ss_pred -----eEEEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeE--------ec---c-ccC--------------
Q 002264 540 -----WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRT--------YA---G-FRK-------------- 585 (945)
Q Consensus 540 -----~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~--------~~---~-~~~-------------- 585 (945)
...-+.+..+|+ .++.+. ++|.+++.|..+|+++.. .. . ...
T Consensus 297 ~d~~~~p~l~d~~~~G~~~~~v~~~~----K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 297 YDGVNEMILFDLKKDGKPRKLLAHAD----RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEeC----CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 112223334666 344444 589999999999987521 10 0 000
Q ss_pred ---cc-----------eEEEEEcCCCCEEEEEECC---------------------------------CcEEEEECCCCe
Q 002264 586 ---KS-----------NGVVQFDTTQNHFLAVGED---------------------------------SQIKFWDMDNVN 618 (945)
Q Consensus 586 ---~~-----------~~~~~~~~~~~~l~~~~~d---------------------------------g~i~iwd~~~~~ 618 (945)
.. -...+++|+...+++...+ |.|.-+|+.+++
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 00 0125566666665553322 457778888888
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
..-..+.... ...+. ..-.+..++.++.+|.++.+|.++++.+.+
T Consensus 453 ~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~ 497 (527)
T TIGR03075 453 IVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWK 497 (527)
T ss_pred eeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence 7776654321 11222 122455777788899999999999955443
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.084 Score=55.03 Aligned_cols=229 Identities=12% Similarity=0.114 Sum_probs=128.5
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-----
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----- 489 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~----- 489 (945)
..++.|+.|+.+| +.++++........ . .+...|..+...++-+ .++.-+ |+.+.+++ ..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999998 99999833322221 1 1334499999999888 444444 59999999 32222110
Q ss_pred ---------ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-----CeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 490 ---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 490 ---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
-......+...+......+...+......+|.+|.+... .....+..+ ..+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 111223344444111223344455555668988887653 233344444 567888888 556666
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE--E
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--S 622 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 622 (945)
+. .....+.|+.++.....+..... .++..+... ++.+|++. |..-.+.|. .|+..+ .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 45688899997766554432211 123333333 34555443 223333344 343332 3
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (945)
+.... ...++++. ..+++..+. +.|.||++.++ ++.+.+...
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECC
Confidence 33332 34566663 457777665 46999999998 566655543
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.12 Score=56.81 Aligned_cols=168 Identities=11% Similarity=0.134 Sum_probs=90.0
Q ss_pred cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcC
Q 002264 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSA 548 (945)
Q Consensus 476 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~ 548 (945)
.|.+|+..|+.+.++.-..+.+.++.|... ..|+....||.+++||+.... ...+. .....+....+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 488888888888776554588999998653 467788899999999986333 22111 1111122223333
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCc-eeeEec---cccC-----cceE-EEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYA---GFRK-----KSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~---~~~~-----~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
+|-.+++. ++.+++..--... ..+.+. +... .... ...++.+....+....++.+++.+....+
T Consensus 138 ~GivvLt~------~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 138 NGIVVLTG------NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCEEEECC------CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 44333322 3444443322211 111111 1000 0000 02233444444444445555544332221
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
. +. ..+++..++.||+|+++|.-..+|.+.+....
T Consensus 212 ~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 212 Q---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred c---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 1 11 12378999999999999999999998887653
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.49 E-value=0.1 Score=58.20 Aligned_cols=245 Identities=11% Similarity=0.103 Sum_probs=126.5
Q ss_pred ccEEEEEEcCCCCEEEEE-ECCC----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-------
Q 002264 407 ISVSRVAWSPDGNYVGVA-FTKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------- 474 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~-~~dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------- 474 (945)
..+...++||||+++|.+ +..| .++++|+++|+.+.. .+.. .....+.|.++++. ++.+...+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~--~~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIEN--PKFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEE--EESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cccc--cccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999866 3334 499999999865532 1111 11223999999984 34443222
Q ss_pred ---CcEEEEe-CCCce--EEEecCCCCC--EEEEEeeecCCccEEEEEEcC----CeEEEEEccCC----CeeEEecC-C
Q 002264 475 ---KLIKVWE-LSGRK--LFNFEGHEAP--VYSICPHHKENIQFIFSTAID----GKIKAWLYDTM----GSRVDYDA-P 537 (945)
Q Consensus 475 ---~~i~vwd-~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~-~ 537 (945)
..|+.|. -++.. ...+...... ...+.. +.++++++..+.. ..+.+.++... .....+.. .
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 2366777 33321 3444444333 344554 4466776654433 23666676653 12222222 2
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce---eeEeccccCcceEEEEEcCCCCEEEEEE-CCC--cEEE
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDS--QIKF 611 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~i 611 (945)
......+... +..++..+..+...+.|...++..... ...+..+.. .+....+...+++|+... .++ .|++
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 2223333333 444444443344567888888887653 223333333 222233333455666544 333 5888
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
+++..+.....+..... +.|..+...+++..+..... -+++.-+|+.+++
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99984555555555432 24556665565554443322 2578888888774
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.47 E-value=4.1e-05 Score=81.90 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=121.1
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee--EEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
..+.|+++....+..+++.|..+|.|-+-..+..... .....+...+++++|++ |...|+++-...+.+..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666655555567888889999988876654332 23344556889999998 55666666544456788999999
Q ss_pred CCC--ceee--EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeeEEEeecCCCCCCccEEEEcC-CCCEEE
Q 002264 572 SEG--TIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (945)
Q Consensus 572 ~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~ 645 (945)
.++ .+.. .|.+.......+++|..+.+.+++|.....+.++|++ +......+.. ..+..+..+| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCcee
Confidence 876 2221 2222122235578888888899999999999999987 3222223322 1457788888 788888
Q ss_pred EEECCCcEEEEEC-CCCccccccccCCccccccCcceeeeeccccc
Q 002264 646 VTTADNGFKILAN-AIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 646 ~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
+-. ||.|.+||. ..-+..+......+.. ....+..+++.|...
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~-~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENK-KPKQLFALAYCPTRT 256 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCC-cccceeeEEeccCCc
Confidence 766 899999993 3332333333222221 112466777777643
No 366
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0089 Score=65.65 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=91.3
Q ss_pred eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+.+.....+.--+++..+++++.|+.-|.+++|+...+.....-. .+....+.....+++..++|.|+..|.|.++-+.
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 334333345556778889999999999999999988776554333 2233356778889999999999999999999887
Q ss_pred CCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
.+.........+-...+...|+++.|+++|..+++|...+....
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 75444444444444446678999999999999998877766654
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.17 Score=55.17 Aligned_cols=266 Identities=11% Similarity=0.118 Sum_probs=164.7
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE-EE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-s~ 424 (945)
....+.+.|+|..+.++-.....+..-+.. ...... ....-...-..++.++.+..+. +.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~------------------~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ------------------SLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee------------------eccCCCccccceeeCCCCCeEEEec
Confidence 677788888986555554333344444433 111100 0000113445788999888544 44
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
..+..|.+.|..+........ .+. ....++++++++.++++-.+ .++++.+.| .+++.+.....-..+ ..+++
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred CCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 456889999977655444221 122 56789999999864433333 478999999 777777765444444 77777
Q ss_pred eecCCccEEEE-EEcCCeEEEEEccCCCeeE-E---ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 503 HHKENIQFIFS-TAIDGKIKAWLYDTMGSRV-D---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 503 ~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.| +|..++. -..++.|.+.|........ . .......-..+.++++|.++.+.-.. +.++.+...|..++...
T Consensus 168 ~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 168 DP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVLKIDTATGNVT 244 (381)
T ss_pred CC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEEEEeCCCceEE
Confidence 66 5564444 4578999999966544432 1 11122234578899999987776531 11368999999888776
Q ss_pred eE-eccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCC-CCccEEEEcC
Q 002264 578 RT-YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSK 639 (945)
Q Consensus 578 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~sp 639 (945)
.. ...... ....+.++|+|..+++.. ..+.+.+-|..+............. ..+..+++.+
T Consensus 245 ~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 245 ATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 65 333332 345588999999999885 4588999999888877766543321 1244455544
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.42 E-value=0.093 Score=54.71 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=89.3
Q ss_pred CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe------
Q 002264 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY------ 580 (945)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~------ 580 (945)
.++.|+.|+.+| +.++++......... .....|..+...++-+.+++.+ ++.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-----d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-----DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-----CCccEEEEchhhcccccccccccc
Confidence 457899999998 888888332222222 2222399999999888888876 789999998765443311
Q ss_pred -------ccccCcceEEEE--EcCCCCEEEEEECCCcEEEEECCCC-----eeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 581 -------AGFRKKSNGVVQ--FDTTQNHFLAVGEDSQIKFWDMDNV-----NILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 581 -------~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
.......+...+ -...+...++.....+|.+|..... ...+.+... ..+.+++|. ++.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEe--CCEEEE
Confidence 001111233233 1234444555555568888877653 455666554 367899998 567887
Q ss_pred EECCCcEEEEECCCC
Q 002264 647 TTADNGFKILANAIG 661 (945)
Q Consensus 647 ~~~dg~i~iw~~~~~ 661 (945)
|..+ ...+.|+.++
T Consensus 154 ~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTG 167 (275)
T ss_pred EeCC-ceEEEecCCC
Confidence 7755 5778888765
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.2 Score=54.69 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=152.8
Q ss_pred cEEEEEEcCCCCEEEEEECCC-cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKH-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg-~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
....+...+++..+....... .+...+... ..... ....-...-..++.++.+.. .+++...++.|.+.| ...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 455678888886555443222 344444331 11111 11111134457888888886 556666678999999 5555
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
......-- .....+++.+. ++.++.+.. ++++.+.|-.+............+ ..++++|+|..++.+.. .
T Consensus 108 ~~~~~~vG-~~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVG-LGPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeec-cCCceEEECCC--CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 55444322 25566777664 445555444 688888888877776664333334 88999999998887753 4
Q ss_pred CceEEEEeCCCCceee-E----eccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 563 DSFLVEWNESEGTIKR-T----YAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
++.+.+.|.......+ . ... ......+.++++++.+++.... +.+...|..++............ .-..
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 8899999977665553 1 111 1134568899999977776543 58999999988877652222221 3467
Q ss_pred EEEcCCCCEEEEEECC-CcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTAD-NGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~d-g~i~iw~~~~~ 661 (945)
+..+|+|+.+.+.... +.+.+.|..+.
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 8999999999888554 78888888765
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.06 Score=52.74 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=146.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCc-EEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGE-ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
.--.|+|+|.-..-++.+-.-|+ ..++|..+.+..... .....+.+.||. .|||||.+|...
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-----------~s~~~RHfyGHG------vfs~dG~~LYAT 131 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-----------VSQEGRHFYGHG------VFSPDGRLLYAT 131 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-----------ecccCceeeccc------ccCCCCcEEEee
Confidence 44567888877655666666664 567888877655320 001112355564 699999999876
Q ss_pred EC-----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEE
Q 002264 425 FT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~ 499 (945)
-. -|.|-|||...+ +....++..|.-....+.|.+||. .++.+ +|-|...-.-|+....+ -+
T Consensus 132 Endfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvva--nGGIethpdfgR~~lNl-------ds 198 (366)
T COG3490 132 ENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVA--NGGIETHPDFGRTELNL-------DS 198 (366)
T ss_pred cCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEe--CCceecccccCccccch-------hh
Confidence 43 367999998743 444557778888888999999999 45544 34454441111111111 11
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec----CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE-eCCCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW-NESEG 574 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw-d~~~~ 574 (945)
+ .-++.+.|..+++.+.+.. .+...|..+...+||+.++.+-..+..+..--+. -...+
T Consensus 199 M----------------ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 199 M----------------EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred c----------------CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC
Confidence 1 1111222222333222222 2334678888888888777665422221111111 11223
Q ss_pred ceeeEeccccC------cceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 575 TIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 575 ~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
+.+..+..... ..+.+++.+.+..+++..+ ..+...+||..+|..+....... +..++- ...-+++.
T Consensus 263 ~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----aaGva~--~~~gf~vs 336 (366)
T COG3490 263 EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----AAGVAA--AKGGFAVS 336 (366)
T ss_pred CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc----ccccee--ccCceEEe
Confidence 33333322111 1466788887777777766 44567789999999887655432 233333 33345666
Q ss_pred ECCCcEEEEEC
Q 002264 648 TADNGFKILAN 658 (945)
Q Consensus 648 ~~dg~i~iw~~ 658 (945)
+.+|.+.++.-
T Consensus 337 sg~G~~~~~s~ 347 (366)
T COG3490 337 SGQGRIIFYSR 347 (366)
T ss_pred cCCceEEeccc
Confidence 67888887744
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.37 E-value=0.0075 Score=64.71 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=62.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EEccC-Ccc--cc---cceeecccc-ccEEEEEEecC---C------CeeEEEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQL---YSYAG-SND--LR---QHSQIDAHV-GAVNDLAFAYP---N------KLLCVVTC 471 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~v---wd~~~-~~~--~~---~~~~~~~h~-~~v~~l~~s~~---~------~~~~l~s~ 471 (945)
.++.+|++++||.|..+..+.+ |+... +.. .. -...+.... ..|+++.|-|= . ...+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999987776555 54321 111 01 011122111 57888777553 1 12389999
Q ss_pred eCCCcEEEEeCCCceEEEecCCCCCEEEEEeee
Q 002264 472 GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 472 s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
..+|.|++|..+|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999999988876667899999887643
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.055 Score=53.00 Aligned_cols=266 Identities=13% Similarity=0.116 Sum_probs=135.2
Q ss_pred EEEEEcCCCC-EEEEEECCCc-EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 589 GVVQFDTTQN-HFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 589 ~~~~~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
..++++|... -++.+-.-|+ ..++|..+.+....+.......---.=.|||||.+|...-.| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3467777643 3444444443 578899888777666544322223344799999999876543 78999999877
Q ss_pred ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccc
Q 002264 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (945)
.+.+-.+..+-... ..+.+.+||+.++.+.++-...-+....... ..+..-.+.+.
T Consensus 151 fqrvgE~~t~GiGp-----Hev~lm~DGrtlvvanGGIethpdfgR~~lN-------------------ldsMePSlvll 206 (366)
T COG3490 151 FQRVGEFSTHGIGP-----HEVTLMADGRTLVVANGGIETHPDFGRTELN-------------------LDSMEPSLVLL 206 (366)
T ss_pred cceecccccCCcCc-----ceeEEecCCcEEEEeCCceecccccCccccc-------------------hhhcCccEEEE
Confidence 66666666655543 3588999999987654421110000000000 00000111111
Q ss_pred ccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC-CCceeeeeccccccCCCccc
Q 002264 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 820 (945)
+... ...+...++|. ..+.-.|..++..+||..++.+--.|- ..+..+ .+...........+....+.
T Consensus 207 d~at---G~liekh~Lp~-~l~~lSiRHld~g~dgtvwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 207 DAAT---GNLIEKHTLPA-SLRQLSIRHLDIGRDGTVWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred eccc---cchhhhccCch-hhhhcceeeeeeCCCCcEEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCHHHH
Confidence 1111 11112223331 114556778888888875444322211 000000 00000000111112111111
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC-C-CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEE
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d-~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~ 898 (945)
. . ....|-+++...+..+++..+ . +...+||..+|..+..-.- .....++-.. .-+++.+.+|.+.
T Consensus 276 ~-----~--~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~---~gf~vssg~G~~~ 343 (366)
T COG3490 276 A-----A--FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK---GGFAVSSGQGRII 343 (366)
T ss_pred H-----H--HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc---CceEEecCCceEE
Confidence 0 1 234577888888777888777 4 5589999999988655432 1222333332 2344455677777
Q ss_pred EEe
Q 002264 899 IYN 901 (945)
Q Consensus 899 vwd 901 (945)
.+.
T Consensus 344 ~~s 346 (366)
T COG3490 344 FYS 346 (366)
T ss_pred ecc
Confidence 763
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.12 Score=53.77 Aligned_cols=240 Identities=13% Similarity=0.119 Sum_probs=125.7
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccC
Q 002264 592 QFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 592 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
.|.++...|+-+. ..+.|.-|+..++... .+..+.. +.++..-..+..|+++. ..+.+++.+++.. ...+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~---~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGG---FSSGALIDAGGRLIACE--HGVRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCC---cccceeecCCCeEEEEc--cccEEEeccCCce-eEEecc
Confidence 4666666444444 6778888888766433 2333332 34443333444454443 3466666654422 111111
Q ss_pred CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC
Q 002264 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (945)
Q Consensus 671 ~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (945)
..........+.....|+|.+.+...+... . . ..... ..-.+|.+... .
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~--~--~-----------------------~~~~~-~~G~lyr~~p~---g 152 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFD--L--G-----------------------KSEER-PTGSLYRVDPD---G 152 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccc--c--C-----------------------ccccC-CcceEEEEcCC---C
Confidence 111111234566788888888764333100 0 0 00000 11134444310 1
Q ss_pred cceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 751 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
....+ +.. +-..-..++||||++.+..+.. .+.|.-|++........+. ........
T Consensus 153 ~~~~l-~~~---~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------------~~~~~~~~-- 210 (307)
T COG3386 153 GVVRL-LDD---DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------------RGFVDFDE-- 210 (307)
T ss_pred CEEEe-ecC---cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------------ceEEEccC--
Confidence 11111 011 2334568999999998877776 4777777654311111111 00000111
Q ss_pred cCCceeEEeecCCCceEEecC-CC-eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d~-~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~ 892 (945)
..+..-.++...+|.+.+++- +| .|.+|+.+ ++++..+..+...+++++|-..+.+.|.+.+
T Consensus 211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 345556788889999886555 44 79999988 9999998877788899999653444444443
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.084 Score=54.88 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=130.1
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcE
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i 430 (945)
.|.|++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-..+..|+++. . -+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~-g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-H-GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-c-cc
Confidence 4567777677777778899999987765431 11 233445555544555555553 2 36
Q ss_pred EEEEccCCcccccceeec-cc-cccEEEEEEecCCCeeEEEEEeC------C-----CcEEEEeCCCceEEEecCCCCCE
Q 002264 431 QLYSYAGSNDLRQHSQID-AH-VGAVNDLAFAYPNKLLCVVTCGD------D-----KLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~~~~~~~l~s~s~------d-----~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
.+++.+++.......... +. ....+.+...|+|. +.++... + |.++..|..+..+..+..+-..-
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 777776655422211111 11 24566788899998 3332222 1 23444444566666667666677
Q ss_pred EEEEeeecCCccEEEEE-EcCCeEEEEEccC-----CCe--eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 498 YSICPHHKENIQFIFST-AIDGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~-----~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+.++|+|+ ++.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+.+++.. +.+.|..|
T Consensus 166 NGla~SpD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~ 240 (307)
T COG3386 166 NGLAFSPD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRF 240 (307)
T ss_pred CceEECCC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEE
Confidence 89999885 4555554 4457888887762 111 1122223334456777788887754432 23489999
Q ss_pred eCCCCceeeEeccccCcceEEEEEc-CCCCEEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 604 (945)
+.. ++++..+..... .+++++|. ++.+.|++.+
T Consensus 241 ~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 988 888888877654 45566664 4555555554
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.20 E-value=0.00076 Score=45.13 Aligned_cols=39 Identities=33% Similarity=0.455 Sum_probs=34.9
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455677778999999999999999999999999999996
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.20 E-value=0.069 Score=57.06 Aligned_cols=214 Identities=15% Similarity=0.132 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCC--CccEEEEEEcCC----CCEEEEEEC----------CCcE
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPD----GNYVGVAFT----------KHLI 430 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~i~~s~~----g~~las~~~----------dg~i 430 (945)
+.|+|.|..+.+.+.... +..+ -..+..+.+..+ ..+|++|+. .|.|
T Consensus 2 s~i~l~d~~~~~~~~~~~-----------------l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFE-----------------LEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp -EEEEEETTTSSEEEEEE-----------------EETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred cEEEEEeCCCCeEEEEEE-----------------CCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEE
Confidence 357888877776654321 2221 123334444433 467887753 2889
Q ss_pred EEEEccCC----cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEE-EecCCCCCEEEEEee
Q 002264 431 QLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF-NFEGHEAPVYSICPH 503 (945)
Q Consensus 431 ~vwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~-~~~~~~~~v~~~~~~ 503 (945)
.++++... ..++.... ....++|++++-- .+ .++.+. .+.|.+|+ ...+ ... .+......+.++...
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred EEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 99999884 23332222 2457889998877 33 344333 58899999 4444 322 222233366666643
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCe-eE--EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-------
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGS-RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------- 573 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~------- 573 (945)
+++++.|.....+.++.++.... .. ........++++.+-++++.++++- .++.+.++....
T Consensus 139 ----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 139 ----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp ----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTT
T ss_pred ----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccc
Confidence 25899999888888886655333 22 2233455788999987776665554 488888887652
Q ss_pred C--ceeeEeccccCcceEEE---EEcC--CC------CEEEEEECCCcEEE
Q 002264 574 G--TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKF 611 (945)
Q Consensus 574 ~--~~~~~~~~~~~~~~~~~---~~~~--~~------~~l~~~~~dg~i~i 611 (945)
+ +......-|-+..++++ ++.| .+ ..++.++.+|.|.+
T Consensus 211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 22223333333345554 3333 11 13666777777763
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0017 Score=70.17 Aligned_cols=94 Identities=17% Similarity=0.383 Sum_probs=73.2
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE-EEEEcCCCCEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~i~~s~~g~~las 423 (945)
..|.-+.|+|.-. |+|++..+|.|.+..+.- + ++|. +.-|...++ +++|.|||+.||.
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-q-------Rlwt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNW-Q-------RLWT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEecc-c-------eeEe------------ccCCCCccceeeeecCCCCEEEE
Confidence 4789999999998 899999999999998863 2 2333 333555666 9999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEec
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 461 (945)
|-.||+|++.|+.+|..+... ...-..+|.++-|.+
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998766531 223455677787864
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0018 Score=69.88 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCee-EEEeecCCCceEEEeecCceEEEEecccceEE
Q 002264 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~ 908 (945)
...+.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++..|...++ +++|-| ||++||+|-.||+|++-|+++|..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999999 8999999988 788899987887777 999999 8999999999999999999999877
Q ss_pred EEe-cCCCcceeEEEec
Q 002264 909 SKL-KGHQKRITGLAFS 924 (945)
Q Consensus 909 ~~l-~~h~~~V~~l~~s 924 (945)
... ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 662 2345678888886
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.07 E-value=0.44 Score=51.53 Aligned_cols=84 Identities=12% Similarity=0.209 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC----------------C-E-E
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ----------------N-H-F 600 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~-l 600 (945)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+....-+.....+ . + +
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 367889999998876664 3589999999999999999988877444333322211 1 1 2
Q ss_pred EEEECCCcEEEEECCCCeeEEEeecC
Q 002264 601 LAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
+-+-..|.|.||.+++|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 23557899999999999888877654
No 380
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.04 E-value=0.013 Score=67.85 Aligned_cols=69 Identities=12% Similarity=0.232 Sum_probs=54.6
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
....|++-+.+|. |++|+.+|.||+||- .|..-.+.+++ -..+|..|+++.||+
T Consensus 578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-----------------------~g~~AKT~lp~--lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 578 NNFSCFATTEDGY-IAVGSNKGDIRLYDR-----------------------LGKRAKTALPG--LGDPIIGIDVTADGK 631 (794)
T ss_pred CCceEEEecCCce-EEEEeCCCcEEeecc-----------------------cchhhhhcCCC--CCCCeeEEEecCCCc
Confidence 3467788888886 999999999999961 12233344666 679999999999999
Q ss_pred eEEecCCCeEEEEec
Q 002264 845 YVMSATGGKISLFNM 859 (945)
Q Consensus 845 ~la~~sd~~i~iwd~ 859 (945)
|+++.++..|.++++
T Consensus 632 wilaTc~tyLlLi~t 646 (794)
T PF08553_consen 632 WILATCKTYLLLIDT 646 (794)
T ss_pred EEEEeecceEEEEEE
Confidence 999998888888885
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.93 E-value=0.072 Score=56.29 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=110.1
Q ss_pred CccEEEEEE-cCCeEEEEEccCCC----eeEEecC---CC----CeEEEEEEcCCCCEEEEEeec--CCCCceEEEEeCC
Q 002264 507 NIQFIFSTA-IDGKIKAWLYDTMG----SRVDYDA---PG----HWCTTMLYSADGSRLFSCGTS--KDGDSFLVEWNES 572 (945)
Q Consensus 507 ~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~~--~d~~~~i~iwd~~ 572 (945)
+.++|+..+ ..++|.+.|+.+.. ....+.. .. .....+-.-|+|+.++++-.+ +++.+.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 67889999987432 1222221 00 122334445899888876553 3456678899998
Q ss_pred CCceeeEeccccCc--ceEEEEEcCCCCEEEEEE--------------------CCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 573 EGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVG--------------------EDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 573 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+.+........... .-..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88887777654331 244577888888888853 23569999999999999998764322
Q ss_pred CccEEEEcC--CCCEEEEEE-CCCcEEEEEC-CCCc---cccccccCC-----cc-------ccccCcceeeeecccccc
Q 002264 631 NLPRLRFSK--EGNLLAVTT-ADNGFKILAN-AIGL---RSLRAVENP-----PF-------EALRTPIESVALKVSASS 691 (945)
Q Consensus 631 ~v~~v~~sp--~g~~l~~~~-~dg~i~iw~~-~~~~---~~~~~~~~~-----~~-------~~~~~~i~~v~~s~~g~~ 691 (945)
....+.|.. +..+=++++ -...|..|-- ..+. +.+-.+... .. .....-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 345566654 444433332 2334444433 3331 011111110 00 011233566777777777
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC----------
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST---------- 761 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---------- 761 (945)
|. +++..+|.++.||+.+...+...-.+.+-+.-
T Consensus 326 LY------------------------------------vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g 369 (461)
T PF05694_consen 326 LY------------------------------------VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG 369 (461)
T ss_dssp EE------------------------------------EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred EE------------------------------------EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence 65 56677799999999875555444333332210
Q ss_pred -CCccceEEEEEecCCCeEEEeee
Q 002264 762 -DTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 762 -~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
.-.+...-+..|-||++|....+
T Consensus 370 ~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 370 KRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ----S----EEE-TTSSEEEEE--
T ss_pred cccCCCCCeEEEccCCeEEEEEee
Confidence 01123356778888888876543
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.93 E-value=0.0022 Score=42.75 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=34.3
Q ss_pred ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355677778899999999999 788999999999999996
No 383
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.83 E-value=0.15 Score=54.50 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=103.9
Q ss_pred cEEEEe-CCCceEEEecC-CCCCEEEEEeee-cC----CccEEEEEEc----------CCeEEEEEccCC----CeeE--
Q 002264 476 LIKVWE-LSGRKLFNFEG-HEAPVYSICPHH-KE----NIQFIFSTAI----------DGKIKAWLYDTM----GSRV-- 532 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~-~~~~v~~~~~~~-~~----~~~~l~s~~~----------dg~i~iwd~~~~----~~~~-- 532 (945)
.|++.| .+.+.+..+.- ....+.+++... .. ...+++.|+. .|.|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577777 56665544432 122344444322 21 1367777753 289999999884 1111
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 611 (945)
......++|++++-- +++ ++++. .+.|.+|++...+ ....-..+....+.++.. .++++++|.....+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEE
Confidence 112235578888765 344 55554 6789999998877 544433333323444444 3679999998888888
Q ss_pred EECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 612 WDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 612 wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+..+. ...+..+........+.++.+-++++.++.+..+|.+.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 75543 3323333333333367888888776799999999999999875
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.73 E-value=0.024 Score=64.84 Aligned_cols=148 Identities=11% Similarity=0.131 Sum_probs=87.1
Q ss_pred cceEEEEEecCCCeEEEeee------cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEe
Q 002264 765 SKVVRLLYTNSAVGLLALGS------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~ 838 (945)
..+...+++|||+.++.... |+.-.||-.+ . .+.. .....+ ...+.-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~--------------------~-gg~~-~~lt~g----~~~t~Ps 403 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGP--------------------L-GGVA-VQVLEG----HSLTRPS 403 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEe--------------------C-CCcc-eeeecC----CCCCCce
Confidence 46788999999999887762 4444555321 1 1111 111222 2377889
Q ss_pred ecCCCceEEecCCC-e-EEEE-----------eccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEE---Eec
Q 002264 839 LSKNDSYVMSATGG-K-ISLF-----------NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI---YNV 902 (945)
Q Consensus 839 ~s~dg~~la~~sd~-~-i~iw-----------d~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~v---wd~ 902 (945)
|+|||+.+++.+++ . +++. +++.++... ...+.|..+.||| ||..||... +|.|+| -..
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence 99999988877643 2 3333 333322221 2345799999999 788777665 578887 444
Q ss_pred ccce-EE---EEecC-CCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 903 RVDE-VK---SKLKG-HQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 903 ~~~~-~~---~~l~~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
..|+ .+ ..+.. -...+.++.|..++.++ .+..++...+|.+
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 4554 11 11222 23346889999999855 4444444455643
No 385
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=96.73 E-value=0.0018 Score=58.01 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 002264 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (945)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (945)
.++|+|+.+.||||+..|..++|..|+.+.-..+...+.+++++|+.+....+..+++....++. +..+-..|
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL 107 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLL 107 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHH
Confidence 39999999999999999999999999998877776667899999999988888777776655543 33444566
Q ss_pred HHHHHh
Q 002264 144 LIELKK 149 (945)
Q Consensus 144 ~~~l~~ 149 (945)
+..|++
T Consensus 108 ~~~L~~ 113 (133)
T cd08044 108 LRFLES 113 (133)
T ss_pred HHHHHH
Confidence 665554
No 386
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=96.73 E-value=0.0015 Score=59.25 Aligned_cols=79 Identities=14% Similarity=0.287 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 002264 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (945)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (945)
.++|+|+.|.||+|+..|..++|..|+.+.-.-+...+.+++++|..+....+..+++....++. +..+-..|
T Consensus 39 ~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL 118 (142)
T PF04494_consen 39 RLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLL 118 (142)
T ss_dssp GGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHH
Confidence 38999999999999999999999999999877776667788999988777666655554443333 33444555
Q ss_pred HHHHHh
Q 002264 144 LIELKK 149 (945)
Q Consensus 144 ~~~l~~ 149 (945)
+..|+.
T Consensus 119 ~~fL~~ 124 (142)
T PF04494_consen 119 LQFLQE 124 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.72 E-value=0.091 Score=44.24 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=66.6
Q ss_pred EEEEEEcC---CC-CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 409 VSRVAWSP---DG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 409 V~~i~~s~---~g-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
|+++++.. || +.|++|+.|..|++|+-+ +.+. ++. -.+.|++++-...+ .|+.+-.+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeCcc
Confidence 56676665 33 579999999999999743 2232 222 45678888877764 589999999999999533
Q ss_pred ceEEEecCCCCCEEEEEee-ecCCc-cEEEEEEcCCeEE
Q 002264 485 RKLFNFEGHEAPVYSICPH-HKENI-QFIFSTAIDGKIK 521 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~-~~~~~-~~l~s~~~dg~i~ 521 (945)
+ +...+.... +.++++. ...+| .-|++|-.+|.|-
T Consensus 73 R-lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 R-LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3 334443333 5555543 33232 3578888888764
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.72 E-value=0.16 Score=58.30 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=119.4
Q ss_pred CCCEEEEEECCC------cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CC
Q 002264 417 DGNYVGVAFTKH------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (945)
Q Consensus 417 ~g~~las~~~dg------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~ 483 (945)
.+.+++.||.++ .+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 455666676663 57888888763321 11222 222234455543 44 78889888 3567788 55
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCe-----EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
++-. .+..-..+-.......- +|.+.++||.||. +-.||..+.+-...-......-..-...-+|+..+++|.
T Consensus 359 ~~W~-~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 359 NQWT-PVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred Ccee-ccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 4422 22211111111111111 5678889998874 667776654433222111111111122235666667765
Q ss_pred cCCCC--ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCeeEEEeecCCCCCC
Q 002264 559 SKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-----IKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 559 ~~d~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
+...+ ..+..||..+.+....-.-.....-..++. -++...++||.|+. |..||..+.+....-........
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 43322 578899998876544332222211112222 24566677776653 77788877665444222221112
Q ss_pred ccEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg-----~i~iw~~~~~ 661 (945)
+..+.+ +++..++|+.|| +|..||..++
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 222222 567778888775 3555655544
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.044 Score=58.34 Aligned_cols=139 Identities=8% Similarity=0.062 Sum_probs=92.0
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC--------EEEEEeecCCCCceEEEEeCCCCc--eeeE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--------RLFSCGTSKDGDSFLVEWNESEGT--IKRT 579 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~~~d~~~~i~iwd~~~~~--~~~~ 579 (945)
++.++.....++-.|++.++.+-....+.. |+-+.+.|+.+ .|+..+ +..|.-||++-.. .+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs-----~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLS-----DNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeec-----CCceEEecccccCcceeee
Confidence 445556666788888888888888777766 66777777654 233332 7789999987432 2222
Q ss_pred ecccc---CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 580 YAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 580 ~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.+++. +....|.+-..+ .++++|+.+|.|++||.-.......+++-+. +|..|..+.+|++|+..+. ..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcEEEEecc-cEEEEE
Confidence 22221 112444444444 5899999999999999844444444554444 8999999999999887664 466665
Q ss_pred EC
Q 002264 657 AN 658 (945)
Q Consensus 657 ~~ 658 (945)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
No 390
>PRK10115 protease 2; Provisional
Probab=96.51 E-value=2.7 Score=49.73 Aligned_cols=243 Identities=8% Similarity=0.014 Sum_probs=118.8
Q ss_pred ccEEEEEEcCCCCEEEEEEC-----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----Cc
Q 002264 407 ISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~ 476 (945)
-.+..+.|||||++||.+.. ...|++.|+.+|..+.. .+.+ .. ..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~~--~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-VE--PSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-cc--eEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 45778899999999987643 23588999988864321 1221 11 46999999985 34443322 35
Q ss_pred EEEEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccC--CCeeEEecCCCCeEEEEEEcC
Q 002264 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (945)
Q Consensus 477 i~vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 548 (945)
|..++ -++ +....+........ +......++++++..+. ++.+.+++.+. +.....+.........+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 66677 444 22333443333333 22222335565554443 34678888533 222222222222222222 22
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEE--ECCCCeeEEEeec
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW--DMDNVNILTSTDA 625 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~ 625 (945)
+..++..+..+.....|...++.. ++....+.......+..+.+.. +..+++...+|.-+++ +..++ .+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 344444442222244455556552 3322333332333567777762 3444455566665544 54333 3333332
Q ss_pred CCCCCCccEEEEc--CCCC-EEEEEEC---CCcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~s--p~g~-~l~~~~~---dg~i~iw~~~~~ 661 (945)
... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 122223344 3433 4444433 367888888765
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.47 E-value=0.28 Score=52.08 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=91.3
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-CCCccEEEEEEcCCCCEEEEEE--CC----
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--TK---- 427 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~s~~g~~las~~--~d---- 427 (945)
+.++|++-|-.++.|.|.|+.+.-... +-.|+.+.. .+.. ..-..-..+-.-|+|+.++++- .+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 456656656578899999987533211 001111110 0010 0111222334447898888763 22
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe--------------------CCCcEEEEe-CCCce
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s--------------------~d~~i~vwd-~~~~~ 486 (945)
|-+.++|-++-+.......-.+....-+.+-|.|..+ .++|+. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 3477777665443332111112233456777888777 777764 246899999 77888
Q ss_pred EEEecCCC--CCEEEEEeeecCCccEEEEEE-cCCeEEEEEc-cCCC----eeEEecCC-----------------CCeE
Q 002264 487 LFNFEGHE--APVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (945)
Q Consensus 487 ~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i 541 (945)
++++.--. .....+.|..+++..+-++++ -..+|..|-- +.+. .+..+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88776433 235567776666554444433 3444444432 2221 11111110 2357
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
+.+.+|.|.++|.++.. ..|.++.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998876 6899999999874
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.44 E-value=0.097 Score=44.08 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=63.5
Q ss_pred EEEEEEe---CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 347 VISMDFH---PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 347 V~~v~fs---p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
|+++++. -||..-|++||.|..|+||+-.. .+.+ +. -.+.|+++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-------------------i~-e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-------------------IT-ETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-------------------Ee-cccceEEEEEcCC-CEEEE
Confidence 5555554 45656689999999999998432 2211 11 2457778777666 56888
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEec---CCCeeEEEEEeCCCcEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~~~l~s~s~d~~i~ 478 (945)
+..+|+|-+|+-... +- ..+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999975321 11 122 222355655543 4443 577887777663
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.0093 Score=68.61 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCceEEecC-CCeEEEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCccee
Q 002264 842 NDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 919 (945)
.+.++|.|+ .|.+...|+... .+...=..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 566788887 567888887642 11122222456799999999 999999999999999999999999998887777766
Q ss_pred EEEe---cCCcceeeeecCCceEEEEec
Q 002264 920 GLAF---STSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 920 ~l~~---s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++-+ ..++..++++..-|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6554 356667888877775 6654
No 394
>PRK10115 protease 2; Provisional
Probab=96.32 E-value=3.5 Score=48.88 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=120.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.+..+.+||||++++.+-+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 6778899999996555433333 688899988764321 1111 11469999999877
Q ss_pred EEEECC------CcEEEEEccCCcc-cccceeeccccccEE-EEEEecCCCeeEEEEEe-CCCcEEEEe--C-CCceEEE
Q 002264 422 GVAFTK------HLIQLYSYAGSND-LRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG-DDKLIKVWE--L-SGRKLFN 489 (945)
Q Consensus 422 as~~~d------g~i~vwd~~~~~~-~~~~~~~~~h~~~v~-~l~~s~~~~~~~l~s~s-~d~~i~vwd--~-~~~~~~~ 489 (945)
+....+ ..|+.+++.++.. -.. .+........ .+..+.+++.+++-+.+ .++.+.+++ . .+.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 766442 3578888887721 111 2322223333 33334477753322222 245788888 2 3432222
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+..-......+. +. .+.+++....+ ..|...++........+..+ ...+..+.+. ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 222222223322 22 22333333222 23433444422222222233 3367777776 445554443 23455
Q ss_pred eEEEEeCCCCceeeEec-cccCcceEEEEEc--CCCC-EEEEEE---CCCcEEEEECCCCe
Q 002264 565 FLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (945)
.+++++..++.. ..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 339 ~l~~~~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTREV-IGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCce-EEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 667777654433 3332 1111 22323344 3333 444433 45678889988765
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.05 Score=57.92 Aligned_cols=144 Identities=12% Similarity=0.125 Sum_probs=97.3
Q ss_pred CCCEEE-EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeE-----EEEEeCCCcEEEEe--CCCc-eE
Q 002264 417 DGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC-----VVTCGDDKLIKVWE--LSGR-KL 487 (945)
Q Consensus 417 ~g~~la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~-----l~s~s~d~~i~vwd--~~~~-~~ 487 (945)
+.++|+ ++.....++-.|++.|+.+. ...-|.. |.-+.+.|+.+.-. -+.|-.|+.|.-|| ..+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 45555668888999998776 4544554 77788888754211 13455688999999 5555 23
Q ss_pred EEecCCC----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 488 FNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
..-.+|. ....|.+- .++ .++++||.+|.|++||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2222321 23444443 334 4899999999999999644444456777788999999999999999876 6
Q ss_pred ceEEEEeCC
Q 002264 564 SFLVEWNES 572 (945)
Q Consensus 564 ~~i~iwd~~ 572 (945)
..+.+.+..
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 677777753
No 396
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.22 E-value=0.42 Score=54.91 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=97.4
Q ss_pred ccccEEEEEEecCCCeeEEEEE----eCCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTC----GDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------ 517 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~----s~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------ 517 (945)
....+.+.+++|+|+.+.++.. ..|. .|.+++..+.......+. ....-.|+| +|..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECC--CCCceEEEecCcceEEE
Confidence 3346889999999995322221 1244 444445433332222222 255566665 55556555432
Q ss_pred ------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE---EeCCCCcee----eEecccc
Q 002264 518 ------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE---WNESEGTIK----RTYAGFR 584 (945)
Q Consensus 518 ------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i---wd~~~~~~~----~~~~~~~ 584 (945)
+.+.+.+++.+.... .....|..+.|||||.+++... ++.|++ -....|... ..+....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-----GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-----CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 223323333322222 2234699999999999998876 456766 444444311 1122112
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
...+..+.|..++.. +++..++.-.+|.+.- |.....+.......++..++-+++ .++....+|.+.
T Consensus 496 ~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 496 GDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CCccccceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 213466889988874 4555544444454321 222222233222346667776653 455555565443
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.014 Score=40.74 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD 378 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~ 378 (945)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 35799999999999 8999999999999998 444
No 398
>PHA02713 hypothetical protein; Provisional
Probab=96.20 E-value=0.43 Score=54.96 Aligned_cols=219 Identities=9% Similarity=0.040 Sum_probs=102.7
Q ss_pred cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CCCceEEEecCCCCCE--EE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRKLFNFEGHEAPV--YS 499 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~~~~~~~~~~~~~~v--~~ 499 (945)
.+..||..+++-.. ...+...... .+++. -++. +++.||.+ ..+..|| .++.- ..+..-..+. .+
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~-~~~a~-l~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~ 346 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIIN-YASAI-VDNE--IIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFS 346 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccc-eEEEE-ECCE--EEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhcee
Confidence 56778887754221 1122211111 12222 2455 66677753 3467788 44432 2222111111 11
Q ss_pred EEeeecCCccEEEEEEcCC-----eEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCC-----------
Q 002264 500 ICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKD----------- 561 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d----------- 561 (945)
++. - +|.+.+.||.++ .+..||..+..-...-..+ ......+. -+|+..+.||.+..
T Consensus 347 ~~~--~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 347 LAV--I-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEE--E-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccc
Confidence 221 1 457777887764 4778887764322211111 11111222 35666666654211
Q ss_pred --------CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC------CcEEEEECCC-CeeEEEeecC
Q 002264 562 --------GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDN-VNILTSTDAE 626 (945)
Q Consensus 562 --------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~ 626 (945)
....+..||..+.+....-.-... ........-++...+.||.+ ..+..||..+ .+-...-..+
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 024578899887654332221111 11111122235566666643 2467899887 4433222222
Q ss_pred CCCCCccEEEEcCCCCEEEEEECCC--cEEEEECCCC
Q 002264 627 GGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIG 661 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g~~l~~~~~dg--~i~iw~~~~~ 661 (945)
........+++ +|++.++||.+| .+-.||..+.
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 21112222333 788889999887 5666766655
No 399
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.15 E-value=0.13 Score=59.80 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=96.3
Q ss_pred CCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC-EEEEEeeec---CCccEEEEEEcCCeEEEEEccCCCee-EEec-
Q 002264 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSR-VDYD- 535 (945)
Q Consensus 463 ~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~- 535 (945)
...++|........|+-.| ..|+.+..+..+... |..++-... -+..-.+.|-.+..+..||.+..... ..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3333455555667888889 899999999887654 766653211 01234567778889999999875422 2111
Q ss_pred ---CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 536 ---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 536 ---~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
......+|++-+.+|. |++++. +|.|++||--..+....+++... +|..+.++.||+++++.+. ..|.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEE
Confidence 1233677888877775 555654 89999999543333344555444 8999999999999988774 456666
Q ss_pred EC
Q 002264 613 DM 614 (945)
Q Consensus 613 d~ 614 (945)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.024 Score=39.59 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=29.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~ 439 (945)
...|.+++|+|..++||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.98 E-value=3.1 Score=45.24 Aligned_cols=273 Identities=10% Similarity=0.150 Sum_probs=144.3
Q ss_pred CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-----CCCEEEEEECCC
Q 002264 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTKH 428 (945)
Q Consensus 354 p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-----~g~~las~~~dg 428 (945)
++++..+++||..|.++||+...+..... ++ -+-..-..+|..++.-+ +...||+ -.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 34444689999999999999854432211 00 00111245677766543 2334554 4566
Q ss_pred cEEEEEccCC-------cccccceeeccccc--cEEEEEEecC----CCeeEEEEEeCCCcEEEEeCCCceE-EEecC--
Q 002264 429 LIQLYSYAGS-------NDLRQHSQIDAHVG--AVNDLAFAYP----NKLLCVVTCGDDKLIKVWELSGRKL-FNFEG-- 492 (945)
Q Consensus 429 ~i~vwd~~~~-------~~~~~~~~~~~h~~--~v~~l~~s~~----~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~-- 492 (945)
.+.||.+... ...... .+..|.- ....++.-|- |+. .+..=+.||.+.+++.+.-.. ..+.+
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~-~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLE-LIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEE-EEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 7888887321 111111 1223332 2333343332 233 778889999999999544443 33332
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-----------------------eeEEecCCCC--eEEEEEEc
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------SRVDYDAPGH--WCTTMLYS 547 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~--~i~~~~~s 547 (945)
..+++ ++.+.. ..+++++.+..+..|....-. ..+++..... .|..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 23443 444544 468888888888888642100 0011111111 33344444
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC----CC---CEEEEEECCCcEEEEECCCCeeE
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
.....+++.+ ...+.+.+. +|......+- .-.......+.. .+ ..+++++.++.+.||.= .+++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEE
Confidence 4444555554 667777775 3543332222 111222222221 22 25888999999999863 3444
Q ss_pred EEeecCCCCCCccEEE---EcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLR---FSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~---~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
........ +| ++. |..-...|++-+.+|.+.+-=+.|.
T Consensus 322 WsA~l~~~--PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHV--PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCC--CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 44433221 22 332 2233568888899999998877665
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.98 E-value=1.1 Score=51.55 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=114.8
Q ss_pred EEEEEeCcC------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC-C---
Q 002264 359 LLLVGSSNG------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-H--- 428 (945)
Q Consensus 359 llasgs~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d-g--- 428 (945)
+++.|+.++ .+..+|..+++...-.+ +. +...-.+++.. +|...++||.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 677777663 67788877764332100 11 11122233333 56778888888 3
Q ss_pred --cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEeCCCceEEEecCCCCCEEEEE
Q 002264 429 --LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWELSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 429 --~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~v~~~~ 501 (945)
++..||..+++-.. ...+............ +|. +.+.||.|| ++-.||.....-...........+..
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 47888887765322 2223222222222222 465 778888886 46678832222222221222222222
Q ss_pred eeecCCccEEEEEEcCC------eEEEEEccCCCeeEEecCCCCeE-EEEEEcCCCCEEEEEeecC-CCCceEEEEeCCC
Q 002264 502 PHHKENIQFIFSTAIDG------KIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCGTSK-DGDSFLVEWNESE 573 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~ 573 (945)
...- +|.+.++||.++ ++..||..+..-...-....... ..++ .-++...+.+|.++ .....+..||..+
T Consensus 423 v~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 423 VAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCC
Confidence 2222 567888888654 46778776654433222211111 1122 23455666666432 1133477899887
Q ss_pred CceeeEecccc-CcceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCee
Q 002264 574 GTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQ-----IKFWDMDNVNI 619 (945)
Q Consensus 574 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~ 619 (945)
.+....-.-.. ......+. -++...++|+.||. |..||..+.+-
T Consensus 501 ~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 76554421111 11122222 23556667776653 55566555443
No 403
>PHA02713 hypothetical protein; Provisional
Probab=95.94 E-value=0.55 Score=54.07 Aligned_cols=195 Identities=5% Similarity=-0.074 Sum_probs=91.9
Q ss_pred CCCEEEEEECC------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEe-CCC
Q 002264 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSG 484 (945)
Q Consensus 417 ~g~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd-~~~ 484 (945)
++...+.||.+ ..+..||..++.-. ....+.........+ .-+|+ +.+.||.++ ++..|| .++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~--~~~g~--IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA--VIDDT--IYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE--EECCE--EEEECCcCCCCCCceEEEEECCCC
Confidence 67777777753 34778888765321 111222111222222 22565 667777654 477889 444
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC-----------------------eEEEEEccCCCeeEEecCCCCeE
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----------------------KIKAWLYDTMGSRVDYDAPGHWC 541 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~i 541 (945)
+- ..+.....+....+...- +|.+.+.||.++ .+..||..+.+-...-.......
T Consensus 378 ~W-~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 378 KW-KMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred eE-EECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 32 222221111111111011 456777777653 46667766543222111111111
Q ss_pred EEEEEcCCCCEEEEEeecCCC--CceEEEEeCCC-Ccee--eEeccccCcceEEEEEcCCCCEEEEEECCC--cEEEEEC
Q 002264 542 TTMLYSADGSRLFSCGTSKDG--DSFLVEWNESE-GTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDM 614 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~ 614 (945)
..-...-+++..+.||.+... ...+..||..+ .+.. ..+..... ....+.+ ++...++||.+| .+..||.
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 111122345555555542111 13467899887 4433 22322221 2222333 567778888777 6667777
Q ss_pred CCCeeEE
Q 002264 615 DNVNILT 621 (945)
Q Consensus 615 ~~~~~~~ 621 (945)
.+.+-..
T Consensus 533 ~~~~W~~ 539 (557)
T PHA02713 533 YTYEWNH 539 (557)
T ss_pred ccccccc
Confidence 6665443
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.92 E-value=5.4 Score=47.43 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=111.9
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCC--------EEEEEeee--------------cCCccEEEEEEcCCeEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP--------VYSICPHH--------------KENIQFIFSTAIDGKIKAW 523 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~iw 523 (945)
.++.++.++.|.-.| .+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 345555566666677 667666555422110 11222211 1123478888899999999
Q ss_pred EccCCCeeEEecCCCCe------------EEEEEEcC--CCCEEEEEeecCC------CCceEEEEeCCCCceeeEeccc
Q 002264 524 LYDTMGSRVDYDAPGHW------------CTTMLYSA--DGSRLFSCGTSKD------GDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~------------i~~~~~s~--~~~~l~~~~~~~d------~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
|.++++....+...+.. ...+.-.| .+..+++++...| -.+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99998888765332110 00111112 2345555543222 2688999999999988766421
Q ss_pred c----------------Ccce-EEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCeeEEEeecCCC
Q 002264 584 R----------------KKSN-GVVQFDTTQNHFLAVG------------------EDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 584 ~----------------~~~~-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
. ...+ ...+++++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0001 2345666655555532 134567778888988877765322
Q ss_pred C-------CCccEEEEcC-CCC---EEEEEECCCcEEEEECCCCcc
Q 002264 629 L-------PNLPRLRFSK-EGN---LLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 629 ~-------~~v~~v~~sp-~g~---~l~~~~~dg~i~iw~~~~~~~ 663 (945)
. ....-+.+.. +|+ .++.++.+|.+.++|.++++.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0 0111122322 553 788999999999999999943
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.88 E-value=0.94 Score=43.37 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=65.3
Q ss_pred EEEEEecCCCeEEEeee-cCeEEEEeec--CCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 768 VRLLYTNSAVGLLALGS-NGVQKLWKWH--RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~-dg~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
.+++|+.|.+.+....+ +-+|.-||.+ ....+.. -.++|+++.+.....+ .-.+++..+|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--------~~i~dlrk~~~~e~~~--------PDGm~ID~eG~ 224 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--------KVIFDLRKSQPFESLE--------PDGMTIDTEGN 224 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCc--------ceeEEeccCCCcCCCC--------CCcceEccCCc
Confidence 56888888887766655 6777778743 2222111 1234555443322111 22345566777
Q ss_pred eEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeec
Q 002264 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (945)
Q Consensus 845 ~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (945)
+.++.- .++|.-.|..+|+.+.+++-....|+|++|-.
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 666554 78899999999999999998889999999975
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.86 E-value=0.02 Score=54.37 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=72.5
Q ss_pred CceEEecC-CCeEEEEeccC-ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCC-ccee
Q 002264 843 DSYVMSAT-GGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRIT 919 (945)
Q Consensus 843 g~~la~~s-d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 919 (945)
+..+++|+ +|.|.+|+..- +.....+..-...|-+..-.-+++.+..++..||.|+-|++.-++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34556665 89988887652 122122222233344443333356689999999999999999999888888888 6777
Q ss_pred EEEecCCcceeeee--cCCceEEEEec
Q 002264 920 GLAFSTSLNILVSS--GADAQVTLCVE 944 (945)
Q Consensus 920 ~l~~s~dg~~l~s~--~~Dg~i~vWdl 944 (945)
.+..+..++.++.+ |.|..++.|++
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcch
Confidence 77777788888888 88888888886
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.77 E-value=0.29 Score=49.78 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE-CCCCc
Q 002264 587 SNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA-NAIGL 662 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~-~~~~~ 662 (945)
.+...+++++++.+++.. ....++++... ....... .. ..+....|++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 577789999999887766 33445555543 3222221 12 2678889999988887777777777774 33332
Q ss_pred cccccccCCccccccCcceeeeecccccceec
Q 002264 663 RSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
........... ...|..+.++|||.+++.
T Consensus 100 ~~~~~v~~~~~---~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 100 GEPVEVDWPGL---RGRITALRVSPDGTRVAV 128 (253)
T ss_pred ceeEEeccccc---CCceEEEEECCCCcEEEE
Confidence 21111211111 116899999999999874
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.16 Score=59.09 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
.+..++.|+..|.|-..|+.+. +.....-..-.++|++++|+.+|. .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999999888764 221111223467999999999999 889999999999999 77888888888888
Q ss_pred CEEEEEeee-cCCccEEEEEEcCCeEEEEEc
Q 002264 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (945)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 525 (945)
+.+++-+.- .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777765432 334456777777776 4544
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.62 E-value=3.6 Score=43.89 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEE-EeecCCCC-CCccEEEEcCCCCEEEEEECCCcEE
Q 002264 597 QNHFLAVGEDSQIKFWDMDNVNILT-STDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++.+.+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3445544456778888876543222 22211222 2688999999999888888788774
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.53 E-value=3.8 Score=44.56 Aligned_cols=191 Identities=10% Similarity=0.124 Sum_probs=97.3
Q ss_pred CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCce--
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA-- 804 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~-- 804 (945)
..+.+-+.||.+.+++-....- ...++. ---..-+.|.+.-..+++++++..+.-|....-.....+..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f-----~~~lp~----~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAF-----SRFLPD----FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEE-----EEEcCC----CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 4567788899999998654221 111221 11123467888888899999998888887643211111000
Q ss_pred --------eeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCee
Q 002264 805 --------TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876 (945)
Q Consensus 805 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~ 876 (945)
.......-|...-|+. .-.|..+.++.....+++-+..++.+.+. +|......+ .+....
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~----------~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~kr-Ld~~p~ 284 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQ----------ALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKR-LDYNPS 284 (418)
T ss_pred ccccccccccccccceeEEECCce----------eEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEe-cCCcee
Confidence 0000111233332221 11233344444444555556667777775 455544433 222222
Q ss_pred EEE-e------ecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEE---ecCCcceeeeecCCceEEE
Q 002264 877 FLA-F------HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA---FSTSLNILVSSGADAQVTL 941 (945)
Q Consensus 877 ~l~-~------s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~---~s~dg~~l~s~~~Dg~i~v 941 (945)
|+. | .+..+..+++++.++++.||.=.+ ++..-+....+| ++. |..-...+++-+.+|.+.+
T Consensus 285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred eEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEE
Confidence 222 1 121123588899999999997433 333222222222 232 2223456777788887765
No 411
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.44 E-value=3.4 Score=41.77 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=130.7
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCC------CccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAI------GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~------~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
-+.++++|.+.+.++....+...+||... ...+.-.+............+.+.|+....+.++..+.
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------- 97 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------- 97 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-------
Confidence 47899999998888888888999999862 11222222211111112234455555444433321110
Q ss_pred cCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC--CCeEEEee
Q 002264 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALG 783 (945)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~ 783 (945)
.....++-++.||+|.-|...-.........+.+.. .....-...+++... +.+|.++.
T Consensus 98 ------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 98 ------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred ------------------ccceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEec
Confidence 011234677888999999853211100011112211 001223345666543 55565554
Q ss_pred -ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC
Q 002264 784 -SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (945)
Q Consensus 784 -~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~ 861 (945)
.+++|.++|-.-......+......- ..+..-.. +...+..-.|+-..-.++++.=+.+. -|.|-+||+.
T Consensus 159 F~~g~IDVFd~~f~~~~~~g~F~DP~i------PagyAPFn-Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~- 230 (336)
T TIGR03118 159 FRQGRIDVFKGSFRPPPLPGSFIDPAL------PAGYAPFN-VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN- 230 (336)
T ss_pred cCCCceEEecCccccccCCCCccCCCC------CCCCCCcc-eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-
Confidence 37888888743322111111110000 00000000 00000000111111122222212222 4679999975
Q ss_pred ceEEEEec--CCCCCeeEEEeec-----CCCceEEEeecCceEEEEecccceEEEEecCCC------cceeEEEecC
Q 002264 862 FKVMTTFM--SPPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ------KRITGLAFST 925 (945)
Q Consensus 862 ~~~~~~~~--~h~~~i~~l~~s~-----~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~------~~V~~l~~s~ 925 (945)
+..++++. +.-...+.|+..| -.+.+|+--..||+|..+|..+|+.+..+.... ...+.|+|-.
T Consensus 231 G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 67777774 2333456676654 256788888899999999999999888887644 3467888865
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.40 E-value=5.5 Score=43.98 Aligned_cols=153 Identities=9% Similarity=0.021 Sum_probs=87.1
Q ss_pred ccEEEEEEecCCCeeEEEEEe--CCCcEEEEeCCCceEEEecCCCCCEEEEEeeecC--CccEEEEEEcCCeEEEEEccC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCG--DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+|..++|. ||+. .++|.- .+|.+++=| .+.+ |.-..|..++|.|-. +...+++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd--s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD--SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC--ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899997 6764 444432 223332222 1122 333458889998742 223566777888999998752
Q ss_pred C-----CeeEEecCC---CC--eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 528 M-----GSRVDYDAP---GH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 528 ~-----~~~~~~~~~---~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
. +.......+ .- --..+.|+|....|++-+. ...-.+++++......+..-...+.|.|.+|.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 2 111111111 00 1245679999888887764 22334555554332222222334479999999999
Q ss_pred CEEEEEE-CCCcEEEEECCC
Q 002264 598 NHFLAVG-EDSQIKFWDMDN 616 (945)
Q Consensus 598 ~~l~~~~-~dg~i~iwd~~~ 616 (945)
+.|+++- ..=.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 8887754 334567888543
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.39 E-value=3.3 Score=42.21 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=84.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+...++|++|+.+.++...++.-.||-...+.... ..+.+ ..+...+|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------~~~~g--~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------PVLTG--GSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------eeccC--CccccccccCCCCEEEEEc
Confidence 789999999999755555333433444433333221 11222 3788889999988877777
Q ss_pred CCCcEEEEE-ccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEe----CCCc------eEEEecCC
Q 002264 426 TKHLIQLYS-YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWE----LSGR------KLFNFEGH 493 (945)
Q Consensus 426 ~dg~i~vwd-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd----~~~~------~~~~~~~~ 493 (945)
.+...+++. ..++...........-.+.|.++++||||.++.++.- ..++.|.+=- ..+. ........
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666677774 2333322111111112228999999999996444442 2345565543 2331 11222233
Q ss_pred CCCEEEEEeeecCCccEEEEEEcC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAID 517 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d 517 (945)
...+..+.|.. ++.+++.+...
T Consensus 165 ~~~v~~v~W~~--~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSD--DSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecC--CCEEEEEeCCC
Confidence 46788999876 44555555443
No 414
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.36 E-value=4.7 Score=42.94 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=106.7
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeee--cCCccE--EEEEE-cC---CeEEEEEccCCC-eeEEecCC
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTA-ID---GKIKAWLYDTMG-SRVDYDAP 537 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd~~~~~-~~~~~~~~ 537 (945)
+++...+++-+.+||+.|+.+..+.. +.++.+.+.. .-+|+. |+.++ .+ .+|++|.++... ....+...
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 67777888899999999999988852 3444443321 112222 33443 22 479999886432 22222211
Q ss_pred -------CCeEEEEEE--cC-CCCEEEEEeecCCCCceEEEEeCC---CC----ceeeEeccccCcceEEEEEcCCCCEE
Q 002264 538 -------GHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (945)
Q Consensus 538 -------~~~i~~~~~--s~-~~~~l~~~~~~~d~~~~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 600 (945)
...+..+|+ ++ +|.+.+.... ++|.+..|.+. .+ +.++.|.... .+..+........|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 123556665 33 4665555443 36777777654 33 4567776543 57788888888999
Q ss_pred EEEECCCcEEEEECCC-----CeeEEEeecCCCCCCccEEEEcC--CC-CEEE-EEECCCcEEEEECCCC
Q 002264 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EG-NLLA-VTTADNGFKILANAIG 661 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~sp--~g-~~l~-~~~~dg~i~iw~~~~~ 661 (945)
+.+-++--|+-|+.+. +..+.......-...|-.+++-. +| .+|+ +.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888888762 22333333333334677777743 33 2444 4444778999998754
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.34 E-value=4.1 Score=48.38 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=93.3
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE-------------EEEeeecCCccEEEEEEc----------CCeEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKA 522 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~i 522 (945)
.++.++.|+.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 566788899999999 89998876642 11110 000001001235566642 688999
Q ss_pred EEccCCCeeEEecCC---------CC--------eE-EEEEEcCCCCEEEEEee--------------cCCCCceEEEEe
Q 002264 523 WLYDTMGSRVDYDAP---------GH--------WC-TTMLYSADGSRLFSCGT--------------SKDGDSFLVEWN 570 (945)
Q Consensus 523 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~~~~~l~~~~~--------------~~d~~~~i~iwd 570 (945)
+|.++++....+... .+ .+ ..+++.++...++.... ++.-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999988766431 00 01 23455555555544321 011235677788
Q ss_pred CCCCceeeEecc-ccCc-------ceEEEEEcC-CCC---EEEEEECCCcEEEEECCCCeeEEEee
Q 002264 571 ESEGTIKRTYAG-FRKK-------SNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 571 ~~~~~~~~~~~~-~~~~-------~~~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
.++|+..-.++. |++. ...-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 889988877765 2210 011122322 442 78888899999999999998877654
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.31 E-value=2.1 Score=41.12 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=62.1
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEcc--CCC-----eeEEecC----CCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMG-----SRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
-+.++|..+. -.+.+.-+.+-.|.-||.+ ++. .+..+.. .....-.+++..+|...+++-. .++
T Consensus 160 sNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGT 234 (310)
T ss_pred CccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcE
Confidence 3556776432 2455566777788888843 322 2222221 1111234555667777776654 789
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCC-CCEEEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-QNHFLAV 603 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 603 (945)
|...|..+|+.+.++.-... .+++++|... -..+++.
T Consensus 235 V~~~dp~tGK~L~eiklPt~-qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLPTP-QITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEECCCCCcEEEEEEcCCC-ceEEEEecCCCccEEEEE
Confidence 99999999999999887765 7888888643 2344443
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.28 E-value=0.061 Score=51.18 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=59.9
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE-EEEcCCCCEEEEEECCCcEEEEEccCC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-i~~s~~g~~las~~~dg~i~vwd~~~~ 438 (945)
+++|+.+|.|.+|++....... .....-...|.+ |.--.++.+..+++.||.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~------------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHS------------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHH------------------HhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 7889999999999986322211 011112223333 333345668889999999999999877
Q ss_pred cccccceeecccc-ccEEEEEEecCCCeeEEEEE--eCCCcEEEEe
Q 002264 439 NDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE 481 (945)
Q Consensus 439 ~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd 481 (945)
+.+. ....|. .++.....+..+. .++.+ |.|..++.|+
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWN 175 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcc
Confidence 6554 333455 4555555554455 44444 5566666666
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.16 E-value=4 Score=40.92 Aligned_cols=185 Identities=8% Similarity=0.035 Sum_probs=112.7
Q ss_pred CccEEEEEEcCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
..-...+.|..+|.++-+.+.-| .|+.+|+.+|+..+.. .+.. .---..++.. ++. +..-.=.++...+|| .
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~--~d~-l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL--GDK-LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE--TTE-EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE--CCE-EEEEEecCCeEEEEccc
Confidence 34455788878888888887766 6999999998765432 2221 1122334443 232 333344688899999 6
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CC---eEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GH---WCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~i~~~~~s~~~~~l~~~~ 557 (945)
+-+.+.++.- .+.=+.++. +++.|+.......+..+|..+.+....+... +. .++.+.|- +|. +.+.-
T Consensus 119 tl~~~~~~~y-~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANV 191 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANV 191 (264)
T ss_dssp TTEEEEEEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEE
T ss_pred cceEEEEEec-CCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEe
Confidence 7777777753 345667762 4566777777888999998877766654433 22 45666665 454 44433
Q ss_pred ecCCCCceEEEEeCCCCceeeEecc-----------c---cCcceEEEEEcCCCCEEEEEEC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAG-----------F---RKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
. ....|...|..+|+....+.. . .....+.+++.|..+.|++.|.
T Consensus 192 W---~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 W---QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp T---TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 3 366788999999998776531 0 1236888999998888777764
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=2.6 Score=42.25 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
...+.+++|+|+.+.|++... ...-.++=..+|+.++++.-..-.....+.+..++.++++--.++.++++.+...
T Consensus 85 ~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345899999999999999874 4444555556788888776443334556778777766666667889999887765
Q ss_pred eeEEEe-----ec--CCC-CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 618 NILTST-----DA--EGG-LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 618 ~~~~~~-----~~--~~~-~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..+ .. ..+ ....-.++|+|..+.|..+-+-.-+.|+....+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 322211 11 111 235678999999888888888888888877643
No 420
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.99 E-value=7.1 Score=42.92 Aligned_cols=311 Identities=13% Similarity=0.063 Sum_probs=149.9
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
-...|.++.|...|. +-.|+.||- ..||..+++.+.... .....+|..+.-+-.|+ |-
T Consensus 163 ~d~~V~aLv~D~~g~--lWvgT~dGL-~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGR--LWVGTPDGL-SYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCc--EEEecCCcc-eEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EE
Confidence 455899999999996 566777764 567877776653210 01124566666555555 45
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCC--CCCEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGH--EAPVYS 499 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~--~~~v~~ 499 (945)
+|+.+| |.+.+..+..... . -..-..+.|..+.-..+|. +-.|+..|..+.=-...... ...+.| -+.|.+
T Consensus 221 VGTdqG-v~~~e~~G~~~sn-~-~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vns 294 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASN-W-GPMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNS 294 (671)
T ss_pred EEeccc-eEEEchhhccccc-c-CCCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCccccccc
Confidence 566666 7777766521111 0 0011233444444444444 44455454332211222211 111222 223444
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
+.. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+-.++..+
T Consensus 295 L~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~v 367 (671)
T COG3292 295 LWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGELV 367 (671)
T ss_pred eee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcEE
Confidence 433 3343 366677776665433211111111111111111122222 111111111 1334555555667666
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
+.........++.+++..+ ..+-.|+...-+..|+..+ +......... ..++|..+.=.|+++ |..|+.+|.++.
T Consensus 368 ~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~- 443 (671)
T COG3292 368 RSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR- 443 (671)
T ss_pred EEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec-
Confidence 6655555556776777764 4566666554455566655 3333333222 234788888889888 778888876654
Q ss_pred ECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
+.+.+ +....+.........+.+..+.+.|+|+.-+
T Consensus 444 ~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 444 DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred Ccccc-chhcccccccCcCCcchhhhhccCCCCceEE
Confidence 33322 2222222111111223366777888887654
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.82 E-value=8.1 Score=42.77 Aligned_cols=115 Identities=8% Similarity=0.027 Sum_probs=69.0
Q ss_pred CeEEEEEEcCC----C-CEEEEEeecCCCCceEEEEeCC-----CCceeeEeccccCcc----eEEEEEcCCCCEEEEEE
Q 002264 539 HWCTTMLYSAD----G-SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 539 ~~i~~~~~s~~----~-~~l~~~~~~~d~~~~i~iwd~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 604 (945)
..|..+.|.|- . .+|++-. ...|.+|.+. .++.+..-..+-... ...+.|+|....|++-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 46889999985 3 3444443 7889999875 223332222211111 23467999988887766
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-CcEEEEECC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANA 659 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-g~i~iw~~~ 659 (945)
....-.++++......-..+.. ..+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5544445565543332223322 23479999999999988776433 345788764
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.68 E-value=5.3 Score=40.03 Aligned_cols=185 Identities=16% Similarity=0.057 Sum_probs=112.1
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCC--cEEEEe-CCCceEEEecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.-...+.|..+|. ++-|.|.-| .|+.+| .+|+.+....-. .-.--.++.. ++++..-.=.++...+||.++
T Consensus 45 aFTQGL~~~~~g~--LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 45 AFTQGLEFLDDGT--LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp -EEEEEEEEETTE--EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEESSSSEEEEEETTT
T ss_pred ccCccEEecCCCE--EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEecCCeEEEEcccc
Confidence 3466788877887 777777766 788999 788766544321 2222334432 224555566788999999998
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 603 (945)
.+....+.... .-..++ .|++.|+..- |...|+.+|..+.+..+.+....+ ..++-+.+- +|...+=.
T Consensus 120 l~~~~~~~y~~-EGWGLt--~dg~~Li~SD----GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 120 LKKIGTFPYPG-EGWGLT--SDGKRLIMSD----GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp TEEEEEEE-SS-S--EEE--ECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred ceEEEEEecCC-cceEEE--cCCCEEEEEC----CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 88877776653 334455 5666666542 578999999998887776654322 124445554 34333333
Q ss_pred ECCCcEEEEECCCCeeEEEeecC---------C----CCCCccEEEEcCCCCEEEEEEC
Q 002264 604 GEDSQIKFWDMDNVNILTSTDAE---------G----GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~---------~----~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
=....|...|..+|+....+... . ...-.+.+|+.|....+.+.+.
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 46677888899999988876431 0 1234789999997666655553
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.59 E-value=5.9 Score=40.14 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=117.3
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCC-----Cc---eEEEecC-----CCCCEEEEEeeecCC----------cc
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GR---KLFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~-----~~---~~~~~~~-----~~~~v~~~~~~~~~~----------~~ 509 (945)
.-+.|+++|.+. +-++...-+...+||.. +. .+..+.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999988 77777778899999933 21 2333331 123566676653221 12
Q ss_pred EEEEEEcCCeEEEEEccCCCe-----eEEecCC--CCeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCCceee--
Q 002264 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP--GHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIKR-- 578 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~-- 578 (945)
.++.+++||+|.-|....... ...+... ......+++.. .+.+|+.+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 467889999999997433222 1222211 22334455543 4667776654 47889999854332210
Q ss_pred Eecccc---C-cceEEEEE-----------cCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC----
Q 002264 579 TYAGFR---K-KSNGVVQF-----------DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (945)
Q Consensus 579 ~~~~~~---~-~~~~~~~~-----------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---- 639 (945)
.|.... . .+.....+ .++...=+.|..-|.|-+||+ .|..++.+...+.-..-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0 00111111 111112222334578999997 577777776555445567788766
Q ss_pred --CCCEEEEEECCCcEEEEECCCCc
Q 002264 640 --EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 640 --~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
.|.+|+---.||+|..||..++.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 46777777779999999998884
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.56 E-value=0.96 Score=51.44 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=74.4
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEc-----
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY----- 525 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~----- 525 (945)
.+.-+.-|.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++|+.+++.|..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344454555555 333444456799999 5555332211 3578899999999999999999999999999842
Q ss_pred cCCC----eeEE--ecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 526 DTMG----SRVD--YDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 526 ~~~~----~~~~--~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.... .+.. +.. ..++|....|.++|..++.+ .+.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECCC
Confidence 1111 1111 222 34688999999999887766 4578888743
No 425
>PHA03098 kelch-like protein; Provisional
Probab=94.47 E-value=2.1 Score=49.60 Aligned_cols=151 Identities=9% Similarity=0.007 Sum_probs=70.5
Q ss_pred CccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCCe-EEEEEEcCCCCEEEEEeecCCC--CceEEEEeCCCCceee
Q 002264 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKR 578 (945)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~~~~~~~~ 578 (945)
++.+++.||.+ ..+..||..+..-...-..+... -.+++ .-+++..+.+|....+ -..+..||+.+.+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 44677777765 24667776654322211111111 11122 2355666666532211 2568899988765433
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.-..... .....+...++..++.||.+ ..+.+||..+++-...-...........+.+ ++++++.|+.+
T Consensus 421 ~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 421 GSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred cCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 2211111 11111222345566666532 2388889887654432211111001112222 66777777654
Q ss_pred -----CcEEEEECCCC
Q 002264 651 -----NGFKILANAIG 661 (945)
Q Consensus 651 -----g~i~iw~~~~~ 661 (945)
..+.++|..+.
T Consensus 498 ~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 498 YEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceeEEEeCCCC
Confidence 35667776654
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.32 E-value=9.2 Score=45.09 Aligned_cols=98 Identities=7% Similarity=0.121 Sum_probs=58.8
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
.-.|..|.+||+|++||..|..| |.|..+... ......+.+-...|.|=.+.-+.. ++ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~--~~-~--------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER--FF-T--------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh--hc-c---------------
Confidence 45799999999999999998876 555544321 000001222333343333332222 11 1
Q ss_pred eEEEecCCCCCEEEEEeeecC-CccEEEEEEcCCeEEEEEccCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMG 529 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 529 (945)
..+...|..+.|+|.. ++..|+.-..|+++|+||+....
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1234567788888864 35678888889999999986543
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=6.1 Score=41.97 Aligned_cols=117 Identities=11% Similarity=0.199 Sum_probs=78.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
...++|.++.||+|.+ +||+--.|.+|.+.+....+...... ...+..+..|....|+.+ .-+
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~ 126 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEI 126 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeE
Confidence 3667999999999999 79999899999999985443321100 112224456889999876 666
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
|.-...| +-+|.+...+ +.....+.|+..|.-..|+++..-.+++|+-..+++.
T Consensus 127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 6666655 7788765432 2222455788899999999998853344443444433
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=8.7 Score=43.74 Aligned_cols=177 Identities=9% Similarity=0.076 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce-eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
.+..+.||.+..+|+ ...+|++++|++.. +.+.... -.......|..+.|..+|= .+. ..+|.+.+-+ ....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV--avl--t~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV--AVL--TVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecch-hhhcccccccccccCceeEEEEecCce--EEE--ecCCcEEEEcCCCcc
Confidence 788999997766554 56899999999864 3232210 1122334566677766653 333 3355665555 3332
Q ss_pred eEEEecCC-CCCEEEEEeeecCC---ccEEEEEE-cCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 486 KLFNFEGH-EAPVYSICPHHKEN---IQFIFSTA-IDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 486 ~~~~~~~~-~~~v~~~~~~~~~~---~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.+.++..- .....+.+|.-..+ ...++-.. ..+ ..++...... ....+......+..++.||+.++|+--..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 33333321 11111122221111 11111111 000 0111111111 11122333456888999999999988775
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
.|.|.+-+....+....+..........++|..
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 788888887776666665533322222344543
No 429
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.06 E-value=17 Score=43.25 Aligned_cols=100 Identities=12% Similarity=0.222 Sum_probs=59.3
Q ss_pred eecCCCceEEecCCCeEEEEeccCceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEE--EecccceEEEEecC
Q 002264 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHI--YNVRVDEVKSKLKG 913 (945)
Q Consensus 838 ~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~v--wd~~~~~~~~~l~~ 913 (945)
|+.|-..++.+|-...+++||+...++++..+- -...|+.+++- +..+++|...-+|.. |+-+..+ +..+-+
T Consensus 940 Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~-l~~fad 1015 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQ-LIVFAD 1015 (1205)
T ss_pred EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCe-EEEEeC
Confidence 445766677777788899999987777665442 24557888774 456777776666655 4433333 333322
Q ss_pred --CCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 914 --HQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 914 --h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
-...|+++.+- |-..++.+..=|.+.+-
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEE
Confidence 22346666555 33456655555554443
No 430
>PHA03098 kelch-like protein; Provisional
Probab=94.01 E-value=2.7 Score=48.66 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=88.2
Q ss_pred CCCCEEEEEECCC------cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CC
Q 002264 416 PDGNYVGVAFTKH------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (945)
Q Consensus 416 ~~g~~las~~~dg------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~ 483 (945)
.++..++.||.++ .+..||..+++-.. ...+.........+.+ ++. +++.||.+ ..+..|| .+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3566667776542 47788877654322 1122211222222222 455 66667765 3466788 44
Q ss_pred CceEEEecCCCCCE--EEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 484 GRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 484 ~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++- ........+. .+++. . ++.+.+.||.+ ..+..||..+..-...-..+.......+...+++..+.
T Consensus 368 ~~W-~~~~~lp~~r~~~~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKW-REEPPLIFPRYNPCVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred Cce-eeCCCcCcCCccceEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 332 2221111111 11121 1 44677777632 35778887654322211111111111122235555566
Q ss_pred EeecCCC----CceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCee
Q 002264 556 CGTSKDG----DSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNI 619 (945)
Q Consensus 556 ~~~~~d~----~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (945)
+|..... -..+.+||..+.+....-.... ......+.+ ++..++.||.+ +.+.+||..+..-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6542111 1248899988765443211111 101122222 56666666643 4678888776654
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.88 E-value=5.7 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=27.2
Q ss_pred CccEEEEcCC---CCEEEEEECCCcEEEEECCCCcccc
Q 002264 631 NLPRLRFSKE---GNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 631 ~v~~v~~sp~---g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
.|..+.|+|. +..|++-..|+++|+||+.......
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCe
Confidence 5778888884 5788888899999999997654333
No 432
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.74 E-value=8.5 Score=38.79 Aligned_cols=170 Identities=10% Similarity=0.080 Sum_probs=99.9
Q ss_pred eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 447 ~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
+.+-...+.++.|+|+.+ .|++......-.||= .+|+.+.++.-. -...-.|.+. ++|++.++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEEEE
Confidence 335555699999999999 455555555555666 999988776421 1122334443 3567888877888888887
Q ss_pred ccCCCeeEEecC---------C-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--e-eeEeccccC------
Q 002264 525 YDTMGSRVDYDA---------P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--I-KRTYAGFRK------ 585 (945)
Q Consensus 525 ~~~~~~~~~~~~---------~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~-~~~~~~~~~------ 585 (945)
++.......... + ......++|.|....|+.+-. ..-+.+|...... . ......+..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE----r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE----RNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc----cCCcEEEEEecCCcccccccccCcccccceEe
Confidence 766543332111 1 335778999999988888753 3445555443221 1 111111111
Q ss_pred cceEEEEEcCCCCE-EEEEECCCcEEEEECCCCeeEEEeec
Q 002264 586 KSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 586 ~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
..+..+.|++..+. ++.+.+++.+.-.|... ..+..+..
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL 272 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSL 272 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEe
Confidence 13566778775544 44455777777777654 43554443
No 433
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.46 E-value=2.2 Score=44.98 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=84.1
Q ss_pred CccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCcee-EEeecC
Q 002264 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSK 841 (945)
Q Consensus 763 ~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~l~~s~ 841 (945)
-...+..+-..|||+.+...+. .++.++++........+ +-+..-|.. ...|+ ++..-.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk---------l~~dspg~~----------~~~Vte~l~lL~ 278 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK---------LVDDSPGDS----------RHQVTEQLYLLS 278 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh---------hhhcCCCch----------HHHHHHHHHHHh
Confidence 3456788899999998877666 67888887654322110 111111110 01111 111122
Q ss_pred CCceEEecC-CCeEEEE-eccCc-----eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCC
Q 002264 842 NDSYVMSAT-GGKISLF-NMMTF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 842 dg~~la~~s-d~~i~iw-d~~~~-----~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 914 (945)
.|.-+.+++ ||-|.-| |+..+ ..++.++-...++..+.--. +.+-+++-+.+|++.++.....+.+-.-. -
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~ 356 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-A 356 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-h
Confidence 344444444 7776655 43321 12223332223444444333 45567777788888877644433322211 1
Q ss_pred CcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
-..+.-+++||.+.+|++-.. |.++++.+
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~~-gki~~~~l 385 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSEDQ-GKIRLAQL 385 (733)
T ss_pred hcCcceeeeCcccchheeecC-CceEEEEe
Confidence 235667899999999996543 45777665
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=8.2 Score=43.96 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=100.9
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe----cCCCCCEEEEEe
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAPVYSICP 502 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~~~~~v~~~~~ 502 (945)
--.|+|++..+ ..+. .+.-..+.+..+.|+.+.. |+....||++.+|+..|..+... ......|..+.+
T Consensus 63 ~~~I~If~~sG-~lL~---~~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNISG-QLLG---RILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEeccc-cchH---HHHhcCCCeeeecccCCce---EEEEeccceEEEeecchhhhcccccccccccCceeEEEE
Confidence 34588998764 4443 2222334788999998775 67778899999999766655442 112233444444
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeE--EEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCc-
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWC--TTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i--~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~- 575 (945)
.. +| ++.-..+|.+.+-+-........+.. +.... .+-+..++++ .++-... .-...++......
T Consensus 136 f~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~----~v~~~~~q~~~~~~ 207 (829)
T KOG2280|consen 136 FH--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV----AVGLHICQVEESRV 207 (829)
T ss_pred ec--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech----hhhhcccceecccc
Confidence 33 33 44444555554432111111111111 11111 2222222221 1111100 0000111111111
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
....+.... ..+..+.+||+.++|+.-..+|.|.+-+.+..+....+....+. +-..++|..+
T Consensus 208 q~~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 208 QLHALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred cccccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 111111111 24667889999999999999999999998888877777654432 2235666543
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=1.7 Score=51.34 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=64.5
Q ss_pred ceeEEeecCCCc--eEEecCCCeEEEEeccCceE-EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEE
Q 002264 833 AVPCIALSKNDS--YVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (945)
Q Consensus 833 ~i~~l~~s~dg~--~la~~sd~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~ 909 (945)
...++.|.|.-. .+++-.|+.|+|.-+.-... +..+. .....+|++|+| .|+.+++|...|++.-|... ++...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345566666432 33333488888887653222 22222 455689999999 99999999999999888743 44333
Q ss_pred EecC----CCcceeEEEecCCcceeee
Q 002264 910 KLKG----HQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 910 ~l~~----h~~~V~~l~~s~dg~~l~s 932 (945)
.+.+ ....|.+|+|...-.+|++
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEE
Confidence 3322 2468999999977777765
No 436
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.00 E-value=28 Score=42.50 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=17.0
Q ss_pred CccceEEEEEecCCCeEEEeeec
Q 002264 763 TSSKVVRLLYTNSAVGLLALGSN 785 (945)
Q Consensus 763 ~~~~v~~l~~s~dg~~l~~~~~d 785 (945)
+-..+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 56678899999999866654333
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=92.95 E-value=15 Score=39.27 Aligned_cols=278 Identities=10% Similarity=0.048 Sum_probs=132.2
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
...+.+|+|..... .+|+|. +|. ||...+ |+.-.. ... .+......+.++.|.++ ..++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G~--il~T~DgG~tW~~--------~~~-------~~~~~~~~l~~v~~~~~-~~~~ 104 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NRT--LLETNDGGETWEE--------RSL-------DLPEENFRLISISFKGD-EGWI 104 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CCE--EEEEcCCCCCceE--------Ccc-------CCcccccceeeeEEcCC-cEEE
Confidence 45889999986655 477775 453 454433 332211 000 01112234778888654 3444
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~ 501 (945)
+| ..|.|.. .-+.|+.-.....-....+....+.....+. .++. +..|.|..=+..|+.-..+. .-...+.++.
T Consensus 105 ~G-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 105 VG-QPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred eC-CCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEE
Confidence 43 4553322 3344444332211000111122222222232 2333 33454433223343322222 2245677787
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeE--EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
+.+ ++.++ ..+..|.+..- .+.+.... ........++++.+.++++.++++. .+.+++=....+..-..
T Consensus 180 ~~~--~g~~v-~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSP--DGKYV-AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECC--CCeEE-EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 755 44444 55556655421 12222211 1223345788999999998877654 45554322333332221
Q ss_pred eccc---cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-CCCCCCccEEEEcCCCCEEEEEECCCcEEE
Q 002264 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (945)
Q Consensus 580 ~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~l~~~~~dg~i~i 655 (945)
.... ....+..+.+.+++. +++++.+|.+. ...+.++.-..... ..-......+.|..+++.++ .+..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence 1111 122466788888765 55566677665 34555554444432 11112467777776666655 456777776
Q ss_pred EEC
Q 002264 656 LAN 658 (945)
Q Consensus 656 w~~ 658 (945)
++-
T Consensus 328 ~~~ 330 (334)
T PRK13684 328 YVG 330 (334)
T ss_pred ecC
Confidence 653
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.67 E-value=1.2 Score=50.78 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=75.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc--CCCCEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVGV 423 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~g~~las 423 (945)
.++-+.-|.-++ +.++.+...++.|||...+....+. .+ ...+.|.++.|. |+|+.+++
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~-----------------~f-~~~~~I~dLDWtst~d~qsiLa 91 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEE-----------------SF-SEDDPIRDLDWTSTPDGQSILA 91 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEee-----------------ee-cCCCceeeceeeecCCCCEEEE
Confidence 455555566666 4555555568999999887755431 12 356789999996 48888888
Q ss_pred EECCCcEEEEEcc------CC---cccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 424 AFTKHLIQLYSYA------GS---NDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 424 ~~~dg~i~vwd~~------~~---~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
.|..+.|.+|.-. .+ ..++.+ .+..|+ .+|.+..|.++|. ++.|+ ++.+.|+|
T Consensus 92 VGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~---LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 92 VGFPHHVLLYTQLRYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGT---LVVGS-GNQLFVFD 154 (631)
T ss_pred EEcCcEEEEEEccchhhhcCCcccceeEEE-EeecCCCCCccceeEecCCe---EEEEe-CCEEEEEC
Confidence 8899999998531 11 112222 234455 6899999999997 44444 56788888
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.63 E-value=0.26 Score=56.15 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=80.2
Q ss_pred CCCcEEEEEEe----CCCCeEEEEEeCcCcEEEEEcC--CCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 343 QGSTVISMDFH----PSHQTLLLVGSSNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 343 h~~~V~~v~fs----p~g~~llasgs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
..++|-.++|- |.+. -.-|...||++. .|+......+ +....-...+.-|.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v--------------~~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEV--------------TPITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEE--------------eecCcCCCCcceeeecc
Confidence 45567777774 3333 123677889875 3443322111 11222233445566665
Q ss_pred ---CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEE-----------EecCCCeeEEEEEeCCCcEEEEe-
Q 002264 417 ---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA-----------FAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 417 ---~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
+..++..+-.++.|++.+++.... ..+.+|...+..++ .||||. .|+.+..||.++.|-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 667888888899999988876432 13556887777665 489999 899999999999887
Q ss_pred -CCCc----eEEEecCCC
Q 002264 482 -LSGR----KLFNFEGHE 494 (945)
Q Consensus 482 -~~~~----~~~~~~~~~ 494 (945)
..|+ +++.++.|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 5664 455666676
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.28 E-value=3.1 Score=45.23 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=55.7
Q ss_pred CcEEEEEEeCCCCeEEEEEe-----------CcC-cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
.....|+|.++|+ |+++-. ..+ .|.+++-.++.-... +..++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 3678899999998 555432 223 677776543321110 001232233456789
Q ss_pred EEcCCCCEEEEEECCCcEEEE-EccCCc----ccccc-eeecc----ccccEEEEEEecCCCeeEEEEE
Q 002264 413 AWSPDGNYVGVAFTKHLIQLY-SYAGSN----DLRQH-SQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vw-d~~~~~----~~~~~-~~~~~----h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
++.++| .++ ++... |..| +.+... ..+.+ ..+.. +......++|.|||.. ++..+
T Consensus 78 ~~~~~G-lyV-~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EEecc
Confidence 999999 444 44443 4433 443211 11111 11221 2345778999999972 44444
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.10 E-value=12 Score=43.41 Aligned_cols=165 Identities=11% Similarity=0.130 Sum_probs=94.6
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCccccc-ccccccccccCccccccccc--CCCccEEEEEEcC--CCCEEEEEECCCcE
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSK-PFKIWDMAACSLPFQASIFK--DVPISVSRVAWSP--DGNYVGVAFTKHLI 430 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~h~~~V~~i~~s~--~g~~las~~~dg~i 430 (945)
+. +|+++. .+.|.||+...-...... +.-................. .-...|+.|.... +...|+.|..||.|
T Consensus 49 ~n-~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RN-LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CC-EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeE
Confidence 44 566654 789999998654442210 01000111000000000010 0223566666655 56689999999999
Q ss_pred EEEEccC-------C----------cccccceeeccccccEEEEEEe--cCCCeeEEEEEeCCCcEEEEe--CC-CceE-
Q 002264 431 QLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGDDKLIKVWE--LS-GRKL- 487 (945)
Q Consensus 431 ~vwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~s--~~~~~~~l~s~s~d~~i~vwd--~~-~~~~- 487 (945)
.+|.+++ . ..+++...+. -...++++++. .... ++|.++....|.||- .. .+..
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--lIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--LIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--EEEEecCCceEEEEEEecccccccc
Confidence 9997631 0 0111222222 34578999998 5555 788888888888887 32 2211
Q ss_pred EEecCCCCCEEEEEeeecCC---cc-EEEEEEcCCeEEEEEc
Q 002264 488 FNFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~ 525 (945)
..-..+...|.+|+|.+... |. .+++++-.|.+.+|++
T Consensus 204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11113566788999877542 22 7888999999998887
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.09 E-value=0.48 Score=32.04 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.3
Q ss_pred CcEEEEEEeCCCC--eEEEEEeCcCcEEEEEcCC
Q 002264 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAM 376 (945)
Q Consensus 345 ~~V~~v~fsp~g~--~llasgs~dg~i~iwd~~~ 376 (945)
+.|.+|+|||... -||+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999997543 4788888789999999985
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=91.82 E-value=9.1 Score=43.37 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=69.1
Q ss_pred CccEEEEEEcC--CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 507 NIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
++.+.+.||.+ ..+..||..+..-...-..+..........-+|+..+.||.+. ....+..||..+.+....-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCC
Confidence 45677777754 3577787654322221111111111112223566666666422 23567789988765443211111
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANA 659 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~ 659 (945)
. .....+..-++...+.| |.+.+||..+++-...-......... +++ --+|+..++||.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence 1 11111222334444444 35778888776544332222111112 222 2267777888754 245566665
Q ss_pred CC
Q 002264 660 IG 661 (945)
Q Consensus 660 ~~ 661 (945)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 44
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=91.63 E-value=7.3 Score=44.15 Aligned_cols=186 Identities=10% Similarity=-0.063 Sum_probs=80.3
Q ss_pred CCCEEEEEECCC-----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-CCCceEE
Q 002264 417 DGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLF 488 (945)
Q Consensus 417 ~g~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~~~~~~~ 488 (945)
++..+++||.++ .+..||..++.-.. ...+.........+ .-++. +.+.||.+ .++..|| .+++- .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~--iYviGG~~~~~sve~ydp~~n~W-~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNK--LYVVGGLPNPTSVERWFHGDAAW-V 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCE--EEEECCcCCCCceEEEECCCCeE-E
Confidence 355566676543 46778877654221 11222111112222 23555 56667653 4577888 44432 2
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.+..-..+....+...- +|.+.+.||.++ .+..||.++..-...-..........+..-+++..+.|+ .
T Consensus 345 ~~~~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG-------~ 416 (480)
T PHA02790 345 NMPSLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR-------N 416 (480)
T ss_pred ECCCCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC-------c
Confidence 22221111111111111 457777777654 466787665432221111111111111223444444432 3
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNV 617 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 617 (945)
+.+||..+.+....-.-.....-..++ .-+++..++||.+ ..+..||..++
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 677888776554322111110111122 2245666666643 23455555443
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.61 E-value=0.17 Score=57.48 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=77.8
Q ss_pred CCCcccccceeecCCcceee-ecCCCCCCccceEEEEEe---cCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccc
Q 002264 736 DKPKPWQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYT---NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 811 (945)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s---~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 811 (945)
|...+|++.-....-++... .... .....+.-+.|. ++..++..+-.++++++..+.+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~--p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPIT--PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR------------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecC--cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-------------
Confidence 67788887642211111111 1111 122233444444 4566677777788998876543221
Q ss_pred cccCCCcccccccccCCCcCCceeEEe-----------ecCCCceEEecC-CCeEEEEe-----ccCceEEEEecCCCC-
Q 002264 812 HWLPSSGLLMANDVAGVNLEEAVPCIA-----------LSKNDSYVMSAT-GGKISLFN-----MMTFKVMTTFMSPPP- 873 (945)
Q Consensus 812 ~~~~~~~~~~~~~l~~~~~~~~i~~l~-----------~s~dg~~la~~s-d~~i~iwd-----~~~~~~~~~~~~h~~- 873 (945)
..+.+ |+.+++.++ +||||+.+|.+. ||.++.|- .....++...+.|++
T Consensus 218 -----------~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 218 -----------SLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred -----------HHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 01112 333333332 689999999998 88766554 444566777788874
Q ss_pred CeeEEEeecC------CC--ceEEEee-cCceEEEEecccceEE
Q 002264 874 ASTFLAFHPQ------DN--NIIAIGT-EDSTIHIYNVRVDEVK 908 (945)
Q Consensus 874 ~i~~l~~s~~------~~--~~lasg~-~dg~v~vwd~~~~~~~ 908 (945)
+-.|.-|..+ -+ .++++++ .+..+++|.-...+|+
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3334334321 01 2333443 3456899987777666
No 446
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.05 E-value=1.4 Score=41.89 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.5
Q ss_pred ccEEEEEEcCCC------CEEEEEECCCcEEEEEccC
Q 002264 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 407 ~~V~~i~~s~~g------~~las~~~dg~i~vwd~~~ 437 (945)
..|.+++|||.| .+||+.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999953 4788889999999997653
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=4.6 Score=38.21 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=81.5
Q ss_pred CccEEEEEEcCC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
+|.++.+.+.-| .|++||+.+++...........+..=-...-|.++..-.. +++.-..+|..+.+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 446676666544 6899999988887765554222221112223444444443 47888899998888777665433
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC---CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG---LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
. -+.+ ..++..++.+.....++.-|..+......+..... ...++.+.|- ||...|-.-.+..|...+.++|
T Consensus 132 e--GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2 2333 34555677776666777777766544443322211 1223344443 4555554444445555555555
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.90 E-value=4.5 Score=43.56 Aligned_cols=136 Identities=11% Similarity=0.109 Sum_probs=83.6
Q ss_pred EEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC--------CEEEEEeecCCCCceEEEEeCCC-CceeeEecc-
Q 002264 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--------SRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAG- 582 (945)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~- 582 (945)
.|+....+.--|++.++.+-....+... -+.|.|+. ..|+..+ +..|.-.|.+- |..+.....
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCceeeeeeh
Confidence 3444555666677777777776666653 45666643 3344443 55666667653 222221111
Q ss_pred -c-cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 583 -F-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 583 -~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
. ......+. ......++++++..|.|++||.-.......+++-+. .|..+..+.+|+++++.+.. .+.+-|+.
T Consensus 558 dY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 558 DYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 1 11112222 223456999999999999999766555555555444 78999999999998877754 67777764
No 449
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.81 E-value=26 Score=37.47 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=58.1
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce---EEEe----cCCCCCEEEEEeeec--CCccEEEEEEcC------
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK---LFNF----EGHEAPVYSICPHHK--ENIQFIFSTAID------ 517 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~---~~~~----~~~~~~v~~~~~~~~--~~~~~l~s~~~d------ 517 (945)
..++|+|.|||. ++++ ...|.|++++..+.. +..+ .........++++|. .++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 367899999997 6665 559999999944443 2232 223456889999883 233333333321
Q ss_pred --CeEEEEEccCC-------CeeE-Eec---CCCCeEEEEEEcCCCCEEEEEee
Q 002264 518 --GKIKAWLYDTM-------GSRV-DYD---APGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 518 --g~i~iwd~~~~-------~~~~-~~~---~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..|.-|.+... +.+. ... ...+....+.|.|||.+.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444433 1111 112 23456778999999977777765
No 450
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.59 E-value=8 Score=42.06 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=56.8
Q ss_pred CceeEEeecCCCceEEecCCCeEE-EEeccC-------ceEEE-EecCC----CCCeeEEEeecCCCceEEEeecC----
Q 002264 832 EAVPCIALSKNDSYVMSATGGKIS-LFNMMT-------FKVMT-TFMSP----PPASTFLAFHPQDNNIIAIGTED---- 894 (945)
Q Consensus 832 ~~i~~l~~s~dg~~la~~sd~~i~-iwd~~~-------~~~~~-~~~~h----~~~i~~l~~s~~~~~~lasg~~d---- 894 (945)
.....+++.++| ++++ +...|. +.|.+. .+.+. .+... ......++|.| ||++.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence 345789999999 4444 434444 435431 11222 23221 23477899999 77665544411
Q ss_pred ---------------ceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 895 ---------------STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 895 ---------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
|.|.-++..+++. ..+.........++|+++|.++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 4456666555543 2332223446789999999988775543
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.54 E-value=0.78 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=26.9
Q ss_pred CCeeEEEeecCCC--ceEEEeecCceEEEEeccc
Q 002264 873 PASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 873 ~~i~~l~~s~~~~--~~lasg~~dg~v~vwd~~~ 904 (945)
+.|.++.|||..+ .+||.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998444 5899888889999999985
No 452
>PRK13684 Ycf48-like protein; Provisional
Probab=90.32 E-value=28 Score=37.18 Aligned_cols=267 Identities=11% Similarity=0.069 Sum_probs=125.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEc-cCCcccccce-eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSY-AGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS 483 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~-~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~ 483 (945)
...+.+|+|....+-+|+|. +|. ||.. +.|+.-+... .+......+.++.|.++ . .++. +..+.|..-...
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~--~~~~-G~~g~i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-E--GWIV-GQPSLLLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-c--EEEe-CCCceEEEECCC
Confidence 45788999986666677664 453 3333 4444333211 11112334778888643 3 3444 445544332233
Q ss_pred CceEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-e-cCCCCeEEEEEEcCCCCEEEEEee
Q 002264 484 GRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-Y-DAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 484 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|+.-..+. ........+.. ..++. +..++..|.|. ....+..... + ......+..+.+.+++.+++++.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~--~~~~~-~~~~g~~G~i~--~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~- 191 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITA--LGPGT-AEMATNVGAIY--RTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS- 191 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEE--ECCCc-ceeeeccceEE--EECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-
Confidence 33222221 01111122221 11222 23334444442 2222222221 1 12234688899999987776664
Q ss_pred cCCCCceEEEE-eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC--CCCCCccEE
Q 002264 559 SKDGDSFLVEW-NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--GGLPNLPRL 635 (945)
Q Consensus 559 ~~d~~~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v 635 (945)
.|.+..- | ..++.-..........+..+.+.++++.++++ ..|.+++=..+.+..-.....+ .....+.++
T Consensus 192 ----~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v 265 (334)
T PRK13684 192 ----RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDL 265 (334)
T ss_pred ----CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeE
Confidence 4545432 2 12222222233333467888999988766654 5676653234455433322222 111246788
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
.+.+++..++++ .+|.+. .....+ ...+...... ........+.|..+++.+++|.
T Consensus 266 ~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 266 AYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKDPVGE--EVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeECCcCC--CCCcceEEEEEeCCCceEEECC
Confidence 999987766554 566554 344444 2222221100 0112355566666665555433
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.82 E-value=0.18 Score=53.49 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=82.8
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.-++.-..++|..+|..+++.+-..+.+.+||+.+..... + ..-..|.... +.|++.+..+
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~wsKg~~el 132 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAWSKGTPEL 132 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--HhhccCCccc
Confidence 3455677888888888767777788999999997643211 0 0011233333 7899999999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.|...|.+.|++..+...+. ....|...+++++|.+.+. .+.++.|..+.+-.
T Consensus 133 ~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 133 VIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred cccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 999999999999987764433 3444999999999999885 67777777666555
No 454
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.78 E-value=28 Score=36.28 Aligned_cols=265 Identities=13% Similarity=0.117 Sum_probs=115.3
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccc---cccEEEEEEecCCCeeEEEEEeCCCcEEEEeC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH---VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~ 482 (945)
...+..|+|..+..-.|+| ..+. .+-..+.|+.-.... .... .-...++.|..+ . .+++| ..+.|..-..
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~-il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~~-~--g~ivG-~~g~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGT-ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDGN-E--GWIVG-EPGLLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTE-EEEESSTTSS-EE------S-----EEEEEEEETT-E--EEEEE-ETTEEEEESS
T ss_pred CCceEEEEEecCCEEEEEe-cCCE-EEEECCCCccccccc-cCCCccceeeEEEEEecCC-c--eEEEc-CCceEEEecC
Confidence 4589999999666666666 4453 233444554433211 1111 223667888643 3 44544 3454332224
Q ss_pred CCceEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.|+.-..+. .-.+....+.... ++ .....+..|.| |....+..... .......+..+..++||++++++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~--~~-~~~l~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALG--DG-SAELAGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEE--TT-EEEEEETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcC--CC-cEEEEcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 444333321 1223333343322 22 33334455544 33333333322 233345788888999999998876
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE-CCCCeeEEE--eecCCCCCCccE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNVNILTS--TDAEGGLPNLPR 634 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~--~~~~~~~~~v~~ 634 (945)
. ...+.-||.....-...-.. ....+..+.|.|++...+. ...|.|++=+ ....+.... .......-.+..
T Consensus 164 ~----G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld 237 (302)
T PF14870_consen 164 R----GNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILD 237 (302)
T ss_dssp T----SSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred c----ccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEE-eCCcEEEEccCCCCccccccccCCcccCceeeEE
Confidence 2 33445677543222222222 2337899999999766554 4888888877 222222222 111112224788
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
++|.+++...++|+.. .+ +.....++.-.+.... ....+.+..+.|..+.+-++
T Consensus 238 ~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~---~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 238 LAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVG---ENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGG---TTSSS---EEEEEETTEEEE
T ss_pred EEecCCCCEEEEeCCc-cE-EEeCCCCccceECccc---cCCCCceEEEEEcCCCceEE
Confidence 9999998888776644 33 3344445322222111 11223356677765544443
No 455
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.36 E-value=24 Score=37.61 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=88.6
Q ss_pred ccceEEEEEecCCCeEEEeeecCe------EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGV------QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
-+.+.++.+.+++..+++.+++|. +..+++..... ..+.......+.+-+.. |.... . ......++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Egi 90 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEGI 90 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhHe
Confidence 356788999977777888888777 55555443111 11111111111222221 22211 1 12256678
Q ss_pred eecCCCceEEecC-C------CeEEEEeccCceEEEEec---------------CCCCCeeEEEeecCCCceEEEeecC-
Q 002264 838 ALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFM---------------SPPPASTFLAFHPQDNNIIAIGTED- 894 (945)
Q Consensus 838 ~~s~dg~~la~~s-d------~~i~iwd~~~~~~~~~~~---------------~h~~~i~~l~~s~~~~~~lasg~~d- 894 (945)
++.++|.++++.- + -.|.-++.. |+....+. ......-+|+++| +|+.|.++.+.
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8878888777664 4 458888866 65544442 1233478899999 88866655432
Q ss_pred ----c--e-------EEEE--eccc-ceEE----EEecC-----CCcceeEEEecCCcceee
Q 002264 895 ----S--T-------IHIY--NVRV-DEVK----SKLKG-----HQKRITGLAFSTSLNILV 931 (945)
Q Consensus 895 ----g--~-------v~vw--d~~~-~~~~----~~l~~-----h~~~V~~l~~s~dg~~l~ 931 (945)
+ . ++++ |..+ ++.. ..+.. ....|..+.+-+++++|+
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 2 1 4554 4444 3222 22332 356788999999998776
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.36 E-value=1.5 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=23.9
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCc--CcEEEE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~d--g~i~iw 372 (945)
......-.+..|||||++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33556788999999999988888777 776666
No 457
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.04 E-value=26 Score=34.98 Aligned_cols=246 Identities=8% Similarity=-0.026 Sum_probs=131.5
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
.+.....++-.+||..-+++...|.|--.|..+|+....--..+. .-..|...|||..-++-+.. .|.-+|.++...
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga--~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA--SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCC--CCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 333456688889998888888888888889888887654433332 45788889998877664433 455556655422
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
..-.+.. +.-........|.+.|.+.+++..+-..+++-. .+.|++|..
T Consensus 137 t~f~lp~---~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa----------------------------~~~i~vfpa 185 (353)
T COG4257 137 TRFPLPL---EHADANLETAVFDPWGNLWFTGQIGAYGRLDPA----------------------------RNVISVFPA 185 (353)
T ss_pred EEeeccc---ccCCCcccceeeCCCccEEEeeccccceecCcc----------------------------cCceeeecc
Confidence 1111211 111234667789999988776544332221111 144555554
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (945)
. .......++..|||..-++.-.+..|-.. |...+.....
T Consensus 186 P------------------qG~gpyGi~atpdGsvwyaslagnaiari----------------------dp~~~~aev~ 225 (353)
T COG4257 186 P------------------QGGGPYGICATPDGSVWYASLAGNAIARI----------------------DPFAGHAEVV 225 (353)
T ss_pred C------------------CCCCCcceEECCCCcEEEEeccccceEEc----------------------ccccCCccee
Confidence 3 22344667888888866554444333322 2222211110
Q ss_pred cccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE-EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 824 ~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
..+. .....-..+-.+|.|+..++-. .+.+.-||-.+..- ...+.+....-.++.... .++.-.+-..-|.|.-+|
T Consensus 226 p~P~-~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~agai~rfd 303 (353)
T COG4257 226 PQPN-ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADAGAIGRFD 303 (353)
T ss_pred cCCC-cccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeeccccCceeecC
Confidence 0110 0112223344466777766654 56677777554321 123333334455566655 444444444445566666
Q ss_pred cccc
Q 002264 902 VRVD 905 (945)
Q Consensus 902 ~~~~ 905 (945)
-++.
T Consensus 304 peta 307 (353)
T COG4257 304 PETA 307 (353)
T ss_pred cccc
Confidence 5543
No 458
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.00 E-value=77 Score=40.35 Aligned_cols=148 Identities=12% Similarity=0.201 Sum_probs=83.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|-..++.|.-+|+|.. +=. .|+.++.||..... |.+. -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5556677777777764 322 46777777766543 2210 011234555666666666665
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC-C--Cc------eEEEecCC
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-S--GR------KLFNFEGH 493 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~-~--~~------~~~~~~~~ 493 (945)
.++. .|-|+..+.... ..-..|.+...+++|.- .+.++.....+.+|+. . +. ....+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 244555543221 12345777888999983 3666766667799982 2 11 12233333
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.....++.+++ ..|++...+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33556666643 2588888899887766543
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.84 E-value=2.8 Score=44.29 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=85.9
Q ss_pred eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE--EEecCC-CC----CEE-EEEeeecCCccEEEEEEcCC
Q 002264 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGH-EA----PVY-SICPHHKENIQFIFSTAIDG 518 (945)
Q Consensus 447 ~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~-~~----~v~-~~~~~~~~~~~~l~s~~~dg 518 (945)
+..-...|..+-..|||+.+++.+| ..+.+++...+.+ .++... .+ .|+ .+.. -..|.-++.++.||
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l--L~Gg~SLLv~~~dG 290 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL--LSGGFSLLVVHEDG 290 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH--HhCceeEEEEcCCC
Confidence 4455667888999999997666665 4677777333222 122111 11 111 1110 11456788899999
Q ss_pred eEEEE-EccCCCee-E----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEE
Q 002264 519 KIKAW-LYDTMGSR-V----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592 (945)
Q Consensus 519 ~i~iw-d~~~~~~~-~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 592 (945)
.|.-| |.+..... . .+......+..+.-..+.+-+++-.. +|++..+.....+.+-.-... . ....++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~----~G~L~~f~st~~~~lL~~~~~-~-~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYR----NGTLQSFYSTSEKLLLFERAY-Q-APQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcC----CCceeeeecccCcceehhhhh-c-Ccceee
Confidence 99887 44332221 1 12222233333332223344444442 666666654433332211111 1 355688
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 593 FDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
++|.+.++++-. .|.++++.+++..+
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCC
Confidence 999998887653 56788888776544
No 460
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.66 E-value=11 Score=43.69 Aligned_cols=110 Identities=14% Similarity=0.234 Sum_probs=71.0
Q ss_pred ceeEEeecC--CCceEEecC-CCeEEEEeccC-------c----e---------EEEEecCCCCCeeEEEee--cCCCce
Q 002264 833 AVPCIALSK--NDSYVMSAT-GGKISLFNMMT-------F----K---------VMTTFMSPPPASTFLAFH--PQDNNI 887 (945)
Q Consensus 833 ~i~~l~~s~--dg~~la~~s-d~~i~iwd~~~-------~----~---------~~~~~~~h~~~i~~l~~s--~~~~~~ 887 (945)
.|+.+.+.. +...|+.+. ||.|.+|.+++ . + +...+. .....+.++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 355555443 334666665 89999997531 1 0 111122 23468889998 6 7889
Q ss_pred EEEeecCceEEEEecccc--eE-EEEecCCCcceeEEEecCCc---c---eeeeecCCceEEEEec
Q 002264 888 IAIGTEDSTIHIYNVRVD--EV-KSKLKGHQKRITGLAFSTSL---N---ILVSSGADAQVTLCVE 944 (945)
Q Consensus 888 lasg~~dg~v~vwd~~~~--~~-~~~l~~h~~~V~~l~~s~dg---~---~l~s~~~Dg~i~vWdl 944 (945)
||+++....|.||-.... +. ...-..|...|.+|+|.++. . +|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999998888888876542 11 11111266789999998653 2 7888999999988875
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.12 E-value=20 Score=38.82 Aligned_cols=151 Identities=9% Similarity=0.078 Sum_probs=87.9
Q ss_pred EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecC------CccEEEEEEcCCeEEEEEcc
Q 002264 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYD 526 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~ 526 (945)
+..+....+...+++..|+....++--| ..|+.+..+..|...+ +.+.|.. +.+.| .|-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceE-EeecccceEEeccc
Confidence 3334444444444666777777777778 8889888888777653 3444432 12334 34445555545555
Q ss_pred CCCeeEEecCCCC-----eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEE
Q 002264 527 TMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 527 ~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
............. ...+..- ....++++++. .|-|++||--.-+....+++... .|..+..+.+|.+++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhcccccccccccc-ccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 4432222111111 2222222 23457888775 77899999655444445555544 677888999999988
Q ss_pred EEECCCcEEEEEC
Q 002264 602 AVGEDSQIKFWDM 614 (945)
Q Consensus 602 ~~~~dg~i~iwd~ 614 (945)
+.+. ..+.+-|+
T Consensus 620 aTCk-~yllL~d~ 631 (776)
T COG5167 620 ATCK-NYLLLTDV 631 (776)
T ss_pred Eeec-ceEEEEec
Confidence 8775 35666554
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.01 E-value=2.2 Score=42.19 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCceEEEeecCceEEEEecccceEEEE-------ec-------CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 884 DNNIIAIGTEDSTIHIYNVRVDEVKSK-------LK-------GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 884 ~~~~lasg~~dg~v~vwd~~~~~~~~~-------l~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.+.+|++.+.+|.+++||+.+++++.. +. .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 667899999999999999998875432 22 3557899999999998888765 467788875
No 463
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=6.2 Score=46.97 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=86.0
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce------EEEecC------CCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK------LFNFEG------HEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~------~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
+|..+...+|+....++..+.+-.|..||...-+ ..-|.. ......++.|+|... ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 5666777778775445555555578889822111 111111 122345666776543 345667788888
Q ss_pred EEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc---cCcceEEEEEcCCC
Q 002264 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF---RKKSNGVVQFDTTQ 597 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 597 (945)
++..+........--.-....++++|+|.|+.++++-. .|++.-|... .+....+.+. ....+.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88865443322222122346899999999999998863 7888887653 3333333322 22357888887766
Q ss_pred CEEEEE
Q 002264 598 NHFLAV 603 (945)
Q Consensus 598 ~~l~~~ 603 (945)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666653
No 464
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.30 E-value=50 Score=41.90 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=49.7
Q ss_pred ccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEE-EecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
+.|.. ...|+++|+-.+.++++.-..|.+.... ..+.++. ...+-.+.|..+++.. .. -|.....+|.++--+
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~-~~-nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDE-KQ-NLYALTSTGELFRLP 770 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeecc-cc-ceeEecCCCceeecC
Confidence 44433 6778999998777777666688899888 6565432 2234568899999987 54 455566788776543
No 465
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.29 E-value=39 Score=40.43 Aligned_cols=175 Identities=11% Similarity=0.089 Sum_probs=93.7
Q ss_pred cEEEEe-CCCceEEEecCC----CCCEEEEEeeecCCccEEEEEE-----------cCCeEEEEEccCCCeeEEecCCCC
Q 002264 476 LIKVWE-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTA-----------IDGKIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~ 539 (945)
.|++.| .+++.+..+.-. .-.+..+.|+..++..++++|+ .+|.++.|++-.......+-.+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 367777 555554443311 1235555666554443444443 234466666544444333222211
Q ss_pred -eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEE--EECC
Q 002264 540 -WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKF--WDMD 615 (945)
Q Consensus 540 -~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i--wd~~ 615 (945)
.-.-.+..|...+++++- ...+++||+...++++...... ...|..+.+ .+..+++|...-.+.+ |+..
T Consensus 934 ~~~~v~Ai~~f~~~~Lagv-----G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGV-----GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred CCccceEEeccCCEEEEec-----ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 112234557666666654 6689999999888777655433 223444544 3668888875444444 5555
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
..+.+..... .-...|+++.+- |...+|.+..=|.+.+..+.
T Consensus 1007 ~n~l~~fadD-~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1007 DNQLIVFADD-PVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCeEEEEeCC-CccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 5554443332 222345555443 55567777777777776654
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.08 E-value=22 Score=34.39 Aligned_cols=50 Identities=12% Similarity=0.384 Sum_probs=36.7
Q ss_pred CEEEEEECCCcEEEEECC--CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
..|+.+...+.|.+|++. ..+....+.. .+.|..+.++..|+++++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence 455555677789999988 3445555544 3479999999999999987543
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.04 E-value=2.8 Score=39.79 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=24.1
Q ss_pred cceeEEEecCCc------ceeeeecCCceEEEEec
Q 002264 916 KRITGLAFSTSL------NILVSSGADAQVTLCVE 944 (945)
Q Consensus 916 ~~V~~l~~s~dg------~~l~s~~~Dg~i~vWdl 944 (945)
..|.+++|||-| -.|++.+.++.|.||..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 479999999954 47888899999999964
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.03 E-value=51 Score=36.00 Aligned_cols=21 Identities=0% Similarity=-0.298 Sum_probs=11.4
Q ss_pred CCCEEEEEEC-CCcEEEEEccC
Q 002264 417 DGNYVGVAFT-KHLIQLYSYAG 437 (945)
Q Consensus 417 ~g~~las~~~-dg~i~vwd~~~ 437 (945)
+++..+.|+. +..+.++|++.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 4555444443 44567777753
No 469
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.75 E-value=47 Score=35.35 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCEEEEEECCCc------EEEEECCC--C--e---eEEEeecCCCC--------CCccEEEEcCCCCEEE
Q 002264 587 SNGVVQFDTTQNHFLAVGEDSQ------IKFWDMDN--V--N---ILTSTDAEGGL--------PNLPRLRFSKEGNLLA 645 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~---~~~~~~~~~~~--------~~v~~v~~sp~g~~l~ 645 (945)
.+..+.+.+++..+++.+.+|. ++.+++.. + . ........... -..-++++.++|.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 4677888877778888888888 76666554 1 1 11111111110 1334788877888887
Q ss_pred EEECC------CcEEEEECCCCccccccccC---C-------ccccccCcceeeeecccccceec
Q 002264 646 VTTAD------NGFKILANAIGLRSLRAVEN---P-------PFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 646 ~~~~d------g~i~iw~~~~~~~~~~~~~~---~-------~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
+.-.+ ..|+-++.. + .....+.- . ..........+++++|+|+.+++
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 76666 678888765 4 22222211 1 11223345789999999996554
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.49 E-value=22 Score=40.82 Aligned_cols=99 Identities=15% Similarity=0.296 Sum_probs=56.8
Q ss_pred eEEEEEecCCCeEEEeeecCe-----EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 767 VVRLLYTNSAVGLLALGSNGV-----QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 767 v~~l~~s~dg~~l~~~~~dg~-----i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
-..+.|-|.|..+++.+.||. +.++. + +|- .-|+.-.. + +-...+..++|..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfE--r-----NGL------------rHGef~lr-~---~~dEk~~~~~wn~ 305 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFE--R-----NGL------------RHGEFDLR-V---GCDEKAFLENWNL 305 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEc--c-----CCc------------ccCCcccc-C---CchhhhhhhhhhH
Confidence 346889999999999886542 22221 1 111 11111000 0 1344567778887
Q ss_pred CCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 842 dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
....+|.+-.+.+++|-..+........-.-..+.-+.|+|...+.|
T Consensus 306 ~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl 352 (1243)
T COG5290 306 LSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTL 352 (1243)
T ss_pred HHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEE
Confidence 78888888888999998776544333332334456667776433333
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.47 E-value=49 Score=35.22 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.2
Q ss_pred CccEEEEEEcC-----CeEEEEEccCCCeeEEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
++.+.+.|+.. ..+..||+.+.+-...-..+. ......+...+++..+.++.+......+..||+.+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 34666666642 357778776544222111111 111222223456666666642211123578898876543
No 472
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=39 Score=34.15 Aligned_cols=328 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred eecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe---CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEE
Q 002264 446 QIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (945)
Q Consensus 446 ~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (945)
.+.+|- ..|..+.....-. ++..|-.=-..-+|+ .+...+..+....+-+..+.++. ++.+.+..+.-++
T Consensus 36 ~~vghfg~~vsavdv~~~ya--~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse----~yvyvad~ssGL~ 109 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYA--YVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSE----EYVYVADWSSGLR 109 (370)
T ss_pred EEeeeccCCccccccccccc--ccccCceEeeccccCcccccCcceEEEEehhhhhheeEecc----cEEEEEcCCCceE
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---CceeeEeccccCcceEEEEEcCCCC
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
+.|+.+.........-...-..-.+.-.|++..++-. +.-+.+.|+.+ ..+...+..... ....++++ |+
T Consensus 110 IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl----ddgfLivdvsdpssP~lagrya~~~~-d~~~v~IS--Gn 182 (370)
T COG5276 110 IVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL----DDGFLIVDVSDPSSPQLAGRYALPGG-DTHDVAIS--GN 182 (370)
T ss_pred EEeccCCCCcceeccccCCceEEEEEecCCEEEEeec----cCcEEEEECCCCCCceeeeeeccCCC-CceeEEEe--cC
Q ss_pred EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+-+.+..|+-+.+-|+........+......+.+.++..+++.-+++..+.. +.+-|..+.
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--vlivd~s~~----------------- 243 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGP----------------- 243 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc--eEEEecCCC-----------------
Q ss_pred cceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecC
Q 002264 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (945)
Q Consensus 679 ~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (945)
..+.++...+
T Consensus 244 ---------------------------------------------------------ssp~~~gsye------------- 253 (370)
T COG5276 244 ---------------------------------------------------------SSPTVFGSYE------------- 253 (370)
T ss_pred ---------------------------------------------------------CCceEeeccc-------------
Q ss_pred CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEe
Q 002264 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (945)
Q Consensus 759 ~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~ 838 (945)
....+.--.+.-.|++...+..+.-+.+-+++.+......... ....-.+-.
T Consensus 254 ----t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~------------------------~t~g~~a~g 305 (370)
T COG5276 254 ----TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSL------------------------DTAGYQAAG 305 (370)
T ss_pred ----cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccc------------------------cCCCccccc
Q ss_pred ecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 839 ~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
...-+.++..+..+...+-+...-+......+-...+.+...+- +.+++.+...++.+.||+...
T Consensus 306 i~ay~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~-~~q~~y~~d~~~gl~i~~~~~ 370 (370)
T COG5276 306 IRAYGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSV-DTQIIYSTDYNGGLSIIEYLG 370 (370)
T ss_pred eEEecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEE-EeeEEEEeecCCCEEEEEecC
No 473
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.35 E-value=45 Score=34.74 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=126.1
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC-CcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.-...+.+|+|..+.. -.++|. .+. |+...+| +.-..... ..-..-.-...+|.|..+ ..
T Consensus 14 ~t~~~l~dV~F~d~~~-G~~VG~-~g~--il~T~DGG~tW~~~~~--------------~~~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNH-GWAVGA-YGT--ILKTTDGGKTWQPVSL--------------DLDNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS-EE-------------------S-----EEEEEEEETT-EE
T ss_pred CCCCceEEEEEecCCE-EEEEec-CCE--EEEECCCCcccccccc--------------CCCccceeeEEEEEecCC-ce
Confidence 3445899999996555 467765 454 4554443 32211000 000001224677888643 34
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCCCCCEEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYS 499 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~v~~ 499 (945)
+++| ..+ +.+...+.|+.-..+..-..-.+....+....++. ..+. +..|.|..=...|+.- .....-.+.+..
T Consensus 75 ~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~-~~~G~iy~T~DgG~tW~~~~~~~~gs~~~ 149 (302)
T PF14870_consen 75 WIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELA-GDRGAIYRTTDGGKTWQAVVSETSGSIND 149 (302)
T ss_dssp EEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEE-ETT--EEEESSTTSSEEEEE-S----EEE
T ss_pred EEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEE-cCCCcEEEeCCCCCCeeEcccCCcceeEe
Confidence 4444 445 55666666765543221111223344455544444 3343 3445543333344332 223344566777
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe-CCCCceee
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKR 578 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd-~~~~~~~~ 578 (945)
+.. .++|.+++++.......-||--...-...-......|.+|.|.|++...+.+. .+.|+.=+ ....+.-.
T Consensus 150 ~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 150 ITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETWS 222 (302)
T ss_dssp EEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE-
T ss_pred EEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCccccc
Confidence 664 44778887776666667786443222333334456899999999988766552 67777766 22222111
Q ss_pred E--ecc-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-CCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 579 T--YAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 579 ~--~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
. ... .....+..+++.+++...++ +..|.+ +...+.|+.-+.... ..-...+..+.|.++.+-++. +.+|.|.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEE
Confidence 1 111 11223667899887665554 445544 345566665544432 222235788888766444444 5677665
Q ss_pred EE
Q 002264 655 IL 656 (945)
Q Consensus 655 iw 656 (945)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=9.7 Score=46.38 Aligned_cols=166 Identities=13% Similarity=0.187 Sum_probs=95.4
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
|...+..+.|...=+.+-+-|.=++ |--+.|..+.+|+.+++..... +.+-+..|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 3344444445555555666665443 2235689999999998655421 444445555554
Q ss_pred E--------cCCCCEEEEEECCCcEEEEEccCCcccccc------eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 414 W--------SPDGNYVGVAFTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 414 ~--------s~~g~~las~~~dg~i~vwd~~~~~~~~~~------~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
. -|.=++++.-+.--.|.++-+.-.+..... ..+......|.++....+|+ +|++|- ||. +
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~-dg~--l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGR-DGN--L 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEeec-CCC--E
Confidence 3 233344444444455777655422211111 12223355788999888888 666555 553 4
Q ss_pred Ee-----CCC---c-e----------------EEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 480 WE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 480 wd-----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
|. .+| + + +..+. .+..+|..+.+..+ ...+++-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S--R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS--RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc--cceeeeeccCceEEEEEccC
Confidence 43 111 1 1 11223 56778999988543 46889999999999999876
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.99 E-value=18 Score=44.61 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
...+.+..+......++... .+.+.+|+.........+..... ..++++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33445555544444444432 45566666554444444433222 11788999999999999999999988
Q ss_pred ee
Q 002264 618 NI 619 (945)
Q Consensus 618 ~~ 619 (945)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.98 E-value=20 Score=34.72 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=43.6
Q ss_pred ceeEEeecCCCceEEecCCCeEEEEecc--CceEEEEecCCCCCeeEEEeecCCCceEEEeecC
Q 002264 833 AVPCIALSKNDSYVMSATGGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~sd~~i~iwd~~--~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d 894 (945)
....++-+..+.++++++..+|.+|++. ..+.+.+|.. -+.|..+.++. .|.+|++--++
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k 80 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEK 80 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEee
Confidence 4455665554455555667889999987 4566777764 47899999999 89999987543
No 477
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.87 E-value=4.8 Score=39.79 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred EeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-------CCCccEEEEEEcCCCCEEEEE
Q 002264 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-------DVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 352 fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~i~~s~~g~~las~ 424 (945)
+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4557776 555677999999999998876532 1111 1122 466789999999999888776
Q ss_pred ECCCcEEEEEccCC
Q 002264 425 FTKHLIQLYSYAGS 438 (945)
Q Consensus 425 ~~dg~i~vwd~~~~ 438 (945)
+ +|..+.|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 4 578899986543
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.84 E-value=75 Score=36.76 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=90.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec-cccccEEEEEEec-----CCCeeEEEEEe-C-C-Cc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAY-----PNKLLCVVTCG-D-D-KL 476 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~-----~~~~~~l~s~s-~-d-~~ 476 (945)
.+.|..|.|.++++.+++...+|.|.+||...+...... .+. .+...+.-=.|-+ +++.++|+.+. . + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 568999999999999999999999999999332211100 111 1222221113322 23332333333 1 2 24
Q ss_pred EEEEeC--CCceEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC----C--CeEEEEE
Q 002264 477 IKVWEL--SGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----G--HWCTTML 545 (945)
Q Consensus 477 i~vwd~--~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~--~~i~~~~ 545 (945)
.+++.. ++..+..+. .+........|... .|.+.-- .+++|.+|++...+...++..+ . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 566664 444444443 22222333344433 3433222 7789999998777655544433 1 2344444
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
--...+.|++. ++.|++.|+.-...+..+.
T Consensus 285 ~~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 32334445544 6789999987665555544
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.84 E-value=0.17 Score=53.56 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=94.5
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
.......|.+.+.-++.++.+..+..||- ......... ..+....++|..++.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~----------------------agq~~le~n-----~tg~aldm~wDkegd 87 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDK----------------------AGQVILELN-----PTGKALDMAWDKEGD 87 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhh----------------------hcceecccC-----CchhHhhhhhccccc
Confidence 33445677777777888888877766651 111111111 234556678888887
Q ss_pred eEEecC--CCeEEEEeccCceEEEEec-CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEE
Q 002264 845 YVMSAT--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (945)
Q Consensus 845 ~la~~s--d~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 921 (945)
.++... .+.+.+||+.+... .+++ +-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++.+
T Consensus 88 vlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~ 165 (615)
T KOG2247|consen 88 VLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQI 165 (615)
T ss_pred hhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEE
Confidence 776665 67899999875322 2222 1111112278999 88999999999999999998877766666699999999
Q ss_pred EecCCcceeeeecCCc
Q 002264 922 AFSTSLNILVSSGADA 937 (945)
Q Consensus 922 ~~s~dg~~l~s~~~Dg 937 (945)
++.+.+.. +.++.|.
T Consensus 166 av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 166 AVTLEDYV-ILCDCDN 180 (615)
T ss_pred Eeccccee-eecCcHH
Confidence 99987643 3344443
No 480
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.43 E-value=29 Score=30.75 Aligned_cols=113 Identities=10% Similarity=0.041 Sum_probs=64.5
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCcccc-----cceeeccccccEEEEEEec---CCCeeEEEEEeCCCcEEEEe-C
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-----QHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~~~~~-----~~~~~~~h~~~v~~l~~s~---~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
-.|......|++++.-|+|.|++........ .+..+ .-...|++++-.+ +...-.|+.|+ ...+..|| .
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4566666688889999999999876443211 11122 2445677776443 32222677676 66788999 4
Q ss_pred CCceEEEecCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 527 (945)
++..+ -++.-.+.|+++.+-.-.+ ..-++..+.+..|.-||.+-
T Consensus 82 ~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 44433 2334456677776632221 12344445566676666543
No 481
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.38 E-value=71 Score=34.47 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=81.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC-CCceE---
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKL--- 487 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~-~~~~~--- 487 (945)
+-|. |.+..+.+...|.+.-|-++....=-....-....++|.++.||+|.+ .++.--.|++|.+++. ..+..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHH
Confidence 3344 333333344556677776654332111112224567999999999999 8999999999999993 32222
Q ss_pred -EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 488 -FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 488 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+.+.....|.+.+|..+ .-++..+..| +.+|-...... ......+.-.|.-..|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 222334455888888654 3354444433 45554433222 222334555677888888888766554
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.27 E-value=55 Score=35.92 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=62.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
.-.|..+..|+.|..+|-.|.+|.+..+=.+. ...-..+......|+|=.|.-+.+ |++.+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~r---wG~~s~~eDgk~~v~CRt~~i~~~---~ftss------------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKR---WGKNSEFEDGKSTVNCRTTPVAER---FFTSS------------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhh---cCccceecCCCceEEEEeecccce---eeccC-------------
Confidence 34688899999999999999999554442111 111113333444455555544433 33322
Q ss_pred eEEEecCCCCCEEEEEeeecC--CccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 486 KLFNFEGHEAPVYSICPHHKE--NIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
..-.+...+|+|+. | ..|..-+.|..||+||+..........+
T Consensus 164 -------~~ltl~Qa~WHP~S~~D-~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 164 -------TSLTLKQAAWHPSSILD-PHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred -------CceeeeeccccCCccCC-ceEEEEecCcEEEEEecCCcchhhccCC
Confidence 11124455677654 4 4677778899999999987766654433
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.22 E-value=4 Score=27.55 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCCceEEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEe
Q 002264 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAF 880 (945)
Q Consensus 841 ~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (945)
||+++|.+++ +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5777777765 67899999999988888775 233344444
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.95 E-value=40 Score=38.43 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=54.6
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....++++.-+|.|..++.+..||.|++|+......-+ +-....+-..+.|...| +++...|..+.-|..+|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheeeccC
Confidence 34567888889999999999999999999987643321 11233345566776554 46666788888888777
Q ss_pred ceEEEe
Q 002264 485 RKLFNF 490 (945)
Q Consensus 485 ~~~~~~ 490 (945)
-..+.|
T Consensus 85 vvqqqf 90 (1636)
T KOG3616|consen 85 VVQQQF 90 (1636)
T ss_pred cchhhc
Confidence 544444
No 485
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.55 E-value=57 Score=32.76 Aligned_cols=229 Identities=11% Similarity=0.032 Sum_probs=133.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
.-..++-+|||..-.++...+.|--.|..+|+.... --+....-..|..-|||. .-++-+.. -|.-.| .+..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e- 135 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE- 135 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc-
Confidence 345678888998888887777787778888765431 113334455677777777 33432222 444455 3332
Q ss_pred EEEec----CCCCCEEEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 487 LFNFE----GHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 487 ~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
+.+|. .-........|.+ .|.+-+++... +.|++|+.. .+..-..|+..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~--~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDP--WGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceeeCC--CccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence 22221 1233455555543 55666665421 234444322 23345678899999987
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEecccc--CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
++.-. .+.|-..|..++... .+.... ......+..+|.+..-++....+.++.||..+.. -......+....
T Consensus 204 yasla----gnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ar 277 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKAR 277 (353)
T ss_pred EEecc----ccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCC
Confidence 77543 566777787776322 222111 1134456677888888887788889888877655 444555554445
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
-.++.....++.-.+--..|.|.-+|.++.
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCcccc
Confidence 566777666666555555566666666554
No 486
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=57 Score=31.29 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=90.0
Q ss_pred EEEEEeCC--CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEE
Q 002264 467 CVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 467 ~l~s~s~d--~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 543 (945)
++.+.+.- ..|++|| .+|+.+..-.-....+..=-....++ .+..-.-.+|.-..+|.++.+....+...+. -..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 66666543 3689999 66776654332211111110111112 2333345677778898888777766655543 122
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe----ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
+ ..|++.|+.+. +...++.-|.++.....++ .+..-..++-+.|- +|...+-.=.+..|...+..+|+.
T Consensus 136 L--t~d~~~Limsd----GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 L--TSDDKNLIMSD----GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred e--ecCCcceEeeC----CceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 2 34566666543 4667777787765444333 22221122333332 343433344555666667777777
Q ss_pred EEEeecCC----------CCCCccEEEEcCCCCEEEE
Q 002264 620 LTSTDAEG----------GLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 620 ~~~~~~~~----------~~~~v~~v~~sp~g~~l~~ 646 (945)
+..+...+ +..-.+.+++.|++..+..
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 66554321 2234678899987744443
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.03 E-value=96 Score=33.77 Aligned_cols=225 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+..+..+..+|.|.-.|.+++..+-...... ....+..-.+..+|+ ++.++.++.+..+| .+|+.+....... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCC-C
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
..+.=.+-.....++.++.++.+...|..++.......... .....-........++.+... . ++.+.-.|..+|
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C-cceEEEEEccCC
Q ss_pred ceeeEeccccCcceEEEEEcCC--------CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTT--------QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
...-..............-.|. +..++.++.++.+...+..+++.+..+.................+
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~----- 294 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG----- 294 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC-----
Q ss_pred EECCCcEEEEE
Q 002264 647 TTADNGFKILA 657 (945)
Q Consensus 647 ~~~dg~i~iw~ 657 (945)
.||.+.++.
T Consensus 295 --~dG~v~~~~ 303 (370)
T COG1520 295 --ADGKVYIGF 303 (370)
T ss_pred --CCccEEEEE
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.85 E-value=23 Score=35.44 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=78.1
Q ss_pred EEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC----CceeeEec-cccCcceEEEEEcC
Q 002264 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE----GTIKRTYA-GFRKKSNGVVQFDT 595 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~~ 595 (945)
.+||+.+.+...........+.+-.+-+||+.+.+++. .++...+++++... ........ -...........-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 47888876654433333334555667899999988885 45677788888654 11111100 01111334456678
Q ss_pred CCCEEEEEECCCc-EEEEECCC--CeeEE--Eeec---CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 596 TQNHFLAVGEDSQ-IKFWDMDN--VNILT--STDA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 596 ~~~~l~~~~~dg~-i~iwd~~~--~~~~~--~~~~---~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
||+.|+.||.+.. ..+|.-.. ..... .+.. .....--..+...|+|++++.+..+ -.|||..++
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC
Confidence 9999999987643 44554321 11111 1110 0111122356778999999888765 455687766
No 489
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.68 E-value=1e+02 Score=37.21 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=43.4
Q ss_pred CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (945)
Q Consensus 354 p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vw 433 (945)
.-|+ .|..|+.+|.+.+|.+........... ... ...+. ..+ +..+|..+...+.-.++.+- .|+.|.++
T Consensus 24 ~~~~-~l~vGt~~G~L~lY~i~~~~~~~~~~~----~~~-~~~~~-~~~--~kk~i~~l~~~~~~~~ll~l-~dsqi~~~ 93 (877)
T KOG2063|consen 24 AYGN-HLYVGTRDGDLYLYSIYERGNPESVEL----VTE-TVKFE-KEF--SKKPINKLLVCASLELLLIL-SDSQIAVH 93 (877)
T ss_pred HhCC-EEEEEcCCCcEEEEeccccccccchhh----hcc-hhHHh-hhh--ccchhHHHhhcchhcchhee-cCCcceee
Confidence 3455 488899999999999876543221111 000 00000 111 25677777766655555544 46678888
Q ss_pred EccCCcc
Q 002264 434 SYAGSND 440 (945)
Q Consensus 434 d~~~~~~ 440 (945)
++.+-+.
T Consensus 94 ~l~~~~~ 100 (877)
T KOG2063|consen 94 KLPELEP 100 (877)
T ss_pred ecCcccc
Confidence 8776554
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.58 E-value=1.4e+02 Score=34.81 Aligned_cols=97 Identities=13% Similarity=0.278 Sum_probs=49.8
Q ss_pred EEEEEcCCCCEEEEEeecCC-CCceEEEEeCCCCceeeEe--ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 542 TTMLYSADGSRLFSCGTSKD-GDSFLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d-~~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
..++|-|+|..+++.+.++. ....+..+.. +|-....+ ....+..+...+|+-....+ .....+.+.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vl-av~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVL-AVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHH-HHhhcceEEEEEccceE
Confidence 34789999999998875322 1223444432 22111111 11111123345555433222 33456689999877655
Q ss_pred eEEEeecCCCCCCccEEEEcCCCC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
..-..... .+.+.-+.|+|...
T Consensus 328 WYLK~e~~--ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVERQ--IPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEeec--CCCcceeeeccccC
Confidence 43332222 23577899999543
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.45 E-value=47 Score=34.24 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=52.1
Q ss_pred cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe------CCCcEEEEeCCCceEEEecCC-----CCCE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGH-----EAPV 497 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~-----~~~v 497 (945)
.|++||..+.+-.. .-.+-.+.|+++.|..+.+ +++.|. ....+..||.+......+.+- .++|
T Consensus 17 ~lC~yd~~~~qW~~---~g~~i~G~V~~l~~~~~~~--Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 17 GLCLYDTDNSQWSS---PGNGISGTVTDLQWASNNQ--LLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred EEEEEECCCCEeec---CCCCceEEEEEEEEecCCE--EEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE
Confidence 49999988754333 1224567899999996655 666664 455788899555555555542 3678
Q ss_pred EEEEeeecCCccEEEEEE
Q 002264 498 YSICPHHKENIQFIFSTA 515 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~ 515 (945)
..+.+......++.+.|.
T Consensus 92 ~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGR 109 (281)
T ss_pred EEEEeeccCCceEEEece
Confidence 888775443334554544
No 492
>PLN02153 epithiospecifier protein
Probab=78.39 E-value=1e+02 Score=33.11 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=29.1
Q ss_pred ceEEEEeCCCCceeeEec-cc-cCcceEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCee
Q 002264 564 SFLVEWNESEGTIKRTYA-GF-RKKSNGVVQFDTTQNHFLAVGED--------------SQIKFWDMDNVNI 619 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~ 619 (945)
..+.+||+.+.+....-. +. ........+...++..++.|+.. +.++.+|..+..-
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 468899988776543321 10 00011111222345667777741 2578888876654
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=78.15 E-value=99 Score=32.86 Aligned_cols=110 Identities=8% Similarity=-0.003 Sum_probs=52.7
Q ss_pred ccEEEEEEcCC-----eEEEEEccCCCee---EEecCCCCeE--EEEEEcCCCCEEEEEeec-CCCCceEEEEeCCCCce
Q 002264 508 IQFIFSTAIDG-----KIKAWLYDTMGSR---VDYDAPGHWC--TTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTI 576 (945)
Q Consensus 508 ~~~l~s~~~dg-----~i~iwd~~~~~~~---~~~~~~~~~i--~~~~~s~~~~~l~~~~~~-~d~~~~i~iwd~~~~~~ 576 (945)
+.+++.|+.++ .+..||+.+..-. .....-.... .+++. -+++..+.++.. ......+..||+.+.+.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 35666776543 4666777665431 1111111111 12222 245555555531 11234688899887654
Q ss_pred eeE--eccccCcceEEEEEcCCCCEEEEEECCC----cEEEEECCCCeeE
Q 002264 577 KRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS----QIKFWDMDNVNIL 620 (945)
Q Consensus 577 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 620 (945)
... +.... .....+...+++..+.|+.++ .+.+||..+.+-.
T Consensus 152 ~~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 332 22111 112222333466677777553 3568888776543
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.81 E-value=20 Score=36.92 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=50.8
Q ss_pred eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee------cCceEEEEecccceEEEEecC-----CCcceeEE
Q 002264 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT------EDSTIHIYNVRVDEVKSKLKG-----HQKRITGL 921 (945)
Q Consensus 853 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~------~dg~v~vwd~~~~~~~~~l~~-----h~~~V~~l 921 (945)
.|++||..+.+-...-.+-.+.|+++.|.. +.++++.|. ....+..||..+... ..+.+ -.++|+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 499999887766555556677899999997 777888775 455788999887653 23333 23778888
Q ss_pred Eec
Q 002264 922 AFS 924 (945)
Q Consensus 922 ~~s 924 (945)
.+.
T Consensus 95 ~~~ 97 (281)
T PF12768_consen 95 TFI 97 (281)
T ss_pred Eee
Confidence 875
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.40 E-value=70 Score=35.53 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=39.6
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-CCCccEEEEEEcCCC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDG 418 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~s~~g 418 (945)
..-...+.|+|.|||+ +|++--..|.|++++..++.......+ . .+.. ...+....|+++|+-
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~-~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------P-EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------C-ceeccCCCCceeeEEECCCc
Confidence 3455889999999997 677654369999998655432110000 0 0111 135778999999874
No 496
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=77.07 E-value=12 Score=31.51 Aligned_cols=85 Identities=18% Similarity=0.115 Sum_probs=52.4
Q ss_pred CHHHHHHHHHhhcccccccCH---HHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCccccccccCCC
Q 002264 89 DKAKAVDILVNDLKVFSTFNE---ELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPT 165 (945)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~---~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~ 165 (945)
+..+|+++.|+.+.|+...++ +.+.++..+|..+...+...+... -....|+.+.+.+.+.+-...- .
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~l-l~~~~~~~la~~~n~~~l~~~~--------~ 72 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKEL-LSPSQREKLAEELNSAILELLH--------G 72 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHH-CCHHHHHHHHHHHHHHHHHHcc--------C
Confidence 578999999999999976663 456666667766554112112111 1334678888888765533110 0
Q ss_pred CC-chHHHHHHHHHHHHH
Q 002264 166 LK-SSRLRTLINQSLNWQ 182 (945)
Q Consensus 166 ~p-~~rL~~ll~q~~~~q 182 (945)
.| ...|+.++.+.+..+
T Consensus 73 ~~~~s~L~~~~~~~~~~~ 90 (99)
T smart00757 73 KSSESPLEILLSAGLAAL 90 (99)
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 22 456899998776655
No 497
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=76.76 E-value=4.1 Score=32.35 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhhCCCCC
Q 002264 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN 37 (945)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (945)
-++-||..||.=.||+-|+..|+.|||..-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 3578999999999999999999999998743
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=76.46 E-value=1.2e+02 Score=32.74 Aligned_cols=20 Identities=0% Similarity=-0.358 Sum_probs=10.9
Q ss_pred CCCEEEEEEC-CCcEEEEEcc
Q 002264 417 DGNYVGVAFT-KHLIQLYSYA 436 (945)
Q Consensus 417 ~g~~las~~~-dg~i~vwd~~ 436 (945)
+++..+.|+. ...+..+|++
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~ 37 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLK 37 (346)
T ss_pred CCEEEEEccccCCeeEEEECC
Confidence 4555555554 2456677763
No 499
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=75.43 E-value=1.4e+02 Score=33.39 Aligned_cols=138 Identities=12% Similarity=0.138 Sum_probs=70.8
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
...|..+.+...|.+. .|+.|| +..||..+++.++.. ......+|..+.-+-.|. +..|+.+| +.+.+..|.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 4678888998888554 577777 777887777655421 112335677777777776 56666444 666665553
Q ss_pred eEEEec--CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe---cCCCCeEEEEEEcCCCCEEEE
Q 002264 486 KLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 486 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~ 555 (945)
...... -....|..+.- +.. ..+-.|+..|..+. ........... ...-+.|.++....+|..-+.
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~ 306 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVG 306 (671)
T ss_pred cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeee
Confidence 222111 11223333321 222 24555666655432 22222221111 111224566666666665443
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.35 E-value=1.5e+02 Score=33.55 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=76.4
Q ss_pred EEEEE---eCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCe---
Q 002264 467 CVVTC---GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW--- 540 (945)
Q Consensus 467 ~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 540 (945)
++++. ...+...+.|.+|.....+......... |...++|.+++..+ +.+..+|+. ++...........
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEECCCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccccc
Confidence 56665 3456677778778776555432222211 22344666665444 778888864 4444444444432
Q ss_pred EEEEEEcCCCCEEEEEee---------cCCCCceEEEEeCCCCceeeEeccc------c----------------C----
Q 002264 541 CTTMLYSADGSRLFSCGT---------SKDGDSFLVEWNESEGTIKRTYAGF------R----------------K---- 585 (945)
Q Consensus 541 i~~~~~s~~~~~l~~~~~---------~~d~~~~i~iwd~~~~~~~~~~~~~------~----------------~---- 585 (945)
-..+..-|+|++|+.+.. ...-...|..+| .+|+.+..+... . .
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 245667799998887762 011122355556 666655442210 0 0
Q ss_pred cceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEEeecCC
Q 002264 586 KSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
..++++.+.+....|+..+. -..|...|.++++....+..+.
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 12677888885556666554 4588889988999888876553
Done!