Query 002264
Match_columns 945
No_of_seqs 962 out of 4365
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.6E-63 5.5E-68 585.1 65.1 520 339-943 11-577 (577)
2 1nr0_A Actin interacting prote 100.0 5.1E-63 1.7E-67 581.2 61.8 539 327-945 43-610 (611)
3 1nr0_A Actin interacting prote 100.0 2.7E-60 9.2E-65 558.1 58.7 510 343-945 17-566 (611)
4 3sfz_A APAF-1, apoptotic pepti 100.0 9.4E-58 3.2E-62 585.1 57.6 559 338-944 609-1247(1249)
5 2ymu_A WD-40 repeat protein; u 100.0 5E-57 1.7E-61 529.9 58.5 482 400-944 10-537 (577)
6 1pgu_A Actin interacting prote 100.0 3.8E-56 1.3E-60 527.0 56.5 532 342-945 16-613 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 6E-53 2.1E-57 512.6 58.4 559 338-945 11-731 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-53 4.7E-58 546.5 49.4 514 400-944 609-1205(1249)
9 2oaj_A Protein SNI1; WD40 repe 100.0 5.7E-51 1.9E-55 495.3 56.9 526 327-945 43-782 (902)
10 1pgu_A Actin interacting prote 100.0 3.1E-50 1.1E-54 476.3 49.6 500 327-904 43-614 (615)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-48 5.1E-53 477.8 51.3 476 340-942 9-501 (814)
12 1vyh_C Platelet-activating fac 100.0 6.6E-46 2.3E-50 413.1 40.5 285 340-658 104-409 (410)
13 3mkq_A Coatomer beta'-subunit; 100.0 2.6E-44 9E-49 440.2 46.4 441 400-945 7-459 (814)
14 3ow8_A WD repeat-containing pr 100.0 1.7E-40 5.8E-45 355.9 40.3 286 342-659 30-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 9.4E-40 3.2E-44 354.0 44.0 290 337-657 47-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 1E-39 3.5E-44 355.3 43.3 294 336-657 55-354 (354)
17 3ow8_A WD repeat-containing pr 100.0 6E-40 2.1E-44 351.6 40.8 293 485-945 23-320 (321)
18 3frx_A Guanine nucleotide-bind 100.0 1.2E-39 4.2E-44 349.4 40.4 295 341-661 14-318 (319)
19 2ynn_A Coatomer subunit beta'; 100.0 3.5E-39 1.2E-43 343.5 41.5 286 341-660 10-302 (304)
20 1vyh_C Platelet-activating fac 100.0 3.2E-39 1.1E-43 359.1 40.8 246 402-661 104-370 (410)
21 3iz6_a 40S ribosomal protein R 100.0 1.2E-39 4.1E-44 359.0 36.4 300 336-661 57-376 (380)
22 4g56_B MGC81050 protein; prote 100.0 2.9E-39 9.8E-44 352.0 37.1 293 341-661 39-344 (357)
23 1got_B GT-beta; complex (GTP-b 100.0 2.9E-38 9.9E-43 342.3 42.9 248 401-661 50-302 (340)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-38 8.2E-43 343.6 40.7 300 337-662 7-337 (345)
25 4gqb_B Methylosome protein 50; 100.0 1.6E-38 5.4E-43 342.9 37.4 297 342-661 28-332 (344)
26 4ery_A WD repeat-containing pr 100.0 3.1E-37 1.1E-41 330.5 44.1 288 339-659 18-311 (312)
27 1r5m_A SIR4-interacting protei 100.0 6.8E-38 2.3E-42 351.9 40.4 302 339-661 40-362 (425)
28 2ynn_A Coatomer subunit beta'; 100.0 1.7E-37 5.7E-42 330.5 39.9 249 400-661 7-260 (304)
29 2pbi_B Guanine nucleotide-bind 100.0 2.9E-37 1E-41 335.9 41.2 249 401-661 59-316 (354)
30 1r5m_A SIR4-interacting protei 100.0 2.4E-37 8.3E-42 347.4 41.7 341 476-945 26-424 (425)
31 2xzm_R RACK1; ribosome, transl 100.0 3.4E-37 1.2E-41 334.5 40.8 296 340-661 17-341 (343)
32 2hes_X YDR267CP; beta-propelle 100.0 4.8E-37 1.6E-41 331.1 40.3 291 340-660 10-328 (330)
33 1erj_A Transcriptional repress 100.0 3.9E-37 1.3E-41 340.6 40.6 307 337-660 57-389 (393)
34 2pm9_A Protein WEB1, protein t 100.0 3.1E-38 1.1E-42 353.7 30.3 368 343-745 11-414 (416)
35 4aow_A Guanine nucleotide-bind 100.0 1E-36 3.5E-41 331.1 41.4 300 337-662 30-339 (340)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-36 3.7E-41 330.5 39.5 207 444-659 8-224 (345)
37 2pm9_A Protein WEB1, protein t 100.0 4E-38 1.4E-42 352.8 29.0 332 406-944 12-412 (416)
38 4g56_B MGC81050 protein; prote 100.0 2.5E-37 8.6E-42 336.7 34.3 279 347-661 8-302 (357)
39 3frx_A Guanine nucleotide-bind 100.0 2.4E-36 8.1E-41 323.9 40.5 248 400-661 11-268 (319)
40 4ery_A WD repeat-containing pr 100.0 5.2E-36 1.8E-40 320.9 42.8 251 400-661 17-269 (312)
41 3iz6_a 40S ribosomal protein R 100.0 5.3E-37 1.8E-41 337.9 35.7 308 565-944 47-373 (380)
42 4gqb_B Methylosome protein 50; 100.0 4.7E-37 1.6E-41 331.4 34.3 297 521-945 17-330 (344)
43 1gxr_A ESG1, transducin-like e 100.0 1.6E-36 5.5E-41 329.0 38.0 285 343-661 8-297 (337)
44 1gxr_A ESG1, transducin-like e 100.0 5E-36 1.7E-40 325.1 38.3 319 450-944 8-335 (337)
45 3vl1_A 26S proteasome regulato 100.0 1.9E-36 6.4E-41 339.7 35.0 342 407-944 57-417 (420)
46 3vl1_A 26S proteasome regulato 100.0 2.7E-36 9.2E-41 338.4 35.6 282 346-661 58-366 (420)
47 3gre_A Serine/threonine-protei 100.0 1E-36 3.5E-41 343.6 31.3 382 351-943 34-437 (437)
48 3dm0_A Maltose-binding peripla 100.0 1.2E-35 4.1E-40 354.9 41.2 294 340-659 378-692 (694)
49 1erj_A Transcriptional repress 100.0 1.5E-35 5E-40 328.0 38.2 289 536-944 62-387 (393)
50 3ei3_B DNA damage-binding prot 100.0 1.8E-35 6E-40 327.1 38.6 290 340-660 69-382 (383)
51 2xzm_R RACK1; ribosome, transl 100.0 8.6E-35 2.9E-39 315.6 42.6 247 400-661 15-286 (343)
52 2hes_X YDR267CP; beta-propelle 100.0 9.8E-35 3.3E-39 313.0 40.7 299 484-945 4-327 (330)
53 2j04_B YDR362CP, TAU91; beta p 100.0 2E-36 7E-41 342.7 27.9 349 405-904 132-517 (524)
54 3v7d_B Cell division control p 100.0 2.7E-34 9.3E-39 326.5 43.8 342 401-944 116-461 (464)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-34 2.1E-38 321.5 46.3 277 339-661 113-392 (445)
56 2j04_B YDR362CP, TAU91; beta p 100.0 5.3E-36 1.8E-40 339.4 29.3 358 335-795 124-517 (524)
57 3zwl_B Eukaryotic translation 100.0 2.8E-34 9.4E-39 315.7 42.1 290 336-661 24-347 (369)
58 1sq9_A Antiviral protein SKI8; 100.0 6.5E-35 2.2E-39 324.4 36.7 292 341-661 13-396 (397)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.6E-34 1.9E-38 321.8 44.3 314 446-945 113-441 (445)
60 3v7d_B Cell division control p 100.0 1.6E-33 5.4E-38 320.2 47.2 282 337-661 114-422 (464)
61 3odt_A Protein DOA1; ubiquitin 100.0 5.4E-34 1.8E-38 305.5 40.6 287 336-661 9-297 (313)
62 4aow_A Guanine nucleotide-bind 100.0 9.7E-34 3.3E-38 307.5 43.0 210 442-661 29-247 (340)
63 4e54_B DNA damage-binding prot 100.0 2E-35 6.8E-40 332.0 29.2 294 341-661 116-431 (435)
64 3i2n_A WD repeat-containing pr 100.0 1.1E-34 3.8E-39 317.4 33.7 296 335-661 8-354 (357)
65 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-34 6.4E-39 317.6 34.7 292 343-666 7-367 (372)
66 3k26_A Polycomb protein EED; W 100.0 4.2E-35 1.4E-39 321.9 29.1 290 342-659 16-365 (366)
67 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-34 3.8E-39 317.3 27.5 315 343-784 14-350 (588)
68 3zwl_B Eukaryotic translation 100.0 4.5E-33 1.5E-37 306.0 40.7 301 531-945 25-345 (369)
69 1k32_A Tricorn protease; prote 100.0 5.1E-33 1.8E-37 346.8 43.8 495 318-944 27-635 (1045)
70 4aez_A CDC20, WD repeat-contai 100.0 4.5E-33 1.5E-37 309.4 38.7 293 338-663 85-383 (401)
71 4gga_A P55CDC, cell division c 100.0 1.3E-32 4.5E-37 307.6 42.5 282 346-661 107-396 (420)
72 3ei3_B DNA damage-binding prot 100.0 4.1E-33 1.4E-37 308.1 37.9 299 446-904 68-382 (383)
73 3gre_A Serine/threonine-protei 100.0 9.5E-34 3.3E-38 319.3 33.1 296 335-657 52-437 (437)
74 3dwl_C Actin-related protein 2 100.0 9.5E-35 3.3E-39 320.5 22.3 285 343-658 10-377 (377)
75 3dm0_A Maltose-binding peripla 100.0 7.4E-33 2.5E-37 330.8 39.8 249 400-661 376-633 (694)
76 1sq9_A Antiviral protein SKI8; 100.0 5.9E-33 2E-37 308.6 36.4 252 400-661 10-323 (397)
77 4h5i_A Guanine nucleotide-exch 100.0 2E-33 6.7E-38 306.8 31.8 300 343-661 13-344 (365)
78 1k8k_C P40, ARP2/3 complex 41 100.0 8.2E-33 2.8E-37 304.4 35.9 246 402-660 4-274 (372)
79 2pm7_B Protein transport prote 100.0 9.2E-33 3.1E-37 292.8 34.9 252 401-660 4-285 (297)
80 4a11_B DNA excision repair pro 100.0 7.8E-33 2.7E-37 308.8 35.7 363 474-945 22-404 (408)
81 4a11_B DNA excision repair pro 100.0 2.2E-32 7.5E-37 305.2 39.2 303 340-662 39-367 (408)
82 4ggc_A P55CDC, cell division c 100.0 6.3E-32 2.1E-36 290.2 41.3 282 346-661 27-316 (318)
83 4h5i_A Guanine nucleotide-exch 100.0 5.5E-34 1.9E-38 311.1 25.1 289 586-945 15-342 (365)
84 3i2n_A WD repeat-containing pr 100.0 7.9E-33 2.7E-37 302.6 33.0 295 534-945 14-352 (357)
85 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-34 1.1E-38 313.6 20.7 315 405-892 14-349 (588)
86 3k26_A Polycomb protein EED; W 100.0 1.5E-32 5.2E-37 301.5 34.2 250 400-661 12-319 (366)
87 3dw8_B Serine/threonine-protei 100.0 6.3E-33 2.2E-37 313.8 31.8 300 341-659 25-445 (447)
88 2pm7_B Protein transport prote 100.0 3.7E-32 1.3E-36 288.1 35.2 250 340-615 5-284 (297)
89 3dwl_C Actin-related protein 2 100.0 1.5E-33 5E-38 311.0 23.5 242 402-659 7-280 (377)
90 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-31 6.4E-36 285.7 37.5 240 400-661 12-256 (313)
91 4e54_B DNA damage-binding prot 100.0 7.2E-32 2.5E-36 303.0 35.0 288 535-945 116-429 (435)
92 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-31 4.2E-36 301.3 35.8 273 342-662 131-416 (435)
93 1k32_A Tricorn protease; prote 100.0 6.3E-31 2.1E-35 328.0 45.1 433 343-944 13-500 (1045)
94 4gga_A P55CDC, cell division c 100.0 4.8E-31 1.7E-35 294.8 39.2 280 540-944 107-393 (420)
95 1yfq_A Cell cycle arrest prote 100.0 1.4E-31 4.7E-36 290.8 32.8 279 342-656 9-320 (342)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 4.6E-32 1.6E-36 301.6 29.5 295 346-661 36-343 (402)
97 4ggc_A P55CDC, cell division c 100.0 2E-30 6.9E-35 278.4 38.4 279 541-944 28-313 (318)
98 3bg1_A Protein SEC13 homolog; 100.0 3.8E-32 1.3E-36 290.8 24.4 250 400-659 7-292 (316)
99 3mmy_A MRNA export factor; mRN 100.0 4.2E-31 1.4E-35 290.1 33.4 289 334-658 28-344 (368)
100 3bg1_A Protein SEC13 homolog; 100.0 5.4E-32 1.9E-36 289.5 25.2 249 341-615 10-292 (316)
101 4aez_A CDC20, WD repeat-contai 100.0 5.1E-31 1.8E-35 292.8 33.3 239 404-661 89-337 (401)
102 3dw8_B Serine/threonine-protei 100.0 7.5E-31 2.6E-35 296.7 34.1 249 404-662 26-375 (447)
103 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-31 1.1E-35 288.7 29.5 298 339-661 6-338 (351)
104 3jrp_A Fusion protein of prote 100.0 2E-30 6.8E-35 286.1 32.6 252 341-618 8-289 (379)
105 1yfq_A Cell cycle arrest prote 100.0 8.7E-30 3E-34 276.6 35.5 248 402-661 7-283 (342)
106 3jrp_A Fusion protein of prote 100.0 5.5E-30 1.9E-34 282.5 32.7 254 400-661 5-288 (379)
107 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5.1E-34 275.4 35.0 209 446-661 6-250 (351)
108 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-29 6.1E-34 283.7 35.7 233 403-661 130-366 (435)
109 3mmy_A MRNA export factor; mRN 100.0 7.4E-30 2.5E-34 280.2 31.8 277 400-694 33-332 (368)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-29 3.5E-34 282.6 28.1 275 408-693 36-329 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.2E-29 2.1E-33 280.5 34.8 298 345-660 5-391 (450)
112 2w18_A PALB2, fancn, partner a 100.0 4.2E-28 1.4E-32 248.9 35.8 294 453-945 41-356 (356)
113 1l0q_A Surface layer protein; 100.0 8.8E-28 3E-32 266.1 41.5 274 358-669 3-283 (391)
114 3jro_A Fusion protein of prote 100.0 9.6E-30 3.3E-34 305.1 26.5 252 341-618 6-287 (753)
115 3jro_A Fusion protein of prote 100.0 2.1E-29 7.3E-34 302.1 26.7 253 401-661 4-286 (753)
116 3bws_A Protein LP49; two-domai 100.0 2.1E-27 7.2E-32 267.1 41.4 371 343-904 26-432 (433)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-28 1E-32 274.9 34.2 285 539-944 5-389 (450)
118 3bws_A Protein LP49; two-domai 100.0 6.8E-28 2.3E-32 271.1 36.5 302 327-659 103-431 (433)
119 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-28 5.1E-33 267.3 28.7 277 341-661 16-337 (355)
120 2xyi_A Probable histone-bindin 100.0 1.9E-28 6.7E-33 274.4 30.2 265 337-617 121-411 (430)
121 2xyi_A Probable histone-bindin 100.0 5.8E-28 2E-32 270.5 32.8 309 344-661 45-411 (430)
122 3vu4_A KMHSV2; beta-propeller 100.0 1E-27 3.6E-32 260.6 32.8 238 402-661 15-272 (355)
123 1l0q_A Surface layer protein; 100.0 2E-26 7E-31 255.1 41.8 332 467-937 4-372 (391)
124 4gq1_A NUP37; propeller, trans 100.0 7.5E-28 2.6E-32 265.8 27.8 303 344-658 15-387 (393)
125 3lrv_A PRE-mRNA-splicing facto 100.0 6.9E-28 2.3E-32 261.3 26.5 274 459-942 44-329 (343)
126 3lrv_A PRE-mRNA-splicing facto 100.0 4.9E-28 1.7E-32 262.5 24.0 267 351-659 43-332 (343)
127 2w18_A PALB2, fancn, partner a 99.9 5.8E-26 2E-30 233.1 29.1 287 346-658 41-355 (356)
128 4gq1_A NUP37; propeller, trans 99.9 4.8E-27 1.7E-31 259.3 21.6 250 340-614 85-387 (393)
129 1nir_A Nitrite reductase; hemo 99.9 8E-25 2.7E-29 250.1 40.2 335 459-914 145-524 (543)
130 1nir_A Nitrite reductase; hemo 99.9 6.1E-25 2.1E-29 251.1 37.1 316 507-944 148-512 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.7E-25 1.6E-29 244.7 27.6 304 345-689 63-409 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-23 5.7E-28 232.2 32.0 304 496-928 64-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 9.8E-24 3.4E-28 254.6 32.7 333 344-696 36-443 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-23 5E-28 253.1 32.2 324 451-944 36-457 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-24 1.4E-28 257.2 25.2 321 346-697 18-429 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 7.1E-22 2.4E-26 236.8 35.9 237 409-659 28-341 (706)
137 3u4y_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 210.7 34.6 279 350-661 3-305 (331)
138 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-22 5.7E-27 243.2 26.3 347 453-933 18-427 (723)
139 3vgz_A Uncharacterized protein 99.9 3.5E-21 1.2E-25 209.6 33.8 275 341-651 37-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 8.4E-22 2.9E-26 236.2 31.2 317 454-944 28-433 (706)
141 2ojh_A Uncharacterized protein 99.9 1.2E-21 4E-26 207.3 25.6 257 362-651 17-293 (297)
142 3u4y_A Uncharacterized protein 99.9 9.9E-21 3.4E-25 204.0 32.0 277 544-944 3-302 (331)
143 1pby_B Quinohemoprotein amine 99.9 2E-20 6.9E-25 202.0 32.4 300 509-915 2-321 (337)
144 1ri6_A Putative isomerase YBHE 99.9 2.9E-20 1E-24 201.3 33.3 306 510-928 7-335 (343)
145 1ri6_A Putative isomerase YBHE 99.9 2.8E-20 9.7E-25 201.4 32.9 273 356-659 4-307 (343)
146 2ojh_A Uncharacterized protein 99.9 8E-21 2.7E-25 200.8 27.2 254 562-937 20-293 (297)
147 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.9E-24 197.6 33.6 269 406-696 40-332 (353)
148 1pby_B Quinohemoprotein amine 99.9 5.7E-20 1.9E-24 198.5 26.9 267 359-661 3-311 (337)
149 3o4h_A Acylamino-acid-releasin 99.9 5.2E-20 1.8E-24 214.9 26.8 270 345-659 22-314 (582)
150 3hfq_A Uncharacterized protein 99.8 8.4E-19 2.9E-23 190.2 30.6 285 553-944 5-315 (347)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 6.1E-19 2.1E-23 195.9 29.8 259 345-615 37-332 (434)
152 1z68_A Fibroblast activation p 99.8 2.9E-20 1E-24 223.2 20.6 310 349-694 20-426 (719)
153 1z68_A Fibroblast activation p 99.8 3.2E-19 1.1E-23 214.1 28.3 236 411-659 20-345 (719)
154 1jmx_B Amine dehydrogenase; ox 99.8 8.2E-19 2.8E-23 190.4 28.1 294 506-914 9-335 (349)
155 4a5s_A Dipeptidyl peptidase 4 99.8 3.2E-18 1.1E-22 205.2 34.2 274 346-661 18-354 (740)
156 3o4h_A Acylamino-acid-releasin 99.8 3.9E-19 1.3E-23 207.5 25.3 261 406-696 21-300 (582)
157 3scy_A Hypothetical bacterial 99.8 1E-17 3.5E-22 182.7 33.7 300 549-945 12-336 (361)
158 3hfq_A Uncharacterized protein 99.8 3.1E-18 1.1E-22 185.6 29.3 269 327-621 20-324 (347)
159 3pe7_A Oligogalacturonate lyas 99.8 6.1E-18 2.1E-22 186.6 30.8 296 337-659 23-381 (388)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.1E-18 7.2E-23 187.2 26.2 275 349-661 4-326 (349)
161 3scy_A Hypothetical bacterial 99.8 5.5E-17 1.9E-21 176.8 36.1 271 359-659 15-336 (361)
162 3pe7_A Oligogalacturonate lyas 99.8 6.6E-18 2.2E-22 186.3 26.3 284 402-693 26-366 (388)
163 4a5s_A Dipeptidyl peptidase 4 99.8 1.9E-17 6.4E-22 198.5 31.0 366 452-943 17-446 (740)
164 2oiz_A Aromatic amine dehydrog 99.8 9.8E-17 3.3E-21 173.7 32.7 313 507-929 14-361 (361)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.8E-17 2.7E-21 175.6 27.8 246 406-661 39-342 (365)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 3.3E-17 1.1E-21 181.9 25.1 244 406-658 36-331 (434)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.5E-17 2.2E-21 176.2 26.9 270 564-944 14-339 (365)
168 3c5m_A Oligogalacturonate lyas 99.8 6.1E-17 2.1E-21 179.1 23.7 285 347-661 38-385 (396)
169 3c5m_A Oligogalacturonate lyas 99.7 2.5E-17 8.4E-22 182.3 19.9 320 523-944 15-380 (396)
170 2oiz_A Aromatic amine dehydrog 99.7 7.6E-16 2.6E-20 166.7 29.2 294 355-690 14-360 (361)
171 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.4E-20 178.0 31.9 207 446-658 18-270 (662)
172 3fvz_A Peptidyl-glycine alpha- 99.7 7.5E-15 2.6E-19 157.2 29.3 245 345-616 24-322 (329)
173 3azo_A Aminopeptidase; POP fam 99.7 2.8E-15 9.4E-20 178.0 27.7 287 341-661 20-370 (662)
174 1qks_A Cytochrome CD1 nitrite 99.7 4.1E-13 1.4E-17 152.5 43.1 331 467-913 169-547 (567)
175 2gop_A Trilobed protease; beta 99.7 1.4E-14 4.7E-19 156.8 28.4 262 345-659 15-330 (347)
176 1qks_A Cytochrome CD1 nitrite 99.7 1.5E-13 5E-18 156.2 37.8 317 507-944 166-536 (567)
177 1q7f_A NHL, brain tumor CG1071 99.7 4.6E-14 1.6E-18 147.9 31.2 244 404-660 27-280 (286)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1.9E-14 6.4E-19 154.0 28.6 244 406-660 23-322 (329)
179 1q7f_A NHL, brain tumor CG1071 99.7 6.3E-14 2.1E-18 146.9 31.9 245 343-617 28-281 (286)
180 2dg1_A DRP35, lactonase; beta 99.6 1.1E-13 3.7E-18 148.8 29.0 272 345-651 6-301 (333)
181 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.9E-18 164.0 32.8 249 403-662 121-416 (710)
182 2gop_A Trilobed protease; beta 99.6 4.5E-13 1.5E-17 144.8 31.6 255 517-917 42-342 (347)
183 2xdw_A Prolyl endopeptidase; a 99.6 4.3E-13 1.5E-17 159.9 33.4 301 548-944 81-412 (710)
184 3e5z_A Putative gluconolactona 99.6 5.9E-13 2E-17 140.2 29.6 246 338-619 21-289 (296)
185 2z2n_A Virginiamycin B lyase; 99.6 6.5E-12 2.2E-16 132.3 37.6 282 343-661 13-296 (299)
186 2bkl_A Prolyl endopeptidase; m 99.6 1.4E-13 4.9E-18 163.5 25.8 248 403-662 117-399 (695)
187 3no2_A Uncharacterized protein 99.6 7E-13 2.4E-17 136.9 26.9 243 359-636 7-272 (276)
188 3dsm_A Uncharacterized protein 99.6 4.2E-13 1.4E-17 143.2 25.6 270 365-661 15-302 (328)
189 3sjl_D Methylamine dehydrogena 99.6 2.8E-12 9.7E-17 135.8 31.4 312 504-926 40-384 (386)
190 3e5z_A Putative gluconolactona 99.6 8.3E-13 2.8E-17 139.0 27.3 237 402-661 23-287 (296)
191 2z2n_A Virginiamycin B lyase; 99.6 2.7E-11 9.1E-16 127.6 37.8 278 537-944 13-293 (299)
192 2bkl_A Prolyl endopeptidase; m 99.5 3.7E-13 1.3E-17 159.9 24.7 248 343-619 119-400 (695)
193 2dg1_A DRP35, lactonase; beta 99.5 7.8E-12 2.7E-16 134.1 32.1 238 340-607 40-301 (333)
194 4a2l_A BT_4663, two-component 99.5 1.7E-09 5.7E-14 130.6 55.5 486 345-943 88-611 (795)
195 1rwi_B Serine/threonine-protei 99.5 1.3E-12 4.4E-17 135.5 24.3 239 346-618 25-266 (270)
196 2qc5_A Streptogramin B lactona 99.5 5.5E-11 1.9E-15 125.2 36.8 279 343-658 18-298 (300)
197 3sjl_D Methylamine dehydrogena 99.5 2.5E-12 8.4E-17 136.3 26.0 282 351-669 39-371 (386)
198 1rwi_B Serine/threonine-protei 99.5 2.1E-12 7.1E-17 133.9 24.4 239 408-661 25-265 (270)
199 4a2l_A BT_4663, two-component 99.5 4.6E-09 1.6E-13 126.7 56.3 488 345-944 43-569 (795)
200 2mad_H Methylamine dehydrogena 99.5 6.6E-11 2.3E-15 127.8 35.9 275 352-662 28-352 (373)
201 1yr2_A Prolyl oligopeptidase; 99.5 2.8E-12 9.5E-17 153.5 26.9 246 404-662 160-443 (741)
202 2mad_H Methylamine dehydrogena 99.5 5.3E-11 1.8E-15 128.5 33.9 295 546-911 28-357 (373)
203 3no2_A Uncharacterized protein 99.5 9.3E-12 3.2E-16 128.5 25.3 215 417-648 4-231 (276)
204 2qc5_A Streptogramin B lactona 99.5 3E-10 1E-14 119.5 37.1 278 537-944 18-298 (300)
205 3dsm_A Uncharacterized protein 99.4 1.6E-11 5.6E-16 130.8 25.9 245 345-625 44-310 (328)
206 3c75_H MADH, methylamine dehyd 99.4 8.1E-11 2.8E-15 127.3 30.5 295 506-911 82-409 (426)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7E-11 2.4E-15 125.4 29.6 249 342-616 15-299 (314)
208 3v9f_A Two-component system se 99.4 1.4E-07 4.8E-12 113.5 60.8 497 345-944 19-566 (781)
209 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4.3E-16 147.8 24.9 247 343-619 161-444 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4.1E-15 123.6 27.5 245 405-661 16-300 (314)
211 3c75_H MADH, methylamine dehyd 99.4 4.6E-11 1.6E-15 129.2 24.0 277 354-667 82-408 (426)
212 3v9f_A Two-component system se 99.3 4.1E-07 1.4E-11 109.4 56.5 495 345-943 66-608 (781)
213 3g4e_A Regucalcin; six bladed 99.3 1.5E-09 5.2E-14 113.8 29.1 228 344-605 12-261 (297)
214 3hrp_A Uncharacterized protein 99.3 7.1E-10 2.4E-14 121.5 27.5 238 345-614 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.3 7E-10 2.4E-14 131.2 28.8 250 343-620 127-409 (693)
216 3hrp_A Uncharacterized protein 99.3 1.4E-09 4.9E-14 119.1 28.4 238 407-658 131-408 (409)
217 3g4e_A Regucalcin; six bladed 99.3 2.4E-09 8.1E-14 112.3 28.7 229 405-650 11-262 (297)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 3.7E-09 1.3E-13 112.4 30.1 225 346-606 50-292 (326)
219 3iuj_A Prolyl endopeptidase; h 99.3 3.4E-10 1.2E-14 133.9 24.3 244 404-662 126-407 (693)
220 2qe8_A Uncharacterized protein 99.3 3.3E-10 1.1E-14 121.6 21.9 271 345-652 17-313 (343)
221 1kb0_A Quinohemoprotein alcoho 99.3 1.8E-09 6.2E-14 126.3 29.9 323 509-932 78-536 (677)
222 1mda_H Methylamine dehydrogena 99.3 6.9E-10 2.4E-14 118.1 23.7 284 565-925 47-366 (368)
223 3dr2_A Exported gluconolactona 99.2 1.2E-09 4.3E-14 115.0 25.5 238 338-613 38-303 (305)
224 1yiq_A Quinohemoprotein alcoho 99.2 1E-09 3.5E-14 128.6 26.5 79 852-932 455-534 (689)
225 1xip_A Nucleoporin NUP159; bet 99.2 2.3E-10 7.9E-15 121.9 18.3 183 346-558 39-233 (388)
226 2qe8_A Uncharacterized protein 99.2 1.2E-09 4.2E-14 117.1 24.2 120 539-661 17-155 (343)
227 3dr2_A Exported gluconolactona 99.2 3.3E-09 1.1E-13 111.7 25.1 235 402-654 40-301 (305)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 1.7E-08 5.7E-13 107.3 30.0 223 408-650 50-292 (326)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.1 4.5E-08 1.5E-12 106.6 31.4 309 509-943 54-375 (376)
230 1mda_H Methylamine dehydrogena 99.1 1.6E-09 5.4E-14 115.3 19.0 267 358-669 33-354 (368)
231 1xip_A Nucleoporin NUP159; bet 99.1 1.1E-09 3.9E-14 116.6 17.7 174 408-604 39-232 (388)
232 3s94_A LRP-6, low-density lipo 99.1 9.6E-06 3.3E-10 93.2 51.0 459 342-906 37-553 (619)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1E-07 3.5E-12 103.7 32.6 184 467-661 55-259 (376)
234 1yiq_A Quinohemoprotein alcoho 99.1 9.6E-09 3.3E-13 120.4 25.8 306 360-694 73-534 (689)
235 4a0p_A LRP6, LRP-6, low-densit 99.1 6.1E-05 2.1E-09 86.6 55.5 466 343-911 35-556 (628)
236 3hxj_A Pyrrolo-quinoline quino 99.1 6.5E-09 2.2E-13 111.0 20.1 291 510-944 32-322 (330)
237 1fwx_A Nitrous oxide reductase 99.0 8.9E-09 3E-13 113.5 20.7 258 549-934 100-406 (595)
238 3s94_A LRP-6, low-density lipo 99.0 3.3E-05 1.1E-09 88.7 51.6 470 426-944 16-508 (619)
239 1kb0_A Quinohemoprotein alcoho 99.0 2.6E-08 8.8E-13 116.5 25.7 307 360-693 80-535 (677)
240 2ece_A 462AA long hypothetical 99.0 3.8E-08 1.3E-12 104.6 23.4 239 351-604 88-399 (462)
241 3hxj_A Pyrrolo-quinoline quino 99.0 2.9E-08 9.9E-13 105.9 22.3 266 344-660 59-324 (330)
242 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00016 5.5E-09 83.1 53.7 486 358-944 8-506 (628)
243 1npe_A Nidogen, entactin; glyc 98.9 1.4E-06 4.9E-11 89.3 32.1 222 407-642 36-263 (267)
244 2hz6_A Endoplasmic reticulum t 98.9 5.7E-10 2E-14 120.7 6.4 189 417-625 8-201 (369)
245 1kv9_A Type II quinohemoprotei 98.9 3.5E-07 1.2E-11 106.8 30.1 136 509-652 67-252 (668)
246 2ece_A 462AA long hypothetical 98.9 5E-07 1.7E-11 96.1 25.6 199 458-660 88-352 (462)
247 2hz6_A Endoplasmic reticulum t 98.8 1.3E-09 4.5E-14 117.8 3.3 257 355-659 8-278 (369)
248 1npe_A Nidogen, entactin; glyc 98.8 1.2E-05 4E-10 82.4 32.8 256 419-689 2-262 (267)
249 1w6s_A Methanol dehydrogenase 98.8 6.6E-06 2.3E-10 93.7 33.0 112 509-626 63-201 (599)
250 1fwx_A Nitrous oxide reductase 98.7 3.5E-07 1.2E-11 101.0 19.6 229 462-697 100-407 (595)
251 2ad6_A Methanol dehydrogenase 98.7 3.5E-06 1.2E-10 96.2 27.9 110 509-626 63-195 (571)
252 1flg_A Protein (quinoprotein e 98.7 5.8E-05 2E-09 86.1 37.3 377 468-931 71-544 (582)
253 2iwa_A Glutamine cyclotransfer 98.6 5.2E-06 1.8E-10 83.0 22.7 205 336-574 10-238 (266)
254 1kv9_A Type II quinohemoprotei 98.6 1.1E-05 3.7E-10 94.2 28.2 281 360-664 69-492 (668)
255 2iwa_A Glutamine cyclotransfer 98.5 3.7E-05 1.3E-09 76.9 25.7 195 453-661 22-238 (266)
256 2xe4_A Oligopeptidase B; hydro 98.5 1.5E-05 5E-10 94.8 27.0 247 346-619 175-461 (751)
257 1k3i_A Galactose oxidase precu 98.5 4.9E-06 1.7E-10 97.4 22.3 277 349-649 190-530 (656)
258 3nol_A Glutamine cyclotransfer 98.5 1E-05 3.6E-10 79.6 20.5 183 453-650 44-245 (262)
259 2p4o_A Hypothetical protein; p 98.5 5.5E-05 1.9E-09 79.1 27.5 227 407-650 32-278 (306)
260 3ei3_A DNA damage-binding prot 98.5 0.0024 8.1E-08 78.5 45.2 226 407-650 514-757 (1158)
261 2fp8_A Strictosidine synthase; 98.5 3.2E-05 1.1E-09 81.7 24.8 241 408-661 20-314 (322)
262 1w6s_A Methanol dehydrogenase 98.4 4.1E-05 1.4E-09 87.2 26.4 307 360-693 65-531 (599)
263 2fp8_A Strictosidine synthase; 98.4 4.4E-05 1.5E-09 80.6 25.2 254 346-616 20-313 (322)
264 3ei3_A DNA damage-binding prot 98.4 0.0065 2.2E-07 74.6 47.3 291 343-661 552-914 (1158)
265 2p4o_A Hypothetical protein; p 98.4 0.00015 5E-09 75.8 28.8 237 335-607 22-279 (306)
266 3nol_A Glutamine cyclotransfer 98.4 2E-05 6.9E-10 77.6 20.3 189 336-557 32-243 (262)
267 1flg_A Protein (quinoprotein e 98.4 0.0011 3.7E-08 75.6 37.5 206 418-627 68-366 (582)
268 2xbg_A YCF48-like protein; pho 98.4 0.0014 4.6E-08 69.0 35.6 279 344-658 35-320 (327)
269 3nok_A Glutaminyl cyclase; bet 98.4 3.2E-05 1.1E-09 76.1 21.0 182 407-605 55-254 (268)
270 3nok_A Glutaminyl cyclase; bet 98.4 3.6E-05 1.2E-09 75.8 20.7 180 453-649 56-254 (268)
271 3v64_C Agrin; beta propeller, 98.4 0.00048 1.6E-08 73.2 31.3 247 345-624 34-283 (349)
272 3v64_C Agrin; beta propeller, 98.3 0.00047 1.6E-08 73.2 30.6 217 336-581 64-283 (349)
273 3v65_B Low-density lipoprotein 98.3 0.00036 1.2E-08 75.3 29.9 247 346-625 78-327 (386)
274 2ad6_A Methanol dehydrogenase 98.3 7.6E-05 2.6E-09 85.1 25.6 266 359-645 117-522 (571)
275 3ott_A Two-component system se 98.3 0.014 4.8E-07 69.5 53.0 486 344-937 62-578 (758)
276 3qqz_A Putative uncharacterize 98.3 0.0003 1E-08 69.8 26.5 199 344-570 26-250 (255)
277 3mbr_X Glutamine cyclotransfer 98.3 0.00017 5.8E-09 70.4 23.8 183 452-649 21-223 (243)
278 3mbr_X Glutamine cyclotransfer 98.3 0.00015 5E-09 70.9 23.2 184 406-605 20-223 (243)
279 1ijq_A LDL receptor, low-densi 98.3 0.0015 5E-08 68.4 32.4 231 420-661 3-239 (316)
280 3v65_B Low-density lipoprotein 98.3 0.00045 1.5E-08 74.6 29.2 228 326-582 97-327 (386)
281 1k3i_A Galactose oxidase precu 98.3 3.8E-05 1.3E-09 89.9 21.7 243 411-661 190-498 (656)
282 3ott_A Two-component system se 98.2 0.021 7.1E-07 68.0 53.7 489 344-943 21-542 (758)
283 1ijq_A LDL receptor, low-densi 98.2 0.0038 1.3E-07 65.2 34.2 230 366-624 9-246 (316)
284 3p5b_L Low density lipoprotein 98.2 0.0011 3.7E-08 71.9 28.8 231 327-582 94-329 (400)
285 3p5b_L Low density lipoprotein 98.1 0.0039 1.3E-07 67.5 32.8 232 420-662 85-322 (400)
286 3sov_A LRP-6, low-density lipo 98.1 0.0026 9E-08 66.3 29.6 238 358-625 6-247 (318)
287 2xe4_A Oligopeptidase B; hydro 98.1 0.00032 1.1E-08 83.3 24.6 246 403-661 169-459 (751)
288 3qqz_A Putative uncharacterize 98.1 0.0028 9.5E-08 62.9 27.1 206 446-658 21-251 (255)
289 3tc9_A Hypothetical hydrolase; 98.0 0.00062 2.1E-08 74.6 22.7 240 408-659 138-429 (430)
290 3m0c_C LDL receptor, low-densi 97.9 0.0028 9.6E-08 74.4 28.5 221 336-581 415-640 (791)
291 3sov_A LRP-6, low-density lipo 97.9 0.0037 1.3E-07 65.2 26.6 209 345-581 35-246 (318)
292 4hw6_A Hypothetical protein, I 97.9 0.0019 6.4E-08 70.7 25.2 239 408-659 140-432 (433)
293 3m0c_C LDL receptor, low-densi 97.9 0.0099 3.4E-07 69.8 32.5 230 420-661 397-633 (791)
294 2xbg_A YCF48-like protein; pho 97.9 0.031 1.1E-06 58.4 33.5 262 407-693 36-308 (327)
295 3amr_A 3-phytase; beta-propell 97.8 0.0046 1.6E-07 63.6 24.3 185 467-659 42-262 (355)
296 3kya_A Putative phosphatase; s 97.8 0.0053 1.8E-07 67.1 26.1 244 408-661 140-476 (496)
297 3tc9_A Hypothetical hydrolase; 97.8 0.0045 1.5E-07 67.7 25.6 155 345-527 137-301 (430)
298 4hw6_A Hypothetical protein, I 97.7 0.0052 1.8E-07 67.2 24.9 236 345-614 139-431 (433)
299 2xzh_A Clathrin heavy chain 1; 97.7 0.05 1.7E-06 54.7 31.8 252 563-939 48-325 (365)
300 2xzh_A Clathrin heavy chain 1; 97.7 0.052 1.8E-06 54.6 29.0 238 349-618 71-334 (365)
301 1bpo_A Protein (clathrin); cla 97.7 0.083 2.8E-06 55.4 33.1 252 563-939 47-324 (494)
302 3kya_A Putative phosphatase; s 97.6 0.029 9.9E-07 61.3 27.6 162 346-527 140-341 (496)
303 3amr_A 3-phytase; beta-propell 97.6 0.02 6.7E-07 59.0 24.3 199 417-626 39-274 (355)
304 2p9w_A MAL S 1 allergenic prot 97.6 0.013 4.5E-07 59.7 22.6 164 346-528 14-216 (334)
305 1n7d_A LDL receptor, low-densi 97.5 0.00055 1.9E-08 80.0 13.4 225 427-661 385-615 (699)
306 1n7d_A LDL receptor, low-densi 97.5 0.00066 2.3E-08 79.3 14.0 211 407-625 406-623 (699)
307 1bpo_A Protein (clathrin); cla 97.5 0.1 3.5E-06 54.8 27.8 239 349-619 70-334 (494)
308 2ism_A Putative oxidoreductase 97.2 0.05 1.7E-06 57.5 23.5 108 344-471 30-152 (352)
309 3a9g_A Putative uncharacterize 97.2 0.1 3.5E-06 55.1 25.5 232 344-604 28-330 (354)
310 2xtc_A F-box-like/WD repeat-co 97.1 0.00049 1.7E-08 53.7 4.8 36 1-36 1-36 (90)
311 2p9w_A MAL S 1 allergenic prot 97.1 0.33 1.1E-05 49.5 26.9 166 447-617 8-216 (334)
312 2ism_A Putative oxidoreductase 97.1 0.05 1.7E-06 57.5 21.6 229 407-648 31-333 (352)
313 2nxp_A Transcription initiatio 97.1 0.00082 2.8E-08 60.7 6.5 101 49-149 26-136 (156)
314 3a9g_A Putative uncharacterize 97.1 0.16 5.3E-06 53.7 25.3 230 407-648 29-330 (354)
315 2xn4_A Kelch-like protein 2; s 97.0 0.066 2.2E-06 55.2 21.4 230 418-661 16-277 (302)
316 2vpj_A Kelch-like protein 12; 96.9 0.046 1.6E-06 56.4 19.8 230 417-661 14-279 (301)
317 2j49_A Transcription initiatio 96.9 0.00034 1.1E-08 62.1 2.4 100 49-149 9-118 (148)
318 2vpj_A Kelch-like protein 12; 96.9 0.065 2.2E-06 55.2 20.4 191 417-619 62-281 (301)
319 3ii7_A Kelch-like protein 7; p 96.9 0.095 3.3E-06 54.1 21.7 228 419-661 13-273 (306)
320 2j4b_A TAF5, transcription ini 96.9 0.00048 1.7E-08 60.5 3.2 100 49-149 7-116 (138)
321 3ii7_A Kelch-like protein 7; p 96.8 0.25 8.6E-06 50.9 24.2 233 357-621 12-277 (306)
322 2g8s_A Glucose/sorbosone dehyd 96.7 0.25 8.5E-06 52.1 23.6 109 345-471 18-147 (353)
323 2g8s_A Glucose/sorbosone dehyd 96.7 0.55 1.9E-05 49.4 26.3 232 408-647 19-340 (353)
324 3das_A Putative oxidoreductase 96.6 0.83 2.8E-05 47.4 28.4 74 587-660 33-116 (347)
325 3sre_A PON1, serum paraoxonase 96.6 0.19 6.5E-06 52.4 20.8 187 454-649 52-286 (355)
326 3sbq_A Nitrous-oxide reductase 96.6 0.78 2.7E-05 49.8 25.3 99 832-933 323-452 (638)
327 2xn4_A Kelch-like protein 2; s 96.5 0.13 4.5E-06 52.9 19.0 192 417-620 61-280 (302)
328 4asc_A Kelch repeat and BTB do 96.5 0.27 9.4E-06 50.9 21.6 227 421-661 8-278 (315)
329 3sre_A PON1, serum paraoxonase 96.4 1.1 3.9E-05 46.6 32.1 206 408-624 51-308 (355)
330 1xi4_A Clathrin heavy chain; a 96.3 0.32 1.1E-05 59.1 22.7 96 563-668 47-142 (1630)
331 2woz_A Kelch repeat and BTB do 96.2 0.47 1.6E-05 49.1 21.7 229 420-661 18-288 (318)
332 1zgk_A Kelch-like ECH-associat 96.2 0.19 6.6E-06 51.8 18.5 231 416-661 23-288 (308)
333 3pbp_A Nucleoporin NUP82; beta 96.1 0.22 7.4E-06 52.4 17.7 135 517-657 40-209 (452)
334 3s25_A Hypothetical 7-bladed b 96.1 0.27 9.1E-06 50.3 18.6 201 459-693 21-238 (302)
335 1uuj_A Platelet-activating fac 96.1 0.0037 1.3E-07 48.4 3.2 55 5-59 10-66 (88)
336 3pbp_A Nucleoporin NUP82; beta 96.0 0.091 3.1E-06 55.2 14.1 126 346-481 67-209 (452)
337 3das_A Putative oxidoreductase 96.0 1.9 6.4E-05 44.7 25.5 114 343-472 30-158 (347)
338 4asc_A Kelch repeat and BTB do 95.9 1.2 4.1E-05 45.8 23.3 232 359-622 7-283 (315)
339 1xi4_A Clathrin heavy chain; a 95.8 0.4 1.4E-05 58.4 20.0 240 349-620 70-335 (1630)
340 2woz_A Kelch repeat and BTB do 95.7 1 3.4E-05 46.6 21.6 197 414-622 53-293 (318)
341 1zgk_A Kelch-like ECH-associat 95.7 1.1 3.7E-05 46.1 21.3 193 417-621 70-292 (308)
342 2uvk_A YJHT; unknown function, 95.6 0.32 1.1E-05 51.4 17.4 141 518-662 168-344 (357)
343 3sbq_A Nitrous-oxide reductase 95.4 2.5 8.5E-05 46.0 22.3 280 355-649 68-454 (638)
344 1tl2_A L10, protein (tachylect 94.6 0.83 2.9E-05 43.3 14.5 100 834-939 90-203 (236)
345 1cru_A Protein (soluble quinop 94.5 6.5 0.00022 42.7 28.3 113 344-471 26-162 (454)
346 2wg3_C Hedgehog-interacting pr 94.2 3.3 0.00011 45.0 20.7 29 631-659 15-44 (463)
347 2uvk_A YJHT; unknown function, 94.2 1.5 5.3E-05 46.0 18.0 60 565-627 286-353 (357)
348 2be1_A Serine/threonine-protei 94.1 0.88 3E-05 46.9 15.0 191 419-621 11-236 (339)
349 1tl2_A L10, protein (tachylect 93.7 0.23 8E-06 47.0 8.7 100 833-939 42-156 (236)
350 3s25_A Hypothetical 7-bladed b 93.6 6.9 0.00024 39.7 29.4 204 412-648 58-280 (302)
351 2be1_A Serine/threonine-protei 93.6 0.15 5.3E-06 52.6 8.2 190 467-663 12-234 (339)
352 2zwa_A Leucine carboxyl methyl 93.3 2.3 7.7E-05 49.4 18.5 199 416-620 396-639 (695)
353 1cru_A Protein (soluble quinop 90.8 21 0.00071 38.7 30.4 109 495-605 27-163 (454)
354 4hvt_A Ritya.17583.B, post-pro 89.6 34 0.0012 39.4 25.9 251 347-618 131-431 (711)
355 2wg3_C Hedgehog-interacting pr 88.8 29 0.00099 37.5 26.8 55 408-462 15-79 (463)
356 3qhy_B Beta-lactamase inhibito 88.5 21 0.00073 35.6 18.9 220 408-660 25-246 (282)
357 3qhy_B Beta-lactamase inhibito 87.5 25 0.00084 35.1 20.9 221 346-617 25-247 (282)
358 4hvt_A Ritya.17583.B, post-pro 87.2 48 0.0016 38.1 23.5 244 408-659 130-429 (711)
359 2zwa_A Leucine carboxyl methyl 85.9 9.6 0.00033 44.1 15.4 113 549-661 451-578 (695)
360 3b7f_A Glycosyl hydrolase, BNR 83.3 48 0.0017 34.8 30.2 236 406-654 54-366 (394)
361 3b7f_A Glycosyl hydrolase, BNR 80.3 62 0.0021 34.0 27.6 223 407-638 115-391 (394)
362 4gq2_M Nucleoporin NUP120; bet 71.8 95 0.0033 37.2 18.0 37 874-911 237-273 (950)
363 3q6k_A 43.2 kDa salivary prote 69.8 1.1E+02 0.0037 31.8 19.4 164 477-645 125-339 (381)
364 3kci_A Probable E3 ubiquitin-p 66.8 1.3E+02 0.0044 31.5 23.7 298 509-900 11-341 (389)
365 1zi0_A DNA gyrase subunit A; b 66.1 1.1E+02 0.0039 30.6 26.8 191 416-615 1-225 (307)
366 2d68_A FOP, FGFR1OP; alpha hel 61.3 8.7 0.0003 29.5 3.9 29 7-35 20-48 (82)
367 3q6k_A 43.2 kDa salivary prote 60.0 1.7E+02 0.0057 30.5 22.6 194 346-555 88-340 (381)
368 3no0_A DNA gyrase subunit A; D 57.6 1.5E+02 0.0051 29.2 16.6 155 763-944 22-194 (276)
369 4gq2_M Nucleoporin NUP120; bet 55.5 99 0.0034 37.0 13.9 39 496-536 237-275 (950)
370 1sqj_A OXG-RCBH, oligoxylogluc 55.0 3E+02 0.01 32.0 25.1 157 344-517 14-190 (789)
371 3uc1_A DNA gyrase subunit A; D 52.3 2E+02 0.0069 29.1 22.6 232 419-658 4-277 (327)
372 3l6v_A GYRA, DNA gyrase subuni 51.7 2.2E+02 0.0076 29.4 25.6 149 415-572 4-179 (370)
373 2wpv_A GET4, UPF0363 protein Y 51.0 76 0.0026 31.9 10.0 110 38-186 17-127 (312)
374 2lni_A Stress-induced-phosphop 49.2 1E+02 0.0034 25.2 9.7 90 6-101 17-111 (133)
375 4gco_A Protein STI-1; structur 47.8 63 0.0021 27.1 7.9 98 14-118 22-124 (126)
376 2zux_A YESW protein; beta-prop 45.8 3.4E+02 0.011 29.8 24.9 185 454-659 328-531 (591)
377 4fhn_B Nucleoporin NUP120; pro 44.6 1.5E+02 0.0051 36.4 13.5 36 875-911 240-275 (1139)
378 3mkr_A Coatomer subunit epsilo 41.6 1.7E+02 0.0058 28.9 11.3 85 6-101 65-157 (291)
379 1elw_A TPR1-domain of HOP; HOP 39.7 1.4E+02 0.0047 23.5 9.7 89 7-101 6-99 (118)
380 3qou_A Protein YBBN; thioredox 38.7 1.2E+02 0.004 30.0 9.6 106 9-121 121-231 (287)
381 3zwu_A Alkaline phosphatase PH 37.2 1.1E+02 0.0038 34.0 9.5 64 540-603 477-548 (592)
382 4a9v_A PHOX; hydrolase, beta-p 36.8 1.3E+02 0.0046 33.1 9.8 65 540-604 477-549 (592)
383 3lpz_A GET4 (YOR164C homolog); 36.5 1.6E+02 0.0054 29.9 9.7 109 38-185 16-128 (336)
384 3zwu_A Alkaline phosphatase PH 35.6 76 0.0026 35.4 7.9 59 588-647 478-548 (592)
385 4a9v_A PHOX; hydrolase, beta-p 35.4 1.1E+02 0.0038 33.7 8.9 60 832-892 476-549 (592)
386 4ga2_A E3 SUMO-protein ligase 33.0 98 0.0034 26.7 7.0 72 43-121 40-111 (150)
387 2zux_A YESW protein; beta-prop 32.2 5.4E+02 0.018 28.2 26.1 178 450-640 177-424 (591)
388 4gcn_A Protein STI-1; structur 32.1 1.2E+02 0.004 25.3 7.1 102 14-117 17-124 (127)
389 2zuy_A YESX protein; beta-prop 31.4 5.7E+02 0.019 28.2 24.7 54 587-640 369-428 (620)
390 2vgx_A Chaperone SYCD; alterna 31.1 2.1E+02 0.0073 24.4 9.0 85 9-100 25-115 (148)
391 1na0_A Designed protein CTPR3; 30.1 2E+02 0.007 22.7 9.2 87 9-101 13-104 (125)
392 2xz2_A CSTF-50, isoform B; RNA 29.8 62 0.0021 23.4 3.8 33 3-35 14-46 (66)
393 4fhn_B Nucleoporin NUP120; pro 29.6 2.2E+02 0.0076 34.9 11.6 35 631-666 239-273 (1139)
394 4asv_A Small glutamine-rich te 28.9 36 0.0012 26.6 2.6 19 1-19 15-33 (92)
395 1wp5_A Topoisomerase IV; broke 28.7 4.6E+02 0.016 26.3 25.2 193 416-616 3-225 (323)
396 2xcb_A PCRH, regulatory protei 28.4 2.3E+02 0.008 23.7 8.7 50 10-59 23-77 (142)
397 3mkr_A Coatomer subunit epsilo 27.8 1.5E+02 0.005 29.4 8.1 99 14-120 110-211 (291)
398 3upv_A Heat shock protein STI1 27.3 1.9E+02 0.0064 23.5 7.7 87 8-100 7-98 (126)
399 3sz7_A HSC70 cochaperone (SGT) 26.8 1.7E+02 0.0059 25.3 7.7 86 9-100 15-105 (164)
400 2dba_A Smooth muscle cell asso 26.8 2.7E+02 0.0092 23.0 10.4 89 7-101 30-126 (148)
401 2k9m_A RNA polymerase sigma fa 26.7 56 0.0019 27.9 3.9 47 4-61 20-67 (130)
402 1oyi_A Double-stranded RNA-bin 26.4 35 0.0012 26.3 2.2 30 6-37 16-45 (82)
403 3f7f_A Nucleoporin NUP120; nuc 25.4 82 0.0028 35.8 5.9 38 873-913 222-259 (729)
404 1vk8_A Hypothetical protein TM 25.0 7 0.00024 31.9 -2.0 37 23-60 36-72 (106)
405 2qfc_A PLCR protein; TPR, HTH, 23.9 3.3E+02 0.011 26.5 10.0 94 7-101 77-182 (293)
406 2pl2_A Hypothetical conserved 23.8 2.9E+02 0.0098 25.5 9.0 112 4-120 4-129 (217)
407 1kdl_A YOPD protein; yersinia, 23.5 48 0.0016 18.6 1.7 15 4-18 3-17 (26)
408 3u4t_A TPR repeat-containing p 23.4 3.6E+02 0.012 25.5 10.1 108 8-119 6-118 (272)
409 2kck_A TPR repeat; tetratricop 23.3 2.1E+02 0.0072 22.0 7.1 85 13-101 14-104 (112)
410 1suu_A DNA gyrase subunit A; t 23.2 5.6E+02 0.019 25.5 27.3 193 416-616 6-231 (312)
411 3hym_B Cell division cycle pro 22.8 3.7E+02 0.013 26.2 10.4 104 9-119 93-203 (330)
412 3ct5_A Morphogenesis protein 1 22.2 66 0.0023 28.6 3.6 33 5-37 14-51 (159)
413 4g26_A Pentatricopeptide repea 22.2 6.3E+02 0.022 27.2 12.5 64 31-99 133-200 (501)
414 2yhc_A BAMD, UPF0169 lipoprote 21.8 1.9E+02 0.0064 27.0 7.3 99 5-104 4-126 (225)
415 3q49_B STIP1 homology and U bo 21.7 3.3E+02 0.011 22.2 8.3 88 7-100 11-103 (137)
416 3as5_A MAMA; tetratricopeptide 21.6 3.9E+02 0.013 22.9 9.3 103 10-119 13-120 (186)
417 1hxi_A PEX5, peroxisome target 21.2 1.6E+02 0.0054 24.1 5.9 50 10-59 22-76 (121)
418 2ho1_A Type 4 fimbrial biogene 20.9 5E+02 0.017 24.0 11.1 14 46-59 117-130 (252)
419 4gof_A Small glutamine-rich te 20.8 53 0.0018 22.6 2.0 15 5-19 2-16 (52)
420 4ga2_A E3 SUMO-protein ligase 20.4 1.9E+02 0.0063 24.8 6.4 100 15-121 41-146 (150)
421 2fo7_A Synthetic consensus TPR 20.1 3.3E+02 0.011 21.6 9.3 103 10-119 6-113 (136)
422 1elr_A TPR2A-domain of HOP; HO 20.0 3.3E+02 0.011 21.6 8.5 95 8-102 7-107 (131)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-63 Score=585.05 Aligned_cols=520 Identities=21% Similarity=0.331 Sum_probs=433.0
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+ ..+.+|.+.|++++|+|||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~-------------------~~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLL-------------------QTLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEE-------------------EEEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEE-------------------EEEeCCCCCEEEEEECCCC
Confidence 44569999999999999995 999999999999995 55544 3378999999999999999
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe--------
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-------- 490 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-------- 490 (945)
++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.........
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCcee
Confidence 999999999999999964 44444 6889999999999999999 899999999999999444333332
Q ss_pred ---------------------------------cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 491 ---------------------------------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 491 ---------------------------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
..|...|.++++++ ++.++++++.|+.|++||. +++....+..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 220 (577)
T 2ymu_A 144 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGH 220 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred eeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecC
Confidence 33455666666655 5678999999999999995 45667778888
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
...|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|+.|++|+. ++
T Consensus 221 ~~~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~ 293 (577)
T 2ymu_A 221 SSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NG 293 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TS
T ss_pred CCCEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CC
Confidence 999999999999999999885 899999996 5677888888876 7999999999999999999999999997 45
Q ss_pred eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCC
Q 002264 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
+.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+.... .+..+.++ ...+.+++|+|+|+.++++..
T Consensus 294 ~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~-----~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 294 QLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGH-----SSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp CEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCC-----SSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCC-----CCCEEEEEECCCCCEEEEEeC
Confidence 666666655 448999999999999999999999999998654 23344433 346889999999999999888
Q ss_pred CCCccccccCCCCCCCcccC-----CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEE
Q 002264 698 PANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (945)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 772 (945)
.+..+++..... ....+.+ ....++++++.+++++.|+.|++|+... .... .+.. |...|.+++|
T Consensus 365 dg~v~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----~~~~--~~~~---~~~~v~~~~~ 434 (577)
T 2ymu_A 365 DKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQ--TLTG---HSSSVWGVAF 434 (577)
T ss_dssp TSEEEEEETTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----CEEE--EEEC---CSSCEEEEEE
T ss_pred CCEEEEEcCCCC-EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----CEEE--EecC---CCCCeEEEEE
Confidence 777666543221 1111111 1235789999999999999999999642 1112 2333 8899999999
Q ss_pred ecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-C
Q 002264 773 TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G 851 (945)
Q Consensus 773 s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d 851 (945)
+||+++|++++.|+.|++|+... +. +. .+.+ |...|++++|+||+++||+++ |
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~-------~~----------------~~-~~~~--~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG-------QL----------------LQ-TLTG--HSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS-------CE----------------EE-EEEC--CSSCEEEEEECTTSCEEEEEETT
T ss_pred CCCCCEEEEEcCCCEEEEEECCC-------CE----------------EE-EEcC--CCCCEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999997421 11 11 1334 889999999999999999998 8
Q ss_pred CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceee
Q 002264 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 852 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
++|++||. +++++.++.+|...|++++|+| ++++||+|+.||.|++||. +++++..+.+|.+.|++++|+|||++|+
T Consensus 489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 89999995 6788999999999999999999 9999999999999999995 6889999999999999999999999999
Q ss_pred eecCCceEEEEe
Q 002264 932 SSGADAQVTLCV 943 (945)
Q Consensus 932 s~~~Dg~i~vWd 943 (945)
|++.|++|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.1e-63 Score=581.24 Aligned_cols=539 Identities=14% Similarity=0.188 Sum_probs=427.0
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|++... .......+|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.... ..+.+|.
T Consensus 43 l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSL-TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFS 103 (611)
T ss_dssp EEETTCS-SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSS
T ss_pred EecCCCc-ccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee-----------------EeecccC
Confidence 8887642 23333446999999999999999 599999999999999976543311 2367899
Q ss_pred ccEEEEEEcCCCCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-
Q 002264 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
+.|.+++|+|+|++||+++.+ +.|++|| .++... .+.+|...|.+++|+|++.. .|++|+.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEEC
Confidence 999999999999999999875 3677776 455444 67899999999999999874 699999999999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcCCCCEEE
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~ 554 (945)
..++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+. .|...|.+++|+|++++|+
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 88888899999999999999987 66899999999999999999888877763 6888999999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCc--ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+++. |+.|++||+.+++.+..+..+... ....+.| ++..+++++.||.+++|+..++.....+..|. ..|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~--~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHN--KAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCS--SCE
T ss_pred EEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC--CCE
Confidence 9986 999999999999988887654321 2334455 67899999999999999999998777776554 489
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (945)
.+++|+|+|++|++++.|++|++||+.++. ....+. ..+...+.+++|++++. ++++...+..+++........
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~----~~h~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP----DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS----CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeecc----cCCcceEEEEEECCCCc-EEEEEcCCceEEeecCCcccc
Confidence 999999999999999999999999998873 333221 12345688999998774 455544444444322211100
Q ss_pred C------ccc--CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 713 P------IIN--GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 713 ~------~~~--~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
. .+. .....++++++.++++ .++.+++|+.. ....+. +...+.+++|+|||++|++++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~~------~~~~~~------~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG------KLTEVP------ISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT------EEEEEE------CSSCEEEEEECTTSCEEEEEET
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEE-eCceEEEEeCC------ceeeee------cCCCceEEEEeCCCCEEEEeCC
Confidence 0 000 1122356777666666 45778888732 122221 5668999999999999999999
Q ss_pred cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC-c
Q 002264 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-F 862 (945)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~-~ 862 (945)
|++|++|++.... .. ... ..+ |...|++++|||||++||+++ |++|++|++.+ +
T Consensus 469 D~~v~lwd~~~~~------~~--------------~~~--~~~--h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 469 DSKVHVYKLSGAS------VS--------------EVK--TIV--HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp TSEEEEEEEETTE------EE--------------EEE--EEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred CCeEEEEEccCCc------ee--------------eee--ccC--CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 9999999874321 00 000 122 889999999999999999999 89999999987 6
Q ss_pred eEEEE--ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce-EE-EEecCC-CcceeEEEecCCcceeeeecCCc
Q 002264 863 KVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VK-SKLKGH-QKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 863 ~~~~~--~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~-~~-~~l~~h-~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
++... +.+|...|++++|+| ++++||+|+.|++|++||+.++. .+ ..+.+| .+.|++++|+||++ |+|++.|+
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~ 602 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS 602 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred ceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence 66554 345999999999999 99999999999999999999865 33 678899 89999999999998 99999999
Q ss_pred eEEEEecC
Q 002264 938 QVTLCVEH 945 (945)
Q Consensus 938 ~i~vWdl~ 945 (945)
+|++||++
T Consensus 603 ~i~lW~~~ 610 (611)
T 1nr0_A 603 NIKFWNVP 610 (611)
T ss_dssp CEEEEECC
T ss_pred CEEEEecc
Confidence 99999974
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-60 Score=558.07 Aligned_cols=510 Identities=14% Similarity=0.214 Sum_probs=414.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+.+.+.+++|+|||++ ||+++ +++|+||++.+++.. ..+.+|...|++++|||+|++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~-------------------~~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDT-------------------EIYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCC-------------------EEECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccC-------------------eEecCCCCceEEEEECCCCcEEE
Confidence 4678899999999994 88887 679999999877654 34789999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEeCCCceEEEecCCCCCEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
+|+.||+|+|||+.+++... ...+.+|.++|.+++|+|+++ .|++++.+ +.|++|| .++....+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999997654432 225778999999999999999 78877765 3688887 4566678899999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
+++|+|+. ...|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++...
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 99998853 236999999999999999888888888999999999999999999999985 9999999999999888
Q ss_pred Eec-------cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC-CCCccEEEEcCCCCEEEEEECC
Q 002264 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 579 ~~~-------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+. +|.. .+.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 874 5655 899999999999999999999999999999999888765421 123445556 78899999999
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
+.+++|+..++ .....+.+|. ..|.+++|+|+|+.+ +
T Consensus 304 ~~i~~~~~~~~-~~~~~~~gh~-----~~v~~l~~spdg~~l-------------------------------------~ 340 (611)
T 1nr0_A 304 GFINFVNPELG-SIDQVRYGHN-----KAITALSSSADGKTL-------------------------------------F 340 (611)
T ss_dssp CCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEE-------------------------------------E
T ss_pred CcEEEEeCCCC-CcceEEcCCC-----CCEEEEEEeCCCCEE-------------------------------------E
Confidence 99999999877 4455555544 468999999998877 5
Q ss_pred ccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCC-----------
Q 002264 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN----------- 799 (945)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~----------- 799 (945)
+++.|++|++|++... ..... + ..+|...|.+++|++++ .+++++.|+.+++|++......
T Consensus 341 s~s~D~~v~~Wd~~~~----~~~~~-~--~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 341 SADAEGHINSWDISTG----ISNRV-F--PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp EEETTSCEEEEETTTC----CEEEC-S--SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred EEeCCCcEEEEECCCC----ceeee-c--ccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 8888899999998742 22111 1 12488999999999776 5889999999999997654321
Q ss_pred --------CCCceeee---eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE--E
Q 002264 800 --------PSGKATAS---AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--M 865 (945)
Q Consensus 800 --------~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~--~ 865 (945)
+++..... ..+.+|+ .++ ... + .|...+.+++|+|||++||+|+ |++|++||+.++.. .
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~-~---~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~ 485 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTE-V---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 485 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEE-E---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eee-e---ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee
Confidence 12211111 1234454 222 111 1 1567899999999999999999 89999999987653 3
Q ss_pred EEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc-ceEEEE--ecCCCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 866 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSK--LKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 866 ~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~-~~~~~~--l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
.. .+|...|++++|+| ++++||+++.|++|++|++.+ ++++.. +.+|...|++++|+|||++|+|++.|++|+||
T Consensus 486 ~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 486 KT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp EE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 44 67999999999999 999999999999999999998 666554 34599999999999999999999999999999
Q ss_pred ecC
Q 002264 943 VEH 945 (945)
Q Consensus 943 dl~ 945 (945)
|+.
T Consensus 564 ~~~ 566 (611)
T 1nr0_A 564 NMN 566 (611)
T ss_dssp ETT
T ss_pred ECC
Confidence 973
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.4e-58 Score=585.11 Aligned_cols=559 Identities=13% Similarity=0.164 Sum_probs=464.6
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSD 668 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTT
T ss_pred EEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecC
Confidence 34456999999999999999 59999999999999999987663 36789999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
|++||+|+.||.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|...
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence 9999999999999999999987766 677899999999999965544899999999999999 889999999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------------CCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
|.+++|+| ++.++++++.||.|++||+.++.....+... ...+.+++|+|+|+.+++++ +
T Consensus 746 v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~ 818 (1249)
T 3sfz_A 746 VNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----K 818 (1249)
T ss_dssp EEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----T
T ss_pred EEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----C
Confidence 99999987 5689999999999999999987766554322 22678899999999999886 7
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
+.+.+||+.++.....+...+...+.+++|+|++..+++++.||.|++||+.++..+..+..|. ..|.+++|+|+|++
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSS 896 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSE
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCE
Confidence 8899999999998888774444589999999999999999999999999999999988887664 48999999999999
Q ss_pred EEEEECCCcEEEEECCCCccc-------------------------------cccccCCccccccCcceeeeecccccce
Q 002264 644 LAVTTADNGFKILANAIGLRS-------------------------------LRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~-------------------------------~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
+++++.||.|++|++.+.... .....+.........+.+++|+|+|+.+
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 999999999999997532100 0000111111223568899999999999
Q ss_pred eccCCCCCccccccCCCCCCCcccC-----CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 693 VSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
+++...+...++..........+.+ ....++++++.+++++.|+.|++|++..... .... .|...|
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~------~~~~---~~~~~v 1047 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQ---AHQETV 1047 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE------ECCB---CCSSCE
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce------EEEe---cCCCcE
Confidence 9988877776644433332222221 2345789999999999999999999875221 1222 388999
Q ss_pred EEEEEecCCCeEEEeeecCeEEEEeecCCC----------------CCCCCceeee----eccccccCCCcccccccccC
Q 002264 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNE----------------QNPSGKATAS----AVPQHWLPSSGLLMANDVAG 827 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~----------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ 827 (945)
.+++|+|++. +++++.||.+++||+.... ..+++...+. ..+++|+..++..... +.+
T Consensus 1048 ~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~ 1125 (1249)
T 3sfz_A 1048 KDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKG 1125 (1249)
T ss_dssp EEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCC
T ss_pred EEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-ecc
Confidence 9999999775 7889999999999986532 1334444333 2678999998886554 555
Q ss_pred CCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEe---------cCCCCCeeEEEeecCCCceEEEeecCceE
Q 002264 828 VNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---------MSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (945)
Q Consensus 828 ~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~---------~~h~~~i~~l~~s~~~~~~lasg~~dg~v 897 (945)
|...|++++|||||++||+++ ||.|++||+.+++.+..+ .+|.+.|++++|+| ++++|++++ |.|
T Consensus 1126 --h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~s~~--g~v 1200 (1249)
T 3sfz_A 1126 --HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYL 1200 (1249)
T ss_dssp --CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT-TSSCEEEES--SSE
T ss_pred --CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECC-CCCEEEECC--CeE
Confidence 899999999999999999999 899999999999887765 57889999999999 899999885 899
Q ss_pred EEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 898 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++||+.+++.+..+.+|...|++++|+|||++|++++.||.|++|++
T Consensus 1201 ~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 99999999999999999999999999999999999999999999997
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5e-57 Score=529.89 Aligned_cols=482 Identities=21% Similarity=0.337 Sum_probs=404.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.|.||++.|++++|||||++||+|+.|+.|+|||. +++.++ ++.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~v 83 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKL 83 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEE
Confidence 458999999999999999999999999999999995 555554 7889999999999999999 8999999999999
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-----------------------------
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----------------------------- 530 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------- 530 (945)
||.+++.+..+.+|...|.+++|+| ++++|++++.|+.+++|+......
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EECCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 9988999999999999999999987 668999999999999998643211
Q ss_pred -----------eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCE
Q 002264 531 -----------RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 531 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945)
......+...+.++.++|+++++++++. ++.|++||. +++.+..+.+|.. .+.+++|+|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~~~~~~~~-~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQT 235 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSC
T ss_pred ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEEEEecCCC-CEEEEEECCCCCE
Confidence 1122334557888999999999999885 899999995 5777888888876 7999999999999
Q ss_pred EEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCc
Q 002264 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (945)
+++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|++|+... +....+.+|. ..
T Consensus 236 l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~-----~~ 305 (577)
T 2ymu_A 236 IASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHS-----SS 305 (577)
T ss_dssp EEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCS-----SC
T ss_pred EEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCC-----CC
Confidence 999999999999996 456677776554 4899999999999999999999999999753 3445555543 46
Q ss_pred ceeeeecccccceeccCCCCCccccccCCCCCCCcccC-----CCCCccCCCCCccccCCCCCCcccccceeecCCccee
Q 002264 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL 754 (945)
Q Consensus 680 i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 754 (945)
+.+++|+|+++.++++..++..+++....... ..+.+ ....++|+++.+++++.|+.+++|+... ....
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----~~~~- 379 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQ- 379 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----CEEE-
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----CEEE-
Confidence 88999999999999988877776654332211 11111 1245789999999999999999999642 1111
Q ss_pred eecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCce
Q 002264 755 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834 (945)
Q Consensus 755 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 834 (945)
.+.. |...|.+++|+|+|++|++++.|+.|++|+.. ++. +. .+.+ |...|
T Consensus 380 -~~~~---~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-------~~~----------------~~-~~~~--~~~~v 429 (577)
T 2ymu_A 380 -TLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQL----------------LQ-TLTG--HSSSV 429 (577)
T ss_dssp -EEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-------CCE----------------EE-EEEC--CSSCE
T ss_pred -EecC---CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-------CCE----------------EE-EecC--CCCCe
Confidence 2333 88899999999999999999999999999732 111 11 1334 88999
Q ss_pred eEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC
Q 002264 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (945)
Q Consensus 835 ~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 913 (945)
++++|+||+++|++++ |++|++||. +++.+..+.+|...|++++|+| ++++||+++.|+.|++|| .+++++..+.+
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~-~~~~~~~~~~~ 506 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG 506 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEE-TTSCEEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEc-CCCCEEEEEeC
Confidence 9999999999999998 899999996 5678889999999999999999 999999999999999999 47889999999
Q ss_pred CCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 914 HQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 914 h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|...|++++|+|||++|++++.||.|+|||.
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 9999999999999999999999999999996
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-56 Score=527.01 Aligned_cols=532 Identities=15% Similarity=0.220 Sum_probs=426.6
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC----CcccccccccccccccCcccccccccCCCcc-EEEEEEcC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~s~ 416 (945)
.|.+.|++++|+|+|++ ||+|+ ++.|+|||+.++ +.. ..+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~-------------------~~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPV-------------------VQFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSE-------------------EEECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccc-------------------eEEecCCCceEEEEEECc
Confidence 47889999999999994 88877 899999999877 433 347889999 99999999
Q ss_pred --CCCEEEEEECCCcEEEEEccCCc-----ccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEeCCCc
Q 002264 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (945)
Q Consensus 417 --~g~~las~~~dg~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd~~~~ 485 (945)
++++||+|+.||.|++||+.++. .......+..|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1122336778999999999999999 88888887 6888888 677
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC---eEEEEEEcCC-CCEEEEEeecCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSKD 561 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~~~d 561 (945)
.+..+.+|...|.+++|+|.+. ..+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999987532 3899999999999999999888888888888 9999999999 999999985
Q ss_pred CCceEEEEeCCCCceeeEe-c---cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC--CCCccEE
Q 002264 562 GDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRL 635 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v 635 (945)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.||.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 899999999999999988 5 5555 89999999 999999999999999999999999988876521 2356788
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCC--CCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR--PSP 713 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 713 (945)
.|+ ++.++++++.||.|++||+.++ +....+.+| ..++.+++| |+ ++++..++..+++...... ...
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~-----~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGH-----NKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCC-----SSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCS
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCC-----CCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccC
Confidence 886 8999999999999999999876 555555554 346899999 88 6676666666654433111 000
Q ss_pred cccCCCCCccCCCCCccccCCCCCCcccccceeecCCccee--------------------eecCC-----CCCCccceE
Q 002264 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL--------------------VTMPE-----STDTSSKVV 768 (945)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------------------~~~~~-----~~~~~~~v~ 768 (945)
.+ ....+ +++..+++++.|+.+++|++........... ..... ...+...+.
T Consensus 374 ~v--~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 374 LI--VSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CE--EEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred ce--EEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 00 11123 5578899999999999999875432110000 00000 001344555
Q ss_pred EEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE
Q 002264 769 RLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (945)
Q Consensus 769 ~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la 847 (945)
+++|+ ++.+++++. ||.+++|++ .++......+.+ |...|++++|+||+++|+
T Consensus 451 ~~~~~--~~~l~~~~~~d~~i~~~~~----------------------~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~ 504 (615)
T 1pgu_A 451 AVSLS--QNYVAVGLEEGNTIQVFKL----------------------SDLEVSFDLKTP--LRAKPSYISISPSETYIA 504 (615)
T ss_dssp EEEEC--SSEEEEEETTTSCEEEEET----------------------TEEEEEEECSSC--CSSCEEEEEECTTSSEEE
T ss_pred EEEEc--CCEEEEeecCCCeEEEEEC----------------------CCccccccccCC--ccCceEEEEECCCCCEEE
Confidence 66666 555666665 666666654 333322122444 889999999999999999
Q ss_pred ecC-CCeEEEEeccCceEEEEecC-CCCCeeEEEeecC---------CCceEEEeecCceEEEEecccc-eEEEEecCCC
Q 002264 848 SAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915 (945)
Q Consensus 848 ~~s-d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~~---------~~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~ 915 (945)
+++ |+.|++||+.+++.+..+.+ |...|++++|+|. ++++||+|+.||.|++||+.++ +++..+.+|.
T Consensus 505 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~ 584 (615)
T 1pgu_A 505 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584 (615)
T ss_dssp EEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred EcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc
Confidence 998 89999999999999999998 9999999999993 5789999999999999999998 7899999999
Q ss_pred cceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 916 KRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 916 ~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+.|++++|+||++ |++++.||+|++||++
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred cceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9999999999999 9999999999999984
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-53 Score=512.62 Aligned_cols=559 Identities=12% Similarity=0.104 Sum_probs=402.5
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 45568999999999999999 69999999999999987655432 224788999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE---------
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--------- 487 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~--------- 487 (945)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 343 778999999999999 899999999999999 555543
Q ss_pred --EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------------------CCeEEEEEEc
Q 002264 488 --FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLYS 547 (945)
Q Consensus 488 --~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s 547 (945)
..+.+|.+.|.+++|+|. ++..+++|+.||.| +||+++......+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234678999999999985 34689999999999 9999998877776654 3579999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCceeeE--ec---cc------------cCcceEEEEEc----CCC-CEEEEEEC
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFD----TTQ-NHFLAVGE 605 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~~~~~~~~----~~~-~~l~~~~~ 605 (945)
|+|++|++++. |+.|++||+++++.+.. +. .| ....+..++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999986 99999999999887653 21 12 12268899995 443 45666766
Q ss_pred C-----CcEEEEECC------------------CCeeEEEeecCCCCCCccEEEEcC----------CCCEEEEEECCCc
Q 002264 606 D-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADNG 652 (945)
Q Consensus 606 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~sp----------~g~~l~~~~~dg~ 652 (945)
| +.+.+|++. +.+....+... +...|.++.+.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22334444321 223678888765 3457889999999
Q ss_pred EEEEECCCCccccccccCC-ccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC-----CCCCccCCC
Q 002264 653 FKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMD 726 (945)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 726 (945)
|++|++.++.........+ ....+...|.+++|++.+..+..+..... ... ...+.+ ....++|++
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~-----~~~---~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA-----QNK---DYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT-----BCC---CCSCCCSBCCCCCCCCCSEE
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc-----cCC---CCcccCCcCCCCcccccccC
Confidence 9999997764333222111 12223356888888765433221110000 000 011221 124568899
Q ss_pred CCccccCCCCCCcccccceeecCC-cceeeecC--CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC---
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSG-QCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP--- 800 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~--- 800 (945)
+.+++++.|++|++||+....... ......+. -..+|...|.+++|+|||+.|++++.||+|+||++.......
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 999999999999999997642111 00111111 001488899999999999999999999999999997653110
Q ss_pred -----CCceeeee-cc--------cc-----ccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEecc
Q 002264 801 -----SGKATASA-VP--------QH-----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (945)
Q Consensus 801 -----~~~~~~~~-~~--------~~-----~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~ 860 (945)
........ .+ .+ .....+......+.+ |.+.|++++||||| +||+|+ |++|+|||+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 00000000 00 00 000001111223555 99999999999999 999999 8999999998
Q ss_pred CceEEE-----Eec-CCCCCeeEEEee-----cCC---CceEEEeecCceEEEEec---ccceEEEEecCCC-----cce
Q 002264 861 TFKVMT-----TFM-SPPPASTFLAFH-----PQD---NNIIAIGTEDSTIHIYNV---RVDEVKSKLKGHQ-----KRI 918 (945)
Q Consensus 861 ~~~~~~-----~~~-~h~~~i~~l~~s-----~~~---~~~lasg~~dg~v~vwd~---~~~~~~~~l~~h~-----~~V 918 (945)
++..+. .+. +|.+.|++|+|+ | | +++|++|+.|++|++||+ .+|+++..+.+|. ++|
T Consensus 605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v 683 (902)
T 2oaj_A 605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI 683 (902)
T ss_dssp TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred CCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCce
Confidence 877654 243 899999999999 8 6 489999999999999999 8899988888774 778
Q ss_pred eEEE-ec----------------------CCcceeeeecCCceEEEEecC
Q 002264 919 TGLA-FS----------------------TSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 919 ~~l~-~s----------------------~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.+++ |+ +++..|+++ |..|+||+++
T Consensus 684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~ 731 (902)
T 2oaj_A 684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLG 731 (902)
T ss_dssp CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTT
T ss_pred EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCc
Confidence 8887 65 566666655 7789999974
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-53 Score=546.55 Aligned_cols=514 Identities=15% Similarity=0.226 Sum_probs=434.2
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|++++|||+|++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|+.|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEE
Confidence 3477899999999999999999999999999999999987666 6789999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+++.+..+.+|...|.+++|++..++.++++|+.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99 89999999999999999999998777789999999999999999999999999999999999999999999999986
Q ss_pred cCCCCceEEEEeCCCCceeeEecccc------------CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++.....+..
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~- 837 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT- 837 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-
T ss_pred ----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-
Confidence 8999999999988776654321 12467789999999999887 68999999999988887763
Q ss_pred CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccccc
Q 002264 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~ 706 (945)
.+...|.+++|+|++.++++++.||.|++|++.++ .....+.+| ..+|.+++|+|+|+.++++..++..+++..
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h-----~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGH-----LSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCC-----ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 33458999999999999999999999999999987 455555554 346999999999999999887777666431
Q ss_pred CCCC-----------------------------CCC----------cc---cCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 707 SPVR-----------------------------PSP----------II---NGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 707 ~~~~-----------------------------~~~----------~~---~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.... ... .. ......++++++.+++++.+|.|++|++.
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~ 991 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence 1000 000 00 01123578899999999999999999987
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC---------------CCCCceee---
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---------------NPSGKATA--- 806 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~---------------~~~~~~~~--- 806 (945)
... . ...+.. |...|.+++|+|+|+++++++.||.|++|++..... .+++....
T Consensus 992 ~~~----~-~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A 992 NNR----V-FSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp TTS----C-EEECCC---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred CCc----e-eeeccc---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence 422 1 122333 889999999999999999999999999999875321 12222221
Q ss_pred eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCC
Q 002264 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885 (945)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~ 885 (945)
...+.+||..+++.... +.+ |...|++++|+||++++++++ |++|++||+.+++++.++.+|.+.|++++|+| ++
T Consensus 1064 dg~v~vwd~~~~~~~~~-~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~-dg 1139 (1249)
T 3sfz_A 1064 DGTVKVWNVITGRIERD-FTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DG 1139 (1249)
T ss_dssp SSEEEEEETTTTCCCEE-EEC--CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECS-SS
T ss_pred CCcEEEEECCCCceeEE-Ecc--cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECC-CC
Confidence 12578999998886654 555 899999999999999999999 89999999999999999999999999999999 99
Q ss_pred ceEEEeecCceEEEEecccceEEEEe---------cCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 886 NIIAIGTEDSTIHIYNVRVDEVKSKL---------KGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 886 ~~lasg~~dg~v~vwd~~~~~~~~~l---------~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++||+|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||+
T Consensus 1140 ~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~ 1205 (1249)
T 3sfz_A 1140 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNV 1205 (1249)
T ss_dssp SEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCS
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEEC
Confidence 99999999999999999999877665 67999999999999999999886 89999996
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-51 Score=495.29 Aligned_cols=526 Identities=10% Similarity=0.064 Sum_probs=387.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|+... ......+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+.. +. |.
T Consensus 43 lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~ 98 (902)
T 2oaj_A 43 IYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VP 98 (902)
T ss_dssp EECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CS
T ss_pred EEeCCC--cEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE-------------------Ec-CC
Confidence 787654 34455567899999999999 88 599999999999999998876532 22 66
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccc-c-------eeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-H-------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~-~-------~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+.|++++|+|++++|++|+.||.|++||+.+++.... . ..+.+|.++|.+++|+|++.. .+++|+.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-
Confidence 7899999999999999999999999999998764210 0 235689999999999997533 78999999999
Q ss_pred EEe-CCCceEEEecCC------------------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec----
Q 002264 479 VWE-LSGRKLFNFEGH------------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---- 535 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 535 (945)
+|| .+++.+..+..| ...|.+++|+| +|.+|++++.||+|++||+++++......
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 999 888888888765 47799999987 56899999999999999999877654311
Q ss_pred -C-------------CCCeEEEEEEc----CCC-CEEEEEeecCC-CCceEEEEeCC------------------CCcee
Q 002264 536 -A-------------PGHWCTTMLYS----ADG-SRLFSCGTSKD-GDSFLVEWNES------------------EGTIK 577 (945)
Q Consensus 536 -~-------------~~~~i~~~~~s----~~~-~~l~~~~~~~d-~~~~i~iwd~~------------------~~~~~ 577 (945)
. +...|.+++|+ |++ ..+++++.+.+ ....+.+|++. +++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 23479999995 454 34555543211 12478888842 22333
Q ss_pred eEeccccCcceEEEEEcC----------CCCEEEEEECCCcEEEEECCCCeeEEE-------------------e-----
Q 002264 578 RTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDNVNILTS-------------------T----- 623 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------~----- 623 (945)
+.+.......+..+.+.+ +...+++++.||.|++|++.++..... +
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~ 414 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN 414 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH
T ss_pred EEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH
Confidence 444321223566676654 344789999999999999977743221 0
Q ss_pred ---------------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc--cccCC----ccccccCccee
Q 002264 624 ---------------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR--AVENP----PFEALRTPIES 682 (945)
Q Consensus 624 ---------------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~----~~~~~~~~i~~ 682 (945)
...++...+.+++|+|++++|++|+.|++|++||+.++. ... .+... ....+...|.+
T Consensus 415 ~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~-~~~~~~~~~~l~~~~~~~h~~~V~s 493 (902)
T 2oaj_A 415 KLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD-IQDNASFEVNLSRTLNKAKELAVDK 493 (902)
T ss_dssp HHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT-TTTTBCEEEEHHHHTTCSSSCCEEE
T ss_pred HHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc-ccCCceEEeechhhcCCCCCCceeE
Confidence 011233356677889999999999999999999998872 210 01000 00134457999
Q ss_pred eeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC------------
Q 002264 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG------------ 750 (945)
Q Consensus 683 v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~------------ 750 (945)
++|+|||+.|| +|+.|++|++|++.......
T Consensus 494 vafspdg~~LA-------------------------------------sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 494 ISFAAETLELA-------------------------------------VSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp EEEETTTTEEE-------------------------------------EEETTSCEEEEEEEECCC--------------
T ss_pred EEecCCCCeEE-------------------------------------EEecCcEEEEEEecCccccCccccCCCcccce
Confidence 99999998885 66666777777765431100
Q ss_pred ---------------------------cce-eeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCC
Q 002264 751 ---------------------------QCR-LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (945)
Q Consensus 751 ---------------------------~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~ 802 (945)
.+. ...+.+ |...|++++||||| +|++++.|++|++||+....
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~----- 607 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA---NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA----- 607 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC---CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE-----
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEc---CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe-----
Confidence 001 123333 89999999999999 99999999999999864221
Q ss_pred ceeeeeccccccCCCccccccccc-CCCcCCceeEEeec-----CCC---ceEEecC-CCeEEEEec---cCceEEEEec
Q 002264 803 KATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALS-----KND---SYVMSAT-GGKISLFNM---MTFKVMTTFM 869 (945)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~~l~~s-----~dg---~~la~~s-d~~i~iwd~---~~~~~~~~~~ 869 (945)
..... .. ..+. + |...|++++|| ||| ++|++|+ |++|++||+ .+|+...++.
T Consensus 608 -~~~~~----------~~--~~~~~g--h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~ 672 (902)
T 2oaj_A 608 -IIYME----------NI--REISGA--QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLM 672 (902)
T ss_dssp -EEEEE----------EG--GGTCSS--CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEE
T ss_pred -EEEEe----------eh--hHhccc--cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEec
Confidence 11000 00 1132 4 89999999999 886 8999999 899999999 7888888887
Q ss_pred CCC-----CCeeEEE-ee----------------------cCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEE
Q 002264 870 SPP-----PASTFLA-FH----------------------PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (945)
Q Consensus 870 ~h~-----~~i~~l~-~s----------------------~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 921 (945)
+|. +.|.++. |+ + ++.+|+++ +..|+||++.++++.....+|...+.++
T Consensus 673 ~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v 749 (902)
T 2oaj_A 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGL 749 (902)
T ss_dssp EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEE
T ss_pred CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC-CeEEEEEe--ccceEEEeCccccceeeEcccceeeeEE
Confidence 764 6787777 66 4 55566655 7789999999999998887788778887
Q ss_pred ---E------ecCCcceeeeecCCceEEEEecC
Q 002264 922 ---A------FSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 922 ---~------~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
. |++++..|++++.||+|++|+++
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p 782 (902)
T 2oaj_A 750 SYISTVEKNNDRKNLTVIITLEINGHLRVFTIP 782 (902)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEeccccccccCceEEEEEeCCCcEEEEECc
Confidence 6 78999999999999999999985
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.1e-50 Score=476.35 Aligned_cols=500 Identities=14% Similarity=0.166 Sum_probs=392.9
Q ss_pred cccCCCC--C-cceEEeecCCCc-EEEEEEeC--CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccc
Q 002264 327 TWSLDDL--P-RTVAVSLHQGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (945)
Q Consensus 327 ~~~~~~~--~-~~~~~~~~h~~~-V~~v~fsp--~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (945)
+|++... + .......+|.+. |++++|+| +|+ +||+|+.||+|+|||+.+++....... ....
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------~~~~ 110 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-----------NVKS 110 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE-----------EEEE
T ss_pred EEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccc-----------cccc
Confidence 8988753 1 334444559999 99999999 999 599999999999999976521100000 0113
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
.+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|...|.+++|+|+++. .+++++.|+.
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~ 184 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGS 184 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTE
T ss_pred hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCc
Confidence 466799999999999999999999987 6888888 444444 67789999999999999975 6899999999
Q ss_pred EEEEe-CCCceEEEecCCCC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-c---CCCCeEEEEEEcC
Q 002264 477 IKVWE-LSGRKLFNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D---APGHWCTTMLYSA 548 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~~~~s~ 548 (945)
|++|| .+++.+..+.+|.. .|.+++|+|+ ++.+|++++.||.|++||+.+++....+ . .+...|.+++|+
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred EEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-
Confidence 99999 88889999999999 9999999874 1689999999999999999999888888 5 788899999999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc---CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+++++++++. ++.|++||+.+++.+..+..+. ...+..+.++ +++.+++++.||.|++||+.+++.+..+..
T Consensus 263 ~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 263 DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 9999999985 8999999999999998887762 2256667775 889999999999999999999988888876
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
+. ..|.+++| |+ +++++.||.|++|++. .+. . .+...|.+++| +++..++++...+...++.
T Consensus 338 ~~--~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~-----~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 338 HN--KGITALTV-NP---LISGSYDGRIMEWSSS----SMH--Q-----DHSNLIVSLDN-SKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CS--SCEEEEET-TT---TEEEETTSCEEETTTT----EEE--C-----CCCSCEEEEEC-CSTTCCEEEETTTEEEETT
T ss_pred CC--CCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--C-----cccCceEEEEE-CCCcEEEEEeCCCCEEEEE
Confidence 54 48999999 88 9999999999999986 111 1 23345777777 5555666555544444322
Q ss_pred cCC----------------------------------CCCCCccc--C--CCCCccCCCCCccccCC-CCCCccccccee
Q 002264 706 SSP----------------------------------VRPSPIIN--G--VDPTSRSMDKPRTVDDV-TDKPKPWQLAEI 746 (945)
Q Consensus 706 ~~~----------------------------------~~~~~~~~--~--~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~ 746 (945)
... ......+. . ....+. ++.+++++. |+.+++|++...
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCc
Confidence 110 00000000 0 001111 778899998 999999999863
Q ss_pred ecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccccc
Q 002264 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (945)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (945)
... ...+.. |...|.+++|+|+|++|++++.||.|++|++.. ++.+.....
T Consensus 478 ~~~----~~~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~----------------------~~~~~~~~~ 528 (615)
T 1pgu_A 478 EVS----FDLKTP---LRAKPSYISISPSETYIAAGDVMGKILLYDLQS----------------------REVKTSRWA 528 (615)
T ss_dssp EEE----EECSSC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------TEEEECCSC
T ss_pred ccc----ccccCC---ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC----------------------CcceeEeec
Confidence 221 122333 889999999999999999999999999998642 222221111
Q ss_pred CCCcCCceeEEeecC----------CCceEEecC-CCeEEEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecC
Q 002264 827 GVNLEEAVPCIALSK----------NDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (945)
Q Consensus 827 ~~~~~~~i~~l~~s~----------dg~~la~~s-d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d 894 (945)
. |...|++++|+| ++++||+++ |+.|++||+.++ +++..+.+|...|++++|+| +++ |++++.|
T Consensus 529 ~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d 604 (615)
T 1pgu_A 529 F--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGAD 604 (615)
T ss_dssp C--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETT
T ss_pred C--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCC
Confidence 1 788999999999 999999999 899999999998 78899999999999999999 888 9999999
Q ss_pred ceEEEEeccc
Q 002264 895 STIHIYNVRV 904 (945)
Q Consensus 895 g~v~vwd~~~ 904 (945)
|.|++|++.+
T Consensus 605 ~~v~iw~~~~ 614 (615)
T 1pgu_A 605 ACIKRWNVVL 614 (615)
T ss_dssp SCEEEEEEC-
T ss_pred ceEEEEeeec
Confidence 9999999875
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-48 Score=477.81 Aligned_cols=476 Identities=14% Similarity=0.183 Sum_probs=385.1
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++
T Consensus 9 ~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGT
T ss_pred eecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCC
Confidence 345999999999999999 59999999999999999887653 3678999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPV 497 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v 497 (945)
+|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++|| .++ .....+.+|...|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 99999999999999999987665 6778999999999999999 899999999999999 555 6778889999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+++|+|. ++..+++++.||.|++||+..+.....+..+. ..+.+++|+| ++.++++++. ++.|++||+.++
T Consensus 144 ~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~ 218 (814)
T 3mkq_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTK 218 (814)
T ss_dssp EEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTT
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCC
Confidence 99999873 45799999999999999998888777776655 7899999999 9999999885 899999999999
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC--EEEEEECCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~l~~~~~dg~ 652 (945)
+.+..+.+|.. .+.+++|+|+++.+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+|. ++++++ ++.
T Consensus 219 ~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~-~~~ 294 (814)
T 3mkq_A 219 SCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF-DNG 294 (814)
T ss_dssp EEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE-TTE
T ss_pred cEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe-CCC
Confidence 99999988876 799999999999999999999999999999999988876654 899999999987 455554 667
Q ss_pred EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcccc
Q 002264 653 FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVD 732 (945)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 732 (945)
+.+|++..+ ...+.++|+|+.++++.......- +...
T Consensus 295 ~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~-------------------------~~~~ 331 (814)
T 3mkq_A 295 FTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASD-------------------------IFTA 331 (814)
T ss_dssp EEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTC-------------------------EEEE
T ss_pred EEEEEcCCC------------------CceeEECCCCCEEEECccccccee-------------------------eeee
Confidence 889987654 224678888888765433211000 0000
Q ss_pred CCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecccc
Q 002264 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (945)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 812 (945)
... ..|++...... ......+.. +...+.+++|+|+|+++++++ +|.+.+|++...
T Consensus 332 ~~~---~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~---------------- 387 (814)
T 3mkq_A 332 VIR---GNEEVEQDEPL-SLQTKELGS---VDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW---------------- 387 (814)
T ss_dssp ECC---SCCCCCSSSCB-CCCCEEECC---CSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT----------------
T ss_pred ecc---cccccccCccc-eeeeecCCC---CccCCceeEECCCCCEEEEec-CCEEEEEECccc----------------
Confidence 000 01111110000 011111122 566789999999999888887 899999974210
Q ss_pred ccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCC---ceE
Q 002264 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN---NII 888 (945)
Q Consensus 813 ~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~---~~l 888 (945)
... +.+.+.+++|+|||+++|+++ +++|++|+ .+.+|...+.++.|+| ++ .+|
T Consensus 388 ------------~~~--~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~-dg~~~~~l 444 (814)
T 3mkq_A 388 ------------RNK--AFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAI-DRLFSGAL 444 (814)
T ss_dssp ------------EEE--EEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCC-CEEECSSS
T ss_pred ------------ccc--CCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCc-cceecceE
Confidence 001 456788999999999999998 88999995 3456788899999999 77 588
Q ss_pred EEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeee------cCCceEEEE
Q 002264 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS------GADAQVTLC 942 (945)
Q Consensus 889 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~------~~Dg~i~vW 942 (945)
++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|
T Consensus 445 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 445 LGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 8899999999999999999999998865 89999999999999 777766665
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.6e-46 Score=413.12 Aligned_cols=285 Identities=21% Similarity=0.373 Sum_probs=263.3
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
..+|.++|++++|+|+++ +|++|+.||+|+|||+.+++.. ..+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~-------------------~~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFE-------------------RTLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCC-------------------EEECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEE-------------------EEEeccCCcEEEEEEcCCCC
Confidence 346889999999999999 5999999999999999988765 33788999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+|++|+.|++|++||+.+++.++ .+.+|...|.+++|+|+++ ++++|+.|++|++|| .++.++..+.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999887665 6789999999999999999 899999999999999 88999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC--------------------CCEEEEEee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGT 558 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~ 558 (945)
++++++ ++.++++|+.|++|++||+.+......+..|...|.+++|+|+ +.++++++.
T Consensus 239 ~~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 239 MVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EEEECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 999876 6689999999999999999999999899999999999999996 668888885
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|+.|++||++++..+..+.+|.. .+.+++|+|++.+|++|+.||.|++||+.+++++..+..|.. .|.+++|+
T Consensus 317 ----D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~ 389 (410)
T 1vyh_C 317 ----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFH 389 (410)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEEC
T ss_pred ----CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEc
Confidence 99999999999999999999877 899999999999999999999999999999999998887654 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEC
Q 002264 639 KEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~ 658 (945)
|++.+|++|+.||+|++|++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC-
T ss_pred CCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999986
No 13
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.6e-44 Score=440.18 Aligned_cols=441 Identities=15% Similarity=0.220 Sum_probs=360.6
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.+.+|.+.|.+++|+|+|++||+|+.||.|++||+.+++.+. .+.+|.++|.+++|+|+++ +|++|+.||.|++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 81 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 4578899999999999999999999999999999999987666 6778999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcC-CCCEEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~ 556 (945)
|| .+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||++++ .....+..+...|.+++|+| ++..++++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99 88999999999999999999987 5679999999999999999887 55567778889999999999 88899988
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+. ++.|++||+.++.....+..+....+..++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 160 ~~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 85 899999999999888888877755799999999 999999999999999999999999988876644 8999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCc
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (945)
++|+|+++++++++.||.|++||+.++ .....+..+. ..+.+++|+|+|..++
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~~~--------------------- 286 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGL-----ERSWCIATHPTGRKNY--------------------- 286 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSS-----SSEEEEEECTTCGGGE---------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCC-----CcEEEEEEccCCCceE---------------------
Confidence 999999999999999999999999887 4444444432 3688999999987531
Q ss_pred ccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE-EEEee
Q 002264 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ-KLWKW 793 (945)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i-~lw~~ 793 (945)
++.+.++.+.+|++.. ....+.++|+|+.+++++.+... .++.
T Consensus 287 ---------------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 330 (814)
T 3mkq_A 287 ---------------IASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFT- 330 (814)
T ss_dssp ---------------EEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEE-
T ss_pred ---------------EEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeee-
Confidence 2333345566666542 12346788899888877655321 0110
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccc---cccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecC
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMAN---DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS 870 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~ 870 (945)
......|+...+..... .+.. +...+.+++|+|||+++++++++.+.+|++......
T Consensus 331 -------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~----- 390 (814)
T 3mkq_A 331 -------------AVIRGNEEVEQDEPLSLQTKELGS--VDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK----- 390 (814)
T ss_dssp -------------EECCSCCCCCSSSCBCCCCEEECC--CSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-----
T ss_pred -------------eecccccccccCccceeeeecCCC--CccCCceeEECCCCCEEEEecCCEEEEEECcccccc-----
Confidence 00011233333332211 1222 567789999999999999999999999998755432
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCc---ceeeeecCCceEEEEecC
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL---NILVSSGADAQVTLCVEH 945 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~~~Dg~i~vWdl~ 945 (945)
+.+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+||| .+|++++.|++|++||+.
T Consensus 391 ~~~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 391 AFGKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp EEEECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred CCCceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECC
Confidence 235688999999 899999999999999996 345688899999999999 699999999999999973
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=355.86 Aligned_cols=286 Identities=16% Similarity=0.233 Sum_probs=259.6
Q ss_pred cCCCcEEEEEEeCC----CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 342 HQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 342 ~h~~~V~~v~fsp~----g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+|.+.|++++|+|+ +. +|++|+.|++|+||++.+++... ...+.+|...|.+++|+++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~-----------------~~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDL-----------------QWSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeee-----------------eeeeccCCCCEEEEEECCC
Confidence 59999999999985 45 69999999999999997765321 1237799999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+.++++|+.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999987665 6678889999999999999 899999999999999 888888999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
|.+++|+| ++++|++|+.||.|++||+++++....+..+...|.+++|+|++++|++++. |+.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcce
Confidence 99999977 6689999999999999999999988899999999999999999999999985 89999999999999
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
...+.+|.. .+.+++|+|++.+|++++.||.|++||+.+++++..+..+. ..|.+++|+|+|++|++++.||.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999887 79999999999999999999999999999999999887654 489999999999999999999999999
Q ss_pred ECC
Q 002264 657 ANA 659 (945)
Q Consensus 657 ~~~ 659 (945)
|+.
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 963
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.4e-40 Score=354.05 Aligned_cols=290 Identities=19% Similarity=0.284 Sum_probs=258.4
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
....+ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 106 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEEC
T ss_pred hheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEEC
Confidence 34444 5999999999999999 59999999999999998887653 266799999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.+|
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 9999999999999999999987642 233346779999999999998874 78999999999999 889999999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...|.+++|+| ++.++++|+.|+.|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||+++
T Consensus 184 ~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~ 257 (340)
T 1got_B 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRA 257 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred CCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCC
Confidence 99999999987 5689999999999999999999999999999999999999999999999985 89999999999
Q ss_pred CceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 574 GTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 574 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
++.+..+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++|+.|+.
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSC
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCCcc
Confidence 88877765332 2258899999999999999999999999999999988887665 48999999999999999999999
Q ss_pred EEEEE
Q 002264 653 FKILA 657 (945)
Q Consensus 653 i~iw~ 657 (945)
|++||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-39 Score=355.33 Aligned_cols=294 Identities=17% Similarity=0.247 Sum_probs=260.7
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
...+.+ +|.+.|+|++|+|+|+ +||+|+.||+|+|||..+++... .+..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEE
Confidence 334444 5999999999999998 59999999999999998876553 25568889999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcc---cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++|| .+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 123335678999999999999999 899999999999999 889999999
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.+|...|.+++++|.+++.+|++|+.||.|++||+++++....+..|...|.+++|+|++.+|++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998877889999999999999999999999999999999999999999999999986 89999999
Q ss_pred CCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 571 ESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 571 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
+++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcC
Confidence 99988777665433 2257889999999999999999999999999999888887654 48999999999999999999
Q ss_pred CCcEEEEE
Q 002264 650 DNGFKILA 657 (945)
Q Consensus 650 dg~i~iw~ 657 (945)
||+|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=351.58 Aligned_cols=293 Identities=15% Similarity=0.242 Sum_probs=258.0
Q ss_pred ceEEEecCCCCCEEEEEeeec--CCccEEEEEEcCCeEEEEEccCCCee--EEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 485 RKLFNFEGHEAPVYSICPHHK--ENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.....+.+|.+.|++++|++. .++.+|++|+.|++|++||+...... ..+.+|...|.+++|++++..+++++.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-- 100 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-- 100 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET--
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC--
Confidence 345667789999999999874 24679999999999999999876543 357788889999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|+
T Consensus 101 --D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spd 175 (321)
T 3ow8_A 101 --DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPD 175 (321)
T ss_dssp --TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTT
T ss_pred --CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCC
Confidence 99999999999999999887766 678899999999999999999999999999998888876654 7999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCC
Q 002264 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (945)
Q Consensus 641 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945)
|++|++++.||.|++||+.++. .+..
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~-~~~~----------------------------------------------------- 201 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGK-LLHT----------------------------------------------------- 201 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTE-EEEE-----------------------------------------------------
T ss_pred CCEEEEEcCCCeEEEEECCCCc-EEEE-----------------------------------------------------
Confidence 9999999999999999987551 0000
Q ss_pred CccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC
Q 002264 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (945)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~ 800 (945)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEE
Q 002264 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (945)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~ 879 (945)
+.+ |...|.+++|+|++++|++|+ |++|++||+.+++...++.+|...|.+++
T Consensus 202 ------------------------~~~--h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 202 ------------------------LEG--HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp ------------------------ECC--CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred ------------------------Ecc--cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 111 667788999999999999998 88999999999999999999999999999
Q ss_pred eecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
|+| ++.+|++|+.||+|+|||+.+++++..+.+|.+.|.+++|+|++++|++++.||+|+|||.|
T Consensus 256 ~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999 89999999999999999999999999999999999999999999999999999999999975
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-39 Score=349.43 Aligned_cols=295 Identities=21% Similarity=0.285 Sum_probs=256.4
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.+|.+.|++++|+|++..+|++|+.|++|++|++.+....... ....+.+|...|.+++|+|+|++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCCCCE
Confidence 3599999999999987447999999999999998654322100 11347899999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~ 500 (945)
|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||..+.++..+.+|...|.++
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEE
Confidence 9999999999999999987665 6789999999999999999 8999999999999998888999999999999999
Q ss_pred EeeecC----CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 501 CPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 501 ~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
++.|.. ++..+++++.|+.|++||++..+....+..|...|.+++|+|++++|++++. |+.|++||+.+++.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKKA 230 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 998743 3458999999999999999998888888999999999999999999999985 99999999999999
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC------CCCCCccEEEEcCCCCEEEEEECC
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+ .+...+.+++|+|||++|++|+.|
T Consensus 231 ~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 231 MYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 98887643 68999999999998888765 5999999988777766432 123468899999999999999999
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
|.|++|++.++
T Consensus 308 g~i~vWd~~t~ 318 (319)
T 3frx_A 308 NVIRVWQVMTA 318 (319)
T ss_dssp SCEEEEEEEEC
T ss_pred ceEEEEEEeec
Confidence 99999998754
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-39 Score=343.46 Aligned_cols=286 Identities=17% Similarity=0.290 Sum_probs=251.0
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.+|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (304)
T ss_dssp EEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred cCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCCCCE
Confidence 35999999999999999 59999999999999999887653 36679999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v~ 498 (945)
|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++|| .++ .....+.+|...|.
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence 9999999999999999987765 6789999999999999999 899999999999999 655 45677899999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
+++|+|. ++..|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. |+.|++||+++++
T Consensus 145 ~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (304)
T ss_dssp EEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTE
T ss_pred EEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCc
Confidence 9999875 45799999999999999998877766554 3456788999987 7789999985 9999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC--EEEEEECCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~l~~~~~dg~i 653 (945)
.+..+.+|.. .+..++|+|+++.|++|+.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++|+.| .+
T Consensus 220 ~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg~~~-g~ 295 (304)
T 2ynn_A 220 CVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGFDN-GF 295 (304)
T ss_dssp EEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEEETT-EE
T ss_pred cceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEecCC-ce
Confidence 9999999987 79999999999999999999999999999999999887654 3789999999875 57777655 57
Q ss_pred EEEECCC
Q 002264 654 KILANAI 660 (945)
Q Consensus 654 ~iw~~~~ 660 (945)
.+|++.+
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 7777754
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-39 Score=359.13 Aligned_cols=246 Identities=20% Similarity=0.322 Sum_probs=229.7
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.+|.++|++++|+|++.+|++|+.||+|++||+.+++..+ .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999987766 7889999999999999999 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+++++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++.....+..|...|.++.++|++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 78889999999999999999987 5579999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC--------------------CCEEEEEECCCcEEEEECCCCeeE
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.||.|++||+.++.++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 89999999999999999988877 8999999996 678999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..|.. .|.+++|+|+|++|++++.||.|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 98877654 8999999999999999999999999998655
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-39 Score=358.99 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=258.8
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.+.+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEE
Confidence 344544 59999999999999995 9999999999999998887653 36789999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++|| .+++.+..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999975421 2223357799999999999998654 699999999999999 88888877
Q ss_pred e-----cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 490 F-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 490 ~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+ .+|...|.+++|++. ++.++++|+.|++|++||++. ......+..|...|.+++|+|++++|++++. |
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D 270 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----D 270 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----S
T ss_pred eecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----C
Confidence 7 679999999999764 568999999999999999984 4667788889999999999999999999986 9
Q ss_pred ceEEEEeCCCCceeeEeccccC------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec--CCCCCCccEE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPRL 635 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v 635 (945)
+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||..+++.+..+.. .+|...|.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 9999999999998888765432 1378899999999999999999999999999988877632 2455689999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+|+|+|++|++|+.||+|++|++...
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999999999999765
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.9e-39 Score=352.05 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=238.2
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeC------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..|...|++++|||||+ +||+|+. |++|++|+..++...... .....+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEE
Confidence 35999999999999999 5999987 678999988776543210 1124568899999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+|++++| +++.||+|+|||+.+++..... ....+|...|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 5778999999999988654322 23458999999999999999 899999999999999 88999999999
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec--CCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEE
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iw 569 (945)
|...|++++|++..+ .++++++.||+|++||+++++....+. .+...+.+++|+|++. +|++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999987643 578999999999999999887765543 4556799999999864 5666664 8899999
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT 647 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~ 647 (945)
|+++++.+..+.++.. .+.+++|+|++ ++|++|+.||.|++||+++++++..+ +|...|++++|+| ++.+|+++
T Consensus 255 d~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 255 NIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp ESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEE
T ss_pred ECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEE
Confidence 9999999999998877 79999999987 57889999999999999999887765 3455899999999 89999999
Q ss_pred ECCCcEEEEECCCC
Q 002264 648 TADNGFKILANAIG 661 (945)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (945)
+.||+|++|++.+.
T Consensus 331 s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 331 GWDHKVLHHHLPSE 344 (357)
T ss_dssp ETTSCEEEEECC--
T ss_pred cCCCeEEEEECCCC
Confidence 99999999999765
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-38 Score=342.32 Aligned_cols=248 Identities=16% Similarity=0.219 Sum_probs=226.0
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 477899999999999999999999999999999999887665 6778999999999999999 89999999999999
Q ss_pred e-CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 481 d-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
| .++ .....+.+|...|.++.|++. ..+++++.|++|++||+.++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 443 356778899999999999764 25899999999999999999999999999999999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++. |+.|++||++++.....+.+|.. .+.+++|+|++++|++|+.||.|++||+++++.+..+..+.....|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 985 99999999999999999999877 8999999999999999999999999999999888877655555579999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+|+|+|++|++|+.||.|++||+.++
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999999998765
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=343.58 Aligned_cols=300 Identities=16% Similarity=0.241 Sum_probs=245.4
Q ss_pred eEEee-cCCC-cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 337 VAVSL-HQGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 337 ~~~~~-~h~~-~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
....+ +|.+ .|++++|+|+|+ +||+|+.|++|+|||+.+++.... .....+|...|.+++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEE
Confidence 34444 4877 999999999999 599999999999999987653311 1224689999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceEEEe
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNF 490 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~ 490 (945)
+|+|++||+|+.|++|++|++.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++|| ..+ ..+..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 99999999999999999999987642 22336889999999999999999 899999999999999 554 346678
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe--eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|++++|++++. |+.|++
T Consensus 147 ~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~i 220 (345)
T 3fm0_A 147 NSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRI 220 (345)
T ss_dssp CCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred cCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEE
Confidence 89999999999987 557999999999999999987653 3567888899999999999999999986 999999
Q ss_pred EeCCCC---------------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe----eEE---EeecC
Q 002264 569 WNESEG---------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----ILT---STDAE 626 (945)
Q Consensus 569 wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~---~~~~~ 626 (945)
||.... +.+..+.+.+...+..++|+|++..+++++.|+.|++|+...+. ... .....
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 996321 23445555444579999999999999999999999999987643 111 11123
Q ss_pred CCCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCc
Q 002264 627 GGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+|...|++++|+|++ .+||+++.||+|++|++.+++
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 455689999999987 599999999999999998774
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=342.93 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=238.1
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccccccccccccccc-CcccccccccCCCccEEEEEEcCCCCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC-SLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.|...|.+++|+|||+ +|++|+ |+++++||..... |+.... ...........|...|.+++|+|++ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3667899999999999 588777 8888888742110 000000 0000011123466789999999985 6
Q ss_pred EEEEECCCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++|| .+++++..+.+|...|+
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998766432 23558999999999999999 899999999999999 88999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CCCeEEEEEEcCCC-CEEEEEeecCCCCceEEEEeCCCCc
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
+++|++.+ ..+|++++.|++|++||+++++....+.. +...+.+++|+|++ +++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 99998753 35889999999999999999888776643 45578999999965 56667764 8999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i 653 (945)
.+..+.+|.. .+.+++|+|++ ++|++|+.||.|++||+.++++.. +. +|...|++++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999987 89999999998 578999999999999999988654 33 4455899999999886 67799999999
Q ss_pred EEEECCCC
Q 002264 654 KILANAIG 661 (945)
Q Consensus 654 ~iw~~~~~ 661 (945)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999764
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-37 Score=330.51 Aligned_cols=288 Identities=18% Similarity=0.289 Sum_probs=254.1
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
...+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++.. ..+.+|...|.+++|+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFE-------------------KTISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE-------------------EEECCCSSCEEEEEECTTS
T ss_pred EEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccc-------------------hhhccCCCceEEEEEcCCC
Confidence 3445999999999999999 5999999999999999887655 2367899999999999999
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v 497 (945)
++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++.+..+..|..+|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999999999987665 6778999999999999999 899999999999999 8889999999999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
.+++|++ ++.++++++.||.|++||+++++....+. .+...+..++|+|+++++++++. ++.|++||+.+++.
T Consensus 153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKC 226 (312)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEE
T ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcE
Confidence 9999977 56899999999999999999888776654 34557999999999999999985 89999999999999
Q ss_pred eeEeccccCcc--eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE--CCCc
Q 002264 577 KRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--ADNG 652 (945)
Q Consensus 577 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~--~dg~ 652 (945)
+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++ .|+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALENDKT 304 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECTTTCC
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEccCCcc
Confidence 99998876532 2223344678899999999999999999999998887664 4899999999999999997 6999
Q ss_pred EEEEECC
Q 002264 653 FKILANA 659 (945)
Q Consensus 653 i~iw~~~ 659 (945)
|++|+.+
T Consensus 305 i~~W~~d 311 (312)
T 4ery_A 305 IKLWKSD 311 (312)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999864
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=351.92 Aligned_cols=302 Identities=15% Similarity=0.239 Sum_probs=247.8
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEc----CCCCcccccccccccccccCccc-ccccccCCCccEEEEE
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDRLVSKPFKIWDMAACSLPF-QASIFKDVPISVSRVA 413 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~i~ 413 (945)
....|.+.|++++|+|+|+.+||+|+.||.|++|++ .+++.+..... ...+. .++ ......+|.+.|++++
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR---HPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE---CCCCCC------CBCEEEEE
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc---ccccccccccCCCCceEEEE
Confidence 334477999999999999834999999999999999 87763100000 00000 000 0011234788999999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4454444 6778999999999999999 899999999999999 88888888888
Q ss_pred CCCC---------------EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 493 HEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 493 ~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
+... +.+++|++. ..+++++.||.|++||+.+......+..+...|.+++|+|++++|++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8776 889999874 4689999999999999999988888888999999999999999999998
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
. ++.|++||+.+++....+..|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 5 89999999999999999988776 79999999999 999999999999999999999988886654 8999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+|++++|++++.||.|++|++.++
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999999999999999765
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-37 Score=330.54 Aligned_cols=249 Identities=18% Similarity=0.310 Sum_probs=224.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|.+++|+|++++|++|+.||.|++||+.++..++ .+..|..+|.+++|+|+++ +|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEE
Confidence 4578899999999999999999999999999999999987665 6778999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcC-CCCEEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~ 556 (945)
|| .+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++.. ...+..|...|.+++|+| ++..|+++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99 88999999999999999999987 558999999999999999988744 456788899999999999 67889998
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+. |+.|++||++++.....+..++...+..+.++| ++.+|++++.||.|++||+++++++..+..|.. .|.+
T Consensus 160 s~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~ 233 (304)
T 2ynn_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (304)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEE
Confidence 85 999999999988877777655545788888876 678999999999999999999999999987654 8999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+|++++|++++.||+|++||..++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999999876
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-37 Score=335.92 Aligned_cols=249 Identities=14% Similarity=0.168 Sum_probs=224.1
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.+|.+.|.+++|+|++++||+|+.||+|++||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 477899999999999999999999999999999998876655 5667899999999999999 89999999999999
Q ss_pred e-CCC------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC--CCC
Q 002264 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGS 551 (945)
Q Consensus 481 d-~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~ 551 (945)
+ ... .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...|.++.++| +++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 8 322 34567778999999999987 457899999999999999999999999999999999999987 568
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
+|++++. |+.|++||+++++.+..+.+|.. .+.+++|+|+++.|++++.|+.|++||++.+..+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999985 89999999999999999998877 899999999999999999999999999999988877766554457
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 889999999999999999999999999765
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=347.38 Aligned_cols=341 Identities=10% Similarity=0.101 Sum_probs=276.4
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEc----cCCC------eeEEecC-------
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY----DTMG------SRVDYDA------- 536 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~------- 536 (945)
.+.+|+ ...........|...|.+++|+| ++. +|++++.||.|++||+ .++. ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP--LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECS--SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccchhhhhheeeeeccCceEEEEECC--CCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 345777 44444444455779999999987 457 9999999999999999 7777 3444433
Q ss_pred ---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 537 ---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 537 ---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
+...|.+++|+|++++|++++. ++.|++|| .+++.+..+..|.. .+.+++|+|++++|++++.||.|++||
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVE----NGELRLWN-KTGALLNVLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWN 177 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEET----TSCEEEEE-TTSCEEEEECCCCS-CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEe-CCCCeeeeccCCCc-cEEEEEECCCCCEEEEEecCCeEEEEE
Confidence 4668999999999999999985 88999999 67888888888876 899999999999999999999999999
Q ss_pred CCCCeeEEEeecCCCCC-------------CccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcc
Q 002264 614 MDNVNILTSTDAEGGLP-------------NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (945)
Q Consensus 614 ~~~~~~~~~~~~~~~~~-------------~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (945)
+.+++.+..+..+.... .+.+++|+|++ .+++++.||.|++|++.++. ....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-~~~~------------- 242 (425)
T 1r5m_A 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-PTGK------------- 242 (425)
T ss_dssp TTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-CSEE-------------
T ss_pred CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-eeee-------------
Confidence 99999988887654311 18899999875 57888889999999987641 1100
Q ss_pred eeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCC
Q 002264 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (945)
Q Consensus 681 ~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 760 (945)
+.
T Consensus 243 ----------------------------------------------------------------------------~~-- 244 (425)
T 1r5m_A 243 ----------------------------------------------------------------------------LI-- 244 (425)
T ss_dssp ----------------------------------------------------------------------------EC--
T ss_pred ----------------------------------------------------------------------------ec--
Confidence 00
Q ss_pred CCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeec
Q 002264 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (945)
Q Consensus 761 ~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s 840 (945)
.|...|.+++|+|+++.+++++.||.|++|++... +... .+.+ |...|.+++|+
T Consensus 245 -~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~-~~~~--~~~~i~~~~~~ 298 (425)
T 1r5m_A 245 -GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG----------------------NSQN-CFYG--HSQSIVSASWV 298 (425)
T ss_dssp -CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB----------------------SCSE-EECC--CSSCEEEEEEE
T ss_pred -cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC----------------------ccce-EecC--CCccEEEEEEC
Confidence 16678999999999999999999999999976432 1111 1233 78899999999
Q ss_pred CCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce-------------
Q 002264 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE------------- 906 (945)
Q Consensus 841 ~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~------------- 906 (945)
|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++|++|+.||.|++||+.+++
T Consensus 299 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 299 GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 999 788877 89999999999999999999999999999999 89999999999999999999988
Q ss_pred -------EEEEecCCCc--ceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 907 -------VKSKLKGHQK--RITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 907 -------~~~~l~~h~~--~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.+..+.+|.. .|++++|+|++++|++++.||.|++||++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8999999977 99999999999999999999999999985
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-37 Score=334.49 Aligned_cols=296 Identities=17% Similarity=0.272 Sum_probs=242.1
Q ss_pred eecCCCcEEEEEE-----eC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 340 SLHQGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 340 ~~~h~~~V~~v~f-----sp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
..+|.+.|++++| +| +++ +|++|+.|++|+|||+.+++..... ......+.+|...|.+++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCceEEEE
Confidence 3459999999999 77 888 6999999999999999765432100 001234789999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec--
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-- 491 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 491 (945)
|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+.......
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeeeecc
Confidence 99999999999999999999999987665 6789999999999999999 8999999999999995566555554
Q ss_pred -CCCCCEEEEEeeecCC--------ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 492 -GHEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 492 -~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
+|...|.+++|+|... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---- 233 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK---- 233 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC----
Confidence 7889999999987532 268999999999999994 45566677888999999999999999999985
Q ss_pred CceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE--Eeec---------CCCCC
Q 002264 563 DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDA---------EGGLP 630 (945)
Q Consensus 563 ~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------~~~~~ 630 (945)
|+.|++||+.. ......+.. .. .+.+++|+|++.+++ ++.|+.|++|++.+++... .+.. .++..
T Consensus 234 dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC
T ss_pred CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC
Confidence 99999999944 444444432 22 689999999988766 4567889999998876543 3331 13455
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7999999999999999999999999998764
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-37 Score=331.05 Aligned_cols=291 Identities=15% Similarity=0.215 Sum_probs=229.2
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccc-c-CCCccEEEEEEcCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRVAWSPD 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~i~~s~~ 417 (945)
..+|.+.|++++|+|+ +||+|+.|++|+|||+.++.... ...+ . +|...|.+++|+|+
T Consensus 10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~-----------------~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL-----------------IDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE-----------------EEEECTTCCCSCEEEEEECTT
T ss_pred eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE-----------------EEEEecCCccCCEEEEEECCC
Confidence 3459999999999998 59999999999999998753211 0112 3 39999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCc----ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC-CC----ceEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG----RKLF 488 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~-~~----~~~~ 488 (945)
+++||+|+.|++|++|++..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||. .+ +++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999986432 1223346789999999999999999 8999999999999993 32 4567
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC--CeeEEecCCCCeEEEEEEcCC--CCEEEEEeecCCCCc
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDS 564 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~d~~~ 564 (945)
.+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +..|++++. |+
T Consensus 148 ~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~ 221 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DS 221 (330)
T ss_dssp EECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TS
T ss_pred EeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CC
Confidence 8899999999999987 5589999999999999998876 456678889999999999998 678888885 89
Q ss_pred eEEEEeCCCC--------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee--EEEeecCCCCC-Ccc
Q 002264 565 FLVEWNESEG--------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLP-NLP 633 (945)
Q Consensus 565 ~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~ 633 (945)
.|++||+..+ .....+.+.+...+.+++|++++ .|++++.||.|++|+..+++. .... ...|.. .|.
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~ 299 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEIN 299 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEE
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEE
Confidence 9999998764 34455555233479999999764 899999999999999988753 2222 223343 799
Q ss_pred EEEEcC--CCCEEEEEECCCcEEEEECCC
Q 002264 634 RLRFSK--EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 634 ~v~~sp--~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+++|+| ++++|++|+.||+|++|++++
T Consensus 300 ~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 300 VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999 789999999999999999864
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-37 Score=340.63 Aligned_cols=307 Identities=17% Similarity=0.256 Sum_probs=248.1
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....++|.+.|+|++|||||+ +||+|+ +++++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 345567999999999999999 488876 789999999988765321000000 00000000011123445699999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
+|++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++. +|++++.|++|++|| .+++....+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999886655 6789999999999999999 899999999999999 7787777765 567
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
.+.+++|+|. ++.+|++|+.||.|++||++++.....+ ..|...|.+++|+|++++|++++. |+.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999874 5689999999999999999988776655 457779999999999999999986 999999
Q ss_pred EeCCCC------------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
||+.+. .....+.+|.. .+.+++|++++.+|++|+.||.|++||..+++.+..+..|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998763 34556777776 789999999999999999999999999999999988887654 899999
Q ss_pred EcC------CCCEEEEEECCCcEEEEECCC
Q 002264 637 FSK------EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 637 ~sp------~g~~l~~~~~dg~i~iw~~~~ 660 (945)
|++ ++++|++|+.||+|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 886 688999999999999999854
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-38 Score=353.71 Aligned_cols=368 Identities=14% Similarity=0.190 Sum_probs=274.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEE----------eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... .....|...|.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~ 73 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDL 73 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEE
Confidence 445899999999998679999 8899999999988753210 1123588999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCc----
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR---- 485 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~---- 485 (945)
+|+|++++|++|+.||.|++|++.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++|| .+++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence 9999999999999999999999987211 1133367789999999999998 66 899999999999999 5554
Q ss_pred --eE---EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------CCeEEEEEEcCCC-CEE
Q 002264 486 --KL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-SRL 553 (945)
Q Consensus 486 --~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~-~~l 553 (945)
.. ..+..|...|.+++|++.. +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 22 2346799999999998752 579999999999999999998888888776 6789999999998 567
Q ss_pred EEEeecCCCCc---eEEEEeCCCC-ceeeEec-cccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 554 FSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 554 ~~~~~~~d~~~---~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
++++. ++ .|++||++++ .....+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 231 ~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 231 ATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp EEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred EEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 77764 55 9999999986 5677777 6765 899999999 89999999999999999999999999888765
Q ss_pred CCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccccc
Q 002264 628 GLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (945)
Q Consensus 628 ~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~ 706 (945)
. .|.+++|+|++ .+|++++.||.|++|++.+...... .... ..........+.+.+..++.........+ .
T Consensus 306 ~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 377 (416)
T 2pm9_A 306 N--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD-EQET---ETKQQESETDFWNNVSREESKEKPSVFHL--Q 377 (416)
T ss_dssp S--CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC-C-------------------------CCSCCCSSCC--C
T ss_pred C--ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc-cccc---cccccCCcccccccccccccccccccccc--c
Confidence 4 89999999999 8999999999999999987632221 1110 00111222333333333332222111111 0
Q ss_pred CCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
.+. ...-......++++|+++++++.|+.|++|++..
T Consensus 378 ~~~--~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 378 APT--WYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCS--TTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCc--cccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 000 0001112456788888999999999999999863
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-36 Score=331.10 Aligned_cols=300 Identities=22% Similarity=0.300 Sum_probs=255.3
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
...++ +|.+.|++|+|+|++..+||||+.||+|+|||+.+++.... .....+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEEC
Confidence 33445 49999999999998544799999999999999987654321 1124578999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEEEecCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGH 493 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~~~~~~ 493 (945)
|+|++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++|| .... ....+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999998876554 4557888999999999999 899999999999999 3333 34456789
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...+..++|++.+...++++++.|+.|++||+++......+..+...|++++|+|++++|++++. |+.|++||+.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~ 246 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNE 246 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTT
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEecc
Confidence 99999999998877788999999999999999999999999999999999999999999999985 89999999999
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-------CCCCCCccEEEEcCCCCEEEE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~sp~g~~l~~ 646 (945)
++.+..+..+. .+..++|+|++. +++++.|+.|++||++++..+..+.. ..+...|++++|+|+|++|++
T Consensus 247 ~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 GKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 99998887654 688999999865 55667799999999999887776643 245568999999999999999
Q ss_pred EECCCcEEEEECCCCc
Q 002264 647 TTADNGFKILANAIGL 662 (945)
Q Consensus 647 ~~~dg~i~iw~~~~~~ 662 (945)
|+.||.|+|||+.+|.
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999998873
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=330.54 Aligned_cols=207 Identities=17% Similarity=0.279 Sum_probs=176.7
Q ss_pred ceeeccccc-cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE---EEecCCCCCEEEEEeeecCCccEEEEEEcCC
Q 002264 444 HSQIDAHVG-AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDG 518 (945)
Q Consensus 444 ~~~~~~h~~-~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 518 (945)
..++.+|.. .|++++|+|+|+ +|++|+.|++|++|| ..+... ....+|...|.+++|+| ++++|++++.|+
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~--~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~ 83 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDA 83 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSS--CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred eeeecCCCCCcEEEEEECCCCC--EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEECCC
Confidence 346778988 999999999999 899999999999999 555432 22368999999999987 568999999999
Q ss_pred eEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccCcceEEEEE
Q 002264 519 KIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQF 593 (945)
Q Consensus 519 ~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~ 593 (945)
++++||+.... ....+..|...|.+++|+|++++|++++. |+.|++||+.++. .+..+.+|.. .+.+++|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~ 158 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVW 158 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEE
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEE
Confidence 99999998764 45577888899999999999999999986 8999999998763 4556777766 7999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+|++++|++++.|+.|++||..++.........+|...|.+++|+|+|++|++++.|++|++|+..
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 999999999999999999999888654433334455689999999999999999999999999864
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=352.81 Aligned_cols=332 Identities=13% Similarity=0.165 Sum_probs=263.1
Q ss_pred CccEEEEEEcCCCC-EEEEE----------ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 406 PISVSRVAWSPDGN-YVGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 406 ~~~V~~i~~s~~g~-~las~----------~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
...|.+++|+|+|+ +|++| +.|+.|++||+.+++..+....+ .|...|.+++|+|++. +|++|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccC
Confidence 35788999999987 99999 88999999999987643332233 5899999999999999 89999999
Q ss_pred CcEEEEe-CC----CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC------eeEE---ecCCCCe
Q 002264 475 KLIKVWE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRVD---YDAPGHW 540 (945)
Q Consensus 475 ~~i~vwd-~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~ 540 (945)
+.|++|| .. .+.+..+.+|...|.+++|+|+ ++.+|++++.||.|++||+.+.. .... ...+...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999 44 3588899999999999999875 25799999999999999998876 3332 2445667
Q ss_pred EEEEEEcCC-CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 541 CTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 541 i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
|.+++|+|+ +..+++++. ++.|++||+++++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888887 566666654 667777777766655554433220
Q ss_pred EEEeecCCCCCCccEEEEcCCC-CEEEEEECCC---cEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------- 256 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------------------------- 256 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------
Confidence 1223479999999987 6899999998 9999998754110000
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccccc-CCCcCCceeEEeecC-CCceEEecC-CC
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALSK-NDSYVMSAT-GG 852 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~~l~~s~-dg~~la~~s-d~ 852 (945)
+. + |...|.+++|+| ++++|++++ |+
T Consensus 257 -------------------------------------------------~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 257 -------------------------------------------------LNQG--HQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp -------------------------------------------------CCSC--CSSCEEEEEECSSCSSCEEEEESSS
T ss_pred -------------------------------------------------eecC--ccCceeEEEeCCCCCCeEEEEeCCC
Confidence 00 1 566788888888 888899888 88
Q ss_pred eEEEEeccCceEEEEecCCCCCeeEEEeecCCC-ceEEEeecCceEEEEecccceEEEEec-------------------
Q 002264 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN-NIIAIGTEDSTIHIYNVRVDEVKSKLK------------------- 912 (945)
Q Consensus 853 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~-~~lasg~~dg~v~vwd~~~~~~~~~l~------------------- 912 (945)
+|++||+.+++++.++.+|...|++++|+| ++ .+|++++.||.|++||+.++.......
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC--------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 999999999999999999999999999999 66 899999999999999998765322211
Q ss_pred ----------------CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 913 ----------------GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 913 ----------------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.|..++.+++|+|||++|++++.|++|+||++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 16778889999999999999999999999997
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-37 Score=336.67 Aligned_cols=279 Identities=14% Similarity=0.220 Sum_probs=203.5
Q ss_pred EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC
Q 002264 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~ 426 (945)
-..+.+.+++. ++.++.+.....|++.... ..+|...|++++|||||++||+|+.
T Consensus 8 ~sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~ 62 (357)
T 4g56_B 8 SSGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASS 62 (357)
T ss_dssp ---------------------------------------------------------CCCSEEEEEEECSSSCEEEEEEC
T ss_pred ccCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcC
Confidence 34555666664 3444446778889875432 3359999999999999999999998
Q ss_pred ------CCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE----EEecCCC
Q 002264 427 ------KHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFEGHE 494 (945)
Q Consensus 427 ------dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~----~~~~~~~ 494 (945)
|+.|++|+..++...... ....+|...|.+++|+|++. +++++.||+|++|| .+++.. ....+|.
T Consensus 63 d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 139 (357)
T 4g56_B 63 LSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHD 139 (357)
T ss_dssp SSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCS
T ss_pred CCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCC
Confidence 778999998877644322 23457899999999999985 56678899999999 666543 3445899
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
..|++++|+| ++++|++++.|+.|++||+++++....+..|...|.+++|++++. .+++++. ++.|++||+++
T Consensus 140 ~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~----dg~v~~wd~~~ 213 (357)
T 4g56_B 140 DIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE----DGRILLWDTRK 213 (357)
T ss_dssp SCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET----TSCEEECCTTS
T ss_pred CCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc----CCceEEEECCC
Confidence 9999999987 668999999999999999999999999999999999999999886 5677764 89999999999
Q ss_pred CceeeEeccc-cCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-CEEEEEECC
Q 002264 574 GTIKRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTAD 650 (945)
Q Consensus 574 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~d 650 (945)
++....+... ....+.+++|+|++ .+|++|+.|+.|++||+++++.+..+..+.. .|.+++|+|++ ++|++++.|
T Consensus 214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETT
T ss_pred CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCC
Confidence 8877665432 23368899999974 6888999999999999999999988876654 89999999987 689999999
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
++|+|||+.++
T Consensus 292 ~~i~iwd~~~~ 302 (357)
T 4g56_B 292 CTVAVLDADFS 302 (357)
T ss_dssp SCEEEECTTSC
T ss_pred CEEEEEECCCC
Confidence 99999998765
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-36 Score=323.91 Aligned_cols=248 Identities=19% Similarity=0.305 Sum_probs=219.4
Q ss_pred ccccCCCccEEEEEEcCCC-CEEEEEECCCcEEEEEccCCcc--cccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 400 SIFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g-~~las~~~dg~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
..+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|++. ++++|+.|++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~ 88 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKT 88 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCE
Confidence 4578999999999999965 8999999999999999875332 122346889999999999999999 8999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC------
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------ 549 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~------ 549 (945)
|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ +.....+..|...+.++.++|.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 99999 88999999999999999999977 56899999999999999986 4566777888889999999985
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
+..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 166 ~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 237 (319)
T 3frx_A 166 SVTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--- 237 (319)
T ss_dssp CCEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---
T ss_pred ccEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---
Confidence 447888885 99999999999999999999887 8999999999999999999999999999999998888754
Q ss_pred CCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..|.+++|+|++.++++++.+ .+++|++...
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 379999999999999988865 5999998754
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.2e-36 Score=320.94 Aligned_cols=251 Identities=21% Similarity=0.324 Sum_probs=225.4
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|...|++++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~v 91 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKI 91 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEE
Confidence 4578999999999999999999999999999999999887655 6778999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+++++....+..+...|.+++|+|+++++++++.
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99 88999999999999999999987 5589999999999999999999988899899999999999999999999985
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.|++||+++++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 ----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp ----TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred ----CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 8999999999999888876666557899999999999999999999999999999999888776543223333444
Q ss_pred -CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 -KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 -p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++.++++|+.||.|++||+.++
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTC
T ss_pred eCCCcEEEEECCCCEEEEEECCCc
Confidence 68899999999999999999765
No 41
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-37 Score=337.91 Aligned_cols=308 Identities=14% Similarity=0.185 Sum_probs=251.5
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
.+..|+..+....+++.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..|.. .|.+++|+|+|++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 345577777888889999987 899999999999999999999999999999999988887654 89999999999999
Q ss_pred EEEECCCcEEEEECCCCcc------ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 645 AVTTADNGFKILANAIGLR------SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
++|+.|+.+++|++.+... ....+.+ +.+.+.++.|.|++.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g-----h~~~v~~~~~~~~~~---------------------------- 170 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTG-----HKGYASSCQYVPDQE---------------------------- 170 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCC-----CSSCCCCCBCCSSSS----------------------------
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccC-----CCcceEEEEEecCCC----------------------------
Confidence 9999999999999975421 1122222 233455566655432
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEec-CCCeEEEeeecCeEEEEeecCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~lw~~~~~~ 797 (945)
..+++++.|++|++||+..... ...+......+|...|.++++++ ++..+++++.||.|++||+....
T Consensus 171 --------~~l~s~s~D~~i~~wd~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 171 --------TRLITGSGDQTCVLWDVTTGQR---ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp --------SCEEEECTTSCEEEECTTTCCE---EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred --------CEEEEECCCCcEEEEEcCCCcE---EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 3457999999999999975321 12221222235889999999987 88999999999999999864211
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC---
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP--- 873 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~--- 873 (945)
.. ...+.+ |...|++++|+|++++|++|+ |++|++||+.+++.+..+..+..
T Consensus 240 ---------------------~~-~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 240 ---------------------RA-VRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp ---------------------CC-CEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred ---------------------cc-eEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence 11 112444 899999999999999999999 89999999999999888875432
Q ss_pred ----CeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe----cCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 874 ----ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL----KGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 874 ----~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l----~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.|++++|+| ++++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|+||+.|++|++|++
T Consensus 296 ~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 296 NELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 489999999 9999999999999999999999988877 689999999999999999999999999999997
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=331.39 Aligned_cols=297 Identities=13% Similarity=0.151 Sum_probs=222.6
Q ss_pred EEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-------C----ceeeEeccccCcceE
Q 002264 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G----TIKRTYAGFRKKSNG 589 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-------~----~~~~~~~~~~~~~~~ 589 (945)
+.|++..... ..+...|.+++|+|||++|++++ +..+++||... . ........+. ..|.
T Consensus 17 r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-----d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 86 (344)
T 4gqb_B 17 REWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-----SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE-AGVA 86 (344)
T ss_dssp ------CCSC----SSCCSEEEEEEECTTSCEEEEEE-----CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEES-SCEE
T ss_pred cccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-----CCceEEeeceeeeeccccccCCcceeeeeeccC-CCEE
Confidence 5676654322 23456799999999999998876 45566666321 0 0111111122 2589
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee--cCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc
Q 002264 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD--AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
+++|+|+ +.+++|+.||.|++||+.+++.+.... ..+|...|.+++|+|+|++|++|+.|++|++||+.++ +.+..
T Consensus 87 ~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~ 164 (344)
T 4gqb_B 87 DLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSS 164 (344)
T ss_dssp EEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred EEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEE
Confidence 9999998 478899999999999999987654432 3355668999999999999999999999999999876 22211
Q ss_pred ccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceee
Q 002264 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIV 747 (945)
Q Consensus 668 ~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 747 (945)
+
T Consensus 165 ~------------------------------------------------------------------------------- 165 (344)
T 4gqb_B 165 Y------------------------------------------------------------------------------- 165 (344)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCCcceeeecCCCCCCccceEEEEEecCCC-eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccccc
Q 002264 748 DSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (945)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (945)
. +|...|.+++|++++. .+++++.||+|++||+.... .... +.
T Consensus 166 ----------~---~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----------------------~~~~-~~ 209 (344)
T 4gqb_B 166 ----------R---AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK----------------------PASQ-IG 209 (344)
T ss_dssp ----------C---CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS----------------------CEEE-CC
T ss_pred ----------c---CcCCceEEEEecCCCCCceeeeccccccccccccccc----------------------eeee-ee
Confidence 1 1778899999999885 57888899999999864321 1111 11
Q ss_pred CCCcCCceeEEeecCC-CceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 827 GVNLEEAVPCIALSKN-DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 827 ~~~~~~~i~~l~~s~d-g~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
...+...+.+++|+|+ ++++|+|+ |++|+|||+.+++++.++.+|...|++++|+|++.++||+|+.||+|+|||+.+
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 1115667899999995 56788888 899999999999999999999999999999994347899999999999999999
Q ss_pred ceEEEEecCCCcceeEEEecCCcce-eeeecCCceEEEEecC
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNI-LVSSGADAQVTLCVEH 945 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~-l~s~~~Dg~i~vWdl~ 945 (945)
++++ .+.+|.+.|++|+|+|+++. |+|+|.|++|++|+++
T Consensus 290 ~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 290 SELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp CEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 8765 57899999999999999875 6689999999999974
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-36 Score=329.02 Aligned_cols=285 Identities=14% Similarity=0.149 Sum_probs=242.6
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|.+.|.+++|+|||+. ++++..++.+.+|........ ....+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQ-------------------INTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEE-------------------EEEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCcccc-------------------ceeccCCCceEEEEEecCCcEEE
Confidence 5668999999999994 777776666666644332221 11347999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc--eEEEecCCCCCE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~--~~~~~~~~~~~v 497 (945)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655444444 7999999999999999 899999999999999 6655 567788899999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.+++|++ +++++++++.||.|++||+++++....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999987 5689999999999999999999888888888999999999999999999985 899999999999888
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..+.. . ..+.+++|+|+++.+++++.+|.|++||+.+++... +. .+...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 77753 3 368999999999999999999999999999887653 33 3345899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9766
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5e-36 Score=325.08 Aligned_cols=319 Identities=12% Similarity=0.145 Sum_probs=265.1
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
|.++|.+++|+|||+ +++++..++.+..|+ ..........+|...|.+++|++ +++++++++ ||.|++||+.+.
T Consensus 8 ~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTST
T ss_pred cCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCC
Confidence 667899999999999 787777777777777 44444445557999999999987 568999988 999999999876
Q ss_pred Cee---EEec--CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEE
Q 002264 529 GSR---VDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 529 ~~~---~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
... ..+. .+...|.+++|+|+++++++++. ++.|++||+.+++ ....+..+.. .+.+++|+|++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCF 157 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEE
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCCC-ceEEEEECCCCCEEE
Confidence 533 2222 67789999999999999999885 8999999999887 5566666665 789999999999999
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcce
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (945)
+++.||.|++||+++++.+..+..+. ..|.+++|+|+++++++++.||.|++||+.++.. ..
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~--------------- 219 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQ--------------- 219 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EE---------------
T ss_pred EEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCce-Ee---------------
Confidence 99999999999999999988887654 4899999999999999999999999999875410 00
Q ss_pred eeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC
Q 002264 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST 761 (945)
Q Consensus 682 ~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 761 (945)
.
T Consensus 220 ------------------------------------------------------------------------~------- 220 (337)
T 1gxr_A 220 ------------------------------------------------------------------------Q------- 220 (337)
T ss_dssp ------------------------------------------------------------------------E-------
T ss_pred ------------------------------------------------------------------------e-------
Confidence 0
Q ss_pred CCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 762 ~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
.. +...+.+++|+|
T Consensus 221 -----------------------------~~-------------------------------------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 221 -----------------------------HD-------------------------------------FTSQIFSLGYCP 234 (337)
T ss_dssp -----------------------------EE-------------------------------------CSSCEEEEEECT
T ss_pred -----------------------------ec-------------------------------------CCCceEEEEECC
Confidence 00 234466777888
Q ss_pred CCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeE
Q 002264 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 920 (945)
+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~ 311 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLS 311 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEE
Confidence 888888777 77788888877665 45677999999999999 8999999999999999999999887554 48899999
Q ss_pred EEecCCcceeeeecCCceEEEEec
Q 002264 921 LAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 921 l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++|+|++++|++++.||.|++||+
T Consensus 312 ~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 312 CDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999996
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-36 Score=339.66 Aligned_cols=342 Identities=10% Similarity=0.090 Sum_probs=275.2
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
..+++++|+|+|++|++|+.||.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| ..++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345578999999999999999999999999876654 34445 4455667899999 899999999999999 7778
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
....+.+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 8888889999999999987 5689999999999999999999999999999999999999999999999985 899
Q ss_pred EEEEeCCCCceeeEecccc--CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 566 LVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
|++||+++++.+..+..+. ...+.++++.+.+... .... +...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEI--STSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGG--CCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeec--ccCcccceEEcCCCCE
Confidence 9999999999998887643 2256667766543211 1111 2347899999999999
Q ss_pred EEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCcc
Q 002264 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (945)
|++++.||.|++||+.++..... +
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~-~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQ-L------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE-E-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEE-c-------------------------------------------------------
Confidence 99999999999999875511000 0
Q ss_pred CCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCc
Q 002264 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (945)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (945)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc-eEEecC-CCeEEEEeccCceE-EEEecC-CCCCeeEEE
Q 002264 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKV-MTTFMS-PPPASTFLA 879 (945)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~-~la~~s-d~~i~iwd~~~~~~-~~~~~~-h~~~i~~l~ 879 (945)
..+ |...|.+++|+|+++ +|++|+ ||.|++||+.+++. +..+.+ |...|+++.
T Consensus 286 ---------------------~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 286 ---------------------PSK--FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp ---------------------CCT--TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred ---------------------ccc--cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 000 556677788888887 777777 77888888877643 566665 666788885
Q ss_pred eecCCCceEEEeecCceEEEEecccc---------eEEEEecCCCcceeEEEecCCcc---eeeeecCCceEEEEec
Q 002264 880 FHPQDNNIIAIGTEDSTIHIYNVRVD---------EVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQVTLCVE 944 (945)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~~~Dg~i~vWdl 944 (945)
+ + ++++|++++.||.|++|++... .....+.+|.+.|.+++|+|++. .+++++.+|.+.+|++
T Consensus 343 ~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 343 F-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp E-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred e-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 5 4 5789999999999999998863 22334667899999999999999 7888889999999997
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-36 Score=338.38 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=238.4
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEEE
Confidence 4558999999996 8999999999999998876542 24445 4556668899999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
.||.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++|| .+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876554 5678999999999999999 899999999999999 88889999999999999999987
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCeeEEecCC---CCeEEE---------------------EEEcCCCCEEEEEeecC
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTT---------------------MLYSADGSRLFSCGTSK 560 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~---------------------~~~s~~~~~l~~~~~~~ 560 (945)
++.+|++++.||.|++||+++++....+..+ ...+.+ ++|+|+++++++++.
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 5689999999999999999998888777642 234444 445789999999885
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCCee-EEEeecCCCCCCccEEEEc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 638 (945)
++.|++||+++++....+...+...+.+++|+|++. +|++++.||.|++||+++++. +..+..+. ...|.++.+
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~- 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF- 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE-
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe-
Confidence 899999999999988887665555899999999998 999999999999999998754 66666533 337778855
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++|++++.||.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999999764
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=343.63 Aligned_cols=382 Identities=11% Similarity=0.115 Sum_probs=277.5
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEEEEEECCCc
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~las~~~dg~ 429 (945)
.|+|+++. +++++ .|+. +++.+. .+..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~------------------~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIA------------------TLMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEE------------------EECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEe------------------eeccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 36888884 66554 3763 344332 22378999999999999 9999999999999
Q ss_pred EEEEEccC---CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC----CCceEEEecCCCCCEEEEEe
Q 002264 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL----SGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 430 i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~----~~~~~~~~~~~~~~v~~~~~ 502 (945)
|++||+.+ +...+....+ +|...|.+++|+|+++ +|++|+.|++|++||. .++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433333233 5999999999999999 8999999999999993 56666666555 5666666
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE--EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
++.+ +...+.++. +++++.++++++. ++.|++||+++++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 5421 122233444 6789999999985 899999999999999999
Q ss_pred cc--ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc----CCCCEEEEEECCCcEE
Q 002264 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS----KEGNLLAVTTADNGFK 654 (945)
Q Consensus 581 ~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----p~g~~l~~~~~dg~i~ 654 (945)
.+ |.. .+.+++|+|++++|++|+.||.|++||+++++++..+.... ...|.+++|+ |++.+|++++.||.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 88 554 89999999999999999999999999999999988876332 2379999665 4688999999999999
Q ss_pred EEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCC
Q 002264 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (945)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (945)
+||+.++ +....+.++.. .+..+.|+|+++.+
T Consensus 287 iwd~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~l------------------------------------------ 318 (437)
T 3gre_A 287 IWNFVKG-HCQYAFINSDE-----QPSMEHFLPIEKGL------------------------------------------ 318 (437)
T ss_dssp EEETTTT-EEEEEEESSSS-----CCCGGGGSCBCSSG------------------------------------------
T ss_pred EEEcCCC-cEEEEEEcCCC-----CCccceeccccccc------------------------------------------
Confidence 9999887 44444433322 22333333333221
Q ss_pred CCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecccccc
Q 002264 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (945)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (945)
.+..
T Consensus 319 -------------------------------------------------~~~~--------------------------- 322 (437)
T 3gre_A 319 -------------------------------------------------EELN--------------------------- 322 (437)
T ss_dssp -------------------------------------------------GGCC---------------------------
T ss_pred -------------------------------------------------ccce---------------------------
Confidence 0000
Q ss_pred CCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC---CeeEEEeecCCCceEEE
Q 002264 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAI 890 (945)
Q Consensus 815 ~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~---~i~~l~~s~~~~~~las 890 (945)
+.+..|...|++++|+ ++++|++|+ |+.|++||+.+++....+.+|.. .+....+++ +..+++.
T Consensus 323 ----------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 390 (437)
T 3gre_A 323 ----------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLR 390 (437)
T ss_dssp ----------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEE
T ss_pred ----------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEE
Confidence 0011177889999999 788899998 89999999999998888887654 356666776 5555544
Q ss_pred eecCceEEEEecccceEEEEecCCCcceeEEEecCC--cceeeeecCCceEEEEe
Q 002264 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQVTLCV 943 (945)
Q Consensus 891 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~vWd 943 (945)
. |+...+........|.+.|++++|+++ +.+|+||+.||.|+||+
T Consensus 391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 344444555666779999999999988 88999999999999995
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-35 Score=354.91 Aligned_cols=294 Identities=20% Similarity=0.297 Sum_probs=250.9
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
..+|.+.|+|++|+|++..+|+||+.|++|+||++.+...... .....+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence 3459999999999998765899999999999999976543211 01134789999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe----cCCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEA 495 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~~~~ 495 (945)
+|++|+.||+|++||+.++...+ .+.+|...|.+++|+|++. +|++|+.|++|++||..+.....+ .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 6789999999999999999 899999999999999555544443 46888
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|.+++|+|......+++++.|++|++||++.......+..|...|.+++|+|++++|++++. |+.|++||+.+++
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGK 594 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 999999998655578999999999999999999988899999999999999999999999985 9999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC-----------------CCCccEEEEc
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLRFS 638 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s 638 (945)
.+..+..+ ..+.+++|+|++.++++++ ++.|++||++++..+..+..+.. ...+.+++|+
T Consensus 595 ~~~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 595 KLYSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp EEECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred eEEEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 88777654 3689999999988777665 56699999999998877653211 1136789999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 002264 639 KEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~ 659 (945)
|+|++|++|+.||.|++|++.
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999985
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-35 Score=327.97 Aligned_cols=289 Identities=14% Similarity=0.220 Sum_probs=238.3
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----------------cceEEEEEcCCCC
Q 002264 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------------KSNGVVQFDTTQN 598 (945)
Q Consensus 536 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 598 (945)
.|...|.+++|+|||++|++++ ++.+++|++.+++.+..+..+.. ..+.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-----~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 4777899999999999999875 67899999999998887765432 1388999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.|++|++||+.++.. ...+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~---------- 203 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTL---------- 203 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEE----------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCC--CEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEE----------
Confidence 999999999999999999999888876654 899999999999999999999999999976621 1000
Q ss_pred cceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecC
Q 002264 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (945)
Q Consensus 679 ~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (945)
.
T Consensus 204 -----------------------------------------------------------------------------~-- 204 (393)
T 1erj_A 204 -----------------------------------------------------------------------------S-- 204 (393)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------E--
Confidence 0
Q ss_pred CCCCCccceEEEEEec-CCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 759 ESTDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 759 ~~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
+...+.+++++| +++++++++.||.|++||+.... ..... +.. .....+ |...|+++
T Consensus 205 ----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~------~~~~~-----~~~-----~~~~~~--h~~~v~~v 262 (393)
T 1erj_A 205 ----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF------LVERL-----DSE-----NESGTG--HKDSVYSV 262 (393)
T ss_dssp ----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC------EEEEE-----C-----------CC--CSSCEEEE
T ss_pred ----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc------EEEee-----ccc-----ccCCCC--CCCCEEEE
Confidence 334578899998 89999999999999999864321 11100 000 000123 88999999
Q ss_pred eecCCCceEEecC-CCeEEEEeccC------------ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 838 ALSKNDSYVMSAT-GGKISLFNMMT------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 838 ~~s~dg~~la~~s-d~~i~iwd~~~------------~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
+|+|+|++|++|+ |++|++||+.+ +.+..++.+|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCC
Confidence 9999999999999 89999999875 345667889999999999999 899999999999999999999
Q ss_pred ceEEEEecCCCcceeEEEecC------CcceeeeecCCceEEEEec
Q 002264 905 DEVKSKLKGHQKRITGLAFST------SLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~------dg~~l~s~~~Dg~i~vWdl 944 (945)
++.+..+.+|.+.|.+++|++ ++.+|+||+.||+|+||++
T Consensus 342 ~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 999999999999999999986 6889999999999999997
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-35 Score=327.07 Aligned_cols=290 Identities=13% Similarity=0.184 Sum_probs=242.6
Q ss_pred eecCCCcEEEEEEeCCC-CeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-C
Q 002264 340 SLHQGSTVISMDFHPSH-QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g-~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~ 417 (945)
..+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++.... ....+|...|.+++|+| +
T Consensus 69 ~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp ECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCSTTCBEEEEEEETTE
T ss_pred ccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCccccee-----------------eecCCcCCceeEEEeCCCC
Confidence 34599999999999999 6 699999999999999988765421 11347999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
+++|++|+.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCE
T ss_pred CCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcE
Confidence 89999999999999999986 44443333345568899999999999 8999999999999998888999999999999
Q ss_pred EEEEeeecCCcc-EEEEEEcCCeEEEEEccC----CCeeEEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeC
Q 002264 498 YSICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 498 ~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
.+++|+|. +. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++||+
T Consensus 208 ~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~ 280 (383)
T 3ei3_B 208 THAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSS 280 (383)
T ss_dssp EEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEET
T ss_pred EEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEEC
Confidence 99999874 45 899999999999999987 4444444 5788999999999 9999999985 899999999
Q ss_pred CCCceeeEeccccC----------------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 572 SEGTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 572 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++++....+.++.. ..+..++++|++.+ +++.||.|++||+.+++.+..+..+.+...+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~ 358 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN 358 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE
Confidence 99888777765431 12333555666655 6678999999999999999999876655678888
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+|+|++++|++++ ||.|++|++++
T Consensus 359 ~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 359 KFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999997 89999999864
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.6e-35 Score=315.61 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=208.6
Q ss_pred ccccCCCccEEEEEE-----cC-CCCEEEEEECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEE
Q 002264 400 SIFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVV 469 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~-----s~-~g~~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~ 469 (945)
..+.+|.+.|++++| ++ ++++|++|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 458899999999999 77 9999999999999999999765421 22346789999999999999999 899
Q ss_pred EEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEE
Q 002264 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTML 545 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~ 545 (945)
+|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.. ....... .+...|.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 999999999999 88999999999999999999987 568999999999999999873 3333332 5667899999
Q ss_pred EcCCC----------CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 546 YSADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 546 ~s~~~----------~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
|+|++ .++++++. ++.|++|| ...+....+.+|.. .+.+++|+|++++|++|+.||.|++||+.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 99987 68888885 99999999 45667777888876 79999999999999999999999999994
Q ss_pred -CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 616 -NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 616 -~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 244 ~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 244 NLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 2 269999999999988765 5778999999765
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-35 Score=312.97 Aligned_cols=299 Identities=13% Similarity=0.160 Sum_probs=223.9
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEe-cC-CCCeEEEEEEcCCCCEEEEEeec
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDY-DA-PGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~-~~-~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.+++..+.+|...|.+++|++ + +|++|+.|++|++||+..+. ....+ .. |...|.+++|+|++++|++++.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~- 78 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF- 78 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-
T ss_pred cccceeeccCCCceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-
Confidence 456788899999999999875 3 89999999999999998753 23334 33 7789999999999999999986
Q ss_pred CCCCceEEEEeCCC-------CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-C---eeEEEeecCCC
Q 002264 560 KDGDSFLVEWNESE-------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-V---NILTSTDAEGG 628 (945)
Q Consensus 560 ~d~~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~ 628 (945)
|+.|++||+.. .+.+..+.+|.. .+.+++|+|++++|++|+.|+.|++||++. + +++..+..|
T Consensus 79 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-- 152 (330)
T 2hes_X 79 ---DSTVSIWAKEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH-- 152 (330)
T ss_dssp ---TSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC--
T ss_pred ---CCcEEEEEcccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--
Confidence 89999999853 356677888876 899999999999999999999999999943 2 455566554
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc-cccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
...|.+++|+|++.+|++++.|++|++|+..++. ..+
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~------------------------------------------ 190 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV------------------------------------------ 190 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------------------------------------------
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE------------------------------------------
Confidence 4489999999999999999999999999975431 000
Q ss_pred CCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC--CCeEEEeeec
Q 002264 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALGSN 785 (945)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~~d 785 (945)
..+. +|...|.+++|+|+ +..|++++.|
T Consensus 191 -----------------------------------------------~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 191 -----------------------------------------------AVLN---GHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp -----------------------------------------------EEEC---CCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred -----------------------------------------------EEcc---CCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 0111 16666777777776 5567777777
Q ss_pred CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEE
Q 002264 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM 865 (945)
Q Consensus 786 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~ 865 (945)
++|++|++.... . .+. . ...+.
T Consensus 221 ~~v~iw~~~~~~--------------------------------~-----------~~~----------~-----~~~~~ 242 (330)
T 2hes_X 221 STVRVWKYMGDD--------------------------------E-----------DDQ----------Q-----EWVCE 242 (330)
T ss_dssp SCEEEEEEEEEC--------------------------------T-----------TSC----------E-----EEEEE
T ss_pred CeEEEEEecCCC--------------------------------c-----------ccc----------c-----eeEEe
Confidence 777777642100 0 000 0 01234
Q ss_pred EEecC-CCCCeeEEEeecCCCceEEEeecCceEEEEecccce--EEE-EecCCCc-ceeEEEecC--CcceeeeecCCce
Q 002264 866 TTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKS-KLKGHQK-RITGLAFST--SLNILVSSGADAQ 938 (945)
Q Consensus 866 ~~~~~-h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~--~~~-~l~~h~~-~V~~l~~s~--dg~~l~s~~~Dg~ 938 (945)
..+.+ |...|.+++|++ ++ +|++|+.||.|+|||..+++ .+. .+.+|.. .|.+++|+| ++++|+|++.||+
T Consensus 243 ~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eecccccccceEEEEEcC-CC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 45554 889999999997 65 89999999999999998874 333 3467887 899999999 7899999999999
Q ss_pred EEEEecC
Q 002264 939 VTLCVEH 945 (945)
Q Consensus 939 i~vWdl~ 945 (945)
|+|||+.
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999973
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=342.74 Aligned_cols=349 Identities=9% Similarity=0.036 Sum_probs=245.0
Q ss_pred CCccEEEEEEcCCC---------CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 405 h~~~V~~i~~s~~g---------~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .|++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999876420 01368888 899999999
Q ss_pred cEEEEe-CCCce----EEEecCCCCCEEEEEeeec----CCccEEEEEEcCCeEEEEEccCCCe-----------eEEec
Q 002264 476 LIKVWE-LSGRK----LFNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (945)
Q Consensus 476 ~i~vwd-~~~~~----~~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 535 (945)
+|+||| ..++. ...+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..+.. ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 55553 2446678889999999986 3467999999999999999976542 23566
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEE--EEcCCC-CEEEEEECCCcEEE
Q 002264 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (945)
Q Consensus 536 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~l~~~~~dg~i~i 611 (945)
.|...|++++|++++ .|++++. |+.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999864 7888875 9999999999774 4556778876 78888 578887 89999999999999
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
||++++++...+..+.....|.+++|+|+++.+++++.|++|++||++++. ....
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~------------------------ 392 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHP------------------------ 392 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEE------------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-ccee------------------------
Confidence 999988776666554332358899999999999999999999999987651 1100
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEE
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 771 (945)
+. +|...|.+++
T Consensus 393 -----------------------------------------------------------------l~---gH~~~V~sva 404 (524)
T 2j04_B 393 -----------------------------------------------------------------LV---SRETTITAIG 404 (524)
T ss_dssp -----------------------------------------------------------------EE---ECSSCEEEEE
T ss_pred -----------------------------------------------------------------ee---cCCCceEEEE
Confidence 01 1778899999
Q ss_pred EecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCC
Q 002264 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (945)
Q Consensus 772 ~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd 851 (945)
|+|+|+.|++++.||+|++|++.... +....+ .....+...+++++|+|+++.+...
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~~-- 461 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRID-- 461 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEEC--
T ss_pred eCCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEcc--
Confidence 99999999999999999999753211 000000 0000022357899999999866332
Q ss_pred CeEEEEecc-CceEEEEecCCCCCeeEEEeecCCC---ceEEEeecCceEEEEeccc
Q 002264 852 GKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 852 ~~i~iwd~~-~~~~~~~~~~h~~~i~~l~~s~~~~---~~lasg~~dg~v~vwd~~~ 904 (945)
+.+.+|+.. ++.++.++.+|...|.+|+|+| ++ .+||+|+.||.|+||++..
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 233344433 4677888999999999999999 64 5999999999999999864
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-34 Score=326.54 Aligned_cols=342 Identities=19% Similarity=0.305 Sum_probs=264.6
Q ss_pred cccCCCccE-EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 401 IFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 401 ~~~~h~~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|++++ .+++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 467888775 66666 57899999999999999999987665 678999999999999877 6899999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+++.+..+.+|...|.+++|++.+++.++++++.||.|++||+.+............. ..+.+.++
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~--------- 257 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPE--------- 257 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS-SEEESCGG---------
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc-ceEeeccC---------
Confidence 99 88999999999999999999998778899999999999999999876544332211110 00111111
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
........+.+|.. .+.++ +++++++++++.||.|++||+.+++.+..+..+. ..|.+++|+
T Consensus 258 -------------~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~ 319 (464)
T 3v7d_B 258 -------------ENPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYD 319 (464)
T ss_dssp -------------GCTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEE
T ss_pred -------------CCeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEc
Confidence 11223344555554 45444 6778999999999999999999999998887654 489999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
|+++++++|+.||.|++||+.++. .+..
T Consensus 320 ~~~~~l~sg~~dg~i~vwd~~~~~-~~~~--------------------------------------------------- 347 (464)
T 3v7d_B 320 HERKRCISASMDTTIRIWDLENGE-LMYT--------------------------------------------------- 347 (464)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTE-EEEE---------------------------------------------------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCc-EEEE---------------------------------------------------
Confidence 999999999999999999987651 1100
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
T Consensus 348 -------------------------------------------------------------------------------- 347 (464)
T 3v7d_B 348 -------------------------------------------------------------------------------- 347 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeE
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF 877 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~ 877 (945)
+.+ |...|.+++|+ ++++++++ ||+|++||+.+++...... |...+..
T Consensus 348 --------------------------~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~ 396 (464)
T 3v7d_B 348 --------------------------LQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAI 396 (464)
T ss_dssp --------------------------ECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCE
T ss_pred --------------------------EeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccE
Confidence 001 45556666665 45677776 7778888887776655554 6677889
Q ss_pred EEeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 878 l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++|++ ++++|++|+ ||.|++||+.+++.+.. +.+|.+.|++++|+ +...+++++.||.+.+|-+
T Consensus 397 ~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 397 TTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999 899999998 99999999999999986 67899999999997 4456666677887766654
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.1e-34 Score=321.45 Aligned_cols=277 Identities=18% Similarity=0.283 Sum_probs=242.3
Q ss_pred EeecCCCcE-EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V-~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
...+|.+.| +|+ +++|+ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+
T Consensus 113 ~l~~h~~~v~~~~--~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 113 VLKGHDDHVITCL--QFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEECSTTSCEEEE--EEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--
T ss_pred EecccCCCcEEEE--EEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--
Confidence 345687765 554 45677 59999999999999999887663 377899999999997
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999987665 677999999999996 45 799999999999999 889999999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
|.++++ ++.++++++.||.|++||++++.....+..+...|.++.| ++.++++++. ++.|++||+.+++.
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNC 311 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCE
Confidence 999987 4578999999999999999999988899989999999999 7889999885 89999999999999
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECCCcEEE
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~dg~i~i 655 (945)
+..+.+|.. .+.++.+ +++.+++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++
T Consensus 312 ~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 312 IHTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL 386 (445)
T ss_dssp EEEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred EEEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE
Confidence 999988876 6666666 46799999999999999999999998887632 45589999995 679999999999999
Q ss_pred EECCCC
Q 002264 656 LANAIG 661 (945)
Q Consensus 656 w~~~~~ 661 (945)
||+.++
T Consensus 387 wd~~~~ 392 (445)
T 2ovr_B 387 WDLKTG 392 (445)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 999877
No 56
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-36 Score=339.36 Aligned_cols=358 Identities=10% Similarity=0.060 Sum_probs=254.2
Q ss_pred cceEEeecCCCcEEEEEEeCCC---------CeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 335 RTVAVSLHQGSTVISMDFHPSH---------QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g---------~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
.....++.+.+.|++|+|+|++ + +||+|+.++. . .
T Consensus 124 ~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~--------~--~------------------------- 167 (524)
T 2j04_B 124 KRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYM--------D--E------------------------- 167 (524)
T ss_dssp CSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC---------------------------------------
T ss_pred CcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEeccc--------C--C-------------------------
Confidence 4556677788999999999997 5 6888875532 0 0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccc-ceeeccccccEEEEEEecC------CCeeEEEEEeCCCcEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYP------NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~~------~~~~~l~s~s~d~~i~ 478 (945)
..+|+++.+++++.|++|+||++.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.||+|+
T Consensus 168 -------~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 168 -------PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred -------ccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 1268999999999999999999988764321 1245678899999999997 45 899999999999
Q ss_pred EEe-CCCc-----------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEE-
Q 002264 479 VWE-LSGR-----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTM- 544 (945)
Q Consensus 479 vwd-~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~- 544 (945)
+|| ..+. +...+.+|...|++++|++ + ..|++|+.||+|++||++++. ....+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999 4443 1246788999999999975 3 479999999999999998764 345678899999999
Q ss_pred -EEcCCC-CEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 545 -LYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 545 -~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
.|++++ .+|++++. |++|++||+++++....+.+|.. ..+.+++|+|++..+++++.|+.|++||++++.++.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 88899986 99999999999888777777654 246789999999999999999999999999998877
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCc
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~ 701 (945)
.+..|. ..|++++|+|+|++|++|+.||+|++|++..+ .+..............+..++|+|+|..+.
T Consensus 392 ~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-------- 459 (524)
T 2j04_B 392 PLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-------- 459 (524)
T ss_dssp EEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE--------
T ss_pred eeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE--------
Confidence 777654 48999999999999999999999999998643 222211110011112366788888886431
Q ss_pred cccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC---e
Q 002264 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV---G 778 (945)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~---~ 778 (945)
.. +..++|.... .+. ....+.+ |...|.+++|+|++. .
T Consensus 460 ------------------------------~~--~~~~~~~~~~---~g~-~~~~l~g---h~~~V~~Vafsp~~~~~~~ 500 (524)
T 2j04_B 460 ------------------------------ID--SSYEVYPLTV---NDV-SKAKIDA---HGINITCTKWNETSAGGKC 500 (524)
T ss_dssp ------------------------------EC--CCCCCCC--------------------CCCSCCCEEECCSTTTTTE
T ss_pred ------------------------------cc--CCceeccccc---CCc-ceeeecC---CCceEEEEECCCCCCccHH
Confidence 11 1222332210 011 1123333 889999999999964 8
Q ss_pred EEEeeecCeEEEEeecC
Q 002264 779 LLALGSNGVQKLWKWHR 795 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~ 795 (945)
+++++.+|.|+||++..
T Consensus 501 lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECTTSEEEEEECSC
T ss_pred HHhhccCceEEEEEccc
Confidence 99999999999998643
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=315.71 Aligned_cols=290 Identities=12% Similarity=0.117 Sum_probs=255.1
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
......+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEc
Confidence 3455567999999999999999 59999999999999999887653 377899999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CCCc----
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR---- 485 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~~~---- 485 (945)
|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|++. ++++++.+ +.|++|| ..+.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987665 344 888999999999999 88999988 9999999 4332
Q ss_pred -------eEEEecCCCC--CEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 486 -------KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 486 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3445556666 899999987 568999999999999999998 6677788888899999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC--------------cEEEEECCCCeeEE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILT 621 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~ 621 (945)
++. ++.|++||+.+++.+..+.. . ..+..++|+|++.++++++.++ .+++||..+++.+.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S-SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C-CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 985 89999999999999888873 2 3688999999999999999888 89999999999999
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+..+.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 310 ~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 310 RVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred heecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 8877654 8999999999999999999999999999865
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-35 Score=324.41 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=250.0
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--- 417 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--- 417 (945)
.+|.+.|++++|+| + +|++|+.||+|+|||+.+++.... ++ ....+.+|...|.+++|+|+
T Consensus 13 ~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~--~~-----------~~~~~~~h~~~v~~~~~~~~~~~ 76 (397)
T 1sq9_A 13 KAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENP--KD-----------KSYSHFVHKSGLHHVDVLQAIER 76 (397)
T ss_dssp SCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCG--GG-----------GEEEEECCTTCEEEEEEEEEEET
T ss_pred hhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccC--CC-----------cceEEecCCCcEEEEEEeccccc
Confidence 35999999999999 4 699999999999999988762210 00 11336689999999999999
Q ss_pred -C---CEEEEEECCCcEEEEEccCCcc-----cccceeeccc-----cccEEEEEEe----cCCCeeE-EEEEeCCCcEE
Q 002264 418 -G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDDKLIK 478 (945)
Q Consensus 418 -g---~~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h-----~~~v~~l~~s----~~~~~~~-l~s~s~d~~i~ 478 (945)
| ++|++++.||.|++|++.+++. +. .+..| ...|.+++|+ |++. + |++++.|+.|+
T Consensus 77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTY 151 (397)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEE
T ss_pred CCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEE
Confidence 9 9999999999999999998875 44 56677 5999999999 9999 8 99999999999
Q ss_pred EEe-CC------CceEE-----Ee-------cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC---
Q 002264 479 VWE-LS------GRKLF-----NF-------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--- 536 (945)
Q Consensus 479 vwd-~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 536 (945)
+|| .. ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++......+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 999 65 55555 66 45889999999977 56 999999999999999999888888888
Q ss_pred C---CCeEEEEEEcCCCCEEEEEeecCCCC---ceEEEEeCCCCceeeEecc-------------ccCcceEEEEEcCCC
Q 002264 537 P---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQFDTTQ 597 (945)
Q Consensus 537 ~---~~~i~~~~~s~~~~~l~~~~~~~d~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 597 (945)
| ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCC
Confidence 7 889999999999999999986 7 8999999999999999988 665 89999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEee------cC-------------CCCCCccEEEEcCCC----------CEEEEEE
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLLAVTT 648 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~sp~g----------~~l~~~~ 648 (945)
++|++++.||.|++||+.+++.+..+. .+ .|...|.+++|+|+| ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999999988 44 014589999999998 7999999
Q ss_pred CCCcEEEEECCCC
Q 002264 649 ADNGFKILANAIG 661 (945)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (945)
.||.|++|++.++
T Consensus 384 ~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 LDRSIRWFREAGG 396 (397)
T ss_dssp TTTEEEEEEEEC-
T ss_pred CCCcEEEEEcCCC
Confidence 9999999999765
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.6e-34 Score=321.77 Aligned_cols=314 Identities=18% Similarity=0.301 Sum_probs=268.0
Q ss_pred eeccccccE-EEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEE
Q 002264 446 QIDAHVGAV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (945)
Q Consensus 446 ~~~~h~~~v-~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (945)
.+.+|.+.| .+ ++++++ ++++|+.||+|++|| .+++.+..+.+|...|.+++|+ +.++++|+.||+|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEE
Confidence 577898875 54 445677 899999999999999 8899999999999999999985 3589999999999999
Q ss_pred EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
|+.+++....+..|...|.++.++ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++++ +++.++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999999999999999999999995 567888885 89999999999999999988876 7888888 68899999
Q ss_pred ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
+.||.|++||+++++.+..+..+. ..|.+++| ++.++++++.||.|++||+.++. ....+
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~--------------- 315 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTL--------------- 315 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEE---------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEE---------------
Confidence 999999999999999998887654 48999999 78999999999999999987651 11000
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
T Consensus 316 -------------------------------------------------------------------------------- 315 (445)
T 2ovr_B 316 -------------------------------------------------------------------------------- 315 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCC
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg 843 (945)
.+ |...+.++++ ++
T Consensus 316 --------------------------------------------------------------~~--~~~~v~~~~~--~~ 329 (445)
T 2ovr_B 316 --------------------------------------------------------------TG--HQSLTSGMEL--KD 329 (445)
T ss_dssp --------------------------------------------------------------CC--CCSCEEEEEE--ET
T ss_pred --------------------------------------------------------------cC--CcccEEEEEE--eC
Confidence 00 3333444444 45
Q ss_pred ceEEecC-CCeEEEEeccCceEEEEecC---CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe-----cCC
Q 002264 844 SYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-----KGH 914 (945)
Q Consensus 844 ~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l-----~~h 914 (945)
+++++|+ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence 6777777 88899999988888888886 888899999964 69999999999999999999999888 578
Q ss_pred CcceeEEEecCCcceeeeecCCce----EEEEecC
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQ----VTLCVEH 945 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~----i~vWdl~ 945 (945)
.+.|++++|+|++.+|++++.||+ |.|||+.
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 899999999999999999999998 9999984
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-33 Score=320.20 Aligned_cols=282 Identities=16% Similarity=0.250 Sum_probs=244.3
Q ss_pred eEEeecCCCc-EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSLHQGST-VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~~h~~~-V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
.....+|.+. ++|+.|+ ++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~ 171 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYA 171 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEc
Confidence 3444568777 4676664 55 59999999999999999887653 367899999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec--CCCeeEEEEEeCCCcEEEEe-CCCc-------
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGR------- 485 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~~~l~s~s~d~~i~vwd-~~~~------- 485 (945)
|++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp STT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccc
Confidence 988 99999999999999999987665 6788999999999995 556 899999999999999 5443
Q ss_pred ----------------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 486 ----------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 486 ----------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
.+..+.+|...+.++. + ++.++++++.||.|++||+.+++....+..+...|.+++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEc--C--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 2567788999998884 3 4579999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
++++++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++........ .
T Consensus 322 ~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~ 391 (464)
T 3v7d_B 322 RKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH---T 391 (464)
T ss_dssp TTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC---T
T ss_pred CCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC---C
Confidence 999999985 89999999999999999999877 78889987 57999999999999999999887666542 2
Q ss_pred CCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..++|+|+++++++++ ||.|++||+.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3678899999999999998 899999999887
No 61
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-34 Score=305.54 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=249.9
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.....+ +|.+.|++++| |+++ +|++|+.||.|++||+.+++.. ..+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~-------------------~~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLG-------------------TVVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEE-------------------EEEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEE-------------------EEeecCCccEEEEEE
Confidence 344444 49999999999 8998 4999999999999999877654 236678999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 494 (945)
+|++++|++|+.||.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876555555578899999999999 466 899999999999999 777888899999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
..+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999874 457999999999999998 4455556665 778999999999998 777764 89999999999
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998876 89999999998 689999999999999999999999887654 899999999998 5678999999
Q ss_pred EEEECCCC
Q 002264 654 KILANAIG 661 (945)
Q Consensus 654 ~iw~~~~~ 661 (945)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
No 62
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.7e-34 Score=307.54 Aligned_cols=210 Identities=19% Similarity=0.250 Sum_probs=180.7
Q ss_pred ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-----ceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-----RKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 442 ~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
....+|.+|.+.|++++|+|++.. +|+|||.|++|++|| .++ .+...+.+|...|.+++|+| ++.+|++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~~ 105 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSGS 105 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEEc
Confidence 334478999999999999998433 899999999999999 443 24678899999999999977 668999999
Q ss_pred cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE-eccccCcceEEEEEc
Q 002264 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFD 594 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~ 594 (945)
.|+.|++|+............+...+..+.+++++..+++++. ++.+++||......... ..+|.. .+..++|+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEEC
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEc
Confidence 9999999999998888888888888999999999999999985 89999999987655443 344444 78889998
Q ss_pred CCC--CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 595 TTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 595 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++ ..+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.||.|++||+.+.
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 764 578889999999999999999998887664 48999999999999999999999999998755
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-35 Score=331.97 Aligned_cols=294 Identities=17% Similarity=0.237 Sum_probs=237.1
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~ 419 (945)
..|...|+|++|+|.+..+||+|+.||+|+|||+.+++.... ..+.+|.+.|++|+|+| ++.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCC
Confidence 458889999999996555799999999999999987764321 22568999999999998 789
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~ 499 (945)
+|++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.||.|++||.+++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 99999999999999998753 222222234555788999999999 899999999999999778888899999999999
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE---ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
++|+|.. ..++++++.|+.|++||+++...... ...|...|++++|+|+|++|++++. |+.|++||+.++..
T Consensus 256 v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC 330 (435)
T ss_dssp EEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS
T ss_pred eeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc
Confidence 9998864 35889999999999999987665433 3457789999999999999999986 89999999999988
Q ss_pred eeEeccccCc-----ceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeeEEEeecCCCCCCccEE-EEc
Q 002264 577 KRTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFS 638 (945)
Q Consensus 577 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 638 (945)
...+..|... ......|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEEC
Confidence 7777655431 122356777777776664 3457999999999998877543 33477877 699
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|++|++|+ |+.|+||+++++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999877
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=317.36 Aligned_cols=296 Identities=13% Similarity=0.209 Sum_probs=242.9
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCeEEEEEeC---cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE
Q 002264 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (945)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (945)
......+. |...|++++|+|+|.+++++|+. ||.|+|||+.+++.... ...+|...|.
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~ 69 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIK 69 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEE
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEE
Confidence 33444444 99999999999999878888887 99999999998765421 1236889999
Q ss_pred EEEEcCC---CCEEEEEECCCcEEEEEccCCc-ccccceeeccccccEEEEEE------ecCCCeeEEEEEeCCCcEEEE
Q 002264 411 RVAWSPD---GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 411 ~i~~s~~---g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~------s~~~~~~~l~s~s~d~~i~vw 480 (945)
+++|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|
T Consensus 70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVW 144 (357)
T ss_dssp EEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEE
T ss_pred EEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEE
Confidence 9999998 7999999999999999999886 444 67799999999965 67888 89999999999999
Q ss_pred e-CCCc-eEEEecCCCC----CEEEEEeee--cCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC---C
Q 002264 481 E-LSGR-KLFNFEGHEA----PVYSICPHH--KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---D 549 (945)
Q Consensus 481 d-~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---~ 549 (945)
| .+++ .+..+..|.. .+.+++|.+ .+++.++++++.||.|++||+++...... ..+...|.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC
Confidence 9 6665 6777766554 788888422 23678999999999999999998776443 55677899999999 9
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEec-----cccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCC------
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV------ 617 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~------ 617 (945)
+.++++++. ++.|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||++++
T Consensus 224 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 224 MNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp CCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 999999885 8999999999877665554 6665 899999999998 8999999999999999764
Q ss_pred -------------eeEEEeecCCCCCCccEEEEcCCCCEEE-EEECCCcEEEEECCCC
Q 002264 618 -------------NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (945)
Q Consensus 618 -------------~~~~~~~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~i~iw~~~~~ 661 (945)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344555544 45899999999999998 8999999999999765
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-34 Score=317.55 Aligned_cols=292 Identities=15% Similarity=0.107 Sum_probs=246.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC--cccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+ ..+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-------------------HELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-------------------EEEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEee-------------------eeecCCCCcccEEEEeCCCCE
Confidence 888999999999999 59999999999999998875 33 236789999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc----eEEEecCCCC
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR----KLFNFEGHEA 495 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~----~~~~~~~~~~ 495 (945)
|++++.||.|++||+.+++.... ..+..|...|.+++|+|+++ +|++++.|+.|++|| ..+. ......+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 99999999999999988764332 23567999999999999999 899999999999999 5554 2333467899
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEcc------------------CCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.|.+++|+| ++.+|++++.||.|++||++ .+.....+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999987 56899999999999999954 5566777778888999999999999999998
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeeE---------------
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNIL--------------- 620 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (945)
. ++.|++||+++++.+..+..+.. .+.+++|+|++.+++++ .||.|++|++.+ +...
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 89999999999999999998866 78999999999877776 999999999987 4310
Q ss_pred -----------------------EEeecCCCCCCccEEEEc-CCC---CEEEEEECCCcEEEEECCCCccccc
Q 002264 621 -----------------------TSTDAEGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~v~~s-p~g---~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
..+. .+|...|++++|+ ++| .+|++++.||.|++|++.++.+.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 2455689999976 677 9999999999999999987654443
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.2e-35 Score=321.88 Aligned_cols=290 Identities=15% Similarity=0.236 Sum_probs=242.3
Q ss_pred cCCCcEEEEEEeCC---CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-
Q 002264 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (945)
Q Consensus 342 ~h~~~V~~v~fsp~---g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~- 417 (945)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999984 443566666688999999987765431 1 11112347789999999999
Q ss_pred ---CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCceEEEe--
Q 002264 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (945)
Q Consensus 418 ---g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-- 490 (945)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.||.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987665 6778999999999999 788 899999999999999 788888888
Q ss_pred -cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec----------------------------CCCCeE
Q 002264 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (945)
Q Consensus 491 -~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i 541 (945)
.+|...|.+++|+| ++.+|++++.||.|++||+++......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999987 56899999999999999998765433222 377889
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce--------------eeEeccccCcceEEEEEcCC--CCEEEEEEC
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 605 (945)
.+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 778888875 89999999987644 667777766 6888999999 999999999
Q ss_pred CCcEEEEECCCCe----eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 606 DSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 606 dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875 34466666546689999999999999999999999999985
No 67
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=317.26 Aligned_cols=315 Identities=11% Similarity=0.071 Sum_probs=246.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
-...|.+++|||||+ ++||++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 346899999999999 699999999999 6444332 46899999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCC-----CE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PV 497 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----~v 497 (945)
.++.+.+|+.+....+ .+ .|...|.+++|||+|+ .|++++.||.|++||..+ ++..+. |.. .+
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 5665555554322211 22 4688999999999999 899999999999999444 667777 665 49
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-------eEEe----cCCCCeEEEEEEcCCCCEEEEEeecCCCCceE
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 566 (945)
.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999987 679999999999999999988752 3444 5566799999999999 666664 8999
Q ss_pred EEEeCCCCce---eeEec-cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE--cCC
Q 002264 567 VEWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKE 640 (945)
Q Consensus 567 ~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--sp~ 640 (945)
++||+.++.. .+++. +|. ..|..++|+ ++.+++++ ++.|++||+.+++......+ |...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCC
Confidence 9999988774 34564 554 479999999 68888887 69999999998887443333 4558999999 999
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCC
Q 002264 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (945)
Q Consensus 641 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945)
+..+++++.||+ ++|... .++++||+..++
T Consensus 279 ~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a--------------------------- 308 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED----------------------ELHVTADNIIAP--------------------------- 308 (588)
T ss_dssp CEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHH---------------------------
T ss_pred CCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEE---------------------------
Confidence 999999999999 999875 145778876653
Q ss_pred CccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
+ .|+++++|+..... ...+ . +...|.+++|||||+.+++++.
T Consensus 309 ----------~--~d~~v~lW~~~g~~----l~~~---~---~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 ----------Y--LEKKFKKWSTIWNE----FNNY---E---TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----------H--HHHHHHHTTTTTTS----SSSS---C---CEEEEEEEEECTTSSEEEEEEE
T ss_pred ----------E--cCCEEEEEECCCCc----eeee---c---cceEEEEEEECCCCCEEEEEEe
Confidence 2 26889999875321 1111 1 4567999999999998888765
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=306.02 Aligned_cols=301 Identities=16% Similarity=0.228 Sum_probs=253.2
Q ss_pred eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
...+..|...|++++|+|++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSK----DSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEES----SSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeC----CCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3457788999999999999999999985 88999999999999999998877 899999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCCccccccccCCccccccCcceeeee
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 685 (945)
+||+.+++.+..+.. ...|.+++|+|+++++++++.+ |.|++|++....... .+.. .
T Consensus 100 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~--------------~ 161 (369)
T 3zwl_B 100 LWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH-ELTK--------------V 161 (369)
T ss_dssp EEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC-CEEE--------------E
T ss_pred EEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce-eecc--------------c
Confidence 999999999888873 3479999999999999999999 999999997652111 0000 0
Q ss_pred cccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCcc
Q 002264 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (945)
Q Consensus 686 s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (945)
. ......+. . .....
T Consensus 162 --~------------------------------------------------------------~~~~~~~~--~-~~~~~ 176 (369)
T 3zwl_B 162 --S------------------------------------------------------------EEPIHKII--T-HEGLD 176 (369)
T ss_dssp --C------------------------------------------------------------SSCSEEEE--C-CTTCC
T ss_pred --c------------------------------------------------------------cceeeecc--C-CcCcc
Confidence 0 00000010 0 00233
Q ss_pred ceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 766 ~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
.+.+++|+|+++.+++++.||.|++||+... +.. ...+.. |...|.+++|+|++++
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------~~~-~~~~~~--~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN---------------------YEY-VDSIDL--HEKSISDMQFSPDLTY 232 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT---------------------TEE-EEEEEC--CSSCEEEEEECTTSSE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---------------------cEe-EEEEec--CCCceeEEEECCCCCE
Confidence 8999999999999999999999999986421 111 111333 7889999999999999
Q ss_pred EEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCc--------------eEEEEecccceEEEE
Q 002264 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--------------TIHIYNVRVDEVKSK 910 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg--------------~v~vwd~~~~~~~~~ 910 (945)
|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++ .+++||+.+++.+..
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred EEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 99998 8999999999999998888 778899999999 899999999988 899999999999999
Q ss_pred ecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 911 LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 911 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+.+|...|++++|+|++++|++++.||.|++|++.
T Consensus 311 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred eecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 99999999999999999999999999999999974
No 69
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=5.1e-33 Score=346.84 Aligned_cols=495 Identities=12% Similarity=0.077 Sum_probs=349.4
Q ss_pred eeecCCCCc-cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc------CcEEEEEcCCCCcccccccccccc
Q 002264 318 VTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWDM 390 (945)
Q Consensus 318 v~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d------g~i~iwd~~~~~~~~~~~~~~~~~ 390 (945)
++|...+.- +|++.. +.......|...|.+++|||||++ ||.++.+ ..|.+|++.+++..
T Consensus 27 iaf~~~~~l~~~~~~g--g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~---------- 93 (1045)
T 1k32_A 27 IIFVCCDDLWEHDLKS--GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK---------- 93 (1045)
T ss_dssp EEEEETTEEEEEETTT--CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE----------
T ss_pred EEEEECCcEEEEECCC--CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE----------
Confidence 444443221 455443 455667779999999999999996 6655433 48999999877532
Q ss_pred cccCcccccccccCCCccE-------EEEEEcCCCCEEEEEECC------CcEEEEEccCCcccccceeeccccccEEEE
Q 002264 391 AACSLPFQASIFKDVPISV-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457 (945)
Q Consensus 391 ~~~~~~~~~~~~~~h~~~V-------~~i~~s~~g~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l 457 (945)
.+..|...+ .+++|||||+++++++.+ ..|.+|++.+++... +..+ ....+
T Consensus 94 ----------~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~ 157 (1045)
T 1k32_A 94 ----------RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHI 157 (1045)
T ss_dssp ----------ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEE
T ss_pred ----------EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--Cccee
Confidence 266788888 999999999977777654 358888887765332 2223 23467
Q ss_pred EEecCCCeeEEEEEeC------------CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 458 AFAYPNKLLCVVTCGD------------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 458 ~~s~~~~~~~l~s~s~------------d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
+|+| | ++++++. +...++|. ..+.....+.+|...+.++.|++ + .++++++.|+.+.+|.
T Consensus 158 ~~sp-G---~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~ 230 (1045)
T 1k32_A 158 LFAD-G---RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYS 230 (1045)
T ss_dssp EEET-T---EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEE
T ss_pred eeCC-C---EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEE
Confidence 7999 6 4666642 34567776 33355666789999999999975 4 6777888899999998
Q ss_pred ccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc----------CcceEEEEE
Q 002264 525 YDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQF 593 (945)
Q Consensus 525 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~ 593 (945)
++. +.....+..+. .+...+|+|||+.++++. ++.|++||+...... .+.++. ...+..++|
T Consensus 231 ~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~ 303 (1045)
T 1k32_A 231 TDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDF 303 (1045)
T ss_dssp EETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEE
T ss_pred EeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceEee-eeccCcccccccccccccccceeee
Confidence 765 33334444443 356679999999998875 789999999544433 444421 124778999
Q ss_pred c-CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC-CccEEEEcCCCCEEEEEECCCcEE-EEECCCCccccccccC
Q 002264 594 D-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVEN 670 (945)
Q Consensus 594 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~ 670 (945)
+ |+|+.+++++ ++.|++|+..++.... +. .+.. .+..++|+ ||+.+++++.++.+. +|++.++.. ..+.+
T Consensus 304 S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l~~ 376 (1045)
T 1k32_A 304 SPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKFEE 376 (1045)
T ss_dssp EECGGGCEEEEE-TTEEEEECTTSSBEEE-CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EECCC
T ss_pred cCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEecC
Confidence 9 9999999888 7899999998887554 32 2233 67899999 999999999988888 999877632 22222
Q ss_pred CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC
Q 002264 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (945)
Q Consensus 671 ~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (945)
+ ...+..++|+|||+.++ +++.++.+++|++.. +
T Consensus 377 ~-----~~~~~~~~~SpDG~~la-------------------------------------~~~~~~~v~~~d~~t----g 410 (1045)
T 1k32_A 377 N-----LGNVFAMGVDRNGKFAV-------------------------------------VANDRFEIMTVDLET----G 410 (1045)
T ss_dssp C-----CCSEEEEEECTTSSEEE-------------------------------------EEETTSEEEEEETTT----C
T ss_pred C-----ccceeeeEECCCCCEEE-------------------------------------EECCCCeEEEEECCC----C
Confidence 2 23477899999988874 455567899999864 2
Q ss_pred cceeeecCCCCCCccceEEEEEecCCCeEEEeeecC----------eEEEEeecCCCCCCCCceeeeeccccccCCCccc
Q 002264 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG----------VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 751 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg----------~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (945)
....+ ... |...+.+++|+|||++|++++.++ .|++||+. +++.
T Consensus 411 ~~~~~-~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----------------------~g~~ 464 (1045)
T 1k32_A 411 KPTVI-ERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME----------------------GRKI 464 (1045)
T ss_dssp CEEEE-EEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT----------------------TTEE
T ss_pred ceEEe-ccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC----------------------CCcE
Confidence 22222 112 677889999999999999887754 78888643 3321
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCce------------------------------------
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK------------------------------------ 863 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~------------------------------------ 863 (945)
. .+.. |...+.+++|+|||++|++++ ++...+|+.....
T Consensus 465 ~--~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1045)
T 1k32_A 465 F--AATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540 (1045)
T ss_dssp E--ECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred E--EeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence 1 1333 667788899999999999887 4555555432111
Q ss_pred -------EEEEecCCCCCeeEEEeecCCCceEEE-------------eecCceEEEEecccceEEEEecCCCcceeEEEe
Q 002264 864 -------VMTTFMSPPPASTFLAFHPQDNNIIAI-------------GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (945)
Q Consensus 864 -------~~~~~~~h~~~i~~l~~s~~~~~~las-------------g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 923 (945)
.+..+..|.+.+..++++| ++.++++ ......|++||+.+++.. .+. ..+.+++|
T Consensus 541 d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~ 615 (1045)
T 1k32_A 541 DLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRL 615 (1045)
T ss_dssp CCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEE
T ss_pred cccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEE
Confidence 1233445667789999999 8887775 123557899999888743 333 66889999
Q ss_pred cCCcceeeeecCCceEEEEec
Q 002264 924 STSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 924 s~dg~~l~s~~~Dg~i~vWdl 944 (945)
||||++|++++.| .|++||+
T Consensus 616 S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 616 SADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp CTTSCEEEEEETT-SCEEEEE
T ss_pred CCCCCEEEEEcCC-cEEEEeC
Confidence 9999999998877 7999997
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-33 Score=309.41 Aligned_cols=293 Identities=14% Similarity=0.221 Sum_probs=244.4
Q ss_pred EEeecCCCc--EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 338 AVSLHQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 338 ~~~~~h~~~--V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
....+|... +.+++|++ .. +++++.||.|++||+.+++.... ....|...|.+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EECTTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeCCCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 333345555 44566654 44 56677899999999998876531 122388999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C-CCceEEEecCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGH 493 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-~~~~~~~~~~~ 493 (945)
|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++|| . .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999987666 677899999999994 45 899999999999999 4 56778899999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...|.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAAT 293 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTT
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCC
Confidence 99999999987 5689999999999999999999888888889999999999998876665431 11389999999999
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
++.+..+..+ ..+.+++|+|+++.+++++ .||.|++||+.++..........+...|.+++|+|+|++|++++.||
T Consensus 294 ~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 294 GARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9998888643 3699999999999999954 89999999999987776655555566899999999999999999999
Q ss_pred cEEEEECCCCcc
Q 002264 652 GFKILANAIGLR 663 (945)
Q Consensus 652 ~i~iw~~~~~~~ 663 (945)
.|++|++.++..
T Consensus 372 ~i~iw~~~~~~~ 383 (401)
T 4aez_A 372 NLKFWRVYDGDH 383 (401)
T ss_dssp EEEEEECCC---
T ss_pred cEEEEECCCCcc
Confidence 999999988743
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-32 Score=307.57 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=241.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
..++|+||+++ +||+|. |++|+|||..+|+.... ..+.+|...|++|+|+|+|++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~-----------------~~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE-----------------EEecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999864 688886 99999999999986531 12557889999999999999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
.||.|++||+.+++.++ .+.+|...+.+++|+ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987766 678999999998886 45 899999999999999 4456778899999999999987
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCe----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
+ ++.++++++.|+.+++|+...++. ......+...|.+++|+|++..+++.+. +..|+.|++||+.+++....
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~-gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE-CTTTCEEEEEETTTTEEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe-ecCCCEEEEEeCCcccccee
Confidence 7 568999999999999999987653 3456677889999999997765543321 12488999999999999988
Q ss_pred eccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
+..+. .+..+.|+++++.+++++ .||.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.|++|+|||
T Consensus 317 ~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 317 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred ecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 87764 578899999999998876 78999999999999999998764 4899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.+.
T Consensus 393 v~~~ 396 (420)
T 4gga_A 393 CFEL 396 (420)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 9754
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.1e-33 Score=308.06 Aligned_cols=299 Identities=12% Similarity=0.136 Sum_probs=240.7
Q ss_pred eeccccccEEEEEEecCC-CeeEEEEEeCCCcEEEEe-CCCceEEEec--CCCCCEEEEEeeecCCccEEEEEEcCCeEE
Q 002264 446 QIDAHVGAVNDLAFAYPN-KLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~-~~~~l~s~s~d~~i~vwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (945)
.+.+|...|++++|+|++ + +|++|+.|+.|++|| .+++....+. +|...|.+++|+|. ++.+|++++.|+.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT--TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT--EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCC--EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEE
Confidence 577899999999999999 7 899999999999999 7677666665 69999999999874 357999999999999
Q ss_pred EEEccCCCeeEEecCC---CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 522 AWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
+||++. .....+..+ ...|.+++|+|+++++++++. ++.|++||+ +++.+..+.+|.. .+.+++|+|+++
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~ 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----TGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCD 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET----TSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCT
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC----CCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCC
Confidence 999986 444444433 367999999999999999985 899999999 5778888888876 899999999998
Q ss_pred -EEEEEECCCcEEEEECCC----CeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccCCc
Q 002264 599 -HFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672 (945)
Q Consensus 599 -~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (945)
.+++++.|+.|++||+++ +..+..+. +...|.+++|+| ++++|++++.|+.|++||+.++. ....+.++.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~ 293 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS-KPDQIIIHP 293 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT-SCSEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc-ccccccccc
Confidence 999999999999999998 66666663 344899999999 99999999999999999998762 222221111
Q ss_pred cccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcc
Q 002264 673 FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC 752 (945)
Q Consensus 673 ~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 752 (945)
...
T Consensus 294 ~~~----------------------------------------------------------------------------- 296 (383)
T 3ei3_B 294 HRQ----------------------------------------------------------------------------- 296 (383)
T ss_dssp BCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred eeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCC
Q 002264 753 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (945)
Q Consensus 753 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 832 (945)
..|...+. +.|+|+ .
T Consensus 297 --------~~~~~~~~-~~~~p~--------------------------------------------------------~ 311 (383)
T 3ei3_B 297 --------FQHLTPIK-ATWHPM--------------------------------------------------------Y 311 (383)
T ss_dssp --------CTTSCCCC-CEECSS--------------------------------------------------------S
T ss_pred --------cccccceE-EeccCC--------------------------------------------------------C
Confidence 00112222 233333 3
Q ss_pred ceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
.+..++|+||+++ +++ |+.|+|||+.+++++.++.+ |.+.+.+++|+| ++++|++|+ ||.|+|||+++
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 4556788999988 666 89999999999999999987 456788889999 899999997 99999999874
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-34 Score=319.28 Aligned_cols=296 Identities=13% Similarity=0.187 Sum_probs=240.4
Q ss_pred cceEEee--cCCCcEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCC---CCcccccccccccccccCcccccccccCCCcc
Q 002264 335 RTVAVSL--HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (945)
Q Consensus 335 ~~~~~~~--~h~~~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (945)
+.....+ +|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +.... .....+|...
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~h~~~ 113 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTYDCSST 113 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEEECSSC
T ss_pred ceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc-----------------eeeeccCCCC
Confidence 4555555 4899999999999 998 599999999999999876 33111 0112258999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcc---CCcccccce-----e--ecc--ccccEEEEE--EecCCCeeEEEEEeCC
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-----Q--IDA--HVGAVNDLA--FAYPNKLLCVVTCGDD 474 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~---~~~~~~~~~-----~--~~~--h~~~v~~l~--~s~~~~~~~l~s~s~d 474 (945)
|.+++|+|++++|++|+.||.|++||+. +++...... . +.. +...+.++. +++++. ++++|+.|
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d 191 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNL 191 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCC
Confidence 9999999999999999999999999995 444332110 1 111 556677777 557777 89999999
Q ss_pred CcEEEEe-CCCceEEEecC--CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcC--
Q 002264 475 KLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA-- 548 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~-- 548 (945)
+.|++|| .+++.+..+.+ |...|++++|+| ++.+|++|+.||.|++||++++.....+. .+...|.+++|+|
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 9999999 88999999988 899999999977 56899999999999999999988877775 5666899996654
Q ss_pred --CCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-------------------------CcceEEEEEcCCCCEEE
Q 002264 549 --DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 549 --~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~ 601 (945)
++.+|++++. ++.|++||+.+++.+..+.++. ...+.+++|+ ++++|+
T Consensus 270 s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 270 GKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp CTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 6778888875 8999999999999888877542 2347788999 778999
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCC-----------------------------------CCCCccEEEEcCC--CCEE
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GNLL 644 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~v~~sp~--g~~l 644 (945)
+|+.||.|++||+.+++....+..+. |...|++++|+++ +.+|
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 99999999999999988777766531 5568999999998 8899
Q ss_pred EEEECCCcEEEEE
Q 002264 645 AVTTADNGFKILA 657 (945)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (945)
++|+.||.|+||+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999994
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-35 Score=320.52 Aligned_cols=285 Identities=13% Similarity=0.091 Sum_probs=224.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC--CcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+ ..+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~-------------------~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHA-------------------RTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEEC-------------------CCBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEE-------------------EEEecCCceEEEEEEeCCCCE
Confidence 667999999999999 5999999999999999877 333 337789999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecC-CCC
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~-~~~ 495 (945)
|++|+.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334446778999999999999999 899999999999999 5555 3677777 999
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccC------------------CCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.|.+++|+| ++.+|++++.|+.|++||+.. +.....+ .+...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 568999999999999999853 2233344 7778899999999999999998
Q ss_pred ecCCCCceEEEEeCCCCce----eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------------
Q 002264 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--------------- 618 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 618 (945)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 89999999999887 778888876 79999999999988888766555 77664211
Q ss_pred ------------------------eEEEeec-----------CCCCCCccEEEEcCC-CC---EEEEEECCCcEEEEEC
Q 002264 619 ------------------------ILTSTDA-----------EGGLPNLPRLRFSKE-GN---LLAVTTADNGFKILAN 658 (945)
Q Consensus 619 ------------------------~~~~~~~-----------~~~~~~v~~v~~sp~-g~---~l~~~~~dg~i~iw~~ 658 (945)
....... ..|...|+++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 115568999997664 33 6999999999999985
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.4e-33 Score=330.76 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=215.4
Q ss_pred ccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCccc--ccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
..+.+|.+.|++++|+|+ +++|++|+.|++|++|++.++... .....+.+|...|.+++|+|+++ +|++|+.|++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCc
Confidence 357899999999999986 479999999999999999865432 12236789999999999999999 8999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe---cCCCCeEEEEEEcCCC--
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADG-- 550 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~~-- 550 (945)
|++|| .++..+..+.+|...|.+++|+| ++.+|++++.|++|++||.......... ..|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999 88889999999999999999987 5689999999999999997654332222 3466789999999987
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
..+++++. |+.|++||+++++....+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..+ .
T Consensus 532 ~~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~ 603 (694)
T 3dm0_A 532 PTIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---S 603 (694)
T ss_dssp CEEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---S
T ss_pred ceEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---C
Confidence 57888875 89999999999999999999887 8999999999999999999999999999999988777543 3
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|.+++|+|++.++++++ ++.|++||+.++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 799999999999888776 456999999887
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.9e-33 Score=308.57 Aligned_cols=252 Identities=9% Similarity=0.071 Sum_probs=216.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc---cccceeeccccccEEEEEEecC----C---CeeEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVV 469 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~----~---~~~~l~ 469 (945)
..+.+|.+.|++++|+| ++|++|+.||.|++|++.+++. ......+.+|...|.+++|+|+ + . +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 45789999999999999 8999999999999999998761 1123367789999999999999 8 8 899
Q ss_pred EEeCCCcEEEEe-CCCce-----EEEecCC-----CCCEEEEEeeec--CCccE-EEEEEcCCeEEEEEccC------CC
Q 002264 470 TCGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MG 529 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~ 529 (945)
+++.|+.|++|| .+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999 66766 8888888 599999999822 25678 99999999999999988 55
Q ss_pred eeE-----Ee-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc---c---cCcceEEE
Q 002264 530 SRV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVV 591 (945)
Q Consensus 530 ~~~-----~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~---~---~~~~~~~~ 591 (945)
... .+ ..+...+.+++|+|++ .+++++. ++.|++||+++++.+..+.. | .. .+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 554 55 4467789999999999 8888875 89999999999999999988 6 55 79999
Q ss_pred EEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 592 QFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 592 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
+|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999999998887611 344899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.++
T Consensus 320 ~~~~ 323 (397)
T 1sq9_A 320 VKTK 323 (397)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9877
No 77
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-33 Score=306.75 Aligned_cols=300 Identities=11% Similarity=0.108 Sum_probs=228.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcC-------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNG-------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
-..+|+|++|+|||+ +||+|+.|. .|++|++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 455899999999998 689987543 5999999776543211110 00112367888899888765
Q ss_pred CCCCEEEEEE-----------CCCcEEEEEccCCcccc-cc-----eeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLR-QH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 416 ~~g~~las~~-----------~dg~i~vwd~~~~~~~~-~~-----~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
++.+++|. .|+.+++|++.++.... .. .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 55666653 47789999987654321 11 1122455678999999999954455667899999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+|| .+++++..+. |...|.+++|+| +|+++++++.+ .+++|+..++..... ...+...|.+++|+|+++.+++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888876 778899999977 66899888855 566676666665543 3446668999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCce----eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe-ecCCCCC
Q 002264 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLP 630 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (945)
++.++.....+++|++..... ...+.+|.. .+.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987444444788999876643 345566665 7999999999999999999999999999999998875 444 45
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|++++|+|||++||+|+.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999755
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.2e-33 Score=304.41 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=214.1
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+..|.++|.+++|+|++++|++|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 112236778999999999999999 899999999999999
Q ss_pred -CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe----eEEecCCCCeEEEEEEcCCCCEEE
Q 002264 482 -LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 482 -~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.+++.. ..+..|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 666544 34477999999999987 568999999999999999998773 223355678999999999999999
Q ss_pred EEeecCCCCceEEEEeC------------------CCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 555 SCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
+++. ++.|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.||.|++||+++
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9985 899999995 46788888887766 799999999999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999998886644 89999999999988887 899999999977
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.2e-33 Score=292.77 Aligned_cols=252 Identities=19% Similarity=0.292 Sum_probs=212.4
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~ 478 (945)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. +...++.+|.++|.+++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 3678999999999999999999999999999999975321 223378899999999999864 77 899999999999
Q ss_pred EEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe--eEEecCCCCeEEEEEEcCC----
Q 002264 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD---- 549 (945)
Q Consensus 479 vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~---- 549 (945)
+|| .+++ .+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 6553 567788899999999999865578999999999999999987632 4566788889999999997
Q ss_pred ---------CCEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCCC---CEEEEEECCCcEEEEE
Q 002264 550 ---------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWD 613 (945)
Q Consensus 550 ---------~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd 613 (945)
+++|++++. |+.|++||+++++ ....+.+|.. .+.+++|+|++ .+|++++.|+.|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 568998885 8999999998765 5667888877 89999999984 8999999999999999
Q ss_pred CCCCe---eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+++.. ....+....+...|.+++|+|+|++||+++.||.|++|+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98743 222332234456899999999999999999999999999763
No 80
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=308.81 Aligned_cols=363 Identities=12% Similarity=0.117 Sum_probs=249.6
Q ss_pred CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------------CCCC
Q 002264 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------APGH 539 (945)
Q Consensus 474 d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~ 539 (945)
++.+++|+ ..++....+.+|.+.|++++|+|. ++.+|++++.||.|++||+.+......+. .+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 45677888 677778889999999999999772 45799999999999999999876654432 4778
Q ss_pred eEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEEEEECC
Q 002264 540 WCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 540 ~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 615 (945)
.|.+++|+| ++.++++++. ++.|++||+.+++....+... . .+..+.+++. +.++++++.||.|++||+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred cEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 999999999 7778888875 899999999999988887632 2 6788888884 4599999999999999999
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceec
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
+++.+..+..+. ..|.+++|+|+++ ++++++.||.|++||+.++......+..+.....
T Consensus 175 ~~~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------------ 234 (408)
T 4a11_B 175 SGSCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS------------------ 234 (408)
T ss_dssp SSCCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC------------------
T ss_pred CcceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc------------------
Confidence 999888887654 4899999999998 5999999999999999877433333322111000
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEec
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 774 (945)
..+ .... ..|...|.+++|+|
T Consensus 235 -----------------------------------------~~~---------------~~~~---~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 235 -----------------------------------------QAV---------------ESAN---TAHNGKVNGLCFTS 255 (408)
T ss_dssp -----------------------------------------CCT---------------TTSS---CSCSSCEEEEEECT
T ss_pred -----------------------------------------eee---------------cccc---ccccCceeEEEEcC
Confidence 000 0001 12788999999999
Q ss_pred CCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeE
Q 002264 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 854 (945)
Q Consensus 775 dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i 854 (945)
+++++++++.||.|++|++........ . .+.... . ..............+.+++++.++.|
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~---~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLV-----------N---YGKVCN----N-SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCC-----------C---CCCCCC----C-CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred CCCEEEEecCCCeEEEEECCCCcccee-----------c---cccccc----c-ccccceeEEecCCCceEEEEecCCEE
Confidence 999999999999999999764331100 0 000000 0 01122223333344555555559999
Q ss_pred EEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecC-Ccceeeee
Q 002264 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSS 933 (945)
Q Consensus 855 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~ 933 (945)
++||+.+++++..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +...+.+.
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSS 392 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeeccc
Confidence 9999999999999999999999999999 8999999999999999999999877665543322 23333 33456677
Q ss_pred cCCceEEEEecC
Q 002264 934 GADAQVTLCVEH 945 (945)
Q Consensus 934 ~~Dg~i~vWdl~ 945 (945)
+.|+.+++|+.+
T Consensus 393 ~~~~~~~~W~~~ 404 (408)
T 4a11_B 393 DEEGGTSAWSHP 404 (408)
T ss_dssp ------------
T ss_pred CccCceeecCCc
Confidence 889999999864
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=305.17 Aligned_cols=303 Identities=16% Similarity=0.180 Sum_probs=240.9
Q ss_pred eecCCCcEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-C
Q 002264 340 SLHQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~ 417 (945)
..+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.+++|+| +
T Consensus 39 ~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCC
Confidence 344999999999999 998 599999999999999998776532110000 0000112346999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC---CCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
+.+|++++.||.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++|| .+++.+..+.+|
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred CcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 8899999999999999999987654 23 37788999999984 44 789999999999999 888889999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEe---------------cCCCCeEEEEEEcCCCCEEEEEe
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDY---------------DAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
...|.+++|+|.+. .++++++.||.|++||++.... ...+ ..+...|.+++|+|++++|++++
T Consensus 186 ~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 186 RQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 99999999987532 3699999999999999987652 2222 45677899999999999999998
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
. ++.|++||+.+++....+..+.. ...........+..+++++.++.|++||+.+++.+..+..+. ..|.
T Consensus 265 ~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~v~ 338 (408)
T 4a11_B 265 T----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY--KTVD 338 (408)
T ss_dssp T----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS--SCEE
T ss_pred C----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC--CeEE
Confidence 5 89999999999876655443211 112222233445677788889999999999999999887664 4899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+++|+|++++|++++.||.|++|++.++.
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999999999999999999998873
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.3e-32 Score=290.18 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=235.7
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
...+|+||+++ +||+|. |++|+|||+.+++.+.. ..+.+|...|++++|+|++++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~-----------------~~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE-----------------EEecCCCCeEEEEEECCCCCEEEEEE
Confidence 35789999986 688876 99999999999887632 12567889999999999999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
.||+|++|++.+++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999997766 677899988876664 55 899999999999999 3446678889999999999987
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCe----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
+ ++.++++++.||.|++||+.+++. ......+...|.++.++|++..++.... ...++.|++||.........
T Consensus 160 ~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred C--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 6 568999999999999999987653 3345566778999999998776654322 23478999999998887766
Q ss_pred eccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..... .+..+.|+++++.+++++ .||.|++||+.+++++..+.+|. ..|++++|+|+|++|++|+.||+|+|||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 55433 588899999999988765 79999999999999999998764 4899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8653
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.5e-34 Score=311.12 Aligned_cols=289 Identities=10% Similarity=0.082 Sum_probs=214.3
Q ss_pred cceEEEEEcCCCCEEEEEECCC-------cEEEEECCCCe--------eEEEeecCCCCCCccEEEEcCCCCEEEEEE--
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDS-------QIKFWDMDNVN--------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-- 648 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~--------~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-- 648 (945)
.+|.+++|+|++++|++||.+. .|++|++..+. ....+....+...|.++++ ++..+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 4799999999999999988543 59999987643 2233334444456777766 456777664
Q ss_pred ---------CCCcEEEEECCCCccccccc---cCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCccc
Q 002264 649 ---------ADNGFKILANAIGLRSLRAV---ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (945)
Q Consensus 649 ---------~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (945)
.|+.+++|++.+........ ...........+.+++|+|||+++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~---------------------- 150 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI---------------------- 150 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE----------------------
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE----------------------
Confidence 46789999987653322221 11111122234678899999988742
Q ss_pred CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCC
Q 002264 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (945)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~ 796 (945)
++++.|++|++||+...... ..+ . |...|.+++|+|||+++++++.++ +.+|+...
T Consensus 151 -------------as~~~d~~i~iwd~~~~~~~---~~~---~---~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~- 206 (365)
T 4h5i_A 151 -------------ASSKVPAIMRIIDPSDLTEK---FEI---E---TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT- 206 (365)
T ss_dssp -------------EESCSSCEEEEEETTTTEEE---EEE---E---CSSCCCEEEECTTSSEEEEECSSC-EEEEETTT-
T ss_pred -------------EECCCCCEEEEeECCCCcEE---EEe---C---CCCceEEEEEccCCceEEecccee-EEEEEecc-
Confidence 46667899999998753221 111 1 667899999999999999888665 45554211
Q ss_pred CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CC----eEEEEeccCceE----EEE
Q 002264 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----KISLFNMMTFKV----MTT 867 (945)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~----~i~iwd~~~~~~----~~~ 867 (945)
..........+ |...|.+++|+||++++++++ ++ .+++|++..... ...
T Consensus 207 --------------------~~~~~~~~~~~--~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~ 264 (365)
T 4h5i_A 207 --------------------GSCIARKTDFD--KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ 264 (365)
T ss_dssp --------------------CCEEEEECCCC--TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred --------------------CcceeeeecCC--CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence 11111111223 788899999999999999998 55 488898876543 456
Q ss_pred ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 868 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 868 ~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+.+|...|++++||| ++++||+|+.|++|+|||+.+++++.. +.+|...|++|+|||||++|||+|.|++|+|||+|
T Consensus 265 ~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 265 VTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 778999999999999 999999999999999999999999987 47999999999999999999999999999999985
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=302.63 Aligned_cols=295 Identities=13% Similarity=0.149 Sum_probs=234.8
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEE
Q 002264 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIK 610 (945)
Q Consensus 534 ~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~ 610 (945)
...|...|.+++|+|++..+++++....+++.|++||+.+++........+...+.+++|+|+ ++++++++.||.|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 456888999999999998777666422238999999999988765544333348999999998 69999999999999
Q ss_pred EEECCCCe-eEEEeecCCCCCCccEEE------EcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 611 FWDMDNVN-ILTSTDAEGGLPNLPRLR------FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 611 iwd~~~~~-~~~~~~~~~~~~~v~~v~------~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
+||+.+++ .+..+..+. ..|.++. |+|++++|++++.||.|++||+.++......+..+..
T Consensus 94 iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------- 161 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG---------- 161 (357)
T ss_dssp EECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT----------
T ss_pred EEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC----------
Confidence 99999988 777777554 4899995 5789999999999999999999876322222211100
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
.+
T Consensus 162 ------------------------------------------------------------------------------~~ 163 (357)
T 3i2n_A 162 ------------------------------------------------------------------------------EN 163 (357)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 02
Q ss_pred ccceEEEE----EecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEee
Q 002264 764 SSKVVRLL----YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (945)
Q Consensus 764 ~~~v~~l~----~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~ 839 (945)
...+.+++ |+|+++.+++++.||.|++||+... +... ... |...|.+++|
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~--~~~--~~~~v~~~~~ 217 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRW--ETN--IKNGVCSLEF 217 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEE--EEE--CSSCEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceee--ecC--CCCceEEEEc
Confidence 23556666 7889999999999999999986432 1111 122 7789999999
Q ss_pred cC---CCceEEecC-CCeEEEEeccCceEEEEec-----CCCCCeeEEEeecCCCc-eEEEeecCceEEEEecccc----
Q 002264 840 SK---NDSYVMSAT-GGKISLFNMMTFKVMTTFM-----SPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD---- 905 (945)
Q Consensus 840 s~---dg~~la~~s-d~~i~iwd~~~~~~~~~~~-----~h~~~i~~l~~s~~~~~-~lasg~~dg~v~vwd~~~~---- 905 (945)
+| ++.++++++ ||.|++||+.+++....+. +|...|++++|+| +++ +|++|+.||.|++||+.++
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 99 999999998 8999999998876655554 8999999999999 777 8999999999999999854
Q ss_pred ---------------eEEEEecCCCcceeEEEecCCcceee-eecCCceEEEEecC
Q 002264 906 ---------------EVKSKLKGHQKRITGLAFSTSLNILV-SSGADAQVTLCVEH 945 (945)
Q Consensus 906 ---------------~~~~~l~~h~~~V~~l~~s~dg~~l~-s~~~Dg~i~vWdl~ 945 (945)
+++..+.+|...|++++|+|++++|+ |++.||.|+|||+.
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 46778899999999999999999998 89999999999973
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=313.64 Aligned_cols=315 Identities=9% Similarity=0.014 Sum_probs=237.8
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+..+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 346899999999999999999999999 755543 346899999999999998 377777777444
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-----eEEEEEEcCCCCEEEEEeec
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~~ 559 (945)
..+..+ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++.
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~- 149 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE- 149 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-
Confidence 443333 4588899999987 678999999999999999543 444445 443 5999999999999999996
Q ss_pred CCCCceEEEEeCCCCce-------eeEe----ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee---EEEeec
Q 002264 560 KDGDSFLVEWNESEGTI-------KRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI---LTSTDA 625 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~ 625 (945)
||.|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++.. ...+..
T Consensus 150 ---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 150 ---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp ---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred ---CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 99999999998853 5665 45544 89999999998 88999999999999988774 244532
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
.+...|.+++|+ |+.+|+++ +++|++|++.++.......
T Consensus 224 -~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~------------------------------------- 262 (588)
T 2j04_A 224 -ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT------------------------------------- 262 (588)
T ss_dssp -CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------------------------------------
T ss_pred -cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------------------------------------
Confidence 233489999999 68999987 6999999998662111100
Q ss_pred cCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEE--ecCCCeEEEee
Q 002264 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY--TNSAVGLLALG 783 (945)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~dg~~l~~~~ 783 (945)
+|...|..++| +||+..+++++
T Consensus 263 --------------------------------------------------------gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 263 --------------------------------------------------------GSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp --------------------------------------------------------SCCSCCCEEEETTCSSCEEEEECS
T ss_pred --------------------------------------------------------CCCceEEEEEeeeCCCCCEEEEEc
Confidence 15566777777 77777777777
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCce
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK 863 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~ 863 (945)
.+|+ ++|.. + .++++||+..+|++ |+++++|+...+.
T Consensus 287 edG~-klw~~------------------------------------d-----~~~~spd~~l~a~~-d~~v~lW~~~g~~ 323 (588)
T 2j04_A 287 KTSY-KVLLE------------------------------------D-----ELHVTADNIIAPYL-EKKFKKWSTIWNE 323 (588)
T ss_dssp SCEE-EEEES------------------------------------S-----SEEEECCCSSHHHH-HHHHHHTTTTTTS
T ss_pred CCCC-EEEee------------------------------------c-----cEEECCCceEEEEc-CCEEEEEECCCCc
Confidence 7777 77742 1 25577777777665 6777777765443
Q ss_pred EEEEecCCCCCeeEEEeecCCCceEEEee
Q 002264 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 864 ~~~~~~~h~~~i~~l~~s~~~~~~lasg~ 892 (945)
+..+.+ ...|.+++||| ||+++|+++
T Consensus 324 -l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 324 -FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp -SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred -eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 334443 45577777777 777777765
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-32 Score=301.45 Aligned_cols=250 Identities=15% Similarity=0.237 Sum_probs=211.9
Q ss_pred ccccCCCccEEEEEEcCC----CCEEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecC----CCeeEEE
Q 002264 400 SIFKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYP----NKLLCVV 469 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~~~l~ 469 (945)
.+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|.+++|+|+ +. +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999984 4566666677799999999887665433322 26688999999999 55 899
Q ss_pred EEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe---cCCCCeEEEEE
Q 002264 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTML 545 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~ 545 (945)
+|+.||.|++|| .+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++++....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 999999999999 889999999999999999999873 4579999999999999999998888877 67888999999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc----------------------------ccCcceEEEEEcCCC
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG----------------------------FRKKSNGVVQFDTTQ 597 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 597 (945)
|+|++++|++++. ++.|++||+++++....+.. |.. .+.+++|+ +
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~ 241 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--G 241 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--T
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--C
Confidence 9999999999985 89999999998765544432 544 78899998 7
Q ss_pred CEEEEEECCCcEEEEECCCCee--------------EEEeecCCCCCCccEEEEcCC--CCEEEEEECCCcEEEEECCCC
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNI--------------LTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~sp~--g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++++.||.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 7999999999999999987643 55565554 48999999999 999999999999999999876
No 87
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=313.77 Aligned_cols=300 Identities=13% Similarity=0.218 Sum_probs=232.9
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC------------cc
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------IS 408 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 408 (945)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCc
Confidence 45778999999999999 5999999999999999887631100000 000113467887 88
Q ss_pred EEEEEEcCCC--CEEEEEECCCcEEEEEccCCcccc------------------------------------ccee-ecc
Q 002264 409 VSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLR------------------------------------QHSQ-IDA 449 (945)
Q Consensus 409 V~~i~~s~~g--~~las~~~dg~i~vwd~~~~~~~~------------------------------------~~~~-~~~ 449 (945)
|.+++|+|++ .+|++++.|+.|++||+.++.... .... ..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999997643210 0001 357
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C-CCceEE-------EecCCCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
|...|.+++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|+|.+ ..+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCCeE
Confidence 999999999999999 88998 799999999 4 344444 256899999999998742 2799999999999
Q ss_pred EEEEccCCCe----eEEecCCCC------------eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccc
Q 002264 521 KAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGF 583 (945)
Q Consensus 521 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~ 583 (945)
++||++++.. ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998876 567777765 899999999999999886 48999999997 8888888877
Q ss_pred cCcc--------------eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-----------------------
Q 002264 584 RKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----------------------- 626 (945)
Q Consensus 584 ~~~~--------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 626 (945)
.... +..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 5310 223899999999999999999999999998876422110
Q ss_pred -------CCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 627 -------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 627 -------~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.....|..++|+|++++||+++.++ +.+|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1224688999999999999998774 8888653
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.7e-32 Score=288.14 Aligned_cols=250 Identities=14% Similarity=0.200 Sum_probs=206.4
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-- 417 (945)
..+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++
T Consensus 5 ~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~-----------------~~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHK-----------------LIDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBC-----------------CCEEECCCSSCEEEEEECCGGG
T ss_pred ccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcE-----------------EEEEEccccCCeEEEEecCCCc
Confidence 346999999999999999 5999999999999999754211 01347899999999999874
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCCc--eEEEecC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEG 492 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~~--~~~~~~~ 492 (945)
+++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++|| ..+. ....+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 899999999999999999887422 22256789999999999998 77 899999999999999 5442 2466789
Q ss_pred CCCCEEEEEeeecC-----------CccEEEEEEcCCeEEEEEccCCC----eeEEecCCCCeEEEEEEcCCC---CEEE
Q 002264 493 HEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRLF 554 (945)
Q Consensus 493 ~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~ 554 (945)
|...|.+++|+|.. ++++|++|+.|++|++||++... ....+..|...|.+++|+|++ .+|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 99999999998852 25799999999999999998766 445677889999999999985 7888
Q ss_pred EEeecCCCCceEEEEeCCCCc---eeeEe--ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 555 SCGTSKDGDSFLVEWNESEGT---IKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+++. |+.|++||+.+.. ....+ ..+.. .+..++|+|++++|++++.||.|++|+..
T Consensus 224 s~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8885 9999999987743 12223 33433 78999999999999999999999999976
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=311.01 Aligned_cols=242 Identities=14% Similarity=0.106 Sum_probs=200.5
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC--cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+..|.++|++++|+|+|++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3346779999999999999999999999999999987 4444 6778999999999999999 8999999999999
Q ss_pred Ee-CCCc---eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---eEEecC-CCCeEEEEEEcCCCC
Q 002264 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (945)
Q Consensus 480 wd-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~~~~ 551 (945)
|| .+++ ....+.+|...|.+++|+| ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6655 6788889999999999987 568999999999999999998763 556666 888999999999999
Q ss_pred EEEEEeecCCCCceEEEEeCC------------------CCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
+|++++. ++.|++||+. .++.+..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999986 8999999985 34556666 5555 799999999999999999999999999
Q ss_pred CCCCee----EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+.+++. +..+..+. ..|.+++|+|+|++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999877 55666554 489999999999999998766655 66665
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=285.71 Aligned_cols=240 Identities=15% Similarity=0.227 Sum_probs=210.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~ 85 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMING 85 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEE
Confidence 457899999999999 999999999999999999998876555 5678999999999999999 8999999999999
Q ss_pred Ee-CC---CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC-CCCEEE
Q 002264 480 WE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLF 554 (945)
Q Consensus 480 wd-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 554 (945)
|+ .. ++.+..+.+|...|.+++|. +.++++++.||.|++|| .......+..+...+.++.|+| ++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99 33 35678889999999999982 36899999999999999 6667778888899999999988 899999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+++. ++.|++|| .++....+.......+.+++|+|++. +++++.||.|++||+++++.+..+..+.. .|.+
T Consensus 160 ~~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~ 230 (313)
T 3odt_A 160 TASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYC 230 (313)
T ss_dssp EEET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEE
T ss_pred EEEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEE
Confidence 9885 89999999 55677777774455899999999987 99999999999999999999998876654 8999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+|++ .+++++.||.|++||+.++
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999 5889999999999999766
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.2e-32 Score=302.96 Aligned_cols=288 Identities=14% Similarity=0.174 Sum_probs=223.7
Q ss_pred cCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCceee--EeccccCcceEEEEEcC-CCCEEEEEECCCcEE
Q 002264 535 DAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIK 610 (945)
Q Consensus 535 ~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~ 610 (945)
..+...|++++|+| ++++|++++. ||.|++||+.+++... .+.+|.. .|.+++|+| ++++|++++.||+|+
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~----dg~i~lWd~~~~~~~~~~~~~gH~~-~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSK----GGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEET----TSCEEEECSSCCSCCEEECCCSSSC-CCCEEEECSSCTTEEEEECSSSCEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeC----CCEEEEEECCCCCceeEEEccCCCC-CEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34566799999999 5668888875 8999999998776443 4456766 899999998 688999999999999
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
+||++++........+.....+.+++|+|++++|++|+.||.|++||+... . +..
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~-~~~----------------------- 245 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-E-LWN----------------------- 245 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-B-CCC-----------------------
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-e-eEE-----------------------
Confidence 999988766555555555556889999999999999999999999998532 1 100
Q ss_pred ceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEE
Q 002264 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (945)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 770 (945)
+ .+|...|.++
T Consensus 246 ------------------------------------------------------------------~---~~h~~~v~~v 256 (435)
T 4e54_B 246 ------------------------------------------------------------------L---RMHKKKVTHV 256 (435)
T ss_dssp ------------------------------------------------------------------S---BCCSSCEEEE
T ss_pred ------------------------------------------------------------------E---ecccceEEee
Confidence 0 1177789999
Q ss_pred EEecCCC-eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec
Q 002264 771 LYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (945)
Q Consensus 771 ~~s~dg~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~ 849 (945)
+|+|++. .+++++.|+.|++||+..... .........|...|++++|+|||++|+++
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~----------------------~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRG----------------------KASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCS----------------------SSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccc----------------------cceEEEeeeccccccceeECCCCCeeEEE
Confidence 9999887 566778899999998643221 00001111288999999999999999999
Q ss_pred C-CCeEEEEeccCceEEEEecCCCCC------eeEEEeecCCCceEEEee------------cCceEEEEecccceEEEE
Q 002264 850 T-GGKISLFNMMTFKVMTTFMSPPPA------STFLAFHPQDNNIIAIGT------------EDSTIHIYNVRVDEVKSK 910 (945)
Q Consensus 850 s-d~~i~iwd~~~~~~~~~~~~h~~~------i~~l~~s~~~~~~lasg~------------~dg~v~vwd~~~~~~~~~ 910 (945)
+ |++|+|||+.+++....+..|... +....|+| ++.++++++ .++.|++||..+|+++..
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 9 899999999999888877766532 34456666 555555543 346799999999999888
Q ss_pred ec-CCCcceeEE-EecCCcceeeeecCCceEEEEecC
Q 002264 911 LK-GHQKRITGL-AFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 911 l~-~h~~~V~~l-~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+. +|...|.++ +|+|+|++|++|+ |++|+|||+.
T Consensus 394 l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 394 LYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred EeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 64 688899988 6999999999876 7899999973
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-31 Score=301.34 Aligned_cols=273 Identities=19% Similarity=0.292 Sum_probs=235.9
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
+|...|+|++| +|+ +|++|+.||+|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999887 677 59999999999999999887653 37789999999999 78999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE---EEecCCCCCE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~---~~~~~~~~~v 497 (945)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++|| .++... ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987665 6778999999999974 4 799999999999999 666544 6788999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.++++ ++.++++|+.||.|++||+++++....+..+...|.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 3479999999999999999999999999999999999998 4678998885 899999999999999
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------eEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
..+.+|.. .+.++++ ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEe
Confidence 99998876 7888888 68899999999999999997665 677776554 48999999 788999999
Q ss_pred CCCcEEEEECCCCc
Q 002264 649 ADNGFKILANAIGL 662 (945)
Q Consensus 649 ~dg~i~iw~~~~~~ 662 (945)
.||.|++||+.+..
T Consensus 403 ~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 403 HDDTILIWDFLNDP 416 (435)
T ss_dssp SSSEEEEEC-----
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998763
No 93
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.3e-31 Score=328.03 Aligned_cols=433 Identities=14% Similarity=0.105 Sum_probs=319.6
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+.+.+.+.+|||+ . ||..+ ++.|.+|++.+++.. .+.+|...+.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~-~~~l~~~~~~gg~~~--------------------~lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVC-CDDLWEHDLKSGSTR--------------------KIVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEE-TTEEEEEETTTCCEE--------------------EEECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEE-CCcEEEEECCCCcEE--------------------EeeeCCCcccCeEECCCCCEEE
Confidence 4568999999964 4 55555 378999999877543 2667999999999999999999
Q ss_pred EEECC------CcEEEEEccCCcccccceeeccccccE-------EEEEEecCCCeeEEEEEeCC------CcEEEEeCC
Q 002264 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (945)
Q Consensus 423 s~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~~~~~~~l~s~s~d------~~i~vwd~~ 483 (945)
+++.+ ..|++|++.+++. + .+..|...+ .+++|+|||+ ++++++.+ ..|.+|+..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988753 2 567788888 9999999998 77777754 357778854
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEc------------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
+.....+..+. ...++|+| | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44445555443 34566765 5 7777753 345667754444555566788889999999988 4
Q ss_pred EEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC---
Q 002264 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 627 (945)
.++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|+.++++. ++.|++|++..... ..+..+.
T Consensus 216 l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLES 287 (1045)
T ss_dssp EEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCB
T ss_pred EEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccc
Confidence 444443 256667776542 33444455444 345679999999888874 89999999955443 3443321
Q ss_pred ------CCCCccEEEEc-CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 628 ------~~~~v~~v~~s-p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
+...+.+++|+ |||+.+++++ ++.|.+|+..++.. .. +
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~-~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK-V-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE-C--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE-c--------------------------------
Confidence 12258899999 9999999887 77899988765410 00 0
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCcc-ceEEEEEecCCCeE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGL 779 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l 779 (945)
.. +.. .+..++|+ ||+.+
T Consensus 333 ---------------------------------------------------------~~---~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 333 ---------------------------------------------------------PE---PLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp ---------------------------------------------------------SC---CSCEEEEEECSS-SEEEE
T ss_pred ---------------------------------------------------------cC---CCcceEEeeeEc-CCCeE
Confidence 00 333 56788888 88888
Q ss_pred EEeeecCeEE-EEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEE
Q 002264 780 LALGSNGVQK-LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (945)
Q Consensus 780 ~~~~~dg~i~-lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iw 857 (945)
++++.++.+. +|++. ++.... +.+ |...+.+++|||||++||+++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8888776666 66542 222211 223 677899999999999999988 7899999
Q ss_pred eccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCc----------eEEEEecccceEEEEecCCCcceeEEEecCCc
Q 002264 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----------TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (945)
Q Consensus 858 d~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 927 (945)
|+.+++....+.+|.+.+.+++||| ||++||+++.++ .|++||+.+++ +..+..|...+.+++|+|||
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 9999998888878999999999999 899998887654 89999999987 77888899999999999999
Q ss_pred ceeeeecCCceEEEEec
Q 002264 928 NILVSSGADAQVTLCVE 944 (945)
Q Consensus 928 ~~l~s~~~Dg~i~vWdl 944 (945)
++|++++.++...+|+.
T Consensus 484 ~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CEEEEEESCCCCCEECS
T ss_pred CEEEEEecccCCcCcch
Confidence 99999998888888864
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-31 Score=294.84 Aligned_cols=280 Identities=15% Similarity=0.217 Sum_probs=227.2
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
.++.++|+++ +.|+++. |+.|++||..+++....+..+. ...|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgl-----d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCC-CEEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 4567899976 4666654 8899999999999888776432 2369999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
.+..+..|.. .+.++++ ++.++++|+.|+.+++|+..........
T Consensus 181 ~~~~~~~h~~--~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~------------------------------- 225 (420)
T 4gga_A 181 RLRNMTSHSA--RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT------------------------------- 225 (420)
T ss_dssp EEEEECCCSS--CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------------------------------
T ss_pred EEEEEeCCCC--ceEEEee--CCCEEEEEeCCCceeEeeecccceeeEE-------------------------------
Confidence 9998876644 6777666 5789999999999999998654211111
Q ss_pred CCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
+. +|...+..+.++|+|+.
T Consensus 226 ----------------------------------------------------------~~---~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 226 ----------------------------------------------------------LS---GHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp ----------------------------------------------------------EE---CCSSCEEEEEECTTSSE
T ss_pred ----------------------------------------------------------ec---ccccceeeeeecCCCCe
Confidence 11 17778899999999999
Q ss_pred EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc-eEEe--cC-CCeE
Q 002264 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMS--AT-GGKI 854 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~-~la~--~s-d~~i 854 (945)
+++++.||.+++|+........ ........ |...|.+++|+|++. ++++ |+ |++|
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~-------------------~~~~~~~~--~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGW-------------------VPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCS-------------------CCSEEECC--CSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred eeeeeccccceEEeeccccccc-------------------eeeeeecc--cCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 9999999999999865432110 00011222 788999999999765 4444 34 7899
Q ss_pred EEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee--cCceEEEEecccceEEEEecCCCcceeEEEecCCcceeee
Q 002264 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 855 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 932 (945)
++||+.++++...+..| ..+.++.|++ +++.+++++ .||.|+|||+.+++++..+.+|.+.|++|+|+|||++|+|
T Consensus 304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEeCCccccceeeccc-cceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999999999988854 5689999999 777776654 7999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEec
Q 002264 933 SGADAQVTLCVE 944 (945)
Q Consensus 933 ~~~Dg~i~vWdl 944 (945)
||.|++|+|||+
T Consensus 382 ~s~D~tvriWdv 393 (420)
T 4gga_A 382 AAADETLRLWRC 393 (420)
T ss_dssp EETTTEEEEECC
T ss_pred EecCCeEEEEEC
Confidence 999999999997
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-31 Score=290.83 Aligned_cols=279 Identities=10% Similarity=0.113 Sum_probs=235.8
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC-E
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-~ 420 (945)
+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5899999999999999 58999999999999998776211 0012447999999999999999 9
Q ss_pred EEEEECCCcEEEEEc-cCCcccccceeecc--ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC---------CceE
Q 002264 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (945)
Q Consensus 421 las~~~dg~i~vwd~-~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~---------~~~~ 487 (945)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87654 25778 999999999999 87 899999999999999 65 6656
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCe--eEEecCCCCeEEEEEEcC-CCCEEEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~ 563 (945)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 6666 889999999975 33 99999999999999988 443 334455677899999999 9999999985 8
Q ss_pred ceEEEEeCCCC------ceeeEeccccC--------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 564 ~~i~iwd~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
+.+++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+. .
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-E 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-S
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-C
Confidence 99999999887 77777877643 268999999999999999999999999999999998887651 3
Q ss_pred CCccEEEEcCCCCEEEEEECCCc-EEEE
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~-i~iw 656 (945)
..|.+++ |++++|++++.||. .+.+
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEec--CCCCeEEEEecCCcccccc
Confidence 4899999 99999999999998 4443
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.6e-32 Score=301.59 Aligned_cols=295 Identities=13% Similarity=0.159 Sum_probs=240.1
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~las~ 424 (945)
...+++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4557899999876667788999999999865433210 1134778999999999999 99999999
Q ss_pred ECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe--cCCCCCE
Q 002264 425 FTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPV 497 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~--~~~~~~v 497 (945)
+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 223367899999999999999843 899999999999999 888888898 8899999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCe-EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.+++|+| ++.+|++++.||.|++||+++++....+ ..+... +.++.|+|++++++++.. ...++.|++||+++++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999987 6689999999999999999998888877 566654 899999999998888721 1238999999999876
Q ss_pred e-eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee-EEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 576 I-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 576 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
. ...........+..++|+|+++.+++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 3333323333688999999999997655 799999999998874 555555445568999999999998875 4679
Q ss_pred EEEEECCCC
Q 002264 653 FKILANAIG 661 (945)
Q Consensus 653 i~iw~~~~~ 661 (945)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999875
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-30 Score=278.41 Aligned_cols=279 Identities=15% Similarity=0.194 Sum_probs=223.7
Q ss_pred EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 541 i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
.+.++||+++ .|+++. |+.|++||+.+++.++.+..+. ...|.+++|+|+++++++|+.||.|++||+++++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4678999886 565553 8899999999999988876432 23699999999999999999999999999999999
Q ss_pred EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCC
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~ 699 (945)
+..+..|.. .+ .++++++..+++++.++.+++|+..........+
T Consensus 102 ~~~~~~h~~--~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------------------------------- 146 (318)
T 4ggc_A 102 LRNMTSHSA--RV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------------------- 146 (318)
T ss_dssp EEEEECCSS--CE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------------------------------
T ss_pred EEEecCccc--eE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEE-------------------------------
Confidence 998887643 44 4556677899999999999999886552211111
Q ss_pred CccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeE
Q 002264 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (945)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 779 (945)
. +|...+..++++++++.+
T Consensus 147 ----------------------------------------------------------~---~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 147 ----------------------------------------------------------S---GHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp ----------------------------------------------------------E---CCSSCEEEEEECTTSSEE
T ss_pred ----------------------------------------------------------c---CccCceEEEEEcCCCCEE
Confidence 1 166788899999999999
Q ss_pred EEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceE---EecC-CCeEE
Q 002264 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV---MSAT-GGKIS 855 (945)
Q Consensus 780 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~l---a~~s-d~~i~ 855 (945)
++++.||.|++||+....... ........ +...|.+++++|++..+ ++++ +++|+
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~-------------------~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGW-------------------VPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBS-------------------CCSEEECC--CCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEEecCcceeEEECCCCcccc-------------------cceeeecc--cCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 999999999999875432100 00011122 67889999999987644 3455 68899
Q ss_pred EEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe--ecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeee
Q 002264 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG--TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 856 iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg--~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
+||........... +...+.++.|+| ++..++++ +.|+.|+|||+.+++++..+.+|.+.|++|+|+|||++|+|+
T Consensus 225 lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 225 IWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99999888766654 677899999999 66666554 489999999999999999999999999999999999999999
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
|.||+|+|||+
T Consensus 303 s~D~~v~iWd~ 313 (318)
T 4ggc_A 303 AADETLRLWRC 313 (318)
T ss_dssp ETTTEEEEECC
T ss_pred ecCCeEEEEEC
Confidence 99999999997
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-32 Score=290.75 Aligned_cols=250 Identities=17% Similarity=0.293 Sum_probs=204.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i 477 (945)
.++.+|.+.|++++|+|+|++||+|+.|++|++||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v 83 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKV 83 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEE
Confidence 347789999999999999999999999999999999886431 22367899999999999863 77 89999999999
Q ss_pred EEEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---eEEecCCCCeEEEEEEcCC--
Q 002264 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD-- 549 (945)
Q Consensus 478 ~vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~-- 549 (945)
++|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 9999 655 4667888999999999999875578999999999999999987543 2344567778999999997
Q ss_pred ---------------CCEEEEEeecCCCCceEEEEeCCCC---ceeeEeccccCcceEEEEEcCCC----CEEEEEECCC
Q 002264 550 ---------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDS 607 (945)
Q Consensus 550 ---------------~~~l~~~~~~~d~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg 607 (945)
+++|++++. |+.|++||+... +....+.+|.. .+.+++|+|++ ..|++++.||
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp C------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTC
T ss_pred CccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCC
Confidence 468888875 899999999755 46677888876 89999999986 8899999999
Q ss_pred cEEEEECCCC---e-eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 608 QIKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 608 ~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.|++|++.+. . ....+..+ ...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999998762 1 12223333 3489999999999999999999999999975
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.2e-31 Score=290.12 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=236.1
Q ss_pred CcceEEeec-CCCcEEEEEEeCC---CCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCcc
Q 002264 334 PRTVAVSLH-QGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (945)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~fsp~---g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (945)
+......+. |.+.|+|++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCC
Confidence 344555554 9999999999999 56 699999999999999987 33321 236779999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEE--ecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~--s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
|.+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++|| .+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999886553 5579999999999 88888 899999999999999 8888
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CCCeEEEEEEcCCCCE----EEEEeec
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSR----LFSCGTS 559 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~----l~~~~~~ 559 (945)
.+..+..+. .+.++.+.+ ..+++++.++.+++|+++.......... ....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 888888665 566666542 4788999999999999987665543322 3345666666665554 788775
Q ss_pred CCCCceEEEEeCCCC---ceeeEeccccCc-----------ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 560 KDGDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++++..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999999987 556677776542 589999999999999999999999999999999988876
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 314 ~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 LD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 54 48999999999999999999875554443
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.4e-32 Score=289.51 Aligned_cols=249 Identities=15% Similarity=0.217 Sum_probs=202.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g 418 (945)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|++ ++
T Consensus 10 ~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCC
Confidence 36999999999999999 59999999999999998764321 133778999999999986 48
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCCce---EEEecC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEG 492 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~~~---~~~~~~ 492 (945)
++|++|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999886422 22357789999999999998 66 899999999999999 54422 345678
Q ss_pred CCCCEEEEEeeecC---------------CccEEEEEEcCCeEEEEEccCCC---eeEEecCCCCeEEEEEEcCCC----
Q 002264 493 HEAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADG---- 550 (945)
Q Consensus 493 ~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~---- 550 (945)
|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 99999999998752 14689999999999999997552 445677888899999999987
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
.+|++++. |+.|++||+.+.. ....+..|.. .+.+++|+|++++|++++.||.|++|+..
T Consensus 229 ~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999885 9999999987631 2233445544 79999999999999999999999999975
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-31 Score=292.78 Aligned_cols=239 Identities=17% Similarity=0.200 Sum_probs=205.1
Q ss_pred CCCcc--EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 404 DVPIS--VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 404 ~h~~~--V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+|... +.+++|++ ..+++++.|+.|++||+.+++.... +. .|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSAL---AETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEE---EECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEe---eecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 45444 45566664 5688888999999999999876552 33 3889999999999999 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
| .+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..+...|.+++|+|++++|++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 9 8889999999999999999983 36899999999999999984 5556678889999999999999999999985
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++.|++||+++++....+..|.. .+.+++|+|++. .+++++ .||.|++||+.+++.+..+..+ ..|.++
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~ 309 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSL 309 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEE
T ss_pred ----CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEE
Confidence 89999999999999999888876 799999999775 555554 6999999999999999888643 379999
Q ss_pred EEcCCCCEEEEEE--CCCcEEEEECCCC
Q 002264 636 RFSKEGNLLAVTT--ADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~g~~l~~~~--~dg~i~iw~~~~~ 661 (945)
+|+|+++.+++++ .||.|++|++.++
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 9999999999954 8999999998654
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.5e-31 Score=296.70 Aligned_cols=249 Identities=12% Similarity=0.180 Sum_probs=204.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc--------cccceeecccc------------ccEEEEEEecCC
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHV------------GAVNDLAFAYPN 463 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~--------~~~~~~~~~h~------------~~v~~l~~s~~~ 463 (945)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++. ......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999987752 11233677898 889999999998
Q ss_pred --CeeEEEEEeCCCcEEEEe-CCCceE---------------------------------------EE-ecCCCCCEEEE
Q 002264 464 --KLLCVVTCGDDKLIKVWE-LSGRKL---------------------------------------FN-FEGHEAPVYSI 500 (945)
Q Consensus 464 --~~~~l~s~s~d~~i~vwd-~~~~~~---------------------------------------~~-~~~~~~~v~~~ 500 (945)
. .|++++.|++|++|| ..+... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 6 899999999999999 443321 12 36899999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--------ecCCCCeEEEEEEcCCC-CEEEEEeecCCCCceEEEEeC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--------YDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~ 571 (945)
+|+| ++.+|++| .|+.|++||++....... +..+...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9987 56899998 899999999985443332 45677899999999998 89999885 899999999
Q ss_pred CCCce----eeEeccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCC----
Q 002264 572 SEGTI----KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPN---- 631 (945)
Q Consensus 572 ~~~~~----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 631 (945)
++++. ...+..+.. ..+.+++|+|++++|++++. |.|++||+++ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 677877764 27999999999999999999 9999999997 888877776642111
Q ss_pred ---------ccEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 632 ---------LPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 632 ---------v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+..++|+|++++|++++.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 2349999999999999999999999998873
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-31 Score=288.69 Aligned_cols=298 Identities=9% Similarity=0.115 Sum_probs=218.2
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-- 416 (945)
...+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPE 69 (351)
T ss_dssp EECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGG
T ss_pred cCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCC
Confidence 3456999999999999999 599999999999999987643211 1134678999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCccc------ccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCCceE
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKL 487 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~------~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~~~~ 487 (945)
++++|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .+++.+
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHh
Confidence 6999999999999999999886421 233467789999999999999 88 899999999999999 666543
Q ss_pred EEec-------------CCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCCe--eEEecCCCCeEEEEEEcCCC-
Q 002264 488 FNFE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG- 550 (945)
Q Consensus 488 ~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~- 550 (945)
..+. .|...+.+++|+|. .++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG 227 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence 3222 67888999999885 1257999999999998888776665 45666788899999999998
Q ss_pred ---CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE----ECCCcEEEEECCCCeeEEEe
Q 002264 551 ---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV----GEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 551 ---~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~ 623 (945)
++|++++. |+.|++||++++........... ........+....+..+ .....+.+|+....+.+..+
T Consensus 228 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 228 RWYQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CSSEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEE
T ss_pred CcceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 78888885 89999999987655444333222 22223333333333333 34455666666666777777
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..|. ..|.+++|+|++++|++++.||.|++|++.++
T Consensus 303 ~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 303 DDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 6554 48999999999999999999999999999876
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2e-30 Score=286.06 Aligned_cols=252 Identities=15% Similarity=0.203 Sum_probs=209.5
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--C
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--g 418 (945)
-+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|...|.+++|+++ +
T Consensus 8 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp EECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCGGGC
T ss_pred cCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCCCCCC
Confidence 35999999999999999 59999999999999997432211 1347789999999999987 9
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCC--ceEEEecCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~--~~~~~~~~~ 493 (945)
++|++|+.||.|++||+.+++.. ....+..|...|.+++|+|+ +. ++++++.|+.|++|| ..+ .....+.+|
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred CEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 99999999999999999987521 22257789999999999999 88 899999999999999 554 345677889
Q ss_pred CCCEEEEEeeecC-----------CccEEEEEEcCCeEEEEEccCCCee----EEecCCCCeEEEEEEcCC---CCEEEE
Q 002264 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD---GSRLFS 555 (945)
Q Consensus 494 ~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~---~~~l~~ 555 (945)
...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +++|++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999998842 4689999999999999999876533 456678889999999999 889999
Q ss_pred EeecCCCCceEEEEeCCCCc---eeeEe--ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 556 CGTSKDGDSFLVEWNESEGT---IKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++. ++.|++||+.++. ....+ ..+.. .+.+++|+|++++|++++.||.|++|++..+.
T Consensus 227 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 227 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 885 8999999998864 12222 22433 78999999999999999999999999998544
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.7e-30 Score=276.61 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=209.9
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+|.+.|++++|+|++++|++|+.||.|++|++.++........+.+|...|.+++|+|+++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5579999999999999999999999999999999987632222345689999999999999873 478899999999999
Q ss_pred C-CCceEEEecC--CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC---------CCeeEEecCCCCeEEEEEEcCC
Q 002264 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 482 ~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
. .......+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878889999 999999999987 47999999999999999987 55555554 6778999999998
Q ss_pred CCEEEEEeecCCCCceEEEEeCCC-Cce--eeEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCC------ee
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NI 619 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~ 619 (945)
+ +++++. ++.|++||+++ +.. ......+. ..+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 162 ~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEEEeC----CCeEEEEECCccccccceeeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 8 777764 88999999988 543 22333333 3799999999 9999999999999999999887 77
Q ss_pred EEEeecCCC-------CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 620 LTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 620 ~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 777776532 348999999999999999999999999999876
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-30 Score=282.51 Aligned_cols=254 Identities=19% Similarity=0.296 Sum_probs=216.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i 477 (945)
.++.+|.+.|++++|+|++++||+|+.||.|++||+..+.. .....+.+|...|++++|+++ +. +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v 81 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKV 81 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEE
Confidence 34788999999999999999999999999999999984321 223367889999999999987 77 89999999999
Q ss_pred EEEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcC----
Q 002264 478 KVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA---- 548 (945)
Q Consensus 478 ~vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~---- 548 (945)
++|| .+++ .+..+..|...|.+++|+|..++.++++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 9999 6776 77888899999999999886436899999999999999998874 3445667888999999999
Q ss_pred ---------CCCEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEEEE
Q 002264 549 ---------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFW 612 (945)
Q Consensus 549 ---------~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw 612 (945)
++..+++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++|
T Consensus 162 ~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp --------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999885 8999999998764 4456677766 7999999999 8999999999999999
Q ss_pred ECCCCe---eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 613 DMDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 613 d~~~~~---~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+.++. .........+...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 999874 3344444445568999999999999999999999999999754
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=275.42 Aligned_cols=209 Identities=16% Similarity=0.221 Sum_probs=178.4
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
.+.+|.+.|++++|+|+++ +|++|+.||.|++|| .++ +.+..+.+|...|.+++|++..++.+|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR--HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCC--EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4678999999999999999 899999999999999 554 466778899999999999886456899999999999
Q ss_pred EEEEccCC---------CeeEEecCCCCeEEEEEEcCC--CCEEEEEeecCCCCceEEEEeCCCCceeeEec--------
Q 002264 521 KAWLYDTM---------GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-------- 581 (945)
Q Consensus 521 ~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-------- 581 (945)
++||++.+ .....+..+...|.+++|+|+ +.++++++. ++.|++||+++++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN----DGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC----CCcEEEecCCChHHhcccccccccccc
Confidence 99999886 345677788889999999999 999999985 8999999999887654433
Q ss_pred -----cccCcceEEEEEcCC---CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC----CEEEEEEC
Q 002264 582 -----GFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG----NLLAVTTA 649 (945)
Q Consensus 582 -----~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g----~~l~~~~~ 649 (945)
.+. ..+.+++|+|+ +..+++++.++.+.+|+...+..........+...|.+++|+|++ ++|++++.
T Consensus 160 ~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 160 SIPPANHL-QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SCCCSSCS-CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred ccccCCcc-cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 233 36889999997 899999999999988988888764444444556689999999998 89999999
Q ss_pred CCcEEEEECCCC
Q 002264 650 DNGFKILANAIG 661 (945)
Q Consensus 650 dg~i~iw~~~~~ 661 (945)
||.|++||+.++
T Consensus 239 dg~i~iwd~~~~ 250 (351)
T 3f3f_A 239 DGRIRIFKITEK 250 (351)
T ss_dssp TSCEEEEEEEEC
T ss_pred CCeEEEEeCCCC
Confidence 999999999755
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.8e-29 Score=283.67 Aligned_cols=233 Identities=16% Similarity=0.290 Sum_probs=207.5
Q ss_pred cCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 79999999999999999999987665 67899999999999 677 899999999999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
.+++.+..+.+|...|.+++|++ ..+++|+.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 88999999999999999999852 58999999999999999887765 566778889999998 7889999885
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.|++||+.+++.+..+.+|.. .+.++.++ ++.+++|+.||.|++||+++++.+..+..+. ..|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-
Confidence 89999999999999999998876 78888884 6899999999999999999999999887654 48999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998654
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=280.18 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=220.8
Q ss_pred ccccCCCccEEEEEEcCC---CCEEEEEECCCcEEEEEccC-CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 400 SIFKDVPISVSRVAWSPD---GNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~---g~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg 108 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDK 108 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTS
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCC
Confidence 347889999999999999 69999999999999999987 44331 25778999999999999999 899999999
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.|++|| .+++.+ .+.+|...|.+++|.+.+++.+|++++.||.|++||+++++....+..+. .+.++.+.+ ..++
T Consensus 109 ~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~ 184 (368)
T 3mmy_A 109 TAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAV 184 (368)
T ss_dssp EEEEEETTTTEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEE
T ss_pred cEEEEEcCCCCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeE
Confidence 999999 555544 46779999999999777788999999999999999999988888877665 455666554 4666
Q ss_pred EEeecCCCCceEEEEeCCCCceee-EeccccCcceEEEEEcCCCCE----EEEEECCCcEEEEECCCC---eeEEEeecC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNH----FLAVGEDSQIKFWDMDNV---NILTSTDAE 626 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~ 626 (945)
+++. ++.+.+|++....... ...........++++.++... +++++.||.|++|+++.. ..+..+..+
T Consensus 185 ~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 185 VATA----ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp EEEG----GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred EEeC----CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 6664 8899999998765433 233223334566666655544 999999999999999987 455556554
Q ss_pred CCC----------CCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceec
Q 002264 627 GGL----------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 627 ~~~----------~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
... ..|.+++|+|++++|++++.||.|++||+.++ ..+..+.++ ..++.+++|+|+|+++++
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-----~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQL-----DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCC-----SSCEEEEEECTTSSCEEE
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCC-----CCCceEEEECCCCCeEEE
Confidence 321 15999999999999999999999999999987 555555544 346899999999988853
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1e-29 Score=282.63 Aligned_cols=275 Identities=14% Similarity=0.157 Sum_probs=225.4
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CC
Q 002264 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 408 ~V~~i~~s~~g~~la-s~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
....++++|+...++ +++.||.|+||++..... ......+.+|.+.|.+++|+| ++. +|++|+.||+|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688998876544 578899999999965432 233446779999999999999 888 899999999999999 66
Q ss_pred C-------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe--cCCCCeEEEEEEcCCCCEEE
Q 002264 484 G-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 484 ~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~ 554 (945)
+ +.+..+.+|...|.+++|+|.+ ..+|++++.||.|++||+++++....+ ..+...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5 5678899999999999998853 269999999999999999999888888 77888999999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEe-ccccCcceEEEEEcCCCCEEEEE---ECCCcEEEEECCCCee-EEEeecCCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGGL 629 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (945)
+++. ++.|++||+++++.+..+ .+|....+..+.|+|++.++++| +.|+.|++||++++.. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9985 899999999999999888 67776558889999999999998 6899999999998764 333332 233
Q ss_pred CCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 630 PNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
..+.+++|+|+++++++++ .||.|++|++.++...+..+..+. +..++.+++|+|++..++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCG
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccce
Confidence 4799999999999997554 699999999998754344443322 345789999999987663
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-29 Score=280.52 Aligned_cols=298 Identities=12% Similarity=0.060 Sum_probs=231.1
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC---ccccccccccccccc----------------------------
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 393 (945)
.++.|++|+|+|+ +|++++ ++.|++||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~~-~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAII-KNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEEE-TTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEEe-CCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 3789999999999 466654 7899999999988 332 1211000
Q ss_pred ------------CcccccccccCCCccEEEEEEcCCCCEE-EEEECCCcEEEEEcc--CCcccccceeeccccccEEEEE
Q 002264 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (945)
Q Consensus 394 ------------~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~ 458 (945)
..........+|.+.|.+++|+|+|++| ++|+.||.|++||+. +++.+..+. ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000011123677789999999999996 889999999999999 776665321 125778999999
Q ss_pred EecCCCeeEEEEEeCCCcEEEEe-CCCceE----EEecCCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCCeeE
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~----~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (945)
|+|+++ +|++|+.|+.|++|+ .++... ..+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 665543 377889999999999985 126899999999999999999888777
Q ss_pred E-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc------------------------Ccc
Q 002264 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------------------KKS 587 (945)
Q Consensus 533 ~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------------------------~~~ 587 (945)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999985 8999999999999888776321 235
Q ss_pred eEEEEEcCCCCEEEEEE-CCCcEEEEEC--CCC---eeEEEeecCCCCCCccEEEEcCCCCEEEEEEC------CCcEEE
Q 002264 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~------dg~i~i 655 (945)
+..++|+|+++++++++ .|+.|++|++ .++ ..+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999999 8999999999 555 666666655 37999999996544443332 455888
Q ss_pred EECCC
Q 002264 656 LANAI 660 (945)
Q Consensus 656 w~~~~ 660 (945)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.2e-28 Score=248.88 Aligned_cols=294 Identities=14% Similarity=0.129 Sum_probs=207.2
Q ss_pred cEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCC---ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 453 AVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 453 ~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+.++-|-. ..+.+.+++++ ...|++|+ .++ ++++++..|..+|..+.+.|+.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 355666644 34445677777 67899999 888 7899999999999999998864332222211
Q ss_pred CCeeEEecCCCCeEEEEEEcCC----CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSAD----GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.++
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss 151 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSS 151 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEec
Confidence 123457899999999 888888763 36666432 33333332
Q ss_pred E--CCCcEEEEEC-CCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 604 G--EDSQIKFWDM-DNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 604 ~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
+ .|+.|++|++ .+++.+..+..+.. .+..++|+| ++..|++++.|++|+|||+.++ +.++++.++..
T Consensus 152 ~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~---- 224 (356)
T 2w18_A 152 GTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS---- 224 (356)
T ss_dssp SSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-----
T ss_pred ccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc----
Confidence 2 4888888888 44777777777665 788999999 7899999999999999999988 44444332110
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
+...+.+++|+|+|+.+++++.+..
T Consensus 225 -----~v~~v~~vafSpdG~~lvs~s~~~~-------------------------------------------------- 249 (356)
T 2w18_A 225 -----YQASVCHKAYSEMGLLFIVLSHPCA-------------------------------------------------- 249 (356)
T ss_dssp -------CCCEEEEEEETTEEEEEEC------------------------------------------------------
T ss_pred -----ceeeeEEEEECCCCCEEEEeccCCC--------------------------------------------------
Confidence 2235678889999987777654311
Q ss_pred eecCCCceEEecC-CCeEEEEeccCceEEEEe-----cCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe
Q 002264 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 838 ~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
...+++|+ |++|++||..+++.+.++ .+|...+.+..+ ++.++|+|+.||+|+|||+.+|+++.++
T Consensus 250 -----~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 250 -----KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp -------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred -----cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 11467888 788999999999887765 467666544443 3679999999999999999999999999
Q ss_pred cCCCccee-EEEecCCcceeeeecCCceEEEEecC
Q 002264 912 KGHQKRIT-GLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 912 ~~h~~~V~-~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.+|...+. .++|+|||++|+||+.|++|+|||+.
T Consensus 322 ~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 322 PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 99988766 58999999999999999999999973
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=8.8e-28 Score=266.14 Aligned_cols=274 Identities=9% Similarity=0.047 Sum_probs=221.5
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE-EEEECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~ 436 (945)
+++++++.|+.|++||+.+++.+. .+.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-------------------EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE-------------------EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 578999999999999999887653 24445 458999999999987 566689999999999
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE-EEE
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 514 (945)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 987665 344343 8999999999994 345666789999999 777777777654 5689999977 45655 788
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEc
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 594 (945)
+.++.|++||+.+++....+..+. .+.+++|+|+++.+++++. .++.|++||+.+++....+..+. .+..++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 889999999999888777766554 5689999999998865543 37899999999998887776432 57889999
Q ss_pred CCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE-EEEECCCcEEEEECCCCcccccccc
Q 002264 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.++ +....+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 9999999988 68999999999999988887643 57899999999987 56678999999999987 4444443
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-30 Score=305.12 Aligned_cols=252 Identities=15% Similarity=0.196 Sum_probs=209.9
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--C
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--g 418 (945)
.+|.+.|++++|+|+|++ |++|+.||+|+|||+.++.... ...+.+|.+.|.+++|+|+ +
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSC
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCC
Confidence 459999999999999995 9999999999999987433211 1347789999999999998 9
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCC--ceEEEecCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~--~~~~~~~~~ 493 (945)
++|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ +. ++++|+.||.|++|| ..+ .....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 9999999999999999998752 122367789999999999999 88 899999999999999 544 345667889
Q ss_pred CCCEEEEEeeecC-----------CccEEEEEEcCCeEEEEEccCCC----eeEEecCCCCeEEEEEEcCC---CCEEEE
Q 002264 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD---GSRLFS 555 (945)
Q Consensus 494 ~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~ 555 (945)
...|.+++|+|.. ++.++++|+.||.|++||++++. ....+..|...|.+++|+|+ ++++++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 9999999998841 46799999999999999998874 34466778889999999999 899999
Q ss_pred EeecCCCCceEEEEeCCCCc-----eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 556 CGTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++. ++.|++||+.++. .......+.. .+.+++|+|+++++++++.||.|++|++.++.
T Consensus 225 ~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Eec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 886 8999999998864 2222233444 78899999999999999999999999998643
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=302.11 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=213.6
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~ 478 (945)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.. .....+.+|.++|++++|+|+ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999985322 233367899999999999988 77 899999999999
Q ss_pred EEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcC-----
Q 002264 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (945)
Q Consensus 479 vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 548 (945)
+|| .+++ .+..+.+|...|.+++|+|..++..+++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888899999999999986436899999999999999998773 3456677888999999999
Q ss_pred --------CCCEEEEEeecCCCCceEEEEeCCCC----ceeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEEEEE
Q 002264 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 549 --------~~~~l~~~~~~~d~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (945)
++..+++++. ++.|++||++++ .....+.+|.. .+.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999885 899999999877 55667777776 8999999999 89999999999999999
Q ss_pred CCCCeeE---EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 22223334568999999999999999999999999999865
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.1e-27 Score=267.07 Aligned_cols=371 Identities=13% Similarity=0.157 Sum_probs=272.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE---EcCCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA---WSPDGN 419 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~---~s~~g~ 419 (945)
....|..+.|+|....++..+.......++... ....+..++ |+|++.
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 445788999999765434433222222332211 223455666 666666
Q ss_pred EEEEE--------------ECCCcEEEEEcc--CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 420 YVGVA--------------FTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 420 ~las~--------------~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
.++.. +.++.+.+|.++ ++. ......+..+ ..+.+++|+|++. ++++++.|+.|++|| .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 55443 233333455443 332 2222234333 4466999999665 788888899999999 7
Q ss_pred CCceEE-----EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
+++.+. .+.+|...|.+++|++ ++.++++++.|+.|++||+++++....+..+...+.+++|+|+++.+++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 788776 4557888999999965 568999999999999999999888888888888999999999999987665
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--------CCCcEEEEECCCCeeEEEeecCCCC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--------EDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
. .++.|++||+.+++.+..+..+. .+..++|+|+++.+++++ .||.|++||+.+++.+..+....
T Consensus 231 ~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-- 303 (433)
T 3bws_A 231 W---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-- 303 (433)
T ss_dssp T---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--
T ss_pred c---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--
Confidence 3 37899999999999888877643 488899999999999988 48899999999998877764332
Q ss_pred CCccEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC
Q 002264 630 PNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (945)
.+.+++|+|+++.+ ++++.|+.|++||+.++. ....+
T Consensus 304 -~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-~~~~~---------------------------------------- 341 (433)
T 3bws_A 304 -NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-VQKSI---------------------------------------- 341 (433)
T ss_dssp -CEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-EEEEE----------------------------------------
T ss_pred -CcceEEECCCCCEEEEEecCCCEEEEEECCCCc-EEEEe----------------------------------------
Confidence 67899999999755 566889999999997652 11100
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i 788 (945)
. +...+.+++|+|+|+.+++++.+..
T Consensus 342 -----------------------------------------------~------~~~~~~~~~~s~dg~~l~~~~~~~~- 367 (433)
T 3bws_A 342 -----------------------------------------------P------VFDKPNTIALSPDGKYLYVSCRGPN- 367 (433)
T ss_dssp -----------------------------------------------E------CSSSEEEEEECTTSSEEEEEECCCC-
T ss_pred -----------------------------------------------c------CCCCCCeEEEcCCCCEEEEEecCCC-
Confidence 0 2345678999999998887765410
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEE
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT 867 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~ 867 (945)
. .+..++++|+ ||.|++||+.+++.+..
T Consensus 368 --------------------------------------------~-------~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 368 --------------------------------------------H-------PTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp --------------------------------------------C-------TTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred --------------------------------------------c-------cccccccccccceEEEEEECCCCcEEEE
Confidence 0 0334567777 89999999999999888
Q ss_pred ecCCCCCeeEEEeecCCCceEEEeec-CceEEEEeccc
Q 002264 868 FMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV 904 (945)
Q Consensus 868 ~~~h~~~i~~l~~s~~~~~~lasg~~-dg~v~vwd~~~ 904 (945)
+.. ...+.+++|+| ++++|++++. |+.|++|++..
T Consensus 397 ~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 397 WEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 886 45799999999 8888887764 99999999864
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-28 Score=274.94 Aligned_cols=285 Identities=11% Similarity=0.082 Sum_probs=226.1
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccC------------------------------
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK------------------------------ 585 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~------------------------------ 585 (945)
.++.+++|+++|++++++. ++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678899999999777664 7789999999998 5555543211
Q ss_pred -----------------------cceEEEEEcCCCCEE-EEEECCCcEEEEECC--CCeeEEEeecCCCCCCccEEEEcC
Q 002264 586 -----------------------KSNGVVQFDTTQNHF-LAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 586 -----------------------~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
..+.+++|+|++++| ++++.||.|++||+. ++..+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 148899999999996 788899999999999 888888887555555899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (945)
++++|++++.+|.|++|++.++.. ...
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~---------------------------------------------------- 186 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKF---------------------------------------------------- 186 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSC----------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccc----------------------------------------------------
Confidence 999999999999999999876521 000
Q ss_pred CCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC---CCeEEEeeecCeEEEEeecCC
Q 002264 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS---AVGLLALGSNGVQKLWKWHRN 796 (945)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~l~~~~~dg~i~lw~~~~~ 796 (945)
.+ . .+ .+|...|.+++|+|+ +++|++++.|+.|++|++..
T Consensus 187 -----------------~~-----------~-----~~---~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~- 229 (450)
T 2vdu_B 187 -----------------TQ-----------E-----PI---LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ- 229 (450)
T ss_dssp -----------------CC-----------C-----CS---EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-
T ss_pred -----------------cc-----------e-----ee---ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-
Confidence 00 0 00 117778999999999 99999999999999998643
Q ss_pred CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCC----
Q 002264 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP---- 871 (945)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h---- 871 (945)
+..+...+.+ |...|.+++|+ |+++|++++ |++|++||+.+++++..+..+
T Consensus 230 ---------------------~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 285 (450)
T 2vdu_B 230 ---------------------CFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK 285 (450)
T ss_dssp ---------------------TTCEEEECCC--CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred ---------------------CceeeeeecC--CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence 2222222334 88999999999 999999999 899999999999988887632
Q ss_pred ---------------------CCCeeEEEeecCCCceEEEee-cCceEEEEec--ccc---eEEEEecCCCcceeEEEec
Q 002264 872 ---------------------PPASTFLAFHPQDNNIIAIGT-EDSTIHIYNV--RVD---EVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 872 ---------------------~~~i~~l~~s~~~~~~lasg~-~dg~v~vwd~--~~~---~~~~~l~~h~~~V~~l~~s 924 (945)
...|.+++|+| ++++|++++ .|+.|+||++ .++ +.+..+.+| +.|.+++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~ 363 (450)
T 2vdu_B 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAH 363 (450)
T ss_dssp GGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEE
T ss_pred hhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEec
Confidence 35699999999 899999998 8999999999 665 778888888 889999999
Q ss_pred CCcceeeeecC------CceEEEEec
Q 002264 925 TSLNILVSSGA------DAQVTLCVE 944 (945)
Q Consensus 925 ~dg~~l~s~~~------Dg~i~vWdl 944 (945)
|++.++++++. +..|.+|.+
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCcEEEEEecccCCCCCCcceEEEEE
Confidence 97655554443 556888875
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.8e-28 Score=271.08 Aligned_cols=302 Identities=8% Similarity=0.056 Sum_probs=243.4
Q ss_pred cccCCCCC--cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLP--RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~--~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|.++... ......+.+...+.+++|+|++. ++++++.++.|++||+.+++...... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 56555422 24555566666788999999554 78888889999999999887653211 113567
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
|...|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999887665 56678999999999999994 346666899999999 78
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEE--------cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++.+..+..+ ..+.+++|+| +++.+++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 8887777654 4588999876 557888887 5889999999887665544 33346889999999987766
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC---------------CCcEEEEECCCCeeE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~ 620 (945)
++. .++.|++||+.+++....+.. . ..+..++|+|+++++++++. ||.|++||+.+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPV-F-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecC-C-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 543 488999999999988887763 2 36889999999999998886 579999999999998
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~ 659 (945)
..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 395 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888763 26899999999999998875 9999999985
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-28 Score=267.30 Aligned_cols=277 Identities=13% Similarity=0.160 Sum_probs=212.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
-.|.+.|+|++|+|||+ +||+|+.+| ++||++.+++.... .+...+..++++++++.
T Consensus 16 ~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCE
Confidence 34899999999999999 589888665 78999887655421 12225788899999888
Q ss_pred EE-EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCE
Q 002264 421 VG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPV 497 (945)
Q Consensus 421 la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v 497 (945)
++ +|+.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CC
Confidence 84 57778999999999987765 343 67799999998764 33333 88999999 665 55555543 33
Q ss_pred EEEEeeecCCccEEEE--EEcCCeEEEEEccCCC----------------eeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 498 YSICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
..+++++ .++++ |+.||.|++||+.++. ....+..|...|.+++|+|+|++|++++.
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~- 215 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ- 215 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-
Confidence 4445544 34555 6899999999998765 25678889999999999999999999986
Q ss_pred CCCCce-EEEEeCCCCceeeEec-c-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE--EEe-----------
Q 002264 560 KDGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TST----------- 623 (945)
Q Consensus 560 ~d~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~----------- 623 (945)
|+. |++||+++++.+..+. + |.. .+.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 216 ---d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 291 (355)
T 3vu4_A 216 ---DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQS 291 (355)
T ss_dssp ---TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCC
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccc
Confidence 898 9999999999999998 5 554 8999999999999999999999999999765311 111
Q ss_pred -------ecC-CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 624 -------DAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 624 -------~~~-~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
... ........++|+++|+.+++++.||.+++|++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 292 EWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 011 11123477999999999999999999999998654
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.9e-28 Score=274.38 Aligned_cols=265 Identities=14% Similarity=0.246 Sum_probs=214.1
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
......|.+.|++++|+|++..+||+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45667799999999999985557999999999999999763111000 000001134678999999999999
Q ss_pred CCC-EEEEEECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceE
Q 002264 417 DGN-YVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKL 487 (945)
Q Consensus 417 ~g~-~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~ 487 (945)
++. +|++|+.||.|++|++.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999874331 223356789999999999995443 899999999999999 555 567
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCE-EEEEeecCCCCce
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSF 565 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~ 565 (945)
..+..|...|++++|+|.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++. +++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 7888999999999998853 24799999999999999998 4567778888999999999999964 666664 899
Q ss_pred EEEEeCCC--------------CceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 002264 566 LVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 566 i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (945)
|++||+.. .+.+..+.+|.. .+..++|+|++. ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356666777765 799999999998 8999999999999998753
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.8e-28 Score=270.54 Aligned_cols=309 Identities=14% Similarity=0.203 Sum_probs=233.2
Q ss_pred CCcEEEEEEeCCCC---------eEEEEEeC----cCcEEEEEcCCCCccccccccccccc--------ccCcccccccc
Q 002264 344 GSTVISMDFHPSHQ---------TLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMA--------ACSLPFQASIF 402 (945)
Q Consensus 344 ~~~V~~v~fsp~g~---------~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 402 (945)
.-+..++.|.|+.. ..+++|+. ...|.++++.-...........++.. .....+.....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 34678899998752 24677754 35677776541000000000001000 01111222345
Q ss_pred cCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCC-------cccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 403 KDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.+|.+.|++++|+|+ +.+||+|+.||.|++|++.+. ........+.+|...|++++|+|++.. +|++|+.|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~d 203 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASDD 203 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECTT
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeCC
Confidence 679999999999997 789999999999999999862 112333467899999999999999876 78999999
Q ss_pred CcEEEEe-CCCce-------EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC---CeeEEecCCCCeEEE
Q 002264 475 KLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTT 543 (945)
Q Consensus 475 ~~i~vwd-~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~ 543 (945)
|.|++|| ..+.. ...+.+|...|.+++|+|. ++.+|++++.||.|++||+++. .....+..+...|++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 9999999 44221 4567789999999999885 3479999999999999999987 456677788889999
Q ss_pred EEEcCCCCE-EEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCC----
Q 002264 544 MLYSADGSR-LFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN---- 616 (945)
Q Consensus 544 ~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---- 616 (945)
++|+|++.. +++++. ++.|++||+++ ...+..+..|.. .+.+++|+|++. .+++++.||.|++||+..
T Consensus 283 i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 283 LSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred EEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999984 667664 89999999998 567788888766 899999999985 688999999999999987
Q ss_pred ----------CeeEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 002264 617 ----------VNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ----------~~~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~~~ 661 (945)
...+..+..+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2445555444 44899999999999 9999999999999999754
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1e-27 Score=260.63 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=187.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+|...|.+++|||||++||+|+.++ +++|++++++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998775 7899998765432 1 22235888999998884 446788889999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEE-ee
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSC-GT 558 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~ 558 (945)
.+++.+..+. +...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ ..++++ +.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 8888888887 667899999865 2 34443 4889999999887 54444433 445566777 666665 32
Q ss_pred cCCCCceEEEEeCCCCc----------------eeeEeccccCcceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeeEE
Q 002264 559 SKDGDSFLVEWNESEGT----------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILT 621 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 621 (945)
.++.|++||+.++. .+..+.+|.. .+.+++|+|++++|++|+.||+ |++||+.+++++.
T Consensus 157 ---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 157 ---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---CTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 48899999999865 2677888877 8999999999999999999998 9999999999999
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+....|...|.+++|+|+|++|++++.|++|++||+..+
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 8873223458999999999999999999999999999765
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2e-26 Score=255.13 Aligned_cols=332 Identities=9% Similarity=0.072 Sum_probs=252.0
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEccCCCeeEEecCCCCeEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 544 (945)
++++++.|+.|++|| .+++.+..+..|. .+.+++|++ +++++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999 8888888888765 489999977 55655 677799999999999888877776655 79999
Q ss_pred EEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeeEEEe
Q 002264 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877663 36899999999999888877654 57889999999988 56778999999999999998888
Q ss_pred ecCCCCCCccEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~ 702 (945)
..+. .+.+++|+|+|+.+ ++++.++.|++||+.++. ....+
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~---------------------------------- 196 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTV---------------------------------- 196 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEE----------------------------------
Confidence 7643 56999999999988 566778999999997652 11100
Q ss_pred ccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEe
Q 002264 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (945)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 782 (945)
. +...+.+++|+|+|++++++
T Consensus 197 -----------------------------------------------------~------~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 197 -----------------------------------------------------K------VEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp -----------------------------------------------------E------CSSEEEEEEECTTSSEEEEE
T ss_pred -----------------------------------------------------e------cCCCccceEECCCCCEEEEE
Confidence 0 23356788999999999888
Q ss_pred e---ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceE-EecC-CCeEEEE
Q 002264 783 G---SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV-MSAT-GGKISLF 857 (945)
Q Consensus 783 ~---~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~l-a~~s-d~~i~iw 857 (945)
+ .++.|++||+.. ++.+.. +. ....+.+++|+|||+++ ++++ ++.|++|
T Consensus 218 ~~~~~~~~v~~~d~~~----------------------~~~~~~-~~---~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGT----------------------NKITAR-IP---VGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EECSSCCEEEEEETTT----------------------TEEEEE-EE---CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ecCcCCCcEEEEECCC----------------------CeEEEE-Ee---cCCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 8 589999997532 221111 22 12357899999999977 4555 8899999
Q ss_pred eccCceEEEEecCCCCCee---EEE------------eecCCC----------ceEEEeecCceEEEEecccceEEEEec
Q 002264 858 NMMTFKVMTTFMSPPPAST---FLA------------FHPQDN----------NIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 858 d~~~~~~~~~~~~h~~~i~---~l~------------~s~~~~----------~~lasg~~dg~v~vwd~~~~~~~~~l~ 912 (945)
|+.+++.+..+..|..+.. .+. |+. +. ..+...+.|..+++|++.+|...
T Consensus 272 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~---- 346 (391)
T 1l0q_A 272 DTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKS-NITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS---- 346 (391)
T ss_dssp ETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEE-SCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----
T ss_pred ECCCCcEEEEEECCcCCCccceeeeccccccccccccccc-ccccccccccceEEEEeCCCCceEEEEECCCCccc----
Confidence 9999999988877655421 122 322 11 34666677889999999888642
Q ss_pred CCCcceeEEEecCCcceeeee---cCCc
Q 002264 913 GHQKRITGLAFSTSLNILVSS---GADA 937 (945)
Q Consensus 913 ~h~~~V~~l~~s~dg~~l~s~---~~Dg 937 (945)
.+..+ ...|+++|.|.++. +.||
T Consensus 347 ~~~~~--~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 347 KKQNP--THTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp CSSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred CcCCC--eEEeCCCceEEEEEEEECCCC
Confidence 22232 36899999988764 3455
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=7.5e-28 Score=265.80 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=199.2
Q ss_pred CCcEEEEEE---eCCCCeEEEEEeCcCcEEEEEcCCCCccccc-----ccccccccccC-----cccccccccCCCccEE
Q 002264 344 GSTVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVSK-----PFKIWDMAACS-----LPFQASIFKDVPISVS 410 (945)
Q Consensus 344 ~~~V~~v~f---sp~g~~llasgs~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~h~~~V~ 410 (945)
+....++.| +|++..++++|. ++.|.+|+.......... ....|...... ..........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 346667777 455555666665 888999986433221110 01111110000 0000111234445555
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccc--cceeeccccccEEEEEEec--------CCCeeEEEEEeCCCcEEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~--------~~~~~~l~s~s~d~~i~vw 480 (945)
...+++++.+||+|+.|++|+|||+++++... ....+.+|.+.|.+++|+| |++ +|+|||.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 55666778899999999999999999876532 2335789999999999998 777 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------------------------
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY------------------------- 534 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------- 534 (945)
| .++.++..+.+|...|.+++|+|.+ +.+|++++.||+|++||+.++......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9 7788888888899999999999852 358999999999999999876543321
Q ss_pred cCCCCeEEEEEEc-CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEE------------------EEEcC
Q 002264 535 DAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV------------------VQFDT 595 (945)
Q Consensus 535 ~~~~~~i~~~~~s-~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 595 (945)
..+...+.++.|+ ++++.+++++. ++.+++||+..+.....+..+.. .+.. ..+++
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2344567788876 79999999885 89999999988776655544332 1111 22333
Q ss_pred -CCC-EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 596 -TQN-HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 596 -~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.+. ++++|+.||.|++||+.+++.......+.. +|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 333 556677899999999999988877766544 899999999999999998765 666655
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.9e-28 Score=261.30 Aligned_cols=274 Identities=8% Similarity=0.061 Sum_probs=203.0
Q ss_pred EecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 44 ~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------- 104 (343)
T 3lrv_A 44 MYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------- 104 (343)
T ss_dssp SSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT----------
T ss_pred hcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC----------
Confidence 345666 899999999999999 8888887776 456777777663 99999999999998642
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 615 (945)
.+.+||..+++.+..+...+...+.+++|+| +++++++++.||.|++||++
T Consensus 105 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~ 157 (343)
T 3lrv_A 105 ---------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE 157 (343)
T ss_dssp ---------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred ---------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence 3567888888866666533334799999999 99999999999999999999
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
+++.......+ +...|.+++|+|+|.+|++|+.||.|++||+.++......+.
T Consensus 158 ~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------------- 210 (343)
T 3lrv_A 158 DDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------------- 210 (343)
T ss_dssp SSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC--------------------------
T ss_pred CCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe--------------------------
Confidence 99987665443 234699999999999999999999999999976521100000
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
.
T Consensus 211 ------------------------------------------------------------------~------------- 211 (343)
T 3lrv_A 211 ------------------------------------------------------------------V------------- 211 (343)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEE
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKIS 855 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~ 855 (945)
.|...|++++|+|+|.+|+++++++|+
T Consensus 212 -----------------------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 212 -----------------------------------------------------DEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp -----------------------------------------------------CTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred -----------------------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 045566667777777777776655777
Q ss_pred EEeccCceEEEEecC---CCCCe--eEEEeecCCCceEEEeec-CceEEEEecccceEEEEecCCCcceeEEEecC---C
Q 002264 856 LFNMMTFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFST---S 926 (945)
Q Consensus 856 iwd~~~~~~~~~~~~---h~~~i--~~l~~s~~~~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d 926 (945)
+||+.+++....+.. |...+ .+++|+| ++++|++++. |+.|+||++.++...... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 777766655444433 33334 4699999 8999999998 999999999765433222 5677888888 8
Q ss_pred cceeeeecCCceEEEE
Q 002264 927 LNILVSSGADAQVTLC 942 (945)
Q Consensus 927 g~~l~s~~~Dg~i~vW 942 (945)
+..+++++.||.++++
T Consensus 314 ~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCEEEEEEETTEEEEE
T ss_pred cceeEEEecCCceEEE
Confidence 8888888888888776
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=262.46 Aligned_cols=267 Identities=8% Similarity=0.066 Sum_probs=210.3
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcE
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i 430 (945)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.++.|+|+ +++|+.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445676 699999999999999999876632 11 356778888888 9999999999
Q ss_pred EEEEccC---------CcccccceeeccccccEEEEEEec--CCCeeEEEEEeCCCcEEEEe-CCCceEEEec-CCCCCE
Q 002264 431 QLYSYAG---------SNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV 497 (945)
Q Consensus 431 ~vwd~~~---------~~~~~~~~~~~~h~~~v~~l~~s~--~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~-~~~~~v 497 (945)
++|+... ++.++. ...+|.+.|.+++|+| +++ ++++|+.|++|++|| .+++.+.... .|...+
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 9997663 322221 1225778999999999 999 899999999999999 7777766654 455689
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCee-EEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999987 6689999999999999999998887 67777 889999999999999999998 4499999999987
Q ss_pred eeeEeccccC--cce--EEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEE
Q 002264 576 IKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVT 647 (945)
Q Consensus 576 ~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~ 647 (945)
....+..+.. ..+ .+++|+|++++|++++. |+.|++|++......... .++..++|++ ++..++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7665543211 122 36999999999999998 999999999765443332 2567788888 88999999
Q ss_pred ECCCcEEEEECC
Q 002264 648 TADNGFKILANA 659 (945)
Q Consensus 648 ~~dg~i~iw~~~ 659 (945)
+.||.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999988654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=5.8e-26 Score=233.08 Aligned_cols=287 Identities=13% Similarity=0.067 Sum_probs=191.5
Q ss_pred cEEEEEEeCCC-Ce-EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 346 TVISMDFHPSH-QT-LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 346 ~V~~v~fsp~g-~~-llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.++.|-.-| +. .+++++ ...|++|+..++..-. ..+.+++|+.+|..+.++||..-|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWE----------------KLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEE----------------EEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccce----------------eeEEEeccCceeEEEEEcCcccceee
Confidence 46666665443 32 244554 7899999999873211 11335667777777777775433322
Q ss_pred EE-CCCcE-EEEEcc--CC-cccccceeeccccccEEEEEEecCCCeeEEEEEe--CCCcEEEEe--CCCceEEEecCCC
Q 002264 424 AF-TKHLI-QLYSYA--GS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHE 494 (945)
Q Consensus 424 ~~-~dg~i-~vwd~~--~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd--~~~~~~~~~~~~~ 494 (945)
.. .+=.+ .++-+. .. +.......-.+|...|.++ ++++ ++.+++ .|+.|++|+ .+|+.+..+.+|.
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 21 11111 111111 00 1111111112344444443 4454 444433 588899998 4577888888999
Q ss_pred CCEEEEEeee-cCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC---eEEEEEEcCCCCEEEEEee--------cCCC
Q 002264 495 APVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGT--------SKDG 562 (945)
Q Consensus 495 ~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~--------~~d~ 562 (945)
..++.++|++ .+++.+|++++.|++|++||+.+++....+..+.. .+.+++|+|+|.++++++. .+..
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 9999999998 66789999999999999999999999988876443 5778899999998865331 1224
Q ss_pred CceEEEEeCCCCceeeEe-----ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 563 DSFLVEWNESEGTIKRTY-----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
+++|++||..+++.+..+ .+|.. .+. ..+.++..+++++.||+|+|||+.+++++..+..|.. ..+.+++|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs~vaf 334 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAG-RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWSFVKW 334 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCC-CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCEEEE
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcc-eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEEEEEE
Confidence 899999999999887665 24443 232 3333478899999999999999999999999976543 13446899
Q ss_pred cCCCCEEEEEECCCcEEEEEC
Q 002264 638 SKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999985
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=4.8e-27 Score=259.29 Aligned_cols=250 Identities=6% Similarity=-0.066 Sum_probs=175.0
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC---
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--- 416 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--- 416 (945)
...|...+....+++++. +||+|+.|++|+|||..+++..... ....+.+|.+.|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~ 149 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYS 149 (393)
T ss_dssp CC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEEC
T ss_pred ccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccc
Confidence 334555666666666776 6999999999999999887654211 1134789999999999998
Q ss_pred -----CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-
Q 002264 417 -----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (945)
Q Consensus 417 -----~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~- 489 (945)
||++||+|+.|++|+|||+.++..+. .+.+|..+|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 150 ~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 150 ADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp TTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-----
T ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccc
Confidence 89999999999999999998876554 56679999999999999865 799999999999999 66654322
Q ss_pred ------------------------ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 490 ------------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 490 ------------------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
..+|...+.++.|.. +++..+++++.|+++++||+........+..+...+..+.
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 245777888888863 4778999999999999999987665554444333333222
Q ss_pred ------------------EcC-CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC
Q 002264 546 ------------------YSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 546 ------------------~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
++| .+..+++++. .++.|++||..+++....+.++.. .|.+++|+|+|++|++++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs---~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHS---QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEET---TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESS
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEEC---CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCC
Confidence 333 3344444332 389999999999998888888776 89999999999999999877
Q ss_pred CcEEEEEC
Q 002264 607 SQIKFWDM 614 (945)
Q Consensus 607 g~i~iwd~ 614 (945)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 6 555554
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8e-25 Score=250.11 Aligned_cols=335 Identities=11% Similarity=0.075 Sum_probs=248.1
Q ss_pred EecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEc--cCCCeeEEec
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYD 535 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 535 (945)
|+|++. ++++++.|++|.+|| .+++++.++..+.. +.+++|+| +|++|++++.|++|.+||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778887 889999999999999 88999988884333 88888876 6789999999999999999 7777666666
Q ss_pred CCCCeEEEEEEcC----CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc----------cCcceEEEEEcCCCCEEE
Q 002264 536 APGHWCTTMLYSA----DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 536 ~~~~~i~~~~~s~----~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~ 601 (945)
.+..+..++|+| ||+++++++. .++.|.+||..+++++..+..+ ....+..+.++|++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 455689999999 9999998874 3789999999999998887652 233577899999876655
Q ss_pred E-EECCCcEEEEECCCCeeEE--EeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCcccccc
Q 002264 602 A-VGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 602 ~-~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
+ ...++.|.+||+.+.+.+. .+.. ...+.+++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~----- 366 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK----- 366 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-----
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC-----
Confidence 4 5588999999998866544 3332 23678999999999877665 5889999999887 3322221100
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceEEEEEecC-CCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCcee
Q 002264 758 PESTDTSSKVVRLLYTNS-AVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP 835 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~d-g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 835 (945)
..|......+ ++|+ |..++++. .|++|.+|++....... ...+.+. .+.+ |...+.
T Consensus 367 ---~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------------~~~~~v~-~l~~--~g~~~~ 424 (543)
T 1nir_A 367 ---TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------------YAWKKVA-ELQG--QGGGSL 424 (543)
T ss_dssp ---SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------TBTSEEE-EEEC--SCSCCC
T ss_pred ---CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------------hcCeEEE-EEEc--CCCCce
Confidence 0032222222 4677 44455544 47999999875421000 0011111 2444 667788
Q ss_pred EEeecCCCceEEecC--------CCeEEEEeccCceEE-EEe--------cCCCCCeeEEEeecCCCceEEEee-----c
Q 002264 836 CIALSKNDSYVMSAT--------GGKISLFNMMTFKVM-TTF--------MSPPPASTFLAFHPQDNNIIAIGT-----E 893 (945)
Q Consensus 836 ~l~~s~dg~~la~~s--------d~~i~iwd~~~~~~~-~~~--------~~h~~~i~~l~~s~~~~~~lasg~-----~ 893 (945)
.++++|||++|++++ +++|.|||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 999999999999986 458999999998876 443 34567799999999 888777653 4
Q ss_pred CceEEEEecccceEEEEecCC
Q 002264 894 DSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 894 dg~v~vwd~~~~~~~~~l~~h 914 (945)
|+.|.|||..+++++.+++.+
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCceEEEeecCC
Confidence 799999999999999999865
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=6.1e-25 Score=251.11 Aligned_cols=316 Identities=13% Similarity=0.056 Sum_probs=241.3
Q ss_pred CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCceeeEecccc
Q 002264 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~~~~~~~~ 584 (945)
++.++++++.|++|.+||..+++....+..... +..++|+|||+++++++. ++.|.+||+ .+++.+..+....
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECCS
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEecCC
Confidence 568899999999999999999988888774433 889999999999999985 689999999 8888888887433
Q ss_pred CcceEEEEEcC----CCCEEEEEE-CCCcEEEEECCCCeeEEEeecCC---------CCCCccEEEEcCCCCE-EEEEEC
Q 002264 585 KKSNGVVQFDT----TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG---------GLPNLPRLRFSKEGNL-LAVTTA 649 (945)
Q Consensus 585 ~~~~~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~sp~g~~-l~~~~~ 649 (945)
....++|+| +|+++++++ .++.|.+||..+++++..+...+ ....+.++.++|++.. +++...
T Consensus 223 --~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 223 --EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 578899999 999999988 58999999999999998887532 1226789999997665 556667
Q ss_pred CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCc
Q 002264 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (945)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (945)
++.|.+||..+... +.
T Consensus 301 ~g~i~vvd~~~~~~-l~--------------------------------------------------------------- 316 (543)
T 1nir_A 301 TGKVLLVNYKDIDN-LT--------------------------------------------------------------- 316 (543)
T ss_dssp TTEEEEEECTTSSS-CE---------------------------------------------------------------
T ss_pred CCeEEEEEecCCCc-ce---------------------------------------------------------------
Confidence 89999999876521 00
Q ss_pred cccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeee
Q 002264 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASA 808 (945)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (945)
+..+ . +...+..++|+|+|+++++++ .+++|.+||... ++.....
T Consensus 317 ----------~~~i------------~------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t------g~l~~~i 362 (543)
T 1nir_A 317 ----------VTSI------------G------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD------RRLSALV 362 (543)
T ss_dssp ----------EEEE------------E------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT------TEEEEEE
T ss_pred ----------eEEe------------c------cCcCccCceECCCCCEEEEEecCCCeEEEEECCC------CeEEEee
Confidence 0000 0 122345688999999877665 478999997532 2221110
Q ss_pred ccccccCCCcccccccccCCCcCCceeEEeecCC-CceEEecC--CCeEEEEeccC-------ceEEEEecCCCCCeeEE
Q 002264 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT--GGKISLFNMMT-------FKVMTTFMSPPPASTFL 878 (945)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d-g~~la~~s--d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l 878 (945)
. . + ...|.+....+ ++|+ |.++++++ +++|.|||+.+ ++++.++.+|.+.+..+
T Consensus 363 ~-----~--g--------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 363 D-----V--G--------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp E-----C--S--------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred c-----c--C--------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE
Confidence 0 0 0 01143333333 4676 67777764 68999999998 89999999999999999
Q ss_pred EeecCCCceEEEee-------cCceEEEEecccceEE-EEe--------cCCCcceeEEEecCCcceeeee-----cCCc
Q 002264 879 AFHPQDNNIIAIGT-------EDSTIHIYNVRVDEVK-SKL--------KGHQKRITGLAFSTSLNILVSS-----GADA 937 (945)
Q Consensus 879 ~~s~~~~~~lasg~-------~dg~v~vwd~~~~~~~-~~l--------~~h~~~V~~l~~s~dg~~l~s~-----~~Dg 937 (945)
+|+| ++++|++++ .+++|.|||+.+++.. ..+ ..+...+..++|+|||++|+++ +.|+
T Consensus 427 ~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 427 KTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp ECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCC
T ss_pred EcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCC
Confidence 9999 999999987 3789999999998876 554 4567899999999999998865 3489
Q ss_pred eEEEEec
Q 002264 938 QVTLCVE 944 (945)
Q Consensus 938 ~i~vWdl 944 (945)
.|.|||.
T Consensus 506 ~i~v~D~ 512 (543)
T 1nir_A 506 ALVVVDD 512 (543)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 9999996
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.7e-25 Score=244.68 Aligned_cols=304 Identities=8% Similarity=0.019 Sum_probs=231.0
Q ss_pred CcEEEEEEeCCCCeEEEEEe----CcC----cEEEEEc--CCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..|...+|++.|..++++|+ .|| +|+|||+ .+++.+.. ..+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-----------------NSYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-----------------EEEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-----------------eEEEcChhHHHHHHH
Confidence 47888999999987788886 457 8999999 88876532 225567777777766
Q ss_pred cC--------------CCCEEEEEECC------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 415 s~--------------~g~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
++ .+..++.++.+ +.|++||++++ ..+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26677766654 79999999853 333 5678999999999999999 78888877
Q ss_pred C---cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEE-EEEcCCe--EEEEEccCCCeeEEecCCCCeEEEEEEc
Q 002264 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (945)
Q Consensus 475 ~---~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s 547 (945)
+ .|++|| .+++. ..+..|...+.+++|+| +|+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 66665 46777888999999987 567666 6666654 99999987665 4566677789999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEee
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (945)
|||+.|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998874 223448999999887643 3333333 67789999999999988854 589999999988743 43
Q ss_pred cCCCCCCccEEEEcCCCCEEEEEECCC---cEEEEECCCCccccccccCCccccccCcceeeeecccc
Q 002264 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g 689 (945)
.+ . .+.+++|+|||++|++++.++ .|++||+..+ ..+.+..+. +.+.+++|+|.-
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~-----~~v~~~~~~~~~ 409 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATD-----GQVKFPAWSPYL 409 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSS-----SEEEEEEECCCC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCC-----CCCcCCcccccc
Confidence 32 2 689999999999999988877 7999998754 334444433 458889998863
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.7e-23 Score=232.18 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=220.7
Q ss_pred CEEEEEeeecCCccEEEEEE----cCC----eEEEEEc--cCCCeeE--EecCCCCeEEEEEEcC--------------C
Q 002264 496 PVYSICPHHKENIQFIFSTA----IDG----KIKAWLY--DTMGSRV--DYDAPGHWCTTMLYSA--------------D 549 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~----~dg----~i~iwd~--~~~~~~~--~~~~~~~~i~~~~~s~--------------~ 549 (945)
.+....|.+.+ ..++++|+ .|| .+++||+ .+++.+. .+..+...+..+++++ .
T Consensus 64 ~~~~~~w~~~g-~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALG-IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTT-CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcC-CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 45555665542 35666776 467 8999999 8887663 4666666565555553 2
Q ss_pred CCEEEEEeecCCCC---ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeeEEEe
Q 002264 550 GSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTST 623 (945)
Q Consensus 550 ~~~l~~~~~~~d~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 623 (945)
+..++.++.+. ++ +.|++||+.. ...+.+.++.. .+.+++|+|+|+.|++++.++ .|++||+.+++... +
T Consensus 143 ~~~l~~~s~~~-~~~~~~~i~i~d~~g-~~~~~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 143 RTRIAYVVQTN-GGQFPYELRVSDYDG-YNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp TCEEEEEEECS-SSSCCEEEEEEETTS-CSCEEEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CCEEEEEEecC-CCCccceEEEEcCCC-CCCEEEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 66777666532 23 7999999974 44566666665 789999999999999999775 99999999988764 3
Q ss_pred ecCCCCCCccEEEEcCCCCEEE-EEECCCc--EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLA-VTTADNG--FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
..+ ...+.+++|+|||+.|+ +++.++. |++||+.++.. ..+
T Consensus 219 ~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l-------------------------------- 262 (415)
T 2hqs_A 219 ASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQV-------------------------------- 262 (415)
T ss_dssp ECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEC--------------------------------
T ss_pred ecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeC--------------------------------
Confidence 333 23789999999999888 5555554 88899876521 100
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
.. +...+.+++|+|||+.|+
T Consensus 263 ---------------------------------------------------------~~---~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 263 ---------------------------------------------------------TD---GRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp ---------------------------------------------------------CC---CSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------cC---CCCcccceEECCCCCEEE
Confidence 00 445678899999999888
Q ss_pred Eeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-C---CeEE
Q 002264 781 ALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G---GKIS 855 (945)
Q Consensus 781 ~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d---~~i~ 855 (945)
+++. ++...+|.+ +..+++... +.. +...+.+++|||||++|++++ + ..|+
T Consensus 283 ~~s~~~g~~~i~~~--------------------d~~~~~~~~--l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 283 FTSDQAGRPQVYKV--------------------NINGGAPQR--ITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp EEECTTSSCEEEEE--------------------ETTSSCCEE--CCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred EEECCCCCcEEEEE--------------------ECCCCCEEE--Eec--CCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 8876 454444422 233333211 222 556788999999999999887 3 3699
Q ss_pred EEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCc---eEEEEecccceEEEEecCCCcceeEEEecCCcc
Q 002264 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS---TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 856 iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
+||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. +..+..+.+|.+.|.+++|+|.-.
T Consensus 339 ~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 339 KQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 999998877 4565554 899999999 899999888877 79999987 556788999999999999999754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=9.8e-24 Score=254.57 Aligned_cols=333 Identities=12% Similarity=0.063 Sum_probs=229.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeC-cC-----cEEEEEcCCCCcccccccccccccc-----cCcccccccccCCCccEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWDMAA-----CSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~i 412 (945)
...|.+++|||||++ |++++. |+ +|.+||+.+++.............. .........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999995 777776 88 9999999988754211000000000 00000000000001348899
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCc--ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ +|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 233 4567888999999999999 777777 56999999 55555443
Q ss_pred ecCCCCC----------------EEEEEeeecCCccEEEEEEcCC---------------------------------eE
Q 002264 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (945)
Q Consensus 490 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 520 (945)
...+... +.+++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 3333332 36678876 678888887765 78
Q ss_pred EEEEccC-CCeeEEec--CCCCeEEEEEEcCCCCEEEEEeec-CCCCceEEEEeCCCCceeeEeccccCc---ceEEEEE
Q 002264 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (945)
Q Consensus 521 ~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~-~d~~~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~ 593 (945)
.+||+.+ ++...... .+...+..++| |||+.|++.+.+ ...+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 25568899999 999999977642 234678999999999887777655432 2356899
Q ss_pred cCCCCEEEEEECCCcEEEEECC-CCeeEEEeecCCCCCCccEE-EEcCCCCEEEEEEC-CC--cEEEEECCCCccccccc
Q 002264 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTA-DN--GFKILANAIGLRSLRAV 668 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~sp~g~~l~~~~~-dg--~i~iw~~~~~~~~~~~~ 668 (945)
+|+|+.+++++.||.+.+|.++ ++. ...+..+. ..+..+ .|+|+|+.|+..+. ++ .+++|++.........+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 9999988888899988887765 344 55555443 367777 59999998765544 44 89999986432333333
Q ss_pred cCCccccccCcceeeeecccccceeccC
Q 002264 669 ENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 669 ~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
.. ...+..++|+|||+.++...
T Consensus 422 ~~------~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 422 SK------APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp CC------SCSEEEEEECTTSSEEEEEE
T ss_pred cc------CCCceEEEECCCCCEEEEEe
Confidence 32 12366899999999987643
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.5e-23 Score=253.08 Aligned_cols=324 Identities=12% Similarity=0.033 Sum_probs=233.4
Q ss_pred cccEEEEEEecCCCeeEEEEEeC-CC-----cEEEEe-CCCceEEEecCCCCC------------------------EEE
Q 002264 451 VGAVNDLAFAYPNKLLCVVTCGD-DK-----LIKVWE-LSGRKLFNFEGHEAP------------------------VYS 499 (945)
Q Consensus 451 ~~~v~~l~~s~~~~~~~l~s~s~-d~-----~i~vwd-~~~~~~~~~~~~~~~------------------------v~~ 499 (945)
...+.+++|+|||+ +|++++. |+ .|++|| .+++....+..+... +.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 45699999999999 7888887 88 899999 777766666544332 677
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
++|+| ||++|++++. +.|.+||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECT--TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECC--CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 88876 6788888886 999999998873 3445556667899999999999999886 568999999988776
Q ss_pred eEeccccCcc---------------eEEEEEcCCCCEEEEEECCC---------------------------------cE
Q 002264 578 RTYAGFRKKS---------------NGVVQFDTTQNHFLAVGEDS---------------------------------QI 609 (945)
Q Consensus 578 ~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~dg---------------------------------~i 609 (945)
.....+.... +..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5544332211 36689999999999988665 78
Q ss_pred EEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-----CCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 610 KFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-----DNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++.. ..
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~----------------- 326 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RV----------------- 326 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EE-----------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EE-----------------
Confidence 9999988 876554433233447889999 99999997764 34577777655410 00
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
T Consensus 327 -------------------------------------------------------------------------------- 326 (741)
T 2ecf_A 327 -------------------------------------------------------------------------------- 326 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCC
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg 843 (945)
+.....++ .-..+.+++|+|||
T Consensus 327 ---------------~~~~~~~~-------------------------------------------~~~~~~~~~~spdg 348 (741)
T 2ecf_A 327 ---------------LAHETSPT-------------------------------------------WVPLHNSLRFLDDG 348 (741)
T ss_dssp ---------------EEEEECSS-------------------------------------------CCCCCSCCEECTTS
T ss_pred ---------------EEEcCCCC-------------------------------------------cCCcCCceEECCCC
Confidence 00000000 00123457888888
Q ss_pred ceEEecC-CCeEEEEecc-CceEEEEecCCCCCeeEE-EeecCCCceE-EEeecCc--eEEEEeccc-ceEEEEecCCCc
Q 002264 844 SYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPASTFL-AFHPQDNNII-AIGTEDS--TIHIYNVRV-DEVKSKLKGHQK 916 (945)
Q Consensus 844 ~~la~~s-d~~i~iwd~~-~~~~~~~~~~h~~~i~~l-~~s~~~~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h~~ 916 (945)
+++++++ +|.++||.++ +++ ...+..|...|..+ .|+| +++.| ++++.++ .++||++.. +..+..+.. ..
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 8777777 6766666554 344 67788788888887 5999 77655 5556565 899999874 666677775 66
Q ss_pred ceeEEEecCCcceeeeecCC----ceEEEEec
Q 002264 917 RITGLAFSTSLNILVSSGAD----AQVTLCVE 944 (945)
Q Consensus 917 ~V~~l~~s~dg~~l~s~~~D----g~i~vWdl 944 (945)
.+.+++|||||++|+....+ ..+.+|++
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 78899999999998876443 46777774
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=4.2e-24 Score=257.16 Aligned_cols=321 Identities=9% Similarity=0.081 Sum_probs=226.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc---cEEEEEEcCCCCEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~s~~g~~la 422 (945)
.+.+++|||||+ ++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 577899999999 4666 679999999999887542 2444543 499999999999999
Q ss_pred EEECC---------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 423 s~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+++.+ +.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++|| .+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7788999998865 22223345666689999999999 6777774 7999999 66666655554
Q ss_pred CCCCE------------------EEEEeeecCCccEEEEEEcCC----------------------------------eE
Q 002264 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (945)
Q Consensus 493 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 520 (945)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 6788876 668888887553 79
Q ss_pred EEEEccCCCeeEEecCC------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce----EE
Q 002264 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~----~~ 590 (945)
++||+.+++....+..+ ...+..++|+|||+.+++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887755555543 457899999999998877765333457899999999987776654432232 36
Q ss_pred EEEcCCCCEEEEE--ECCC------cEEEEE-CCCCee--EEEeecCCCCCCccE-EEEcCCCCEEEEEECC---CcEEE
Q 002264 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (945)
Q Consensus 591 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~sp~g~~l~~~~~d---g~i~i 655 (945)
++|+|+|+.|+.. ..++ .|++|| ..++.. ...+... + ..+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977764 4666 577787 444441 3333321 1 23444 6999999999877665 78999
Q ss_pred EECCCCcc-ccccccCCccccccCcceeeeecccccceeccCC
Q 002264 656 LANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 656 w~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
|++..... ....+.... .....+..++|+|||+.++....
T Consensus 389 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDL--VENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTS--SSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccc--cCCCCeEEEEECCCCCEEEEEcc
Confidence 99865421 222222100 01234678999999998876544
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=7.1e-22 Score=236.77 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=165.3
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCccc-ccceeecccc-----------------ccEEEEEEecCCCeeEEEE
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVVT 470 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~~s~~~~~~~l~s 470 (945)
+..+.|+ |+.+++++.|+ | +||+.+|+.+ . .+..|. ..|.+++|+|| . .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457888 67777787888 8 9999998763 3 222232 56999999999 5 3444
Q ss_pred EeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-----CCeeEEecCCCCe-----
Q 002264 471 CGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW----- 540 (945)
Q Consensus 471 ~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----- 540 (945)
+. ++.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EE-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 43 5999999944444455566777788889877 66788884 789999999988 6555433333222
Q ss_pred ---------EEEEEEcCCCCEEEEEeecC-----------------------------CCCceEEEEeCCCCceeeEecc
Q 002264 541 ---------CTTMLYSADGSRLFSCGTSK-----------------------------DGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 541 ---------i~~~~~s~~~~~l~~~~~~~-----------------------------d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
+.++.|+|||++|++++.+. ..+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999999999887321 1357899999999886554432
Q ss_pred -ccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeeEEEeecCCCC---CCccEEEEcC--CCCEEEEEECCC
Q 002264 583 -FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSK--EGNLLAVTTADN 651 (945)
Q Consensus 583 -~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp--~g~~l~~~~~dg 651 (945)
.....+..++|+|+|+.|++++.++ .|++||+.+++....+...... ..+.+++|+| ||+++++++.|+
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2233688899999999999988665 8999999998333333211111 1346789999 999998888888
Q ss_pred cEEEEECC
Q 002264 652 GFKILANA 659 (945)
Q Consensus 652 ~i~iw~~~ 659 (945)
.+++|.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.4e-21 Score=210.70 Aligned_cols=279 Identities=10% Similarity=0.055 Sum_probs=203.7
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC-CC
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~-dg 428 (945)
..|.+++++++++++.++.|.+||..+++.... +..+...+ +++|+|+|+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777787889999999999999998876532 22345556 9999999997777666 88
Q ss_pred cEEEEEccCCcc-cccceeeccccccEEEEEEecCCCeeEEEEEeCCC---cEEEEe-CCCceEEEecCCCCCEEEEEee
Q 002264 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~---~i~vwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..++ .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666665699999999 666555443 899999 777777776644 456889997
Q ss_pred ecCCcc-EEEEEEcCCe-EEEEEccCCCeeE----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce-
Q 002264 504 HKENIQ-FIFSTAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (945)
Q Consensus 504 ~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~- 576 (945)
| +|+ ++++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 455 4455566688 9999988654432 22233456789999999998777653 478999999999888
Q ss_pred --eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee--EEEeecC--CCCCC---ccEEEEcCCCCEEEE
Q 002264 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE--GGLPN---LPRLRFSKEGNLLAV 646 (945)
Q Consensus 577 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~v~~sp~g~~l~~ 646 (945)
+..+... ..+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|||++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7666654 2467799999999887765 578899999999887 4433322 11111 245899999998876
Q ss_pred EEC-CCcEEEEECCCC
Q 002264 647 TTA-DNGFKILANAIG 661 (945)
Q Consensus 647 ~~~-dg~i~iw~~~~~ 661 (945)
++. ++.|.+|++.+.
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999999765
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.7e-22 Score=243.19 Aligned_cols=347 Identities=10% Similarity=0.055 Sum_probs=229.9
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC---CEEEEEeeecCCccEEEEEEcC---------Ce
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA---PVYSICPHHKENIQFIFSTAID---------GK 519 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d---------g~ 519 (945)
.+.+++|+|||+ ++++ +.||+|++|| .+++....+..|.. .|.+++|+| ||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~--~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTE--FIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSC--BCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCc--EEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceee
Confidence 467899999999 6666 7899999999 88888777777765 489999977 67899998774 78
Q ss_pred EEEEEccCCCeeEEecC---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc----------
Q 002264 520 IKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK---------- 586 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~---------- 586 (945)
+.+||+.+++. ..+.. +...+..++|||||+.|++++ ++.|++||+.+++..+....+...
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-----~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEE-----CCeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 88999988765 22322 233478899999999999987 578999999998877665543321
Q ss_pred -------ceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 587 -------SNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 587 -------~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.+..++|+|||+.|++++. ++.+.+|++..... .....+..+.|.++|.. ..+..|++||+
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~----~~~~~l~~~d~ 235 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE----NPSISLHVIGL 235 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----CCEEEEEEEES
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----CCeeEEEEEEC
Confidence 1256888888888888764 34666776543211 11224677777777652 23457888887
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
.++. ....+..+..
T Consensus 236 ~~~~-~~~~l~~~~~----------------------------------------------------------------- 249 (723)
T 1xfd_A 236 NGPT-HDLEMMPPDD----------------------------------------------------------------- 249 (723)
T ss_dssp SSSC-CCEECCCCCC-----------------------------------------------------------------
T ss_pred CCCc-eeEEeeCCcc-----------------------------------------------------------------
Confidence 6652 1111110000
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeec----CeEEEEeecCCCCCCCCceeeeecccccc
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN----GVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d----g~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (945)
+ ..+...+..++|+|||+.+++.... ..|++||+
T Consensus 250 ------------------~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~--------------------- 287 (723)
T 1xfd_A 250 ------------------P---RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA--------------------- 287 (723)
T ss_dssp ------------------G---GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET---------------------
T ss_pred ------------------C---CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC---------------------
Confidence 0 0034567889999999987666542 45666654
Q ss_pred CCCcccccccccCCCcCCce----eEEeecCCCceEEec-C--CC------eEEEEe-ccCce--EEEEecCCCCCeeE-
Q 002264 815 PSSGLLMANDVAGVNLEEAV----PCIALSKNDSYVMSA-T--GG------KISLFN-MMTFK--VMTTFMSPPPASTF- 877 (945)
Q Consensus 815 ~~~~~~~~~~l~~~~~~~~i----~~l~~s~dg~~la~~-s--d~------~i~iwd-~~~~~--~~~~~~~h~~~i~~- 877 (945)
.+++........ +...+ ..++|||||+.|+.. + ++ .|.+|| ..+++ +...+..+...+..
T Consensus 288 -~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 288 -TTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (723)
T ss_dssp -TTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred -CCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence 333321110011 22333 378999999988865 3 56 477777 34444 14555544444554
Q ss_pred EEeecCCCceEEEeecC---ceEEEEecccc--eEEEEecC---CCcceeEEEecCCcceeeee
Q 002264 878 LAFHPQDNNIIAIGTED---STIHIYNVRVD--EVKSKLKG---HQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 878 l~~s~~~~~~lasg~~d---g~v~vwd~~~~--~~~~~l~~---h~~~V~~l~~s~dg~~l~s~ 933 (945)
++|+| +++.|+..+.+ +.+++|++... .....+.. |...+..++|+|||++|+..
T Consensus 365 ~~~sp-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 365 LAYDE-KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEET-TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eEEcC-CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 79999 88887665554 78999998743 23444543 67789999999999988764
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.5e-21 Score=209.59 Aligned_cols=275 Identities=11% Similarity=0.091 Sum_probs=212.4
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeC------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
......+..++|+|+|+++++++.. ++.|.+||..+++.+.. +. ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 3445688999999999975444432 67899999998876532 11 1234678999
Q ss_pred cCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccc---------cEEEEEEecCCCeeEEEEE--eCCCcEEEEe-
Q 002264 415 SPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTC--GDDKLIKVWE- 481 (945)
Q Consensus 415 s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd- 481 (945)
+|+|++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+. ++++ +.++.|.+||
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWVVDG 171 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEEEET
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEEEcC
Confidence 9999966555 4578999999999876553 333322 2789999999995 4433 4588999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC----CCCeEEEEEEcCCCCEEEEEe
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+++.+..+..+...+.+++|++ +++.+++++.++.|.+||..+++....+.. +...+..++|+|++++++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 78888888775666688888876 567899999999999999998887766654 344678899999999888776
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
. .++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++
T Consensus 250 ~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 320 (353)
T 3vgz_A 250 S---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLA 320 (353)
T ss_dssp S---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEE
T ss_pred C---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEE
Confidence 4 368999999999998887775432 4589999999777766 68999999999999988887543 578999
Q ss_pred EcCCCCEEEEEECCC
Q 002264 637 FSKEGNLLAVTTADN 651 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg 651 (945)
|+|+|++++++..++
T Consensus 321 ~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADGKTLYVSVKQK 335 (353)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EcCCCCEEEEEEccc
Confidence 999999887776553
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=8.4e-22 Score=236.18 Aligned_cols=317 Identities=12% Similarity=0.099 Sum_probs=218.6
Q ss_pred EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE-EEecCCC-----------------CCEEEEEeeecCCccEEEEE
Q 002264 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FNFEGHE-----------------APVYSICPHHKENIQFIFST 514 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~l~s~ 514 (945)
+..+.|+ |. .+++++.|+ | +|| .+|+.+ ..+..+. ..|.+++|+|+ ..++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd---~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR---GLVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT---TEEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC---CeEEEE
Confidence 4557888 55 566677777 8 999 777663 3443332 46899999774 344444
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-----CceeeEeccccCcc--
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-----GTIKRTYAGFRKKS-- 587 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-----~~~~~~~~~~~~~~-- 587 (945)
.++.|++||+.+++... +..+...+.+++|+|||+.|+++. ++.|++||+.+ ++.......+....
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 46999999998765443 344455688899999999999864 78999999998 77665444333211
Q ss_pred -----------eEEEEEcCCCCEEEEEE---------------------------------CCCcEEEEECCCCeeEEEe
Q 002264 588 -----------NGVVQFDTTQNHFLAVG---------------------------------EDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 588 -----------~~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 623 (945)
+..++|+|+|++|++++ .++.|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 46799999999999987 4467999999998876554
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCC-----cEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADN-----GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
....+...+.+++|+|||+.|++++.++ .|++||+.++... ..
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~------------------------------- 299 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RT------------------------------- 299 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EE-------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eE-------------------------------
Confidence 3333344688999999999999887665 7777777654100 00
Q ss_pred CCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
T Consensus 300 -------------------------------------------------------------------------------- 299 (706)
T 2z3z_A 300 -------------------------------------------------------------------------------- 299 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC--CCceEEecC-CCeEE
Q 002264 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK--NDSYVMSAT-GGKIS 855 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~--dg~~la~~s-d~~i~ 855 (945)
+......+ ....+.+++|+| ||+++++++ ++.++
T Consensus 300 ~~~~~~~~-------------------------------------------~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 300 LFVETDKH-------------------------------------------YVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EEEEECSS-------------------------------------------CCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred EEEccCCC-------------------------------------------eECccCCceeecCCCCEEEEEEccCCccE
Confidence 00000000 011235578888 888888887 77788
Q ss_pred EEecc-CceEEEEecCCCCCeeE-EEeecCCCceEEE-eecCc----eEEEEecccceEEEEecCCCcceeEEEecCCcc
Q 002264 856 LFNMM-TFKVMTTFMSPPPASTF-LAFHPQDNNIIAI-GTEDS----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 856 iwd~~-~~~~~~~~~~h~~~i~~-l~~s~~~~~~las-g~~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
||+++ +++.+..+..+...+.+ ++|+| +++.|+. ++.++ .|+.||+.+++ +..+. |...+.+++|||||+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS 413 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC
Confidence 88776 66777888878777877 89999 7766554 44444 67777777765 44454 677899999999999
Q ss_pred eeeeecCC----ceEEEEec
Q 002264 929 ILVSSGAD----AQVTLCVE 944 (945)
Q Consensus 929 ~l~s~~~D----g~i~vWdl 944 (945)
+|+.++.+ +.|++||+
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEEEEEECSSCSCEEEEEES
T ss_pred EEEEEecCCCCCcEEEEEEC
Confidence 98876443 56999986
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.2e-21 Score=207.27 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=191.0
Q ss_pred EEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC-Ccc
Q 002264 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (945)
Q Consensus 362 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~-~~~ 440 (945)
+++.|++|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999998876532 445788999999999999999987 78999999998 765
Q ss_pred cccceeeccc-cccEEEEEEecCCCeeEEEEEe--CCCcEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEE-EE
Q 002264 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (945)
Q Consensus 441 ~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~ 514 (945)
.. ....| ...+.+++|+|+++ ++++++ .++...+|. ..+.....+..+. .+..++|+| +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 43 33344 46789999999999 777777 345556655 4444455555444 488888877 556665 78
Q ss_pred EcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCceeeEeccccCcceEEEE
Q 002264 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (945)
Q Consensus 515 ~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 592 (945)
+.++.+++|+++.. .....+..+...+.+++|+|+++.+++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 89999999997543 344455566678999999999999887763 25667777765 4445556665544 678899
Q ss_pred EcCCCCEEEEEECC-----------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 593 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+|+.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988865 569999999887654444323334789999999999998887653
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=9.9e-21 Score=203.96 Aligned_cols=277 Identities=6% Similarity=0.049 Sum_probs=193.8
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCee-EE
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNI-LT 621 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~ 621 (945)
..|.+++.++++... .++.|.+||..+++....+..+.. .. .++|+|+++++++++. ++.|++||+.+++. ..
T Consensus 3 ~~~~~~~~~~~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQ---HLRRISFFSTDTLEILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEG---GGTEEEEEETTTCCEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eeEcCCCCEEEEEec---CCCeEEEEeCcccceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence 346666777555543 378999999999999888776544 45 8999999998877775 89999999999887 66
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCC---cEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
.+..+.. +..+++|+|+|++++++..++ .|.+||+.++. ....+.
T Consensus 78 ~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~----------------------------- 125 (331)
T 3u4y_A 78 AIQEGQS--SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIP----------------------------- 125 (331)
T ss_dssp EEEECSS--CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEE-----------------------------
T ss_pred ecccCCC--CccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEE-----------------------------
Confidence 6655433 445599999999999555553 89999997662 111110
Q ss_pred CCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
......+++|+|||++
T Consensus 126 ----------------------------------------------------------------~~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 126 ----------------------------------------------------------------IPYDAVGIAISPNGNG 141 (331)
T ss_dssp ----------------------------------------------------------------CCTTEEEEEECTTSSC
T ss_pred ----------------------------------------------------------------CCCCccceEECCCCCE
Confidence 1123467889999987
Q ss_pred EEEeee-cCe-EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeE
Q 002264 779 LLALGS-NGV-QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKI 854 (945)
Q Consensus 779 l~~~~~-dg~-i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i 854 (945)
+++++. ++. +.+|++... +... +.. ... +. ....+..++|+|||+++++++ ++.|
T Consensus 142 l~~~~~~~~~~i~~~~~~~~-----g~~~--------~~~-~~~----~~---~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDAD-----GVLF--------DTG-QEF----IS---GGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp EEEEEETTTTEEEEEEECTT-----CCEE--------EEE-EEE----EC---SSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEecCCCceEEEEEECCC-----CcEe--------ecC-Ccc----cc---CCCCccceEECCCCCEEEEEeCCCCeE
Confidence 766655 477 999987532 1111 000 000 11 344578999999999665554 6889
Q ss_pred EEEeccCceE---EEEecCCCCCeeEEEeecCCCceEEEe-ecCceEEEEecccceE--EEEecCC----Ccc---eeEE
Q 002264 855 SLFNMMTFKV---MTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDEV--KSKLKGH----QKR---ITGL 921 (945)
Q Consensus 855 ~iwd~~~~~~---~~~~~~h~~~i~~l~~s~~~~~~lasg-~~dg~v~vwd~~~~~~--~~~l~~h----~~~---V~~l 921 (945)
.+||+.+++. +..+.. ...+..++|+| ++++|+++ ..++.|.+||+.+++. +..+..+ ... +..+
T Consensus 201 ~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM 278 (331)
T ss_dssp EEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCE
T ss_pred EEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccce
Confidence 9999999887 777764 46678999999 88866544 4678999999999876 4444322 222 2458
Q ss_pred EecCCcceeeee-cCCceEEEEec
Q 002264 922 AFSTSLNILVSS-GADAQVTLCVE 944 (945)
Q Consensus 922 ~~s~dg~~l~s~-~~Dg~i~vWdl 944 (945)
+|+|||++|+++ ..++.|.+||+
T Consensus 279 ~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 279 ALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEecCCCCcEEEEEe
Confidence 999999988654 55679999997
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2e-20 Score=202.03 Aligned_cols=300 Identities=9% Similarity=0.061 Sum_probs=208.7
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc--
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-- 584 (945)
.++++++.++.|.+||+.+++....+..... .+..++|+|+|+.++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877776654432 4778999999988776653 36799999999998887766432
Q ss_pred --CcceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 585 --~~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
...+..++|+|+++.+++++ .++.|++||+.+++.+..+.... .+.+++|+|+|++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11356689999999999886 57999999999998888776532 57889999999988887 6
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
+.|.+||+.++ +....+..... ...+.|+|+|+.++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~------~~~~~~s~dg~~l~------------------------------------- 189 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSW------EAETYAQPDVLAVW------------------------------------- 189 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTT------TTTTBCCCBCCCCC-------------------------------------
T ss_pred CeEEEEECCCC-cEeeeeecccc------CCCceeCCCccEEe-------------------------------------
Confidence 89999999887 33333322110 11235666665543
Q ss_pred ccCCCCCCc--ccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeee
Q 002264 731 VDDVTDKPK--PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (945)
Q Consensus 731 ~~~~d~~i~--vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (945)
.....+... +|.. ....++.... ......+.+||+
T Consensus 190 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~-~~~~~~v~~~d~--------------- 226 (337)
T 1pby_B 190 NQHESSGVMATPFYT---------------------------ARKDIDPADP-TAYRTGLLTMDL--------------- 226 (337)
T ss_dssp CCCTTTTEEEEEEEE---------------------------EBTTSCTTSG-GGEEEEEEEEET---------------
T ss_pred eeccCCCceeeeeec---------------------------cccccccccc-cccccceEEEeC---------------
Confidence 111111100 0000 0000000000 011124556653
Q ss_pred ccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
.+++.....+.. +...+.+++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|
T Consensus 227 -------~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l 294 (337)
T 1pby_B 227 -------ETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTV 294 (337)
T ss_dssp -------TTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEE
T ss_pred -------CCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEE
Confidence 333322111222 45678899999999999888 78999999999998888764 35688999999 88888
Q ss_pred EEeecCceEEEEecccceEEEEecCCC
Q 002264 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (945)
Q Consensus 889 asg~~dg~v~vwd~~~~~~~~~l~~h~ 915 (945)
++++.++.|++||+.+++.+..+..+.
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 888999999999999999888876553
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.9e-20 Score=201.31 Aligned_cols=306 Identities=8% Similarity=0.083 Sum_probs=200.8
Q ss_pred EEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--CCce--eeEeccc
Q 002264 510 FIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTI--KRTYAGF 583 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~--~~~~~~~ 583 (945)
++++++.|+.|++||++... .......+...+.+++|+|+++++++++. .++.|.+|++. +++. +..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccccC
Confidence 44455789999999996432 22222345557888999999999988874 24899999987 5553 3344432
Q ss_pred cCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCC---CeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~ 658 (945)
. .+..++|+|+++++++++. ++.|.+||+.+ ......+... ..+.+++|+|+|+++++++ .++.|.+|++
T Consensus 84 ~--~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 84 G--SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp S--CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred C--CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 2 5778999999998888775 88899999943 3444444332 3588999999999888887 7899999999
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
.+......... .
T Consensus 159 ~~~~~~~~~~~-------------~------------------------------------------------------- 170 (343)
T 1ri6_A 159 SDDGHLVAQDP-------------A------------------------------------------------------- 170 (343)
T ss_dssp CTTSCEEEEEE-------------E-------------------------------------------------------
T ss_pred cCCCceeeecc-------------c-------------------------------------------------------
Confidence 75211100000 0
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCC
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (945)
..... ....+..++|+|+|+++++++ .++.+.+|++.... +.......+. ..
T Consensus 171 ---------------~~~~~----~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~----g~~~~~~~~~--~~-- 223 (343)
T 1ri6_A 171 ---------------EVTTV----EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH----GNIECVQTLD--MM-- 223 (343)
T ss_dssp ---------------EEECS----TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT----SCCEEEEEEE--CS--
T ss_pred ---------------ccccC----CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC----CcEEEEeecc--cc--
Confidence 00000 123467799999999776665 68999999874311 1110000000 00
Q ss_pred cccccccccCCCcCCceeEEeecCCCceEEec-C-CCeEEEEecc----CceEEEEecCCCCCeeEEEeecCCCceEEEe
Q 002264 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMM----TFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (945)
Q Consensus 818 ~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~-s-d~~i~iwd~~----~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg 891 (945)
..+......+.+++|+|||++|+++ . ++.|.+||+. +.+.+..+..+.. +.+++|+| ++++|+++
T Consensus 224 -------~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~ 294 (343)
T 1ri6_A 224 -------PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAA 294 (343)
T ss_dssp -------CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEE
T ss_pred -------CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEe
Confidence 0000023456789999999887744 3 7889999998 3455556655444 89999999 88877777
Q ss_pred e-cCceEEEEecc--cce--EEEEecCCCcceeEEEecCCcc
Q 002264 892 T-EDSTIHIYNVR--VDE--VKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 892 ~-~dg~v~vwd~~--~~~--~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
+ .++.|.+|++. +++ .+..+... ....+++|.++.+
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 6 68999999654 553 34445432 4566788887643
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.8e-20 Score=201.42 Aligned_cols=273 Identities=14% Similarity=0.155 Sum_probs=190.4
Q ss_pred CCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC-CcEEEE
Q 002264 356 HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLY 433 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d-g~i~vw 433 (945)
+++++++++.|+.|.+|++.. ++... .....|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTL------------------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEE------------------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEE------------------eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345666668899999999963 32211 0012366788999999999999998886 899999
Q ss_pred Ecc--CCcccccceeeccccccEEEEEEecCCCeeEEEE-EeCCCcEEEEe-CCCc---eEEEecCCCCCEEEEEeeecC
Q 002264 434 SYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKE 506 (945)
Q Consensus 434 d~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s-~s~d~~i~vwd-~~~~---~~~~~~~~~~~v~~~~~~~~~ 506 (945)
+++ +++. .....+..+. .+.+++|+|+++ ++++ +..++.|.+|| ..+. .+..+.. ...+.+++|+|
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-- 138 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-- 138 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--
Confidence 998 5432 2222343333 789999999999 5544 44588999999 4332 3334443 34578888876
Q ss_pred CccEEEEEE-cCCeEEEEEccC-CCeeE----EecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC--Cce-
Q 002264 507 NIQFIFSTA-IDGKIKAWLYDT-MGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI- 576 (945)
Q Consensus 507 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--~~~- 576 (945)
+++++++++ .++.|.+||+.+ +.... .... ....+..++|+|+++++++++. .++.+.+||+.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 557777777 899999999987 43321 2222 3447889999999998877653 378999999953 433
Q ss_pred -eeEecccc-----CcceEEEEEcCCCCEEEEEE-CCCcEEEEECC--CC--eeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 577 -KRTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--NV--NILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 577 -~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
...+.... ...+..++|+|+++++++++ .++.|.+|++. ++ +.+..+.... .+.+++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22222111 12355799999999888655 78999999998 33 3444444332 378999999999988
Q ss_pred EEE-CCCcEEEEECC
Q 002264 646 VTT-ADNGFKILANA 659 (945)
Q Consensus 646 ~~~-~dg~i~iw~~~ 659 (945)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=8e-21 Score=200.84 Aligned_cols=254 Identities=9% Similarity=0.031 Sum_probs=189.9
Q ss_pred CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
.++.|++||+.+++..... .+.. .+.+++|+|+++++++++ ++.|++||+.+ ++.......+. ...+.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW-QTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-TICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE-EESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-CCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeec-cCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-cccccceEECCC
Confidence 4889999999998876444 3444 789999999999999987 78999999999 87766554432 246899999999
Q ss_pred CCEEEEEEC--CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 641 GNLLAVTTA--DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 641 g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
|++|++++. ++...||.+........
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~---------------------------------------------------- 123 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPR---------------------------------------------------- 123 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCE----------------------------------------------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceE----------------------------------------------------
Confidence 999999983 45566665432100000
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE-EeeecCeEEEEeecCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL-ALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~~~dg~i~lw~~~~~~ 797 (945)
.+ . ....+..++|+|||+.++ ++..++.+++|++...
T Consensus 124 -----------------------------------~~--~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~- 161 (297)
T 2ojh_A 124 -----------------------------------LM--T----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID- 161 (297)
T ss_dssp -----------------------------------EC--C----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT-
T ss_pred -----------------------------------Ee--e----cCCCccceEECCCCCEEEEEECCCCceEEEEEECC-
Confidence 00 0 112367789999999887 6667899999986421
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc-CceEEEEecCCCCC
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM-TFKVMTTFMSPPPA 874 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~-~~~~~~~~~~h~~~ 874 (945)
++.... +.. +...+.+++|+|||+++++++ ++.++||++. .+.....+..|...
T Consensus 162 -------------------~~~~~~--~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 218 (297)
T 2ojh_A 162 -------------------SGVETR--LTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG 218 (297)
T ss_dssp -------------------TCCEEE--CCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE
T ss_pred -------------------CCcceE--ccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc
Confidence 121111 222 567899999999999887664 6789999886 55666788888888
Q ss_pred eeEEEeecCCCceEEEeecC-----------ceEEEEecccceE--EEEecCCCcceeEEEecCCcceeeeecCCc
Q 002264 875 STFLAFHPQDNNIIAIGTED-----------STIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 875 i~~l~~s~~~~~~lasg~~d-----------g~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
+.+++|+| ++++|++++.+ +.|++||+.+++. +..+.+|...+.+++|+|||++|++++.|.
T Consensus 219 ~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 219 DWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999 89888888766 5799999998865 445557889999999999999999887664
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.1e-19 Score=197.60 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=208.6
Q ss_pred CccEEEEEEcCCCCEEEEEEC-------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFT-------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~-------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
...+..++|+|+|+++++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. +++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 346889999999999988874 56899999999876653 32 2345788999999995 456667789999
Q ss_pred EEe-CCCceEEEecCCCCC---------EEEEEeeecCCccEEEEEE--cCCeEEEEEccCCCeeEEecCCCCeEEEEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAP---------VYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 546 (945)
+|| .+++.+..+..+... +.+++|++ +++.+++++ .++.|.+||..+++....+......+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999 788888777654432 68888877 456666655 4789999999988888777655666788999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc---cCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEE
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF---RKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTS 622 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 622 (945)
+|++++++++.. ++.|.+||..+++....+... ....+..++|+|+++.+++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999988864 789999999999988777642 1224677999999998887775 59999999999999888
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
+.... ...++|+|+|+++++++ .++.|.+||..++ +....+... .....++|+|+|+.++++.
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~------~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP------THPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC------SEEEEEEECTTSCEEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC------CCCCeEEEcCCCCEEEEEE
Confidence 87643 26799999999776666 6899999999887 444444322 2367899999999776543
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=5.7e-20 Score=198.48 Aligned_cols=267 Identities=7% Similarity=0.004 Sum_probs=197.8
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc-cEEEEEEcCCCCEEEE-EECCCcEEEEEcc
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-SVSRVAWSPDGNYVGV-AFTKHLIQLYSYA 436 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~i~~s~~g~~las-~~~dg~i~vwd~~ 436 (945)
++++++.++.|.+||..+++.+.. +..++.. .+.+++|+|+|+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 588999999999999998876532 0112222 4788999999987654 4557899999999
Q ss_pred CCcccccceeecc---ccccEEEEEEecCCCeeEEEEEe------------CCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 437 GSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 437 ~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s------------~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
+++.+..+. ... |...+.+++|+|+|+ ++++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 887654321 111 233678899999999 566664 579999999 77777766654 4457778
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc----------------
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS---------------- 564 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~---------------- 564 (945)
+|+| ++++++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 8876 55777776 68999999998877666554431 012368899987765542 122
Q ss_pred -------eEEEEeCCCCceee-EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 565 -------FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 565 -------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
.|.+||+.+++... .+..+. ..+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999987752 222222 256789999999999988 7899999999999888876543 578999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCC
Q 002264 637 FSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|+|+++++++.++.|.+||+.++
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC
Confidence 9999999999988999999999887
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=5.2e-20 Score=214.86 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=193.3
Q ss_pred CcEEEEEEeCCCCeEEEEEeC-cCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccEEEEEEcCCCCEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~g~~la 422 (945)
.+|++++|+|||++ ||+++. ||++.||++.+++... +..|. ..+.+++|||| +.++
T Consensus 22 ~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 22 VEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp SCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred cchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEE
Confidence 38999999999996 666655 9999999986654321 33444 68999999999 7788
Q ss_pred EEEC---CCcEEEEEccC--CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 423 VAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 423 s~~~---dg~i~vwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+++. +....+|.++. ..... .+..+ ..+...+|+|+|+.+++++++.++ +.+|| .+++... +..+..
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~-l~~~~~- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRE-LARLPG- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEE-EEEESS-
T ss_pred EeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEE-eecCCC-
Confidence 7775 45566766543 22112 12222 234467999999865666666555 45999 6665443 333333
Q ss_pred EEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 497 VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.
T Consensus 153 -~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 7778877 66899988877 78999998877654 56677778999999999999995442 223489999999
Q ss_pred CCceeeEeccccCcceEEEE--------EcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 573 EGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
+++.. .+.++.. .+..+. |+|+|..+++++.||.+++|++ ++.... . ...+.+++|+ +|+++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEE
Confidence 98877 6655543 444455 9999988888999999999999 665441 1 2368899999 99999
Q ss_pred EEEECCCc---EEEEECC
Q 002264 645 AVTTADNG---FKILANA 659 (945)
Q Consensus 645 ~~~~~dg~---i~iw~~~ 659 (945)
++++.+.+ +.+|+..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 98887744 5666554
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=8.4e-19 Score=190.15 Aligned_cols=285 Identities=10% Similarity=0.115 Sum_probs=181.6
Q ss_pred EEEEeecCCCCceEEEEe--CCCCceeeE-eccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCee--EEEee
Q 002264 553 LFSCGTSKDGDSFLVEWN--ESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNI--LTSTD 624 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~--~~~~~ 624 (945)
+++++.....++.|++|+ ..+++.... ...+. .....++|+|+|+ +++++. ++.|++|++.++.. +..+.
T Consensus 5 ~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~-~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 5 ILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT-QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC-SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc-CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 444443222344555555 455655432 22222 2466799999998 666554 68999999987764 33322
Q ss_pred cCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 625 AEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
.+. ..+..++|+|||++|++++ .++.|.+|++...... ..+ ..+. ..+.
T Consensus 83 ~~~--~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-~~~------------~~~~--~~~~------------- 132 (347)
T 3hfq_A 83 APG--TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-TLT------------DTVQ--HSGH------------- 132 (347)
T ss_dssp EES--CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE-EEE------------EEEE--CCCC-------------
T ss_pred cCC--CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe-eec------------ceee--cCCC-------------
Confidence 232 3678999999999999888 6789999998532110 000 0000 0000
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
+ +. . ......+.+++|+|||+.+++..
T Consensus 133 --------------------------------~------------p~------~---~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 133 --------------------------------G------------PR------P---EQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp --------------------------------C------------SS------T---TCSSCCEEEEEECTTSCEEEEET
T ss_pred --------------------------------C------------CC------c---cccCCCceEEEECCCCcEEEEeC
Confidence 0 00 0 00334678899999999555555
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccC
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT 861 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~ 861 (945)
.++.|.+|++.. .+........ ... ....+..++|+|||+++++++ ++.|.+|++..
T Consensus 160 ~~~~v~~~~~~~-----~g~~~~~~~~-------------~~~---~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 160 GSDKVYVYNVSD-----AGQLSEQSVL-------------TME---AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp TTTEEEEEEECT-----TSCEEEEEEE-------------ECC---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEEECC-----CCcEEEeeeE-------------EcC---CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 588999998752 1111110000 000 223567899999999776654 67899999874
Q ss_pred --ceE--EEEecCCC------CCeeEEEeecCCCceE-EEeecCceEEEEeccc-c--eEEEEecCCCcceeEEEecCCc
Q 002264 862 --FKV--MTTFMSPP------PASTFLAFHPQDNNII-AIGTEDSTIHIYNVRV-D--EVKSKLKGHQKRITGLAFSTSL 927 (945)
Q Consensus 862 --~~~--~~~~~~h~------~~i~~l~~s~~~~~~l-asg~~dg~v~vwd~~~-~--~~~~~l~~h~~~V~~l~~s~dg 927 (945)
++. +..+.... ..+..++|+| +|++| ++...++.|.+|++.. + +.+..+..+...+.+++|+|||
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp TTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred CCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence 443 23333222 3488999999 88866 5556689999999972 2 5666677777789999999999
Q ss_pred ceeeeecC-CceEEEEec
Q 002264 928 NILVSSGA-DAQVTLCVE 944 (945)
Q Consensus 928 ~~l~s~~~-Dg~i~vWdl 944 (945)
++|++++. ++.|.+|++
T Consensus 298 ~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEcCCCcEEEEEE
Confidence 98888765 489999965
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=6.1e-19 Score=195.90 Aligned_cols=259 Identities=12% Similarity=0.086 Sum_probs=175.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE--
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-- 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-- 422 (945)
..+.++++++++. ++++|+.++ |+||+........... .+.. ............|...|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 588888887 8998864321100000 0000 000000011223667899999999999999
Q ss_pred --EEECCCcEEEEEccCC--------cccccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 423 --VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 423 --s~~~dg~i~vwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
+|+.|+.|++||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++|| .++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999765 222233456789999999999998 56 899999999999999 777777677
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------CCeEEEEEEcCCCCEEEEEeecC---
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK--- 560 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~--- 560 (945)
.+|...|.+++|+| +|++|++|+.||.|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 78999999999987 56899999999999999988 4444444333 22799999999888877655421
Q ss_pred CCCceEEEEeCCCCc-----eeeEec-------cccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 002264 561 DGDSFLVEWNESEGT-----IKRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD 615 (945)
Q Consensus 561 d~~~~i~iwd~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 615 (945)
+....+++|++...+ ....+. +... ....+..-++.+++++++ ..+.|.++...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 111348999998642 111111 1111 122233336667777765 44456666543
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=223.18 Aligned_cols=310 Identities=11% Similarity=0.075 Sum_probs=208.3
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc---cEEEEEEcCCCCEEEEEE
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~s~~g~~las~~ 425 (945)
.++|+|||+ +++++ .|++|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 56655 59999999999887542 1223322 488999999999999987
Q ss_pred C---------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cCCC
Q 002264 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (945)
Q Consensus 426 ~---------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~~~ 494 (945)
. ++.|++||+++++.+... .+ ...+.+++|||||+ .|+.++ |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998752111 12 24688999999999 677665 78999999 666654322 2333
Q ss_pred CCE-----------------EEEEeeecCCccEEEEEEcCC----------------------------------eEEEE
Q 002264 495 APV-----------------YSICPHHKENIQFIFSTAIDG----------------------------------KIKAW 523 (945)
Q Consensus 495 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 523 (945)
..| .+++|+| ||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 3788876 678999887652 78899
Q ss_pred EccCCCee--EE------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe----CCCCceeeEe----ccccCcc
Q 002264 524 LYDTMGSR--VD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN----ESEGTIKRTY----AGFRKKS 587 (945)
Q Consensus 524 d~~~~~~~--~~------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 587 (945)
|+.++... .. +..+...+..++|+||++.+++.....++...|.+|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876642 12 2346668899999999876666443223345699999 8887766555 23333 3
Q ss_pred eE-----EEEEcCCCCEEEE--EECCC--cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcE
Q 002264 588 NG-----VVQFDTTQNHFLA--VGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGF 653 (945)
Q Consensus 588 ~~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i 653 (945)
+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999986655 33455 577778877763 344332 2256777777 88888777665 788
Q ss_pred EEEECCC--CccccccccCCccccccCcceeeeecccccceec
Q 002264 654 KILANAI--GLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 654 ~iw~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
++|.+.. +....+.+... .......+..+.|+|+|+.++.
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCH-LRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp EEEEEECSSSSCCEEESSTT-TTTTTBCBEEEEECGGGSSEEE
T ss_pred EEEEEeCCCCCCCceeccCc-cCCCCCceEEEEECCCCCEEEE
Confidence 8998754 21111111110 0001223567899999998774
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.2e-19 Score=214.06 Aligned_cols=236 Identities=10% Similarity=0.031 Sum_probs=159.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccc---cEEEEEEecCCCeeEEEEEeC---------CCcEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGD---------DKLIK 478 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~~~l~s~s~---------d~~i~ 478 (945)
+++|+|||++++++ .|+.|++||+.+++... .+.+|.. .+.+++|||||+ +|++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE---EEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEE
Confidence 78999999766554 69999999999987554 3334433 489999999999 6776665 78999
Q ss_pred EEe-CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCeE-------------
Q 002264 479 VWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWC------------- 541 (945)
Q Consensus 479 vwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i------------- 541 (945)
+|| .+++.+ ..+ ...+..++|+| ||+.|+++. ++.|++||+.++...... ..+...+
T Consensus 94 ~~d~~~g~~~~~~~l---~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL---PRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEETTTTEECCSSCC---CSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred EEECCCCccccceec---CcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 999 555442 222 34678889877 667888875 789999999877654322 1211112
Q ss_pred ----EEEEEcCCCCEEEEEeecCC------------------------------CCceEEEEeCCCCcee---e-----E
Q 002264 542 ----TTMLYSADGSRLFSCGTSKD------------------------------GDSFLVEWNESEGTIK---R-----T 579 (945)
Q Consensus 542 ----~~~~~s~~~~~l~~~~~~~d------------------------------~~~~i~iwd~~~~~~~---~-----~ 579 (945)
.+++|+|||+.|++++.+.. ....|++||+.+++.. . .
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 48999999999999875321 1227899999987753 1 1
Q ss_pred eccccCcceEEEEEcCCCCEEEEEECC----CcEEEEE----CCCCeeEEEee--cCCCCCCcc-----EEEEcCCCCEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWD----MDNVNILTSTD--AEGGLPNLP-----RLRFSKEGNLL 644 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~--~~~~~~~v~-----~v~~sp~g~~l 644 (945)
+.++.. .+..++|+|+++.+++.... ..|++|| ..+++....+. ...+...+. .++|+|||+.+
T Consensus 248 ~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 248 IASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred CCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 223333 67889999998766664433 2488999 87777654442 012222455 78999999966
Q ss_pred EE--EECCCc--EEEEECC
Q 002264 645 AV--TTADNG--FKILANA 659 (945)
Q Consensus 645 ~~--~~~dg~--i~iw~~~ 659 (945)
+. ...+|. |.+|++.
T Consensus 327 ~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEEEECTTSCEEEEEESSC
T ss_pred EEEEEccCCceEEEEEECC
Confidence 54 445554 4444443
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=8.2e-19 Score=190.41 Aligned_cols=294 Identities=9% Similarity=0.009 Sum_probs=195.8
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
.++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|+.++++.. .++.|.+||+.+++....+....
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEccc
Confidence 356889999999999999999887776666543 14678999999997776653 47899999999998887765432
Q ss_pred -----CcceEEEEEcCCCCEEEEEECC------------CcEEEEECCCCee---EEEeecCCCCCCccEEEEcCCCCEE
Q 002264 585 -----KKSNGVVQFDTTQNHFLAVGED------------SQIKFWDMDNVNI---LTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 585 -----~~~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
...+..++|+|+|+++++++.+ +.|.+||+.+++. +..+..+ ..+.+++|+|+|+ +
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-L 161 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-E
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-E
Confidence 2236678999999999998865 8999999988543 3333332 2578999999999 5
Q ss_pred EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccC
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (945)
++++ +.|.+||+.++. ....+........ ..+.+
T Consensus 162 ~~~~--~~i~~~d~~~~~-~~~~~~~~~~~~~------~~~~~------------------------------------- 195 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGK-YTVALPLRNWNRK------GYSAP------------------------------------- 195 (349)
T ss_dssp EEES--SSEEEECTTTCC-EEEEECSTTCCCT------TBCCC-------------------------------------
T ss_pred EEcc--CcEEEEeCCCCc-eeccccccccCCc------cccCc-------------------------------------
Confidence 5554 349999998773 2222211100000 00000
Q ss_pred CCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE-----------EeeecCeEEEEee
Q 002264 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL-----------ALGSNGVQKLWKW 793 (945)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-----------~~~~dg~i~lw~~ 793 (945)
..+.+|.... ... .......+++++++.... .....+.+++|++
T Consensus 196 -----------~~~~~~~~~~---~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 196 -----------DVLYFWPHQS---PRH-----------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp -----------BCCCCCCCCC---TTC-----------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred -----------cceeeecCCC---cce-----------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 1112222211 000 001223455665543221 1112233333332
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC-CCceEEecCCCeEEEEeccCceEEEEecCCC
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~-dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~ 872 (945)
.. +...+.+++|+| ||++++++ ++.|.+||+.+++.+..+.. .
T Consensus 251 --------------------------------~~--~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~ 294 (349)
T 1jmx_B 251 --------------------------------AD--LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-D 294 (349)
T ss_dssp --------------------------------EE--CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-S
T ss_pred --------------------------------cc--CCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-C
Confidence 11 345678999999 99999988 88999999999998888763 3
Q ss_pred CCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCC
Q 002264 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 914 (945)
..+.+++|+| ++++|++++.++.|++||+.+++.+..+..+
T Consensus 295 ~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 4578999999 8888888888999999999999988877644
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=3.2e-18 Score=205.18 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=181.9
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-----ccEEEEEEcCCCCE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-----ISVSRVAWSPDGNY 420 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~i~~s~~g~~ 420 (945)
....++|+|||+ +++++ ||+|++||+.+++... ++.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCCE
Confidence 466899999998 57876 9999999999987542 133332 23345899999999
Q ss_pred EEEEECC---------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-
Q 002264 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (945)
Q Consensus 421 las~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~- 489 (945)
|+.++.+ +.+.+||+.+++.. .+..|.+.+...+|||||+ .|+.++ |+.|++|| ..+.....
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9998876 56779999998754 3556788899999999999 566664 78999999 55554321
Q ss_pred ecCCCCCE-----------------EEEEeeecCCccEEEEEEcCCe-EEEEEccCCCeeEEecCCCCeEEEEEEcCCCC
Q 002264 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 490 ~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
..++...+ ..+.|+| ||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 2367766 7788888876554 8888764221110 1233566777777664
Q ss_pred EEEEEeecCCCCceEEEEeCCC---Cc--eeeEecc-----ccCcceEEEEEcCCCCEEEEEEC----CCcEEEEECCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESE---GT--IKRTYAG-----FRKKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDNV 617 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~---~~--~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 617 (945)
.. ....|++||+.+ ++ ....+.. .+...+..++|+|+|+.++.... +..|++||+.++
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 31 244699999998 73 2222322 12336888999999987766542 347999999988
Q ss_pred e----eE--EEeecCCCCCCcc-----EEEEcCCCCEEE-EEEC-CC--cEEEEECCCC
Q 002264 618 N----IL--TSTDAEGGLPNLP-----RLRFSKEGNLLA-VTTA-DN--GFKILANAIG 661 (945)
Q Consensus 618 ~----~~--~~~~~~~~~~~v~-----~v~~sp~g~~l~-~~~~-dg--~i~iw~~~~~ 661 (945)
+ +. ..+....+...|. .++|+|||+.++ ..+. +| .|.+|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 22 1110011222333 789999999887 6654 33 4777777644
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=3.9e-19 Score=207.50 Aligned_cols=261 Identities=13% Similarity=0.167 Sum_probs=192.7
Q ss_pred CccEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeC---CCcEEEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~---d~~i~vw 480 (945)
..+|.+++|+|||++||+++. ||+++||++++++.. .+..|. ..+.+++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776543 344455 68999999999 5 6776664 5556676
Q ss_pred e--C--CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 481 d--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
. . .+... .+.... .+...+|+|++++..+++++.++ +.+||+.+++.......+. .+++|+|||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 55554 444332 34466888876655555555555 4599998876555443333 788999999999988
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC--cEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChhh
Confidence 764333378999999988765 4555544 678899999999999888888 8999999998877 554433 35666
Q ss_pred EE--------EcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 635 LR--------FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 635 v~--------~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++ |+|||.++++++.|+.+++|++ + +..... .+.+.+++|+ +|+.++++.
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~~~--------~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVEAP--------QGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEECCC--------SSEEEEEEEE-TTEEEEEEE
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-CeeccC--------CCceEEEEec-CCEEEEEEc
Confidence 77 9999999999999999999999 4 322211 2357788999 888876543
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1e-17 Score=182.68 Aligned_cols=300 Identities=9% Similarity=0.057 Sum_probs=186.9
Q ss_pred CCCEEEEEeecCCCCceEEEEeC--CCCceeeEeccccCcceEEEEEcCCCCEEEEEECC----CcEEEEECCC--CeeE
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDN--VNIL 620 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~~ 620 (945)
...++++++.....++.|++|++ .+++....... .......++|+|++++|++++.+ +.|.+|++.. +...
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34456666554444667888865 55655433322 23356679999999999999875 7999998765 5443
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~ 699 (945)
.......+......+++ +++++++++ .++.|.+|++...... ..... .+.. .|.
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~-----------~~~~--~g~--------- 145 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL-LPASD-----------VIEF--KGS--------- 145 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB-CSCSE-----------EEEC--CCC---------
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC-cccce-----------eEEc--cCC---------
Confidence 32222222224566777 888888776 5789999999754211 10000 0000 000
Q ss_pred CccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeE
Q 002264 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (945)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 779 (945)
+ .... ..+...+.+++|+|||+++
T Consensus 146 ------------------------------------~------------~~~~--------~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 146 ------------------------------------G------------PDKE--------RQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp ------------------------------------C------------SCTT--------TCSSCCEEEEEECTTSSEE
T ss_pred ------------------------------------C------------CCcc--------ccCCCcceEEEECCCCCEE
Confidence 0 0000 0033457889999999977
Q ss_pred EEeee-cCeEEEEeecCCCCCCCCc-eeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEE
Q 002264 780 LALGS-NGVQKLWKWHRNEQNPSGK-ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKIS 855 (945)
Q Consensus 780 ~~~~~-dg~i~lw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~ 855 (945)
++++. ++.+.+|++.........+ .... +........ +...+..++|+|||+++++++ ++.|.
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---PGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---TTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---CCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 76664 7899999875422100000 0000 000000011 345577899999999887765 68899
Q ss_pred EEeccCceE--EEEec---CCCCCeeEEEeecCCCceEEEeec--CceEEEEecc--cce--EEEEecCCCcceeEEEec
Q 002264 856 LFNMMTFKV--MTTFM---SPPPASTFLAFHPQDNNIIAIGTE--DSTIHIYNVR--VDE--VKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 856 iwd~~~~~~--~~~~~---~h~~~i~~l~~s~~~~~~lasg~~--dg~v~vwd~~--~~~--~~~~l~~h~~~V~~l~~s 924 (945)
+|++.+++. +..+. .+...+.+++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+
T Consensus 237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 999987754 23332 3344578999999 8888866655 4899999996 454 4555554 5678899999
Q ss_pred CCcceeeeec-CCceEEEEecC
Q 002264 925 TSLNILVSSG-ADAQVTLCVEH 945 (945)
Q Consensus 925 ~dg~~l~s~~-~Dg~i~vWdl~ 945 (945)
|||++|++++ .++.|.+|+++
T Consensus 315 pdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 315 PNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEE
Confidence 9999888877 67899998653
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=3.1e-18 Score=185.63 Aligned_cols=269 Identities=14% Similarity=0.119 Sum_probs=184.1
Q ss_pred cccCCCCCcce--EEeecCCCcEEEEEEeCCCCeEEEEEeC--cCcEEEEEcCCCCcccccccccccccccCcccccccc
Q 002264 327 TWSLDDLPRTV--AVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (945)
Q Consensus 327 ~~~~~~~~~~~--~~~~~h~~~V~~v~fsp~g~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (945)
+|.++...+.. .....+...+..++|+|||+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 55555433333 23455678899999999998 6666643 78999999976653210 112
Q ss_pred cCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCcccccceeecc---------ccccEEEEEEecCCCeeEEEEEe
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~~~~~~~~~~~~~---------h~~~v~~l~~s~~~~~~~l~s~s 472 (945)
..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|+|+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 34567788999999999999888 678999999964333332222211 123488999999999 788888
Q ss_pred CCCcEEEEe-C-CCceE--EEecCC-CCCEEEEEeeecCCccEEEE-EEcCCeEEEEEccC--CCee--EEecCCC----
Q 002264 473 DDKLIKVWE-L-SGRKL--FNFEGH-EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDT--MGSR--VDYDAPG---- 538 (945)
Q Consensus 473 ~d~~i~vwd-~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~--~~~~--~~~~~~~---- 538 (945)
.++.|.+|+ . +++.. ..+..+ ...+..++|+| +|+++++ +..++.|.+|+++. +... ..+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 5 45432 222222 33577889877 5675555 56788999999885 3221 1222211
Q ss_pred --CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-C--ceeeEeccccCcceEEEEEcCCCCEEEEEEC-CCcEEEE
Q 002264 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-G--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (945)
Q Consensus 539 --~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw 612 (945)
..+..++|+|||++|+++.. +++.|.+|++.. + +.+..+..+.. .+..++|+|+|++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 45889999999998866554 478999999873 2 44444544333 5678999999999998885 4899999
Q ss_pred --ECCCCeeEE
Q 002264 613 --DMDNVNILT 621 (945)
Q Consensus 613 --d~~~~~~~~ 621 (945)
|..+++...
T Consensus 314 ~~d~~tg~l~~ 324 (347)
T 3hfq_A 314 ARDLTSGKLSL 324 (347)
T ss_dssp EECTTTCCEEE
T ss_pred EEeCCCCeEEe
Confidence 555666553
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=6.1e-18 Score=186.58 Aligned_cols=296 Identities=11% Similarity=0.005 Sum_probs=193.2
Q ss_pred eEEeecCCCcEEE-----EEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCCccE
Q 002264 337 VAVSLHQGSTVIS-----MDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (945)
Q Consensus 337 ~~~~~~h~~~V~~-----v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (945)
......|...+.. .+|||||++|++++..+| .|.+||+.+++... +..++...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCc
Confidence 3344446666666 899999997444444367 48888988876542 234455555
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEE--EecCCCeeEEEEE----------------
Q 002264 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTC---------------- 471 (945)
Q Consensus 410 ~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~~~l~s~---------------- 471 (945)
..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... +++++. +++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 577899999999999999999999999987544 2334445454444 489998 55532
Q ss_pred ------eCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCC
Q 002264 472 ------GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 472 ------s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~ 538 (945)
+.+..|.+|| .+++ ...+..+...+..++|+|. +|+.|+.+..+ ..|.++|....... .+..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred hhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence 2456899999 5554 4555567777889998771 34677776653 36777776654433 333333
Q ss_pred --CeEEEEEEcCCCCEEEEEeecCCC-CceEEEEeCCCCceee--EeccccC--cceEEEEEcCCCCEEEEE--------
Q 002264 539 --HWCTTMLYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV-------- 603 (945)
Q Consensus 539 --~~i~~~~~s~~~~~l~~~~~~~d~-~~~i~iwd~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~~~-------- 603 (945)
..+..+.|+|||+.|+..+..... +..|++||+.+++... .+.++.. .......|+|+|+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 357889999999988776642211 2349999999887543 2322100 001113689999888764
Q ss_pred -ECCCcEEEEECCCCeeEEEeecCCCCC--------CccEEEEcCCCCEEEEEEC-CCcEEEEECC
Q 002264 604 -GEDSQIKFWDMDNVNILTSTDAEGGLP--------NLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (945)
Q Consensus 604 -~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~ 659 (945)
..+..|++||+.+++............ .+.+++|+|||+.|+..+. +|...||.+.
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456689999999887654433322100 3678899999998887764 6666666553
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=2.1e-18 Score=187.18 Aligned_cols=275 Identities=11% Similarity=0.052 Sum_probs=185.2
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC-CccEEEEEEcCCCCEEEE-EEC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGV-AFT 426 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~s~~g~~las-~~~ 426 (945)
.+++++++. ++++++.+++|.+||..+++.+.. +..+ ...+..++|+|+|+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788776 689999999999999998876532 1112 125778999999997654 456
Q ss_pred CCcEEEEEccCCcccccceeeccc-----cccEEEEEEecCCCeeEEEEEeCC------------CcEEEEe-CCCc---
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWE-LSGR--- 485 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h-----~~~v~~l~~s~~~~~~~l~s~s~d------------~~i~vwd-~~~~--- 485 (945)
++.|.+||+.+++...... + .+ ...+.+++|+|+|+ ++++++.+ +.|.+|| .+++
T Consensus 64 ~~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 8899999999887654221 1 12 23478899999999 66766654 8999999 5533
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------------------C---eE
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------------H---WC 541 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~i 541 (945)
.+..+.. ...+.+++|++ +|+ +++++ +.|.+||+.+++....+.... . ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 2333433 34578888876 556 55544 349999998887766554332 0 33
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
..+++++++........ ....+..+|..+++....-.......+..++++| ++++++++ ++.|++||+.+++.+
T Consensus 214 ~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred eeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 45666665432211100 0112223555554432211111223577899999 99999888 889999999999988
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+.... .+.+++|+|+|++|++++.++.|.+||..++
T Consensus 289 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 289 KAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 8876533 4689999999999988888999999999887
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=5.5e-17 Score=176.84 Aligned_cols=271 Identities=14% Similarity=0.168 Sum_probs=181.8
Q ss_pred EEEEEe----CcCcEEEEEcC--CCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC----C
Q 002264 359 LLLVGS----SNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (945)
Q Consensus 359 llasgs----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d----g 428 (945)
.+++|+ .++.|.+|++. +++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 456664 35689999774 4443210 112 56677889999999999999886 7
Q ss_pred cEEEEEccCC-cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE------EecC--------
Q 002264 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF------NFEG-------- 492 (945)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~------~~~~-------- 492 (945)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|+ .....+. ...+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998763 223333334445566778888 7773 344444688999999 4332221 1111
Q ss_pred CCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEccCCCe------e-------EEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 493 HEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS------R-------VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
+...+.+++|+| +|+++++++ .++.|.+|+++.... . ............++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357888877 567665554 589999999886542 1 122233456789999999998887763
Q ss_pred cCCCCceEEEEeCCCCcee--eEecccc--CcceEEEEEcCCCCEEEEEEC--CCcEEEEECC--CCe--eEEEeecCCC
Q 002264 559 SKDGDSFLVEWNESEGTIK--RTYAGFR--KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMD--NVN--ILTSTDAEGG 628 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 628 (945)
.++.|.+||+.+++.. ..+.... ......++|+|+|++|+++.. ++.|.+|++. ++. .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 3788999999877542 2222211 123568999999999988775 4899999986 455 3334433 2
Q ss_pred CCCccEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 002264 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~ 659 (945)
..+.+++|+|||++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 3678999999999998888 57899997654
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=6.6e-18 Score=186.34 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=188.1
Q ss_pred ccCCCccEEE-----EEEcCCCCEEEEEEC-CC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC
Q 002264 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (945)
Q Consensus 402 ~~~h~~~V~~-----i~~s~~g~~las~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~ 473 (945)
+..|...... .+|||||++|+.++. +| .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4556555555 899999999999887 66 48888998876544 3345555566788999999 7888888
Q ss_pred CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE----------------------cCCeEEEEEccCCCe
Q 002264 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------------------IDGKIKAWLYDTMGS 530 (945)
Q Consensus 474 d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 530 (945)
++.|++|| .+++....+..+...+....|..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 7777666666666656555554456777776432 346799999988765
Q ss_pred eEEecCCCCeEEEEEEcC-CCCEEEEEeecCC--CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-C
Q 002264 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-D 606 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d 606 (945)
.. +..+...+..+.|+| ||+.|+.+..... ....|.++|...+.............+....|+|+|+.|+..+. +
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 44 334455688999999 9999988764211 14478889987665443333222224667899999998766542 2
Q ss_pred C----cEEEEECCCCeeEEEeecCCCC---CCccEEEEcCCCCEEEEE---------ECCCcEEEEECCCCccccccccC
Q 002264 607 S----QIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 607 g----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+ .|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++.. ..+..
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~ 337 (388)
T 3pe7_A 260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVAR 337 (388)
T ss_dssp TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEE
T ss_pred CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEecc
Confidence 2 3999999998754433322200 012334799999988854 4466899999988732 22222
Q ss_pred Cccc------cccCcceeeeeccccccee
Q 002264 671 PPFE------ALRTPIESVALKVSASSAV 693 (945)
Q Consensus 671 ~~~~------~~~~~i~~v~~s~~g~~l~ 693 (945)
+... .....+..++|+|||+.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEE
Confidence 2110 0001256678899988775
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=1.9e-17 Score=198.51 Aligned_cols=366 Identities=9% Similarity=0.008 Sum_probs=222.0
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE-----EEEEeeecCCccEEEEEEcC--------
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-----YSICPHHKENIQFIFSTAID-------- 517 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~s~~~d-------- 517 (945)
....+++|+|||+ +++++ |++|++|| .++++...+.+|.... ..+.|+| ||++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEcc
Confidence 3466899999998 77876 99999999 8888877777776432 2355655 77899988876
Q ss_pred -CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec-cccC----------
Q 002264 518 -GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRK---------- 585 (945)
Q Consensus 518 -g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-~~~~---------- 585 (945)
+.+.+||+.+++.. .+..+...+..++|||||+.|+.+. ++.|++||+.+++..+... ++..
T Consensus 91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-----~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-----CCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 56679999887654 3455566799999999999999885 7789999998887554322 2221
Q ss_pred ------cceEEEEEcCCCCEEEEEECC-CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 586 ------KSNGVVQFDTTQNHFLAVGED-SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 586 ------~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.....+.|+|||+.|+.++.| +.+.+|++...... ..+...+..+.+.+.|.. .....|++||+
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~-----~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~ 235 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE-----SLQYPKTVRVPYPKAGAV----NPTVKFFVVNT 235 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----TCSSCEEEEEECCBTTSC----CCEEEEEEEET
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----CCCCCcceeecCCCCcCc----CCeeEEEEEEC
Confidence 011347899999999888744 44777775321100 012234556666666542 11236888888
Q ss_pred CC---Ccc-ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCC
Q 002264 659 AI---GLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (945)
Q Consensus 659 ~~---~~~-~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (945)
.+ +.. ....+..
T Consensus 236 ~~~~~~~~~~~~~l~~---------------------------------------------------------------- 251 (740)
T 4a5s_A 236 DSLSSVTNATSIQITA---------------------------------------------------------------- 251 (740)
T ss_dssp TSCCSSSCCCEEEECC----------------------------------------------------------------
T ss_pred CCCCCCCcceEEEecC----------------------------------------------------------------
Confidence 76 410 0000000
Q ss_pred CCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee----cCeEEEEeecCCCCCCCCceeeeecc
Q 002264 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS----NGVQKLWKWHRNEQNPSGKATASAVP 810 (945)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~----dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (945)
+. .+ .++...+..++|+|||+.++.... +..|.+||+...... .
T Consensus 252 --------------~~-----~~---~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~----~------ 299 (740)
T 4a5s_A 252 --------------PA-----SM---LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR----W------ 299 (740)
T ss_dssp --------------CH-----HH---HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE----E------
T ss_pred --------------Cc-----cC---CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc----c------
Confidence 00 00 014556788999999996665543 236777776432200 0
Q ss_pred ccccCCCcccccccccCCCcCCcee-----EEeecCCCceEE-ecC--CC--eEEEEeccCceEEEEecCCCCCeeEEEe
Q 002264 811 QHWLPSSGLLMANDVAGVNLEEAVP-----CIALSKNDSYVM-SAT--GG--KISLFNMMTFKVMTTFMSPPPASTFLAF 880 (945)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~~~~~~i~-----~l~~s~dg~~la-~~s--d~--~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (945)
.. .... .+....+...+. .++|||||+.++ ..+ +| .|.+||+.+++.. .+......+..+..
T Consensus 300 ---~~---~~~~-~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~ 371 (740)
T 4a5s_A 300 ---NC---LVAR-QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA 371 (740)
T ss_dssp ---EE---CGGG-CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE
T ss_pred ---ce---eEEE-EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE
Confidence 00 0000 010001333333 789999999877 665 34 4999999877654 44434455666543
Q ss_pred ecCCCceEEEeec----Cc--eEEEEecccceEEEEecC----CCcceeEEEecCCcceeeeecCC---ceEEEEe
Q 002264 881 HPQDNNIIAIGTE----DS--TIHIYNVRVDEVKSKLKG----HQKRITGLAFSTSLNILVSSGAD---AQVTLCV 943 (945)
Q Consensus 881 s~~~~~~lasg~~----dg--~v~vwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~~~D---g~i~vWd 943 (945)
++++.+++++.. .+ .|+..++.++.....+.. ....+..+.|||||++++..... ..+.+++
T Consensus 372 -~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~ 446 (740)
T 4a5s_A 372 -LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (740)
T ss_dssp -ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred -EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence 424555555554 23 455555555544334442 34678899999999987644322 2455554
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=9.8e-17 Score=173.75 Aligned_cols=313 Identities=9% Similarity=0.095 Sum_probs=209.0
Q ss_pred CccEEEEEE------cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCC
Q 002264 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (945)
Q Consensus 507 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~ 574 (945)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++... ++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445666554 3779999999888877766655444 89999999999987631 112567999999999
Q ss_pred ceeeEecccc-----CcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEE-eecCCCCCCccEEEEcCCC-CEEE
Q 002264 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (945)
Q Consensus 575 ~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~sp~g-~~l~ 645 (945)
+.+..+.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 8888776431 123556899999999999873 68999999999998887 65432 2336677865 6778
Q ss_pred EEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC
Q 002264 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (945)
+.+.||.+.+|+............
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-------------------------------------------------------- 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-------------------------------------------------------- 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--------------------------------------------------------
Confidence 888999999998864212110000
Q ss_pred CCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCcee
Q 002264 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (945)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (945)
...+|+... .. ..+.+++++..++..+.++.+.++|+...... ..
T Consensus 192 -----------~~~~~~~~~-------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~----~~ 236 (361)
T 2oiz_A 192 -----------SKQMFSVKD-------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK----VD 236 (361)
T ss_dssp -----------CCCCSCTTT-------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE----EE
T ss_pred -----------ccceEcCCC-------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce----ec
Confidence 001111110 00 01112455555655666777777775322100 00
Q ss_pred eeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC------------CCeEEEEeccCceEEEEecCCCC
Q 002264 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPP 873 (945)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s------------d~~i~iwd~~~~~~~~~~~~h~~ 873 (945)
..|+........... .......++|+||++.+.++. .++|.+||+.+++.+.++..+.
T Consensus 237 -----~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 237 -----GPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp -----EEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred -----ccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 001111100000000 011122378999988776642 2379999999999999998876
Q ss_pred CeeEEEeecCCCceEEEeecCceEEEEecccc--eEEEEecCCCcceeEEEecCCcce
Q 002264 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNI 929 (945)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~~ 929 (945)
+.+++|+| ++++|++++. ++|.|||..++ +.+.++..+......++++|||+.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGGT 361 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence 99999999 8889988886 99999999999 999998777788899999999863
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=7.8e-17 Score=175.61 Aligned_cols=246 Identities=10% Similarity=0.056 Sum_probs=170.7
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEcc-CCcccccceeeccccccEEEEEEecCCCeeEEEEEe------------
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------------ 472 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s------------ 472 (945)
...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|+|+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889999999999999888 89999997 66543211 11111 235568999999843344543
Q ss_pred -CCCcEEEEe-C-CCceEEEec----CCCCCEEEEEeeecCCccEEEEEEc-CCeEEEEEcc-CCCeeE--EecC--CCC
Q 002264 473 -DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYD-TMGSRV--DYDA--PGH 539 (945)
Q Consensus 473 -~d~~i~vwd-~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~--~~~~--~~~ 539 (945)
.++.+.+|+ . +++....+. .+...+.+++|+| +|++++++.. ++.|++||++ +++... .+.. +..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 689999999 4 566544443 2456789999977 5677777654 6899999998 555432 2332 355
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--CCceee---Eecccc----C-c-------ceEEEE-EcCCCCEEE
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKR---TYAGFR----K-K-------SNGVVQ-FDTTQNHFL 601 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~~~---~~~~~~----~-~-------~~~~~~-~~~~~~~l~ 601 (945)
.+..++|+|||++++++.. .++.+.+|++. +++... .+.... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 6899999999999988763 36788998754 565421 222110 1 1 367799 999999988
Q ss_pred EEECC-C-----cEEEEECC-CCeeEEE---eecCCCCCCccEEEEcC---CCCEEEEEECC-CcEEEEECCCC
Q 002264 602 AVGED-S-----QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (945)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~sp---~g~~l~~~~~d-g~i~iw~~~~~ 661 (945)
+++.+ + .|.+|++. +++.... ...+. ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 77632 2 89999996 5665432 22222 2467899999 89999999864 89999998654
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=3.3e-17 Score=181.87 Aligned_cols=244 Identities=13% Similarity=0.019 Sum_probs=172.5
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc----------ccc--ceeeccccccEEEEEEecCCCeeEEE----
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND----------LRQ--HSQIDAHVGAVNDLAFAYPNKLLCVV---- 469 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~----------~~~--~~~~~~h~~~v~~l~~s~~~~~~~l~---- 469 (945)
...++.+++++++.++++++.++ +++|+...... +.. ......|...|.+++|+|+|+ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL--TLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC--EEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC--EEEEEEe
Confidence 34678899999999999999988 89987642100 000 000113567899999999999 677
Q ss_pred EEeCCCcEEEEe-CCC--------c---eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 470 TCGDDKLIKVWE-LSG--------R---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
+|+.|+.|++|| .++ + .+..+.+|...|.+++|+|. ++.+|++++.||+|++||++++........+
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 788999999999 433 1 24566789999999999986 2579999999999999999988666666667
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceEEEEEcCCCCEEEEEE-CCCc--
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-EDSQ-- 608 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~-~dg~-- 608 (945)
...|.+++|+|+|++|++++. ++.|++||.+ ++....+..+.. ..+.+++|++++.++++.+ .+|.
T Consensus 192 ~~~v~~v~wspdg~~lasgs~----dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQ----NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEET----TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCceeEEEEcCCCCEEEEEcC----CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 788999999999999999985 8999999998 565555544321 2578899999877765533 4433
Q ss_pred ----EEEEECCCCe-----eEEEeecC-----CCCCCccEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 002264 609 ----IKFWDMDNVN-----ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (945)
Q Consensus 609 ----i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~ 658 (945)
+++|++.... ....+... ....+-..+.+-++.+++++++. .+.|.++..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 8999998642 11222111 11112223333366677666655 445666654
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=6.5e-17 Score=176.24 Aligned_cols=270 Identities=9% Similarity=0.052 Sum_probs=173.7
Q ss_pred ceEEEEe--CCCCceeeE--eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeeEEEeecCCCCCCccEEEEc
Q 002264 564 SFLVEWN--ESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 564 ~~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
+.|++|+ ..+++.... ........+..++|+|+++++++++.+ .|.+|++. +++.......... +....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC
Confidence 3566655 456654322 211111246679999999999999887 99999997 7876544332211 135679999
Q ss_pred CCCCE--EEEEE-------------CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 639 KEGNL--LAVTT-------------ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 639 p~g~~--l~~~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
|||++ +++++ .+|.+.+|++.........+.
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~---------------------------------- 137 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ---------------------------------- 137 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE----------------------------------
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe----------------------------------
Confidence 99994 44542 577888888753211110000
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
.+ .. .+...+.+++|+|||++++++.
T Consensus 138 ------------------------------------~~--------------~~----~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 138 ------------------------------------NY--------------EY----QENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp ------------------------------------EE--------------EC----CTTCCEEEEEECTTSSEEEEEE
T ss_pred ------------------------------------eE--------------Ee----CCCCcceEEEECCCCCEEEEEc
Confidence 00 00 0334678899999999887765
Q ss_pred e-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc
Q 002264 784 S-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM 860 (945)
Q Consensus 784 ~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~ 860 (945)
. ++.|++|++.. .++.... . .+....+...+..++|+|||+++++++ ++.|.+|+++
T Consensus 164 ~~~~~v~~~~~~~-----~g~~~~~--------------~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 164 LTANKLWTHRKLA-----SGEVELV--------------G-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TTTTEEEEEEECT-----TSCEEEE--------------E-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEECC-----CCCEEEe--------------e-eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 4 67899998741 1111100 0 011000245688999999999988776 5789999765
Q ss_pred --CceEEE------Eec----CCCC------CeeEEE-eecCCCceEEEeecCc------eEEEEecc-cceEEE---Ee
Q 002264 861 --TFKVMT------TFM----SPPP------ASTFLA-FHPQDNNIIAIGTEDS------TIHIYNVR-VDEVKS---KL 911 (945)
Q Consensus 861 --~~~~~~------~~~----~h~~------~i~~l~-~s~~~~~~lasg~~dg------~v~vwd~~-~~~~~~---~l 911 (945)
+++... .+. +|.. .+..++ |+| ||++|+++..+. +|.+|++. +|+... ..
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 555421 222 1222 588999 999 888887766433 89999996 666543 23
Q ss_pred cCCCcceeEEEecC---CcceeeeecCC-ceEEEEec
Q 002264 912 KGHQKRITGLAFST---SLNILVSSGAD-AQVTLCVE 944 (945)
Q Consensus 912 ~~h~~~V~~l~~s~---dg~~l~s~~~D-g~i~vWdl 944 (945)
..+...+..++|+| ||++|++++.+ +.|.||++
T Consensus 303 ~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 34556678899999 89999998864 89999986
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=6.1e-17 Score=179.05 Aligned_cols=285 Identities=10% Similarity=-0.027 Sum_probs=182.4
Q ss_pred EEEEEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 347 VISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
+.+++|||||++++++...++ .|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 778899999997555554433 68888988775431 112222223347899999999999
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEE-------------------EEEecCCCeeEEEEE-----eCCCcEEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~~~~~~~l~s~-----s~d~~i~vw 480 (945)
+.++.|++||+.+++... ....+...... +.|+|+++ .++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999999876433 22223332222 35677777 33332 456789999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCC-CCeEEEEEEcCCCCE
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~ 552 (945)
| .+++.. .+..+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..+.|+|||+.
T Consensus 174 d~~~g~~~-~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELE-VIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEE-eeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 555544 34456777888998772 34556655543 35788887655433322211 236888999999998
Q ss_pred EEEEeecCC-CCceEEEEeCCCCceeeEeccccCcceEEEEEcC-CCCEEEEEE----------------CCCcEEEEEC
Q 002264 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (945)
Q Consensus 553 l~~~~~~~d-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 614 (945)
|+..+.... ..+.|++||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887764211 1245999999988765433221 123 88999 999888765 3478999999
Q ss_pred CCCeeEEEeecCCCC--------CCccEEEEcCCCCEEEEEEC-CCcEEEE--ECCCC
Q 002264 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKIL--ANAIG 661 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~v~~sp~g~~l~~~~~-dg~i~iw--~~~~~ 661 (945)
.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 888754433222100 02567899999999887775 4554444 44444
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=2.5e-17 Score=182.27 Aligned_cols=320 Identities=11% Similarity=0.035 Sum_probs=201.0
Q ss_pred EEccCCCeeEEecCCCCe-----EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 523 WLYDTMGSRVDYDAPGHW-----CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
.|..++.....+..+... +..++|+|||++|+.... .++...|++||+.+++......+... ....+.|+|+|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~-~~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGD-FDGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEEC-TTSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEe-cCCCceEEEEECCCCcEEEeecCCCC-ccccceECCCC
Confidence 355666555555444322 567789999999888764 23456899999998876554333221 23337899999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
+.|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999999887666554321 7778888877666555544431
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
.+.++|+|+.++.... .....+..|.+|++.. +....+.
T Consensus 146 ----~~~~spdg~~~~~~~~--------------------------------~~~~~~~~l~~~d~~~----g~~~~~~- 184 (396)
T 3c5m_A 146 ----KRDWQPLTSWEKFAEF--------------------------------YHTNPTCRLIKVDIET----GELEVIH- 184 (396)
T ss_dssp ----GGGCCCCCSHHHHHHH--------------------------------HHTCCCEEEEEEETTT----CCEEEEE-
T ss_pred ----ccccCCCCcceeeeee--------------------------------ccCCCcceEEEEECCC----CcEEeec-
Confidence 2356677766542110 0012335677777753 2222221
Q ss_pred CCCCCCccceEEEEEec-CCCeEEEeeecC------eEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCc
Q 002264 758 PESTDTSSKVVRLLYTN-SAVGLLALGSNG------VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~-dg~~l~~~~~dg------~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 830 (945)
. +...+..+.|+| +|+.|+.++.++ .|.+|++ .++.... +.....
T Consensus 185 -~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~----------------------~~~~~~~--l~~~~~ 236 (396)
T 3c5m_A 185 -Q---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE----------------------DGSNVRK--IKEHAE 236 (396)
T ss_dssp -E---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET----------------------TSCCCEE--SSCCCT
T ss_pred -c---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEEC----------------------CCCceeE--eeccCC
Confidence 1 445788999999 888777766532 3444443 2222111 111001
Q ss_pred CCceeEEeecCCCceEEecC-C-----CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee------------
Q 002264 831 EEAVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT------------ 892 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d-----~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~------------ 892 (945)
...+..++|||||++|+.++ + +.|++||+.+++....... . ... +.|+|.+++++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC---------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 23577899999999888775 2 3399999988865443321 1 233 889983455776654
Q ss_pred ----cCceEEEEecccceEEEEecCCCc-----------ceeEEEecCCcceeeeecC-CceEEEEec
Q 002264 893 ----EDSTIHIYNVRVDEVKSKLKGHQK-----------RITGLAFSTSLNILVSSGA-DAQVTLCVE 944 (945)
Q Consensus 893 ----~dg~v~vwd~~~~~~~~~l~~h~~-----------~V~~l~~s~dg~~l~s~~~-Dg~i~vWdl 944 (945)
.++.|++||+.+++. ..+..+.. .+..++|+|||++|+.++. ++...||.+
T Consensus 314 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp -CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 347899999988864 34444544 2677899999998887654 566666643
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=7.6e-16 Score=166.72 Aligned_cols=294 Identities=9% Similarity=0.074 Sum_probs=195.1
Q ss_pred CCCeEEEEE-----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC---
Q 002264 355 SHQTLLLVG-----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT--- 426 (945)
Q Consensus 355 ~g~~llasg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~--- 426 (945)
++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 556544443 2478999999988876531 3334444 8999999999998863
Q ss_pred -------CCcEEEEEccCCcccccceeecc---ccccEEEEEEecCCCeeEEEEEe--CCCcEEEEe-CCCceEEE-ecC
Q 002264 427 -------KHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN-FEG 492 (945)
Q Consensus 427 -------dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd-~~~~~~~~-~~~ 492 (945)
++.|.+||..+++.+..+..... +......++|+|||+ +++++. .+++|.+|| .+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 56799999998876654322211 234567899999999 565554 368999999 77777776 542
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-E------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-D------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.. ...+.+.|.+ ...+++.+.||.+.+|++....... . +.....+ ..+.+++++..++..+. ++.
T Consensus 151 -~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~~ 222 (361)
T 2oiz_A 151 -AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YGN 222 (361)
T ss_dssp -TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TSE
T ss_pred -CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CCe
Confidence 22 2234455543 3678889999999999986533322 1 1111111 12334567777766654 678
Q ss_pred EEEEeCCCCce--eeEecccc------C---cceEEEEEcCCCCEEEEEEC-----------CCcEEEEECCCCeeEEEe
Q 002264 566 LVEWNESEGTI--KRTYAGFR------K---KSNGVVQFDTTQNHFLAVGE-----------DSQIKFWDMDNVNILTST 623 (945)
Q Consensus 566 i~iwd~~~~~~--~~~~~~~~------~---~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~ 623 (945)
+.++|+..... ...+.... . .....++++|+++.++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 99999875532 22211100 0 01123789999888887653 347999999999999998
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC--ccccccccCCccccccCcceeeeeccccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG--LRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
..+. +.+++|+|||++|++++. +.|.+||..++ +.. ..+... ......++++|+|+
T Consensus 303 ~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~~-----G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 303 PGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL-RTIEGA-----AEASLQVQFHPVGG 360 (361)
T ss_dssp ECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE-EEETTS-----CSSEEEEEECCCSC
T ss_pred ecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee-EEeccC-----CCCcEEEEecCCCC
Confidence 7654 799999999999998887 99999999887 432 322111 11245678888875
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=2.7e-15 Score=178.02 Aligned_cols=207 Identities=8% Similarity=0.008 Sum_probs=144.5
Q ss_pred eeccccccEEEEEEecCCCeeEEEEE--eCCCcEEEEe-CCCceEEEecCCCCCEE---------EEEeeecCCccE-EE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGHEAPVY---------SICPHHKENIQF-IF 512 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd-~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~-l~ 512 (945)
.+.+|...+..++|++++- ++++. +.++...||. ..+.....+..+...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 4567899999999997654 77777 6688999999 66667778887776665 555653356777 66
Q ss_pred EEEc-CCeEEEEEcc--CCCeeEEecC-----CCCeEEEEEEcCCCCEEEEEeecC------CCCceEEEEeCCC-----
Q 002264 513 STAI-DGKIKAWLYD--TMGSRVDYDA-----PGHWCTTMLYSADGSRLFSCGTSK------DGDSFLVEWNESE----- 573 (945)
Q Consensus 513 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~~~------d~~~~i~iwd~~~----- 573 (945)
.++. +..|.+|++. .......+.. +...+..++|+|||+.|++++.+. .+...|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5543 4556666554 2034444444 455788999999999999887531 1226899999988
Q ss_pred -CceeeEec-cccCcceEEEEEcCCCCEEEEEECC--------CcEEEEECC-CC---eeEEEeecCCCCCCccEEEEcC
Q 002264 574 -GTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMD-NV---NILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 574 -~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~v~~v~~sp 639 (945)
++.. .+. .+.. .+..++|+|||++|+.++.+ ..|++||+. ++ +.......+. ..+..++|+|
T Consensus 176 ~~~~~-~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~--~~~~~~~~sp 251 (662)
T 3azo_A 176 RSAVR-ELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE--EAIAQAEWAP 251 (662)
T ss_dssp GGGSE-ESSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT--BCEEEEEECT
T ss_pred CCcee-EEEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC--ceEcceEECC
Confidence 5544 333 3333 56678999999999988754 379999998 57 4444443322 3688999999
Q ss_pred CCCEEEEEECCCcEEEEEC
Q 002264 640 EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~ 658 (945)
||+++++++.++...||.+
T Consensus 252 dg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp TSCEEEEECTTSSCEEEEE
T ss_pred CCeEEEEECCCCCeEEEEE
Confidence 9998888877884444433
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=7.5e-15 Score=157.15 Aligned_cols=245 Identities=14% Similarity=0.108 Sum_probs=182.0
Q ss_pred CcEEEEEEeCCCCeEEEEEeCc------------------------CcEEEEEcCCCCcccccccccccccccCcccccc
Q 002264 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (945)
+.|.+++++|+|+ ++++++.+ ++|.+||..+++....
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4799999999998 67777766 4789999887775421
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc-ccccceee---------ccccccEEEEEEec-CCCeeEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI---------DAHVGAVNDLAFAY-PNKLLCVV 469 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~-~~~~~~~~---------~~h~~~v~~l~~s~-~~~~~~l~ 469 (945)
.-.++-.....++++|+|+++++...++.|++|+.++.. .+. .+ .++......++++| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 112345678999999999988888889999999986542 222 22 24455789999999 677 777
Q ss_pred EEe-CCCcEEEEeCCCceEEEecCC----------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--
Q 002264 470 TCG-DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-- 536 (945)
Q Consensus 470 s~s-~d~~i~vwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 536 (945)
+.+ .++.|++||.+|+.+..+... -.....++++++ .+.++++...++.|++||.++++....+..
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 776 689999999888888777432 234889999764 257888888899999999987777766643
Q ss_pred CCCeEEEEEEcCCCCEEEEEee---cCCCCceEEEEeCCCCceeeEec---cccCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 537 PGHWCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~---~~d~~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
....+..++++| +..+.+.+. .......+++||..+++.+..+. .+.. ....++++|+|..+++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEE
Confidence 445788999999 433333221 01135589999999999988874 3333 578899999997777777899999
Q ss_pred EEECCC
Q 002264 611 FWDMDN 616 (945)
Q Consensus 611 iwd~~~ 616 (945)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=2.8e-15 Score=178.00 Aligned_cols=287 Identities=11% Similarity=0.016 Sum_probs=187.5
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEE--eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE--------
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-------- 410 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasg--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-------- 410 (945)
.+|...|..++|++++- +++++ +.++...||....+.... .+..|...+.
T Consensus 20 ~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSG 79 (662)
T ss_dssp HHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCC
T ss_pred hhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCC
Confidence 34778999999998865 35555 557889999964433221 1333444444
Q ss_pred -EEEEc--CCCCE-EEEEEC-CCcEEEEEcc--C-Ccccccceeecc-----ccccEEEEEEecCCCeeEEEEEeCC---
Q 002264 411 -RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD--- 474 (945)
Q Consensus 411 -~i~~s--~~g~~-las~~~-dg~i~vwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~s~~~~~~~l~s~s~d--- 474 (945)
...|+ |||+. |+.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~ 153 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTG 153 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECS
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccC
Confidence 45565 99998 776654 4567777765 3 43 23 3434 677899999999999 67777666
Q ss_pred -------CcEEEEeCCC------ceEEEec-CCCCCEEEEEeeecCCccEEEEEEcC--------CeEEEEEcc-CC---
Q 002264 475 -------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM--- 528 (945)
Q Consensus 475 -------~~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~--- 528 (945)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|.+||+. ++
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999444 4455666 6667777888876 67888887755 379999998 45
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc-------ceEEEEEcCCCCEEE
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHFL 601 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ 601 (945)
........+...+..+.|+|||+.++++. .++...|++||+.+++.......+... .+..++|++++..++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 23333333456789999999999554443 223347888888777765544433221 045688999999999
Q ss_pred EEECCCcEEEE--ECCCCeeEEEeecCCCCCCccEE-EEcCCCCEEEEEECCC--cEEEEECCCC
Q 002264 602 AVGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTADN--GFKILANAIG 661 (945)
Q Consensus 602 ~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~sp~g~~l~~~~~dg--~i~iw~~~~~ 661 (945)
+++. +.+++| |+.+++ +..+..+. ..+..+ +++++.-.+++++.+. .|.++++.++
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9888 999998 665665 45555443 355655 4443333344445554 4555666665
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=4.1e-13 Score=152.52 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=219.5
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc--CCCeeEEecCCCCeEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 543 (945)
++++...+++|.++| .+++.+.++... ..+..+.++| ||+++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 788888899999999 888888887643 3566888866 67899999999999999995 6666666554 345678
Q ss_pred EEEc----CCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc----------CcceEEEEEcCCCCEEEEE-ECCCc
Q 002264 544 MLYS----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQFDTTQNHFLAV-GEDSQ 608 (945)
Q Consensus 544 ~~~s----~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~-~~dg~ 608 (945)
++|+ |||++++++.. ..+.+.++|..+.+.+..+.... ...+..+..++++..+++. ..+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998875 37899999999999888765321 2246678888886655554 46799
Q ss_pred EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
|.++|..+...+....... .....++.|+|+|++++++. .++.|.++|..+++ .......
T Consensus 322 v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-l~~~i~v----------------- 382 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDT----------------- 382 (567)
T ss_dssp EEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEEC-----------------
T ss_pred EEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-EEEEEec-----------------
Confidence 9999998764333322221 12467899999999987766 46899999998772 2211100
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
.|+ ..|..+-
T Consensus 383 gg~----------------------------------------------------------------------~Phpg~g 392 (567)
T 1qks_A 383 GGQ----------------------------------------------------------------------TPHPGRG 392 (567)
T ss_dssp SSS----------------------------------------------------------------------SBCCTTC
T ss_pred cCc----------------------------------------------------------------------CCCCccc
Confidence 000 0022211
Q ss_pred EEEEEecCCCeEEEee--ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 768 VRLLYTNSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
..+ ++|++..+.+.+ .++.|.+++......... . .+.+. .+.. ....-..+.++||+++
T Consensus 393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~----------~-----~kvv~-~i~~--~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN----------A-----WKILD-SFPA--LGGGSLFIKTHPNSQY 453 (567)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT----------B-----TSEEE-EEEC--SCSCCCCEECCTTCSE
T ss_pred eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc----------c-----CEEEE-EEec--CCCCCEEEEeCCCCCe
Confidence 122 567755554433 357888887543110000 0 01111 1111 1122244678999998
Q ss_pred EEecC--------CCeEEEEeccCc-----e-EEEEec--------CCCCCeeEEEeecCCCceEEEee-----cCceEE
Q 002264 846 VMSAT--------GGKISLFNMMTF-----K-VMTTFM--------SPPPASTFLAFHPQDNNIIAIGT-----EDSTIH 898 (945)
Q Consensus 846 la~~s--------d~~i~iwd~~~~-----~-~~~~~~--------~h~~~i~~l~~s~~~~~~lasg~-----~dg~v~ 898 (945)
+.+.. .++|.|+|+.+. . ....+. .....+..+.|++ +|+.+..+. .++.|.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~ 532 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALV 532 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEE
Confidence 88755 247999999877 2 112231 1234689999999 776665553 378999
Q ss_pred EEecccceEEEEecC
Q 002264 899 IYNVRVDEVKSKLKG 913 (945)
Q Consensus 899 vwd~~~~~~~~~l~~ 913 (945)
|+|..+++++.++..
T Consensus 533 v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 533 VVDDKTLELKHVIKD 547 (567)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEECCCceEEEEeCC
Confidence 999999999888875
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.4e-14 Score=156.83 Aligned_cols=262 Identities=10% Similarity=0.114 Sum_probs=176.7
Q ss_pred CcEEEEEEeCCCCeEEEEE--------eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 345 STVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
..+...++ ||++++++. +.++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 36788888 898755542 226789999998775321 2 4688999999
Q ss_pred CCCEEEEEECC---C--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC------------------
Q 002264 417 DGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------ 473 (945)
Q Consensus 417 ~g~~las~~~d---g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~------------------ 473 (945)
||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 37888888775443 223334 99999999999 5555542
Q ss_pred ---------CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC-------eEEEEEccCCCeeEEecC
Q 002264 474 ---------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 474 ---------d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~ 536 (945)
...|.+|| .+++.+..+.. . .+..++|+| +| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25688999 55655355554 3 778888876 66 777776542 44566555 333333333
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCC----CCceEEEEeCCCCceeeEeccccCcceEE-EEEcCCCCEEEEEECCCcEEE
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~i 611 (945)
+ ..+..+ +|||+.|+..+.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 344444 899999988774221 135788998 5655444444333 5665 8899 88 8888899999999
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE-EEEECC
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i-~iw~~~ 659 (945)
| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444432 23688999999 677777777665 777765
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.5e-13 Score=156.17 Aligned_cols=317 Identities=12% Similarity=0.063 Sum_probs=215.3
Q ss_pred CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--CCceeeEecccc
Q 002264 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~~~~~~~~~ 584 (945)
.+.++++...++.|.++|..+++....+.... .+..+.++|||+++++++. ++.|.+||+. +++.+..+....
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECCS
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEecCC
Confidence 44677778889999999999988877766433 4678999999999998874 7899999996 778877776533
Q ss_pred CcceEEEEEc----CCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCC---------CCCccEEEEcCCCCEEE-EEEC
Q 002264 585 KKSNGVVQFD----TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLA-VTTA 649 (945)
Q Consensus 585 ~~~~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g~~l~-~~~~ 649 (945)
....++|+ |+|+++++++ .++.|.++|..+.+.+..+...+. ...+..+..++++..++ ....
T Consensus 241 --~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 241 --EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 35679999 6999998877 569999999999999888764321 12466788888765544 3444
Q ss_pred CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCc
Q 002264 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (945)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (945)
+|.|.++|..+... +.
T Consensus 319 ~g~v~~vd~~~~~~-~~--------------------------------------------------------------- 334 (567)
T 1qks_A 319 TGKILLVDYTDLNN-LK--------------------------------------------------------------- 334 (567)
T ss_dssp TTEEEEEETTCSSE-EE---------------------------------------------------------------
T ss_pred CCeEEEEecCCCcc-ce---------------------------------------------------------------
Confidence 67888888754310 00
Q ss_pred cccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeee
Q 002264 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASA 808 (945)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~ 808 (945)
+..+ . .......+.|+|+|++++++.. ++.|.++|... ++..+..
T Consensus 335 ----------v~~i------------~------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t------~kl~~~i 380 (567)
T 1qks_A 335 ----------TTEI------------S------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE------GKLVAIE 380 (567)
T ss_dssp ----------EEEE------------E------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT------TEEEEEE
T ss_pred ----------eeee------------e------ccccccCceECCCCCEEEEEeCCCCeEEEEECCC------CcEEEEE
Confidence 0000 0 1123456789999998877664 68888887532 1221110
Q ss_pred ccccccCCCcccccccccCCCcCCceeEEeecCC-CceEEecC--CCeEEEEeccC-------ceEEEEecCCCCCeeEE
Q 002264 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT--GGKISLFNMMT-------FKVMTTFMSPPPASTFL 878 (945)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d-g~~la~~s--d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l 878 (945)
+.. + ...|.+.-..+ ++|+ +..++++. +++|.++|..+ .+.+.++......-..+
T Consensus 381 -----~vg-g--------~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i 445 (567)
T 1qks_A 381 -----DTG-G--------QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI 445 (567)
T ss_dssp -----ECS-S--------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred -----ecc-C--------cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE
Confidence 000 0 00133222222 5787 45555553 58899999988 77888888654444668
Q ss_pred EeecCCCceEEEeec-------CceEEEEecccc-----e-EEEEec--------CCCcceeEEEecCCcceeeeec---
Q 002264 879 AFHPQDNNIIAIGTE-------DSTIHIYNVRVD-----E-VKSKLK--------GHQKRITGLAFSTSLNILVSSG--- 934 (945)
Q Consensus 879 ~~s~~~~~~lasg~~-------dg~v~vwd~~~~-----~-~~~~l~--------~h~~~V~~l~~s~dg~~l~s~~--- 934 (945)
.++| ++++|.+... .++|.|+|+.+. . ....+. .....+..+.|+++|+++..+.
T Consensus 446 ~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~ 524 (567)
T 1qks_A 446 KTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG 524 (567)
T ss_dssp ECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred EeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence 8999 8888887653 459999999877 2 123332 1245789999999999877653
Q ss_pred --CCceEEEEec
Q 002264 935 --ADAQVTLCVE 944 (945)
Q Consensus 935 --~Dg~i~vWdl 944 (945)
.++.|.|+|.
T Consensus 525 ~~~~~~i~v~D~ 536 (567)
T 1qks_A 525 KDQESALVVVDD 536 (567)
T ss_dssp TTSCCEEEEEET
T ss_pred CCCCCcEEEEEC
Confidence 3788999884
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=4.6e-14 Score=147.95 Aligned_cols=244 Identities=11% Similarity=0.102 Sum_probs=177.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee---ccccccEEEEEEe-cCCCeeEEEEEeC-CCcEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFA-YPNKLLCVVTCGD-DKLIK 478 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s-~~~~~~~l~s~s~-d~~i~ 478 (945)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+.++++. +++. ++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455679999999999988888889999999987 4443321110 1345678999995 5665 5555533 88999
Q ss_pred EEeCCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec--CCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~ 555 (945)
+||.+++.+..+.. +...+.++++.+ +|+++++...++.|.+||.. +.....+. .....+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99977887777643 345688899866 56777777788999999964 34444443 23346899999999986666
Q ss_pred EeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCC-cEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 543 778999997 455666664432 12578899999998888877775 9999995 566666666554333467
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+++++|+|+++++ +.++.|++|+...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999999987766 6799999999854
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.9e-14 Score=154.05 Aligned_cols=244 Identities=10% Similarity=0.009 Sum_probs=180.5
Q ss_pred CccEEEEEEcCCCCEEEEEECC------------------------CcEEEEEccCCcccccceeec-cccccEEEEEEe
Q 002264 406 PISVSRVAWSPDGNYVGVAFTK------------------------HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFA 460 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~d------------------------g~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s 460 (945)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+. .+. ++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEEEC
Confidence 3579999999999999888777 479999998887654 222 455678999999
Q ss_pred cCCCeeEEEEEeCCCcEEEEeCCCc--eEEEe---------cCCCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEccCC
Q 002264 461 YPNKLLCVVTCGDDKLIKVWELSGR--KLFNF---------EGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTM 528 (945)
Q Consensus 461 ~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 528 (945)
++|+ ++++...++.|++||.++. .+..+ .++......+++++. ++.++++.+ .++.|++|| ..+
T Consensus 100 ~~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 100 TDGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp TTSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEEC-TTS
T ss_pred CCCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEc-CCC
Confidence 9999 7888888999999996665 55555 344456889998763 456777776 699999999 445
Q ss_pred CeeEEecCCC----------CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc-cCcceEEEEEcCCC
Q 002264 529 GSRVDYDAPG----------HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQ 597 (945)
Q Consensus 529 ~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 597 (945)
.....+.... .....++++|++..++++.. +++.|++||..+++.+..+... ....+..++++| +
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence 5554443221 24789999999555555443 4789999999989988887532 122577888998 3
Q ss_pred CEEEEE-------ECCCcEEEEECCCCeeEEEeec-CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 598 NHFLAV-------GEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 598 ~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
..+.+. ..+..|++|+..+++.+..+.. ..+......++++|+|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333332 2355899999999999888742 12334678999999998888888899999999854
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=6.3e-14 Score=146.90 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=176.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-cCCCCEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~-s~~g~~l 421 (945)
|-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+.. +. . .....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~--~~---~--------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ--FG---E--------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE--EC---C--------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE--ec---c--------cCCCcccccCceEEEEEcCCCeEE
Confidence 445799999999998 68887889999999976 443321 00 0 0001245567899999 5777777
Q ss_pred EEEEC-CCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec--CCCCCE
Q 002264 422 GVAFT-KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPV 497 (945)
Q Consensus 422 as~~~-dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--~~~~~v 497 (945)
++... ++.|.+|+ .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. .+...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 66643 78999999 4555443 232 3445789999999998 7888888899999997777776664 344568
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCc-eEEEEeCCCC
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEG 574 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~-~i~iwd~~~~ 574 (945)
.++++++ +|.++++...++.|++||.. +.....+.... ..+..++++++|+.+++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8999876 56777777789999999974 44444554432 46889999999987777653 54 8999995 56
Q ss_pred ceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 575 TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 575 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
+.+..+..+.. ..+..++++|+|+.+++ +.++.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66666655432 23678999999976655 67999999998654
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.1e-13 Score=148.76 Aligned_cols=272 Identities=10% Similarity=0.010 Sum_probs=184.7
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|.+++|+|++.. ++..+.++.++.|. ++.. ..+.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~-------------------~~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPW-------------------LEISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEE-------------------EEEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---ccee-------------------EEEeccCccccCcEECCCCCEEEEE
Confidence 36788899999874 66667788999993 2222 1244566678999999999988888
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEe-CCCceEEEec--CCCCCE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd-~~~~~~~~~~--~~~~~v 497 (945)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+|| ..+.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998875433 1224567899999999998 67776666 6899999 5444432332 234568
Q ss_pred EEEEeeecCCccEEEEEEc------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
.++++.+ +|.++++... .+.|..+|...+.... +......+..++|+|+++.++++.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8898876 5566665543 2455555554433322 2222234788999999997766542 2678999998
Q ss_pred CC-CceeeEe------ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC----CCCccEEEEcCC
Q 002264 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (945)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~sp~ 640 (945)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322211 1111125677999999998887778899999998 5666666654321 114789999999
Q ss_pred CCEEEEEECCC
Q 002264 641 GNLLAVTTADN 651 (945)
Q Consensus 641 g~~l~~~~~dg 651 (945)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 88777666553
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.4e-13 Score=164.05 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=174.0
Q ss_pred cCCCccEEEEEEcCCCCEEEEEECCC-----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc-
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~- 476 (945)
.+|...+..++|||||++||.+..++ .|++||+.+|+.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCcc
Confidence 34666799999999999999876543 899999999876542 12 222367899999999 6777776665
Q ss_pred ---------------EEEEe-CCCc----eEEEecCCCCCEEEEEeeecCCccEEEEEEc-----CCeEEEEEccC----
Q 002264 477 ---------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (945)
Q Consensus 477 ---------------i~vwd-~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~---- 527 (945)
|++|+ .++. .+.....+...+.++.|+| ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 5554 2222233455677888866 6678877765 56899999986
Q ss_pred --CC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce--eeEeccccC-cceEEEEEcCCCCEEE
Q 002264 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (945)
Q Consensus 528 --~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~ 601 (945)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. .+.+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 34445444444443 48899999888775333356899999987742 234444433 3577788887777777
Q ss_pred EEECCCc--EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .++|..||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777874 667788778777777665 336788999999887664432 4789999998874
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=4.5e-13 Score=144.84 Aligned_cols=255 Identities=9% Similarity=0.088 Sum_probs=166.4
Q ss_pred CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC-CCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
++.|.+||+.+++... + ..+..+.|+|||+.|+..+... ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 5678999988766433 2 4578899999999999877522 124468899998887666554432 78899999
Q ss_pred CCCEEEEEECC---------------------------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 596 TQNHFLAVGED---------------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 596 ~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
+|+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+||| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEe
Confidence 99999888742 5799999999887444543 1 57899999999 777776
Q ss_pred CCC-------cEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCC
Q 002264 649 ADN-------GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (945)
Q Consensus 649 ~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (945)
.++ ...+|.+.++ .
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~---------------------------------------------------------- 209 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-K---------------------------------------------------------- 209 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-E----------------------------------------------------------
T ss_pred cccccccccccccEEEeCCC-c----------------------------------------------------------
Confidence 542 2233322111 0
Q ss_pred ccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecC--------eEEEEee
Q 002264 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG--------VQKLWKW 793 (945)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg--------~i~lw~~ 793 (945)
...+. . + ..+..+ +|||+.|+.++.++ .|.+|
T Consensus 210 ------------------------------~~~l~--~---~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~-- 249 (347)
T 2gop_A 210 ------------------------------EEKMF--E---K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY-- 249 (347)
T ss_dssp ------------------------------EEEEE--E---E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE--
T ss_pred ------------------------------eEEec--c---C-cceeeE--CCCCCEEEEEEccccCCccccceEEEE--
Confidence 00000 0 1 122333 78888887776542 33333
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeE-EeecCCCceEEecC-CCeEEEEeccCceEEEEecCC
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC-IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h 871 (945)
+ +++.. ....+ +...+.. ++|+ |+ ++++++ ++.++|| +.+++....+ .+
T Consensus 250 --------------------d--~~~~~-~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~ 300 (347)
T 2gop_A 250 --------------------D--GKEVM-GILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KG 300 (347)
T ss_dssp --------------------C--SSCEE-ESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CS
T ss_pred --------------------C--CCceE-ecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cC
Confidence 2 12211 11222 4566776 8999 88 878777 7889999 8776664444 45
Q ss_pred CCCeeEEEeecCCCceEEEeecCceE-EEEecccceEEEEecCCCcc
Q 002264 872 PPASTFLAFHPQDNNIIAIGTEDSTI-HIYNVRVDEVKSKLKGHQKR 917 (945)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v-~vwd~~~~~~~~~l~~h~~~ 917 (945)
.+.|.+++|+| .++++++.++.. .||.+. ++ ...+..|...
T Consensus 301 ~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 301 RHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp SSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred CCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 77899999997 577777777765 777776 54 4556666554
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=4.3e-13 Score=159.87 Aligned_cols=301 Identities=10% Similarity=0.030 Sum_probs=182.3
Q ss_pred CCCCEEEEEeecCCC-CceEEEEeCCCCceeeEeccc-----cCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCC
Q 002264 548 ADGSRLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGF-----RKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDN 616 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 616 (945)
|+|++++.......+ .+.+++.+...++....+... ....+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788888766543221 225566665555443322211 112477899999999998876433 899999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++......... .+..++|+|||+.|+.++.++. .. .. .+...
T Consensus 161 g~~~~~~~~~~---~~~~~~wspDg~~l~~~~~~~~-------~~-~~----~~~~~----------------------- 202 (710)
T 2xdw_A 161 AKELPDVLERV---KFSCMAWTHDGKGMFYNAYPQQ-------DG-KS----DGTET----------------------- 202 (710)
T ss_dssp TEEEEEEEEEE---CSCCEEECTTSSEEEEEECCCC-------SS-CC----SSSCC-----------------------
T ss_pred CCCCcccccCc---ccceEEEEeCCCEEEEEEECCc-------cc-cc----ccccc-----------------------
Confidence 98776432221 3678999999999999887754 00 00 00000
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
.......|++|++....... ......+ .+...+..+.|||||
T Consensus 203 ----------------------------------~~~~~~~v~~~~l~t~~~~~-~~v~~~~---~~~~~~~~~~~SpDg 244 (710)
T 2xdw_A 203 ----------------------------------STNLHQKLYYHVLGTDQSED-ILCAEFP---DEPKWMGGAELSDDG 244 (710)
T ss_dssp ----------------------------------CCCCCCEEEEEETTSCGGGC-EEEECCT---TCTTCEEEEEECTTS
T ss_pred ----------------------------------ccCCCCEEEEEECCCCcccc-eEEeccC---CCCeEEEEEEEcCCC
Confidence 00000223333332211000 0000111 144557789999999
Q ss_pred CeEEEeee-----cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-
Q 002264 777 VGLLALGS-----NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (945)
Q Consensus 777 ~~l~~~~~-----dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s- 850 (945)
++|+..+. +..+.+|++........ +......+.. +...+.. .|++||+.|+..+
T Consensus 245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----------------~~~~~~~l~~--~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 245 RYVLLSIREGCDPVNRLWYCDLQQESNGIT----------------GILKWVKLID--NFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSC----------------SSCCCEEEEC--SSSSCEE-EEEEETTEEEEEEC
T ss_pred CEEEEEEEccCCCccEEEEEECcccccccC----------------CccceEEeeC--CCCcEEE-EEeccCCEEEEEEC
Confidence 99988775 45777777643100000 1000001222 3333333 5889998777664
Q ss_pred C----CeEEEEeccCce--EEEEecCCCC--CeeEEEeecCCCceEEEeecCce--EEEEecccceEEEEecCCCcceeE
Q 002264 851 G----GKISLFNMMTFK--VMTTFMSPPP--ASTFLAFHPQDNNIIAIGTEDST--IHIYNVRVDEVKSKLKGHQKRITG 920 (945)
Q Consensus 851 d----~~i~iwd~~~~~--~~~~~~~h~~--~i~~l~~s~~~~~~lasg~~dg~--v~vwd~~~~~~~~~l~~h~~~V~~ 920 (945)
. ..|.+||+.+++ ....+..|.. .+..+.|++ ++.++++...|+. |++|++.+|+.+..+..+.+.|.+
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVG 384 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEE
Confidence 2 359999998764 2244444544 588899997 8889999998985 566777678888888888888999
Q ss_pred EEecCCcceeee----ecCCceEEEEec
Q 002264 921 LAFSTSLNILVS----SGADAQVTLCVE 944 (945)
Q Consensus 921 l~~s~dg~~l~s----~~~Dg~i~vWdl 944 (945)
++++|++..++. ....++|++||+
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 999999976662 234578999986
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=5.9e-13 Score=140.21 Aligned_cols=246 Identities=7% Similarity=-0.021 Sum_probs=174.0
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.....+.....+++|+|+|+.+++++..++.|..|+..++ .. .+..+...+.+++++|+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--------------------~~~~~~~~~~~l~~~~d 79 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--------------------PEMHPSHHQNGHCLNKQ 79 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE--------------------EEESSCSSEEEEEECTT
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE--------------------EEECCCCCcceeeECCC
Confidence 3344466788999999999877889988999999998876 21 13346678999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEE----e-------------CCCcEEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTC----G-------------DDKLIKV 479 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~----s-------------~d~~i~v 479 (945)
|+++++...++.|.+||..+++.........+ ....+.+++++|+|. ++++. + ..+.|..
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEE
Confidence 99888777778999999987764321111111 123567899999998 67763 2 1345666
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-CCCe---eEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++..++ +..+..+......++|++ +++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+..++
T Consensus 158 ~~~~g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 158 LAPDGT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp ECTTSC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred ECCCCC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence 664444 445555667788999876 55777777788999999987 3332 2222233445678999999986665
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE-cCCCCEEEEEECCCcEEEEECCCCee
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
. ++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.+ .+.-++..+...
T Consensus 235 ~------~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 235 A------GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp E------TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred c------CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4 4679999986 777777776554 677888 5888999998876 455666666554
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=6.5e-12 Score=132.34 Aligned_cols=282 Identities=9% Similarity=-0.051 Sum_probs=192.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+...+.+++++++|+ +.++...++.|.+||.. ++... .....+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~------------------~~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITE------------------YPLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEE------------------EECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEE------------------ecCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 56655557899999987 44321 01122446799999999999888
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEE-EecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~v~~~~ 501 (945)
+...++.|..|+.+ ++ .... .+......+.++++.++|. ++++...++.|.+||.+++... ........+.+++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87768889999976 33 2211 2223455789999999998 7777777889999997554432 2233455688888
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
+.+ +|.+.++...++.|..||. ++..... .......+..++++++|+..++.. ..+.|..||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEEE
Confidence 765 5567766666789999998 4443322 233345688999999998666543 2678999999 66644321
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.......+..++++++|+.+++...++.|..||. ++.. ..+....+...+.++++ ++|.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2112235788999999886655557889999998 4543 34433333346889999 8888766654 56777777765
Q ss_pred C
Q 002264 661 G 661 (945)
Q Consensus 661 ~ 661 (945)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 4
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=1.4e-13 Score=163.45 Aligned_cols=248 Identities=10% Similarity=-0.058 Sum_probs=165.1
Q ss_pred cCCCccEEEEEEcCCCCEEEEE-----ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc-
Q 002264 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~-----~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~- 476 (945)
.+|...+.+++|||||++||.+ +.+..|++||+.+|+.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4577789999999999999943 4456899999999875511 012111 126799999999 7788877776
Q ss_pred ------------EEEEe-CCCc----eEEEecCCCCCEEEEEeeecCCccEEEEEEcCC----eEEEEEccCCCeeEEec
Q 002264 477 ------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 477 ------------i~vwd-~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 535 (945)
|++|+ .++. .+.....+...+.++.|++ ||++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 5554 3333344556788888876 667777777665 56666554433 33344
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce---eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 536 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
.+...+....+ ++|+ ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44444455555 6777 655543222468999999987753 333333324357778887 56677778888888877
Q ss_pred ECC-CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
.+. ++.....+..+. ...+..++++|+++.++.... .++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 455555555432 235778889999987774433 4789999998874
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=7e-13 Score=136.93 Aligned_cols=243 Identities=11% Similarity=0.069 Sum_probs=179.0
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
+|++++.++.|.+||.++|+.+-+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 799999999999999989987632 22233 4678999999999998 35778999998 7
Q ss_pred Ccccccceeeccc-cccEEEEEEecCCCeeEEEEEeC-CCcEEEEeCCCceEEEecC------CCCCEEEEEeeecCCcc
Q 002264 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQ 509 (945)
Q Consensus 438 ~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 509 (945)
|+.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ ..+|+
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 77665 34333 34688999999999 7787776 7788888888888777642 1122333343 44778
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---- 585 (945)
++++...++.|..||.+ ++.+..+.... ...++...++|+.+++... ++.|..+|..+|+.+..+.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999987 88888877653 3456778899998888763 66899999999999988864321
Q ss_pred -cceEEEEEcCCCCEEEEEECC--------CcEEEEEC-CCCeeEEEeecCCCCCCccEEE
Q 002264 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 586 -~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 126778888999888877421 23355555 4778888877666666666654
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=4.2e-13 Score=143.21 Aligned_cols=270 Identities=11% Similarity=-0.017 Sum_probs=183.6
Q ss_pred CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccc
Q 002264 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (945)
Q Consensus 365 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~ 444 (945)
.+++|.+||..+++.... + +.. ..-.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~--i--~~~---------~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENE--V--FYR---------ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECS--H--HHH---------HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhh--h--Hhh---------hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 478999999998876531 1 000 0001122446777774 455555566678999999999887663
Q ss_pred eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC-----CCEEEEEeeecCCccEEEEEE-cC
Q 002264 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA-ID 517 (945)
Q Consensus 445 ~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 517 (945)
+. .......+++++++. ++++...++.|.+|| .+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 346788999999985 666665799999999 7777766665333 14456666 2 334444443 48
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC------CceEEEEeCCCCceeeEeccccCcceEEE
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 591 (945)
+.|.++|..+++....+.... ....+.++|+|+.++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 999999999887776665433 35678899999876665421000 26899999999988877654333357889
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEE----ECCCcEEEEECCCC
Q 002264 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANAIG 661 (945)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~----~~dg~i~iw~~~~~ 661 (945)
+++|+++.++++.. .|++||..+++................++++| ++.+.++. ..++.|.+|+.. +
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 99999999988765 89999998887532111111123578899999 55555555 567899999987 5
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=2.8e-12 Score=135.84 Aligned_cols=312 Identities=8% Similarity=-0.045 Sum_probs=200.6
Q ss_pred ecCCccEEEEEEc-----CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCC
Q 002264 504 HKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNES 572 (945)
Q Consensus 504 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~ 572 (945)
|.++++.+++... ++.|.+.|..+.+....+.....+ . +.++|||++++++... +..++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4557777777765 689999999998888777665555 4 9999999999877520 0125679999999
Q ss_pred CCceeeEecccc------CcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 573 EGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 573 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
+++.+..+.... ......+.++|+|++++++.. ++.|.++|+.+++.+..+...+ + ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999888875321 113455899999999999874 6899999999999999987643 1 22333345677
Q ss_pred EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccC
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (945)
++.+.||.+.+.++.+......... . .|.++...
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~----~---------~~~~~~~~--------------------------------- 226 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT----E---------VFHPEDEF--------------------------------- 226 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC----C---------CCSCTTSC---------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec----c---------eecccccc---------------------------------
Confidence 7888899999998875212110000 0 00000000
Q ss_pred CCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEe-cCCCeEEEeeecCeEEEEeecCCCCCCCCc
Q 002264 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (945)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (945)
+ ....+|. ++|+.++ .+.+|.+.+.|+..........
T Consensus 227 ---------------~--------------------------~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 227 ---------------L--------------------------INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp ---------------B--------------------------CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred ---------------c--------------------------cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 0 0011343 5665333 4457788887754322111000
Q ss_pred eeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-----------CCeEEEEeccCceEEEEecCCC
Q 002264 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPP 872 (945)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~ 872 (945)
|++...... ..+ -..+....++++++++.+.++. .+.|.++|+.+++.+.++.. .
T Consensus 265 ---------~~~~~~~~~---~~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g 330 (386)
T 3sjl_D 265 ---------VEALTEAER---ADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-G 330 (386)
T ss_dssp ---------EESSCHHHH---HTT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-E
T ss_pred ---------eeccccccc---ccc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-C
Confidence 110000000 000 0123345678899998877763 14599999999999998873 3
Q ss_pred CCeeEEEeecCCCc-eEEEe-ecCceEEEEecccceEEEEecCCCcceeEEEecCC
Q 002264 873 PASTFLAFHPQDNN-IIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 873 ~~i~~l~~s~~~~~-~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
..+..|+|++ |++ +|++. ..++.|.|+|..+++.+.++..- +.-..|.+++|
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 4688999999 665 55554 55899999999999999988743 44556677776
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=8.3e-13 Score=139.04 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=167.1
Q ss_pred ccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++++++|. ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7778888999999999876 33 4555777899999999998 77777777899999
Q ss_pred e-CCCceEEEecCC----CCCEEEEEeeecCCccEEEEEEc-----------------CCeEEEEEccCCCeeEEecCCC
Q 002264 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 481 d-~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
| .+++........ ...+..+++.+ +|+++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 577754333221 12456678765 6677776321 2345555443 3444444555
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCce---eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
.....++|+|+++.+++.+ .++.|++||+. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 5678999999999984443 37789999986 5554 3344 2222345679999999866555 789999998
Q ss_pred CCCeeEEEeecCCCCCCccEEEE-cCCCCEEEEEECCCcEEEEECCCC
Q 002264 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~-sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 6 777777765432 789999 5899999998876 4444555443
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.7e-11 Score=127.62 Aligned_cols=278 Identities=9% Similarity=0.023 Sum_probs=184.7
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
....+.+++++++|+.+++.. .++.|..||.. ++............+..+++++++..+++...++.|..|+..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~----~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQH----KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEET----TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCCccceEECCCCCEEEEec----CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345789999999999777654 26789999988 554432212122367889999999877776668899999986
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++. ..+........+.+++++++|.++++...++.|..|+. ++.. . .+
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~-~~---------------------------- 134 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-R-EY---------------------------- 134 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E-EE----------------------------
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-E-Ee----------------------------
Confidence 332 33332222346789999999988887767788888877 3311 0 00
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
..+. ....+.++++.++|
T Consensus 135 -----------------------------------------------------------~~~~---~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 135 -----------------------------------------------------------ELPN---KGSYPSFITLGSDN 152 (299)
T ss_dssp -----------------------------------------------------------ECSS---TTCCEEEEEECTTS
T ss_pred -----------------------------------------------------------cCCC---CCCCCceEEEcCCC
Confidence 0000 12345778888888
Q ss_pred CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEE
Q 002264 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 855 (945)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~ 855 (945)
...++...++.|..|+. .+.. ....+.. ....+.+++++++|+++++.. ++.|.
T Consensus 153 ~l~v~~~~~~~i~~~~~-------~g~~----------------~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-------SGDI----------------TEFKIPT--PASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp CEEEEETTTTEEEEECT-------TCCE----------------EEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CEEEEeCCCCEEEEEcC-------CCcE----------------EEeeCCC--CCCcceeEEECCCCCEEEEccCCceEE
Confidence 76666555677777753 1111 1100111 344578999999998777765 68899
Q ss_pred EEeccCceEEEE-ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeee
Q 002264 856 LFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 856 iwd~~~~~~~~~-~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
+||. +++.... +..+...+.++++++ ++++.++...++.|.+||. +++.... +..+...+.++++ ++|.++++.
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred EECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 9998 6664332 333456799999999 7887776667889999998 4543322 3455678999999 999888876
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
+.+ .+..++.
T Consensus 284 ~~~-~l~~~~~ 293 (299)
T 2z2n_A 284 ECD-KIGKLTL 293 (299)
T ss_dssp TTT-EEEEEEE
T ss_pred cCC-cEEEEEc
Confidence 644 4555553
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=3.7e-13 Score=159.90 Aligned_cols=248 Identities=6% Similarity=-0.073 Sum_probs=159.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEE----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
|...+.+++|||||++++++. +.+.+|++||+.+++.+.. ..+.+. ....++|+|||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----------------DVIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----------------CCBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----------------cccCcc--cccceEEecCC
Confidence 455799999999999644443 3346899999999876411 001111 12578999999
Q ss_pred CEEEEEECCCc-------------EEEEEccCCccc-ccceeeccccccEEEEEEecCCCeeEEEEEeCCC----cEEEE
Q 002264 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVW 480 (945)
Q Consensus 419 ~~las~~~dg~-------------i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~----~i~vw 480 (945)
+.|+.++.|.. |++|++.++..- ..+.....|...+.++.|+|||+ +++.++.++ .|.+|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEE
Confidence 99999988776 999999887532 12222334667899999999999 455444444 67777
Q ss_pred eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCe---eEEecCC-CCeEEEEEEcCCCCEE
Q 002264 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAP-GHWCTTMLYSADGSRL 553 (945)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~~~~~l 553 (945)
+..+.....+..+...+....+ + +|.+++.+. .++.|.+||+.++.. ...+... ...+..++++ ++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7323334455555555555555 3 345444443 258899999877653 2222222 4467888887 55556
Q ss_pred EEEeecCCCCceEEEEeCC-CCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCee
Q 002264 554 FSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (945)
++... ++..++|... +++..+.+..+....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 334 ~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66554 5555555433 35555556554333566778889888777543 347899999998874
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=7.8e-12 Score=134.15 Aligned_cols=238 Identities=11% Similarity=0.018 Sum_probs=162.6
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
...+...+.+++|+|+|+ +++++..++.|.+||..+++... ....+...+.+++|+|+|+
T Consensus 40 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~-------------------~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSC
T ss_pred EeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE-------------------EeeCCCCCcceEEECCCCc
Confidence 334667889999999998 78888889999999998776431 1223557899999999999
Q ss_pred EEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC------CCcEEEEeCCCceEEE
Q 002264 420 YVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFN 489 (945)
Q Consensus 420 ~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~ 489 (945)
+++++..+ +.|.+||.+++...... .-..+...+.+++++|+|. ++++... .+.|..+|..+..+..
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP 176 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEE
Confidence 88877666 68999998876543211 1112456799999999998 6666553 3456666644333333
Q ss_pred ecCCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEccCC-CeeEE------ecCC-CCeEEEEEEcCCCCEEEEEeecC
Q 002264 490 FEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTM-GSRVD------YDAP-GHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~------~~~~-~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+......+..++|++ +++.+ ++.+.++.|.+||++.. ..... .... ...+..++++++|+.+++...
T Consensus 177 ~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-- 252 (333)
T 2dg1_A 177 IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-- 252 (333)
T ss_dssp EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET--
T ss_pred eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC--
Confidence 333444578888876 55645 45556889999998642 22211 1111 146788999999987776642
Q ss_pred CCCceEEEEeCCCCceeeEeccccC-----cceEEEEEcCCCCEEEEEECCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDS 607 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg 607 (945)
++.|.+||. +++.+..+..... ..+..++|+++++.|++++.++
T Consensus 253 --~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 --QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp --TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred --CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 5666666654322 1467889999988887776553
No 194
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.52 E-value=1.7e-09 Score=130.58 Aligned_cols=486 Identities=8% Similarity=0.034 Sum_probs=281.6
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|.++...++|. |-.|+.+ -+..||..+++... +. . . .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~---~~---~---------~-~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQN---FF---Y---------E-KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEE---EC---C---------E-ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEe---cc---c---------c-ccCCCceEEEEEECCCCCEEEEE
Confidence 5799999999997 3445554 47899987654321 00 0 0 00000118889888888766643
Q ss_pred ECCCcEEEEEccCCcccccceeeccc-ccc-EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec--CCCCCEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAH-VGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYS 499 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~-v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~--~~~~~v~~ 499 (945)
. +.+..|+.++++.... ...+ ... |.++...+++. +.+ ++.++.+..|+ .+++.. .+. .....|.+
T Consensus 149 -~-~gl~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 149 -P-EGLIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFE-KVIPILGTKQIQA 219 (795)
T ss_dssp -T-TEEEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEE-ECC----CCCEEE
T ss_pred -C-CceEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEE-EecCCCCCCeeEE
Confidence 4 4488999876542211 0011 123 88898888886 444 56555688999 554432 321 23456888
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
+.... ++. +..++.++-+..||..+........ .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEE--TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcC--CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 77644 444 5556655558889876654332211 1235799999998888665442 3 58899988
Q ss_pred CCceeeEecc------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC----CCCCCccEEEEcCCCC
Q 002264 573 EGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----GGLPNLPRLRFSKEGN 642 (945)
Q Consensus 573 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~sp~g~ 642 (945)
++........ .....|.++..+++|. +..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765443221 1223588888888875 566777788999987665433221111 0123588999888887
Q ss_pred EEEEEECCCcEEEEECCCCccccccccCCc---c-ccccCcceeeeeccccc-ceeccCCCCCccccccCCCCCCCcccC
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAVENPP---F-EALRTPIESVALKVSAS-SAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~-~~~~~~i~~v~~s~~g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+ ..|+.++.|..|+..++. . ..+.... . ......|.++...++|. +.+
T Consensus 370 l-WiGt~~~Gl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi------------------------ 422 (795)
T 4a2l_A 370 L-WIGTNDGGLNLYNPITQR-F-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI------------------------ 422 (795)
T ss_dssp E-EEEESSSCEEEECTTTCC-E-EEECCC------CCSCSCEEEEEEETTTTEEEE------------------------
T ss_pred E-EEEECCCCeEEEcCCCCc-E-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEE------------------------
Confidence 4 457778789999987652 1 1111110 0 11234567777777776 443
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCC
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~ 797 (945)
|+.++.+..++... +................|.++...++|...+... + .+..|+....
T Consensus 423 --------------gt~~~Gl~~~d~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~- 481 (795)
T 4a2l_A 423 --------------GTHAGGLSILHRNS----GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQR- 481 (795)
T ss_dssp --------------EETTTEEEEEETTT----CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTT-
T ss_pred --------------EeCcCceeEEeCCC----CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCC-
Confidence 22223344444331 1122211100011345788999888888555543 4 4666653221
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEec-------C
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-------S 870 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~-------~ 870 (945)
.... +..... ...+ ....|.++..+++|++.+... +.|..||..+++. .+. .
T Consensus 482 -----~~~~------~~~~~~---~~~~----~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l 540 (795)
T 4a2l_A 482 -----SFTT------IEKEKD---GTPV----VSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNV 540 (795)
T ss_dssp -----EEEE------CCBCTT---CCBC----CCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGG
T ss_pred -----eEEE------cccccc---cccc----CCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCC
Confidence 1100 000000 0001 346789999999998777665 6688999877665 332 1
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec---C-CCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK---G-HQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~---~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
....|.++...+ +|.+.+ |+.. -+..||..+++.. .+. + ....|.++...++|.+.+++ ..| |..||
T Consensus 541 ~~~~i~~i~~d~-~g~lWi-gT~~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~ 611 (795)
T 4a2l_A 541 TKLFTNCIYEAS-NGIIWV-GTRE-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NRG-ISCFN 611 (795)
T ss_dssp GGSCEEEEEECT-TSCEEE-EESS-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-EEEEE
T ss_pred CCCeeEEEEECC-CCCEEE-EeCC-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CCc-eEEEc
Confidence 234689999988 776554 4444 5889998776543 332 1 23468889999999887765 344 55555
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=1.3e-12 Score=135.49 Aligned_cols=239 Identities=7% Similarity=-0.051 Sum_probs=164.3
Q ss_pred cEEEEEEeCCCCeEEE-EEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~lla-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
...+++++|+|+ +++ +.+.++.|.+|+..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 676 54678899999876543221 011233467889999999966665
Q ss_pred ECCCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
. ++.|.+||..++... .+. .....+.++++.++|. ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 122 2335789999999998 777777788999998 444333322233345678887
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
.+ +|+++++...++.|.+||................+..++++++|..+++.. .++.|.+||........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCccee-ecc
Confidence 65 557777777788999999876554433223335688999999996665554 36789999987654333 221
Q ss_pred ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 111257889999999877777889999999987544
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=5.5e-11 Score=125.22 Aligned_cols=279 Identities=10% Similarity=-0.036 Sum_probs=189.6
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....+.+++++++|+ +.++...++.|.+||.. ++... + .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999998 56666668899999977 44321 0 0223346789999999999888
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEE-EecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~v~~~~ 501 (945)
+...++.|..||.. ++.. .. .+......+.++++.++|. ++++...++.|..||..++... .+......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-EY-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeE-Ee-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77667889999987 5432 11 2223446789999999998 7777776889999995466542 2333455688888
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
+.+ ++++.++...++.|..||. .+.... ........+..+++.++|...++.. ..+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEEE
Confidence 765 5566666666788999987 333332 2223345688999999997666543 2567999998 55544332
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.......+..++++++|+..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2112235788999999886665556789999998 45433 333332234689999999998666544 4 6766665
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=2.5e-12 Score=136.32 Aligned_cols=282 Identities=11% Similarity=0.099 Sum_probs=186.6
Q ss_pred EEeCCCCeEEEEEeC----cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-
Q 002264 351 DFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (945)
Q Consensus 351 ~fsp~g~~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~- 425 (945)
...|+++.++++-.. ++.|.+.|..+++.+.. +.....+ . +++||||+++.++.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan~ 97 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAST 97 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEcc
Confidence 446888875555443 67999999999887642 2212233 3 99999999887775
Q ss_pred ---------CCCcEEEEEccCCcccccceeecc----ccccEEEEEEecCCCeeEEEEEe--CCCcEEEEe-CCCceEEE
Q 002264 426 ---------TKHLIQLYSYAGSNDLRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 426 ---------~dg~i~vwd~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd-~~~~~~~~ 489 (945)
.++.|.+||..+++.+..+..-.+ .......++|+|||+ +++.+. .++.|.++| .+++.+.+
T Consensus 98 ~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 98 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 367899999999877664321110 012456799999999 455444 378999999 88888887
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEec----CCCCeE-EEEEE-cCCCCEEEEEeecCCC
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYD----APGHWC-TTMLY-SADGSRLFSCGTSKDG 562 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~----~~~~~i-~~~~~-s~~~~~l~~~~~~~d~ 562 (945)
+.... .. .+.|.+ .+.+++.+.||.+.+.++.. +....... .....+ ....| .++|+++++..
T Consensus 176 I~v~g--~~--~~~P~g-~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~----- 245 (386)
T 3sjl_D 176 LDVPD--CY--HIFPTA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY----- 245 (386)
T ss_dssp EECCS--EE--EEEEEE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-----
T ss_pred EECCC--cc--eeecCC-CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-----
Confidence 75322 11 122432 35677888999999999876 33322111 111122 12355 36776655442
Q ss_pred CceEEEEeCCCCc--eeeEec---------cccCcceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeeEE
Q 002264 563 DSFLVEWNESEGT--IKRTYA---------GFRKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILT 621 (945)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 621 (945)
++.+++.|..+.. ....+. +........++++++++.+++... .+.|.++|+.+++.+.
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 6789999997654 333332 111112334778999999888653 2579999999999999
Q ss_pred EeecCCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCcccccccc
Q 002264 622 STDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (945)
.+.... .+..+++++|++ .|++.. .++.|.++|..++ +.++.+.
T Consensus 326 ~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~ 371 (386)
T 3sjl_D 326 KFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 371 (386)
T ss_dssp EEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEec
Confidence 987653 578999999997 666654 4899999999988 4444443
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=2.1e-12 Score=133.94 Aligned_cols=239 Identities=8% Similarity=-0.095 Sum_probs=165.8
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce
Q 002264 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (945)
Q Consensus 408 ~V~~i~~s~~g~~la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~ 486 (945)
...+++++++|++++ +.+.++.|.+|+..++.... ....+...+.+++++++|. ++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 688999999999777 44678899999976543221 1123345688999999998 666666 8899999955554
Q ss_pred EEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 487 LFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 487 ~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
...+.. ....+.++++.+ +|.++++...++.|.+|+..+.............+..++++++|+.+++... ++.
T Consensus 99 ~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~ 172 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NNR 172 (270)
T ss_dssp CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GTE
T ss_pred EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CCE
Confidence 444432 235688898866 5577777777889999976544333322222235678999999986655442 678
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
|.+||.............. ..+..++++++|..+++...++.|.+|+..+..... ... .+...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEE
Confidence 9999988765543322222 357889999999766666678899999987654433 221 2223678999999999888
Q ss_pred EEECCCcEEEEECCCC
Q 002264 646 VTTADNGFKILANAIG 661 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (945)
+...++.|++++....
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8888999999998654
No 199
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.50 E-value=4.6e-09 Score=126.72 Aligned_cols=488 Identities=9% Similarity=0.022 Sum_probs=283.3
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|+++.-.++|. |-.|+.+| +..||-.+ ++.+..... ....+ ....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~----~~~~l--~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNED----DPNSI--ANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTT----CTTSC--SCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCC----CCCcc--cccceeEEEECCCCCEEE-E
Confidence 4799999999995 55666666 45566432 111110000 00001 246799999999988665 4
Q ss_pred ECCCcEEEEEccCCcccccceeecccc----ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC-C-CCC-
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP- 496 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~-~-~~~- 496 (945)
+.+| +..||..+++.. .+.... ..|.++...++|. +.+ ++. +.+..|| .+++ ...+.. . ...
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~-~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESK-FIDDSFSTAMHKT 174 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTE-EECSSSCHHHHTC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCE-EEeccCCCCCCcc
Confidence 4555 899998765422 122111 1288898888887 444 343 5588999 4443 322221 1 112
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
|.++.... ++. +..++.++.+..|+..+....... ......|.++...+++...+... ++-+..||..+++
T Consensus 175 i~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQ--GDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEE--TTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECC--CCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 77777654 444 555676656888987665433221 12245688888888777655442 3348899988766
Q ss_pred eeeEeccc------cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-----CCCCCccEEEEcCCCCEE
Q 002264 576 IKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 576 ~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~sp~g~~l 644 (945)
........ ....+.++...++|.. ..|+.+ -|.+|+..++......... -....|.++...++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 54332211 1235888888887764 455555 5899998877654433211 11246889999998874
Q ss_pred EEEECCCcEEEEECCCCccccccccCC--ccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCc
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENP--PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (945)
..|+.++.|..|+..++. +..+... ........|.++...++|.+.+
T Consensus 324 Wigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi----------------------------- 372 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI----------------------------- 372 (795)
T ss_dssp EEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEEE-----------------------------
T ss_pred EEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-----------------------------
Confidence 557777889988875542 1111111 1112234467777777776553
Q ss_pred cCCCCCccccCCCCCCcccccceeecCCcceeeecCC-C---CCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE-S---TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~---~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
|+.++.+..|+... ..+....... . ......|.++...++|..|..++.++.+..|+.....
T Consensus 373 ---------Gt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~- 438 (795)
T 4a2l_A 373 ---------GTNDGGLNLYNPIT----QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ- 438 (795)
T ss_dssp ---------EESSSCEEEECTTT----CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-
T ss_pred ---------EECCCCeEEEcCCC----CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-
Confidence 33334455555431 1121111100 0 0124578899998888845555665667777643211
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecC------CC
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS------PP 872 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~------h~ 872 (945)
.. .+..... .+ ....|.++...++|++.+... +.|.+||..+++....... ..
T Consensus 439 -----~~------~~~~~~~-----~l----~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 439 -----VE------NFNQRNS-----QL----VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp -----EE------EECTTTS-----CC----SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred -----EE------EeecCCC-----Cc----CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCC
Confidence 10 0000000 01 346789999999998776655 5688999887655332211 23
Q ss_pred CCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec-------CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-------GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
..|.++...+ ++++.+ |+. +-|..||..+++. .+. .....|.++...++|.+.+++.. | |..||.
T Consensus 498 ~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G-l~~~d~ 569 (795)
T 4a2l_A 498 KQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G-FYCFNE 569 (795)
T ss_dssp CCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C-EEEEET
T ss_pred ceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C-ceeECC
Confidence 5689999988 776554 444 4599999887765 332 13457899999999987775543 5 666663
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=6.6e-11 Score=127.76 Aligned_cols=275 Identities=7% Similarity=-0.063 Sum_probs=178.3
Q ss_pred EeCCCCeEEEEEe-CcC---cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE--
Q 002264 352 FHPSHQTLLLVGS-SNG---EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (945)
Q Consensus 352 fsp~g~~llasgs-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-- 425 (945)
..|++++++++-. ... +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~~ 86 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALASTS 86 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEecc
Confidence 4467775444332 222 889999998876532 2212233 899999999999886
Q ss_pred --------CCCcEEEEEccCCcccccceee-cc---ccccEEEEEEecCCCeeEEEEEeC--CCcEEEEeCCCceEEE-e
Q 002264 426 --------TKHLIQLYSYAGSNDLRQHSQI-DA---HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWELSGRKLFN-F 490 (945)
Q Consensus 426 --------~dg~i~vwd~~~~~~~~~~~~~-~~---h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~-~ 490 (945)
.++.|.+||..+.+.+..+..- .. +......++|+|||+ +++.+.. ++.|.++|.+++.+.. +
T Consensus 87 ~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~~i 164 (373)
T 2mad_H 87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQLL 164 (373)
T ss_pred ccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeEEc
Confidence 3678999999887665533211 00 012355899999999 5555543 5789999933444444 3
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-----CCCCe-EEEEEEcCCCCEEEEEeecCCCCc
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHW-CTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
. .... +.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+. .+
T Consensus 165 ~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~ 234 (373)
T 2mad_H 165 S-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SG 234 (373)
T ss_pred C-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----Cc
Confidence 3 2222 33444433 46677888999999999 665553221 11111 233456676665554443 66
Q ss_pred eEEEEeCCCCc--eeeEeccc---------cCcceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeeEEEe
Q 002264 565 FLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTST 623 (945)
Q Consensus 565 ~i~iwd~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 623 (945)
.+.+.|...+. .+..+... .......+.++++++.++++.. .+.|.++|..+++.+..+
T Consensus 235 ~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i 314 (373)
T 2mad_H 235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE
Confidence 89999987553 22222110 0112334788999998888653 357999999999999988
Q ss_pred ecCCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCc
Q 002264 624 DAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGL 662 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~ 662 (945)
.... ...+++|+|||+ .++++. .++.|.++|..+++
T Consensus 315 ~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 315 SLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 7543 469999999999 777776 48999999999883
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2.8e-12 Score=153.51 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=160.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEECC-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc--
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~-- 476 (945)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455678999999999999987654 3599999999876431 112222467899999 8 5666655543
Q ss_pred ------------EEEEe-CCCce--EEEec--CCCCCEEEEEeeecCCccEEEEEEcCC-----eEEEEEccCC--CeeE
Q 002264 477 ------------IKVWE-LSGRK--LFNFE--GHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSRV 532 (945)
Q Consensus 477 ------------i~vwd-~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 532 (945)
|++|+ .++.. ...+. .+...+.++.|++ ||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88899 44431 22333 3334577888865 678888777554 8999999876 3133
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
.+..+...+... ++|+|+.|+..+........|.+||+.++ .....+..+ ...+..+.++ ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 444443333444 34899999888754333677999999875 334444433 3356667776 455677777888777
Q ss_pred EEECC-CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
+|.++ ++.....+..+. ...+..++++|+++.++.... .++|++||+.++.
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 76544 455556665432 236788999999886663322 4789999998774
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=5.3e-11 Score=128.53 Aligned_cols=295 Identities=10% Similarity=-0.008 Sum_probs=182.7
Q ss_pred EcCCCCEEEEEeecCCCCc---eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----------CCCcEEEE
Q 002264 546 YSADGSRLFSCGTSKDGDS---FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFW 612 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw 612 (945)
..|++++++++... +.. .|.++|..+++.+..+..... . .++++|++++++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~--~~~~~~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPA--HHSAIIQQWVLDAGSGSILGHVNGGFL--P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCc--ccCCccEEEEEECCCCeEEEEecCCCC--C-CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 44778777766320 122 789999999998888775433 3 799999999999986 36789999
Q ss_pred ECCCCeeEEEeecCCC-----CCCccEEEEcCCCCEEEEEEC--CCcEEEEECCCCcccccc-ccCCccccccCcceeee
Q 002264 613 DMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA--DNGFKILANAIGLRSLRA-VENPPFEALRTPIESVA 684 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~l~~~~~--dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~i~~v~ 684 (945)
|..+.+.+..+...+. ......++|+|||++|+++.. ++.|.++| .++ +.... +... .++.
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~~---------~~~~ 171 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQLLSSP---------TCYH 171 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC-CEEeEEcCCC---------ceEE
Confidence 9999988887765310 012458999999999998874 47899999 887 33333 2211 1233
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCccee-eecCCCCCC
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL-VTMPESTDT 763 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~ 763 (945)
+.|++...+ ++.+.||.+.+++. .......... ..+.+ .
T Consensus 172 ~~~~~~~~~------------------------------------~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~---~ 211 (373)
T 2mad_H 172 IHPGAPSTF------------------------------------YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA---A 211 (373)
T ss_pred EEeCCCceE------------------------------------EEEcCCCCEEEEEC-CCcEEEEEeccccccC---C
Confidence 444443322 23333455555554 2111100000 00000 1
Q ss_pred ccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCC
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg 843 (945)
..-.....+.+++..++..+..+.+.+.|+...... . +.-|+..+........ .......+++++|+
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~----v-----~~~~~~~~~~~~~~~~----~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT----N-----KAPIDALSGGRKADTW----RPGGWQQVAYLKSS 278 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcce----E-----eeeeeecCCcccccce----ecCceEeEEECCCC
Confidence 111233567777766666667788888776432110 0 0112221111110000 12234457899999
Q ss_pred ceEEecC-----------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc-eEEEee-cCceEEEEecccceEEEE
Q 002264 844 SYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSK 910 (945)
Q Consensus 844 ~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~-~lasg~-~dg~v~vwd~~~~~~~~~ 910 (945)
+.+.++. ++.|.++|+.+++.+.++.. .....+++|+| |++ +++++. .++.|.|||+.+++.+.+
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 8777653 24699999999999998863 34689999999 777 777776 589999999999998887
Q ss_pred e
Q 002264 911 L 911 (945)
Q Consensus 911 l 911 (945)
+
T Consensus 357 i 357 (373)
T 2mad_H 357 T 357 (373)
T ss_pred e
Confidence 4
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=9.3e-12 Score=128.48 Aligned_cols=215 Identities=11% Similarity=0.011 Sum_probs=165.4
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC-
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE- 494 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~- 494 (945)
.+++|++++.|+.|.+||.++|+.+. .+..+. ..+.+++++|+|+ +++ +.++.|..||.+|+.+..+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~~d~~G~~~W~~~~~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW---EYPLEKGWECNSVAATKAGE--ILF--SYSKGAKMITRDGRELWNIAAPAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE---EEECCTTCCCCEEEECTTSC--EEE--ECBSEEEEECTTSCEEEEEECCTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE---EeCCCccCCCcCeEECCCCC--EEE--eCCCCEEEECCCCCEEEEEcCCCC
Confidence 46789999999999999998998765 444454 4688999999998 677 34788999998899998888653
Q ss_pred CCEEEEEeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEecCCC------CeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 495 APVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
..+.++.+.+ +|+++++.+. ++.|..+|. .++.+..+.... .....+++.++|+++++... ++.|.
T Consensus 77 ~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----~~~v~ 149 (276)
T 3no2_A 77 CEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----TSEVR 149 (276)
T ss_dssp CEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----TTEEE
T ss_pred ccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----CCEEE
Confidence 4677777654 7789988887 788887875 455555443211 13445678899999988763 88999
Q ss_pred EEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC----CCCCccEEEEcCCCCE
Q 002264 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEGNL 643 (945)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~sp~g~~ 643 (945)
.||.. |+.+.++.... ....+.+.++++.+++++.++.|..+|..+|+.+..+.... ....+..++..++|.+
T Consensus 150 ~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp EECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred EECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 99998 99988887653 34557788999999998888899999999999998886432 1123678888899998
Q ss_pred EEEEE
Q 002264 644 LAVTT 648 (945)
Q Consensus 644 l~~~~ 648 (945)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88874
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=3e-10 Score=119.51 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=183.1
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
....+.++++.++|+..++.. .++.|.+||.. ++............+..++++++++.+++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQH----KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEET----TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECCCCCEEEEcC----CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 345788999999998777654 26889999988 554432222222357889999999877766668889999987
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++.. .+........+.+++++++|+++++...++.|..++.. +.. . .+
T Consensus 92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~-~~---------------------------- 139 (300)
T 2qc5_A 92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y-EY---------------------------- 139 (300)
T ss_dssp SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E-EE----------------------------
T ss_pred CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E-Ec----------------------------
Confidence 5543 33332222468899999999887776667788888765 311 0 00
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
.++. ....+.++++.++|
T Consensus 140 -----------------------------------------------------------~~~~---~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 140 -----------------------------------------------------------DLPN---KGSYPAFITLGSDN 157 (300)
T ss_dssp -----------------------------------------------------------ECSS---TTCCEEEEEECTTS
T ss_pred -----------------------------------------------------------cCCC---CCCCceeEEECCCC
Confidence 0000 12245678888888
Q ss_pred CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEE
Q 002264 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 855 (945)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~ 855 (945)
+..++...++.|..|+. .+... ...... ....+.+++++++|+++++.. .+.|.
T Consensus 158 ~l~v~~~~~~~i~~~~~-------~g~~~----------------~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-------TGKLE----------------EYPLPT--NAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp SEEEEETTTTEEEEECT-------TCCEE----------------EEECSS--TTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CEEEEecCCCeEEEECC-------CCcEE----------------EeeCCC--CCCCcceEEECCCCCEEEEccCCCEEE
Confidence 85555555677777753 11111 100111 345678999999998777765 57899
Q ss_pred EEeccCceEEEE-ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEE-EecCCCcceeEEEecCCcceeeee
Q 002264 856 LFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 856 iwd~~~~~~~~~-~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
+|+. +++.... +..+...+.++++++ ++++.++...++.|.+||. +++... .+......+.++++.++|+.+++.
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred EEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 9998 4554332 333456689999999 7887776666789999998 454332 234345678999999999877766
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
. . .|..+|.
T Consensus 290 ~-~-~i~~~~p 298 (300)
T 2qc5_A 290 K-C-KIGKLNL 298 (300)
T ss_dssp S-S-EEEEEEE
T ss_pred c-C-ceEEeCC
Confidence 5 4 6666664
No 205
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.44 E-value=1.6e-11 Score=130.82 Aligned_cols=245 Identities=9% Similarity=0.025 Sum_probs=168.1
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
.....+++.. .++.++...++.|.+||..+++.+.. +. .......++++++++..++.
T Consensus 44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~-------------------i~-~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGR-------------------IT-GFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEE-------------------EE-CCSSEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEE-------------------cC-CCCCCcEEEEeCCCeEEEEE
Confidence 3567787753 34677777789999999999887632 21 23568899999999555544
Q ss_pred ECCCcEEEEEccCCcccccceeecc---ccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCCceEEEecCCCCCEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~~~~~~~~~~~~~v~~ 499 (945)
..++.|.+||..+++....+. ... +......+++ . +.. ++++.. .++.|.+|| .+++.+..+.... ....
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~-~~~-lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~ 176 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-Y-GKY-VYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTS 176 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-E-TTE-EEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCC
T ss_pred CCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-E-CCE-EEEEcCCCCCEEEEEECCCCeEEEEEEcCC-Cccc
Confidence 478999999999887554221 111 1114556777 3 442 444443 488999999 7788777765433 3456
Q ss_pred EEeeecCCccEEEEEEcC----------CeEEEEEccCCCeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 500 ICPHHKENIQFIFSTAID----------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
+++++ +|++++++..+ +.|.++|..+.+....+... +.....++++|+++.++++. ..|.+
T Consensus 177 i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~------~~v~~ 248 (328)
T 3dsm_A 177 LVMDK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN------NDIWR 248 (328)
T ss_dssp CEECT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES------SSEEE
T ss_pred eEEcC--CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc------cEEEE
Confidence 66654 66766665544 78999999887766565543 34678999999999998863 38999
Q ss_pred EeCCCCceeeE-eccccCcceEEEEEcCCC-CEEEEE----ECCCcEEEEECCCCeeEEEeec
Q 002264 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQ-NHFLAV----GEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~----~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
||..+++.... +..........++++|++ ..+++. ..++.|.+||.. ++.+..+..
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 99988876421 111112357789999954 444444 468899999998 888887764
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=8.1e-11 Score=127.26 Aligned_cols=295 Identities=8% Similarity=-0.033 Sum_probs=191.4
Q ss_pred CCccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCC
Q 002264 506 ENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (945)
Q Consensus 506 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~ 574 (945)
+++..+++.... +.|.++|..+.+.+..+.....+ .+.++|||++++++... +..++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 455656555542 69999999999888887766655 89999999999887521 012568999999999
Q ss_pred ceeeEeccc--c----CcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-CEEE
Q 002264 575 TIKRTYAGF--R----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NLLA 645 (945)
Q Consensus 575 ~~~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~l~ 645 (945)
+.+..+... . ......+.++|+|++++++.. ++.|.+.|+.+++.+..+...+ +....|+| ..++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEEE
Confidence 998877532 0 112345889999999999874 5789999999999999887632 13344433 5566
Q ss_pred EEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC
Q 002264 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (945)
+.+.||.+.+.+..++ .......
T Consensus 234 ~~~~dG~~~~V~~~~~-~v~~~~~-------------------------------------------------------- 256 (426)
T 3c75_H 234 MNCRDGSLARVDFADG-ETKVTNT-------------------------------------------------------- 256 (426)
T ss_dssp EEETTSSEEEEECCTT-CCEEEEC--------------------------------------------------------
T ss_pred EEcCCCCEEEEECCCC-cEEEEee--------------------------------------------------------
Confidence 6777888888877443 1110000
Q ss_pred CCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCcee
Q 002264 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (945)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (945)
.+++... . .....+.+++++..++.....+.+.+.|+.......
T Consensus 257 -------------~~~~v~~-----------------~-p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v----- 300 (426)
T 3c75_H 257 -------------EVFHTED-----------------E-LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF----- 300 (426)
T ss_dssp -------------CCCSCTT-----------------S-CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-----
T ss_pred -------------eeeccCC-----------------C-ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-----
Confidence 0111100 0 000123456677666666666777777653221100
Q ss_pred eeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-----------CCeEEEEeccCceEEEEecCCCCC
Q 002264 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPA 874 (945)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~~~ 874 (945)
+.-|............ .......+++++|++++.++. ++.|.++|+.+++.+.++.. ...
T Consensus 301 ----~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~ 371 (426)
T 3c75_H 301 ----RAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHE 371 (426)
T ss_dssp ----CCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEE
T ss_pred ----eeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCC
Confidence 0001111000000000 112233478999988766653 24699999999999999863 235
Q ss_pred eeEEEeecCCCc-eEEEee-cCceEEEEecccceEEEEe
Q 002264 875 STFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 875 i~~l~~s~~~~~-~lasg~-~dg~v~vwd~~~~~~~~~l 911 (945)
...++|+| |++ ++++.. .++.|.|+|+.+++.+.++
T Consensus 372 P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 89999999 777 777777 5899999999999999887
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=7e-11 Score=125.43 Aligned_cols=249 Identities=11% Similarity=0.058 Sum_probs=164.5
Q ss_pred cCCCcEEEEEEeCCCCeEEEE-------EeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llas-------gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..-..+.+++|+++|. ++++ +..++.|.+||..+++.... . . ....++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEE
Confidence 3445778999999997 6777 56788999999877764310 0 0 001124467899999
Q ss_pred cCC-CCEEEEEECCCcEEEEEccCCccccc-ceeec-cccccEEEEEEecCCCeeEEEEEeCC---------------Cc
Q 002264 415 SPD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD---------------KL 476 (945)
Q Consensus 415 s~~-g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d---------------~~ 476 (945)
+++ |+++++. ..+.|.+||.+ ++.... ..... .....+.++++.++|. ++++...+ +.
T Consensus 79 ~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 7655554 44479999988 653221 11111 1224588999999998 66666544 56
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEee--ecCCccEEEEE-EcCCeEEEEEcc-CCCe-----eEEecCCC-CeEEEEEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFIFST-AIDGKIKAWLYD-TMGS-----RVDYDAPG-HWCTTMLY 546 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~ 546 (945)
|..||..++... +..+......++++ .+++++.++.+ ..++.|.+||++ .+.. ...+..+. .....+++
T Consensus 155 l~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 155 IYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 777774455433 33334456788887 11355555444 567899999986 3321 11222222 56788999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (945)
+++|+.+++... ++.|.+||..+++....+..+.. .+.+++++++++.|++++ .++.|..|++..
T Consensus 234 d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999987777653 67899999987877766665543 678899999999666655 568899999764
No 208
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=1.4e-07 Score=113.46 Aligned_cols=497 Identities=11% Similarity=0.067 Sum_probs=280.0
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|+|+.-.++|. |-.|+.+| +..||-.+- +.+..... ......+ ....|.++...++|..|-.|
T Consensus 19 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~f--------~~~~~~~~--~~~~~~l--~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGF--LWFATEEG-LNKFDGTRF--------ITYYKEEQ--SSSVQSI--TGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEECSSSE--------EEECCCSS--CSSSCCC--SCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCC--EEEccCCc-CccccCCce--------EEEEcCCC--CCccccc--cccccceEEEcCCCCEEEEE
Confidence 4899999999995 55666666 556774321 11111000 0000001 23569999999988845557
Q ss_pred ECCCcEEEEEccCCccccccee-ecc---ccccEEEEEEec--CCCeeEEEEEeCCCcEEEEeCCCceEEEecC------
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQ-IDA---HVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG------ 492 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~-~~~---h~~~v~~l~~s~--~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~------ 492 (945)
+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.+..+|........+..
T Consensus 84 t~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l 160 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPAL 160 (781)
T ss_dssp ESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTTC
T ss_pred eCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccCC
Confidence 7774599999887543211000 000 123688888877 665 3445545568889943333444421
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
....|.++.... ++ .|..++.++-+..||..+....... ......|.++...++|...+... . -
T Consensus 161 ~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~-G 231 (781)
T 3v9f_A 161 PSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K-G 231 (781)
T ss_dssp SCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-E
T ss_pred CccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-c
Confidence 134577776544 43 4556777766888887665432211 11235688999888887666542 3 6
Q ss_pred EEEEeCCCCceeeEecc------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee-------cC-----C
Q 002264 566 LVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE-----G 627 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----~ 627 (945)
+.+||..+++....... .....+.++...++| .+..|+..+-|.+++..++....... .. -
T Consensus 232 l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 232 LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp EEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSB
T ss_pred HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence 89999877655432211 122357888887766 46667775678899987765432221 10 1
Q ss_pred CCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC-----ccccccCcceeeeecccccceeccCCCCCcc
Q 002264 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP-----PFEALRTPIESVALKVSASSAVSSGTPANCK 702 (945)
Q Consensus 628 ~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~ 702 (945)
....|.++...++|. |..|+.++.|..++..+.. ...+... ........|.++...++|.+.+
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi--------- 378 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI--------- 378 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSCEEE---------
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCCEEE---------
Confidence 123688899988886 4566767788888876542 1111110 1111233466777666666543
Q ss_pred ccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEe
Q 002264 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (945)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 782 (945)
|+.++.+..++...... .... .........|.++...++|...+ +
T Consensus 379 -----------------------------gt~~~Gl~~~~~~~~~~----~~~~-~~~~~~~~~v~~i~~d~~g~lWi-g 423 (781)
T 3v9f_A 379 -----------------------------GTDGGGINVFENGKRVA----IYNK-ENRELLSNSVLCSLKDSEGNLWF-G 423 (781)
T ss_dssp -----------------------------EEBSSCEEEEETTEEEE----ECC------CCCSBEEEEEECTTSCEEE-E
T ss_pred -----------------------------EeCCCcEEEEECCCCeE----EEcc-CCCCCCCcceEEEEECCCCCEEE-E
Confidence 33334455555432111 1000 00011346788888888887544 4
Q ss_pred eecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCc
Q 002264 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF 862 (945)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~ 862 (945)
+.++.+..++.. ++......... .....|.++...++|++.+... +.|..||..++
T Consensus 424 t~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 424 TYLGNISYYNTR----------------------LKKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASK 479 (781)
T ss_dssp ETTEEEEEECSS----------------------SCEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSS
T ss_pred eccCCEEEEcCC----------------------CCcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCC
Confidence 544556666421 11111000000 0346789999988888766555 66899998776
Q ss_pred eEEEEecCC-----CCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC----CCcceeEEEecCCcceeeee
Q 002264 863 KVMTTFMSP-----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 863 ~~~~~~~~h-----~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~ 933 (945)
+........ ...|.++...+ ++++.+ |+.++-+..||..+++.. .+.. ....|.++...++|.+.++.
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred eEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence 543332212 35699999988 776554 555445888998766533 3321 23568999999999877755
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
. +|.|..||.
T Consensus 557 ~-~Glv~~~d~ 566 (781)
T 3v9f_A 557 G-EGLVCFPSA 566 (781)
T ss_dssp T-TEEEEESCT
T ss_pred C-CCceEEECC
Confidence 4 675466653
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1.2e-11 Score=147.82 Aligned_cols=247 Identities=9% Similarity=-0.035 Sum_probs=154.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
|...+..++|||||++++++.+.+| +|++||+.+++.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 3347899999999997444433333 699999999876421 001122357899999
Q ss_pred CEEEEEECCCc--------------EEEEEccCCcccc-cceeeccccccEEEEEEecCCCeeEEEEEeC-----CCcEE
Q 002264 419 NYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIK 478 (945)
Q Consensus 419 ~~las~~~dg~--------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-----d~~i~ 478 (945)
+.|+.++.++. |++|++.++.... .+.....+...+..+.|+|||+ +++..+. ...|.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEE
Confidence 99998887654 8899987765321 1112223444689999999999 4444443 34899
Q ss_pred EEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEc----CCeEEEEEccCCC-e-eEEecCCCCeEEEEEEcCC
Q 002264 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-S-RVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 479 vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s~~ 549 (945)
+|| .++ +....+..+...+.... .+ +|..|+..+. ++.|.+||+.++. . ...+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFV-DG--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEE-EE--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEE-ec--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 554 31455555555554443 34 4566766665 3459999988742 2 33333444466677776 4
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCee
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (945)
+..+++... ++...|.++++ ++...+.+..+....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 445555543 22334555565 35555556543334677888999887666432 357899999998873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.2e-10 Score=123.59 Aligned_cols=245 Identities=12% Similarity=0.032 Sum_probs=163.6
Q ss_pred CCccEEEEEEcCCCCEEEE-------EECCCcEEEEEccCCcccccce-eeccccccEEEEEEecC-CCeeEEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGV-------AFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYP-NKLLCVVTCGDDK 475 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las-------~~~dg~i~vwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~ 475 (945)
.-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ |. ++++.. .+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CC
Confidence 3346789999999998888 5778899999988775432100 01125567999999999 65 445444 44
Q ss_pred cEEEEeCCCceEEE-ecC----CCCCEEEEEeeecCCccEEEEEEcC---------------CeEEEEEccCCCeeEEec
Q 002264 476 LIKVWELSGRKLFN-FEG----HEAPVYSICPHHKENIQFIFSTAID---------------GKIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 476 ~i~vwd~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~ 535 (945)
.|.+||..++.... ... ....+.++++.+ +|.++++...+ +.|..||.. ++. ..+.
T Consensus 93 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD 168 (314)
T ss_dssp EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE
T ss_pred CEEEEeCCCCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEec
Confidence 78999944654332 221 123477888865 56677666554 566666654 332 2222
Q ss_pred CCCCeEEEEEEc----CCCCEEEEEeecCCCCceEEEEeCC-CCce-----eeEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 536 APGHWCTTMLYS----ADGSRLFSCGTSKDGDSFLVEWNES-EGTI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 536 ~~~~~i~~~~~s----~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
........++++ ++++.++++.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 222346788999 99987766542 36789999976 4432 22233222024677999999988888778
Q ss_pred CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCC
Q 002264 606 DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (945)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~ 661 (945)
++.|.+||..+++.+..+..+. ..+.+++++|+|+.|++++ .++.|..|++...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 8999999998777766666543 3689999999999555554 5678999998643
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=4.6e-11 Score=129.19 Aligned_cols=277 Identities=9% Similarity=0.071 Sum_probs=186.0
Q ss_pred CCCCeEEEEEeCc----CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE----
Q 002264 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (945)
Q Consensus 354 p~g~~llasgs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~---- 425 (945)
|+++++.++...+ +.|.++|..+++.+.. +.--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 4666655555444 7999999999887743 1112234 799999999888775
Q ss_pred ------CCCcEEEEEccCCcccccceeec--c---ccccEEEEEEecCCCeeEEEEEeC--CCcEEEEe-CCCceEEEec
Q 002264 426 ------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 426 ------~dg~i~vwd~~~~~~~~~~~~~~--~---h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd-~~~~~~~~~~ 491 (945)
.++.|.++|..+++.+..+. +. . .......++|+|||+ +++.+.. ++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987766432 21 0 112345789999999 5555543 68899999 7888877776
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE----ecCCCCe-EEEEEEcCCCCEEEEEeecCCCCceE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFL 566 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i 566 (945)
... . ....|.+. ..+++.+.||.+.+.+..+++.... +.....+ ...+.+.+++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 422 1 22334333 5667778889888888844443321 1111111 123567899888877664 6789
Q ss_pred EEEeCCCCcee--eEeccc---------cCcceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeeEEEeec
Q 002264 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (945)
.+.|....... ..+... .......++++++++.+++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0001223689999988887642 35799999999999999876
Q ss_pred CCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCcccccc
Q 002264 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 667 (945)
.. ....++|+|||+ .+++.. .++.|.++|..++ +.++.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t 408 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS 408 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence 43 368999999999 888888 4899999999988 34443
No 212
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=4.1e-07 Score=109.42 Aligned_cols=495 Identities=10% Similarity=0.032 Sum_probs=276.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CCCEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g~~la 422 (945)
..|.++...++|.. |-.|+.++-+..||..+++... +.... ... ..-....|.++.... +|.+.
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~------~~~~~----~~~--~~l~~~~i~~i~~d~~~~g~lw- 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSV------YQYNP----EDP--QSLITNDVTHITSSVQAGKGLW- 131 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEE------ECCCT----TCS--SSCSCSCEEEEEECSSTTSEEE-
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEe------ecccc----CCC--CCcccCcceEEEecCccCCCEE-
Confidence 36999999998872 4456666578999987654321 00000 000 000124689998887 66654
Q ss_pred EEECCCcEEEEEccCCccccccee--ec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC-------
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQ--ID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG------- 492 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~--~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~------- 492 (945)
.++.++.+..|+..+++... ... .. -....|.++...++|. +..|+.++-+..||........+..
T Consensus 132 i~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 45544458889987654221 100 00 1234688888888776 3446656568889943333333321
Q ss_pred -CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 493 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
....|.++... .++. |..|+.+ -+.+||..+....... ......|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d--~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKD--TNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEEC--TTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEc--CCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 13457777653 3444 4455555 6888987654332211 12345689999888887655432 35
Q ss_pred eEEEEeCCCCceeeEec-------------cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec------
Q 002264 565 FLVEWNESEGTIKRTYA-------------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA------ 625 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 625 (945)
-|.++|..++....... +.....|.++...++|. |..|+.++-|..++..++........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 68889987765432211 11223578888888775 66777777889998876553332110
Q ss_pred -CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccc
Q 002264 626 -EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (945)
Q Consensus 626 -~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~ 704 (945)
.-....|.++...++|.+ ..|+.++.|..|+..++. ...+. .........|.++...++|.+.+.
T Consensus 358 ~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~-~~~~~~~~~v~~i~~d~~g~lWig---------- 423 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRV--AIYNK-ENRELLSNSVLCSLKDSEGNLWFG---------- 423 (781)
T ss_dssp SCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEE--EECC------CCCSBEEEEEECTTSCEEEE----------
T ss_pred CCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCe--EEEcc-CCCCCCCcceEEEEECCCCCEEEE----------
Confidence 111236888988888764 456666779999986542 11111 111122345667777667665542
Q ss_pred ccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
+.++.+..++... ..+...... ......|.++...++|...+.. .
T Consensus 424 ----------------------------t~~~Gl~~~~~~~----~~~~~~~~~--~~~~~~v~~i~~d~~g~lwigt-~ 468 (781)
T 3v9f_A 424 ----------------------------TYLGNISYYNTRL----KKFQIIELE--KNELLDVRVFYEDKNKKIWIGT-H 468 (781)
T ss_dssp ----------------------------ETTEEEEEECSSS----CEEEECCST--TTCCCCEEEEEECTTSEEEEEE-T
T ss_pred ----------------------------eccCCEEEEcCCC----CcEEEeccC--CCCCCeEEEEEECCCCCEEEEE-C
Confidence 2223333443321 111111110 0134578888888888755543 3
Q ss_pred cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceE
Q 002264 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV 864 (945)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~ 864 (945)
+.+..|+....... . +..... ... ....|.+++..++|++.+...++.|..||..+++.
T Consensus 469 -~Gl~~~~~~~~~~~------~------~~~~~~------~~~--~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 469 -AGVFVIDLASKKVI------H------HYDTSN------SQL--LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp -TEEEEEESSSSSCC------E------EECTTT------SSC--SCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE
T ss_pred -CceEEEeCCCCeEE------e------cccCcc------ccc--ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE
Confidence 45666764321110 0 000000 000 24678999999999877766555588899876554
Q ss_pred EEEecC----CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC----CCcceeEEEecCCcceeeeecCC
Q 002264 865 MTTFMS----PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 865 ~~~~~~----h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
. .+.. ....|.++...+ +|.+.+ |+.+|.|..||..+++. ..+.. ....|.++...++|.+.+++ ..
T Consensus 528 ~-~~~~~~~l~~~~i~~i~~d~-~g~lWi-~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~ 602 (781)
T 3v9f_A 528 R-KFNQYEGFCSNTINQIYRSS-KGQMWL-ATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NT 602 (781)
T ss_dssp E-EECTTTTCSCSCEEEEEECT-TSCEEE-EETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SS
T ss_pred E-EccCCCCCCCCeeEEEEECC-CCCEEE-EECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CC
Confidence 3 3321 234689999988 776554 44577658999877653 23321 22468889888898877754 44
Q ss_pred ceEEEEe
Q 002264 937 AQVTLCV 943 (945)
Q Consensus 937 g~i~vWd 943 (945)
| |..+|
T Consensus 603 G-l~~~~ 608 (781)
T 3v9f_A 603 G-ISCYI 608 (781)
T ss_dssp C-EEEEE
T ss_pred c-eEEEE
Confidence 5 44444
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=1.5e-09 Score=113.82 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=154.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
..-..+..|+|+++.++++...++.|..||..+++... + .....+.+++++++|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999777788888888999999998765421 1 13457999999999996554
Q ss_pred EECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEE-eC----------CCcEEEEeCCCceEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTC-GD----------DKLIKVWELSGRKLFNF 490 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~-s~----------d~~i~vwd~~~~~~~~~ 490 (945)
. ++.|.+||.++++... +.... .....+.+++++|+|+ ++++. +. .+.|..++..++... +
T Consensus 71 -~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp -E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred -E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 5679999998765322 11111 1234588999999998 45543 22 123444444454333 3
Q ss_pred cCCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEcc--CCCee-----EEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 491 EGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR-----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.......+.++|++ +++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|+..++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33444568889877 45555 555668899999974 33221 112222346788999999976666542
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEc-CCCCEEEEEEC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 605 (945)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999888876644 68889998 88888777664
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=7.1e-10 Score=121.52 Aligned_cols=238 Identities=11% Similarity=0.031 Sum_probs=158.2
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..+..++|+|+|+ |+++...++.|++||..++.... +.... .... ++|+++++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~-------------------~~~~~-~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTT-------------------VHPGF-KGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEE-------------------EEETC-CBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEE-------------------eeccC-CCCc-eeEecCCCcEEEE
Confidence 4789999999998 78887778999999998765432 11111 2233 9999999999988
Q ss_pred ECCC--cEEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-----cCCCC
Q 002264 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-----EGHEA 495 (945)
Q Consensus 425 ~~dg--~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-----~~~~~ 495 (945)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.|| ..+. ...+ .++..
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLG 265 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCC-EEEEecccccCCCC
Confidence 8766 788888876544332111112 446678999999555 344466788999999 4444 3333 22222
Q ss_pred CE--EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------------CeEEEEEEcCCCCEEEEEee
Q 002264 496 PV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------HWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 496 ~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~~ 558 (945)
.- ..++|+|. ++.++++...++.|+.|+.+.. ...+.... .....++++++|+.+++-.
T Consensus 266 ~~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~- 341 (409)
T 3hrp_A 266 TNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG- 341 (409)
T ss_dssp CSSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-
T ss_pred CCccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-
Confidence 22 28898874 3466777777899999987643 22222221 3478999999999655543
Q ss_pred cCCCCceEEEEeCCCCceeeEecccc--------------CcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
.+++.|+.|++.++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 --~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 --FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp --TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred --CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02789999998777643 333320 124678999999766666667788887765
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=7e-10 Score=131.22 Aligned_cols=250 Identities=11% Similarity=0.039 Sum_probs=161.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEe----CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVGS----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
|...+..++|||||++++.+.+ ...+|++||+.+++.+.. .+ +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PL--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EE--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------cc--CCceeccEEEe-CC
Confidence 4457899999999997544433 335799999999875421 01 11113568999 99
Q ss_pred CEEEEEECCCc-------------EEEEEccCCccc-ccceeecc-ccccEEEEEEecCCCeeEEEEEeC---CCcEEEE
Q 002264 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (945)
Q Consensus 419 ~~las~~~dg~-------------i~vwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~---d~~i~vw 480 (945)
+.|+.++.+.. |++|++.++..- ..+..... |...+.++.|+|||+. ++++.+. ++.|.++
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEE
Confidence 99999988743 999999876432 11112233 4556789999999996 3333332 3589999
Q ss_pred e-CCCc-eEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCe--eEEecCCCCeEEEEEEcCCCCEE
Q 002264 481 E-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 481 d-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
| .++. ....+..+....... +.+. ++.+++....+ +.|..+|+.++.. ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4442 455666666655554 4443 23455554443 6799999987654 233444444443 889999998
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC----CcEEEEECCCCeeE
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (945)
+.... .++...|++||+..+. .+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 87765 2234479999987544 344433223346667778888777766544 78999999887643
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.4e-09 Score=119.13 Aligned_cols=238 Identities=9% Similarity=0.047 Sum_probs=160.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEe-CC
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LS 483 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd-~~ 483 (945)
.....|+|+++|+++++...++.|++||.+++.... .... ..... ++|+++++ .++++..++ .|.+|+ ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 468899999999988877778899999998765432 1222 22233 99999999 677777655 788999 54
Q ss_pred CceEEEe----cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE----ecCCCCeE--EEEEEcCCCCEE
Q 002264 484 GRKLFNF----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWC--TTMLYSADGSRL 553 (945)
Q Consensus 484 ~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~s~~~~~l 553 (945)
+.....+ ......+.++++++. + ..|+.+..++.|+.||..+...... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-E-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-S-SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-C-CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 5443343 224456778888763 3 3455577788999999887654332 22221112 389999976666
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEecccc--------------CcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (945)
+.+.. ..+.|+.|+.... ...+.+.. -.....++++++|+++++-. .++.|+.|++.++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 65543 4778999987643 22333221 12367899999999777776 78999999988887
Q ss_pred eEEEeecCC------------CCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 619 ILTSTDAEG------------GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 619 ~~~~~~~~~------------~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
......... .......++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332200 0124678999999888888777888888765
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=2.4e-09 Score=112.30 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=153.7
Q ss_pred CCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 405 VPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 405 h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
+..--.+..|+|++. ++++...++.|..||..+++. . .+ .....+.+++++++|+ ++++. ++.|.+|| .
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~---~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q---RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E---EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E---EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 445567899999654 555666688999999988653 2 12 2456799999999998 55543 56899999 5
Q ss_pred CCceEEEecC----CCCCEEEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 483 SGRKLFNFEG----HEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 483 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
+++....... ....++.+++.+ +|+++++...+ ..-.+|.++...............+.++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 5543322211 123477888765 56666554322 23456655543333333333345678999999
Q ss_pred CCEEEEEeecCCCCceEEEEeC--CCCcee--e---EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNE--SEGTIK--R---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~--~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
++.++.+.. ..+.|..||+ .++... + .+.... .....++++++|+..++....+.|..||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876653 3678999986 455432 1 222222 2567899999998777777888999999999999888
Q ss_pred eecCCCCCCccEEEEc-CCCCEEEEEECC
Q 002264 623 TDAEGGLPNLPRLRFS-KEGNLLAVTTAD 650 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~s-p~g~~l~~~~~d 650 (945)
+..+.. .+++++|. |+++.|++++..
T Consensus 236 i~~p~~--~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLPVD--KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECSSS--BEEEEEEESGGGCEEEEEEBC
T ss_pred EECCCC--CceEEEEeCCCCCEEEEEcCC
Confidence 876643 68999998 888887776643
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=3.7e-09 Score=112.40 Aligned_cols=225 Identities=14% Similarity=0.054 Sum_probs=150.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
-..+.+|+|+++.+++++..++.|.+||..+++... + .....+.+++|+++|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 467889999877788888888999999988765321 1 123579999999999987764
Q ss_pred CCCcEEEEEccCCcccccceeec-c-ccccEEEEEEecCCCeeEEEEEeC------CCcEEEEeCCCceEEEecCCCCCE
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~l~~s~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
.+ .|.+||.++++... +.... . ....+.+++++|+|. ++++... .+.|..++ +++. ..+.......
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 44 49999998876422 11111 1 124689999999998 5554432 24555555 5443 3333333456
Q ss_pred EEEEeeecCCccEEE-EEEcCCeEEEEEcc--CC-Ce-----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 498 YSICPHHKENIQFIF-STAIDGKIKAWLYD--TM-GS-----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
..++|++ +++.++ +.+.++.|.+||++ ++ .. ...+.........+++.++|...++.. +.+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEE
Confidence 7888876 556554 44557899999986 44 21 112222344678899999998766654 2578999
Q ss_pred EeCCCCceeeEeccccCcceEEEEEc-CCCCEEEEEECC
Q 002264 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGED 606 (945)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d 606 (945)
||. +++.+..+..... .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 5777776665543 68889998 888877766543
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=3.4e-10 Score=133.90 Aligned_cols=244 Identities=11% Similarity=0.111 Sum_probs=158.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-----CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC---
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--- 475 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--- 475 (945)
+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666899999999999998543 235699999999875431 11 11113578999 999 566666553
Q ss_pred ----------cEEEEe-CCCc----eEEEecC-CCCCEEEEEeeecCCccEEEEEEc----CCeEEEEEccCCC-eeEEe
Q 002264 476 ----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVDY 534 (945)
Q Consensus 476 ----------~i~vwd-~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 534 (945)
.|++|+ .++. .+..... |.....++.|++ ||++|+.... +..|.++|+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 389999 4433 2332233 444567777766 6677654432 2489999987764 34444
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce--eeEeccccCcceEEEEEcCCCCEEEEEEC-CC--cE
Q 002264 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QI 609 (945)
Q Consensus 535 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i 609 (945)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+....+ .|+++++.|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEE
Confidence 4444444444 6778888777664322357899999988654 234544544333 78888988887764 43 68
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC----CcEEEEECCCCc
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIGL 662 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d----g~i~iw~~~~~~ 662 (945)
++|++.++. ...+.... ...+..+.++++++.++....+ +.+..||+.++.
T Consensus 353 ~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 999987554 44444332 2246677788888877766554 789999987763
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=3.3e-10 Score=121.63 Aligned_cols=271 Identities=12% Similarity=0.022 Sum_probs=172.0
Q ss_pred CcEEEEEEeCCCCeEEEEEe--CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 577753 2343666766544322 111111 01224667899999999998766
Q ss_pred EEEC-----CCcEEEEEccCCcccccceeec----cccccEEEEEEecCCCeeEEEEEe---CCCcEEEEe-CCCceEEE
Q 002264 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 423 s~~~-----dg~i~vwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~~~~~~~l~s~s---~d~~i~vwd-~~~~~~~~ 489 (945)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. .+++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988754422 121 23345789999987653 455555 678999999 67777666
Q ss_pred ecCCCCCEE-EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 490 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++++|||+.|+++.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 655432111 122333 456677777888876663 13678999999998888764 1335655
Q ss_pred EeCC---CCc-----eee--EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1112222 3456899999988888888999999998667654443322 22357899999
Q ss_pred CCCCEEEEEECCCc
Q 002264 639 KEGNLLAVTTADNG 652 (945)
Q Consensus 639 p~g~~l~~~~~dg~ 652 (945)
++|.++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 99887777654433
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=1.8e-09 Score=126.29 Aligned_cols=323 Identities=12% Similarity=0.056 Sum_probs=188.7
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCe-----------EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 46777778889999999999888877654320 112233 3556766654 889999999999998
Q ss_pred eEeccc-cC---cceE-EEEEcCCCCEEEEEEC------CCcEEEEECCCCeeEEEeecCCCC-----------------
Q 002264 578 RTYAGF-RK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL----------------- 629 (945)
Q Consensus 578 ~~~~~~-~~---~~~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 629 (945)
-.+... .. ..+. ...+. +..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 877654 10 0111 11111 456666553 689999999999998877653221
Q ss_pred -------------CCccEEEEcCCCCEEEEEECCCc-------------------EEEEECCCCccccccccCCcccccc
Q 002264 630 -------------PNLPRLRFSKEGNLLAVTTADNG-------------------FKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 630 -------------~~v~~v~~sp~g~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
.....++++|++..++.++.++. |..+|..+++
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--------------- 294 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--------------- 294 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC---------------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC---------------
Confidence 01135778888888887776543 3333333221
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
.+|........ ....
T Consensus 295 -------------------------------------------------------------~~W~~~~~~~d----~wd~ 309 (677)
T 1kb0_A 295 -------------------------------------------------------------YKWHYQETPGD----NWDY 309 (677)
T ss_dssp -------------------------------------------------------------EEEEEESSTTC----CSCC
T ss_pred -------------------------------------------------------------EEEEEecCCCc----cccc
Confidence 11211100000 0000
Q ss_pred CCCCCCccceEEEEEecCC---CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccc------cccCCCccccc------
Q 002264 758 PESTDTSSKVVRLLYTNSA---VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ------HWLPSSGLLMA------ 822 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg---~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------ 822 (945)
. .......+....+| ..++.++.+|.++++|... |+.+...... -+| .++.++.
T Consensus 310 ~----~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t------G~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 310 T----STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN------GKFISAKNFVPVNWASGYD-KHGKPIGIAAARD 378 (677)
T ss_dssp C----CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT------CCEEEEEESSCCSSEEEEC-TTSCEEECGGGGC
T ss_pred c----cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC------CCEeccccccccCcccccC-CCCceeeccccCc
Confidence 0 01112223334466 5677777888888887543 3332221100 011 1222110
Q ss_pred -----ccccCCCcCCceeEEeecCCCceEEecC--------------------------------------------CCe
Q 002264 823 -----NDVAGVNLEEAVPCIALSKNDSYVMSAT--------------------------------------------GGK 853 (945)
Q Consensus 823 -----~~l~~~~~~~~i~~l~~s~dg~~la~~s--------------------------------------------d~~ 853 (945)
...++..-...-..++|+|++.++++.. .+.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 0011100001113678899887776642 167
Q ss_pred EEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCC-cceeEEEecCCcceeee
Q 002264 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVS 932 (945)
Q Consensus 854 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s 932 (945)
|..||+.+++.+.++. +..++....++. ++.++++++.||.+++||..+|+.+..+.... ....-+.|..+|+.++.
T Consensus 459 l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 459 LLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999988876 334455556666 66788889999999999999999999887443 23344566788875554
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=6.9e-10 Score=118.09 Aligned_cols=284 Identities=10% Similarity=-0.011 Sum_probs=174.4
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCeeEEEeecCCCC-----
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGGL----- 629 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~----- 629 (945)
.|.++|..+++.+.++..... + .+.++|+++.++++. .++.|.+||..+++.+..+...+..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999999999999886655 3 699999999999886 3688999999999999998764110
Q ss_pred CCccEEEEcCCCCEEEEEEC--CCcEEE--EECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 630 PNLPRLRFSKEGNLLAVTTA--DNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
.....++++|||++++++.. +..+.+ +|..+ ...+... .++.+.|+|+..+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~---------~~~~~~p~g~~~~------------ 178 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSA---------SCFHIHPGAAATH------------ 178 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECS---------SCCCCEEEETTEE------------
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECC---------CceEEccCCCeEE------------
Confidence 23578999999999999875 456888 88865 1222110 0122345554332
Q ss_pred cCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce-----eecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE-----IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
++.+.|+.+.+.++.. ........ ..++- ...+. + ++++..++
T Consensus 179 ------------------------~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~v---g~~P~---~-~~~~~~~~ 226 (368)
T 1mda_H 179 ------------------------YLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNC---SSQAA---Q-ANYPGMLV 226 (368)
T ss_dssp ------------------------ECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCB---CSCCE---E-ETTTTEEE
T ss_pred ------------------------EEEcCCCCEEEEECccccccCCeEEEEee-eeeeC---CCCcc---c-cccCCEEE
Confidence 1222233333333321 00000000 00000 11222 3 66666666
Q ss_pred EeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--C-------
Q 002264 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--G------- 851 (945)
Q Consensus 781 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d------- 851 (945)
..+. +.+.+.|+..... . .+..|............ .......++++||++.+.++. .
T Consensus 227 ~vs~-~~V~viD~~~~~~----~-----v~~~~~~~~~~~~~~~~----~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 227 WAVA-SSILQGDIPAAGA----T-----MKAAIDGNESGRKADNF----RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ECBS-SCCEEEECCSSCC----E-----EECCCCSSCTHHHHTTE----EECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred EEcC-CEEEEEECCCCcc----e-----EEEEEEecccccccccc----ccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 6666 8888887532110 0 01112222111000000 111223378999998777642 2
Q ss_pred -CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc-eEEEee-cCceEEEEecccceEEEEecCCCcceeEEEecC
Q 002264 852 -GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 925 (945)
Q Consensus 852 -~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~-~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 925 (945)
+.+.++|+.+++.+.++.... ....++|+| |++ ++++.. .++.|.|+|+.+++.+.++.... ....+++.+
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred CCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 356799999999988887433 589999999 676 566666 59999999999999999987553 344566554
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=1.2e-09 Score=115.01 Aligned_cols=238 Identities=10% Similarity=0.018 Sum_probs=157.2
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.....+.......+|+|+|++|++++..++.|..|+. +++.. .+..+...+..++++++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--------------------~~~~~~~~~~gl~~d~d 96 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--------------------VLLDATAFTNGNAVDAQ 96 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--------------------EEEESCSCEEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--------------------EEeCCCCccceeeECCC
Confidence 3344455678899999999988888888899999987 44321 12335567899999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEE----EeC-------------CCcEEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKV 479 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s----~s~-------------d~~i~v 479 (945)
|+++++...++.|.+|+.+ ++.........+. ...+.++++.++|. +++| |.. .+.|..
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEE
Confidence 9977766566789999986 4422111111111 23467899999998 6665 331 246777
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCee---EEecCCCCeEEEEEEcCC
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~ 549 (945)
|| .+++..... .......++|++ +++.|+.+... +.|.+|++...... ............+++.++
T Consensus 174 ~d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~ 249 (305)
T 3dr2_A 174 LPPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG 249 (305)
T ss_dssp ECSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT
T ss_pred EcCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC
Confidence 88 456544332 445567888876 55767766655 78999998754311 111112233456889999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
|+..++. .+.|.+|+. +++.+..+.... .+..++|+++++.|++++.++ ++.++
T Consensus 250 G~lwv~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 250 GWLWSSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SCEEECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCEEEec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 9954443 234999998 567776666544 467789999999898888754 44333
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=1e-09 Score=128.60 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcc-eeEEEecCCccee
Q 002264 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNIL 930 (945)
Q Consensus 852 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l 930 (945)
|.|..||+.+++.+.++..+. ++..-.++. .+.++++|+.||.++.||.++|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 679999999999998887543 333335566 5679999999999999999999999888754332 2456778888754
Q ss_pred ee
Q 002264 931 VS 932 (945)
Q Consensus 931 ~s 932 (945)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=2.3e-10 Score=121.89 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=132.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+..+++++.+. ++++|+.++ +++|++.+.+...... ...++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~---------~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSD---------STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSS---------SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccc---------cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 688888774 5569976543111000 00011111223566 999999 99999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+|| .++.... +...|++++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 45567788988887754 377788999999999 5555432 456899999988
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCe--eEEe------c---CCCCeEEEEEEcCCCCEEEEEee
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
+ | ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-+.
T Consensus 173 k--G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 S--Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp S--E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred C--c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 4 4 67899999999999887664 4444 2 25678999999999998887553
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=1.2e-09 Score=117.13 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=78.4
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------cCcceEEEEEcCCCCEEEEEEC-----CC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGE-----DS 607 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~-----dg 607 (945)
.....++++++|+.+++..... ++.+.+|.+.+++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--QPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--CCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCC--CCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 4678999999999888754211 22134444435543 223211 1125788999999875555433 57
Q ss_pred cEEEEECCCCeeEEEeecCC----CCCCccEEEEcCCCCEEEEE-E---CCCcEEEEECCCC
Q 002264 608 QIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEGNLLAVT-T---ADNGFKILANAIG 661 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~sp~g~~l~~~-~---~dg~i~iw~~~~~ 661 (945)
.|.+||+.+++.+..+..+. ....+..+++++++..++.+ . .++.|.+||+.++
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence 89999999999877776532 11246899999865555444 3 4788999999876
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=3.3e-09 Score=111.71 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=153.3
Q ss_pred ccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+..+.......+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEE
Confidence 334455678899999998 5566667889999987 443 22 3445667799999999998 66666666889999
Q ss_pred eCCCceEEEecCC-----CCCEEEEEeeecCCccEEEE----EEc-------------CCeEEEEEccCCCeeEEecCCC
Q 002264 481 ELSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 481 d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
+.+++.. .+..+ ...+.++++.+ +|.+.++ |.. .+.|..||..+++..... ..
T Consensus 113 ~~~g~~~-~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 113 DADGQAH-LLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp CTTSCEE-EEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred CCCCCEE-EEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 9556543 22211 12356677765 6677765 322 245666766555443332 33
Q ss_pred CeEEEEEEcCCCCEEEEEeecC--CCCceEEEEeCCCCcee--eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~--d~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
.....++|+||++.|+++.... .+.+.|+.|++..+... ..+..........++++++|+ +.+++.+ .|.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 4567899999999887765310 01268999998754411 112111122345688999998 4444444 4999998
Q ss_pred CCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+++.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 567777776543 478999999999998888764333
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=1.7e-08 Score=107.31 Aligned_cols=223 Identities=13% Similarity=0.024 Sum_probs=144.5
Q ss_pred cEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
...+++|+|++. ++++...++.|..||.++++.. .+. ....+.+++|+++|+ ++++. .+ .|.+|| .+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCc
Confidence 346789999755 5556666789999999876432 122 346799999999998 55544 34 499999 5665
Q ss_pred eEEEecCC-----CCCEEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 486 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
.. .+... ...+.++++++ +|+++++...+ +...+|.++++ ....+.........++|+||++.++.+
T Consensus 121 ~~-~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 121 LT-LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAKG-KVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EE-EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEETT-EEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EE-EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeCC-cEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 43 33221 23578888866 55665554322 22344444333 332222222346789999999988766
Q ss_pred eecCCCCceEEEEeCC--CC-ce-----eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 557 GTSKDGDSFLVEWNES--EG-TI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~--~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
.. .++.|.+||.. ++ .. ...+.... .....++++++|+..++...++.|.+|+. +++.+..+..+..
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 43 36789999985 55 32 12222222 24677899999987777767789999998 6777777765543
Q ss_pred CCCccEEEEc-CCCCEEEEEECC
Q 002264 629 LPNLPRLRFS-KEGNLLAVTTAD 650 (945)
Q Consensus 629 ~~~v~~v~~s-p~g~~l~~~~~d 650 (945)
.+.+++|+ ++++.|++++..
T Consensus 272 --~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 --QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp --BEEEEEEESTTSCEEEEEEBC
T ss_pred --CcEEEEEecCCCCEEEEEecC
Confidence 68999998 888877666543
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=4.5e-08 Score=106.62 Aligned_cols=309 Identities=10% Similarity=0.056 Sum_probs=179.7
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCC---------CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
..+++++.++.|..+|..+++......... ..+.+.. ..++..+++++. ++.|+.+|..+++.+..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~----~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSE----KAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcC----CCEEEEEECCCCCEEEE
Confidence 578888889999999999998887766532 2232221 123456666653 78999999999998766
Q ss_pred eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC---CccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
+..... ........ +..+++++.++.|+.+|..+|+.+.......... ........ +..+++++.++.+..+
T Consensus 129 ~~~~~~-~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGE-ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSC-CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeCCCc-eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 654332 11112222 4588889999999999999999888776543210 00122222 4567778889999999
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
|..++..... ..... +.+.. .
T Consensus 204 d~~tG~~~w~-~~~~~--------------~~~~~--------------------------------------------~ 224 (376)
T 3q7m_A 204 LMEQGQMIWQ-QRISQ--------------ATGST--------------------------------------------E 224 (376)
T ss_dssp ETTTCCEEEE-EECCC----------------------------------------------------------------
T ss_pred ECCCCcEEEE-Eeccc--------------CCCCc--------------------------------------------c
Confidence 9988733211 11000 00000 0
Q ss_pred CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCC
Q 002264 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (945)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (945)
.-++.++ ....+ + .+..++.++.++.+..+|... |+. +|...
T Consensus 225 ~~~~~~~-------------------~~~p~----~--~~~~v~~~~~~g~l~~~d~~t------G~~-------~w~~~ 266 (376)
T 3q7m_A 225 IDRLSDV-------------------DTTPV----V--VNGVVFALAYNGNLTALDLRS------GQI-------MWKRE 266 (376)
T ss_dssp -----CC-------------------CCCCE----E--ETTEEEEECTTSCEEEEETTT------CCE-------EEEEC
T ss_pred ccccccc-------------------CCCcE----E--ECCEEEEEecCcEEEEEECCC------CcE-------Eeecc
Confidence 0000000 00000 0 123355555566666665321 111 11111
Q ss_pred CcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecC-CCCCeeEEEeecCCCceEEEeecCc
Q 002264 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDS 895 (945)
Q Consensus 817 ~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~~~~~~lasg~~dg 895 (945)
......+... ++..++...++.|..+|..+++.+..... ....+...... + ..|++++.+|
T Consensus 267 --------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g 328 (376)
T 3q7m_A 267 --------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEG 328 (376)
T ss_dssp --------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTS
T ss_pred --------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCC
Confidence 1112333332 44444444478999999999998877762 22233444443 3 3677888899
Q ss_pred eEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 896 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
.|+++|..+|+.+.........+.+.... .+..|+.++.||.|+.||
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 99999999999888776533444332222 245677788899999887
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=1.6e-09 Score=115.34 Aligned_cols=267 Identities=7% Similarity=-0.057 Sum_probs=169.6
Q ss_pred eEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE--------
Q 002264 358 TLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-------- 425 (945)
Q Consensus 358 ~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-------- 425 (945)
++.++...++ +|.+.|..+++.+.. +-.+. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3455555444 888999999887743 12222 34 799999999998886
Q ss_pred --CCCcEEEEEccCCcccccceeecc-c----cccEEEEEEecCCCeeEEEEEeC--CCcEEE--Ee-CCCceEEEecCC
Q 002264 426 --TKHLIQLYSYAGSNDLRQHSQIDA-H----VGAVNDLAFAYPNKLLCVVTCGD--DKLIKV--WE-LSGRKLFNFEGH 493 (945)
Q Consensus 426 --~dg~i~vwd~~~~~~~~~~~~~~~-h----~~~v~~l~~s~~~~~~~l~s~s~--d~~i~v--wd-~~~~~~~~~~~~ 493 (945)
.++.|.+||..+++.+..+. +.+ . ......++|+|||+ +++.+.. +..+.+ +| .+ +..+..-
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk--~lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998776432 110 0 12356799999999 4555543 467888 88 44 4444321
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC----CCeeE-----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT----MGSRV-----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+. ..+.|.+. ..+++.+.||.+.+.|+.+ ..... .+.....+. . ++++..++..+ . +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs----~-~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV----A-S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB----S-S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc----C-C
Confidence 11 12334433 4556677888888888876 22211 011112233 3 56666666655 2 6
Q ss_pred eEEEEeCCCCc--eeeEeccc------cC---cceEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCeeEEEee
Q 002264 565 FLVEWNESEGT--IKRTYAGF------RK---KSNGVVQFDTTQNHFLAVGE---------DSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 565 ~i~iwd~~~~~--~~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 624 (945)
.+.+.|..+.. .+..+... .. .....++++++++.++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888886532 22222110 00 01122689999998887643 2356699999999998887
Q ss_pred cCCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCcccccccc
Q 002264 625 AEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (945)
... ....++|+|||+ .+++.. .++.|.++|+.++ +.++.+.
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 654 468999999998 456666 5899999999988 4444443
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.12 E-value=1.1e-09 Score=116.55 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=128.9
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc--------cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~--------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.++.+++++...++++|+.++ +++|+++.... .... ....+.. |+.++| |+. +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 689999999999999999986 66798764321 1111 1224666 999999 788 77777 7899999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+-........|...+.++.+.+ . .+++++.||.+.+||+..+.... ....|++++|+|+| ++.+.
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~- 179 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL- 179 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-
T ss_pred EEchhhhccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-
Confidence 99 55445555666778888876543 2 28889999999999998776543 23479999999999 44444
Q ss_pred cCCCCceEEEEeCCCCce--eeEec---------cccCcceEEEEEcCCCCEEEEEE
Q 002264 559 SKDGDSFLVEWNESEGTI--KRTYA---------GFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
+++.+++|+...++. ..++. ++. ..+.++.|.+++.++++-+
T Consensus 180 ---~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 ---KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ---TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEEEE
T ss_pred ---cCCcEEEEcCCCccccccceecCCcccccccCCC-eeEEEEEEecCCeEEEEEc
Confidence 389999999887775 55562 133 4688999999888877644
No 232
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.11 E-value=9.6e-06 Score=93.16 Aligned_cols=459 Identities=11% Similarity=-0.003 Sum_probs=237.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
..-..+..++|++.+.++..+-...+.|..+++....... .++...-.....+++.+.+..|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------------------~v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------------------NVVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE------------------EEECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------------------EEEeCCCCCcCeEEEEecCCEE
Confidence 3455789999999877666665556788888876542110 1122222468899999966655
Q ss_pred EEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEec-CCCCCEE
Q 002264 422 GVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFE-GHEAPVY 498 (945)
Q Consensus 422 as~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~-~~~~~v~ 498 (945)
..+ ...+.|.+.++++... +. .+...-.....|++.|.+.. +++|- +..+.|...+.+|.....+. ..-...+
T Consensus 99 y~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence 554 4578899999876432 21 12233445778999998663 33433 22456666666666544443 2344578
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
.+++.+.. +.+.++-...+.|...|++.................+++..+ .++.+-. +.+.|...|..+++...
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCE
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccE
Confidence 89987643 355555556678888888654433322212222345666544 5555432 36678888876665333
Q ss_pred EeccccC------------------------cceEEEEE-----------cCCC--------------CEEEEEECCCcE
Q 002264 579 TYAGFRK------------------------KSNGVVQF-----------DTTQ--------------NHFLAVGEDSQI 609 (945)
Q Consensus 579 ~~~~~~~------------------------~~~~~~~~-----------~~~~--------------~~l~~~~~dg~i 609 (945)
.+..... .....+++ .|.| ..++.-+..+.|
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i 328 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence 2211000 00000111 1111 112222233456
Q ss_pred EEEECCCCeeE-EEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 610 KFWDMDNVNIL-TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 610 ~iwd~~~~~~~-~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
+..++...... ..+... ....+.+++|++.+..|+.+. ..+.|+.+++..... ....... -.....+++..
T Consensus 329 ~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~-----~~~p~GlAvD~ 401 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQ-----IAHPDGIAVDW 401 (619)
T ss_dssp EEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-----CSCCCEEEEET
T ss_pred EEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECC-----CCCcCceEEec
Confidence 66666544321 112221 123467889998655655554 467888888865321 1111100 01244567765
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
.+..|+ ++....+.|.+.++.. .....+ ... .....
T Consensus 402 ~~~~lY------------------------------------~tD~~~~~I~v~~~~G----~~~~~l-~~~---~l~~P 437 (619)
T 3s94_A 402 VARNLY------------------------------------WTDTGTDRIEVTRLNG----TMRKIL-ISE---DLEEP 437 (619)
T ss_dssp TTTEEE------------------------------------EEETTTTEEEEEETTS----CSCEEE-ECT---TCCSE
T ss_pred ccCcEE------------------------------------EEeCCCCcEEEEeCCC----CeEEEE-EEC---CCCCe
Confidence 444443 2222224444444432 111111 111 33567
Q ss_pred EEEEEecCCCeEEEeeec--CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 768 VRLLYTNSAVGLLALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
.++++.|....|..+... +.|.-.+++ | ......... .-.....+++++++..
T Consensus 438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~d-------G----------------~~~~~l~~~--~l~~P~GlalD~~~~~ 492 (619)
T 3s94_A 438 RAIVLDPMVGYMYWTDWGEIPKIERAALD-------G----------------SDRVVLVNT--SLGWPNGLALDYDEGK 492 (619)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETT-------S----------------CSCEEEECS--SCSCEEEEEEETTTTE
T ss_pred eeEEEEcCCCcEEEecCCCCCEEEEEccC-------C----------------CccEEEEeC--CCCCCeeeEEcccCCE
Confidence 899999975555555432 334333221 1 100000111 2345778999987777
Q ss_pred EEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce
Q 002264 846 VMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (945)
Q Consensus 846 la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~ 906 (945)
|..+. .++|..++++.......+...-.....|++.. +.+..+=...+.|...|..+|.
T Consensus 493 LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 493 IYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred EEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 76665 46799999864433222222233345667664 3555555566778888877763
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.10 E-value=1e-07 Score=103.70 Aligned_cols=184 Identities=10% Similarity=0.064 Sum_probs=117.6
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCC---------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH---------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
.++.++.++.|..+| .+|+.+..+... ...+.+... . ++..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-V--SGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-E--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-E--eCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 577788889999999 789988666542 122322211 1 235788889999999999999988877665
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc----eEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
........... +..+++++. ++.|..+|..+++.+..+....... ....... +..+++++.++.|..+
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 43322122222 345666553 7899999999999887765432210 0112222 4578888889999999
Q ss_pred ECCCCeeEEEeecCCCCC-----CccEEEEcC--CCCEEEEEECCCcEEEEECCCC
Q 002264 613 DMDNVNILTSTDAEGGLP-----NLPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~~~-----~v~~v~~sp--~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|..+++.+.......... .+..+...| .+..+++++.++.+..+|..++
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 999999887765432100 000011111 3467777788889999988777
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=9.6e-09 Score=120.41 Aligned_cols=306 Identities=13% Similarity=0.085 Sum_probs=184.7
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccE-EEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
|++++.++.|.-+|..+|+.+ |......... ...... ..+ ..++. ++..|++++.|+.|..+|.++
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~---~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLI-------WKYDPQSDRH---RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEE-------EEECCCCCGG---GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCcee-------EEEcCCCCcc---ccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 667777899999999999876 3322110000 000000 000 11122 366788888999999999999
Q ss_pred Ccccccceeecccc---ccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-CCCceEEEecCCC--------------
Q 002264 438 SNDLRQHSQIDAHV---GAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHE-------------- 494 (945)
Q Consensus 438 ~~~~~~~~~~~~h~---~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~~~~~~~~~~-------------- 494 (945)
|+.+-..... .+. ..+.+--...++. +++..+ .++.|..|| .+|+.+..+....
T Consensus 141 G~~~W~~~~~-~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDTR-ADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEECC-SCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecCc-CCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 9876432211 011 1111100111443 333322 378999999 8999887765210
Q ss_pred -----------------CCEEEEEeeecCCccEEEEEEcCCe-------------------EEEEEccCCCeeEEecCCC
Q 002264 495 -----------------APVYSICPHHKENIQFIFSTAIDGK-------------------IKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 495 -----------------~~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 538 (945)
.....+++.+ ++.+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0011344544 4467888887764 9999999999988775421
Q ss_pred C---------eEEEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeEeccccC---------------------
Q 002264 539 H---------WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK--------------------- 585 (945)
Q Consensus 539 ~---------~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 585 (945)
+ .........+|+ .++.+. .++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAP----KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEEC----CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 122222223554 455554 489999999999998743221100
Q ss_pred -----------------cceEEEEEcCCCCEEEEEEC-------------------------------------------
Q 002264 586 -----------------KSNGVVQFDTTQNHFLAVGE------------------------------------------- 605 (945)
Q Consensus 586 -----------------~~~~~~~~~~~~~~l~~~~~------------------------------------------- 605 (945)
..-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 00112678888888887632
Q ss_pred --CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 606 --DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 606 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
+|.|+.||+.+++.+..+..+. ++..-.+...+.++++++.||.++.||.++++. +..+..... .. ...+
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~-~~---~~p~ 523 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASG-VM---AAPV 523 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSC-CC---SCCE
T ss_pred CcceeEEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCC-cc---cCce
Confidence 3779999999999988887653 234446666788999999999999999999944 333332211 11 2336
Q ss_pred eecccccceec
Q 002264 684 ALKVSASSAVS 694 (945)
Q Consensus 684 ~~s~~g~~l~~ 694 (945)
.+..+|+..++
T Consensus 524 ty~~~G~qyv~ 534 (689)
T 1yiq_A 524 TYSVDGEQYVT 534 (689)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 67788876543
No 235
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.07 E-value=6.1e-05 Score=86.59 Aligned_cols=466 Identities=10% Similarity=-0.018 Sum_probs=245.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
.-..+..++|++.+..+..+-..++.|..+++....... ++...-.....+++.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 345789999999877767776677899988886543211 1111223567899987666554
Q ss_pred EE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEecCCCCCEEEE
Q 002264 423 VA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~v~~~ 500 (945)
.+ ...+.|.+.++++... +. .+...-....+|++.|.... ++++- +..+.|...+.+|.....+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 44 4567899999876432 21 12233455789999996663 33333 33567777777666555544445567889
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
++.+.. +.+.++-...+.|..+|++...... +.........+++.. ..++.+-. ..+.|...|..+++....+
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 987643 3455555667889999987654432 222233445677654 34544432 3677888887666433332
Q ss_pred ccccCc-----------------------ceEEEEE-cCCCCE-----------------------EEEEECCCcEEEEE
Q 002264 581 AGFRKK-----------------------SNGVVQF-DTTQNH-----------------------FLAVGEDSQIKFWD 613 (945)
Q Consensus 581 ~~~~~~-----------------------~~~~~~~-~~~~~~-----------------------l~~~~~dg~i~iwd 613 (945)
...... ....+++ .|.+.+ ++.+ ....|+-..
T Consensus 245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~ 323 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMV 323 (628)
T ss_dssp ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEEEC
T ss_pred ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEEEe
Confidence 211000 0000111 111111 1111 112233222
Q ss_pred CCCCee-EEEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCccccccccCCc-cccccCcceeeeeccccc
Q 002264 614 MDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPP-FEALRTPIESVALKVSAS 690 (945)
Q Consensus 614 ~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~s~~g~ 690 (945)
+..... ...+... ....+..++|++....|+.+.. .+.|+.++..... ....+.... ..........+++...++
T Consensus 324 l~~~~~~~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-~~~v~~~~~~~~~~~~~p~glAvD~~~~ 401 (628)
T 4a0p_A 324 IDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-GFTVVVSSVPSQNLEIQPYDLSIDIYSR 401 (628)
T ss_dssp CCTTCCCCEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--------CCCEEEEEEETTTT
T ss_pred cccccCceEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-ceEEEEcccccccccCCcceEEeeccCC
Confidence 222110 1111111 1234678899986666665554 5678888775431 111111100 000012355677777766
Q ss_pred ceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEE
Q 002264 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (945)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 770 (945)
.|+ ++.+..+.|.+.++.. .....-+.. ......++
T Consensus 402 nLY------------------------------------~td~~~~~I~v~~~~G-----~~~~~l~~~---~l~~Pr~i 437 (628)
T 4a0p_A 402 YIY------------------------------------WTCEATNVINVTRLDG-----RSVGVVLKG---EQDRPRAV 437 (628)
T ss_dssp EEE------------------------------------EEETTTTEEEEEETTS-----CEEEEEEEC---TTCCEEEE
T ss_pred eEE------------------------------------EEcCCCCEEEEEECCC-----CeEEEEEeC---CCCceeeE
Confidence 553 2222234444444431 111111111 33567899
Q ss_pred EEecCCCeEEEeeecCe-EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec
Q 002264 771 LYTNSAVGLLALGSNGV-QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (945)
Q Consensus 771 ~~s~dg~~l~~~~~dg~-i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~ 849 (945)
++.|...+|..+..... -+||.... +| ......... .-...+.++++++++.|..+
T Consensus 438 avdp~~g~ly~tD~g~~~~~I~r~~~-----dG----------------~~~~~l~~~--~l~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 438 VVNPEKGYMYFTNLQERSPKIERAAL-----DG----------------TEREVLFFS--GLSKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEET-----TS----------------CSCEEEECS--SCSCEEEEEEETTTTEEEEE
T ss_pred EEecCCCeEEEeecCCCCCeEEEEeC-----CC----------------CCcEEEEec--cCCCccEEEEeCCCCEEEEE
Confidence 99995544554443322 24443321 11 111100111 23456889999987777666
Q ss_pred C--CCeEEEEeccCceEEEEec-CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe
Q 002264 850 T--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 850 s--d~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
. .+.|...+++... ..++. ........|++.. +.+..+=...+.|...|..+|+....+
T Consensus 495 D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 495 DSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp ETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred eCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 5 4779999986433 33433 3334567788764 455555556678888887776544333
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=6.5e-09 Score=110.99 Aligned_cols=291 Identities=11% Similarity=0.030 Sum_probs=177.5
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 589 (945)
.+..++.++.|..|| .+++...........+.++...+++... +++ .+ |..+|. +++....+..... ...
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t-----~~-l~~~d~-~g~~~~~~~~~~~-~~~ 101 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGS-----DK-VYAINP-DGTEKWRFDTKKA-IVS 101 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSS-----CE-EEEECC-CGGGGGGSCC------C
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-Eec-----Cc-EEEECC-CCcEEEEEECCCC-ccc
Confidence 566777888888999 7777666555444456777777777544 443 33 888886 6655444332222 222
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccc
Q 002264 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
...+. +..+++++.++.|+.+|.. ++.......... .+.++...++|. +..++.++.|..+|.. +.. .....
T Consensus 102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~-~~~~~ 173 (330)
T 3hxj_A 102 DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE-KWRFK 173 (330)
T ss_dssp CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-SCE-EEEEE
T ss_pred CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE-eEEEe
Confidence 23333 5678888889999999998 777666654432 567777777776 5557777889999876 421 11111
Q ss_pred CCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC
Q 002264 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (945)
Q Consensus 670 ~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 749 (945)
..
T Consensus 174 ~~------------------------------------------------------------------------------ 175 (330)
T 3hxj_A 174 TN------------------------------------------------------------------------------ 175 (330)
T ss_dssp CS------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred CcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 750 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
...+.++.+.++|...+. + +.+..++ . .+... |... .
T Consensus 176 --------------~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~------~g~~~-------~~~~----------~-- 212 (330)
T 3hxj_A 176 --------------DAITSAASIGKDGTIYFG-S--DKVYAIN-P------DGTEK-------WNFY----------A-- 212 (330)
T ss_dssp --------------SCCCSCCEECTTCCEEEE-S--SSEEEEC-T------TSCEE-------EEEC----------C--
T ss_pred --------------CCceeeeEEcCCCEEEEE-e--CEEEEEC-C------CCcEE-------EEEc----------c--
Confidence 001112223334442222 2 4444443 1 11111 1110 0
Q ss_pred cCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEE
Q 002264 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~ 909 (945)
....+.+++++++|.+++...++.|..+|. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|. +++.+.
T Consensus 213 ~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 213 GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEE
Confidence 234577788888887776666788888884 5666666665544456666665 55 5667888888999995 787777
Q ss_pred EecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 910 KLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 910 ~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.+......+.++...++|..++ ++.+|.+++...
T Consensus 289 ~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~ 322 (330)
T 3hxj_A 289 NFETGSWIIATPVIDENGTIYF-GTRNGKFYALFN 322 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC
T ss_pred EEEcCCccccceEEcCCCEEEE-EcCCCeEEEEec
Confidence 7765666778888878876555 888998887653
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=8.9e-09 Score=113.52 Aligned_cols=258 Identities=15% Similarity=0.103 Sum_probs=163.9
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE-c-CCCCEEEEEE------------------CCCc
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-D-TTQNHFLAVG------------------EDSQ 608 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~------------------~dg~ 608 (945)
||++++++.. .+..|.+.|+.+.+..+.+.-........+++ + |+++++++++ .++.
T Consensus 100 DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 8899888653 36789999999999888554433335677887 5 9999999985 2457
Q ss_pred EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccc
Q 002264 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~ 688 (945)
+.+.|..+.+....+...+. -..++++|+|+++++.+.+.. .+ ..+....... .
T Consensus 177 vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se-------~~-~~i~~~~~~~-------~-------- 230 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSE-------KG-MTLPEMTAAE-------M-------- 230 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTT-------CC-SSHHHHTCCS-------E--------
T ss_pred EEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcc-------cC-cchhhccccc-------c--------
Confidence 99999999999988876542 367889999999999987632 11 0000000000 0
Q ss_pred ccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceE
Q 002264 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (945)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 768 (945)
..+.+.+.....
T Consensus 231 -----------------------------------------------d~v~V~~~~~~~--------------------- 242 (595)
T 1fwx_A 231 -----------------------------------------------DHIVVFNIAEIE--------------------- 242 (595)
T ss_dssp -----------------------------------------------EEEEEEEHHHHH---------------------
T ss_pred -----------------------------------------------ceEEEeecccee---------------------
Confidence 111111111000
Q ss_pred EEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEe
Q 002264 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (945)
Q Consensus 769 ~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~ 848 (945)
.+.++|++... +.+.+.|..... +..+...++ ......++.+||||+++++
T Consensus 243 --~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 243 --KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp --HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEEE
T ss_pred --EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEEE
Confidence 01122332221 235555432100 111000111 2345678999999999988
Q ss_pred cC--CCeEEEEeccCce------------EEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc----------
Q 002264 849 AT--GGKISLFNMMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---------- 904 (945)
Q Consensus 849 ~s--d~~i~iwd~~~~~------------~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~---------- 904 (945)
++ +++|.++|+.+.+ ....+. -......++|+| +|...++..-|++|.+||+.+
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 87 6789999999753 344444 234579999999 786666778899999999987
Q ss_pred ceEEEEecCCCcce-----eEEEecCCcceeeeec
Q 002264 905 DEVKSKLKGHQKRI-----TGLAFSTSLNILVSSG 934 (945)
Q Consensus 905 ~~~~~~l~~h~~~V-----~~l~~s~dg~~l~s~~ 934 (945)
.+.+..+..|-.+- .++.++|||++|+++.
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 56777777664432 2345689999999864
No 238
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.04 E-value=3.3e-05 Score=88.68 Aligned_cols=470 Identities=8% Similarity=-0.007 Sum_probs=235.5
Q ss_pred CCCcEEEEEccCCc-ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce--EEEecCCCCCEEEEEe
Q 002264 426 TKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICP 502 (945)
Q Consensus 426 ~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~v~~~~~ 502 (945)
....|+..++.+.. ... .+...-..+..++|++.+.. ++++-...+.|..++.+|.. ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 35668888887642 111 12223445789999997774 44555557788888855542 2333333356888998
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
.+. +++++++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..... ..+..
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~-~~l~~ 167 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR-FIIIN 167 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSC-EEEEC
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCce-EEEEe
Confidence 764 33566666678899999987655444433344456789999987766665431 145677777653332 22222
Q ss_pred ccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..-.....+++++++..|+.+. ..+.|..+++............ ......+++..+ ...++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2223567899999877777765 5678999998765544333211 112367788665 34444445678999998877
Q ss_pred ccccccccCCccccccCcceee-eecccccceec-cC--CCCCcc-ccccCCCCC-CCcccCCCCCccCCC--------C
Q 002264 662 LRSLRAVENPPFEALRTPIESV-ALKVSASSAVS-SG--TPANCK-VERSSPVRP-SPIINGVDPTSRSMD--------K 727 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v-~~s~~g~~l~~-~~--~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 727 (945)
... ..+..... .+ ..+ .+.+..+-... .+ ..+.|. +=...+... ............+++ .
T Consensus 245 ~~~-~~i~~~~~----~p-~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 245 EGL-REIHSDIF----SP-MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp CCC-EECCSCCC----CC-SEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred ccc-EEEecCCC----CC-cEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 432 22211110 01 111 12221110000 00 000000 000000000 000000000111111 1
Q ss_pred CccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceee
Q 002264 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATA 806 (945)
Q Consensus 728 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~ 806 (945)
+++.+ ..+.|+..++... ....+.++- .....+.+++|.+.+..|..+.. .+.|+-+++....
T Consensus 319 ~Ll~~-~~~~i~~i~l~~~----~~~~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------- 382 (619)
T 3s94_A 319 LLLLA-RRTDLRRISLDTP----DFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------- 382 (619)
T ss_dssp EEEEE-ESSCEEEEESSST----TCCCEECCC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------
T ss_pred EEEEE-cccceEEEecCCC----ccceeEEec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---------
Confidence 11111 2234444443321 111111111 02345778999986666665543 5667666532110
Q ss_pred eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEeecCC
Q 002264 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (945)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~ 884 (945)
. ...+.. .......+|+...+..|..+. .+.|.+.+++.......+...-.....|++.|..
T Consensus 383 -------------~-~~v~~~--~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~ 446 (619)
T 3s94_A 383 -------------S-QFVVTA--QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMV 446 (619)
T ss_dssp -------------C-EEEECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTT
T ss_pred -------------c-EEEEEC--CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCC
Confidence 0 000111 224567899987555555444 5779999987543322233334568999999944
Q ss_pred CceEEEeec-CceEEEEecccceEEEEecCCCcceeEEEecCCcceeeee-cCCceEEEEec
Q 002264 885 NNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQVTLCVE 944 (945)
Q Consensus 885 ~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-~~Dg~i~vWdl 944 (945)
|.+..+-.. .+.|...++............-....+|++.+++..|..+ +..+.|...++
T Consensus 447 G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 447 GYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred CcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 544444322 3567766665433222223334567789999865555444 44456666554
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=2.6e-08 Score=116.53 Aligned_cols=307 Identities=12% Similarity=0.074 Sum_probs=186.6
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~ 439 (945)
|++++.++.|.-+|..+|+.+ |................+ .....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEE-------EEEcCCCCcccccccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 666777899999999999876 322211100000000000 00011222 46788888899999999999998
Q ss_pred ccccceeecc--ccccEEEEEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEEecCCCCC--------------
Q 002264 440 DLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAP-------------- 496 (945)
Q Consensus 440 ~~~~~~~~~~--h~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~~~~~~~~-------------- 496 (945)
.+-....-.. ....+.+--...++. ++.++ .++.|+.+| .+|+.+.++......
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred EEeeecCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence 7653221100 001121111112333 34443 278999999 899998777542211
Q ss_pred ------------------EEEEEeeecCCccEEEEEEcCC-------------------eEEEEEccCCCeeEEecCCCC
Q 002264 497 ------------------VYSICPHHKENIQFIFSTAIDG-------------------KIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 497 ------------------v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~ 539 (945)
...+++.+ ++..++.++.++ .|..+|.++++....+....+
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~--~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDA--ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred ccccccCceeEeCCCcccccceeEcC--CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 12344544 446777776664 599999999998887654221
Q ss_pred ---------eEEEEEEcCCC---CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc----------c----------
Q 002264 540 ---------WCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK----------S---------- 587 (945)
Q Consensus 540 ---------~i~~~~~s~~~---~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~----------~---------- 587 (945)
....+....+| +.++.++ .++.++++|..+|+.+..+...... .
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 380 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAP----KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS 380 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEEC----CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence 12223333467 4566655 4899999999999987665422100 0
Q ss_pred --------------eEEEEEcCCCCEEEEEECC-------------------------------------------CcEE
Q 002264 588 --------------NGVVQFDTTQNHFLAVGED-------------------------------------------SQIK 610 (945)
Q Consensus 588 --------------~~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~ 610 (945)
-..++++|++..+++...+ |.|.
T Consensus 381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 460 (677)
T 1kb0_A 381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL 460 (677)
T ss_dssp SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence 0146889988888886432 7799
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
.||+.+++.+..+.... ++....+..++..+++++.||.+++||..+++. +..+..... . ....+.+..+|+
T Consensus 461 A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~-~---~~~p~~y~~~G~ 532 (677)
T 1kb0_A 461 AWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTG-V---VAAPSTYMVDGR 532 (677)
T ss_dssp EEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSC-C---CSCCEEEEETTE
T ss_pred EEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeeeCCCC-c---ccCCEEEEeCCE
Confidence 99999999988886543 345556777888999999999999999999943 333332211 1 123355667887
Q ss_pred cee
Q 002264 691 SAV 693 (945)
Q Consensus 691 ~l~ 693 (945)
..+
T Consensus 533 ~~v 535 (677)
T 1kb0_A 533 QYV 535 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=3.8e-08 Score=104.57 Aligned_cols=239 Identities=14% Similarity=0.122 Sum_probs=151.6
Q ss_pred EEe--CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccC-CCccEEEEEEcCCCCEEEEEECC
Q 002264 351 DFH--PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 351 ~fs--p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~i~~s~~g~~las~~~d 427 (945)
.++ +++++++++|..++.|.|+|+.+..... +-.++.+. ..+... ....-..+..+|+| +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie~--------~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIEP--------EEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEECH--------HHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeech--------hhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 447 8999988899999999999987542110 00011000 001101 11245678889999 76666555
Q ss_pred ------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-------------------CCCcEEEEe-
Q 002264 428 ------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-------------------DDKLIKVWE- 481 (945)
Q Consensus 428 ------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-------------------~d~~i~vwd- 481 (945)
|.|.++|.++++.+.....-.+-..--+.+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 7899999999887663321111122344688999999 777774 368999999
Q ss_pred CCCceEEEecCC--CCCEEEEEeeecCCccEEEEEE------cCCeEEEEEccCCCeeE--Ee--cC-------C-----
Q 002264 482 LSGRKLFNFEGH--EAPVYSICPHHKENIQFIFSTA------IDGKIKAWLYDTMGSRV--DY--DA-------P----- 537 (945)
Q Consensus 482 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~--~~--~~-------~----- 537 (945)
.+++.+.++... ......+.|.+++++++++.++ .+++|.+|..+.+.... .+ .. .
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 677777776642 1234556664455777777776 46688777665432111 11 00 0
Q ss_pred ----CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---CceeeEeccccC---------c----ceEEEEEcCCC
Q 002264 538 ----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQFDTTQ 597 (945)
Q Consensus 538 ----~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~~~~~~~~~~~ 597 (945)
......+.+++||++|+++.. +.+.|.+||+.. .+.+..+..... . ....+.++|+|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG 392 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG 392 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred cccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence 234678999999999998875 578999999863 344444433200 0 24668999999
Q ss_pred CEEEEEE
Q 002264 598 NHFLAVG 604 (945)
Q Consensus 598 ~~l~~~~ 604 (945)
++|+++.
T Consensus 393 k~LyVaN 399 (462)
T 2ece_A 393 RRVYVTN 399 (462)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9999887
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=2.9e-08 Score=105.88 Aligned_cols=266 Identities=11% Similarity=0.040 Sum_probs=169.8
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...+.++...++|. |..|+.+ |..+|. +++.... . ..+........+. +..|..
T Consensus 59 ~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~-------~------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWR-------F------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGG-------S------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEE-------E------------ECCCCcccCceEE--CCEEEE
Confidence 34567788888885 4555544 888885 5554321 1 1111112222333 556777
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEee
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
++.++.|..+|.+ ++... ....+...+.++...+++. +..++.++.|..+|..++.+..+......+.++.+.
T Consensus 113 ~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp ECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC
T ss_pred EecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEc
Confidence 8888999999988 65433 2333444566677777776 555777899999994488777766555556655543
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
.++. ++.++ +.+..+| .++............+.++...++|...+... ++.+..+|. +++....+...
T Consensus 186 --~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 --KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp --TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEECS
T ss_pred --CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeCC
Confidence 3444 44555 8888999 66666666666656677888888886555432 667888874 55555555443
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.. ....+.+.+++ .+++++.+|.|..+|. +++.+..+.... ..+.++...++|. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 33345555444 6778888889999996 677776666543 2577888878876 55688899999887653
No 242
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.97 E-value=0.00016 Score=83.09 Aligned_cols=486 Identities=10% Similarity=-0.006 Sum_probs=247.9
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg~i~vwd~~ 436 (945)
+||++ ..+.|+..++.+...... +....-..+..++|++.+..|..+ ..++.|..++++
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 45554 357888899876432210 011123467899999976666555 457889999887
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEEE-
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFST- 514 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~- 514 (945)
+... .. .+.........+++.+.+.. ++++-...+.|.+.+.+|.....+. ..-.....+++.|. +|.++++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 12222245778999887764 4556666788999996665443332 34455788998875 33444443
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEc
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 594 (945)
+..+.|...+++........ ........++++++++.|+.+-. +.+.|..+|+..... ..+..... ....+++.
T Consensus 143 g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~ 216 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQY 216 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEE
Confidence 23567877877655443333 34456789999999888887754 477899999865433 33332222 34556665
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEE-EcCCCCEEEEEECCCcEEEEECCCCccccccccCCc
Q 002264 595 TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR-FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672 (945)
Q Consensus 595 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (945)
. ..++... ..+.|...|..+++....+...-. ....+. +++..+. +.+ ++..
T Consensus 217 ~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~----~~n------------~C~~------ 270 (628)
T 4a0p_A 217 Q--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS----GWN------------ECAS------ 270 (628)
T ss_dssp T--TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC----CCC------------TTTT------
T ss_pred C--CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc----cce------------Eecc------
Confidence 4 3555544 578888888877766655543221 223332 2221110 000 0000
Q ss_pred cccccCcceeeeec-ccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCc
Q 002264 673 FEALRTPIESVALK-VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ 751 (945)
Q Consensus 673 ~~~~~~~i~~v~~s-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 751 (945)
..+....+++. |.|.+-.+ +..+.. + .........+ ...++.+. ...|+...+... ..
T Consensus 271 ---~ng~C~~~C~~~~~~~~~C~-C~~g~~-l-----------~~d~~~C~~~-~~~Ll~s~-~~~i~~i~l~~~---~~ 329 (628)
T 4a0p_A 271 ---SNGHCSHLCLAVPVGGFVCG-CPAHYS-L-----------NADNRTCSAP-TTFLLFSQ-KSAINRMVIDEQ---QS 329 (628)
T ss_dssp ---TGGGCSSEEEEETTTEEEEE-CSTTCE-E-----------CTTSSCEECC-SSEEEEEE-TTEEEEECCCTT---CC
T ss_pred ---CCCCcchhhhcCCCCCeeEE-cCCCcE-e-----------cccCCcCccc-cceeeeec-cceEEEEecccc---cC
Confidence 00001111111 10111100 000000 0 0000000001 11111111 122322222110 00
Q ss_pred ceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCc
Q 002264 752 CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (945)
Q Consensus 752 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 830 (945)
. ...++- .....+.+++|.+.+..|..+.. .+.|+.++..... .. ..+.....+...
T Consensus 330 ~-~~~l~~--~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-------~~------------~v~~~~~~~~~~ 387 (628)
T 4a0p_A 330 P-DIILPI--HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-------GF------------TVVVSSVPSQNL 387 (628)
T ss_dssp C-CEECCC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CE------------EEEC--------
T ss_pred c-eEEEEe--hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-------ce------------EEEEcccccccc
Confidence 0 011111 02345788999987776766554 5666665432110 00 000000000001
Q ss_pred CCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEe-cCCCCCeeEEEeecCCCceEEEeecCc--eEEEEecccc
Q 002264 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVD 905 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~~~~~~lasg~~dg--~v~vwd~~~~ 905 (945)
...+..+|+...++.|..+. .+.|.+.+++ |+...++ .........|++.|..|.+..+-.... .|...++...
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 34578899998877655443 5779999986 4444443 334456899999995555555443333 4666665533
Q ss_pred eEEEEecCCCcceeEEEecCCcceeeee-cCCceEEEEec
Q 002264 906 EVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQVTLCVE 944 (945)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~-~~Dg~i~vWdl 944 (945)
.........-.....|++.+++..|..+ +..+.|...|+
T Consensus 467 ~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~ 506 (628)
T 4a0p_A 467 EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL 506 (628)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 2222223234456889999876655544 44566766665
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=1.4e-06 Score=89.31 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=144.4
Q ss_pred ccEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
..+..++|++++..|..+. .++.|..++.+++.... .+.........+++.+++.. ++++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776665554 56789999987654221 22222346789999997664 4555666789999995554
Q ss_pred eEEEecC-CCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 486 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
....+.. .......+++++.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4333322 22457888887642 34444443 468888887654332222233346789999999888877654
Q ss_pred CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+.+.|..+|.........+.+.. ....+++. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 46789999987654443333221 23456654 45666655 56899999999999888886432 123578888887
Q ss_pred CC
Q 002264 641 GN 642 (945)
Q Consensus 641 g~ 642 (945)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=5.7e-10 Score=120.67 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=111.6
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
++..+++++.||.|+.||..+|+.+-. +.. +.+.+..+..++. .+++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578899999999999999999987653 332 4455555667776 677778999999999 78887766654321
Q ss_pred CEEEEEeeecC-CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 496 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
... ...|.- .+..+++++.|+.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23468888999999999999998887765543 2345668888888875 789999999999
Q ss_pred ceeeEeccccCcceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654321 1122333322 5678889999999999999998887764
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=3.5e-07 Score=106.85 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=86.6
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCe----------E-EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 46777888899999999999988877553221 0 11222 2456666653 889999999999988
Q ss_pred eEeccccCc---ceE-EEEEcCCCCEEEEEEC------CCcEEEEECCCCeeEEEeecCCCC------------------
Q 002264 578 RTYAGFRKK---SNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL------------------ 629 (945)
Q Consensus 578 ~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 629 (945)
-.+...... .+. ...+. +..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 776543110 111 11111 345666543 589999999999998887642110
Q ss_pred -----------CCccEEEEcCCCCEEEEEECCCc
Q 002264 630 -----------PNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 630 -----------~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
.....++++|++..++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124677887778877776653
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.87 E-value=5e-07 Score=96.06 Aligned_cols=199 Identities=9% Similarity=-0.013 Sum_probs=132.8
Q ss_pred EEe--cCCCeeEEEEEeCCCcEEEEe-CCC----ceEEEec------C-CCCCEEEEEeeecCCccEEEEEEcC------
Q 002264 458 AFA--YPNKLLCVVTCGDDKLIKVWE-LSG----RKLFNFE------G-HEAPVYSICPHHKENIQFIFSTAID------ 517 (945)
Q Consensus 458 ~~s--~~~~~~~l~s~s~d~~i~vwd-~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~~l~s~~~d------ 517 (945)
.++ ++++. +++++..++.|.++| .+. +....+. . ....-..+.+.| +| +++++..+
T Consensus 88 ~~~~~~~r~~-l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRF-LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCE-EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSC
T ss_pred ccCCCccCCE-EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCC
Confidence 446 77775 677888899999999 444 3444442 0 111233344434 66 66666555
Q ss_pred CeEEEEEccCCCeeEEecCCCC---eEEEEEEcCCCCEEEEEeec----------C-----CCCceEEEEeCCCCceeeE
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTS----------K-----DGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~----------~-----d~~~~i~iwd~~~~~~~~~ 579 (945)
|.|.++|..+.+.+..+..... .-..+.|+|+++.+++.... . .....|.+||+.+++.+.+
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 7899999999888887764322 23457889999988887410 0 1267899999999988888
Q ss_pred eccc-cCcceEEEEE--cCCCCEEEEEE------CCCcEEEEECCCCeeE--EEeecCCC----------------CCCc
Q 002264 580 YAGF-RKKSNGVVQF--DTTQNHFLAVG------EDSQIKFWDMDNVNIL--TSTDAEGG----------------LPNL 632 (945)
Q Consensus 580 ~~~~-~~~~~~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~--~~~~~~~~----------------~~~v 632 (945)
+... .......+.| +|+++++++++ .+++|.+|..+.+... +.+..... ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 7753 2223444555 99999988877 4668888777655321 11111110 1246
Q ss_pred cEEEEcCCCCEEEEEEC-CCcEEEEECCC
Q 002264 633 PRLRFSKEGNLLAVTTA-DNGFKILANAI 660 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~-dg~i~iw~~~~ 660 (945)
..+.+|+||++|.++.. .+.|.++|+..
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 88999999999998876 67999999863
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=117.81 Aligned_cols=257 Identities=10% Similarity=0.008 Sum_probs=136.0
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd 434 (945)
++. .+++|+.||.|+.||..+|+.+- ... . +.+.+..+..++..+++++.||.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W-------~~~------------~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKW-------TLK------------E--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEE-------EEE------------C--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEE-------Eec------------C--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 455 48889999999999999998763 211 1 2333444556787888888999999999
Q ss_pred ccCCcccccceeeccccc-cEE-EEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE
Q 002264 435 YAGSNDLRQHSQIDAHVG-AVN-DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI 511 (945)
Q Consensus 435 ~~~~~~~~~~~~~~~h~~-~v~-~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 511 (945)
.++|+.+.. +..+.. .+. +..+. ++. .+++++.|+.++.|| .+|+.+..+..+.. ..++| ++..+
T Consensus 66 ~~tG~~~w~---~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v 133 (369)
T 2hz6_A 66 SKNNEGLTK---LPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLL 133 (369)
T ss_dssp ----CCSEE---CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------E
T ss_pred CCCCceeee---eeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEE
Confidence 998876542 222211 110 11111 234 567788899999999 88998877765532 22334 45788
Q ss_pred EEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC---CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce
Q 002264 512 FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (945)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~ 588 (945)
++++.|+.|+.||.++++....+.... .....+..+. ..+++++. ++.++.||..+|+.+..+..... .+
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~----dg~v~a~d~~tG~~~W~~~~~~p-v~ 206 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNG----DGLVVTVDSESGDVLWIQNYASP-VV 206 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEET----SCEEEEECTTTCCEEEEEECSSC-EE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECC----CCEEEEEECCCCcEEEEecCCCc-eE
Confidence 899999999999999888766544221 1223333332 44555553 88999999999998777653322 33
Q ss_pred EEEEEcCCCCEEEE--EECCCcEEEEECCCCe----eEEEeecCCCCCCccEEEEcC--CCCEEEEEECCCcEEEEECC
Q 002264 589 GVVQFDTTQNHFLA--VGEDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSK--EGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 589 ~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp--~g~~l~~~~~dg~i~iw~~~ 659 (945)
....+++++...+. ...++.++.+|..+|+ .+..+.... .+. +| .+..+++++.+|.+..++..
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~---~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK---ETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC---HHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc---ccc----ccccccceEEEecccCCEEecCcc
Confidence 33445555532210 0113445666665555 333332211 111 22 34577788888888888765
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.80 E-value=1.2e-05 Score=82.45 Aligned_cols=256 Identities=13% Similarity=0.028 Sum_probs=152.4
Q ss_pred CEEEEEECCCcEEEEEccCCcccc--cceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEA 495 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~ 495 (945)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..++..+.....+ .....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 478889987653211 01112222345789999997764 555666678999999555433333 22234
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
....+++.+.. +.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++...
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC-
Confidence 67888887642 3455555667899999987544333333233457899999987777665431 11467888887543
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i 653 (945)
....+..........+++++++..|+.+. ..+.|.+++.........+.... ....++.. +..++.+. ..+.|
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEe--CCEEEEEECCCCeE
Confidence 22333211122467899999887777666 56789999997655444443211 23566654 45555555 46899
Q ss_pred EEEECCCCccccccccCCccccccCcceeeeecccc
Q 002264 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (945)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g 689 (945)
..++..++. ....+..... .....+++.|++
T Consensus 232 ~~~d~~~g~-~~~~i~~g~~----~~p~gi~~~~~~ 262 (267)
T 1npe_A 232 IAMDLAISK-EMDTFHPHKQ----TRLYGITIALSQ 262 (267)
T ss_dssp EEEETTTTE-EEEEECCSSC----CCCCCEEEECSC
T ss_pred EEEeCCCCC-ceEEEccccc----cccceeeecCcc
Confidence 999998873 3333321110 013456676665
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=6.6e-06 Score=93.68 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=72.1
Q ss_pred cEEEEEEc-CCeEEEEEc-cCCCeeEEecCCCCe-----------EEEEEEcCCCCE----EEEEeecCCCCceEEEEeC
Q 002264 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSR----LFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 509 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~----l~~~~~~~d~~~~i~iwd~ 571 (945)
..++.++. ++.|..+|. .+++.+..+...... ...++++|.+.. +++++. ++.|+-+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 35666776 788888998 888888776554321 123455443433 666653 889999999
Q ss_pred CCCceeeEeccccC---cceE-EEEEcCCCCEEEEEE------CCCcEEEEECCCCeeEEEeecC
Q 002264 572 SEGTIKRTYAGFRK---KSNG-VVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 572 ~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
.+|+.+-....... ..+. ...+. +..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 99998866543220 0111 11121 34566655 3899999999999998877643
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=3.5e-07 Score=100.96 Aligned_cols=229 Identities=8% Similarity=0.002 Sum_probs=148.3
Q ss_pred CCCeeEEEEEeCCCcEEEEe-CCCceEEEecC-CCCCEEEEEeeecCCccEEEEEE------------------cCCeEE
Q 002264 462 PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTA------------------IDGKIK 521 (945)
Q Consensus 462 ~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~------------------~dg~i~ 521 (945)
||++ ++++...++.|.+.| .+.++...+.- .......+++..-+++.++++++ .++.+.
T Consensus 100 DG~~-lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCE-EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 7885 455666677899999 77776664332 22347777763214667888875 345789
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC----------------------------------CceEE
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG----------------------------------DSFLV 567 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~----------------------------------~~~i~ 567 (945)
+.|.++.+...++...+ ....++++|+|+++++++.+.+. -+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999887777766544 34567899999999988853211 02367
Q ss_pred EEeCCC--Cce-eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe------------eEEEeecCCCCCC
Q 002264 568 EWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN------------ILTSTDAEGGLPN 631 (945)
Q Consensus 568 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~~ 631 (945)
+.|..+ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ....+.... .
T Consensus 258 VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---g 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---G 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---C
T ss_pred EEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---C
Confidence 777776 444 44444322 356689999999988877 78899999998653 333333221 4
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC---------ccccccccCCccccccCcceeeeecccccceeccCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG---------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
...++|+|+|...++..-|+.|.+|++.+. .+.+..+..+....+...-..+.++|||++|+++..
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 688999999943344556899999999762 123333333322222222234567788888876544
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=3.5e-06 Score=96.22 Aligned_cols=110 Identities=9% Similarity=0.061 Sum_probs=70.5
Q ss_pred cEEEEEEc-CCeEEEEEc-cCCCeeEEecCCCCe-----------EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 509 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.++.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35666666 788889998 888888776543310 011222 3455666653 7899999999999
Q ss_pred eeeEeccccCc---ceE-EEEEcCCCCEEEEEEC------CCcEEEEECCCCeeEEEeecC
Q 002264 576 IKRTYAGFRKK---SNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 576 ~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 626 (945)
.+-.+...... .+. ...+. +..+++++. +|.|+.+|..+|+.+..+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 88765532200 111 11111 346666664 799999999999998877643
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=5.8e-05 Score=86.12 Aligned_cols=377 Identities=11% Similarity=0.040 Sum_probs=198.1
Q ss_pred EEEEeCCCcEEEEe-CCCceEEEecCCCCCE---------EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV---------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 468 l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
++.++.++.|.-+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44445434488899 8899887765432210 11122 1246888899999999999999988876543
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEeecC--CCCceEEEEeCCCCceeeEeccccC---------------------
Q 002264 538 GH----WCT-TMLYSA---DGS-RLFSCGTSK--DGDSFLVEWNESEGTIKRTYAGFRK--------------------- 585 (945)
Q Consensus 538 ~~----~i~-~~~~s~---~~~-~l~~~~~~~--d~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 585 (945)
.. .+. ...+.. +|+ .+++++... ..++.|+-+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111111 233 454443110 1267899999999987765432100
Q ss_pred -------------------cceEEEEEcCCCCEEEEEEC--------------------C----CcEEEEECCCCeeEEE
Q 002264 586 -------------------KSNGVVQFDTTQNHFLAVGE--------------------D----SQIKFWDMDNVNILTS 622 (945)
Q Consensus 586 -------------------~~~~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 622 (945)
..-...+++|....++++.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00113567777788887763 2 5799999999999988
Q ss_pred eecCCCC----CCccE-EEEc---CCCC---EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 623 TDAEGGL----PNLPR-LRFS---KEGN---LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 623 ~~~~~~~----~~v~~-v~~s---p~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++.+.. ....... .....+... .|+-
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~-~~~~~~~---~~~~~~~~~-~g~p 381 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA-FPFVDNI---TWASHIDLK-TGRP 381 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE-EESSSCC---CSEEEECTT-TCCE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc-cccccCc---ccccccccc-CCCE
Confidence 7653221 01111 2222 4674 788899999999999999843322 2111000 000111000 0110
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEE
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 771 (945)
+.. ..+.+. .+.. .. .........|...+... -..++
T Consensus 382 ~~~-------------------------~~~~~~-----------~~~~--~~----~~~~~~~~~P~~~Gg~~-w~~~a 418 (582)
T 1flg_A 382 VER-------------------------EGQRPP-----------LPEP--GQ----KHGKAVEVSPPFLGGKN-WNPMA 418 (582)
T ss_dssp EEC-------------------------TTCSCC-----------CCCT--TC----SSCCCEEESSCTTCSSC-SSCCE
T ss_pred eEc-------------------------cccCCc-----------cccc--cc----cCCCceEECcCCccccC-CCCce
Confidence 000 000000 0000 00 00001112222111211 13578
Q ss_pred EecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCC
Q 002264 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (945)
Q Consensus 772 ~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd 851 (945)
++|+...+++...+-...++..+. ....|... .-..+...|++ ...+
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~------------------~~~~g~~~-----------~g~~~~~~p~~----~~~~ 465 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEV------------------SYTKGSAY-----------LGMGFRIKRMY----DDHV 465 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCC------------------CCCTTSCC-----------CCEEEEEEESC----SSCS
T ss_pred ECCCCCEEEEechhcceeeecccc------------------cccCCCce-----------eccceeecCCC----CCCc
Confidence 888877777766554333332110 00011100 00111122331 1125
Q ss_pred CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcce-eEEEecCCccee
Q 002264 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI-TGLAFSTSLNIL 930 (945)
Q Consensus 852 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 930 (945)
|.|..||+.+++.+.+..... ++..-.... .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.|..||+..
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 789999999999887765322 222222222 34578889999999999999999998887644322 226667788744
Q ss_pred e
Q 002264 931 V 931 (945)
Q Consensus 931 ~ 931 (945)
+
T Consensus 544 v 544 (582)
T 1flg_A 544 L 544 (582)
T ss_dssp E
T ss_pred E
Confidence 4
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.63 E-value=5.2e-06 Score=83.03 Aligned_cols=205 Identities=8% Similarity=-0.030 Sum_probs=135.8
Q ss_pred ceEEeecCCCc--EEEEEEeCCCCeEEEEEeC--cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 336 TVAVSLHQGST--VISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 336 ~~~~~~~h~~~--V~~v~fsp~g~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
.....+.|... ...++|+|+|. |.++.+. ++.|.+.|+.+++.+.... +..+ .....
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~fgeG 70 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YFGEG 70 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CCEEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cceEE
Confidence 45666677754 68999999974 5555443 5799999999998774311 1111 12234
Q ss_pred EEEcCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 412 VAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 412 i~~s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+++. ++.|..+ -.++.+.++|..+.+.+.. +...... ...+++||+. ++.+..++.|.++| .+.+.+..
T Consensus 71 i~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 71 LTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp EEEE--TTEEEEEETTCSEEEEEETTTTEEEEE---EECCSSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEe--CCEEEEEEecCCEEEEEECCCCcEEEE---EECCCCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEEE
Confidence 5554 4455444 4578999999999877663 3211111 2446678884 44445688999999 77777776
Q ss_pred ecCCC-----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------------CCeEEEEEEcCCCC
Q 002264 490 FEGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGS 551 (945)
Q Consensus 490 ~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~ 551 (945)
+.-.. ..++.+.|. ++...+....++.|.+.|..+++....+... ....+.++|+|+++
T Consensus 142 I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp EECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 65322 135677765 4555555556889999999999887776542 13568999999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+++++. ..+.+...++...
T Consensus 219 ~lfVTgk---~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 219 RIFVTGK---LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEET---TCSEEEEEEEEEC
T ss_pred EEEEECC---CCCeEEEEEEecc
Confidence 8887764 3667777776543
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=1.1e-05 Score=94.21 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=168.6
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccE-EEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
+++++.++.|.-+|..+|+.+ |.......... ..... ..+ ..+++ .+..++.++.|+.|..+|.++
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVK---ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGG---GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCeEEEEECCCChhc-------eEECCCCCccc---cccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence 666777899999999999876 32221100000 00000 000 11222 356788888899999999999
Q ss_pred Ccccccceeecc-ccccEEE-EEEecCCCeeEEEEEe-----CCCcEEEEe-CCCceEEEecCCC---C-----------
Q 002264 438 SNDLRQHSQIDA-HVGAVND-LAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHE---A----------- 495 (945)
Q Consensus 438 ~~~~~~~~~~~~-h~~~v~~-l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~~~~~~~~~~---~----------- 495 (945)
|+.+-....... ....+.+ ... .++. +++..+ .++.|..+| .+|+.+.++.... .
T Consensus 137 G~~~W~~~~~~~~~~~~~~~~P~v-~~~~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 137 GKAIWSQQTTDPAKPYSITGAPRV-VKGK--VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp CCEEEEEECSCTTSSCBCCSCCEE-ETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CCEeeeeccCCCCCcceecCCCEE-ECCE--EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 987643221100 0011111 111 1343 333222 258999999 8999987775311 0
Q ss_pred -----------------CEEEEEeeecCCccEEEEEEcCC-------------------eEEEEEccCCCeeEEecCCC-
Q 002264 496 -----------------PVYSICPHHKENIQFIFSTAIDG-------------------KIKAWLYDTMGSRVDYDAPG- 538 (945)
Q Consensus 496 -----------------~v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~- 538 (945)
....+++.+ +...++.++.++ .|..+|.++++.+..+....
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~ 291 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG 291 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred cccCCccceeeeCCCCccccceEEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC
Confidence 011234443 345777777766 39999999999988776531
Q ss_pred --------CeEEEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----------cc---------
Q 002264 539 --------HWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------KS--------- 587 (945)
Q Consensus 539 --------~~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----------~~--------- 587 (945)
.+.....+..+|+ .++.++ .++.++++|..+|+.+........ ..
T Consensus 292 ~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 292 DSWDFTATQQITLAELNIDGKPRKVLMQAP----KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred ccccccCCCCcEEEEeccCCcEEEEEEEEC----CCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 2222223334665 455554 489999999999998743321110 00
Q ss_pred ---------------eEEEEEcCCCCEEEEEE------------------------------------CCCcEEEEECCC
Q 002264 588 ---------------NGVVQFDTTQNHFLAVG------------------------------------EDSQIKFWDMDN 616 (945)
Q Consensus 588 ---------------~~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~~ 616 (945)
-..++++|+...+++.. .+|.|+.||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 01257788777766521 237899999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
++.+....... +.....+...+.++++++.|+.++.||..+++..
T Consensus 448 G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 448 QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 99988776543 2344445557889999999999999999999443
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.53 E-value=3.7e-05 Score=76.88 Aligned_cols=195 Identities=10% Similarity=-0.008 Sum_probs=135.5
Q ss_pred cEEEEEEecCCCeeEEEEEeC--CCcEEEEe-CCCceEEEecCCC-CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
....++|++++. ++++.+. ++.|.+.| .+++.+..+.-.. .....+++. + +.+.++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~--Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDT--LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTE--EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCe--EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C-CEEEEEEecCCEEEEEECCCC
Confidence 367899999864 5555543 67999999 8899887765222 223345543 2 355556667899999999988
Q ss_pred CeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEE
Q 002264 529 GSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 529 ~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 603 (945)
+....+... ... ..+++||+.++++. +++.|.++|..+.+.+..+..... ...+.+.+. ++ .+++.
T Consensus 97 ~v~~~i~~g~~~g---~glt~Dg~~l~vs~----gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn 167 (266)
T 2iwa_A 97 SNIKNFTHQMKDG---WGLATDGKILYGSD----GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWAN 167 (266)
T ss_dssp EEEEEEECCSSSC---CEEEECSSSEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred cEEEEEECCCCCe---EEEEECCCEEEEEC----CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEe
Confidence 887777544 222 33556888887653 378999999999988887764321 125567777 56 45554
Q ss_pred E-CCCcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCC
Q 002264 604 G-EDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (945)
Q Consensus 604 ~-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~ 661 (945)
. .++.|.+.|..+++.+..+...+ .....+.++|+|+++.+++++ ..+.+...++...
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 67899999999999999887531 112458999999987665554 5778888887543
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=1.5e-05 Score=94.78 Aligned_cols=247 Identities=9% Similarity=0.031 Sum_probs=131.7
Q ss_pred cEEEEEEe-CCCCeEEEEEeCcC----cEEEEEcCCC-CcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 346 ~V~~v~fs-p~g~~llasgs~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
.+...+|| |||++++++.+.+| +|+++|+.++ +.+.. .+. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 68899999 99997555544443 5999999988 63311 011 1234689999999
Q ss_pred EEEEEECC-----CcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCC--ce-EE
Q 002264 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSG--RK-LF 488 (945)
Q Consensus 420 ~las~~~d-----g~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~--~~-~~ 488 (945)
.|+....+ ..|.++++.++..... ..+. ........+.|+|||+.+.+.+.+ ....|.++| .++ .. +.
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887765 2588888877642211 1222 223456788999999953333322 234577888 443 22 13
Q ss_pred Eec-CCCCCEEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEE-ecCCCC--eEEEEEEcCCCCEEEEEeecC
Q 002264 489 NFE-GHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 489 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+. .......++.|+. ++.+++....+ ..|..+++.+...... +..+.. .+..+.+ +++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 443 3344555555432 22344444433 2566666654222112 222222 4455555 4556655543 2
Q ss_pred CCCceEEEEeC-------CCCceeeEeccccCcceEEEEE----cCCCC-EEEEEECC---CcEEEEECCCCee
Q 002264 561 DGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF----DTTQN-HFLAVGED---SQIKFWDMDNVNI 619 (945)
Q Consensus 561 d~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~~~~~d---g~i~iwd~~~~~~ 619 (945)
++...|.++|+ .+++....+.......+..+.+ ++++. .+++.+.. +.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34456778886 3443133332211111222222 34554 44443322 4678888877764
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.51 E-value=4.9e-06 Score=97.45 Aligned_cols=277 Identities=9% Similarity=0.029 Sum_probs=152.5
Q ss_pred EEEEeC-CCCeEEEEEeCcC-----------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 349 ~v~fsp-~g~~llasgs~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
++++.| +|+ +++.|+.+. .+.+||..+++..... .....+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 567777 776 788876542 5788998876643210 01112333344578889
Q ss_pred CCCEEEEEEC-CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CC-----CcEEEEe-CCCceEE
Q 002264 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKLF 488 (945)
Q Consensus 417 ~g~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d-----~~i~vwd-~~~~~~~ 488 (945)
+|++++.|+. +..+.+||..+++-... ..+..... -.+++..++|+ +++.|+ .+ ..+.+|| .+++- .
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~-~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W-~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARG-YQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW-T 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCS-SCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE-E
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCCCcccc-ccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc-e
Confidence 9999999984 45799999887643221 12221111 23455667888 777787 44 5789999 55443 2
Q ss_pred EecCCC-CCE----EEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCC---------CCeEEEEE
Q 002264 489 NFEGHE-APV----YSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAP---------GHWCTTML 545 (945)
Q Consensus 489 ~~~~~~-~~v----~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~---------~~~i~~~~ 545 (945)
.+.... .+. ....+ ..++..++.|+.+ ..+..||..+.......... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221100 000 00011 1133445555444 35677887765533221111 11123444
Q ss_pred EcC-CCCEEEEEeecCCC----Cc---eEEEEeCCCCceeeEe--ccccCcceEEEEEcCCCCEEEEEECC---------
Q 002264 546 YSA-DGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED--------- 606 (945)
Q Consensus 546 ~s~-~~~~l~~~~~~~d~----~~---~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 606 (945)
+.. +++.+++++.+... .. .+.+||..+....... ...........+..++++.+++||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 433 66666776642100 11 6788898877655443 22222123445667899999998854
Q ss_pred --CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
..+.+||..+.+....-..........+..+.|+|++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988764432211111111234556789999999985
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.50 E-value=1e-05 Score=79.61 Aligned_cols=183 Identities=15% Similarity=0.073 Sum_probs=127.6
Q ss_pred cEEEEEEecCCCeeEEEEEeCCC--cEEEEe-CCCceEEEecCCCCC-EEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNFEGHEAP-VYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd-~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
....+.|+ ++. ++.+.+.+| .|+++| .+++.+..+.-.... --.+++ .+ +++.+..-.++.+.+||..+.
T Consensus 44 ftqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 44 FTEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTC
T ss_pred ccceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccC
Confidence 35789998 554 666776665 899999 899988877643322 123443 32 245555557899999999999
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEEE
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 604 (945)
+...++...... ..+++|++.|+.+. +.+.|.++|..+.+.+..+..... ..++.+.+. +|. +++..
T Consensus 118 ~~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~ 188 (262)
T 3nol_A 118 RQVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANV 188 (262)
T ss_dssp CEEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cEEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEE
Confidence 988887765432 23446777777653 377899999999998887765321 124456665 564 55554
Q ss_pred -CCCcEEEEECCCCeeEEEeecCCC----------CCCccEEEEcCCCCEEEEEECC
Q 002264 605 -EDSQIKFWDMDNVNILTSTDAEGG----------LPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 605 -~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.++.|.+.|..+++.+..+...+- ..-.+.++|+|+++.|++.+..
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 688999999999999998876421 1245889999998888877753
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=5.5e-05 Score=79.12 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=137.1
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-CC-cEEEEe-CC
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK-LIKVWE-LS 483 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~-~i~vwd-~~ 483 (945)
.....++|+++|+++++-..++.|..||.+++ ... .+ .....+..+++.++|+ ++++... ++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45778999999997777667889999987753 221 11 1234688999999998 5554433 33 466777 66
Q ss_pred CceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-e-------c--CCCCeEEEEEEcCCCCE
Q 002264 484 GRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-Y-------D--APGHWCTTMLYSADGSR 552 (945)
Q Consensus 484 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~~~~~ 552 (945)
++...... ........++..+ ++..+++...++.|..+|...+..... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65432221 1122234444322 334444444688888888765321111 0 0 111234455 788888
Q ss_pred EEEEeecCCCCceEEEEeCCC-Cce--eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
|+++.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 477899999864 332 1122111 134558899999877666678899999975 6553322222222
Q ss_pred CCccEEEEc---CCCCEEEEEECC
Q 002264 630 PNLPRLRFS---KEGNLLAVTTAD 650 (945)
Q Consensus 630 ~~v~~v~~s---p~g~~l~~~~~d 650 (945)
....+++|. |+++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888888777654
No 260
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.48 E-value=0.0024 Score=78.50 Aligned_cols=226 Identities=13% Similarity=0.087 Sum_probs=124.1
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCC------CeeEEEEEeC-CCcEEE
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN------KLLCVVTCGD-DKLIKV 479 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~------~~~~l~s~s~-d~~i~v 479 (945)
..|.+.+.+ +.+++.++ .+.+.+++++.++ +...... .-...|.|+++.|.+ . +++.|.. |+++++
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~-L~~~~~~-~l~~evscl~i~~~~~~~~~s~--~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQE-LRQISHT-EMEHEVACLDITPLGDSNGLSP--LCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTE-EEEEEEE-ECSSCEEEEECCCCSSSTTCCS--EEEEEETTTTEEEE
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCc-eeeeccc-CCCCceEEEEeecCCCCccccc--EEEEEECCCCEEEE
Confidence 456666655 34666665 6788888887653 2222121 235579999998642 4 7888886 999999
Q ss_pred Ee-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC--CCeeE--EecCCCCeEEEEEEcCCCC-E
Q 002264 480 WE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT--MGSRV--DYDAPGHWCTTMLYSADGS-R 552 (945)
Q Consensus 480 wd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~--~~~~~~~~i~~~~~s~~~~-~ 552 (945)
++ ..-+.+.... +......++++...+...+|..|-.||.+.-+.++. +.... .......++.-..+...|. .
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEE
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCcee
Confidence 99 5444443222 112345566554433456889999999987666553 22221 1122223444333433343 3
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC--CCEEEEEECCCcEEEEECCCCe--eEEEeecCCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG 628 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 628 (945)
+++++ +....++... ++....-... ........|+.. .+-++..+ ++.++|..+.+.. .+..+....
T Consensus 667 V~a~s-----~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~- 737 (1158)
T 3ei3_A 667 VFACS-----DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYE- 737 (1158)
T ss_dssp EEEES-----SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSS-
T ss_pred EEEEC-----CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCC-
Confidence 44443 3344444433 3322211111 112234456432 23455444 4569998876433 344444432
Q ss_pred CCCccEEEEcCCCCEEEEEECC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+..++++|+.+.++++..+
T Consensus 738 --Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 738 --SPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp --EEEEEEEEGGGTEEEEEEEE
T ss_pred --CceEEEEcCCCCEEEEEEEe
Confidence 67899999988887776644
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=3.2e-05 Score=81.72 Aligned_cols=241 Identities=12% Similarity=0.066 Sum_probs=143.6
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee-----------------ccccccEEEEEEec-CCCeeEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-----------------DAHVGAVNDLAFAY-PNKLLCVV 469 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~h~~~v~~l~~s~-~~~~~~l~ 469 (945)
...+++|+++|+++.++..++.|..|+..++.. ..+... ......+..+++.+ ++. |+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---LY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---EE
Confidence 456788999999788888899999998876532 211000 01123578999998 554 34
Q ss_pred EEeCCCcEEEEeCCCceEEEecCC-----CCCEEEEEeeecCCccEEEEEEc-----------------CCeEEEEEccC
Q 002264 470 TCGDDKLIKVWELSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDT 527 (945)
Q Consensus 470 s~s~d~~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~ 527 (945)
.+...+.+..+|..+..+..+... ......+++.+. +|.+.++... ++.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 444445588888443333333211 124677777541 4455555322 36788888765
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
+....... .......++++++++.|+++.. ..+.|..|++.... ....+... .. ...++++++|+..++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEEE
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEecC
Confidence 54332211 1123457899999997776643 26789999987531 11222211 12 567899999987666544
Q ss_pred ----------CCcEEEEECCCCeeEEEeecCCC--CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 606 ----------DSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 606 ----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.|..+|. .++.+..+..... ...+..+++ .++++.++....+.|..+++...
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888887 4777776665432 235667776 35555555556778999887543
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.43 E-value=4.1e-05 Score=87.19 Aligned_cols=307 Identities=11% Similarity=0.048 Sum_probs=173.3
Q ss_pred EEEEeC-cCcEEEEEc-CCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE----EEEEECCCcEEEE
Q 002264 360 LLVGSS-NGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY----VGVAFTKHLIQLY 433 (945)
Q Consensus 360 lasgs~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~----las~~~dg~i~vw 433 (945)
|++++. ++.|.-+|. .+|+.+ |................+ .....++++|.+.. |+.++.|+.+.-+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~l-------W~~~~~~~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al 136 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTIL-------WQDKPKQNPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEE-------EEECCCCCGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEE-------EEECCCCCcccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence 556666 788999998 888865 322211100000000000 00112455444444 7888889999999
Q ss_pred EccCCcccccceeecccc--ccEEE-EEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEEecCCCCC-------
Q 002264 434 SYAGSNDLRQHSQIDAHV--GAVND-LAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (945)
Q Consensus 434 d~~~~~~~~~~~~~~~h~--~~v~~-l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~~~~~~~~------- 496 (945)
|.++|+.+-... +..+. ..+.+ ... .++. ++.++ .++.|+.+| .+|+.+.++......
T Consensus 137 Da~TG~~~W~~~-~~~~~~~~~~~ssP~v-~~g~---V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 137 NAETGETVWKVE-NSDIKVGSTLTIAPYV-VKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp ETTTCCEEEEEE-CCCGGGTCBCCSCCEE-ETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred ECCCCCEEEeec-CCCCCccceeecCCEE-ECCE---EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 999998654321 11111 01111 111 2443 34443 489999999 899988776532211
Q ss_pred ------------------------------E-EEEEeeecCCccEEEEEEcC----------------CeEEEEEccCCC
Q 002264 497 ------------------------------V-YSICPHHKENIQFIFSTAID----------------GKIKAWLYDTMG 529 (945)
Q Consensus 497 ------------------------------v-~~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~ 529 (945)
+ ...++.+ ...+++.++.+ +.|..+|.++++
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~--~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeC--CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 0 0122222 33566666654 379999999999
Q ss_pred eeEEecCCCC---------eEEEEEEc-CCCC---EEEEEeecCCCCceEEEEeCCCCceeeEecccc------------
Q 002264 530 SRVDYDAPGH---------WCTTMLYS-ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------ 584 (945)
Q Consensus 530 ~~~~~~~~~~---------~i~~~~~s-~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------------ 584 (945)
.+..+....+ ...-+... .+|+ .++.++ .++.++++|..+|+.+.......
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 365 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD----RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKT 365 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC----TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT
T ss_pred eeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEEC----CCcEEEEEECCCCCEeecccccCCcccccccccCC
Confidence 8887665432 11112222 4673 444444 48899999999999876554211
Q ss_pred Ccc--------------------------eEEEEEcCCCCEEEEEE----------------------------------
Q 002264 585 KKS--------------------------NGVVQFDTTQNHFLAVG---------------------------------- 604 (945)
Q Consensus 585 ~~~--------------------------~~~~~~~~~~~~l~~~~---------------------------------- 604 (945)
... -..++++|+...+++..
T Consensus 366 g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~ 445 (599)
T 1w6s_A 366 GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGD 445 (599)
T ss_dssp CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSB
T ss_pred CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCC
Confidence 000 12356777666665531
Q ss_pred -----CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCc
Q 002264 605 -----EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (945)
Q Consensus 605 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (945)
..|.|..||+.+++.+....... +...-.....+..++.++.|+.++.||.++++.+- .++... ...
T Consensus 446 ~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW-~~~l~~-g~~--- 517 (599)
T 1w6s_A 446 RQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW-KFKIPS-GAI--- 517 (599)
T ss_dssp TTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE-EEECSS-CCC---
T ss_pred cccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEE-EeeCCC-CcE---
Confidence 34789999999999887775432 22221223356788889999999999999995433 332211 111
Q ss_pred ceeeeeccccccee
Q 002264 680 IESVALKVSASSAV 693 (945)
Q Consensus 680 i~~v~~s~~g~~l~ 693 (945)
...+.+..+|+..+
T Consensus 518 ~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 518 GYPMTYTHKGTQYV 531 (599)
T ss_dssp SCCEEEEETTEEEE
T ss_pred eccEEEEeCCEEEE
Confidence 12345567777543
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.43 E-value=4.4e-05 Score=80.56 Aligned_cols=254 Identities=9% Similarity=0.014 Sum_probs=140.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcc--ccc----ccccCCCccEEEEEEcC-CC
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP--FQA----SIFKDVPISVSRVAWSP-DG 418 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~h~~~V~~i~~s~-~g 418 (945)
...+++|+++|+ ++.++..++.|..|+..+++... |........ ... .........+..+++.+ +|
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 567788999998 47778888999999877654321 100000000 000 00000113578999998 55
Q ss_pred CEEEEEECCCcEEEEEccCCcccccce-eecc-ccccEEEEEEec-CCCeeEEEEEeC-----------------CCcEE
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHS-QIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIK 478 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~-~~~~-h~~~v~~l~~s~-~~~~~~l~s~s~-----------------d~~i~ 478 (945)
+ |..+...+.|..+|..++.. +.+. ...+ .......+++.+ +|. +.++... ++.|.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEE
Confidence 5 44454555588888776532 2111 1111 123478899999 887 5555432 36788
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEE-EcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.|| .+++. ..+...-.....+++++ +++.|+.+ +..+.|..|++.... ....+..... ...+++.++|+..+
T Consensus 169 ~~d~~~~~~-~~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 169 KYDPSTKET-TLLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEETTTTEE-EEEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred EEeCCCCEE-EEeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence 888 44543 22222223345678765 55655544 566899999987521 1111111222 67899999998666
Q ss_pred EEeecC------CCCceEEEEeCCCCceeeEeccccC---cceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 555 SCGTSK------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 555 ~~~~~~------d~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
+..... ...+.|..+|. .++.+..+..... ..+..+++. ++..+++....+.|..+++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 553200 00356888887 4777666654321 235555553 444444444677788888653
No 264
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.43 E-value=0.0065 Score=74.64 Aligned_cols=291 Identities=9% Similarity=0.066 Sum_probs=159.6
Q ss_pred CCCcEEEEEEeCCC-----CeEEEEEeC-cCcEEEEEcCCCCcccccccccccccccCcccccccccC--CCccEEEEEE
Q 002264 343 QGSTVISMDFHPSH-----QTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD--VPISVSRVAW 414 (945)
Q Consensus 343 h~~~V~~v~fsp~g-----~~llasgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~i~~ 414 (945)
-..+|.|+++.|.+ ..++|+|.. |++|+|+++.+.+.+... .+.+ -...|.-+.+
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~-----------------~L~~~~~p~si~l~~~ 614 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE-----------------MLGGEIIPRSILMTTF 614 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE-----------------ECCSSCCEEEEEEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE-----------------ECCCCCCCcEEEEEEe
Confidence 45689999998743 136888986 999999999865544211 1111 1122333333
Q ss_pred cCCCCEEEEEECCCcEEEEEcc--CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 492 (945)
....+|..|-.||.+.-+.++ +|+.......+-| ..++.=..+...|.. .++.+| +....++...++....-.
T Consensus 615 -~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~-~V~a~s-~rp~liy~~~~~l~~s~l- 689 (1158)
T 3ei3_A 615 -ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTT-NVFACS-DRPTVIYSSNHKLVFSNV- 689 (1158)
T ss_dssp -TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCE-EEEEES-SSCEEEEESSSSEEEEEB-
T ss_pred -CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCce-eEEEEC-CCCEEEEEcCCceEEecc-
Confidence 234688899999988666654 4433221111222 345555555555553 334444 444444553444332211
Q ss_pred CCCCEEEEE-eeecCCccEEEEEEcCCeEEEEEccCCCeeE--EecCCCCeEEEEEEcCCCCEEEEEeecC-----C---
Q 002264 493 HEAPVYSIC-PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSK-----D--- 561 (945)
Q Consensus 493 ~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~-----d--- 561 (945)
.-..+.+++ |+...-..-++.. .++.++|..++..+... .+.. +..+..++++|+.+.++.+.... +
T Consensus 690 ~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 690 NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 122333333 3221111234433 35568888776543322 2222 34678888888877665544211 0
Q ss_pred -------------------------------------CCceEEEEeCCCCceeeEeccccCcceEEEE---EcCC-CCEE
Q 002264 562 -------------------------------------GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ---FDTT-QNHF 600 (945)
Q Consensus 562 -------------------------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~l 600 (945)
....|++.|..+.+.+..+.-.....+.+++ |..+ ..++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 0135788888888877777655554555554 3322 4688
Q ss_pred EEEE----------CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 601 LAVG----------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 601 ~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+ ..|.|++|++..++....... .-.++|++++-- +|+ |++|- ...|++|++...
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTT
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCC
Confidence 8876 357899999875543332222 123367776643 454 44443 468999999754
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00015 Score=75.83 Aligned_cols=237 Identities=8% Similarity=0.007 Sum_probs=138.5
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.+....+.-......++|+|+|+ ++++...++.|..||.... ... . + .....+..+++
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~--------------~-~~~~~p~gia~ 79 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----H--------------A-TVEGKVSGLAF 79 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----E--------------E-ECSSEEEEEEE
T ss_pred ceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----E--------------E-eCCCCceeEEE
Confidence 44455555446789999999998 6777667889999987643 211 1 1 11246889999
Q ss_pred cCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEEEe
Q 002264 415 SPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNF 490 (945)
Q Consensus 415 s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~~~ 490 (945)
+++|+++++..... .|..++..+++... +..+. .......++..+++. .+++...++.|.++| ..++ .+...
T Consensus 80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~~ 155 (306)
T 2p4o_A 80 TSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 155 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEEE
Confidence 99999766654432 46666766665321 11221 122334555555544 555555688898999 4332 12111
Q ss_pred c---------CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCe--eEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 491 E---------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 491 ~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
. ..-.....+ ++++ +.++++-...+.|..|+++. +.. ...+.. ......++++++|+..++..
T Consensus 156 ~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~- 230 (306)
T 2p4o_A 156 HPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH- 230 (306)
T ss_dssp CGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-
T ss_pred CCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-
Confidence 1 111234455 4532 23455556678999999875 211 111110 12345688999998655544
Q ss_pred cCCCCceEEEEeCCCCceee--EeccccCcceEEEEEc---CCCCEEEEEECCC
Q 002264 559 SKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFD---TTQNHFLAVGEDS 607 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg 607 (945)
+.+.|.++|.. ++... .+... .....+++|. ++++.|++++..+
T Consensus 231 ---~~~~V~~~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 ---IYNSVVRIAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ---TTCCEEEECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ---CCCeEEEECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence 36789999975 55532 22222 1257889998 7888888776543
No 266
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.42 E-value=2e-05 Score=77.61 Aligned_cols=189 Identities=10% Similarity=0.028 Sum_probs=124.6
Q ss_pred ceEEeecCCCcE--EEEEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 336 TVAVSLHQGSTV--ISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 336 ~~~~~~~h~~~V--~~v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
.++..+.|...- ..+.|+ ++. |..+.+.+| .|+++|+.+++.+.... +. .....
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~-----------------l~---~~~Fg 89 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE-----------------LG---KRYFG 89 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE-----------------CC---TTCCE
T ss_pred EEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe-----------------cC---Cccce
Confidence 345566666554 899999 664 677777665 99999999998875311 11 12222
Q ss_pred EEEcCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 412 VAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 412 i~~s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
....++++.|... ..++.+.+||.++.+.+..+. +.+ ....+++|++ .|+.+..++.|.++| .+.+.+.+
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~-~~~-----eG~glt~dg~--~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN-YDG-----EGWGLTHNDQ--YLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE-CSS-----CCCCEEECSS--CEEECCSSSEEEEECTTTCSEEEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE-CCC-----CceEEecCCC--EEEEECCCCeEEEEcCCCCeEEEE
Confidence 2222335555444 458899999999988776432 222 2234446777 444444578899999 78888777
Q ss_pred ecCCC-----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------------CCeEEEEEEcCCCCE
Q 002264 490 FEGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------GHWCTTMLYSADGSR 552 (945)
Q Consensus 490 ~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~ 552 (945)
+.... ..++.+.|. +|.+.+..-.+..|.+.|..+++....+... ....+.++|+|+++.
T Consensus 162 I~V~~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred EEeccCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 65421 334556664 5565555557889999999998887766543 235689999999999
Q ss_pred EEEEe
Q 002264 553 LFSCG 557 (945)
Q Consensus 553 l~~~~ 557 (945)
|++.+
T Consensus 239 lfVTG 243 (262)
T 3nol_A 239 LFVTG 243 (262)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88887
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=0.0011 Score=75.59 Aligned_cols=206 Identities=10% Similarity=-0.009 Sum_probs=120.9
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeecccccc------EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA------VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~------v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
+..+++++.++.|.-+|..+|+.+-....-...... -..++. .+. .++.++.|+.|..+| .+|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 344555555444888898888765322110000000 011222 234 567778899999999 899988766
Q ss_pred cCCCC----CEE-EEEeeec-CCcc-EEEEEE------cCCeEEEEEccCCCeeEEecCCCCeE----------------
Q 002264 491 EGHEA----PVY-SICPHHK-ENIQ-FIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWC---------------- 541 (945)
Q Consensus 491 ~~~~~----~v~-~~~~~~~-~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i---------------- 541 (945)
..... .+. .-.+... .+++ .+++++ .++.|..+|..+++.+.........+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 53221 111 1111111 1222 566654 37899999999988877654321100
Q ss_pred -------------------------EEEEEcCCCCEEEEEeecC----------CC----------CceEEEEeCCCCce
Q 002264 542 -------------------------TTMLYSADGSRLFSCGTSK----------DG----------DSFLVEWNESEGTI 576 (945)
Q Consensus 542 -------------------------~~~~~s~~~~~l~~~~~~~----------d~----------~~~i~iwd~~~~~~ 576 (945)
..+++.|+...++.+..+. .+ .+.|.-+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 1345667777777665310 11 16899999999999
Q ss_pred eeEeccccC--------cceEEEEEc-CCCC---EEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 577 KRTYAGFRK--------KSNGVVQFD-TTQN---HFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 577 ~~~~~~~~~--------~~~~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
+-.++.... .....+... .+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccccc
Confidence 887754211 011112222 4564 67788899999999999999998876643
No 268
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.40 E-value=0.0014 Score=69.03 Aligned_cols=279 Identities=9% Similarity=0.038 Sum_probs=149.9
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...+.+|.|.+++. ++++| .+|.| +...+.|+.-..... ........+.+|.|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-
Confidence 45799999988877 46655 46654 333444432211000 0112345788999986 44444
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~v~~~~~ 502 (945)
++.++.|.. ..+.|+..........+.+.+..+.+.+++. .++.+ .++.|..-...|+.- .........+..+.+
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEE
Confidence 455664433 4455554442221112345678888887776 55555 456543322234322 222345567888887
Q ss_pred eecCCccEEEEEEcCCeE-EEEEccCCCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 503 HHKENIQFIFSTAIDGKI-KAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
.+ ++.+++.+ .+|.+ +-+|-. +..-.. .......+..+.+.++++.++++. ++.+++.+...++.-..+
T Consensus 171 ~~--~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 171 SP--SGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp CT--TSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred cC--CCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 65 45666555 44544 333320 111111 122345688899999987765543 566776642223322222
Q ss_pred ccc---cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-CCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 581 ~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
... ....+..+.+.+++..++ ++.+|.| .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~-~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWL-AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEE-EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEE-EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 211 112467788888766554 4557777 4556666655555422 1123678899976554 6666778877665
Q ss_pred EC
Q 002264 657 AN 658 (945)
Q Consensus 657 ~~ 658 (945)
+-
T Consensus 319 ~~ 320 (327)
T 2xbg_A 319 VT 320 (327)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=3.2e-05 Score=76.14 Aligned_cols=182 Identities=7% Similarity=0.043 Sum_probs=125.6
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
.....+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. .....-..++++. +.+..-.++.+.+|| .+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 345678887 4667777788899999999999887754 322 2323223335554 445566789999999 8899
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--C---eEEEEEEcCCCCEEEEEeecC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--H---WCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+.++..... -..++ + +++.|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+ |.+...
T Consensus 128 ~~~ti~~~~e-GwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGE-GWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSC-CCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCc-eeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 8888875322 24444 3 34567666679999999999888777665422 1 44667776 665 444443
Q ss_pred CCCceEEEEeCCCCceeeEeccc------------cCcceEEEEEcCCCCEEEEEEC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
....|.+.|..+++.+..+... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 3678999999999988877642 1225788999998877777764
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=3.6e-05 Score=75.77 Aligned_cols=180 Identities=10% Similarity=0.023 Sum_probs=125.9
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE--EEEEeeecCCccEEEEEEcCCeEEEEEccCCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 529 (945)
....+.|+. +. ++++.+.+|.|+++| .+++.+..+ -.... -.+++ .++ ++.+..-.++.+.+||..+.+
T Consensus 56 ftqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCc
Confidence 457888873 43 778888889999999 888887776 22233 33443 333 556666678999999999998
Q ss_pred eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc----ceEEEEEcCCCCEEEEEE-
Q 002264 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVG- 604 (945)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~- 604 (945)
.+.++...... .. +++|++.|+.+. +++.|.++|..+.+.+..+...... .++.+.|. +|. +++..
T Consensus 128 ~~~ti~~~~eG-wG--Lt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw 198 (268)
T 3nok_A 128 RERTTRYSGEG-WG--LCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW 198 (268)
T ss_dssp EEEEEECSSCC-CC--EEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEeCCCce-eE--EecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC
Confidence 88877765432 23 336788877764 4889999999999988877643221 23556666 564 55554
Q ss_pred CCCcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEEC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
.++.|.+.|..+++.+..+...+ ...-.+.++++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 68899999999999998886531 1124688999997766666553
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.36 E-value=0.00048 Score=73.19 Aligned_cols=247 Identities=13% Similarity=0.018 Sum_probs=148.9
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
+..+|.+..+++ +|+++ ....|+..++...... .+.. .-..+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~-------------------~~~~-~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYT-------------------LLLN-NLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEE-------------------EEEC-SCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeE-------------------Eeec-CCCceEEEEEeccccEEEEE
Confidence 345677777744 44443 2456777777554321 1122 23457899999866666555
Q ss_pred -ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCCCEEEEEe
Q 002264 425 -FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICP 502 (945)
Q Consensus 425 -~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~ 502 (945)
...+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.+.+|.....+ ...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 456789999988654222 12222344678999986664 455666678899999666543333 333456788998
Q ss_pred eecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 503 HHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 503 ~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.|. ++.++++-... +.|..++++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 775 34555555555 78888887654433332333446789999998888877653 46789999986543332232
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 243 ~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 245566663 33344444466778777766666555554
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00047 Score=73.25 Aligned_cols=217 Identities=10% Similarity=-0.041 Sum_probs=135.3
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
...........+..++|++.++.|..+-...+.|..++...+.... +....-.....+++.
T Consensus 64 ~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd 124 (349)
T 3v64_C 64 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVD 124 (349)
T ss_dssp CEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEE
T ss_pred eeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------EEeCCCCCccEEEEe
Confidence 3344444555789999998777667776667889999987654221 111122345688999
Q ss_pred CCCCEE-EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-CcEEEEeCCCceEEEecC-
Q 002264 416 PDGNYV-GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELSGRKLFNFEG- 492 (945)
Q Consensus 416 ~~g~~l-as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~- 492 (945)
+.+..| ++-...+.|.+.++++..... .+...-.....+++.|.+.. ++++-... +.|...+.+|.....+..
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~---l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEE---EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCCceEE---EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 865555 444556789999987643221 12233456789999997764 44444444 788888877765555432
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.-.....+++++. ++.+.++-...+.|..+|++.................+++. +..++.+.. +.+.|..++..
T Consensus 201 ~~~~PnGla~d~~-~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~---~~~~V~~~~~~ 274 (349)
T 3v64_C 201 HLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW---HTKSINSANKF 274 (349)
T ss_dssp SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET---TTTEEEEEETT
T ss_pred CCCCcceEEEeCC-CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecC---CCCeEEEEEcc
Confidence 3345788999765 33555555667889999987654444343334456677772 334544432 36778888866
Q ss_pred CCceeeEec
Q 002264 573 EGTIKRTYA 581 (945)
Q Consensus 573 ~~~~~~~~~ 581 (945)
+++....+.
T Consensus 275 ~G~~~~~i~ 283 (349)
T 3v64_C 275 TGKNQEIIR 283 (349)
T ss_dssp TCCSCEEEE
T ss_pred CCCccEEec
Confidence 666555554
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.00036 Score=75.33 Aligned_cols=247 Identities=13% Similarity=0.022 Sum_probs=149.9
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~- 424 (945)
.-+|.+..+.+ +|+++ ....|+..++..+.... +.. ....+..++|++.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~-------------------~~~-~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LLN-NLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE-------------------EEC-SCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE-------------------Eec-CCCccEEEEEecCCCeEEEEe
Confidence 34566666643 34443 34678888876543221 122 23458899999866655554
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCCCEEEEEee
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPH 503 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~ 503 (945)
...+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.+..|.....+ ...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999988654221 12222334577899986664 455666677888888655543333 3333567888987
Q ss_pred ecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 504 HKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 504 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
|. ++.++++-... +.|..++++.................++++|++..|+.+-. +.+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 65 33445554444 78888887755444443334446789999998888877653 467899999865433333322
Q ss_pred ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.. .....+++. .+..+++-...+.|..++..+++....+..
T Consensus 287 ~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC-CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 245567773 344444444677888888767766666543
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.33 E-value=7.6e-05 Score=85.13 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=156.6
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC------CCcEEE
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT------KHLIQL 432 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~------dg~i~v 432 (945)
.++.++.|+.|..+|..+|+.+ |.......... ..-...++. . ++ .+++++. ++.|..
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~-------W~~~~~~~~~~---~~~~~~P~v----~-~g-~v~vg~~~~~~~~~g~v~a 180 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKIN-------WEVEVCDPKVG---STLTQAPFV----A-KD-TVLMGCSGAELGVRGAVNA 180 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEE-------EEEECCCGGGT---CBCCSCCEE----E-TT-EEEEECBCGGGTCCCEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEE-------EEecCCCCCcc---ceeccCCEE----E-CC-EEEEEecCCccCCCCEEEE
Confidence 3677788999999999999876 32211100000 000111111 1 34 4555544 789999
Q ss_pred EEccCCcccccceeeccc----------------------------------cc-cEEEEEEecCCCeeEEEEEeC----
Q 002264 433 YSYAGSNDLRQHSQIDAH----------------------------------VG-AVNDLAFAYPNKLLCVVTCGD---- 473 (945)
Q Consensus 433 wd~~~~~~~~~~~~~~~h----------------------------------~~-~v~~l~~s~~~~~~~l~s~s~---- 473 (945)
+|.++|+.+-........ .. ....+++.++.. .++.++.
T Consensus 181 ~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g--~vy~~~g~~~~ 258 (571)
T 2ad6_A 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN--LFYYGSGNPAP 258 (571)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT--EEEEECCCCSC
T ss_pred EECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC--eEEEECCCCcc
Confidence 999998865422111000 00 012356777666 3444432
Q ss_pred --------C----CcEEEEe-CCCceEEEecC--CCC----CEEEEE-eeecCCc---cEEEEEEcCCeEEEEEccCCCe
Q 002264 474 --------D----KLIKVWE-LSGRKLFNFEG--HEA----PVYSIC-PHHKENI---QFIFSTAIDGKIKAWLYDTMGS 530 (945)
Q Consensus 474 --------d----~~i~vwd-~~~~~~~~~~~--~~~----~v~~~~-~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~ 530 (945)
| +.|..+| .+|+.+..+.. |.. .+.... +....+| ..++.++.+|.+.++|..+++.
T Consensus 259 ~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 259 WNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp SCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 2 3599999 88998877653 211 111111 1111245 3577888999999999999888
Q ss_pred eEEecCCC-------------CeE--------------------------EEEEEcCCCCEEEEEeec------------
Q 002264 531 RVDYDAPG-------------HWC--------------------------TTMLYSADGSRLFSCGTS------------ 559 (945)
Q Consensus 531 ~~~~~~~~-------------~~i--------------------------~~~~~s~~~~~l~~~~~~------------ 559 (945)
+....... .++ ..++++|+...+++...+
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 418 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY 418 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence 76654322 111 235788888877765421
Q ss_pred ------------------C---CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 560 ------------------K---DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 560 ------------------~---d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
. +..+.|..||+.+++.+-.+..... +....+...+..+++++.||.|+.||..+++
T Consensus 419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 0 1357899999999998877654322 2222223346788889999999999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
.+..+...... .-..+.+..+|+.++
T Consensus 497 ~lw~~~~~~~~-~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 497 ELWNFKMPSGG-IGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred EEEEEeCCCCc-EeeeEEEEECCEEEE
Confidence 99988765421 123344556666444
No 275
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.33 E-value=0.014 Score=69.46 Aligned_cols=486 Identities=12% Similarity=0.072 Sum_probs=241.6
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...|.++.-..+|. |-.|+.+| +..||..+.+.... .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34799998888885 55566555 77899876532110 0011235777754 355 4555
Q ss_pred EECCCcEEEEEccCCcccccceee-c-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC------CC
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQI-D-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH------EA 495 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~-~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~------~~ 495 (945)
|+.+ -+..++..+++... .... . -....|.++....+|. +.+ |+.+ -+..++........+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 47888887654221 1000 0 1234688888887777 333 4444 477888333333333211 12
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|.++.... ++..|..|+. +-+..+|..+.............|.++....+|...+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 377776533 3444555554 457778876544322212223468888888888766543 2348888887665
Q ss_pred eeeEecc------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-----CCCCCCccEEEEcCCCCEE
Q 002264 576 IKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-----EGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 576 ~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~l 644 (945)
....... .....|.++....+|. |..|+..| +.++.... ....+.. ......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 1122477787777765 55566666 55543322 1111111 1112357888888887755
Q ss_pred EEEECCCcEEEEECCCCcc-ccccccC--CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCC
Q 002264 645 AVTTADNGFKILANAIGLR-SLRAVEN--PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~-~~~~~~~--~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (945)
+ |+.+ .+..++..++.. ....+.. .........|.++.-..+|.+.+
T Consensus 339 i-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi---------------------------- 388 (758)
T 3ott_A 339 F-GGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI---------------------------- 388 (758)
T ss_dssp E-EETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE----------------------------
T ss_pred E-eeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE----------------------------
Confidence 5 4555 465666544311 1111110 00111122355555555555443
Q ss_pred ccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC--CCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCC
Q 002264 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST--DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (945)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~ 799 (945)
|+ ++.+..++... ..+......... .....|.++....+|...+ ++..+-+..++.......
T Consensus 389 ----------gt-~~GL~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~ 452 (758)
T 3ott_A 389 ----------AT-DGSINRYDYAT----RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQS 452 (758)
T ss_dssp ----------EE-TTEEEEEETTT----TEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHC
T ss_pred ----------Ee-CCcHhhcCcCC----CcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEcccccccc
Confidence 22 13344444321 111111110000 0234577787777776444 444445666653210000
Q ss_pred CCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE-ecCCCeEEEEeccCceEEEEecC-C--CCCe
Q 002264 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMS-P--PPAS 875 (945)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la-~~sd~~i~iwd~~~~~~~~~~~~-h--~~~i 875 (945)
..+..... ..+.... .+ ....|.++...++|++.+ .++.+.|..+|..+++....... . ...+
T Consensus 453 ~~~~~~~~---~~~~~~~------~l----~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~ 519 (758)
T 3ott_A 453 TSGQYIAE---QNYSVHN------GL----SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSP 519 (758)
T ss_dssp CSSEEECS---EEECGGG------TC----SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCE
T ss_pred CCcceecc---ccccccc------cc----ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCccc
Confidence 00000000 0000000 01 234688999999998776 35556688899887665432211 1 2357
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecccceEEEEe--cC-CCcceeEEEecCCcceeeeecCCc
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL--KG-HQKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l--~~-h~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
.++.... +|.+.+ |+..| +..|+..+++.. .+ .+ ....|.++... +|.+.+++ ..|
T Consensus 520 ~~i~~d~-~g~lWi-gt~~G-l~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~lWi~t-~~G 578 (758)
T 3ott_A 520 NYLLCDE-DGLLWV-GFHGG-VMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSIWVST-TNG 578 (758)
T ss_dssp EEEEECT-TSCEEE-EETTE-EEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEEEEEE-SSC
T ss_pred ceEEECC-CCCEEE-EecCc-eEEEecCCCceE-EecccCCCccceEEEEEC-CCCEEEEC-CCC
Confidence 8888777 665554 45554 888887655321 11 11 12446666653 55555543 444
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.0003 Score=69.82 Aligned_cols=199 Identities=9% Similarity=0.041 Sum_probs=129.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+++..++|+|+++.|.++...++.|...|.. ++.+... .+.+ ......|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-----------------~l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-----------------PLDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-----------------ECSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-----------------ecCC-CCChHHeEEeCCCEEEEE
Confidence 35899999999988777778888999999987 6655321 1222 256788999999987777
Q ss_pred EECCCcEEEEEccCCcccccceee------ccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEe--CCCceEEEec--
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQI------DAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE--LSGRKLFNFE-- 491 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~------~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd--~~~~~~~~~~-- 491 (945)
.-.++.+.++++.....+...... ...+.....++|+|.++. |+++.... .|..|+ ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 656778999988765432111111 123456799999999985 33344333 455555 2222222221
Q ss_pred -----CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------CeEEEEEEcCCCCEEEEEe
Q 002264 492 -----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 492 -----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~ 557 (945)
.+...+.+++++|. .+++++.....+.+..+|... +....+.... .....|+|.++|+..++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 12345788999986 457888888888999998664 4444444432 25689999999985555 4
Q ss_pred ecCCCCceEEEEe
Q 002264 558 TSKDGDSFLVEWN 570 (945)
Q Consensus 558 ~~~d~~~~i~iwd 570 (945)
. .+.++.+.
T Consensus 242 E----~n~~y~f~ 250 (255)
T 3qqz_A 242 E----PNRFYRFT 250 (255)
T ss_dssp T----TTEEEEEE
T ss_pred C----CceEEEEE
Confidence 2 44565554
No 277
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00017 Score=70.44 Aligned_cols=183 Identities=16% Similarity=0.113 Sum_probs=126.0
Q ss_pred ccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-CCCceEEEecCCCCC-EEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.....+.|+. +. ++.+.+.+ ..|+.+| .+|+.+..+.-.... --.+++ .+ +++....-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~-~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WR-DRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eC-CEEEEEEeeCCEEEEEECCc
Confidence 4567899986 44 56666665 4899999 899988777543221 123343 32 35566666789999999999
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 603 (945)
.+.+.++...... ..+ .++++.|+.+- +++.|.++|..+.+.+..+..... ..++.+.+. +|. +++.
T Consensus 95 l~~~~ti~~~~~G-wgl--t~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyan 165 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WAL--TSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLAN 165 (243)
T ss_dssp TEEEEEEECSSCC-CEE--EECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred CcEEEEEeCCCCc-eEE--eeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEE
Confidence 9888887765432 233 35677776653 478899999999988887765321 124455555 454 5554
Q ss_pred E-CCCcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEEC
Q 002264 604 G-EDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 604 ~-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
. .+..|.+.|..+++.+..+...+ ...-.+.++++|+++.|++.+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4 68899999999999999887442 1124588999998877777664
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.31 E-value=0.00015 Score=70.87 Aligned_cols=184 Identities=8% Similarity=0.026 Sum_probs=123.7
Q ss_pred CccEEEEEEcCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
......+.|++ +.+..+.+.+| .|+.+|+++|+.++... +.. .........+++. +.+..-.++.+.+|| .
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCT---TCCEEEEEEETTE-EEEEESSSSEEEEEETT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEECC
Confidence 45577899986 56666666654 89999999998776432 222 2222222333554 444556789999999 8
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-----CeEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-----HWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~ 557 (945)
+.+.+.++...... ..++ + ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+ +.+..
T Consensus 94 tl~~~~ti~~~~~G-wglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-WALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANV 166 (243)
T ss_dssp TTEEEEEEECSSCC-CEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEeCCCCc-eEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEE
Confidence 88988888754332 4454 3 34556666668899999999888777665432 245566665 565 44443
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccc------------cCcceEEEEEcCCCCEEEEEEC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
. ....|.+.|..+++.+..+... .....+.++++|+++.|++.+.
T Consensus 167 w---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 W---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp T---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 3 3668999999999998877622 2235788999999888888875
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.29 E-value=0.0015 Score=68.41 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=141.7
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC----ce-EEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RK-LFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~----~~-~~~~~~~~ 494 (945)
+|+.+. ...|+..++++++... .+ .....+.+++|.+.+.. ++++-...+.|..++..+ .. ...+...-
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEEC-CCeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 344443 3468999988765433 22 23456789999987764 555666678999999444 22 22232222
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34577887654 33555666678899999987554443333344567899999977777665431 136888888753
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
.....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222222567899999888877766 5678999999754433333322222234677775 34555555556788
Q ss_pred EEEECCCC
Q 002264 654 KILANAIG 661 (945)
Q Consensus 654 ~iw~~~~~ 661 (945)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.00045 Score=74.61 Aligned_cols=228 Identities=10% Similarity=-0.052 Sum_probs=138.6
Q ss_pred ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 326 ~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
.++.++...............+..++|++.+..|+.+-...+.|..++...+.... ++...
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~ 157 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTG 157 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSS
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCC
Confidence 34444433333444445556789999998777667776667889999987654221 11112
Q ss_pred CccEEEEEEcCCCCEE-EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-CcEEEEeCC
Q 002264 406 PISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELS 483 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-~~i~vwd~~ 483 (945)
......+++.+.+..| ++-...+.|.+.++++..... .+...-.....+++.|.+.. ++++-... +.|...+..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETT
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCC
Confidence 2345678998865555 444556788888887543211 22233456789999997774 34444444 778888866
Q ss_pred CceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 484 GRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 484 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
|.....+. ..-.....+++++.. +.+.++-+..+.|..+|++.......+.........+++. +..++.+.. +
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~---~ 307 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW---H 307 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET---T
T ss_pred CCCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeC---C
Confidence 65544443 233457889998753 3555566667889999987554444443334456677772 334444432 3
Q ss_pred CceEEEEeCCCCceeeEecc
Q 002264 563 DSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~ 582 (945)
.+.|..++..+++....+..
T Consensus 308 ~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTEEEEEETTTCCSCEEEEC
T ss_pred CCeEEEEECCCCcceEEEcc
Confidence 67788888667766655543
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.26 E-value=3.8e-05 Score=89.86 Aligned_cols=243 Identities=9% Similarity=-0.039 Sum_probs=135.9
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeC-CCc
Q 002264 411 RVAWSP-DGNYVGVAFTKH-----------LIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGD-DKL 476 (945)
Q Consensus 411 ~i~~s~-~g~~las~~~dg-----------~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~-d~~ 476 (945)
++++.+ +|+.++.|+.+. .+.+||..+++-... ..+. .+.....++++..+++ +++.|+. +..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 566777 899999987643 588999988754322 1222 2333344678888898 7888874 568
Q ss_pred EEEEe-CCCceEEEecC-CCCCE-EEEEeeecCCccEEEEEE-cC-----CeEEEEEccCCCeeEEe-----cCCCCeEE
Q 002264 477 IKVWE-LSGRKLFNFEG-HEAPV-YSICPHHKENIQFIFSTA-ID-----GKIKAWLYDTMGSRVDY-----DAPGHWCT 542 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~-~~~~v-~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~i~ 542 (945)
+.+|| .+++-. .+.. +.... .++++.+ ++++++.|+ .+ ..+.+||..+..-...- ...... .
T Consensus 267 v~~yd~~t~~W~-~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~ 342 (656)
T 1k3i_A 267 TSLYDSSSDSWI-PGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K 342 (656)
T ss_dssp EEEEEGGGTEEE-ECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T
T ss_pred eEEecCcCCcee-ECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c
Confidence 99999 555432 2211 11111 2223322 567888888 34 46889998765432210 000000 0
Q ss_pred EEEEcCCCCEEEEEeecC-----CCCceEEEEeCCCCceeeEeccccC--------cceEEEEEcC-CCCEEEEEECCC-
Q 002264 543 TMLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRK--------KSNGVVQFDT-TQNHFLAVGEDS- 607 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~-----d~~~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~l~~~~~dg- 607 (945)
...+..++..++.++.++ .....+..||..+............ ..-.++.+.. +++.+++||.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 011223445445544311 0134678899887664433221111 0123344433 567777777432
Q ss_pred ----------cEEEEECCCCeeEEEe--ecCCCCCCccEEEEcCCCCEEEEEECC-----------CcEEEEECCCC
Q 002264 608 ----------QIKFWDMDNVNILTST--DAEGGLPNLPRLRFSKEGNLLAVTTAD-----------NGFKILANAIG 661 (945)
Q Consensus 608 ----------~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~l~~~~~d-----------g~i~iw~~~~~ 661 (945)
.|.+||..+....... ..+.. ..-.+++..|+|++++.|+.+ ..+.+||..+.
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 5788888777655443 22211 122455677899999999854 46889998765
No 282
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.25 E-value=0.021 Score=68.02 Aligned_cols=489 Identities=11% Similarity=0.072 Sum_probs=248.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...|.|+.-..+|. |-.|+.+| +..||-..-+.... . -......|.++....+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~~----------------~--~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHFT----------------Y--GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECSC----------------T--TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEEc----------------c--CCCCCceEEEEEEcCCCc-EEE
Confidence 34799999999996 44566666 55566322111000 0 011245689988877764 555
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-----CCCCCEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-----GHEAPVY 498 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-----~~~~~v~ 498 (945)
|+.+| +..||..+..... ........|.++.. .+|. +..++.+ -+..+|........+. .....|.
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEE
Confidence 66665 7899987753221 11112335777654 3554 3444544 6788883333333431 1134577
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
++... .++. |..++.+ -+..++..+.... .+... ...|.++...+++..|..++ ++-+..+|..
T Consensus 150 ~i~~d--~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~ 219 (758)
T 3ott_A 150 SIIRT--KDNQ-IYVGTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPS 219 (758)
T ss_dssp EEEEC--TTCC-EEEEETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETT
T ss_pred EEEEc--CCCC-EEEEeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCC
Confidence 77643 3444 4445554 4667776554322 12111 22488888877777655555 2348889987
Q ss_pred CCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC-----CCCCccEEEEcCCCCEEEEE
Q 002264 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~l~~~ 647 (945)
+++.... .......+.++....+|... .|+.+ -+.+++..++.......... ....|.++....+|.+. .|
T Consensus 220 ~~~~~~~-~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iG 295 (758)
T 3ott_A 220 TGQIKQT-EAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LG 295 (758)
T ss_dssp TTEEEEE-EEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EE
T ss_pred CCeEEec-cCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EE
Confidence 7654322 21122257777777776554 45544 58888887665433221111 12357888888777654 45
Q ss_pred ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCC
Q 002264 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (945)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (945)
+..| +.++.......... ............|.++....+|.+.+... .+
T Consensus 296 T~~G-l~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~G---------------------------- 344 (758)
T 3ott_A 296 TDYG-ISLSRYNSALQFIP-ISQITGTGDGNQFYSLFRDSKGFYWFGGA-NG---------------------------- 344 (758)
T ss_dssp ESSS-EEEECCCC-CEEEE-HHHHSCSCCCCBEEEEEECTTCCEEEEET-TE----------------------------
T ss_pred eCCc-ccccccCCceeEEe-cccCCCCCCCceEEEEEEcCCCCEEEeeC-Cc----------------------------
Confidence 5555 54443221111100 00000001123466666666666654321 11
Q ss_pred CccccCCCCCCcccccceeecCCcceeeecC--CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCcee
Q 002264 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (945)
Q Consensus 728 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (945)
+..++..... .......... ........|.++.-..+|...+. + ++-+..|+.... ...
T Consensus 345 ----------l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~------~~~ 405 (758)
T 3ott_A 345 ----------LIRFTDPAGE-RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-T-DGSINRYDYATR------QFI 405 (758)
T ss_dssp ----------EEEESCTTSS-CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-E-TTEEEEEETTTT------EEE
T ss_pred ----------ceeecccccc-cceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-e-CCcHhhcCcCCC------cEE
Confidence 1111110000 0000000000 00002346788888888875543 3 445666763221 110
Q ss_pred eeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCc-----eEE---EEec---C-CCC
Q 002264 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----KVM---TTFM---S-PPP 873 (945)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~-----~~~---~~~~---~-h~~ 873 (945)
. +....... .+ ....|.++...++|++.+....+.|.++|..+. ... ..+. + ...
T Consensus 406 ~------~~~~~~~~---~~----~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 406 H------YNIVDNTG---TY----NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp E------EEEECCC-----C----BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred E------eecCCCcC---CC----CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 0 00000000 00 234688888888887766544667888886531 111 1111 1 223
Q ss_pred CeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC---CCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---HQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
.|.++...+ ++++.+.++..+-+..+|..+++....... ....+.++....+|.+.+.+ ..| +..+|
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~ 542 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRIN 542 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEEC
T ss_pred eeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEe
Confidence 588999888 777665333344588899887764432211 12467888888888877754 455 55555
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.0038 Score=65.23 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=137.6
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEEccCC---ccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGS---NDL 441 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg~i~vwd~~~~---~~~ 441 (945)
...|+..|+.+.+... ++. .-..+..++|++.+..|..+ ..++.|..+++++. ...
T Consensus 9 ~~~I~~i~~~~~~~~~-------------------~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTS-------------------LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEE-------------------EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEe-------------------hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 4678889987754321 111 23467899999976665555 44688999998761 222
Q ss_pred ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcC-Ce
Q 002264 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID-GK 519 (945)
Q Consensus 442 ~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 519 (945)
.. .+...-.....+++.+.+.. ++++-...+.|.+.+..+.....+. ........+++.|. ++.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCe
Confidence 21 12222235678999876654 4556667889999996665544432 23356788888764 33444444333 68
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe-ccc-cCcceEEEEEcCCC
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-AGF-RKKSNGVVQFDTTQ 597 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 597 (945)
|...+++...........-.....+++++++..|+.+-. +.+.|..+|+.... .+.+ ... .......+++. .+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TT
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CC
Confidence 888887654433333333456789999998888877653 46789999987433 2333 211 11134556664 24
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEee
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
..+++-...+.|..++..+++.+..+.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444444467788888877776555543
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.16 E-value=0.0011 Score=71.91 Aligned_cols=231 Identities=9% Similarity=-0.042 Sum_probs=136.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+..++...............+..++|++.+..|..+-...+.|..+++........ ...++...-
T Consensus 94 I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~~~ 158 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDI 158 (400)
T ss_dssp EEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECSSC
T ss_pred eEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeCCC
Confidence 44444333444445556678999999997776666666678898888765321000 001122234
Q ss_pred ccEEEEEEcCCCCEE-EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCC
Q 002264 407 ISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSG 484 (945)
Q Consensus 407 ~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~ 484 (945)
.....+++.+.+..| ++-...+.|.+.++++..... .+...-.....|++.|.+.. ++++- +..+.|...+.+|
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---EEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---EEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCC
Confidence 567889999855444 444557789999987653222 22223445789999997764 33333 3347888888777
Q ss_pred ceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 485 RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 485 ~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
.....+. ..-.....|++.+.. +.+.++-...+.|..+|++.......... .-.....+++ ++..++.+-.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~--- 308 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI--- 308 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEES---
T ss_pred CccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecC---
Confidence 6544443 333567889997653 34455555678899999876544433332 1223456666 3444544432
Q ss_pred CCceEEEEeCCCCceeeEecc
Q 002264 562 GDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~ 582 (945)
+.+.|..+|..+++.+..+..
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEEC
T ss_pred CCCeEEEEEcCCCCceEEEec
Confidence 366788888777766665543
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.14 E-value=0.0039 Score=67.49 Aligned_cols=232 Identities=9% Similarity=-0.006 Sum_probs=146.5
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC-----ceEEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~-----~~~~~~~~~~ 494 (945)
+|+.+. ...|+..++++..... +......+..++|.+.+.. ++++-...+.|..++..+ .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 4678888888654332 2234567889999987764 455555678888888544 2233333344
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.....+++.+. .+.+.++-...+.|.+.+++.......+.........+++.|.+..|+.+-. ...+.|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 56778888764 3456666667889999988766555444444456789999998777776542 11367888887644
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
......... -.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 333332222 12567899999888887776 5678999998765544444332222234566663 33445555566789
Q ss_pred EEEECCCCc
Q 002264 654 KILANAIGL 662 (945)
Q Consensus 654 ~iw~~~~~~ 662 (945)
..++..++.
T Consensus 314 ~~~~~~~G~ 322 (400)
T 3p5b_L 314 FSANRLTGS 322 (400)
T ss_dssp EEEESSSCC
T ss_pred EEEEcCCCC
Confidence 989877763
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.11 E-value=0.0026 Score=66.26 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=143.3
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg~i~vwd~~ 436 (945)
+||++. ...|+..++........ .....-..+..++|++.+..|..+ ...+.|..++++
T Consensus 6 ~ll~~~--~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~ 65 (318)
T 3sov_A 6 LLLYAN--RRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN 65 (318)
T ss_dssp EEEEEC--EEEEEEEETTCTTSCCE------------------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETT
T ss_pred EEEEEc--cCeEEEEECCCCceEEE------------------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEcc
Confidence 344443 57899999876531110 011122357789999965555544 456789999988
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEEEE
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
++..... .+...-.....+++.+.+.. ++++-...+.|.+++..|.....+. ........+++.|.. ..|+.+.
T Consensus 66 g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td 140 (318)
T 3sov_A 66 KTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTD 140 (318)
T ss_dssp SSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEE
T ss_pred CCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEe
Confidence 7632211 12222345678999976654 5556666788999996665444432 344567889988753 3444444
Q ss_pred --cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE
Q 002264 516 --IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (945)
Q Consensus 516 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 593 (945)
..+.|...+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+.. .....+++
T Consensus 141 ~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~-~~P~glav 216 (318)
T 3sov_A 141 WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL-PHPFALTL 216 (318)
T ss_dssp CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC-SCEEEEEE
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC-CCceEEEE
Confidence 3578888887654433333333346789999998888877653 47789999986433322222222 24555666
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.. +..+++-...+.|..++..+++....+..
T Consensus 217 ~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 217 FE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 53 33444444677888888877776655543
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.08 E-value=0.00032 Score=83.26 Aligned_cols=246 Identities=8% Similarity=-0.053 Sum_probs=130.3
Q ss_pred cCCCc-cEEEEEEc-CCCCEEEEEEC-CC----cEEEEEccCC-cccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 403 KDVPI-SVSRVAWS-PDGNYVGVAFT-KH----LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 403 ~~h~~-~V~~i~~s-~~g~~las~~~-dg----~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.+|.. .+...+|| |||++||.+.. +| .|+++|+.+| +.+.. .+. .....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEEC
Confidence 34553 78899999 99999986543 33 4999999998 63321 121 12457899999985 4433333
Q ss_pred -----CcEEEEe-CCCc--eEEEecC-CCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccCCC-ee--EEec-CCC
Q 002264 475 -----KLIKVWE-LSGR--KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMG-SR--VDYD-APG 538 (945)
Q Consensus 475 -----~~i~vwd-~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~-~~~ 538 (945)
..|.+++ .++. ....+.. ......++.|++ ||++|+..+. ...|.++|+.++. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 2577777 3332 1223322 223455667765 6677776553 3457788887653 22 2222 223
Q ss_pred CeEEEEEEcCCCCEEEEEeecC-CCCceEEEEeCCCC-ceee-EeccccCcceEEEEEcCCCCEEE-EEECCCc--EEEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG-TIKR-TYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQ--IKFW 612 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~--i~iw 612 (945)
....++.|+ +|+.|+..+... .+...|..+|+.++ .... .+.......+..+.+. ++.|+ +...+|. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 344444443 366666655322 24567888888753 3222 2332222133444444 45554 4556665 5556
Q ss_pred EC-------CCCeeEEEeecCCCCCCccEEEE----cCCCC-EEEEEECC---CcEEEEECCCC
Q 002264 613 DM-------DNVNILTSTDAEGGLPNLPRLRF----SKEGN-LLAVTTAD---NGFKILANAIG 661 (945)
Q Consensus 613 d~-------~~~~~~~~~~~~~~~~~v~~v~~----sp~g~-~l~~~~~d---g~i~iw~~~~~ 661 (945)
++ .++.....+..... ..+..+.+ ++++. ++++.+.. ..+..+|+.++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP-IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS-SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred ecccccccccCCccceEECCCCc-eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 65 34431344433221 11223322 34554 44443332 45777777665
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.07 E-value=0.0028 Score=62.88 Aligned_cols=206 Identities=12% Similarity=0.104 Sum_probs=132.0
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
.+.+-...+..++|+|++.. ++++...++.|...|.+++.+..+.- -....-.+++. +++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~-L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNT-LFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTE-EEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCE-EEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEEEEE
Confidence 34455567999999998775 45556668899999966888877642 22457777775 3666767766778899998
Q ss_pred ccCCCee---EEec------CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCceeeEec------cccCcce
Q 002264 525 YDTMGSR---VDYD------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYA------GFRKKSN 588 (945)
Q Consensus 525 ~~~~~~~---~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~------~~~~~~~ 588 (945)
+...... .... ........++|+|+++.|+++... ....|+.|+-. ....+..+. .......
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 8765531 1221 123356899999999888877641 12256666511 111112111 1111246
Q ss_pred EEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCC-------CCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 589 GVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
..++++|....+++.+ ..+.|.++|.. ++.+..+..... ...-..|+|.++|+ |+..++.+.++.+..
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 7899999876666655 66778889975 557766665532 23457899999998 445577777776654
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.00062 Score=74.57 Aligned_cols=240 Identities=8% Similarity=0.123 Sum_probs=136.8
Q ss_pred cEEEEEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-CC----cEEEEe
Q 002264 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK----LIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~----~i~vwd 481 (945)
....++++| ++..|.++...+.|+.+|++++... .+.........++|+++|+. |+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 457899998 4666666665578999998875432 22234456889999999984 444432 22 233344
Q ss_pred CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEee
Q 002264 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..+... ..+.. ......+++++. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+..
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 444322 22221 223456677653 456666666788999999876554222222 2235678999999997766643
Q ss_pred cCCCCceEEEEeCCC--Cce--eeEeccc------cC--------cceE-EEEEc--------CCCCEEEEEECCCcEEE
Q 002264 559 SKDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~--~~~--~~~~~~~------~~--------~~~~-~~~~~--------~~~~~l~~~~~dg~i~i 611 (945)
..+.|..++... +.. ...+.+. .. .... .+++. +++..+++=...+.|+.
T Consensus 290 ---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 290 ---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp ---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred ---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 367888877542 222 1222211 00 0122 45553 33444444446678888
Q ss_pred EECCCCeeEEEeec---------CC------CCCCccEEEEcCC-CCEEEEEECCCcEEEEECC
Q 002264 612 WDMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILANA 659 (945)
Q Consensus 612 wd~~~~~~~~~~~~---------~~------~~~~v~~v~~sp~-g~~l~~~~~dg~i~iw~~~ 659 (945)
++ .+|........ .+ .......++++|+ +.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 45654433321 00 0123578999995 5555554456778877653
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.94 E-value=0.0028 Score=74.42 Aligned_cols=221 Identities=9% Similarity=-0.021 Sum_probs=131.7
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
....+......+.+++|++.+.+|+++-...+.|+.+++........ ...++...-.....|++.
T Consensus 415 ~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 415 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEE
T ss_pred cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeee
Confidence 33444455678899999997666667766678888888765321000 001122233456789999
Q ss_pred CCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEecC-
Q 002264 416 PDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEG- 492 (945)
Q Consensus 416 ~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~- 492 (945)
+.++.|..+ ...+.|.+.++++... +. .+...-.....|++.|.+.. ++++- +..+.|.+.+..|.....+..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~--l~~~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~ 555 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTE 555 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeE-EE--EEeCCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEEEeC
Confidence 877655544 4567899999876432 21 12233446889999998764 33333 333678888877776655543
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.-.....|++.+.. +.++++-...+.|...+++............ .....|++ ++..|+.+-. +.+.|...|
T Consensus 556 ~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~~~~I~~~d 629 (791)
T 3m0c_C 556 NIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSAN 629 (791)
T ss_dssp SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---TTTEEEEEE
T ss_pred CCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---CCCEEEEEe
Confidence 33568889987653 3455555566789999987655444443321 23345555 3445555432 366777777
Q ss_pred CCCCceeeEec
Q 002264 571 ESEGTIKRTYA 581 (945)
Q Consensus 571 ~~~~~~~~~~~ 581 (945)
..+++.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 77766555543
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.93 E-value=0.0037 Score=65.16 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=128.7
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE-EE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GV 423 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as 423 (945)
..+.+++|.+.++.|..+-...+.|..++...+.... .++...-.....+++.+.+..| ++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------------------~~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------------------NVVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC------------------EEEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE------------------EEEcCCCCCccEEEEEcCCCeEEEE
Confidence 4678999999766667776667889999987653210 0011122346678999755544 45
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEec-CCCCCEEEEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~ 501 (945)
-...+.|.++++++... .. .+.........+++.|.+.. ++++- +..+.|...+..|.....+. ..-...+.++
T Consensus 97 d~~~~~I~~~~~dG~~~-~~--l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcE-EE--EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence 45567899999876432 21 12234456789999997663 33333 23577888886665544442 2234568899
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
+++.. +.+.++-+..+.|..+|++.................+++. +..++.+-. +.+.|..++..+++....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 87743 3555555667889999987544443333334455677764 334444432 46788888887776655544
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.92 E-value=0.0019 Score=70.69 Aligned_cols=239 Identities=10% Similarity=0.124 Sum_probs=137.1
Q ss_pred cEEEEEEcCC--CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC---C-cEEEEe
Q 002264 408 SVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---K-LIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~~--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d---~-~i~vwd 481 (945)
....++|+|+ +..|..+...+.|+.++..++.... +.........++|+++|+ ++++.... . .+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence 4668999995 4455555444889999987765332 333445689999999999 55555422 1 233334
Q ss_pred -CCCce-EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-ec-CCCCeEEEEEEcCCCCEEEEEe
Q 002264 482 -LSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YD-APGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 -~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
..+.. ...+. .......+++++. ++.+.++-..++.|+.+|..++..... .. ........++++|+++.|+.+-
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 22211 01111 1223455666553 445555666778899998876554122 11 1222334799999999777664
Q ss_pred ecCCCCceEEEEeCC--CCce--eeEeccc--------------cCcceEEEEE---------cCCCCEEEEEECCCcEE
Q 002264 558 TSKDGDSFLVEWNES--EGTI--KRTYAGF--------------RKKSNGVVQF---------DTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~--~~~~--~~~~~~~--------------~~~~~~~~~~---------~~~~~~l~~~~~dg~i~ 610 (945)
. ..+.|+.++.. ++.. ...+.+. .-.....+++ .+++..+++-...+.|+
T Consensus 292 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 292 N---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp T---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred C---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 3 46789987764 3322 1122221 0012456888 66666555555678899
Q ss_pred EEECCCCeeEEEeecCCC----------------CCCccEEEEc-CCCCEEEEEECCCcEEEEECC
Q 002264 611 FWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-p~g~~l~~~~~dg~i~iw~~~ 659 (945)
.++. +|...... .... ......++++ ++|.++++-...+.|+.++++
T Consensus 369 ~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9985 55443332 2111 1224678888 566655555556778877653
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.92 E-value=0.0099 Score=69.79 Aligned_cols=230 Identities=9% Similarity=-0.001 Sum_probs=143.4
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC-----ceEEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~-----~~~~~~~~~~ 494 (945)
+|+.+ ....|+..++....... +......+..++|.+.+.. ++++-...+.|+.++..+ .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44433 34568888887654322 2234556889999986664 555666678888888544 2233333344
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.....|++.+.. ++++++-...+.|.+.+++.......+.........|++.|.+.+|+.+-.. ..+.|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 556788887643 3566666778899999987655544444444568899999987777766431 1367888888654
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~ 652 (945)
.....+.. .-.....+++++.+..|+.+. ..+.|..+++........+..........+|++. +..|+... ..+.
T Consensus 548 ~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 43333332 223577899998877877775 5568999998766555544432222233456653 34555544 4577
Q ss_pred EEEEECCCC
Q 002264 653 FKILANAIG 661 (945)
Q Consensus 653 i~iw~~~~~ 661 (945)
|...+..++
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 888887666
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.91 E-value=0.031 Score=58.45 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=137.9
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccccee-eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ-IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
..+.+|.|.+++..+++ +..|.| +...+.|+.-..... .......+.++.|.+ +. .++ ++.++.|..-...|+
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~--~~~-~g~~g~i~~S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE--GWI-VGEPPIMLHTTDGGQ 109 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE--EEE-EEETTEEEEESSTTS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce--EEE-EECCCeEEEECCCCC
Confidence 47899999888888875 467754 444555554332211 112345689999986 33 344 345665544323344
Q ss_pred eEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 486 KLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 486 ~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.-.... .+...+..+.+.. ++..++ ++.+|.|. .... +..-.. .......+..+.+.+++.+++++.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~--~~~~~~-~~~~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~--- 181 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG--NGSAEM-ITNVGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS--- 181 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE--TTEEEE-EETTCCEE--EESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET---
T ss_pred CceECccccCCCCCeEEEEEEC--CCCEEE-EeCCccEE--EEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC---
Confidence 333322 2334577777654 344444 44566542 2222 222211 122344688999999988776653
Q ss_pred CCCceEEE-EeC--CCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC--CCCCCccEE
Q 002264 561 DGDSFLVE-WNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--GGLPNLPRL 635 (945)
Q Consensus 561 d~~~~i~i-wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v 635 (945)
.+.++. .|- .+.+.+ .......+..+.+.+++.. +.++.+|.+++.+.+.++.-..+... .....+.++
T Consensus 182 --~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 182 --RGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDGRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp --TSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTSCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred --CCcEEEEeCCCCCceeEC---CCCCCCccceeEECCCCCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 344443 342 222332 1222235777888888764 45667788877653334443333322 111257889
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
++.+++..++++. +|.| ++....+ .....+.... .....+..+.|.++++.++
T Consensus 256 ~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~--~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 256 AYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVK--KVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp EESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGT--TSSSCCCEEEEEETTEEEE
T ss_pred EecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccC--CCCCCeEEEEEECCCceEE
Confidence 9998887776654 6666 3444444 2222111100 0112356677765555444
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.83 E-value=0.0046 Score=63.62 Aligned_cols=185 Identities=12% Similarity=0.189 Sum_probs=119.2
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecC--Ccc---EEEEEE-c--CCeEEEEEccCCC-eeEEecC-
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIFSTA-I--DGKIKAWLYDTMG-SRVDYDA- 536 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~iwd~~~~~-~~~~~~~- 536 (945)
+++...+.+-+.+||.+|+.+..+.. +.++.+...|.- +|+ ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56666778899999999999998864 557777665421 111 223333 3 5789999875222 2333311
Q ss_pred -----CC-CeEEEEEE--cCC-CC-EEEEEeecCCCCceEEEEeCC-------CCceeeEeccccCcceEEEEEcCCCCE
Q 002264 537 -----PG-HWCTTMLY--SAD-GS-RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 537 -----~~-~~i~~~~~--s~~-~~-~l~~~~~~~d~~~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945)
.. ..+..+++ +|. ++ ++++.. +++.+..|++. +.+.+++|.... .+..+.+.+....
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 34556777 774 44 344443 36889888872 345677776543 5778889998899
Q ss_pred EEEEECCCcEEEEECC-----CCeeEEEeecCCCCCCccEEEE--cCCCC-EEEEEE-CCCcEEEEECC
Q 002264 600 FLAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--sp~g~-~l~~~~-~dg~i~iw~~~ 659 (945)
|+.+-++.-|+.++.+ ++..+..+....-...+..+++ .++++ +|++++ .+.++.+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777777755 3455655543322235778888 45555 566655 56799999996
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0053 Score=67.11 Aligned_cols=244 Identities=10% Similarity=0.091 Sum_probs=137.9
Q ss_pred cEEEEEEcC-CCCEEEEE-ECCCcEEEEEccCCcccccceee-ccccccEEEEEE-------ecCCCeeEEEEEeCCC--
Q 002264 408 SVSRVAWSP-DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAF-------AYPNKLLCVVTCGDDK-- 475 (945)
Q Consensus 408 ~V~~i~~s~-~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~~-------s~~~~~~~l~s~s~d~-- 475 (945)
....|+|+| ++..|..+ ...+.|++.|.+++.... +... .........++| +++|.. ++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 35545444 444678888888754332 1111 112335899999 999984 44444332
Q ss_pred -----cEEEEe-CC-CceE-----EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-------CCCe------
Q 002264 476 -----LIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS------ 530 (945)
Q Consensus 476 -----~i~vwd-~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------ 530 (945)
.|.+.+ .. |... ..+... .....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666 22 2221 122211 12345666654 44666677788899999987 4433
Q ss_pred -----e-EEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCcee--eEeccc---c---C--------
Q 002264 531 -----R-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIK--RTYAGF---R---K-------- 585 (945)
Q Consensus 531 -----~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~--~~~~~~---~---~-------- 585 (945)
. ..+.. .......++|+|+|+.|+.+-. ....|+.++. .++... ..+.+. . +
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 11222 2345678999999997666543 3778888554 333221 222221 0 0
Q ss_pred cceE-EEEEc-------CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC----------------------CCCccEE
Q 002264 586 KSNG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----------------------LPNLPRL 635 (945)
Q Consensus 586 ~~~~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~v 635 (945)
.... .++.. .++.++++=...+.|+.++ .+|. +.++.+.+. ......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0133 45554 4455555555778899998 4564 334432210 1224578
Q ss_pred EEcCC-CCEEEEEECCCcEEEEECCCC
Q 002264 636 RFSKE-GNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~-g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++ |.+.++=.....|+.++++..
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 665555555778888888654
No 297
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.0045 Score=67.68 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=93.7
Q ss_pred CcEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 345 STVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.....++|+| ++.+|.++ ...+.|..+|..++.... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 3678899998 45544444 334889999987654321 1123456889999999996666
Q ss_pred EEC-CC----cEEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEeCCCceEEEe-cC-CCC
Q 002264 424 AFT-KH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWELSGRKLFNF-EG-HEA 495 (945)
Q Consensus 424 ~~~-dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~-~~~ 495 (945)
+.. ++ .+.+.+. .+.... ...+. .......++++| +|. ++++-..++.|..++..+.....+ .. ...
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 654 22 2333443 332221 01222 123456788999 566 666666778999999544433222 21 223
Q ss_pred CEEEEEeeecCCcc-EEEEEEcCCeEEEEEccC
Q 002264 496 PVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 496 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 527 (945)
....++|++ +++ ++++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 467888877 556 455555678899988764
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.74 E-value=0.0052 Score=67.18 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=129.5
Q ss_pred CcEEEEEEeCC--CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 345 STVISMDFHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~--g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....+++|+|+ +..|.++ ...+.|+.+|..+++... +.+.......++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 35779999995 3334444 333899999987765432 222345688999999999444
Q ss_pred EEECC---Cc-EEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cC-CC
Q 002264 423 VAFTK---HL-IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EG-HE 494 (945)
Q Consensus 423 s~~~d---g~-i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~-~~ 494 (945)
+.... .. +...+...+. .. ...+. .-.....+++.| +|. ++++-..++.|+.+| .++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 11 3333332221 10 01111 233456788999 665 555666678899999 556652322 21 12
Q ss_pred CCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCe----eEEecCC---------------CCeEEEEEE--------
Q 002264 495 APVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGS----RVDYDAP---------------GHWCTTMLY-------- 546 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------------~~~i~~~~~-------- 546 (945)
..-..++|++ +++ ++++-...+.|+.++++.... ...+... -.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 2234688876 455 455555678899988763211 1111111 113567888
Q ss_pred -cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc--------C---------cceEEEEEc-CCCCEEEEEECCC
Q 002264 547 -SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------K---------KSNGVVQFD-TTQNHFLAVGEDS 607 (945)
Q Consensus 547 -s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--------~---------~~~~~~~~~-~~~~~l~~~~~dg 607 (945)
.++|...++-. +.+.|+.++. ++... ++.+.. . .....++++ +++..+++=...+
T Consensus 351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 351 EEDEYDFYFCDR----DSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp SSCCEEEEEEET----TTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cCCCCcEEEEEC----CCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 56665555433 3678998885 55433 332210 0 125567888 4444333333556
Q ss_pred cEEEEEC
Q 002264 608 QIKFWDM 614 (945)
Q Consensus 608 ~i~iwd~ 614 (945)
.|+.+++
T Consensus 425 rIr~i~~ 431 (433)
T 4hw6_A 425 RVRKIAP 431 (433)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 6766654
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.73 E-value=0.05 Score=54.74 Aligned_cols=252 Identities=10% Similarity=0.126 Sum_probs=145.9
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
...+.+.|+..+.......-. ..+.-.+|..+.++.-. ...+.+||+++.+.++...... .|.-=.|-. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis-~~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECS-SS
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecC-CC
Confidence 447889999886654332221 22355789888887776 6789999999999998887753 455555544 35
Q ss_pred EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCc
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (945)
.|+..+. ..|+-|++.......+.+..+..-
T Consensus 119 ~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEES-SEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 6666554 489999987543444444333221
Q ss_pred cCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-------cCeEEEEeecC
Q 002264 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHR 795 (945)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-------dg~i~lw~~~~ 795 (945)
....|.....+++.++++..|- .|.+.+|.+++
T Consensus 150 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 150 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 1123344444455555443332 36677776543
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC---CCceEEecC----CCeEEEEeccCc---e--
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT----GGKISLFNMMTF---K-- 863 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~---dg~~la~~s----d~~i~iwd~~~~---~-- 863 (945)
.. ...+.| |......+.+.- ..++++.+. .++++|.++... .
T Consensus 190 ~~------------------------sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~ 243 (365)
T 2xzh_A 190 KV------------------------SQPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 243 (365)
T ss_dssp TE------------------------EEEECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC
T ss_pred cc------------------------cceeee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC
Confidence 21 111222 322222222111 112333332 257888887432 1
Q ss_pred ----EEEEecC---CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 864 ----VMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 864 ----~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
.+..+-. ..+-.-++..|+ .-.++..-+.-|.|++||+++|.++..-+--.+.|..-+-..+..=++.....
T Consensus 244 f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~ 322 (365)
T 2xzh_A 244 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 322 (365)
T ss_dssp CCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred cccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCC
Confidence 1111111 234477888888 77789999999999999999999988766556666555554444444445566
Q ss_pred ceE
Q 002264 937 AQV 939 (945)
Q Consensus 937 g~i 939 (945)
|.|
T Consensus 323 GqV 325 (365)
T 2xzh_A 323 GQV 325 (365)
T ss_dssp CEE
T ss_pred CEE
Confidence 654
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.72 E-value=0.052 Score=54.63 Aligned_cols=238 Identities=13% Similarity=0.132 Sum_probs=146.7
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
+...+|..+ ++|.-. ..++.|+|+++.+.+... . ....|.-=.|-.+ +.|+..+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~-----------------~---~~e~VvfWkWis~-~~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH-----------------T---MTDDVTFWKWISL-NTVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEE-----------------E---CSSCEEEEEECSS-SEEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcce-----------------e---cCCccEEEEecCC-CeEEEEc-CC
Confidence 344588877 677665 678999999998776431 1 1346777777644 4555554 35
Q ss_pred cEEEEEccCCcccccceeeccc----cccEEEEEEecCCCeeEEEEEe------CCCcEEEEeCCCceEEEecCCCCCEE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
.|+-|++.+...... .+..| ...|..-..+++.+. ++++|= -.|.+.+|..+.+.-+.+.||...-.
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 203 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecccccceeeeeeeeeE
Confidence 699999986433322 33333 346777888888885 333332 23678899977777788888877655
Q ss_pred EEEeeecCC-ccEEEEEEc---CCeEEEEEccCC---Cee-----EEecC----CCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 499 SICPHHKEN-IQFIFSTAI---DGKIKAWLYDTM---GSR-----VDYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 499 ~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~~~-----~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+.+..... ..+++.+.. .+.+++-++... ... ..+.. ..+...++..++.-..++..+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---- 279 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 279 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----
Confidence 554322211 123333332 258888888543 111 11111 1334567778887777777764
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
-|.+++||+.++.++..-+-... .+...+......-+++...+|.|.--.++...
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 89999999999998876655444 44444444444556666677766665555443
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.66 E-value=0.083 Score=55.43 Aligned_cols=252 Identities=12% Similarity=0.144 Sum_probs=147.0
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
...+.+.|+.++..+..-.- ...+.-.+|..+.++.-. ...+.+||+++...++...... .|.-=.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 45789999988665433222 123356788888777765 6789999999999998887654 4555555433 4
Q ss_pred EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCc
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (945)
.|+..+ +..|+-|++.......+.+..+..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 566555 4589999986543344444332221
Q ss_pred cCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-------cCeEEEEeecC
Q 002264 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHR 795 (945)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-------dg~i~lw~~~~ 795 (945)
....|.....++++++++..|- .|.+.+|.++.
T Consensus 149 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 149 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 1123444444555555543332 36677776543
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCC---CceEEecC----CCeEEEEeccCc------
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF------ 862 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d---g~~la~~s----d~~i~iwd~~~~------ 862 (945)
.. ...+.| |......+.+.-+ .++++.+. .++++|.++...
T Consensus 189 ~~------------------------sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~ 242 (494)
T 1bpo_A 189 KV------------------------SQPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (494)
T ss_dssp CC------------------------EEEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC
T ss_pred cc------------------------cchhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC
Confidence 22 111222 3333322222111 12333332 367999988532
Q ss_pred --eEEEE-ec---CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 863 --KVMTT-FM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 863 --~~~~~-~~---~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
+.... +- ...+-..++..|+ .-.++..-+.-|.|++||+++|.++..-+--.+.|..-+-.....=++.....
T Consensus 243 f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~ 321 (494)
T 1bpo_A 243 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 321 (494)
T ss_dssp CCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccC
Confidence 11111 11 1234477889998 77789999999999999999999987766555666555544444444445555
Q ss_pred ceE
Q 002264 937 AQV 939 (945)
Q Consensus 937 g~i 939 (945)
|.|
T Consensus 322 GqV 324 (494)
T 1bpo_A 322 GQV 324 (494)
T ss_dssp CEE
T ss_pred ceE
Confidence 554
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=0.029 Score=61.32 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=96.3
Q ss_pred cEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-------cCC
Q 002264 346 TVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-------SPD 417 (945)
Q Consensus 346 ~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~-------s~~ 417 (945)
....|+|+| ++..|+++-...+.|++.|..++...... ..-.+.......++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~----------------~~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL----------------NINTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE----------------CCTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE----------------ccCccccCCCcEEEEeecccccCCC
Confidence 578999999 45556666555567888888776543210 001112346899999 999
Q ss_pred CCEEEEEECCC-------cEEEEEccC-Ccccc-c-ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C----
Q 002264 418 GNYVGVAFTKH-------LIQLYSYAG-SNDLR-Q-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---- 482 (945)
Q Consensus 418 g~~las~~~dg-------~i~vwd~~~-~~~~~-~-~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~---- 482 (945)
|++|+++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777666544 255665443 22210 0 0112111 23457888996553 566677788899999 5
Q ss_pred ---CCce-----------EEE-ec-CCCCCEEEEEeeecCCccE-EEEEEcCCeEEEEEccC
Q 002264 483 ---SGRK-----------LFN-FE-GHEAPVYSICPHHKENIQF-IFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 483 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~ 527 (945)
++.. ... +. +.....+.++|+| +|+. +++-+..+.|+.++.+.
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 4443 112 11 2233457899877 4564 55556678899877654
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.57 E-value=0.02 Score=59.01 Aligned_cols=199 Identities=12% Similarity=0.185 Sum_probs=125.0
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC----CCe--eEEEEEeC--CCcEEEEe--CCCce
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----NKL--LCVVTCGD--DKLIKVWE--LSGRK 486 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~--~~l~s~s~--d~~i~vwd--~~~~~ 486 (945)
...+++....++-+.+||+ +|+.+. .+.. +.+..+..-|+ |+. +.+++... +++|.+|+ .....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~---~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLH---SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEE---EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEE---EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455666667788999999 666665 3332 45666666552 322 23455555 68999996 23344
Q ss_pred EEEecC------CC-CCEEEEEeeecC-Cc-cEEEEEEcCCeEEEEEccC-------CCeeEEecCCCCeEEEEEEcCCC
Q 002264 487 LFNFEG------HE-APVYSICPHHKE-NI-QFIFSTAIDGKIKAWLYDT-------MGSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 487 ~~~~~~------~~-~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
+..+.. .. ..++.+|+..++ .+ .++++...+|.+..|++.. .+.+.++... ..+..+...+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCC
Confidence 655532 11 557778873332 23 3788889999999998842 2233344443 467788888888
Q ss_pred CEEEEEeecCCCCceEEEEeCC-----CCceeeEec-cccCcceEEEEE--cCCCC-EEEEEE-CCCcEEEEECC-CCee
Q 002264 551 SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYA-GFRKKSNGVVQF--DTTQN-HFLAVG-EDSQIKFWDMD-NVNI 619 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~-----~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~ 619 (945)
..|+.+-. +..|..++.. +++.+..+. ++-...+..+++ .++++ ++++++ .++.+.+||.. +.+.
T Consensus 192 g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 192 GRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp TEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred CeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 88888753 4557777754 345555543 222224677777 45555 677776 67799999996 6677
Q ss_pred EEEeecC
Q 002264 620 LTSTDAE 626 (945)
Q Consensus 620 ~~~~~~~ 626 (945)
+..+...
T Consensus 268 vg~f~Ig 274 (355)
T 3amr_A 268 VADFRIT 274 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7777543
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.56 E-value=0.013 Score=59.69 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=108.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccc--cCCCccEEEEEE---cCCCCE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF--KDVPISVSRVAW---SPDGNY 420 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~i~~---s~~g~~ 420 (945)
-..+++|.+.+..++++.-..++|..|+...+..... .+. .+. ......+..|.| .|++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-------------~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-------------GASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-------------TTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-------------CccccCCCcceeeEEEEeccCCCCcE
Confidence 4567899886665555555789999999875543211 000 000 011224689999 688888
Q ss_pred EEEEEC-------------CCcEEEEEcc---CCcccccceeecccc-----------ccEEEEEEecCCCeeEEEEEeC
Q 002264 421 VGVAFT-------------KHLIQLYSYA---GSNDLRQHSQIDAHV-----------GAVNDLAFAYPNKLLCVVTCGD 473 (945)
Q Consensus 421 las~~~-------------dg~i~vwd~~---~~~~~~~~~~~~~h~-----------~~v~~l~~s~~~~~~~l~s~s~ 473 (945)
+++... +..|..||+. +++.+... .+.... .....++..++|+ ..++++.
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~ 156 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL 156 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence 876442 5779999999 77655322 222211 2488999999999 7788888
Q ss_pred C-CcEEEEeCCCceEEEecC------CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 474 D-KLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 474 d-~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
. +.|...+..|+.+..+.. .....+.|+++| +|..|++....|.+..+|+...
T Consensus 157 ~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 157 GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 8 888888876765444321 122366889877 5567777766999999998853
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.50 E-value=0.00055 Score=79.96 Aligned_cols=225 Identities=8% Similarity=0.005 Sum_probs=128.3
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC----ceE-EEecCCCCCEEEEE
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKL-FNFEGHEAPVYSIC 501 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~----~~~-~~~~~~~~~v~~~~ 501 (945)
.+.|+..++.+.+.... + .....+..++|.+.+.. ++++-...+.|+.++..+ ... ..+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~---~-~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECC---S-CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceee---e-ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 45688888876543321 1 22335678999987774 444445567899998443 211 11111122345677
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
+.+. ++.++++-...+.|.+++++.......+.........+++.|.+.+|+.+.. ...+.|..+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEEE
Confidence 6544 3455556566788999987755444333333344577889997776665532 112678777765332 22222
Q ss_pred cccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
...-.....+++++++..|+.+. ..+.|..+++........+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11122456799999876666655 667899999875444433332211123356666544 3444555568899999877
Q ss_pred C
Q 002264 661 G 661 (945)
Q Consensus 661 ~ 661 (945)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 6
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.50 E-value=0.00066 Score=79.31 Aligned_cols=211 Identities=11% Similarity=-0.044 Sum_probs=122.2
Q ss_pred ccEEEEEEcCCCCEEEEEE-CCCcEEEEEccCC---cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC
Q 002264 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~~---~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~ 482 (945)
..+..++|++.+..|..+. ..+.|+.+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 3466789999777666554 4578999998751 11111 11112223556888865553 4555556788999996
Q ss_pred CCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 483 SGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 483 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+.....+.. .......+++.|.. +.++++-... +.|..++++.................|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 6665554432 23445677876642 3334333222 67777776543333322222334568999998877776643
Q ss_pred CCCceEEEEeCCCCceeeEeccc-cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+.+.|..+++........+... .......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 4678999998643332222211 1112334555443 3444445678899999888887776643
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.47 E-value=0.1 Score=54.77 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=146.6
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
+...+|..+ ++|.-. ..++.|+|+++.+.+... .+ ...|.-=.|-.+ +.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~-----------------~~---~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH-----------------TM---TDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEE-----------------EC---SSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcce-----------------ec---CCCceEEEecCC-CeEEEEc-CC
Confidence 455678777 577654 689999999988776431 11 235666666543 4555553 45
Q ss_pred cEEEEEccCCcccccceeeccc----cccEEEEEEecCCCeeEEEEEe------CCCcEEEEeCCCceEEEecCCCCCEE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
.|+-|++.+...... .+..| ...|..-..+++.+. ++++|= -.|.+.+|..+.+.-+.+.||...-.
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 799999976433222 33333 346778888889885 333332 24678899977777788888877665
Q ss_pred EEEeeecCC-ccEEEEEEcC---CeEEEEEccCC---Ce-----eEEecC----CCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 499 SICPHHKEN-IQFIFSTAID---GKIKAWLYDTM---GS-----RVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 499 ~~~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+.+..... ..+++.+... +.+++-++... .. ...+.. ..+...++..++....++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 554422111 1234444332 78889888543 11 111111 2334567888888888877774
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
-|.+++||+.++.++..-+-... .+...+......-++.....|.|.--.++....
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 89999999999998876554444 444444445555566666666665555554443
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.22 E-value=0.05 Score=57.49 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=61.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---CCE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---g~~ 420 (945)
-...+.++|.|+|+ ++++ ..+|.|.+++ +++... +. +. .+..........|+|+|+ +..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~---~~--~~---------~v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLST---YA--EL---------SVYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEE---EE--EC---------CCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccE---ee--cc---------eEeecCCCCceeEEECCCCCCCCE
Confidence 44788999999998 5555 5579999998 343210 00 00 012223456889999998 555
Q ss_pred EEEEEC-C-----CcEEEEEccCCcc--cccc-eeec---cccccEEEEEEecCCCeeEEEEE
Q 002264 421 VGVAFT-K-----HLIQLYSYAGSND--LRQH-SQID---AHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 421 las~~~-d-----g~i~vwd~~~~~~--~~~~-~~~~---~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
|..+.. . +.|..|+...+.. .+.+ ..+. +.......++|.|||. +.++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 544433 2 5688888765321 1111 1122 1111236899999997 44543
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.20 E-value=0.1 Score=55.09 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---CCE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---g~~ 420 (945)
-...+.++|.|+|+ ++++ ..+|.|.+++ .+++... ..+ .+..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~-~~~--------------~v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLV-ASF--------------DVANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEE-EEC--------------CCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEe-ecc--------------ceeecCCCceeeEEeCCCCCcCCE
Confidence 45789999999997 5555 5569999887 3443110 000 011222356889999997 445
Q ss_pred EEEEEC----C----CcEEEEEccCCc-cc---ccc-eeec-cccccEEEEEEecCCCeeEEEEEeC-------------
Q 002264 421 VGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------- 473 (945)
Q Consensus 421 las~~~----d----g~i~vwd~~~~~-~~---~~~-~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~------------- 473 (945)
|..+.. + ..|..|+...+. .+ +.+ ..+. ........++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 444432 3 567777776541 11 111 0111 1111246799999997 4554332
Q ss_pred CCcEEEEeCCCc----------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCC-----------
Q 002264 474 DKLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG----------- 529 (945)
Q Consensus 474 d~~i~vwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------- 529 (945)
.+.|.-++..|+ .+.. .++. ....++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554443 1221 2332 2456777663 234443332221 13222 2111
Q ss_pred -------eeEEecCCCCeEEEEEEc-------CCCCEEEEEeecCCCCceEEEEeCCCC-cee--eEeccccCcceEEEE
Q 002264 530 -------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVVQ 592 (945)
Q Consensus 530 -------~~~~~~~~~~~i~~~~~s-------~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~ 592 (945)
....+.........++|. .+|.++++.. ..+.|...++... +.. ..+.......+..++
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 112221123356778884 4565555443 2567888887653 222 222211123577788
Q ss_pred EcCCCCEEEEEE
Q 002264 593 FDTTQNHFLAVG 604 (945)
Q Consensus 593 ~~~~~~~l~~~~ 604 (945)
+.|+|...++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 888886555543
No 310
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.13 E-value=0.00049 Score=53.73 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHhhCCCC
Q 002264 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFF 36 (945)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (945)
|+..+.||+.||..||.|.||..||-+|++||.|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 788999999999999999999999999999999864
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.08 E-value=0.33 Score=49.48 Aligned_cols=166 Identities=8% Similarity=0.084 Sum_probs=106.0
Q ss_pred eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC-CceEEE-ecC----CCC--CEEEEEee-ecCCccEEEEEE--
Q 002264 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFN-FEG----HEA--PVYSICPH-HKENIQFIFSTA-- 515 (945)
Q Consensus 447 ~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~-~~~~~~-~~~----~~~--~v~~~~~~-~~~~~~~l~s~~-- 515 (945)
+........+++|.+.... ++++.-..++|..||.. +..... +.+ ... .+..+.|. .+++++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~-~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQV-FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTE-EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCE-EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3334444567899886662 44444478999999944 443322 222 111 35677772 022456666543
Q ss_pred -----------cCCeEEEEEcc---CCCeeEEecCC-------------CCeEEEEEEcCCCCEEEEEeecCCCC-ceEE
Q 002264 516 -----------IDGKIKAWLYD---TMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGD-SFLV 567 (945)
Q Consensus 516 -----------~dg~i~iwd~~---~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~~~d~~-~~i~ 567 (945)
.+..|..||+. +++........ ......++..++|+..++.+. . +.|.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~----~~~~I~ 162 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL----GMPAIA 162 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE----SSCEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC----CCCeEE
Confidence 26789999998 77766654431 135889999999999888776 5 6777
Q ss_pred EEeCCCCceeeEecc----ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 568 EWNESEGTIKRTYAG----FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 568 iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
.++.........+.. ......+.++++|+++.|++....|.|..+|+.+.
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 777654322211111 11123567999999999999877999999998853
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.07 E-value=0.05 Score=57.50 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=113.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccccee---eccccccEEEEEEecC---CCeeEEEEEeCC-----C
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYP---NKLLCVVTCGDD-----K 475 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~~s~~---~~~~~l~s~s~d-----~ 475 (945)
.....++|.|+|+++++ ..+|.|.+++ +++. ..+.. ..........|+|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 35679999999995554 5679999988 3431 11111 1122456889999998 553 33333322 5
Q ss_pred cEEEEe-CCCc-----eE-EEec---CCCCCEEEEEeeecCCccEEEEEEc-------------CCeEEEEEccCC----
Q 002264 476 LIKVWE-LSGR-----KL-FNFE---GHEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM---- 528 (945)
Q Consensus 476 ~i~vwd-~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~---- 528 (945)
.|..|+ ..+. .+ ..+. +.......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 677787 4331 11 1132 1111235677766 5555555432 145555554320
Q ss_pred --------CeeEEecCCCCeEEEEEEcC-CCCEEEEEeecCCC-----CceEEEEeCCC----------------Cceee
Q 002264 529 --------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDG-----DSFLVEWNESE----------------GTIKR 578 (945)
Q Consensus 529 --------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~-----~~~i~iwd~~~----------------~~~~~ 578 (945)
.....+...-.....++|+| ++..+++ -...+. ...|.+..... ..+..
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~-d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSS-EHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEE-EECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEE-EcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00011111112356789999 5554443 321111 01244332211 01122
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee------EEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI------LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
.+..+ . ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.+.++..
T Consensus 263 ~~~~~-~-ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQG-F-PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTC-C-CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCC-C-CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 22111 1 2445666 3455555444566777777654321 111211 123678999999997766653
No 313
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=97.07 E-value=0.00082 Score=60.65 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=73.4
Q ss_pred CHHHHHHHHcCCCCCCCccc---hhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 002264 49 DWDEVEKYLSGFTKVDDNRY---SMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (945)
Q Consensus 49 ~w~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (945)
+++++...|..+.....+.+ ...++|+|+.|.||||+..|..++|..|+.+.-..+...+.+.+++|+.+....+..
T Consensus 26 ~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~ 105 (156)
T 2nxp_A 26 MYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMK 105 (156)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHT
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHh
Confidence 35555555555432222222 234899999999999999999999999999877767667789999999998888887
Q ss_pred chhhhcccCC-------chHHHHHHHHHHHh
Q 002264 126 ENEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 126 ~~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
+++....+.. +..+-..|+..|++
T Consensus 106 ~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~ 136 (156)
T 2nxp_A 106 GNETMLDFRTSKFVLRISRDSYQLLKRHLQE 136 (156)
T ss_dssp TCGGGGGGCGGGSEEEEEHHHHHHHHHHHTT
T ss_pred hcHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 7777766654 34445677776665
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.06 E-value=0.16 Score=53.66 Aligned_cols=230 Identities=11% Similarity=-0.008 Sum_probs=117.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee---ccccccEEEEEEecC---CCeeEEEEEeC---C---
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYP---NKLLCVVTCGD---D--- 474 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~~---~~~~~l~s~s~---d--- 474 (945)
.....++|.|+|++++ +..+|.|++++ .+++ ..+..+ .........|+|+|+ +.. +.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence 3577899999998555 45679999987 3443 221111 122356889999998 553 3333331 3
Q ss_pred -CcEEEEeCCCc--------eE-EEecC-CCCCEEEEEeeecCCccEEEEEEc-------------CCeEEEEEccCC--
Q 002264 475 -KLIKVWELSGR--------KL-FNFEG-HEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM-- 528 (945)
Q Consensus 475 -~~i~vwd~~~~--------~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~-- 528 (945)
..|..|+.++. .+ ..+.. .......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 56777773222 11 11221 111235677766 5666665432 244555544321
Q ss_pred -------CeeEEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCC--------C--------ceeeEecccc
Q 002264 529 -------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE--------G--------TIKRTYAGFR 584 (945)
Q Consensus 529 -------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~--------~--------~~~~~~~~~~ 584 (945)
..+.. ..+ .....++|+| +++.+++-. ..+....|.+..... + .++..+. +.
T Consensus 182 ~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~-g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 182 ADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEH-GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp TTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEEC-CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEec-CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 01111 111 2345789999 555444432 111112344332211 0 1122221 11
Q ss_pred CcceEEEEEc-------CCCCEEEEEECCCcEEEEECCCC-eeE--EEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 585 KKSNGVVQFD-------TTQNHFLAVGEDSQIKFWDMDNV-NIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 585 ~~~~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
......++|. .++.++++.-..+.|...++... ... ..+- ......+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 1245667773 45655555556778888888753 332 1221 11133688999999997666654
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.99 E-value=0.066 Score=55.24 Aligned_cols=230 Identities=10% Similarity=0.022 Sum_probs=112.1
Q ss_pred CCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CCCceE
Q 002264 418 GNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKL 487 (945)
Q Consensus 418 g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~~~~~ 487 (945)
+..++.|+.+ ..+..||+.+.+-.. ...+......-..+.+ ++. +++.|+.+ ..+.+|| .+++ -
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~-W 89 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQ-W 89 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTE-E
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCc-e
Confidence 4455556543 357888887754221 1112111111112222 454 66666644 3578888 4443 2
Q ss_pred EEecCCCCC--EEEEEeeecCCccEEEEEEcCC-----eEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEee
Q 002264 488 FNFEGHEAP--VYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 488 ~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~ 558 (945)
..+.....+ -.+++. . ++.+++.|+.++ .+.+||+.+..-...-..+. .....+. -+++.++.++.
T Consensus 90 ~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAV-L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EEECCCSSCCBSCEEEE-E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eeCCCCCccccceEEEE-E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 333221111 111221 1 446777777654 46778876654332211111 1112222 25666666665
Q ss_pred cCCC---CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeecCCCCC
Q 002264 559 SKDG---DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 559 ~~d~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+... ...+.+||+.+.+....-.......-..++. -++..++.|+.+ ..+.+||..+.+-...-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3468899998876544321111111112222 246667777653 4689999988765543322211
Q ss_pred CccEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg-----~i~iw~~~~~ 661 (945)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112122223677777777553 4788887765
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.95 E-value=0.046 Score=56.40 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=114.1
Q ss_pred CCCEEEEEE-CC-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CCC
Q 002264 417 DGNYVGVAF-TK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSG 484 (945)
Q Consensus 417 ~g~~las~~-~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~~ 484 (945)
++..++.|+ .+ ..+.+||..+++-.. ...+.........+. .++. +++.|+.+ ..+.+|| .++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVS--LHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEEE--ECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 358899987764221 111221111112222 2454 66667654 4688999 554
Q ss_pred c---eEEE--ecCCCCCEEEEEeeecCCccEEEEEEcCC-----eEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCE
Q 002264 485 R---KLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSR 552 (945)
Q Consensus 485 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~ 552 (945)
+ -... +.........+. . ++.+++.|+.++ .+.+||..+..-...-..+. .....+. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~--~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATT--L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEE--E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEE--E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 4 2211 111111111222 1 446777776543 57788877654332221111 1112222 25666
Q ss_pred EEEEeecCC-CCceEEEEeCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeec
Q 002264 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 553 l~~~~~~~d-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (945)
++.++.+.. ....+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+-...-..
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 666664221 1356889999887654432211111 1122222 45666677653 4689999988775544322
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
... .....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 241 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 221 11222222367777777755 34677777654
No 317
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=96.91 E-value=0.00034 Score=62.09 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=68.6
Q ss_pred CHHHHHHHHcCCCCCCCccc---hhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 002264 49 DWDEVEKYLSGFTKVDDNRY---SMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (945)
Q Consensus 49 ~w~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (945)
+++++...|..+.....+.+ ...++|+|+.|.||||+..| .++|..|+.+.-..+...+.+.+++|+.+....++.
T Consensus 9 ~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~ 87 (148)
T 2j49_A 9 NYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIK 87 (148)
T ss_dssp THHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHh
Confidence 35556666655533333322 23499999999999999999 999999998876666555667888888887777776
Q ss_pred chhhhcccCC-------chHHHHHHHHHHHh
Q 002264 126 ENEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 126 ~~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
+++....+.. +..+-..|+..|++
T Consensus 88 ~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~ 118 (148)
T 2j49_A 88 ENEVASAFQSHKYRITMSKTTLNLLLYFLNE 118 (148)
T ss_dssp HCHHHHHHHSSCEEEEECHHHHHHHHHHHHH
T ss_pred hCHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 6666555533 34444666666654
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.89 E-value=0.065 Score=55.23 Aligned_cols=191 Identities=9% Similarity=0.013 Sum_probs=95.0
Q ss_pred CCCEEEEEECC-----CcEEEEEccCCcc--cccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CC
Q 002264 417 DGNYVGVAFTK-----HLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (945)
Q Consensus 417 ~g~~las~~~d-----g~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~ 483 (945)
+++.++.|+.+ ..+.+||..+++. ......+.........+.+ ++. +++.|+.+ ..+.+|| .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 57777777754 3589999887651 1111122211122222222 455 56666643 3578888 44
Q ss_pred CceE--EEecCCCCCEEEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEE
Q 002264 484 GRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLF 554 (945)
Q Consensus 484 ~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~ 554 (945)
++-. ..+.........+. . ++.+++.|+.+ ..+.+||+.+..-...-..+.. ....+. -+++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 211 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV--A--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYV 211 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE--E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CeEEECCCCCCCcccceEEE--E--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEE
Confidence 4322 22221111111222 1 45677777765 3578888776543322111111 112222 2566666
Q ss_pred EEeecCCC-CceEEEEeCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCee
Q 002264 555 SCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNI 619 (945)
Q Consensus 555 ~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (945)
.++.+... ...+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+-
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 66643221 357899999887654432211111 1222222 56666777654 3577888877654
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.89 E-value=0.095 Score=54.12 Aligned_cols=228 Identities=7% Similarity=-0.015 Sum_probs=113.6
Q ss_pred CEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEe-CCCceEEEec
Q 002264 419 NYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 419 ~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd-~~~~~~~~~~ 491 (945)
.+++.|+. ...+.+||..+++-.. ...+......-..+. -++. +++.|+.+ ..+.+|| .+++- ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W-~~~~ 86 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSW-YSKL 86 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEE-EEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeE-EECC
Confidence 34555654 3468899988764221 111221111222222 2455 66667654 5688889 54432 2222
Q ss_pred C---CCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecC
Q 002264 492 G---HEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 492 ~---~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~ 560 (945)
. .......+. . ++.+++.|+.+ ..+.+||..+..-...-..+.. ....+. -+++.++.++.+.
T Consensus 87 ~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 87 GPPTPRDSLAACA--A--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLG 160 (306)
T ss_dssp CCSSCCBSCEEEE--E--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEES
T ss_pred CCCccccceeEEE--E--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCC
Confidence 1 111111222 1 44677777765 4578888876543322111111 112222 2566666666533
Q ss_pred CC-----CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeecCCCCC
Q 002264 561 DG-----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 561 d~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
.. ...+.+||+.+.+....-.......-..++.. ++..++.|+.+ ..+.+||..+.+-...-..+....
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 22 35688999988765433221111111122222 45666666643 468999998876443322221111
Q ss_pred CccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1222233 67778888754 45777887665
No 320
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=96.88 E-value=0.00048 Score=60.46 Aligned_cols=100 Identities=10% Similarity=0.174 Sum_probs=68.7
Q ss_pred CHHHHHHHHcCCCCCCCccc---hhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 002264 49 DWDEVEKYLSGFTKVDDNRY---SMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (945)
Q Consensus 49 ~w~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (945)
+++++...|..+.....+.+ ...++|+|+.|.||||+..|..++|..|+.+.-..+... .+.+++|+.+....+..
T Consensus 7 ~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 7 QMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 34455555544422222222 224899999999999999999999999999877667666 88999999988887777
Q ss_pred chhhhcccCC-------chHHHHHHHHHHHh
Q 002264 126 ENEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 126 ~~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
+++....+.. +..+-..|+..|++
T Consensus 86 ~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~ 116 (138)
T 2j4b_A 86 ENNFAYTFKNSKYHLSMGRYAFDLLINFLEE 116 (138)
T ss_dssp HCHHHHHHHHSCEEEEEEHHHHHHHHHHHHH
T ss_pred hCHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 6666554433 44555667766665
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.25 Score=50.88 Aligned_cols=233 Identities=6% Similarity=-0.087 Sum_probs=114.4
Q ss_pred CeEEEEEeCc--CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC----CcE
Q 002264 357 QTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLI 430 (945)
Q Consensus 357 ~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d----g~i 430 (945)
+++++.|+.+ ..+.+||..+++-..... +......-.++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEE--ECCEEEEEeCCCCCCcceE
Confidence 4577777653 578888887765332100 111111112222 267777777755 568
Q ss_pred EEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CCCceEEEecCCCCC--EEEEE
Q 002264 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRKLFNFEGHEAP--VYSIC 501 (945)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~~~~~~~~~~~~~~--v~~~~ 501 (945)
.+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+|| .+++ -..+.....+ -.+++
T Consensus 73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~ 146 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMV 146 (306)
T ss_dssp EEEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEE
T ss_pred EEEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEE
Confidence 889988764221 1122211111222222 555 66667655 4688899 4443 2222211111 11112
Q ss_pred eeecCCccEEEEEEc---------CCeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecCC-CCceEEEE
Q 002264 502 PHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKD-GDSFLVEW 569 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d-~~~~i~iw 569 (945)
. . ++.+++.|+. -..+.+||+.+..-...-..... ....+.+ +++.++.++.+.. ....+.+|
T Consensus 147 ~-~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 147 E-A--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp E-E--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEE
T ss_pred E-E--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEe
Confidence 1 1 4466677664 34477888876543322111111 1122222 5666666654221 12468899
Q ss_pred eCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEE
Q 002264 570 NESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILT 621 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 621 (945)
|+.+.+....-...... ...++.+ ++..++.|+.+ ..+.+||..+.+-..
T Consensus 222 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 222 DIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp ETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred eCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 99886544321111110 1222333 56677777743 468889988876443
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.74 E-value=0.25 Score=52.10 Aligned_cols=109 Identities=14% Similarity=0.251 Sum_probs=58.4
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---CCEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---g~~l 421 (945)
...+.|+|.|+|+++++ +...|.|++++.. +.... .+. +. . .+..........|+|+|+ +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--GV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--SC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--CC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 46899999999984344 4567999999853 32110 000 00 0 112223456789999996 4444
Q ss_pred EEE-EC-------CCcEEEEEccCCc-cc---ccc-eeec-----cccccEEEEEEecCCCeeEEEEE
Q 002264 422 GVA-FT-------KHLIQLYSYAGSN-DL---RQH-SQID-----AHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 422 as~-~~-------dg~i~vwd~~~~~-~~---~~~-~~~~-----~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
..+ +. ...|..|+++.+. .+ +.+ ..+. .|. ...++|.|||. +.++.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~--Lyv~~ 147 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY--LFIAL 147 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE--EEEEE
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc--EEEEE
Confidence 433 22 2346666665431 11 111 0111 132 35799999996 44443
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.74 E-value=0.55 Score=49.42 Aligned_cols=232 Identities=9% Similarity=0.023 Sum_probs=116.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccccee----eccccccEEEEEEecC---CCeeEEEEEeC-------
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ----IDAHVGAVNDLAFAYP---NKLLCVVTCGD------- 473 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~----~~~h~~~v~~l~~s~~---~~~~~l~s~s~------- 473 (945)
....|+|.|+|+.|.++...|.|++++.+. .....+.. ..........|+|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 467899999999444556789999998543 21111111 1122446789999996 553 3333222
Q ss_pred CCcEEEEe-CCC--c--eEEE-ecCC------CCCEEEEEeeecCCccEEEEEEcC-------------CeEEEEEccCC
Q 002264 474 DKLIKVWE-LSG--R--KLFN-FEGH------EAPVYSICPHHKENIQFIFSTAID-------------GKIKAWLYDTM 528 (945)
Q Consensus 474 d~~i~vwd-~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~ 528 (945)
...|..|+ ..+ . .... +... ......++|.+ +|.+.++.+.. |.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC--CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23466666 222 1 1111 1111 11235678766 56555554432 45666665432
Q ss_pred C------------eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---------------------
Q 002264 529 G------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--------------------- 575 (945)
Q Consensus 529 ~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--------------------- 575 (945)
- ....+...-.....++|+|+...|.++-...++...|.+. ..+.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccCcc
Confidence 0 1111111223577899999444444443211111122221 1110
Q ss_pred ----------eeeEeccccCcceEEEEEcC-------CCCEEEEEECCCcEEEEECCCCeeEEEeecC-CCCCCccEEEE
Q 002264 576 ----------IKRTYAGFRKKSNGVVQFDT-------TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRF 637 (945)
Q Consensus 576 ----------~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~ 637 (945)
++..+..+ . ....+.|.. ++.++++.-..+.|...++..+........- .....+..+++
T Consensus 253 ~~~~~~~~~~P~~~~~~~-~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDS-P-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CBSSCTTSCCCSEEESSC-C-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred cCCCCCCccCCeEEeCCC-c-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 01111111 1 345566653 3555555557778888888766544332211 11236889999
Q ss_pred cCCCCEEEEE
Q 002264 638 SKEGNLLAVT 647 (945)
Q Consensus 638 sp~g~~l~~~ 647 (945)
.|||.+.++.
T Consensus 331 ~pdG~lyv~t 340 (353)
T 2g8s_A 331 GPDGYLYVLT 340 (353)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999866543
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.62 E-value=0.83 Score=47.41 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec----CCCCCCccEEEEcCC---CCEEEEE-E--CCCcEEEE
Q 002264 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA----EGGLPNLPRLRFSKE---GNLLAVT-T--ADNGFKIL 656 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~v~~sp~---g~~l~~~-~--~dg~i~iw 656 (945)
....++|.|+|..+++--..|.|++++..++........ .........++++|+ ...|.+. + .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 467899999998666555589999998766654322111 112235689999995 3444443 2 34556666
Q ss_pred ECCC
Q 002264 657 ANAI 660 (945)
Q Consensus 657 ~~~~ 660 (945)
....
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 6554
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.58 E-value=0.19 Score=52.45 Aligned_cols=187 Identities=7% Similarity=0.069 Sum_probs=107.8
Q ss_pred EEEEEEecCCCeeEEEEE------------eCCCcEEEEe-CC-CceEEE--ecC-----CCCCEEEEEeeecCCcc--E
Q 002264 454 VNDLAFAYPNKLLCVVTC------------GDDKLIKVWE-LS-GRKLFN--FEG-----HEAPVYSICPHHKENIQ--F 510 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~------------s~d~~i~vwd-~~-~~~~~~--~~~-----~~~~v~~~~~~~~~~~~--~ 510 (945)
..+++..|+|. .++++ ..+|.|.++| .+ ...... +.+ .......+.+..+.++. +
T Consensus 52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566677665 44444 2688999999 42 112222 222 23467778876643343 3
Q ss_pred EEEEEc--CCeEEEEEccCCCeeE----EecC-CCCeEEEEEEcCCCCEEEEEeec-------------CCCCceEEEEe
Q 002264 511 IFSTAI--DGKIKAWLYDTMGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTS-------------KDGDSFLVEWN 570 (945)
Q Consensus 511 l~s~~~--dg~i~iwd~~~~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~~~~-------------~d~~~~i~iwd 570 (945)
+++-.. +.+|.+|+++...... .+.. .-...+.+.+.++|++.++.... ....+.++.+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 5678888877653322 2222 12367899999999877764310 11246777777
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-Cee--EEEeecCCCCCCccEEEEcC-CCCEEE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNI--LTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~v~~v~~sp-~g~~l~ 645 (945)
.. +......+. ...+.++|+|+++.++++. ..+.|+.|++.. +.. ...+... ...-.+++.+ +|++.+
T Consensus 210 ~~--~~~~~~~~l--~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--DVRVVAEGF--DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--CCEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCEEE
T ss_pred CC--eEEEeecCC--cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcEEE
Confidence 63 322222222 1467899999999888876 578899999863 332 2233221 2346677777 477666
Q ss_pred EEEC
Q 002264 646 VTTA 649 (945)
Q Consensus 646 ~~~~ 649 (945)
++..
T Consensus 283 a~~~ 286 (355)
T 3sre_A 283 GCHP 286 (355)
T ss_dssp EEES
T ss_pred EecC
Confidence 5543
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.58 E-value=0.78 Score=49.83 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=67.6
Q ss_pred CceeEEeecCCCceEEecC--CCeEEEEeccCc------e-------EEEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMTF------K-------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 832 ~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~------~-------~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
.....+.++|||+++++++ +.++.|+|.... + .....+ -.-.....+|.+ +|....+-.-|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3456688899999998887 678999987732 1 122333 233478899999 8876677779999
Q ss_pred EEEEecccc----------eEEEEecCCCcceeEEEe------cCCcceeeee
Q 002264 897 IHIYNVRVD----------EVKSKLKGHQKRITGLAF------STSLNILVSS 933 (945)
Q Consensus 897 v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~ 933 (945)
|.-|++... ..+..+.-|-.+ -.+.- .+||+||++.
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEe
Confidence 999999864 456666655432 22322 4778888875
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.46 E-value=0.13 Score=52.93 Aligned_cols=192 Identities=7% Similarity=0.004 Sum_probs=92.8
Q ss_pred CCCEEEEEECCC-----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEe-CCCc
Q 002264 417 DGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSGR 485 (945)
Q Consensus 417 ~g~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd-~~~~ 485 (945)
+++.++.|+.++ .+.+||..+.+-.. ...+.........+.+ ++. +++.|+.++ .+.+|| .+++
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 677777777543 58889987754221 1112211111222222 455 566666543 467788 4443
Q ss_pred eEEEecCCCCCE--EEEEeeecCCccEEEEEEcC-------CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEE
Q 002264 486 KLFNFEGHEAPV--YSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLF 554 (945)
Q Consensus 486 ~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~ 554 (945)
-..+.....+. .+++. . ++.+++.|+.+ ..+.+||+.+..-...-..+ ......+. -+++.++
T Consensus 136 -W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 136 -WFHVAPMNTRRSSVGVGV-V--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYA 209 (302)
T ss_dssp -EEEECCCSSCCBSCEEEE-E--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred -EeecCCCCCcccCceEEE-E--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEE
Confidence 22322211111 11221 1 44677776643 34778887765433221111 11112222 2566666
Q ss_pred EEeecCCC-CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeeE
Q 002264 555 SCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNIL 620 (945)
Q Consensus 555 ~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (945)
.++.+... ...+.+||+.+.+....-.......-..++. .++..++.|+.++ .+.+||..+.+-.
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 66642211 3468999998876543322111111111222 2566667776543 4788888776543
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.46 E-value=0.27 Score=50.86 Aligned_cols=227 Identities=9% Similarity=-0.024 Sum_probs=108.6
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-----C--C----cEEEEe-CCCceEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----D--K----LIKVWE-LSGRKLF 488 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-----d--~----~i~vwd-~~~~~~~ 488 (945)
++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . . .+.+|| .+++ -.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~ 80 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WL 80 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCe-EE
Confidence 44454 468899988765321 12222112222233334566 6666663 1 1 266788 4443 33
Q ss_pred EecCCCCCEE--EEEeeecCCccEEEEEEcC--------CeEEEEEccCCCeeEEecCCCCeE-EEEEEcCCCCEEEEEe
Q 002264 489 NFEGHEAPVY--SICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCG 557 (945)
Q Consensus 489 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~ 557 (945)
.+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.... .+++. -+++.++.++
T Consensus 81 ~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred ECCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeC
Confidence 3322211111 1121 1 44677777642 357888887654222111111111 12222 3556666665
Q ss_pred ecC--CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeeEEEeecCCCCC
Q 002264 558 TSK--DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 558 ~~~--d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
... .....+.+||+.+.+....-..........++. -++..++.|+.++ .+.+||..+.+-...-..+..
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 411 113468999998765443221111111112222 2566777777544 488899988765544332221
Q ss_pred CccEEEEcCCCCEEEEEECCC--------------cEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADN--------------GFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg--------------~i~iw~~~~~ 661 (945)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 234 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 112122222667777777532 3567777655
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.42 E-value=1.1 Score=46.58 Aligned_cols=206 Identities=11% Similarity=0.069 Sum_probs=115.1
Q ss_pred cEEEEEEcCCCCEEEEEE------------CCCcEEEEEccCCc-ccccceeecc-----ccccEEEEEEec--CCCeeE
Q 002264 408 SVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSN-DLRQHSQIDA-----HVGAVNDLAFAY--PNKLLC 467 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~------------~dg~i~vwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~s~--~~~~~~ 467 (945)
....++..|+|..+++++ .+|.|.++|.++.. ..+.+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455667788886666552 68999999987431 12222 2222 234677788766 454323
Q ss_pred EEEEeC--CCcEEEEe--CCCceE---EEecCC-CCCEEEEEeeecCCccEEEEEEc-----------------CCeEEE
Q 002264 468 VVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKA 522 (945)
Q Consensus 468 l~s~s~--d~~i~vwd--~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i 522 (945)
+++-.. +.+|.+|+ ..+... ..+.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56788887 333332 333332 23578888866 5566665431 234444
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-Cce--eeEeccccCcceEEEEEcC-CCC
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQN 598 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~ 598 (945)
+| .++.. .....-...+.++|+||++.++++.. ..+.|+.|++.. +.. .+.+.. ......+++++ +|+
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 44 33222 22222234688999999999888764 367899999863 332 223321 23567789999 588
Q ss_pred EEEEEECC-CcEEEEECC--CCeeEEEee
Q 002264 599 HFLAVGED-SQIKFWDMD--NVNILTSTD 624 (945)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 624 (945)
..+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 77766533 344444443 244444443
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.32 E-value=0.32 Score=59.15 Aligned_cols=96 Identities=7% Similarity=0.074 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
...|.|.|+.++..+..-.- ...+.-.+|..+.++.-. ...+.|||+.+...++...... +|.-=.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCC-C
Confidence 45788899888654422211 122345788877666654 6789999999988877776543 4554455433 4
Q ss_pred EEEEEECCCcEEEEECCCCccccccc
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (945)
.|+..+ +..|.-|++.....+.+.+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHH
Confidence 555544 3489999996543333333
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.21 E-value=0.47 Score=49.11 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=106.3
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC----CC-------cEEEEeCCCceEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----DK-------LIKVWELSGRKLF 488 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~----d~-------~i~vwd~~~~~~~ 488 (945)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.+||.....-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37889988765322 11211111112222334565 6677773 12 1667883333333
Q ss_pred EecCCCCC--EEEEEeeecCCccEEEEEEcC-------CeEEEEEccCCCeeEEecCCCCeE-EEEEEcCCCCEEEEEee
Q 002264 489 NFEGHEAP--VYSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCGT 558 (945)
Q Consensus 489 ~~~~~~~~--v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~ 558 (945)
.+.....+ -.+++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.... .+++. .+++.++.++.
T Consensus 92 ~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGE-V--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEE-E--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCE
T ss_pred ECCCCCccccccceEE-E--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCC
Confidence 33221111 112221 1 44677777754 246777776654332211121111 12222 45666666664
Q ss_pred cCC--CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeecCCCCCC
Q 002264 559 SKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 559 ~~d--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
..+ ....+.+||+.+.+....-..........++. -++..++.||.+ ..+.+||..+.+-...-..+.. .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 221 13468999998876543322111111112222 246677777643 3577899887764433222211 1
Q ss_pred ccEEEEcCCCCEEEEEECC--------------CcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTAD--------------NGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~d--------------g~i~iw~~~~~ 661 (945)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1112222356777777653 24666776654
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.21 E-value=0.19 Score=51.84 Aligned_cols=231 Identities=6% Similarity=-0.028 Sum_probs=111.9
Q ss_pred CCCCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC----C-----CcEEEEeC
Q 002264 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWEL 482 (945)
Q Consensus 416 ~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~----d-----~~i~vwd~ 482 (945)
-++..++.|+.+ ..+.+||..+++-.. ...+......-. ++. .++. +++.|+. + ..+.+||.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~-~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLA-GCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCE-EEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccce-EEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356777777642 358899987754221 111111111111 222 2454 5666664 2 46788883
Q ss_pred CCceEEEecCC---CCCEEEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCE
Q 002264 483 SGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSR 552 (945)
Q Consensus 483 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~ 552 (945)
....-..+... ......+.+ ++.+++.|+.+ ..+.+||..+..-...-..+ ......+.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 33333333211 111112221 44677776644 35778887765432211111 111122222 5666
Q ss_pred EEEEeecCCC-CceEEEEeCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeec
Q 002264 553 LFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 553 l~~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (945)
++.++.+... ...+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 6666643221 356889998876544321111111 1222223 56666777654 5699999988765443222
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
.... .-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1122222 266777777654 34667777654
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.12 E-value=0.22 Score=52.40 Aligned_cols=135 Identities=18% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCeEEEEEccCCCeeEEecCC----CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc------------eeeEe
Q 002264 517 DGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------------IKRTY 580 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~------------~~~~~ 580 (945)
++.||.-++........+..+ -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 467777777644444444443 22577899999999999986 6788888887332 11223
Q ss_pred ccc-----cCcceEEEEEcCC---CCEEEEEECCCcEEEEECCCCe--eEEEee-------cCCCCCCccEEEEcCCCCE
Q 002264 581 AGF-----RKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMDNVN--ILTSTD-------AEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 581 ~~~-----~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~v~~sp~g~~ 643 (945)
.-. ....|..+.|+|- +..|++-..|+.|++||+.... +. .+. .......|.+++|.++|-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 221 1235888999995 4789999999999999998622 22 222 1222246889999998877
Q ss_pred EEEEE--CCCcEEEEE
Q 002264 644 LAVTT--ADNGFKILA 657 (945)
Q Consensus 644 l~~~~--~dg~i~iw~ 657 (945)
|...+ ..|.|+-.-
T Consensus 194 LYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECTTSCEEEEES
T ss_pred EEEEecCCCCCEEEEC
Confidence 77755 667776543
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.12 E-value=0.27 Score=50.35 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=112.1
Q ss_pred EecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC--------------CeEEEEE
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------------GKIKAWL 524 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd 524 (945)
|+.++..+++.....++.|...+.+|.....+... .+.. +++ ++.+|+.+... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~--i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMY--INA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEE--EEE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceee--EEE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34567753443333456666666666555555432 1232 334 44566666543 3566667
Q ss_pred ccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
++..+........ ...++++++.|+....+.++...|+..++...... .+..+.. ..++++++.|+-.+
T Consensus 95 ~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~-----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL-----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC-----CCSEEETTEEEEEC
T ss_pred CCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc-----eEeeEECCEEEEEe
Confidence 6655433322211 23677899998877522335677888888754433 3333221 34577788888776
Q ss_pred C-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC--cEEEEECCCCccccccccCCccccccCcce
Q 002264 605 E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIGLRSLRAVENPPFEALRTPIE 681 (945)
Q Consensus 605 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (945)
. ...|+..++..+.....+. + .. ...++|++.+|+-...++ .|..-++.... ...+.. ..+
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~--~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~-------~~~- 227 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD--C---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE-------ANI- 227 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC--S---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSC-------SCE-
T ss_pred CCCceEEEEECCCCCEEEEeC--C---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC-------CCc-
Confidence 4 6789999988776554433 1 12 234669999988776543 45555554432 122211 112
Q ss_pred eeeeccccccee
Q 002264 682 SVALKVSASSAV 693 (945)
Q Consensus 682 ~v~~s~~g~~l~ 693 (945)
..|+|+|..|+
T Consensus 228 -~~~~~~g~~Iy 238 (302)
T 3s25_A 228 -EHYNVYGSLIF 238 (302)
T ss_dssp -EEEEEETTEEE
T ss_pred -ceEEECCCEEE
Confidence 34788888775
No 335
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.09 E-value=0.0037 Score=48.45 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCCH--HHHHHHHhccCHHHHHHHHcC
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFNM--KYFEEKVQAGDWDEVEKYLSG 59 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~ 59 (945)
++|+.+-|++||..+||.+++.+|.+|.++..+- ..-..-+++-.|..++.+-++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5799999999999999999999999999988751 122344566667666665443
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.98 E-value=0.091 Score=55.18 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccc-----ccc--ccccccccCcccccccccCCCccEEEEEEcC--
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPF--KIWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-- 416 (945)
.|..+..||+|++ ||.-+ +..|.|-.+..+..... ..+ +.|.+.. .-.....+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEecccc
Confidence 6888999999995 66654 67899999875432221 011 1111110 0111467899999999
Q ss_pred -CCCEEEEEECCCcEEEEEccCCccccc-c------eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQ-H------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 417 -~g~~las~~~dg~i~vwd~~~~~~~~~-~------~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
.|..|++-..|+.|++||+........ + ..+......|.+++|..++-.+++++.+..|.|+-.-
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 467899999999999999986332111 0 0111233578889998877765665555666665444
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.96 E-value=1.9 Score=44.75 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC----C
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----G 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~----g 418 (945)
.-...+.|+|.|||+ ++++--..|.|++++..+++......+ ..++.........|+|+|+ +
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 445889999999998 576654489999998655543110000 0122334567899999995 4
Q ss_pred CEEEEEE--CCCcEEEEEccCCc----cc---ccc-eeec-cccccEEEEEEecCCCeeEEEEEe
Q 002264 419 NYVGVAF--TKHLIQLYSYAGSN----DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCG 472 (945)
Q Consensus 419 ~~las~~--~dg~i~vwd~~~~~----~~---~~~-~~~~-~h~~~v~~l~~s~~~~~~~l~s~s 472 (945)
.+.++-+ .+..|.-|.+..+. .+ +.+ ..+. .....-..|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 4434322 34556666665421 11 111 0121 1111345799999997 555543
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.95 E-value=1.2 Score=45.84 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=111.3
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC----C-------
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----K------- 427 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~----d------- 427 (945)
+++.|+ ..+.+||..+++-.. . .+..........+...+++.++.|+. +
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~-----------------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-A-----------------SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-E-----------------ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEec-C-----------------CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566666 578899988765321 0 01111112223333457888888873 1
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--------CcEEEEe-CCCceEEEecCCCCCE-
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWE-LSGRKLFNFEGHEAPV- 497 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--------~~i~vwd-~~~~~~~~~~~~~~~v- 497 (945)
..+.+||..+++-.. ...+......-..+.+ ++. +++.|+.+ ..+.+|| .+++ -..+.....+.
T Consensus 67 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~ 140 (315)
T 4asc_A 67 AYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPYVVY 140 (315)
T ss_dssp EEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSSCCB
T ss_pred cceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCCccc
Confidence 127788887754211 1112111111112222 444 55666632 4588888 4443 22322111111
Q ss_pred -EEEEeeecCCccEEEEEEc-C-----CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCC-CceEE
Q 002264 498 -YSICPHHKENIQFIFSTAI-D-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDG-DSFLV 567 (945)
Q Consensus 498 -~~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~-~~~i~ 567 (945)
.+++. . ++.+++.|+. + ..+.+||..+..-...-..+ ......+. -+++.++.++.+..+ ...+.
T Consensus 141 ~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 141 GHTVLS-H--MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp SCEEEE-E--TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEE
T ss_pred ceeEEE-E--CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEE
Confidence 11121 1 4467777776 2 35788887765322211111 11112222 256677777652211 23688
Q ss_pred EEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCeeEEE
Q 002264 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED--------------SQIKFWDMDNVNILTS 622 (945)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 622 (945)
+||+.+.+....-..........++. -++..++.|+.+ ..+.+||..+.+-...
T Consensus 216 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 216 VYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 89998876544322111111112222 245667777753 2377888887765444
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.76 E-value=0.4 Score=58.35 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=137.6
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
+...+|..+ ++|.-. ..++.|+|+.+...+.... ....|.-=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CC
Confidence 344567776 677654 6899999998877664311 13456666775443 444443 34
Q ss_pred cEEEEEccCCcccccceeeccc----cccEEEEEEecCCCeeEEEEEe------CCCcEEEEeCCCceEEEecCCCCCEE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
.|.-|++.+...... .+..| ...|..-.-+++.+. ++++|= -.|.+.+|....+..+.+.||.+...
T Consensus 126 aVyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (1630)
T ss_pred eEEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhh
Confidence 699999975432221 33334 456777888888885 333332 34788899966666666777766554
Q ss_pred EEEeeecCCc-cEEEEEEc---CCeEEEEEccCC---CeeE-----EecC----CCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 499 SICPHHKENI-QFIFSTAI---DGKIKAWLYDTM---GSRV-----DYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 499 ~~~~~~~~~~-~~l~s~~~---dg~i~iwd~~~~---~~~~-----~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+.....+.. .++..+.. .+.+++-++... ...+ .+.. ......++..++....+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 4433211111 22222222 268888887543 1111 1111 1223456777777777776664
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
-|.++++|+.++.++..-+-... .+...+......-++.....|.|.--.++....+
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 88999999999988765443333 3443333433344555556666665555544433
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.74 E-value=1 Score=46.56 Aligned_cols=197 Identities=9% Similarity=0.032 Sum_probs=91.4
Q ss_pred EcCCCCEEEEEEC----CC-------cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-------C
Q 002264 414 WSPDGNYVGVAFT----KH-------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------K 475 (945)
Q Consensus 414 ~s~~g~~las~~~----dg-------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-------~ 475 (945)
...++..++.|+. ++ .+.+||..+++-.. ...+.........+.+ ++. +++.|+.+ .
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLD 127 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCE--EEEEcCccCCCCcccc
Confidence 3457888888873 12 17778877654221 1112211111122222 454 55666643 2
Q ss_pred cEEEEe-CCCceEEEecCCCCCEE--EEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCC--CeEEEE
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVY--SICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG--HWCTTM 544 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~~ 544 (945)
.+.+|| .+++ -..+.....+.. +++. . ++.+++.|+.+ ..+.+||+.+..-...-..+. .....+
T Consensus 128 ~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 203 (318)
T 2woz_A 128 SVLCYDPVAAK-WSEVKNLPIKVYGHNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA 203 (318)
T ss_dssp EEEEEETTTTE-EEEECCCSSCEESCEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred eEEEEeCCCCC-EeECCCCCCcccccEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence 477788 4443 223222111111 1111 1 45677777642 358888887654332211111 111222
Q ss_pred EEcCCCCEEEEEeecCCC-CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC--------------CcE
Q 002264 545 LYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED--------------SQI 609 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i 609 (945)
. -+++.++.++.+.++ ...+.+||+.+.+....-.......-..++. .++..++.|+.+ ..+
T Consensus 204 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 204 I--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp E--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred E--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeE
Confidence 2 256666676653211 2457789988765443221111101111222 245666666643 347
Q ss_pred EEEECCCCeeEEE
Q 002264 610 KFWDMDNVNILTS 622 (945)
Q Consensus 610 ~iwd~~~~~~~~~ 622 (945)
.+||..+.+-...
T Consensus 281 ~~yd~~~~~W~~~ 293 (318)
T 2woz_A 281 WKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCEehhh
Confidence 7777777655443
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.65 E-value=1.1 Score=46.05 Aligned_cols=193 Identities=8% Similarity=-0.004 Sum_probs=93.3
Q ss_pred CCCEEEEEEC----C-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-
Q 002264 417 DGNYVGVAFT----K-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE- 481 (945)
Q Consensus 417 ~g~~las~~~----d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd- 481 (945)
++++++.|+. + ..+.+||..+.+-.. ...+.........+.+ +++ +++.|+.+ ..+.+||
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGVI--DGH--IYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEEE--TTE--EEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCcCccccEEEEE--CCE--EEEEcCCCCCcccccEEEECC
Confidence 6677777765 2 358889987754221 1112211122222222 555 56666543 3578888
Q ss_pred CCCceEEEecCCCCCE--EEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEec--CCCCeEEEEEEcCCCCE
Q 002264 482 LSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR 552 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~ 552 (945)
.+++ -..+.....+. .+++. . ++.+++.|+.+ ..+.+||+.+..-...-. ........+.+ +++.
T Consensus 145 ~~~~-W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 218 (308)
T 1zgk_A 145 ERDE-WHLVAPMLTRRIGVGVAV-L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCI 218 (308)
T ss_dssp TTTE-EEECCCCSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCe-EeECCCCCccccceEEEE-E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEE
Confidence 4443 22322111111 11221 1 44677777765 357888876653322111 11111222222 5666
Q ss_pred EEEEeecCC-CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEE
Q 002264 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILT 621 (945)
Q Consensus 553 l~~~~~~~d-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 621 (945)
++.++.+.. ....+.+||+.+.+....-..........++. -++..++.|+.+ ..+.+||..+.+-..
T Consensus 219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 666654211 13568999998876443221111111112222 245666777643 357888888766443
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.61 E-value=0.32 Score=51.44 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=63.8
Q ss_pred CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCC--CceEEEEeC--CCCceeeE--eccccCcceE
Q 002264 518 GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNE--SEGTIKRT--YAGFRKKSNG 589 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~--~~~~~~~~--~~~~~~~~~~ 589 (945)
..+.+||..+..-...-..+ ...-.+++. -+++.++.++.+..+ ...+..||+ .+.+.... +..... ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-ccc
Confidence 46888888765433322221 111022222 255666666542211 345777876 44433221 111111 111
Q ss_pred EEEEcCCCCEEEEEECC----------------------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 590 VVQFDTTQNHFLAVGED----------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
..+...++..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11222345666666632 2578899887654433222221 22223333477888888
Q ss_pred ECCC------cEEEEECCCCc
Q 002264 648 TADN------GFKILANAIGL 662 (945)
Q Consensus 648 ~~dg------~i~iw~~~~~~ 662 (945)
+.++ .|.++++++++
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCS
T ss_pred eeCCCCCEeeeEEEEEEcCcE
Confidence 8653 35556776663
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.36 E-value=2.5 Score=46.02 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=143.3
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCccccccc------ccccccccCcccccccccCCCccEE--EEEEc---CCCCEEEE
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIFKDVPISVS--RVAWS---PDGNYVGV 423 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~V~--~i~~s---~~g~~las 423 (945)
|.-|.+.||+..|.|+|+-+.+++.+..-++ .-|-....+......--.-..+... .+++. .||+||..
T Consensus 68 Deyy~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfi 147 (638)
T 3sbq_A 68 DDYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFI 147 (638)
T ss_dssp CSEEEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEE
T ss_pred ccEEEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEE
Confidence 3346788999999999999999988754221 2222221111111000000111222 23332 26888888
Q ss_pred EEC-CCcEEEEEccCCcccccceeeccccccEEEEEEe--cCCCeeEEEEEeC-------CCcE---------EEEe---
Q 002264 424 AFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGD-------DKLI---------KVWE--- 481 (945)
Q Consensus 424 ~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~~~l~s~s~-------d~~i---------~vwd--- 481 (945)
-.. +..|-..+++.-++-+.+ .+ .....+..++|- |+.. +++.+++ ||.. .+|.
T Consensus 148 Ndkan~RvAri~l~~~~~d~Ii-~i-Pn~~~~Hg~~~~~~p~T~--yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 148 NDKANSRVARIRLDIMKCDKMI-TV-PNVQAIHGLRLQKVPHTK--YVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EETTTTEEEEEETTTTEEEEEE-EC-TTCSCEEEEEECCSSBCC--EEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred ecCCCcceEEEECCcEeeceeE-eC-CCCcCcccccccccCCcc--EEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 764 556777777765543321 22 244567778876 5666 5665553 2221 1111
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---------------eEEEEEc--------------------
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---------------KIKAWLY-------------------- 525 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------------~i~iwd~-------------------- 525 (945)
.+.+....+.- .+..-.+.. +.++.+.++.+.+. .+.++++
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~--~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDA--DYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred CCccEEEEEEEc-CCChhhcCC--CCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 11111111100 001111111 22345555554321 2334433
Q ss_pred -----cC----CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC------ce-------eeEeccc
Q 002264 526 -----DT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TI-------KRTYAGF 583 (945)
Q Consensus 526 -----~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~------~~-------~~~~~~~ 583 (945)
+. ......+.........+.++|||+++++++. .+.++.++|.+.. +. .....
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK---LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK---LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT---TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC---CCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 22 1111111111123456789999999999874 5788999998742 11 11111
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC----------eeEEEeecCCCCCCccEEE------EcCCCCEEEEE
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----------NILTSTDAEGGLPNLPRLR------FSKEGNLLAVT 647 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~v~------~sp~g~~l~~~ 647 (945)
-+......+|+++|+...+.--|..|.-|++... ..+..+..+-. +-.+. -.|||++|++.
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEE
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEe
Confidence 1223455889999944444458999999998753 35555655432 22222 25789999987
Q ss_pred EC
Q 002264 648 TA 649 (945)
Q Consensus 648 ~~ 649 (945)
..
T Consensus 453 nK 454 (638)
T 3sbq_A 453 SK 454 (638)
T ss_dssp ES
T ss_pred cc
Confidence 54
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.64 E-value=0.83 Score=43.25 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred eeEEeecCCCceEEecCCCeEEEEeccCceE-------EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce
Q 002264 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (945)
Q Consensus 834 i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~-------~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~ 906 (945)
..++.|.++|.+.++ +||.|.=++-.+... ...-.+--..+..|.|.| +|.+-|+. |+.++-+...++.
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 478999999999888 789887776533111 011111124589999999 88777666 7776544433221
Q ss_pred ------EEEEe-cCCCcceeEEEecCCcceeeeecCCceE
Q 002264 907 ------VKSKL-KGHQKRITGLAFSTSLNILVSSGADAQV 939 (945)
Q Consensus 907 ------~~~~l-~~h~~~V~~l~~s~dg~~l~s~~~Dg~i 939 (945)
....+ .......+.+.|+++|...+.. ++.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 11111 2334455668899999877765 6643
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.54 E-value=6.5 Score=42.68 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc--CCCccEEEEEEcCC---C
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPD---G 418 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~i~~s~~---g 418 (945)
-...+.|+|.|+|+ ++++-...+.|++++..+++... +. .+ . ..+. ........|+|+|+ +
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~---~~--~~-------~-~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKT---VF--QV-------P-EIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE---EE--EC-------T-TCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeE---Ee--cC-------C-ccccccCCCCceeEEEECCCcCcC
Confidence 44789999999998 56664333468888765544321 00 00 0 0111 13467889999995 5
Q ss_pred CEEEEEE-C------------CCcEEEEEccCCc-cc---ccce-eec-cccccEEEEEEecCCCeeEEEEE
Q 002264 419 NYVGVAF-T------------KHLIQLYSYAGSN-DL---RQHS-QID-AHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 419 ~~las~~-~------------dg~i~vwd~~~~~-~~---~~~~-~~~-~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
.+|..+. . ...|.-|+...+. .+ +.+. .+. ........|+|.|||.. ++.+|
T Consensus 92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L-yv~~G 162 (454)
T 1cru_A 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI-YYTIG 162 (454)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE-EEEEC
T ss_pred CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE-EEEEC
Confidence 5444433 2 1346666654321 11 1111 111 11224789999999982 44444
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.24 E-value=3.3 Score=45.04 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=22.2
Q ss_pred CccEEEEcCCCC-EEEEEECCCcEEEEECC
Q 002264 631 NLPRLRFSKEGN-LLAVTTADNGFKILANA 659 (945)
Q Consensus 631 ~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~ 659 (945)
.-..++|.|||. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 347899999996 45556778999999754
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.23 E-value=1.5 Score=46.01 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=29.8
Q ss_pred eEEEEeCCCCceeeE--eccccCcceEEEEEcCCCCEEEEEECCC------cEEEEECCCCeeEEEeecCC
Q 002264 565 FLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS------QIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~ 627 (945)
.+.+||+.+.+.... +..... ... ++..++..++.||.++ .|.++++++++.+.....+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~-~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRA-YGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCB-SSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred eEEEEecCCCceeeCCCCCCCcc-cce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 577899887654332 222211 112 2334567788888542 36667888887776655443
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.88 Score=46.94 Aligned_cols=191 Identities=7% Similarity=-0.047 Sum_probs=96.9
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEE--ecCCCeeEEEEE-eCCCcEEEEe-CCCceEEEecC-
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAF--AYPNKLLCVVTC-GDDKLIKVWE-LSGRKLFNFEG- 492 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~--s~~~~~~~l~s~-s~d~~i~vwd-~~~~~~~~~~~- 492 (945)
..++.++.||.|.-+|.++|+..-. +... ..++....- .+.+.. .++.. +.||.+..++ .+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 4677888999999999888875542 2111 112211100 011222 33333 5799999999 77754433321
Q ss_pred ---CCCCEEEEEeeecC-------CccEEEEEEcCCeEEEEEccCCCeeEEecCCCC--e-----EEEEEEc-----CCC
Q 002264 493 ---HEAPVYSICPHHKE-------NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--W-----CTTMLYS-----ADG 550 (945)
Q Consensus 493 ---~~~~v~~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~-----i~~~~~s-----~~~ 550 (945)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+..... . ..|.... ..+
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 1222221 000000 335789999999999999999999988765421 0 1111111 113
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEec--cccCcceE-----EEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYA--GFRKKSNG-----VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
..++.+.. +..+.+.+ ++|+ +-.+. ......+. ....+.++.+ ++++.||.|+.+|..+|..+.
T Consensus 166 ~~v~ig~~----~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKT----IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEE----EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecc----eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 44555443 44444444 3332 11110 00000000 0001123444 557889999999988888765
No 349
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.69 E-value=0.23 Score=46.97 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=64.7
Q ss_pred ceeEEeecCCCceEEecCCCeEEEEeccCceE------EEEec--CCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~------~~~~~--~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
.+..++|+|+|.+.|+ ++|++.-.+..+... -..+- +.. .-.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5779999999998888 878776666544111 11110 111 147899999 8877776 579998887643
Q ss_pred ceE-------EEEecCCCcceeEEEecCCcceeeeecCCceE
Q 002264 905 DEV-------KSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939 (945)
Q Consensus 905 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i 939 (945)
... ...-.+--..+..|.|.|+|.+.+.. |+.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 210 11112122568999999999887766 7764
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.65 E-value=6.9 Score=39.70 Aligned_cols=204 Identities=9% Similarity=0.110 Sum_probs=112.6
Q ss_pred EEEcCCCCEEEEEECC--------------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--
Q 002264 412 VAWSPDGNYVGVAFTK--------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (945)
Q Consensus 412 i~~s~~g~~las~~~d--------------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-- 475 (945)
--++++|++|.-+... ..|+..++++++... +... . +..|+++++.++++..+.++
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD--P--CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS--C--EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC--C--ccEEEEeCCEEEEEeecCCCCc
Confidence 3457889988877543 357777777664322 2211 1 23678899853333322344
Q ss_pred cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 476 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.|..-+..|.....+..+.. ..+++. ++.|+-.+. ...|..-+++.......+. .. .. ..+.|++.+|+
T Consensus 130 ~Iy~~~~dGs~~~~lt~~~~----~~~~~~--g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~-~~-~~~~P~g~~iy 199 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNHYL----FTCNTS--DRYFYYNNPKNGQLYRYDTASQSEALFYD--CN-CY-KPVVLDDTNVY 199 (302)
T ss_dssp EEEEEETTSCCCEEEESSCC----CCSEEE--TTEEEEECTTTCCEEEEETTTTEEEEEEC--SC-EE-EEEEEETTEEE
T ss_pred eEEEEECCCCCeEEEeCCCc----eEeeEE--CCEEEEEeCCCceEEEEECCCCCEEEEeC--CC-cc-ceeeecCCEEE
Confidence 44444567766666665543 345554 355665554 5677777776554443332 21 22 23569999988
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
..... ....|..-++..... ..+... .+ ..++|++.+|+.+. ..+.|..-+++.......... .+
T Consensus 200 ~t~~~--~~~~I~~~~ldG~~~-~~Lt~~---~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-----~~ 266 (302)
T 3s25_A 200 YMDVN--RDNAIVHVNINNPNP-VVLTEA---NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-----EF 266 (302)
T ss_dssp EEEGG--GTTEEEEECSSSCCC-EECSCS---CE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----CE
T ss_pred EEEcC--CCcEEEEEECCCCCe-EEEeCC---Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----cc
Confidence 76542 125677777765543 333221 22 34788888888764 345677777765443333221 12
Q ss_pred cEEEEcCCCCEEEEEE
Q 002264 633 PRLRFSKEGNLLAVTT 648 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~ 648 (945)
. .+++.+.+|+-..
T Consensus 267 ~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 267 C--NINVTSQYVYFTD 280 (302)
T ss_dssp E--EEEECSSEEEEEE
T ss_pred c--eEEEeCCEEEEEE
Confidence 2 3444566666554
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.15 Score=52.61 Aligned_cols=190 Identities=10% Similarity=0.065 Sum_probs=102.2
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCC-CCCEEEEEeeec-CCccEEEEE-EcCCeEEEEEccCCCeeEEecCC----C
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHK-ENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAP----G 538 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 538 (945)
.++.++.||.|.-.| .+|+.+.++... ..++....-... .++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 678889999999999 899998888654 122222210011 122333333 58999999988776544433221 1
Q ss_pred CeEEE---EEE-----cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc------eEEEEEc-----CCCCE
Q 002264 539 HWCTT---MLY-----SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFD-----TTQNH 599 (945)
Q Consensus 539 ~~i~~---~~~-----s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~ 599 (945)
.++.. ..+ +..+..+++++. ++.+.-.|+.+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11211 000 013456677775 8899999999999998887532111 0011110 12356
Q ss_pred EEEEECCCcEEEEECCCCeeEEEee-----cCCCCCCc-cEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002264 600 FLAVGEDSQIKFWDMDNVNILTSTD-----AEGGLPNL-PRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v-~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
++.+..+..+.+.+ ++|+ +..+. .......+ ..-..+.|+.+ +.++.||.|.-+|..++..
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 77777666666655 3343 21111 00000000 00011234666 4578899999999888743
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.34 E-value=2.3 Score=49.43 Aligned_cols=199 Identities=6% Similarity=-0.016 Sum_probs=99.4
Q ss_pred CCCCEEEEEECC----CcEEEEEccCCccccccee-----eccccccEEEEEEec-CCCeeEEEEEeCC------CcEEE
Q 002264 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQ-----IDAHVGAVNDLAFAY-PNKLLCVVTCGDD------KLIKV 479 (945)
Q Consensus 416 ~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~-----~~~h~~~v~~l~~s~-~~~~~~l~s~s~d------~~i~v 479 (945)
.++..++.||.+ ..+.+||..+++-...... +......- +++..+ ++. +++.||.+ ..+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 467777777753 3588899887643221101 11111112 233333 565 66666643 35778
Q ss_pred Ee-CCCceEEEecCCCCCE--EEEEeeecCCccEEEEEEcCC--eEEEEEccCCCeeEEe-----cCCCCeEEEEEEcCC
Q 002264 480 WE-LSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDY-----DAPGHWCTTMLYSAD 549 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~~ 549 (945)
|| .+++ -..+.....+. .+++. -.++.+++.||.++ .+.+||..+..-...- ........++.+..+
T Consensus 473 yd~~t~~-W~~~~~~p~~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTRE-WSMIKSLSHTRFRHSACS--LPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EETTTTE-EEECCCCSBCCBSCEEEE--CTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EeCCCCc-EEECCCCCCCcccceEEE--EcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 88 4432 22222111111 11121 11557888887655 6888888765422211 111112233555555
Q ss_pred -CCEEEEEeecCCC---CceEEEEeCCCCc------eeeEecc-ccCcceEEEEEcCCCCEEEEEEC--------CCcEE
Q 002264 550 -GSRLFSCGTSKDG---DSFLVEWNESEGT------IKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE--------DSQIK 610 (945)
Q Consensus 550 -~~~l~~~~~~~d~---~~~i~iwd~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~ 610 (945)
++.++.+|...++ ...+.+||+.+.. ....... .....-..++...++..++.||. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666666643222 3568999998876 2222111 11111122333333667777763 34699
Q ss_pred EEECCCCeeE
Q 002264 611 FWDMDNVNIL 620 (945)
Q Consensus 611 iwd~~~~~~~ 620 (945)
+||..+..-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
No 353
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.80 E-value=21 Score=38.67 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE--EecC------CCCeEEEEEEcCC---CCEEEEEeecC---
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDA------PGHWCTTMLYSAD---GSRLFSCGTSK--- 560 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~i~~~~~s~~---~~~l~~~~~~~--- 560 (945)
.....++|.+ +|+++++-...+.|++++...+.... .+.. .......|+|+|+ +..|+++....
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456888866 55655554333478888754443322 1211 1345779999996 56665554310
Q ss_pred --CC----CceEEEEeCCCC--c-----ee-eEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 561 --DG----DSFLVEWNESEG--T-----IK-RTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 561 --d~----~~~i~iwd~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
+. ...|..++.... . .+ ..+..........++|.|+|.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 00 235666655321 1 11 1122211224677999999987777553
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.63 E-value=34 Score=39.38 Aligned_cols=251 Identities=8% Similarity=0.041 Sum_probs=122.5
Q ss_pred EEEEE-EeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 347 VISMD-FHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 347 V~~v~-fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
...+. ++|+|++++++=|..| .|+++|+.+++.+.. .+. ...+... + -......++|-.++..+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~-------~--~~~~~~~~~W~d~~~~~ 199 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK-------L--LEGKFTYPTWINKDTII 199 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC-------B--CCEETCCEEEEETTEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc-------c--cccccceeeEECCCEEE
Confidence 34444 8999997666544433 799999999887642 111 0000000 0 00012334776333333
Q ss_pred EEE----------ECCCcEEEEEccCCcccccceeecccccc-EEEEEEecCCCe---eEEEEEeCC---CcEEEEeCC-
Q 002264 422 GVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKL---LCVVTCGDD---KLIKVWELS- 483 (945)
Q Consensus 422 as~----------~~dg~i~vwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~---~~l~s~s~d---~~i~vwd~~- 483 (945)
++. +....|+.|.+-+...-. ...+.+.... -.....++++.. ..+++.+.+ ..+.+.+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 321 112458888775542111 1123333332 234555667663 135554423 344555533
Q ss_pred --CceEEEecCCCCCEEEEEeeecCCccEEEEE----------EcCCeEEEEEccCCC-------eeEE-ec-CCCCeEE
Q 002264 484 --GRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKIKAWLYDTMG-------SRVD-YD-APGHWCT 542 (945)
Q Consensus 484 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~~-~~~~~i~ 542 (945)
++ +..+....... +..+. ++.+++.. ...+.|...|+.... .... +. .....+.
T Consensus 279 ~~~~-~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLK-LQKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCE-EEECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCc-ceEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 33 33333222211 11222 33444432 246778889887632 1222 22 2344678
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeE-eccccCcceEEEEEcCCCCEE-EEEE---CCCcEEEEECCC
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHF-LAVG---EDSQIKFWDMDN 616 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~ 616 (945)
.+.+..+ ..+++... ++...+.++|+.++. .... +.......+.....++++..+ ++.+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~- 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT- 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-
Confidence 8888876 34444432 345578888887664 2233 322212245556666766544 4433 34678888876
Q ss_pred Ce
Q 002264 617 VN 618 (945)
Q Consensus 617 ~~ 618 (945)
++
T Consensus 430 ~~ 431 (711)
T 4hvt_A 430 HE 431 (711)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.84 E-value=29 Score=37.53 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeec---------cccccEEEEEEecC
Q 002264 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYP 462 (945)
Q Consensus 408 ~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~ 462 (945)
....|+|.|||. .|+++...|.|++++.+.......+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 467899999996 45556788999999754321111111111 12457889999996
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.48 E-value=21 Score=35.57 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=110.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~ 485 (945)
.|..|+....- .++. . ||.|..|-......+.. -......|..++..... .++. . ||.|..|- ..++
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G~~h---s~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAGNYH---SLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEECSSE---EEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeCCCE---EEEE-E-CCEEEEeeCCCCCC
Confidence 56677665432 2333 4 89999997654333321 11123357777765433 2333 4 89999998 3343
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.-.. ..-...|..++... ...+.-. ||.|..|-.......-........|..++...+.. +... ++.
T Consensus 94 lg~P-~~~~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~--~~l~-----~G~ 160 (282)
T 3qhy_B 94 TTVP-AEARSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA--LAVK-----NGG 160 (282)
T ss_dssp TCCC-GGGSSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--EEEE-----TTE
T ss_pred CCCC-cccCCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--EEEE-----CCE
Confidence 2111 11134677776532 2344445 99999996554322211111223466665443322 2221 567
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
++.|-......+. .+......+..++.... +.++- .||.|+.|-....-.+. +... ....|..++...+. .++
T Consensus 161 v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 161 VIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT-VPTE-ALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp EEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC-CCGG-GGSSCCEEEECSSC-EEE
T ss_pred EEEecCCCCCCCC-CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCC-CCcc-cCCCceEEEcCCCE-EEE
Confidence 8888654321111 11111124555555433 33344 69999999765432111 1111 11256777765443 333
Q ss_pred EEECCCcEEEEECCC
Q 002264 646 VTTADNGFKILANAI 660 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~ 660 (945)
.. ||.|..|-...
T Consensus 234 l~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 234 LK--NGKVIAWGSSR 246 (282)
T ss_dssp EE--TTEEEEESTTC
T ss_pred EE--CCEEEEecCCC
Confidence 33 88999996543
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.52 E-value=25 Score=35.14 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=110.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|..++.... +.++. . ||.|..|-.....++-. +. .....|..|+...+-. ++. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~------~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------PA------ATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------CG------GGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------Cc------cCCCCEEEEEeCCCEE-EEE-E
Confidence 4555554433 23444 4 89999997655433310 00 0112566676654333 333 4
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
||.|..|-......+.... .-...|..++...+. .+.-. ||.|..|- ..++.-.. ......|..++..
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGG 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEEC
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcc
Confidence 8999999765433222111 113468888776543 23334 89999998 33433111 1123457776642
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
. ...+ .-. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+-. ...
T Consensus 150 ~---~~~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~ 216 (282)
T 3qhy_B 150 V---YTAL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE 216 (282)
T ss_dssp S---SEEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG
T ss_pred c---CEEE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc
Confidence 2 1233 334 79999996554322211111123566666544333222 2 77888887543211110 101
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
....+..++.... +.++-. ||.|+.|-....
T Consensus 217 ~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 217 ALSGVSAIASGEW--YSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GGSSCCEEEECSS--CEEEEE-TTEEEEESTTCC
T ss_pred cCCCceEEEcCCC--EEEEEE-CCEEEEecCCCC
Confidence 1113555555443 333334 999999976553
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.18 E-value=48 Score=38.14 Aligned_cols=244 Identities=8% Similarity=0.006 Sum_probs=120.6
Q ss_pred cEEEEE-EcCCCCEEEEE-ECC----CcEEEEEccCCcccccceeec-cccc------cEEEEEEecCCCeeEEEEEe--
Q 002264 408 SVSRVA-WSPDGNYVGVA-FTK----HLIQLYSYAGSNDLRQHSQID-AHVG------AVNDLAFAYPNKLLCVVTCG-- 472 (945)
Q Consensus 408 ~V~~i~-~s~~g~~las~-~~d----g~i~vwd~~~~~~~~~~~~~~-~h~~------~v~~l~~s~~~~~~~l~s~s-- 472 (945)
....+. ++|++++++.+ +.. ..++++|+.+++.+..- +. .-+. ....++|..++. ++++..
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~ 205 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLH 205 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCS
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCC
Confidence 344455 88999988765 222 35999999998765421 11 0000 123458874443 444321
Q ss_pred --------CCCcEEEEe-CCC--ceEEEecCCCCCE-EEEEeeecCCcc---EEEEEEcC---CeEEEEEccCCC-eeEE
Q 002264 473 --------DDKLIKVWE-LSG--RKLFNFEGHEAPV-YSICPHHKENIQ---FIFSTAID---GKIKAWLYDTMG-SRVD 533 (945)
Q Consensus 473 --------~d~~i~vwd-~~~--~~~~~~~~~~~~v-~~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~-~~~~ 533 (945)
....|+.|. -+. +-...+.+....+ .+.....++... .+++.+.+ ..+.+.+.+... ....
T Consensus 206 ~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (711)
T 4hvt_A 206 KNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK 285 (711)
T ss_dssp TTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE
T ss_pred CCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE
Confidence 124577776 222 2233444433333 222333332221 34444422 334555554322 2233
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCCc-------eee-EeccccCcceEEEEEcCCCCE
Q 002264 534 YDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGT-------IKR-TYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 534 ~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~ 599 (945)
+..+.... +..+.++..++....+ .-..+.|...|+.++. ..+ .+.......+..+.+..+ ..
T Consensus 286 l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 286 INMPSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp CCSCTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred eecCCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 43333311 2334455555533211 0026678888887642 122 243333435677788765 56
Q ss_pred EEEEECCCc--EEEEECCCCe-eEEE-eecCCCCCCccEEEEcCCCC-EEEEEEC---CCcEEEEECC
Q 002264 600 FLAVGEDSQ--IKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGN-LLAVTTA---DNGFKILANA 659 (945)
Q Consensus 600 l~~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~sp~g~-~l~~~~~---dg~i~iw~~~ 659 (945)
+++...++. |+++++.++. .... +.... ...+..+..++++. ++++.+. -+.+..+++.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666666664 6777776664 2233 33332 12455666667665 4444443 3567777765
No 359
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.92 E-value=9.6 Score=44.11 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=62.8
Q ss_pred CCCEEEEEeecCCC--CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC--cEEEEECCCCeeEEEee
Q 002264 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (945)
Q Consensus 549 ~~~~l~~~~~~~d~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 624 (945)
+++.++.+|.+... -..+.+||..+.+....-.......-.+++.-.++..++.||.++ .+.+||..+..-...-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 67777777753322 246889999886544322111111122233324778888887544 79999998876543321
Q ss_pred ---cCCCCCCccEEEEcCC-CCEEEEEEC--C-----CcEEEEECCCC
Q 002264 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (945)
Q Consensus 625 ---~~~~~~~v~~v~~sp~-g~~l~~~~~--d-----g~i~iw~~~~~ 661 (945)
.+.......++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111112233555655 667777765 2 34777777665
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.32 E-value=48 Score=34.82 Aligned_cols=236 Identities=8% Similarity=0.003 Sum_probs=109.3
Q ss_pred CccEEEEEEcC--CCCEEEEEECCC----cEEEEEccCCccccccee---ecc--------ccccEEEEEEecC--CCee
Q 002264 406 PISVSRVAWSP--DGNYVGVAFTKH----LIQLYSYAGSNDLRQHSQ---IDA--------HVGAVNDLAFAYP--NKLL 466 (945)
Q Consensus 406 ~~~V~~i~~s~--~g~~las~~~dg----~i~vwd~~~~~~~~~~~~---~~~--------h~~~v~~l~~s~~--~~~~ 466 (945)
...|.+|++.| .+.+.+.+ ..| .|.. ..+.|+....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35799999999 45555444 444 3333 2244443332111 111 1135888999873 34
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecC-------------------CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEG-------------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+..++..+.|...+..|+.-..+.. ....+.+|.+.|...+ .++.+..++.|... ..
T Consensus 130 ~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 130 TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 34445445655555444443333321 1235778888764333 34445444444332 22
Q ss_pred CCeeEE-ecC--C-----------CCeEEEEEEcCC-CCEEEEEeecCCCCceEEEEeCCCCceeeEecc-ccC---cce
Q 002264 528 MGSRVD-YDA--P-----------GHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRK---KSN 588 (945)
Q Consensus 528 ~~~~~~-~~~--~-----------~~~i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~-~~~---~~~ 588 (945)
+..... +.. . ...+.++.+.|+ ...++++. .+.|+..+-. ++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDRR-EGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEETT-TTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCCC-CCcceECCCCCCCCCccce
Confidence 222221 111 0 134889999886 35565554 3345544422 222222211 111 134
Q ss_pred EEEEEcCC-CCEEEEEEC-----------CCcEEEEECCC-CeeEEEeec--CCCC--C--CccEEEEcCC-CCEEEEEE
Q 002264 589 GVVQFDTT-QNHFLAVGE-----------DSQIKFWDMDN-VNILTSTDA--EGGL--P--NLPRLRFSKE-GNLLAVTT 648 (945)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~v~~sp~-g~~l~~~~ 648 (945)
..+.++|. ...++++.. ++...+|...+ |+.-..+.. .... . ....++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 56777763 345555542 33345555443 343333321 1100 0 1236888874 34566666
Q ss_pred CCCcEE
Q 002264 649 ADNGFK 654 (945)
Q Consensus 649 ~dg~i~ 654 (945)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.27 E-value=62 Score=33.99 Aligned_cols=223 Identities=7% Similarity=-0.029 Sum_probs=100.5
Q ss_pred ccEEEEEEcC-C-CCEEEEEECCCcEEEEEccCCcccccceeec----------------cccccEEEEEEecCCCeeEE
Q 002264 407 ISVSRVAWSP-D-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID----------------AHVGAVNDLAFAYPNKLLCV 468 (945)
Q Consensus 407 ~~V~~i~~s~-~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~----------------~h~~~v~~l~~s~~~~~~~l 468 (945)
..|.++++.| + ...|..++..+.|...+ +.|+.......+. .....|.+|.+.|.... .+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l 192 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HL 192 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EE
Confidence 3688999987 2 45555555555444332 3344333221110 01235889999884321 23
Q ss_pred EEEeCCCcEEEEeCCCceEEEecCC-------------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-Ee
Q 002264 469 VTCGDDKLIKVWELSGRKLFNFEGH-------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DY 534 (945)
Q Consensus 469 ~s~s~d~~i~vwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~ 534 (945)
+.+..++.|...+..|+.-..+... ...+.++.+.+... ..++.+...+ |... ....... .+
T Consensus 193 ~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~-~~l~vg~~~g-l~~s--~D~G~tW~~~ 268 (394)
T 3b7f_A 193 YIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAP-DILYQQNHCG-IYRM--DRREGVWKRI 268 (394)
T ss_dssp EEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSST-TEEEEEETTE-EEEE--ETTTTEEECG
T ss_pred EEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCC-CEEEEEcCCe-EEEe--CCCCCcceEC
Confidence 3343344444444344433332210 12478888877532 4566666544 3333 2222222 11
Q ss_pred c--CCC---CeEEEEEEcC-CCCEEEEEeecCC-------CCceEEEEeCCC-CceeeEec-cccCc------ceEEEEE
Q 002264 535 D--APG---HWCTTMLYSA-DGSRLFSCGTSKD-------GDSFLVEWNESE-GTIKRTYA-GFRKK------SNGVVQF 593 (945)
Q Consensus 535 ~--~~~---~~i~~~~~s~-~~~~l~~~~~~~d-------~~~~i~iwd~~~-~~~~~~~~-~~~~~------~~~~~~~ 593 (945)
. ... ..+..+.++| +...+++++.+.+ .++...+|...+ ++.-..+. +.... ....+++
T Consensus 269 ~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~ 348 (394)
T 3b7f_A 269 GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTA 348 (394)
T ss_dssp GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEE
T ss_pred CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEE
Confidence 1 122 3456788876 3344554432111 022233444333 22222221 11110 1134777
Q ss_pred cCC-CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 594 DTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 594 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
+|. ...|++++.++.|+.- .+.++.-..+... ...+.+++|.
T Consensus 349 ~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~--lp~~~~v~~~ 391 (394)
T 3b7f_A 349 DAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASH--LPHIYAVQSA 391 (394)
T ss_dssp CCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECS--CSCEEEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccC--CCCeeEEEEe
Confidence 774 3557777666665532 2334444444322 2256666653
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.79 E-value=95 Score=37.19 Aligned_cols=37 Identities=8% Similarity=0.241 Sum_probs=32.2
Q ss_pred CeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe
Q 002264 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
.+.+++..+ +..++++-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 367777877 7789999999999999999999988764
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.78 E-value=1.1e+02 Score=31.82 Aligned_cols=164 Identities=11% Similarity=0.094 Sum_probs=82.7
Q ss_pred EEEEe-CCC--ceEEEecC------CCCCEEEEEee-ecC----CccEEEEE-EcCCeEEEEEccCCCeeEEec----C-
Q 002264 477 IKVWE-LSG--RKLFNFEG------HEAPVYSICPH-HKE----NIQFIFST-AIDGKIKAWLYDTMGSRVDYD----A- 536 (945)
Q Consensus 477 i~vwd-~~~--~~~~~~~~------~~~~v~~~~~~-~~~----~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~----~- 536 (945)
|.+|| .++ +.++++.- ....+..+.+. ..+ ++.+++.+ +..+.|.++|+.+++...... .
T Consensus 125 Lv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd 204 (381)
T 3q6k_A 125 IVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE 204 (381)
T ss_dssp EEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC
T ss_pred EEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc
Confidence 44566 555 55555432 23457788876 211 12343333 356789999988765544321 0
Q ss_pred -------C------CCeEEEEEEcCC----CCEEEEEeecCCCCceEEEEeCC-----CCceee--EeccccC--cceEE
Q 002264 537 -------P------GHWCTTMLYSAD----GSRLFSCGTSKDGDSFLVEWNES-----EGTIKR--TYAGFRK--KSNGV 590 (945)
Q Consensus 537 -------~------~~~i~~~~~s~~----~~~l~~~~~~~d~~~~i~iwd~~-----~~~~~~--~~~~~~~--~~~~~ 590 (945)
. ...+..++++|+ ++.|+..... . -++|.+. ...... ...+... ..-..
T Consensus 205 ~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls---s--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 205 RPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS---A--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp SCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS---C--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred cCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC---C--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 0 125778899998 7777766531 1 2333332 111111 1112221 12334
Q ss_pred EEEc-CCCCEEEEEECCCcEEEEECCC-C---eeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 591 VQFD-TTQNHFLAVGEDSQIKFWDMDN-V---NILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 591 ~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
.+++ .+|..+++--+.+.|..|+..+ . .....+...........+.+.++|.+.+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 5665 5565555556888999999875 1 1222222222223445566555554333
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=66.75 E-value=1.3e+02 Score=31.47 Aligned_cols=298 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred cEEEEEEcCCeEEEEEccC------------CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--
Q 002264 509 QFIFSTAIDGKIKAWLYDT------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-- 574 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-- 574 (945)
..++.-..||+|..|=... ..+..........+..++.......++.. ++.|+.|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~------~G~v~~wG~n~~Gq 84 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA------DGKLYATGYGAGGR 84 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEET------TSCEEEEECCGGGT
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcC------CCcEEEEECCCCCC
Q ss_pred ---------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--------CeeEEEeecCCCCCCccEEEE
Q 002264 575 ---------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--------VNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 575 ---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~v~~ 637 (945)
.....+.......+..++++....+.++...||.|+.|-... .........-.....+.-+.+
T Consensus 85 LG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~v 164 (389)
T 3kci_A 85 LGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDV 164 (389)
T ss_dssp TSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEE
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+......+....+|.|+.|-....
T Consensus 165 a~G~~hs~alt~~G~v~~wG~n~~-------------------------------------------------------- 188 (389)
T 3kci_A 165 AAGGAHSACVTAAGDLYTWGKGRY-------------------------------------------------------- 188 (389)
T ss_dssp EECSSEEEEEETTSCEEEEECCGG--------------------------------------------------------
T ss_pred EeCcCeEEEEeCCCeEEEeCCCCC--------------------------------------------------------
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCC
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~ 797 (945)
|.+-.-+......+.....+ ....|..++........++...+|.+..|-.....
T Consensus 189 ------------------GqLG~~~~~~~~~p~~v~~~-------~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 189 ------------------GRLGHSDSEDQLKPKLVEAL-------QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp ------------------GTTCSSSCCCEEEEEECGGG-------TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred ------------------CCcCCCCCcccccceEeccc-------CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEecCCCCCe
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
.--.+.......+...+...+..+.....+ .-.++++..+|+.++.|. .+.+-.=+.........+. .....
T Consensus 244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~G-----~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~-~l~~~ 317 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLTGLGVVKVECG-----SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ-GLQGK 317 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGTTSCEEEEEEE-----TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG-GGTTC
T ss_pred CCCCCCCCCccccEEecccCCCcEEEEeCC-----CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec-cCCCC
Q ss_pred eEEEeecCCCceEEEeecCceEEEE
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIY 900 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vw 900 (945)
.-+.++. +....+....||.|+.|
T Consensus 318 ~v~~ia~-G~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 318 KVIAIAT-GSLHCVCCTEDGEVYTW 341 (389)
T ss_dssp CEEEEEE-CSSEEEEEETTCCEEEE
T ss_pred CEEEEEe-ccCeEEEECCCCCEEEe
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=66.06 E-value=1.1e+02 Score=30.63 Aligned_cols=191 Identities=11% Similarity=0.092 Sum_probs=92.3
Q ss_pred CCCCEEEEEECCCcEEEEEccCCccccc----c--eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe----CC--
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ----H--SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----LS-- 483 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~----~--~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd----~~-- 483 (945)
|+..++++.+.+|.|+--.+..-...+. . ..+.. .+.+..+......+ .++..+..|.+.-.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556788899999998776643211110 0 01111 22333333333444 344444556544433 11
Q ss_pred ----CceEE---EecCCCCCEEEEEeee-cCCccEEEEEEcCCeEEEEEccCCC-----eeE--EecCCCCeEEEEEEcC
Q 002264 484 ----GRKLF---NFEGHEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMG-----SRV--DYDAPGHWCTTMLYSA 548 (945)
Q Consensus 484 ----~~~~~---~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~--~~~~~~~~i~~~~~s~ 548 (945)
|..+. .+. ....|.++.... ..++.+++..+.+|.++--.+.... ... .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 11111 122 233455554321 1244678899999999988764211 111 12222 3444444444
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCc-------eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+...++..+. .|.+..++...-. -++.+.-..+..+-.+....++..+++.+..|.++-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555553 7777777654211 1111111122234444444455678888999998887764
No 366
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=61.26 E-value=8.7 Score=29.54 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhhCCC
Q 002264 7 ELVFLILQFLEEEKFKESVHKLEKESGFF 35 (945)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (945)
-+.-||-.||.=.||+-|...|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999987
No 367
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=60.05 E-value=1.7e+02 Score=30.47 Aligned_cols=194 Identities=11% Similarity=0.150 Sum_probs=97.9
Q ss_pred cEEEEEEeCCCCeEEE-EEeC-------------cCcEEEEEcCCC--CcccccccccccccccCcccccccccCCCccE
Q 002264 346 TVISMDFHPSHQTLLL-VGSS-------------NGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (945)
Q Consensus 346 ~V~~v~fsp~g~~lla-sgs~-------------dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (945)
.|..+...++|+-.++ +|-. .-+|.+||+.++ +.++...+ ...... ....+
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~------------p~~~~~-~~S~l 154 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYF------------PTRLVE-KPTYF 154 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEEC------------CGGGCC-CGGGE
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEEC------------CHHhcc-cCCcc
Confidence 6777777777763332 2311 126889999998 77654222 111222 34578
Q ss_pred EEEEEc---CC----CCEEEEEE-CCCcEEEEEccCCcccccce-----------eeccc----cccEEEEEEecC----
Q 002264 410 SRVAWS---PD----GNYVGVAF-TKHLIQLYSYAGSNDLRQHS-----------QIDAH----VGAVNDLAFAYP---- 462 (945)
Q Consensus 410 ~~i~~s---~~----g~~las~~-~dg~i~vwd~~~~~~~~~~~-----------~~~~h----~~~v~~l~~s~~---- 462 (945)
..+++. |+ +.++..+. ..+-|.|+|+.+++..+... .+.+. ...|..|+.+|+
T Consensus 155 ~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~ 234 (381)
T 3q6k_A 155 GGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEG 234 (381)
T ss_dssp EEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTS
T ss_pred ceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCC
Confidence 888887 22 33444443 35679999999886544221 01111 236778888887
Q ss_pred CCeeEEEEEeCCCcEEEEe---C-CC---ceEEEecCCCC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccC-C---
Q 002264 463 NKLLCVVTCGDDKLIKVWE---L-SG---RKLFNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-M--- 528 (945)
Q Consensus 463 ~~~~~l~s~s~d~~i~vwd---~-~~---~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~--- 528 (945)
++.+++-..+ ...+.--. + +. ..+..+ +..+ .-..++.. ..+|.++++--....|..|+... .
T Consensus 235 ~~~LYf~pls-s~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D-~~~G~ly~~~~~~~aI~~w~~~~~~~~~ 311 (381)
T 3q6k_A 235 NRPAYYLAGS-AIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYD-PKTKVIFFAEANTKQVSCWNTQKMPLRM 311 (381)
T ss_dssp CCEEEEEESS-CSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEEC-TTTCEEEEEESSSSEEEEEETTSCSBCG
T ss_pred CeEEEEEECC-CCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEe-CCCCeEEEEeccCCeEEEEeCCCCcccc
Confidence 5533322222 11221111 1 11 111111 1121 22223332 13567777777888999998765 1
Q ss_pred -C-eeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 529 -G-SRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 529 -~-~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
. ........-.....+.+.++|...+.
T Consensus 312 ~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 312 KNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp GGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred CceEEEEECCCccccCeEEECCCCeEEEE
Confidence 1 11111122235667777666654443
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=57.56 E-value=1.5e+02 Score=29.18 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=0.0
Q ss_pred CccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC-
Q 002264 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK- 841 (945)
Q Consensus 763 ~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~- 841 (945)
..+.+..+........++..++.|.++ .+.+++...+..... +.. ...|.++.. +
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~-------------------~~~~~~lp~~~~~~l-l~~---~e~i~~v~~-~~ 77 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVY-------------------WIAGSQALQGSKVSL-KSR---EEKIVGAFI-RE 77 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEE-------------------EECSHHHHTSEECCC-SST---TCCEEEEEE-GG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEE-------------------EEEhhhCccCccccc-CCC---CCEEEEEEC-Cc
Q ss_pred -CCceEEecC-CCeEEEEeccC------ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecc---------c
Q 002264 842 -NDSYVMSAT-GGKISLFNMMT------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR---------V 904 (945)
Q Consensus 842 -dg~~la~~s-d~~i~iwd~~~------~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~---------~ 904 (945)
+..+++.++ +|.++-..+.. +.....++ ..+.+..+.... +...|+..+..|.++.+... .
T Consensus 78 ~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 78 KFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGAR 155 (276)
T ss_dssp GSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCC
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|...-.+... +.|.++...+++.+++..+..|.++...+
T Consensus 156 Gv~~i~L~~~-d~vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 156 GVQGIKLEKN-DETSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp CEECCCCCTT-CCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred CEEEEccCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEeEH
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.49 E-value=99 Score=37.02 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=29.5
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
.+.+++..+ +..++++-+.|+++|+|++.+++...+...
T Consensus 237 ~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEET--TTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecC--CCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 345555433 557999999999999999999888776543
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.04 E-value=3e+02 Score=31.96 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~la 422 (945)
.+.|.+|+++|....++..++..+.|...+ +.|+.-.. + .+ ....... ....|.+|+++|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~--~--~~------~~~~~~~--~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIP--L--ND------FIEAQDM--NIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEE--S--CT------TCCGGGG--GGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeE--C--cc------CCCcccc--cCCceeEEEECCCCCCEEE
Confidence 458999999997544566677667665443 23332210 0 00 0000000 1246999999984 34444
Q ss_pred EEECCCc----EEEE-EccCCccccccee-ec--c---ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEE
Q 002264 423 VAFTKHL----IQLY-SYAGSNDLRQHSQ-ID--A---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (945)
Q Consensus 423 s~~~dg~----i~vw-d~~~~~~~~~~~~-~~--~---h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~ 489 (945)
.+..+.. -.|| ..+.|+.-..... +. + ....+..+++.|.... .++.+...+. ||- ..|+.-..
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~g--l~~S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEG--IWKSSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSC--EEEESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCC--EEEECCCCcccCC
Confidence 4432211 2333 3444544332211 00 0 0113567888886543 4555553443 343 33332222
Q ss_pred ecC------CCCCEEEEEeeecCCccEEEEEEcC
Q 002264 490 FEG------HEAPVYSICPHHKENIQFIFSTAID 517 (945)
Q Consensus 490 ~~~------~~~~v~~~~~~~~~~~~~l~s~~~d 517 (945)
+.. ....+..+.++|... ..++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 221 124577888877543 345555544
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=52.28 E-value=2e+02 Score=29.09 Aligned_cols=232 Identities=8% Similarity=-0.001 Sum_probs=113.4
Q ss_pred CEEEEEECCCcEEEEEccCC-------cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE---e-CC----
Q 002264 419 NYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW---E-LS---- 483 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw---d-~~---- 483 (945)
..+++.+.+|.|+--.+.+- .-+... .+ .....+..+....... .++.-+..|.++-. + ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~-~~-ke~D~~~~~~~~~t~d--~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA-GL-KQDDIVAHFFVCSTHD--LILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------C-CC-CGGGCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc-cc-CCCCEEEEEEEeCCCC--EEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 46777888888887654321 111100 11 1334455555555555 33434445655433 3 11
Q ss_pred --CceEEEec--CCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCCe-----eEEecC-CCCeEEEEEEcCCCCE
Q 002264 484 --GRKLFNFE--GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-----RVDYDA-PGHWCTTMLYSADGSR 552 (945)
Q Consensus 484 --~~~~~~~~--~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~-~~~~i~~~~~s~~~~~ 552 (945)
|..+..+- .....|..+..... ++..+++..+.+|.++--.+..... ...+.. .+..+..+........
T Consensus 80 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 80 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD 159 (327)
T ss_dssp SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE
T ss_pred CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE
Confidence 12211111 12344555533221 2457899999999999887654221 111111 2334444444445556
Q ss_pred EEEEeecCCCCceEEEEeCC--CCce-------eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe-----
Q 002264 553 LFSCGTSKDGDSFLVEWNES--EGTI-------KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----- 618 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----- 618 (945)
++..+. .|.+..+... .-.. +..+.-..+..+..+...+.+..++..+..|.++.-.+....
T Consensus 160 ill~T~----~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~ 235 (327)
T 3uc1_A 160 LLLVSA----NGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 235 (327)
T ss_dssp EEEEET----TSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred EEEEEC----CCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcC
Confidence 666654 7788777665 2110 111111122235555444556789999999998887754322
Q ss_pred --eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 619 --ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 619 --~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
-+..+......+.+..+....+...++..+.+|.+.-++.
T Consensus 236 ~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 236 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 2222222111123444433333445555566666655555
No 372
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=51.73 E-value=2.2e+02 Score=29.40 Aligned_cols=149 Identities=10% Similarity=0.140 Sum_probs=77.0
Q ss_pred cCCCCEEEEEECCCcEEEEEccCC-------cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe----C-
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----L- 482 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd----~- 482 (945)
-|+..++++.+.+|.|+--.+..- ..+... .+. ....+..+....... .++..+..|.+.-+. .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~-~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAA-STK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEE-ECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceec-ccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 367788999999999998765321 111111 122 344555555555555 344445566655443 1
Q ss_pred -----CCceEE---EecCCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCC-----eeEEecC-CCCeEEEEEEc
Q 002264 483 -----SGRKLF---NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMG-----SRVDYDA-PGHWCTTMLYS 547 (945)
Q Consensus 483 -----~~~~~~---~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~-~~~~i~~~~~s 547 (945)
.|..+. .+. ....|.++..... .++.+|+.++..|.++...+.... ....+.. .+..+..+...
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~ 158 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence 111111 122 2345555543221 234689999999999988754321 1111211 12334444444
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCC
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.....++..+. .|.+..++..
T Consensus 159 ~~~~~i~l~T~----~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFAS----NGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEET----TSEEEEEEGG
T ss_pred CCCceEEEEeC----CCeEEEEEcc
Confidence 44445555553 6777767643
No 373
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.01 E-value=76 Score=31.92 Aligned_cols=110 Identities=15% Similarity=0.273 Sum_probs=60.0
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccc-cccCHHHHHHHH
Q 002264 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVF-STFNEELFKEIT 116 (945)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~l~ 116 (945)
+..|++.|.+|+|=+|.+.+..+. .-++..++..+|+.+|..-..-| +.-...---.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~--------------------~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA--------------------NRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHH--------------------HHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 678999999999999999876651 12233456666666665532222 111222333444
Q ss_pred HhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCccccccccCCCCCchHHHHHHHHHHHHHHhhc
Q 002264 117 QLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLC 186 (945)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~c 186 (945)
.++.-. .. ..++.-...++.+|. +|.+.+|++. + ....+++.+++|-....
T Consensus 77 ~llvev-~~----~~~~~~~~~~~~rl~-~l~~~~p~~~------------~-~r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-YD----LAEVKVDDISVARLV-RLIAELDPSE------------P-NLKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-HH----HTTCCCSHHHHHHHH-HHHTTCCTTC------------T-THHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HH----HcCCCCCHHHHHHHH-HHHHHCCCCC------------c-hHHHHHHHHHHHHhhcC
Confidence 444311 00 001111344556666 4444455532 1 35788888999987643
No 374
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=49.16 E-value=1e+02 Score=25.24 Aligned_cols=90 Identities=8% Similarity=-0.023 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHH
Q 002264 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (945)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (945)
.....+...++...-|.++...+++-.....+ ...-.-....|+|++|+..+.+........ ..+.+.+ =..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l-a~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK-AAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH-HHH
Confidence 34556666677777788888888776555443 122233456789999888876642221111 1122211 112
Q ss_pred HhHhhccCCHHHHHHHHHhhc
Q 002264 81 YLEALDRQDKAKAVDILVNDL 101 (945)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~~ 101 (945)
+...|+.++|+..+++-+
T Consensus 94 ---~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 ---LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp ---HHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHhhHHHHHHHHHHHH
Confidence 234588888888887643
No 375
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=47.82 E-value=63 Score=27.05 Aligned_cols=98 Identities=8% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccC
Q 002264 14 QFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQ 88 (945)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~ 88 (945)
.+++.--|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...+..+. . ...+ ..=.. +...|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~-~a~~-~lg~~---~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-I-KGYI-RKAAC---LVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHH-HHHHH---HHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-h-HHHH-HHHHH---HHHCC
Confidence 455666677777777765444333 112223445688888888776642222221 1 1111 11122 23457
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHh
Q 002264 89 DKAKAVDILVNDLKVFSTFNEELFKEITQL 118 (945)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (945)
+.++|+..+++-+. +...+++-...|..+
T Consensus 96 ~~~~A~~~~~~al~-l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 96 EWSKAQRAYEDALQ-VDPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HCcCCHHHHHHHHHh
Confidence 88888888876433 222344444455444
No 376
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=45.78 E-value=3.4e+02 Score=29.76 Aligned_cols=185 Identities=10% Similarity=-0.004 Sum_probs=95.4
Q ss_pred EEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCCCEEEEEeeecCCccEEEEEEcCC----eEEEEEccCC
Q 002264 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTM 528 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~ 528 (945)
+.-..+.-||+. -++.|+. ++|.+|+.+... .+|...+....|.|+..|.-++.+.+++ -..+.|..++
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs~-----~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG 401 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGSM-----AVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATG 401 (591)
T ss_dssp CEEECCSSSSSC-EEEETTE-----EECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTC
T ss_pred CeeEeCCCCCCc-eEEEeee-----EECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCC
Confidence 333455556765 4444431 456666666554 3788888888888876677777776652 3445788888
Q ss_pred CeeEEecCC--CCeEEEEEEcCCCC--EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEE
Q 002264 529 GSRVDYDAP--GHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAV 603 (945)
Q Consensus 529 ~~~~~~~~~--~~~i~~~~~s~~~~--~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 603 (945)
+.+...... .+......|.|+.. .+.+ . . .+|+.. ++.+.... .......+.|..+.. .++-
T Consensus 402 ~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~--~----~---~l~~~~-G~~i~~~~--p~~~N~~i~WdGDl~relld- 468 (591)
T 2zux_A 402 KILWGVYAGKDVGRGMAADIDPRYPGQEVWA--N----G---SLYSAK-GVKIGSGV--PSSTNFGIWWDGDLLREQLD- 468 (591)
T ss_dssp CEEEEECCSSCCCCEEEECCCTTSSSCEEEE--T----T---EEECTT-SCBCSSCC--CSCCSEEECCSSSSSCEEEE-
T ss_pred cEEEEcCCCCCCCceeEEecCCCCCceEEEe--c----C---ceECCC-CCEecCCC--CCCcceeEEECCCCcHhhhC-
Confidence 888766543 22333334444422 2222 0 1 345543 33332210 111223466766653 3332
Q ss_pred ECCCcEEEEECCCCeeEEEeecCC-------CCCCccEEEEcCCC-CEEEEE-ECCCcEEEEECC
Q 002264 604 GEDSQIKFWDMDNVNILTSTDAEG-------GLPNLPRLRFSKEG-NLLAVT-TADNGFKILANA 659 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~v~~sp~g-~~l~~~-~~dg~i~iw~~~ 659 (945)
.+.|.-|+..++.....+...+ ...+.....+--|. .-++.. .++..++||...
T Consensus 469 --~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 469 --SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp --TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred --CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 2368889887776444444332 11122223333332 233434 445579999764
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.57 E-value=1.5e+02 Score=36.42 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=30.6
Q ss_pred eeEEEeecCCCceEEEeecCceEEEEecccceEEEEe
Q 002264 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 875 i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
+.+++..+ +..+|++-+.|+++|||++.+++++.+.
T Consensus 240 ~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 55566667 7789999999999999999999988774
No 378
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.56 E-value=1.7e+02 Score=28.90 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhcC-hHHHHHHHHH--hhCCCCC---HH--HHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHH
Q 002264 6 RELVFLILQFLEEEK-FKESVHKLEK--ESGFFFN---MK--YFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIR 77 (945)
Q Consensus 6 ~e~~rli~q~L~~~g-~~~s~~~L~~--Esg~~~~---~~--~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 77 (945)
-+.++++.+++...| +.++...|++ +.++..+ +. .=.-....|++++|+..+.+ +.+. .+.+ ..
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~---~~~~-~l 136 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL---ECMA-MT 136 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH---HHHH-HH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH---HHHH-HH
Confidence 345777888888887 7777787776 3343332 11 11334577999999998887 2221 1222 22
Q ss_pred HHHHhHhhccCCHHHHHHHHHhhc
Q 002264 78 KQKYLEALDRQDKAKAVDILVNDL 101 (945)
Q Consensus 78 ~~~~lell~~~~~~~a~~~l~~~~ 101 (945)
-+. ++..|+.++|+..|++-+
T Consensus 137 ~~~---~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 137 VQI---LLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHH---HHHCCCHHHHHHHHHHHH
Confidence 222 345688889988887643
No 379
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=39.66 E-value=1.4e+02 Score=23.52 Aligned_cols=89 Identities=9% Similarity=-0.071 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHH
Q 002264 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (945)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (945)
....+...++...-|.++...+++=-....+ ...-.-....|+|++|+..+.+......+. ..+.+.+- ..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a-~~- 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKA-AA- 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH-HH-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHH-HH-
Confidence 3455666667777788887777765433332 122233456789999988876642221111 11222111 11
Q ss_pred hHhhccCCHHHHHHHHHhhc
Q 002264 82 LEALDRQDKAKAVDILVNDL 101 (945)
Q Consensus 82 lell~~~~~~~a~~~l~~~~ 101 (945)
+...|+.++|+..+++-+
T Consensus 82 --~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 82 --LEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp --HHHTTCHHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHH
Confidence 234688888888887644
No 380
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=38.72 E-value=1.2e+02 Score=29.96 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhH
Q 002264 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (945)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~le 83 (945)
+.+-..++..--|.++...|++=-....+ ...-+-.+..|++++|+..+.++.....+. ....-..-++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~ 194 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHH
Confidence 34444555566677777766665444443 223345567899999999888873332221 1112233344
Q ss_pred hhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 002264 84 ALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTL 121 (945)
Q Consensus 84 ll~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~ 121 (945)
+...++..+|+..|++-+.-- ..+++-...|+.++..
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 555566667777776644322 3355556666666553
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.22 E-value=1.1e+02 Score=34.05 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=47.2
Q ss_pred eEEEEEEcCCCCEEEEEeecC--------CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 540 WCTTMLYSADGSRLFSCGTSK--------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~--------d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
..-.|+|++.|+++++--.+. .+...+...+..+++..+.+.+.....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 345789999998655532110 1235677788888998888888877789999999999887765
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.78 E-value=1.3e+02 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=46.4
Q ss_pred eEEEEEEcCCCCEEEEEeec--------CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 540 WCTTMLYSADGSRLFSCGTS--------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~--------~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
....+.|.++|.+.++.-.. ..+...++.++..+++....+.+.....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 46789999999877643110 012337888888888887777655445689999999999888764
No 383
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.50 E-value=1.6e+02 Score=29.87 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCH---HHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccc-cccCHHHHH
Q 002264 38 MKYFEEKVQAGDW---DEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVF-STFNEELFK 113 (945)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~-~~~~~~~~~ 113 (945)
+.+|++.|.+|+| =+|.+.+..+. .+ ++..++..+|+.+|..-..-| +.-...---
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVA----------AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----------HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHH----------HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6789999999999 77777665541 11 233466666666665432222 111223333
Q ss_pred HHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCccccccccCCCCCchHHHHHHHHHHHHHHhh
Q 002264 114 EITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQL 185 (945)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~ 185 (945)
.|+.++.-. .. ..++.-....+.+|.+-+. .++++. + ....+|+.+++|-...
T Consensus 76 DL~~llvev-y~----~~~~~~~~~~~~rL~~L~~-~~~~~~------------p-~r~~fi~~ai~WS~~~ 128 (336)
T 3lpz_A 76 DLAVLLVDT-FR----QAGQRVDGASRGKLLGCLR-LFQPGE------------P-VRKRFVKEMIDWSKKF 128 (336)
T ss_dssp HHHHHHHHH-HH----HHTCCCCHHHHHHHHHHHT-TSCTTC------------H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH----HcCCCCCHHHHHHHHHHHH-hCCCCC------------c-HHHHHHHHHHHHHhhc
Confidence 444444311 00 0111113345566655444 444421 2 3477889999998653
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=35.58 E-value=76 Score=35.35 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCEEEEEECC------------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 588 NGVVQFDTTQNHFLAVGED------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
.-.++|++.|+++++-..+ +.+.+.+..+++....+..+.. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEE
Confidence 4558999999866664322 2466667778888777776643 489999999999988765
No 385
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.40 E-value=1.1e+02 Score=33.66 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=42.7
Q ss_pred CceeEEeecCCCceEEecC-C------------CeEEEEeccCceEEEEecCC-CCCeeEEEeecCCCceEEEee
Q 002264 832 EAVPCIALSKNDSYVMSAT-G------------GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 832 ~~i~~l~~s~dg~~la~~s-d------------~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~~~~~~lasg~ 892 (945)
.....|+|+++|.+.++.. . +.|..++..+++....+.+. ...++.++|+| |++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 4467899999998777432 1 14666777778877666554 35699999999 777777653
No 386
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=33.03 E-value=98 Score=26.74 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=44.3
Q ss_pred HHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 002264 43 EKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTL 121 (945)
Q Consensus 43 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~ 121 (945)
-....|+|++|+..+.+......+. . .+.+ ..=..| ...|+.++|+..+++-+. +...+++-+..|+.++..
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~p~~-~-~a~~-~lg~~~---~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQERD-P-KAHR-FLGLLY---ELEENTDKAVECYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHH-HHHHHH---HHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHH-HHHHHH---HHcCchHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 3567899999999988752222221 1 1222 222222 346999999999987543 223467777888877654
No 387
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=32.20 E-value=5.4e+02 Score=28.19 Aligned_cols=178 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCc----------------------------EEEEe-CCCceEEEecCC--CCC--
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKL----------------------------IKVWE-LSGRKLFNFEGH--EAP-- 496 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~----------------------------i~vwd-~~~~~~~~~~~~--~~~-- 496 (945)
|-..+....|.-||+. -++....+|+ +.++| .+|+.+.++.-. ...
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5566777777777776 4555544554 78899 888887765421 111
Q ss_pred -------------EEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCee--EEecCCC-----------CeEEEEEEc
Q 002264 497 -------------VYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR--VDYDAPG-----------HWCTTMLYS 547 (945)
Q Consensus 497 -------------v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~--~~~~~~~-----------~~i~~~~~s 547 (945)
..+++.. +++...++.+- .-..+..||.+.++.. ..+.... +.+.-..+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 2233321 11112233322 1224777887665442 2332211 233344444
Q ss_pred CCCCE-EEEEeecCCCCceEEEEeCCCCceeeEec-cccCcceEEEEEcCC--CCEEEEEECCC----cEEEEECCCCee
Q 002264 548 ADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTT--QNHFLAVGEDS----QIKFWDMDNVNI 619 (945)
Q Consensus 548 ~~~~~-l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~l~~~~~dg----~i~iwd~~~~~~ 619 (945)
-||+- |+.++. ++| ..|+.+.... +|.+ .+....|.|+ |-.++.+.+++ -..+.|..+|+.
T Consensus 335 gDG~dEIv~Gs~---------~iD-~dG~~L~st~~gHGD-a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 335 GDGKDEIIFGSM---------AVD-HDGKGMYSTGLGHGD-ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp SSSSCEEEETTE---------EEC-TTSCEEEECSCCCCS-CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred CCCCceEEEeee---------EEC-CCCCEeeeCCCCCCC-eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 55542 333322 122 2333333332 4443 5666777776 34666665542 355689999999
Q ss_pred EEEeecCCCCCCccEEEEcCC
Q 002264 620 LTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+.......+.+......|.|+
T Consensus 404 lw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 404 LWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEEECCSSCCCCEEEECCCTT
T ss_pred EEEcCCCCCCCceeEEecCCC
Confidence 887765433333334444454
No 388
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=32.12 E-value=1.2e+02 Score=25.28 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=51.8
Q ss_pred HHHhhcChHHHHHHHHHhhCCCCC-HH----HHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHHHHHHhHhhcc
Q 002264 14 QFLEEEKFKESVHKLEKESGFFFN-MK----YFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDR 87 (945)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~lell~~ 87 (945)
.+.+..-|.++...+++=-.+..+ .. .=.-....|+|++|+..+.+...+ +........+-.++-..=.-+...
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 455566678888777765444433 11 112345679999998877653111 111000001111111111122345
Q ss_pred CCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 002264 88 QDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (945)
Q Consensus 88 ~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (945)
++.++|+..+++-+.-. .+++.+..|..
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 88999998887755422 35665555543
No 389
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=31.37 E-value=5.7e+02 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=32.7
Q ss_pred ceEEEEEcCC--CCEEEEEECC----CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 587 SNGVVQFDTT--QNHFLAVGED----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 587 ~~~~~~~~~~--~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
......|.|+ |-.++.+.++ .-..+.|..+|+.+.......+.+......|.|+
T Consensus 369 a~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 369 AMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPS 428 (620)
T ss_dssp CEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTT
T ss_pred eeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCC
Confidence 5565667776 3455555543 2467789999999887765444333444445553
No 390
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=31.13 E-value=2.1e+02 Score=24.42 Aligned_cols=85 Identities=11% Similarity=-0.009 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCCCCC-H----HHHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHHHHHHh
Q 002264 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (945)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~l 82 (945)
..+-..++...-|.++...+++=..+..+ . ..=.-....|+|++|+..+.+...+ |++. ...|.+ =..
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l-g~~-- 98 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RFPFHA-AEC-- 98 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHH-HHH--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHH-HHH--
Confidence 33444555555666766666654333332 1 1112334567777777766653222 2221 122211 111
Q ss_pred HhhccCCHHHHHHHHHhh
Q 002264 83 EALDRQDKAKAVDILVND 100 (945)
Q Consensus 83 ell~~~~~~~a~~~l~~~ 100 (945)
++..|+.++|+..+++-
T Consensus 99 -~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 99 -LLQXGELAEAESGLFLA 115 (148)
T ss_dssp -HHHTTCHHHHHHHHHHH
T ss_pred -HHHcCCHHHHHHHHHHH
Confidence 23457777777777653
No 391
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=30.07 E-value=2e+02 Score=22.66 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhH
Q 002264 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (945)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~le 83 (945)
..+...++...-|.++...+++-.....+ ...-.-....|++++|+..+.......... ....+.+ -..
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-a~~--- 86 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL-GNA--- 86 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH-HHH---
Confidence 34444555555667776666654333222 222334456789999888876642211111 1122211 111
Q ss_pred hhccCCHHHHHHHHHhhc
Q 002264 84 ALDRQDKAKAVDILVNDL 101 (945)
Q Consensus 84 ll~~~~~~~a~~~l~~~~ 101 (945)
+...++.++|+..+++-+
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 234588888888887643
No 392
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=29.82 E-value=62 Score=23.40 Aligned_cols=33 Identities=12% Similarity=-0.050 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHhhcChHHHHHHHHHhhCCC
Q 002264 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (945)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (945)
+.++.+.|||+--|.--||.+.|..|..+-+..
T Consensus 14 K~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 14 KNREILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 357889999999999999999999999987643
No 393
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.64 E-value=2.2e+02 Score=34.89 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=29.2
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
.+.+++..++..++++-+.|+++|+|++.++ +++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~-~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN-QCVE 273 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT-EEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC-CeEE
Confidence 5667777888899999999999999999988 4443
No 394
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=28.86 E-value=36 Score=26.60 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.3
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 002264 1 MSSLSRELVFLILQFLEEE 19 (945)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (945)
|...++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999764
No 395
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=28.71 E-value=4.6e+02 Score=26.32 Aligned_cols=193 Identities=7% Similarity=0.040 Sum_probs=97.3
Q ss_pred CCCCEEEEEECCCcEEEEEccCCccccc-ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe----CC------C
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----LS------G 484 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd----~~------~ 484 (945)
|+..++++.+.+|.|+--.+..-+.... -..+.. .+.+..+....... .++..+..|.+.-.. .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 5667788999999998876542110000 001222 23444554444455 444455567655443 11 1
Q ss_pred ceEE---EecCCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCC------CeeEEecC-CCCeEEEEEEcCCCCEE
Q 002264 485 RKLF---NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTM------GSRVDYDA-PGHWCTTMLYSADGSRL 553 (945)
Q Consensus 485 ~~~~---~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~-~~~~i~~~~~s~~~~~l 553 (945)
.++. .+. ....|.++..... .++.+++..+.+|.++...+... .....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 1111 111 2234555433221 12467899999999998876421 12222222 22344444444444555
Q ss_pred EEEeecCCCCceEEEEeCCCC-------ceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 616 (945)
+..+. +|.+..+....- .-++.+.-..+..+..+..-+++. .+++.+..|..+..++..
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55553 777777765421 111112212222344443333344 788888888888777653
No 396
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.36 E-value=2.3e+02 Score=23.70 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=23.8
Q ss_pred HHHHHHHhhcChHHHHHHHHHhhCCCCC-H----HHHHHHHhccCHHHHHHHHcC
Q 002264 10 FLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSG 59 (945)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~ 59 (945)
.+-..++...-|.++...+++=.....+ . ..=.-....|+|++|+..+..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444445555566666555554333322 1 111223445666666666554
No 397
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.77 E-value=1.5e+02 Score=29.36 Aligned_cols=99 Identities=9% Similarity=0.078 Sum_probs=54.4
Q ss_pred HHHhhcChHHHHHHHHHhhCCCCC--HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHh-hccCCH
Q 002264 14 QFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA-LDRQDK 90 (945)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lel-l~~~~~ 90 (945)
-++..--|.++...|++ +-..+ .....-....|++++|+..+.++.....+. ..+.+. ..++.+ ...|+.
T Consensus 110 ~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 110 IYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAWVSLAAGGEKL 182 (291)
T ss_dssp HHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHHHHHHHCTTHH
T ss_pred HHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHHHHHHhCchHH
Confidence 34455567777777777 22222 233345567899999999988763222221 212221 112222 244778
Q ss_pred HHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 002264 91 AKAVDILVNDLKVFSTFNEELFKEITQLLT 120 (945)
Q Consensus 91 ~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~ 120 (945)
++|+.++++-+.-. ..++.-+..|+.++.
T Consensus 183 ~eA~~~~~~~l~~~-p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 183 QDAYYIFQEMADKC-SPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 88988887754432 335555555555443
No 398
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.28 E-value=1.9e+02 Score=23.48 Aligned_cols=87 Identities=8% Similarity=0.044 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHh
Q 002264 8 LVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (945)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (945)
...+-..++...-|.++...+++--.+..+ ...=.-....|+|++|+..+.+......+. ....+. .=..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~-lg~~-- 81 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIR-KATA-- 81 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH-HHHH--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHH-HHHH--
Confidence 344555667777788888888776544433 122233456799999998887642222221 112221 1222
Q ss_pred HhhccCCHHHHHHHHHhh
Q 002264 83 EALDRQDKAKAVDILVND 100 (945)
Q Consensus 83 ell~~~~~~~a~~~l~~~ 100 (945)
+...|+.++|+..+++-
T Consensus 82 -~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 -QIAVKEYASALETLDAA 98 (126)
T ss_dssp -HHHTTCHHHHHHHHHHH
T ss_pred -HHHHhCHHHHHHHHHHH
Confidence 23458889998888764
No 399
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=26.77 E-value=1.7e+02 Score=25.32 Aligned_cols=86 Identities=9% Similarity=-0.020 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhH
Q 002264 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (945)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~le 83 (945)
..+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+......+. ..+.+ .+=..
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~-~lg~~--- 88 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWS-RLGLA--- 88 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHH-HHHHH---
Confidence 44445556666677777777765444433 122233456788888888776642222111 11222 11222
Q ss_pred hhccCCHHHHHHHHHhh
Q 002264 84 ALDRQDKAKAVDILVND 100 (945)
Q Consensus 84 ll~~~~~~~a~~~l~~~ 100 (945)
+...|+.++|+..+++-
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 23357888888777654
No 400
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.77 E-value=2.7e+02 Score=22.99 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhhCCCCC--------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHH
Q 002264 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN--------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRK 78 (945)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (945)
....+-..++...-|.++...+++--.+..+ ...=.-....|+|++|+..+........+. ..+.+.+-
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a- 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRRS- 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHHH-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHHH-
Confidence 3445555566666677777777665544433 111122455677777777665532111111 11211111
Q ss_pred HHHhHhhccCCHHHHHHHHHhhc
Q 002264 79 QKYLEALDRQDKAKAVDILVNDL 101 (945)
Q Consensus 79 ~~~lell~~~~~~~a~~~l~~~~ 101 (945)
.. +...++.++|+..+++-+
T Consensus 107 ~~---~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 107 QA---LEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HH---HHHHTCHHHHHHHHHHHH
T ss_pred HH---HHHcCCHHHHHHHHHHHH
Confidence 11 223467777777776543
No 401
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=26.72 E-value=56 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHhhcChH-HHHHHHHHhhCCCCCHHHHHHHHhccCHHHHHHHHcCCC
Q 002264 4 LSRELVFLILQFLEEEKFK-ESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFT 61 (945)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~ 61 (945)
...++...|+..|.+.||- .+...+.++.|++. -++..|+..++.+.
T Consensus 20 ~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~-----------~eve~vL~~iQ~~d 67 (130)
T 2k9m_A 20 KEQELALELLNYLNEKGFLSKSVEEISDVLRCSV-----------EELEKVRQKVLRLE 67 (130)
T ss_dssp HHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH-----------HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH-----------HHHHHHHHHHhcCC
Confidence 4567888899999999994 44555555655443 23456666777764
No 402
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.45 E-value=35 Score=26.31 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC
Q 002264 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN 37 (945)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (945)
.++.+-|+++|++.| .++..|.+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467788889999999 999999999998854
No 403
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.42 E-value=82 Score=35.78 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC
Q 002264 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (945)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 913 (945)
..|.++.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34665554 356999999999999999999998877543
No 404
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.01 E-value=7 Score=31.92 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHhccCHHHHHHHHcCC
Q 002264 23 ESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60 (945)
Q Consensus 23 ~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (945)
..+..+-+|||+..++..+-..| +|+||++.+.++++
T Consensus 36 a~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 34555556899988755444434 59999999988664
No 405
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.94 E-value=3.3e+02 Score=26.49 Aligned_cols=94 Identities=11% Similarity=0.011 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhhCCCCC---H----HH----HHHHHhccCHHHHHHHHcCC-CCCCCccchhhHHH
Q 002264 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN---M----KY----FEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFF 74 (945)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~----~~----~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (945)
++...+..++....|.++...+++.-..... . .. -.-....|++++|+..+.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 4566777888888999998888765433221 0 00 11124568999999987552 1111111111 123
Q ss_pred HHHHHHHhHhhccCCHHHHHHHHHhhc
Q 002264 75 EIRKQKYLEALDRQDKAKAVDILVNDL 101 (945)
Q Consensus 75 ~i~~~~~lell~~~~~~~a~~~l~~~~ 101 (945)
.++-..-.=+...|+.++|+..+.+-+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455556799999999998755
No 406
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=23.80 E-value=2.9e+02 Score=25.46 Aligned_cols=112 Identities=8% Similarity=0.026 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC-H----HHHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHH
Q 002264 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIR 77 (945)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~ 77 (945)
..+-...+-..++..--|.++...+++--....+ . ..=.-....|++++|+..+.+.... |++. ...+.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~l- 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL---GGYMVL- 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH-
Confidence 3344556666777778889999999887776654 1 2223446689999999988775222 2221 122211
Q ss_pred HHHHhHh--------hccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 002264 78 KQKYLEA--------LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120 (945)
Q Consensus 78 ~~~~lel--------l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~ 120 (945)
=..|+++ +..|+.++|+..+++-+.- ...++.-+..|..++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 1122221 1127888999988875431 1234455555555443
No 407
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.47 E-value=48 Score=18.60 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=10.6
Q ss_pred chHHHHHHHHHHHhh
Q 002264 4 LSRELVFLILQFLEE 18 (945)
Q Consensus 4 ~~~e~~rli~q~L~~ 18 (945)
.=+|+++||-||-..
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 346888888887543
No 408
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=23.41 E-value=3.6e+02 Score=25.48 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHh
Q 002264 8 LVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (945)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (945)
++++-.-++....|.++...+++--....+ ...-.-....|+|++|+..+.+....+.+.......+...=..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~-- 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI-- 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH--
Confidence 445555566666678888877775444332 2333456678999999988876533322211100112222222
Q ss_pred HhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 002264 83 EALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (945)
Q Consensus 83 ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll 119 (945)
+...|+.++|+..+.+-+.-- ..++.-+..|+.+.
T Consensus 84 -~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 84 -LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF 118 (272)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred -HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 234588888888887644321 22344455555444
No 409
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=23.28 E-value=2.1e+02 Score=22.04 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=42.4
Q ss_pred HHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhcc
Q 002264 13 LQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87 (945)
Q Consensus 13 ~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~ 87 (945)
.-++...-|.++...+++-..+..+ ...=.-....|+|++|+..+.+............+.+ ..-.=++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----~l~~~~~~~ 89 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA----AKADALRYI 89 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH----HHHHHHTTC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH----HHHHHHHHH
Confidence 3344555567776666654333222 1122234567888888887766422211100111211 111223456
Q ss_pred -CCHHHHHHHHHhhc
Q 002264 88 -QDKAKAVDILVNDL 101 (945)
Q Consensus 88 -~~~~~a~~~l~~~~ 101 (945)
|+.++|+..+++-+
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 78888888887654
No 410
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.23 E-value=5.6e+02 Score=25.46 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=100.0
Q ss_pred CCCCEEEEEECCCcEEEEEccCCccccc----c--eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C---CC-
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ----H--SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---SG- 484 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~----~--~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~---~~- 484 (945)
++..++++.+.+|.|+--.+..-...+. . ..+.. ...+..+......+ .++..+..|.++-.. . ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~--~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHD--YLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCC--EEEEEECCCeEEEEEHHHCCCCC
Confidence 4567788999999999887653221110 0 01222 23344554444445 455566677766555 1 11
Q ss_pred -----ce---EEEecCCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCC-----eeEEecC-CCCeEEEEEEcCC
Q 002264 485 -----RK---LFNFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMG-----SRVDYDA-PGHWCTTMLYSAD 549 (945)
Q Consensus 485 -----~~---~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~-~~~~i~~~~~s~~ 549 (945)
.. ...+. ....|.++..... .+...++..+..|.++...+.... ....+.. .+..+..+....+
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 10 00122 1234444432221 134678889999999988764321 1111222 2334555544444
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCC-------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
+..++..+. .|.+..+....- .-++.+.-..+..+-.+..-.++..+++.+..|.....++..
T Consensus 162 ~~~i~l~T~----~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSK----KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEET----TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeC----CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 555666654 778877776431 111112211222344444444566788999999998888754
No 411
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=22.83 E-value=3.7e+02 Score=26.24 Aligned_cols=104 Identities=10% Similarity=-0.028 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcC--hHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHH
Q 002264 9 VFLILQFLEEEK--FKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (945)
Q Consensus 9 ~rli~q~L~~~g--~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (945)
...+...+...| |.++...+++-..+..+ ...-.-....|++++|+..+.+......+. ....+. .-
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~----l~ 166 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLY----IG 166 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--SHHHHH----HH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc--HHHHHH----HH
Confidence 333444445555 55566666655444332 122233445677777777665531111110 001111 11
Q ss_pred hHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 002264 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (945)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll 119 (945)
.-+...|+.++|+..+++-+.-. ..++..+..++.+.
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 12234577777777777643322 22344444444443
No 412
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=22.25 E-value=66 Score=28.60 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhcChHHHHH-----HHHHhhCCCCC
Q 002264 5 SRELVFLILQFLEEEKFKESVH-----KLEKESGFFFN 37 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~-----~L~~Esg~~~~ 37 (945)
.++..+-|.+||+..||++.+. .++.|||+...
T Consensus 14 ~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 14 MKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 3566889999999999998765 58999998664
No 413
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.24 E-value=6.3e+02 Score=27.19 Aligned_cols=64 Identities=11% Similarity=-0.004 Sum_probs=30.5
Q ss_pred hhCCCCC----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCHHHHHHHHHh
Q 002264 31 ESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVN 99 (945)
Q Consensus 31 Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~ 99 (945)
+.|+..+ -..+......|++++|++++..+.... ..+....|...-..|. ..|+.++|+.+|++
T Consensus 133 ~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G--~~Pd~~ty~~Li~~~~---~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 133 AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE--VVPEEPELAALLKVSM---DTKNADKVYKTLQR 200 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHh---hCCCHHHHHHHHHH
Confidence 4466655 233445556677777766665542110 0011122333333322 34667777766654
No 414
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.84 E-value=1.9e+02 Score=26.95 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC--------HHHHHHHHhccCHHHHHHHHcCCC-CCCCccchhhHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--------MKYFEEKVQAGDWDEVEKYLSGFT-KVDDNRYSMKIFFE 75 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (945)
.+....+-..++...-|.++...|++=-....+ ...-......|+|++|+..+.++. ..|++......+|.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345667778888889999999998874322111 222345567899999999888752 22333221223333
Q ss_pred HHHHHHhH---------------hhccCCHHHHHHHHHhhcccc
Q 002264 76 IRKQKYLE---------------ALDRQDKAKAVDILVNDLKVF 104 (945)
Q Consensus 76 i~~~~~le---------------ll~~~~~~~a~~~l~~~~~~~ 104 (945)
+- ..|.+ +...|+.++|+..+++-+.-.
T Consensus 84 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 84 RG-LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HH-HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 22 22322 123578899999998866543
No 415
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=21.68 E-value=3.3e+02 Score=22.15 Aligned_cols=88 Identities=13% Similarity=-0.011 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHH
Q 002264 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (945)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (945)
....+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+........+. ..+.+.+ -..
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l-~~~- 86 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFL-GQC- 86 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH-
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHH-HHH-
Confidence 3455555666667788888777765444333 122233456799999998876642222111 1122221 222
Q ss_pred hHhhccCCHHHHHHHHHhh
Q 002264 82 LEALDRQDKAKAVDILVND 100 (945)
Q Consensus 82 lell~~~~~~~a~~~l~~~ 100 (945)
+...|+.++|+..+++-
T Consensus 87 --~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 --QLEMESYDEAIANLQRA 103 (137)
T ss_dssp --HHHTTCHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHH
Confidence 23358888888888764
No 416
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=21.55 E-value=3.9e+02 Score=22.93 Aligned_cols=103 Identities=15% Similarity=0.033 Sum_probs=54.1
Q ss_pred HHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHh
Q 002264 10 FLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (945)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lel 84 (945)
.+...++...-|.++...+++--....+ ...-.-....|++++|+..+.+........ ..+.+.+ -.-+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~----a~~~ 86 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVL----GLTY 86 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHH----HHHH
Confidence 3444455556677777777654443332 222334567899999999887752221111 1121111 1122
Q ss_pred hccCCHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 002264 85 LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (945)
Q Consensus 85 l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll 119 (945)
...|+.++|+..+++-+.-. ..++.-+..++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVAL 120 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHH
Confidence 34588999998887654322 22344444454443
No 417
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=21.20 E-value=1.6e+02 Score=24.14 Aligned_cols=50 Identities=10% Similarity=-0.158 Sum_probs=23.3
Q ss_pred HHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcC
Q 002264 10 FLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSG 59 (945)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~ 59 (945)
.+-..++...-|.++...|++=.....+ ...=.-....|++++|+..+.+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444455555555555555554433332 1111123345666666665544
No 418
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=20.89 E-value=5e+02 Score=23.99 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=6.5
Q ss_pred hccCHHHHHHHHcC
Q 002264 46 QAGDWDEVEKYLSG 59 (945)
Q Consensus 46 ~~g~w~~~~~~l~~ 59 (945)
..|++++|+.++.+
T Consensus 117 ~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 117 EQKRYEEAYQRLLE 130 (252)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 34455555444443
No 419
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=20.79 E-value=53 Score=22.64 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhhc
Q 002264 5 SRELVFLILQFLEEE 19 (945)
Q Consensus 5 ~~e~~rli~q~L~~~ 19 (945)
++++...|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 567899999999764
No 420
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=20.43 E-value=1.9e+02 Score=24.85 Aligned_cols=100 Identities=8% Similarity=-0.000 Sum_probs=53.2
Q ss_pred HHhhcChHHHHHHHHHhhCCCCC-H----HHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCC
Q 002264 15 FLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQD 89 (945)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~ 89 (945)
|+...-|.++...+++=-.+..+ . ..=.-....|++++|+..+.+......+. . .+.+.+- ..| +..++
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~la-~~~---~~~~~ 114 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ-K-DLVLKIA-ELL---CKNDV 114 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHHH-HHH---HHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-H-HHHHHHH-HHH---HHcCC
Confidence 45556678888888776555544 1 12223456799999999887742222221 1 1222221 122 23466
Q ss_pred HHHHHH-HHHhhcccccccCHHHHHHHHHhhcc
Q 002264 90 KAKAVD-ILVNDLKVFSTFNEELFKEITQLLTL 121 (945)
Q Consensus 90 ~~~a~~-~l~~~~~~~~~~~~~~~~~l~~ll~~ 121 (945)
..+|.. ++++-+. +...++.-+.-+..++..
T Consensus 115 ~~~aa~~~~~~al~-l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 115 TDGRAKYWVERAAK-LFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp SSSHHHHHHHHHHH-HSTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHH
Confidence 665544 4444222 223466766666666654
No 421
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=20.09 E-value=3.3e+02 Score=21.59 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=54.0
Q ss_pred HHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHh
Q 002264 10 FLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (945)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lel 84 (945)
.+..-++...-|.++...+++--....+ ...-.-....|++++|+..+.+........ ....+.+ -.. +
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-~~~---~ 79 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNL-GNA---Y 79 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---H
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHH-HHH---H
Confidence 3445555666677777766654332222 122333456799999999887652221111 1122211 111 3
Q ss_pred hccCCHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 002264 85 LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (945)
Q Consensus 85 l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll 119 (945)
...|+.++|+..+.+-+... ..++..+..++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 113 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 45689999999988754322 22344444444443
No 422
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=20.01 E-value=3.3e+02 Score=21.57 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhhCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHHHHHH
Q 002264 8 LVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKY 81 (945)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~ 81 (945)
...+-..++...-|.++...+++-.....+ ...-.-....|+|++|+..+.+.... +...........++...=
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344555566666777777777765443332 22223345679999999988764211 110000001111222222
Q ss_pred hHhhccCCHHHHHHHHHhhcc
Q 002264 82 LEALDRQDKAKAVDILVNDLK 102 (945)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~ 102 (945)
.-+...|+.++|+..+.+-+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 223456899999998877543
Done!