BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002265
(945 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Query: 510 SFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLD 569
+ P SI L+RLR L I L+EL L A Q + L+
Sbjct: 141 ALPASIASLNRLRELSIRA---------CPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 570 PNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGK 629
IR +P ++ L +LK L + + L + L L++LD+R C LR P G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 630 LMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKC 689
++ L+ + +L +P+ I +LT L LD + G V N RL SL QL C
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD---LRGCV---NLSRLPSLIA-QLPANC 304
Query: 690 SI 691
I
Sbjct: 305 II 306
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGI 627
+D + E+P ++ L+ L L+ + LP ++ L L++L IR C L ELP +
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 628 GK---------LMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLE 678
L+N++S L E ++ +P I+ L +L++L G L
Sbjct: 171 ASTDASGEHQGLVNLQS-LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 679 SLKNLQLRG 687
L+ L LRG
Sbjct: 230 KLEELDLRG 238
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 573 IREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMN 632
+ + P +L HL++ + G+ LP+T + L+ L + R LR LPA I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 633 MRSL 636
+R L
Sbjct: 152 LREL 155
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 19/136 (13%)
Query: 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALV 555
V ++ L L + G S P SI L L+SL I + S L L L L
Sbjct: 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-------SALGPAIHHLPKLEELD 235
Query: 556 IRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELG-IEILPETLCELYNLQKLDI 614
+R + ++R P LK L L + + LP + L L+KLD+
Sbjct: 236 LRGCT-----------ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 615 RRCRNLRELPAGIGKL 630
R C NL LP+ I +L
Sbjct: 285 RGCVNLSRLPSLIAQL 300
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 23 EKWRLVTGVEQEVEKLTKNLRAIQAVL----EDAEQRQMKQDKVVTLWLDQLRDASYDME 78
E+++L GV++ +E L K L + A L E ++ QDK LW D++R+ SY +E
Sbjct: 16 EEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDK---LWADEVRELSYVIE 72
Query: 79 DVLDEWITETRKLQLDEGRDDDDANAFVTLLTKVCYFFPAASNCFG 124
DV+D+++ +Q+D + DD+ N F L + + G
Sbjct: 73 DVVDKFL-----VQVDGIKSDDNNNKFKGLXKRTTELLKKVKHKHG 113
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 24/113 (21%)
Query: 240 FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVA-RMMGTTELDIISIEQ-LA 297
L+LDDVWD P+ LK + +IL+TTR+ SV +MG ++ +E L
Sbjct: 239 LLILDDVWD-------PWV--LKAFDNQCQILLTTRDKSVTDSVMGPKH--VVPVESGLG 287
Query: 298 EE---ECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR 347
E E SLF + +E L + I + CKG PL +IG LLR
Sbjct: 288 REKGLEILSLFVNM--------KKEDLPAEAHSIIKECKGSPLVVSLIGALLR 332
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 41/211 (19%)
Query: 240 FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVA-RMMGTTELDIISIEQ-LA 297
L+LDDVWD W LK +IL+TTR+ SV +MG ++ +E L
Sbjct: 239 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKY--VVPVESSLG 287
Query: 298 EEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR---------- 347
+E+ + V ++ L I + CKG PL +IG LLR
Sbjct: 288 KEKGLEILSLFVNMKKAD-----LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYL 342
Query: 348 SKSTVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKDYNMD 407
+ ++++ I +S ++ E + + + + + D +K ++ ++ KD +
Sbjct: 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVP 396
Query: 408 KHELIDLWMAQDYLNAKANKEMETIGEEYFN 438
L LW + +E+E I +E+ N
Sbjct: 397 TKVLCILWDME-------TEEVEDILQEFVN 420
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 18/124 (14%)
Query: 539 SILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNV-RKLIHLKYLNLSELGIE 597
S+ + +F KL L+ LV+ + N ++ +P V KL +L YLNL+ ++
Sbjct: 99 SLPNGVFDKLTNLKELVLVE------------NQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 598 ILPETLCE-LYNLQKLDIRRCRNLRELPAGI-GKLMNMRSLLNGETYSLKYMPIGI-SKL 654
LP+ + + L NL +LD+ L+ LP G+ KL ++ L + LK +P G+ +L
Sbjct: 147 SLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRL 204
Query: 655 TSLR 658
TSL+
Sbjct: 205 TSLQ 208
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 240 FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVA-RMMGTTELDIISIEQ-LA 297
L+LDDVWD P+ LK + +IL+TT + SV +MG ++ +E L
Sbjct: 246 LLILDDVWD-------PWV--LKAFDNQCQILLTTSDKSVTDSVMGPKH--VVPVESGLG 294
Query: 298 EE---ECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR 347
E E SLF + +E L + I + CKG PL +IG LLR
Sbjct: 295 REKGLEILSLFVNM--------KKEDLPAEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 240 FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVA-RMMGTTELDIISIEQ-LA 297
L+LDDVWD W LK +IL+TTR+ SV +MG ++ +E L
Sbjct: 245 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKY--VVPVESSLG 293
Query: 298 EEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR 347
+E+ + V ++ L I + CKG PL +IG LLR
Sbjct: 294 KEKGLEILSLFVNMKKAD-----LPEQAHSIIKECKGSPLVVSLIGALLR 338
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 566 FHLDPNSIREIPKNV-RKLIHLKYLNLSELGIEILPETLCE-LYNLQKLDIRRCRNLREL 623
+L N ++ +P V KL L YLNLS ++ LP + + L L++L + L+ L
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSL 115
Query: 624 PAGI-GKLMNMRSLLNGETYSLKYMPIGI-SKLTSLR 658
P G+ KL ++ L + LK +P G+ +LTSL+
Sbjct: 116 PDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQ 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 598 ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGI-SKLTS 656
LP+ EL NL LD+ +C+ + P L +++ +LN + LK +P GI +LTS
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTS 519
Query: 657 LRTL 660
L+ +
Sbjct: 520 LQKI 523
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 294 EQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA---AKVIGNLLRSKS 350
E+ +E L ER+ F + DRE ++++G+K G+ + A + + L +
Sbjct: 44 EEKLKELAAELGERIFVFPANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRM 103
Query: 351 TVEEWESILESEMWEVEEIGQGLLAPLLLSYN 382
+ E+W+++L + V + + L P++ N
Sbjct: 104 SDEDWDAVLTVNLTSVFNLTRELTHPMMRRRN 135
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 294 EQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA---AKVIGNLLRSKS 350
E+ +E L ER+ F + DRE ++++G+K G+ + A + + L +
Sbjct: 41 EEKLKELAAELGERIFVFPANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRM 100
Query: 351 TVEEWESILESEMWEVEEIGQGLLAPLLLSYN 382
+ E+W+++L + V + + L P++ N
Sbjct: 101 SDEDWDAVLTVNLTSVFNLTRELTHPMMRRRN 132
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 224 AQLAYNNDEVNSRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKIL 271
AQLA +E K I + W G C P F L ND + GK++
Sbjct: 15 AQLAKGKEE---HKPIVVAFTATWCGPCKMIAPLFETLSND-YAGKVI 58
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 567 HLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAG 626
+L+ NS+ E+P ++ L +L+ L+LS + LP L + L+ + LP
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE 311
Query: 627 IGKLMNMRSL 636
G L N++ L
Sbjct: 312 FGNLCNLQFL 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,234,554
Number of Sequences: 62578
Number of extensions: 1047808
Number of successful extensions: 2887
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2847
Number of HSP's gapped (non-prelim): 56
length of query: 945
length of database: 14,973,337
effective HSP length: 108
effective length of query: 837
effective length of database: 8,214,913
effective search space: 6875882181
effective search space used: 6875882181
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)