Query 002265
Match_columns 945
No_of_seqs 453 out of 3902
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 20:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.2E-80 1.1E-84 729.6 40.9 715 3-789 2-786 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-66 8.3E-71 648.2 41.7 684 136-921 133-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-36 3.1E-41 327.5 9.0 230 186-424 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.9E-25 4.1E-30 282.0 17.0 388 496-919 69-487 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.5E-24 5.3E-29 271.9 14.8 339 568-920 219-584 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-24 3E-29 231.6 -4.1 345 495-924 31-379 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 3.6E-23 7.7E-28 220.9 -6.0 334 495-914 54-393 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.5E-23 3.2E-28 213.6 -8.7 239 497-784 69-308 (565)
9 PLN03210 Resistant to P. syrin 99.8 1.5E-19 3.2E-24 228.1 18.2 319 495-900 588-910 (1153)
10 KOG4194 Membrane glycoprotein 99.8 2.3E-19 5.1E-24 191.2 5.1 252 519-805 78-351 (873)
11 KOG4194 Membrane glycoprotein 99.8 2.1E-19 4.5E-24 191.6 2.9 335 497-915 103-447 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 9.9E-21 2.1E-25 193.2 -7.3 368 499-917 48-468 (565)
13 KOG0618 Serine/threonine phosp 99.7 6.4E-19 1.4E-23 198.2 -6.1 380 504-919 6-488 (1081)
14 KOG0618 Serine/threonine phosp 99.6 4.5E-17 9.8E-22 183.5 -1.4 145 497-667 46-190 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 3.1E-14 6.7E-19 166.6 13.3 249 568-919 208-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.4 3E-13 6.5E-18 158.5 11.9 131 500-668 205-335 (788)
17 KOG0617 Ras suppressor protein 99.4 5.6E-15 1.2E-19 134.0 -4.5 155 514-688 28-183 (264)
18 KOG0617 Ras suppressor protein 99.4 9.5E-15 2E-19 132.6 -3.5 129 582-723 31-161 (264)
19 KOG4658 Apoptotic ATPase [Sign 99.4 1.1E-13 2.3E-18 165.9 3.8 252 516-812 520-787 (889)
20 PRK15370 E3 ubiquitin-protein 99.4 6E-13 1.3E-17 157.1 8.2 91 568-668 185-275 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 1.3E-12 2.9E-17 154.2 9.6 241 498-806 180-426 (754)
22 KOG4237 Extracellular matrix p 99.0 2.6E-11 5.6E-16 125.0 -2.7 143 502-665 52-198 (498)
23 PRK00080 ruvB Holliday junctio 99.0 2.6E-09 5.7E-14 116.6 11.6 243 181-448 25-309 (328)
24 KOG4237 Extracellular matrix p 98.9 1.1E-10 2.5E-15 120.3 -0.3 263 495-784 66-357 (498)
25 PRK04841 transcriptional regul 98.9 3.9E-08 8.4E-13 124.2 20.3 249 181-474 14-332 (903)
26 TIGR00635 ruvB Holliday juncti 98.9 8.6E-09 1.9E-13 111.9 11.2 234 181-447 4-287 (305)
27 cd00116 LRR_RI Leucine-rich re 98.9 5.8E-10 1.3E-14 122.4 1.3 71 706-786 215-291 (319)
28 KOG0532 Leucine-rich repeat (L 98.9 2.5E-10 5.3E-15 123.2 -2.0 116 568-686 82-197 (722)
29 PF01637 Arch_ATPase: Archaeal 98.8 1.8E-08 3.9E-13 105.0 10.4 149 183-341 1-233 (234)
30 PF05496 RuvB_N: Holliday junc 98.8 3E-08 6.6E-13 97.2 10.8 155 181-339 24-218 (233)
31 cd00116 LRR_RI Leucine-rich re 98.8 7.3E-10 1.6E-14 121.7 -1.0 247 513-806 17-289 (319)
32 KOG0532 Leucine-rich repeat (L 98.8 1.5E-10 3.3E-15 124.8 -6.4 167 501-677 80-256 (722)
33 TIGR03015 pepcterm_ATPase puta 98.8 1.1E-07 2.3E-12 101.5 14.7 139 207-346 43-242 (269)
34 PRK00411 cdc6 cell division co 98.8 6.3E-07 1.4E-11 101.3 21.8 269 179-463 28-374 (394)
35 PF05729 NACHT: NACHT domain 98.6 1.1E-07 2.5E-12 93.0 9.1 100 208-309 1-163 (166)
36 COG4886 Leucine-rich repeat (L 98.6 2.2E-08 4.7E-13 113.3 3.6 183 545-791 112-295 (394)
37 KOG4341 F-box protein containi 98.6 3.2E-09 6.9E-14 110.9 -3.3 158 749-945 293-458 (483)
38 PRK06893 DNA replication initi 98.6 9.2E-07 2E-11 91.0 14.4 128 207-340 39-201 (229)
39 COG2256 MGS1 ATPase related to 98.6 3.1E-07 6.7E-12 96.5 10.4 194 180-386 29-265 (436)
40 PF14580 LRR_9: Leucine-rich r 98.5 2.5E-08 5.4E-13 96.1 1.6 105 545-665 15-123 (175)
41 PRK13342 recombination factor 98.5 1E-06 2.3E-11 99.2 13.9 152 181-342 12-196 (413)
42 PF14580 LRR_9: Leucine-rich r 98.5 8.6E-08 1.9E-12 92.4 3.5 128 516-666 16-151 (175)
43 KOG1259 Nischarin, modulator o 98.4 3.9E-08 8.5E-13 98.0 -0.2 56 584-641 284-339 (490)
44 TIGR02928 orc1/cdc6 family rep 98.4 1.8E-05 4E-10 88.4 20.9 256 180-450 14-351 (365)
45 COG2909 MalT ATP-dependent tra 98.4 4.9E-06 1.1E-10 95.6 16.0 245 191-475 25-339 (894)
46 COG4886 Leucine-rich repeat (L 98.4 2.4E-07 5.1E-12 104.9 5.5 117 568-686 147-263 (394)
47 COG3899 Predicted ATPase [Gene 98.4 3.2E-06 6.9E-11 102.8 14.0 270 182-474 1-386 (849)
48 PRK14961 DNA polymerase III su 98.4 6.4E-06 1.4E-10 91.1 15.0 149 181-338 16-216 (363)
49 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.9E-06 1.3E-10 85.5 13.8 146 186-342 22-201 (226)
50 COG2255 RuvB Holliday junction 98.3 3.1E-06 6.6E-11 84.8 10.8 153 181-337 26-218 (332)
51 PRK09087 hypothetical protein; 98.3 5.5E-06 1.2E-10 84.6 12.6 127 207-340 44-193 (226)
52 KOG3207 Beta-tubulin folding c 98.3 1E-07 2.3E-12 100.3 0.0 201 572-856 109-317 (505)
53 PRK04195 replication factor C 98.3 2.3E-05 4.9E-10 90.3 18.9 220 181-423 14-271 (482)
54 KOG3207 Beta-tubulin folding c 98.3 2.3E-07 5.1E-12 97.7 1.4 157 495-668 120-284 (505)
55 PRK14960 DNA polymerase III su 98.3 8.2E-06 1.8E-10 93.1 13.8 149 181-338 15-215 (702)
56 PRK07003 DNA polymerase III su 98.3 5.9E-06 1.3E-10 95.2 12.5 153 181-342 16-221 (830)
57 PRK14963 DNA polymerase III su 98.3 1.1E-05 2.5E-10 91.9 14.3 150 181-339 14-214 (504)
58 PRK06645 DNA polymerase III su 98.2 1.3E-05 2.8E-10 90.9 14.4 148 181-337 21-224 (507)
59 KOG1259 Nischarin, modulator o 98.2 1.8E-07 3.9E-12 93.3 -1.1 84 580-666 325-410 (490)
60 PRK14956 DNA polymerase III su 98.2 9.9E-06 2.1E-10 89.9 12.2 148 181-337 18-217 (484)
61 PRK08727 hypothetical protein; 98.2 1.8E-05 3.9E-10 81.6 13.4 126 207-338 41-200 (233)
62 PRK08903 DnaA regulatory inact 98.2 1.4E-05 3.1E-10 82.5 12.6 135 206-346 41-203 (227)
63 PTZ00112 origin recognition co 98.2 1E-05 2.2E-10 93.7 12.2 169 179-347 753-987 (1164)
64 PRK05564 DNA polymerase III su 98.2 1.6E-05 3.4E-10 86.3 13.3 147 181-340 4-188 (313)
65 PRK14957 DNA polymerase III su 98.2 2.1E-05 4.6E-10 89.8 14.1 154 181-343 16-222 (546)
66 PRK14962 DNA polymerase III su 98.2 2.1E-05 4.5E-10 89.1 13.9 170 181-359 14-239 (472)
67 PRK14949 DNA polymerase III su 98.2 2E-05 4.4E-10 92.8 14.0 153 181-342 16-221 (944)
68 PLN03150 hypothetical protein; 98.2 3.3E-06 7.1E-11 100.1 7.6 86 568-653 425-512 (623)
69 PLN03150 hypothetical protein; 98.1 2E-06 4.3E-11 102.0 5.6 83 585-667 419-502 (623)
70 PRK12402 replication factor C 98.1 2.2E-05 4.8E-10 86.7 13.7 149 181-339 15-223 (337)
71 PRK06620 hypothetical protein; 98.1 4.3E-05 9.4E-10 77.3 14.4 119 208-335 45-182 (214)
72 PRK12323 DNA polymerase III su 98.1 1.7E-05 3.7E-10 90.3 12.5 151 181-340 16-223 (700)
73 PLN03025 replication factor C 98.1 1.3E-05 2.8E-10 87.3 11.2 146 181-336 13-194 (319)
74 PRK13341 recombination factor 98.1 1.4E-05 3.1E-10 94.7 12.3 146 181-335 28-210 (725)
75 PRK08084 DNA replication initi 98.1 4.3E-05 9.3E-10 78.9 14.3 128 207-340 45-207 (235)
76 PRK05896 DNA polymerase III su 98.1 2.6E-05 5.6E-10 89.1 13.1 155 181-344 16-223 (605)
77 KOG2120 SCF ubiquitin ligase, 98.1 1.8E-07 4E-12 93.4 -3.5 159 604-783 207-373 (419)
78 PRK07471 DNA polymerase III su 98.1 3.4E-05 7.3E-10 84.5 13.6 149 181-342 19-238 (365)
79 PRK08691 DNA polymerase III su 98.1 1.8E-05 3.8E-10 91.4 11.7 149 181-338 16-216 (709)
80 PF13173 AAA_14: AAA domain 98.1 8.6E-06 1.9E-10 75.5 7.4 92 208-301 3-127 (128)
81 PRK14964 DNA polymerase III su 98.1 3.6E-05 7.9E-10 86.6 13.4 148 181-337 13-212 (491)
82 PRK07940 DNA polymerase III su 98.1 3E-05 6.5E-10 85.6 12.5 152 181-342 5-213 (394)
83 PRK15386 type III secretion pr 98.1 7.5E-06 1.6E-10 88.6 7.4 63 583-650 51-113 (426)
84 PRK00440 rfc replication facto 98.0 4.1E-05 8.9E-10 83.9 12.8 148 181-338 17-199 (319)
85 PF13855 LRR_8: Leucine rich r 98.0 4.4E-06 9.6E-11 65.9 3.7 50 568-617 8-59 (61)
86 PRK07994 DNA polymerase III su 98.0 4.3E-05 9.4E-10 88.7 13.1 153 181-342 16-221 (647)
87 PRK09112 DNA polymerase III su 98.0 5.6E-05 1.2E-09 82.3 13.2 152 180-342 22-240 (351)
88 PRK14951 DNA polymerase III su 98.0 6.3E-05 1.4E-09 87.2 13.8 150 181-339 16-222 (618)
89 TIGR02397 dnaX_nterm DNA polym 98.0 0.00011 2.4E-09 81.8 15.0 153 181-342 14-218 (355)
90 PF05673 DUF815: Protein of un 98.0 0.00018 3.9E-09 72.1 14.6 103 179-282 25-156 (249)
91 TIGR01242 26Sp45 26S proteasom 98.0 2E-05 4.4E-10 87.5 8.8 153 179-336 120-328 (364)
92 KOG2120 SCF ubiquitin ligase, 98.0 2.3E-07 5.1E-12 92.7 -5.8 115 705-850 253-374 (419)
93 TIGR00678 holB DNA polymerase 97.9 9.7E-05 2.1E-09 73.7 12.5 120 207-337 14-186 (188)
94 PF13855 LRR_8: Leucine rich r 97.9 6.4E-06 1.4E-10 64.9 3.2 57 584-641 1-59 (61)
95 PRK14958 DNA polymerase III su 97.9 6.4E-05 1.4E-09 86.1 12.5 149 181-338 16-216 (509)
96 PRK14955 DNA polymerase III su 97.9 7.2E-05 1.6E-09 83.8 12.7 152 181-341 16-228 (397)
97 PRK14959 DNA polymerase III su 97.9 9.3E-05 2E-09 85.2 13.6 157 181-346 16-225 (624)
98 cd00009 AAA The AAA+ (ATPases 97.9 2.2E-05 4.8E-10 74.8 7.1 90 184-278 1-131 (151)
99 KOG2028 ATPase related to the 97.9 4.3E-05 9.4E-10 78.9 8.7 99 205-308 160-293 (554)
100 PRK14969 DNA polymerase III su 97.9 9.5E-05 2E-09 85.4 12.1 153 181-342 16-221 (527)
101 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 58.1 2.9 40 584-624 1-40 (44)
102 TIGR02903 spore_lon_C ATP-depe 97.9 0.0013 2.9E-08 77.5 21.7 45 181-230 154-198 (615)
103 KOG1859 Leucine-rich repeat pr 97.8 1.2E-06 2.5E-11 97.9 -3.6 117 568-688 171-289 (1096)
104 KOG0531 Protein phosphatase 1, 97.8 1.7E-06 3.6E-11 98.0 -2.6 185 568-784 79-266 (414)
105 KOG1909 Ran GTPase-activating 97.8 1.6E-06 3.4E-11 89.2 -2.6 226 543-850 24-281 (382)
106 PRK05642 DNA replication initi 97.8 0.00028 6E-09 72.9 13.9 128 207-340 45-206 (234)
107 PRK14954 DNA polymerase III su 97.8 0.00022 4.7E-09 83.2 14.4 153 181-342 16-229 (620)
108 PRK09111 DNA polymerase III su 97.8 0.00019 4.1E-09 83.5 13.9 151 181-340 24-231 (598)
109 PRK14950 DNA polymerase III su 97.8 0.00023 4.9E-09 83.8 14.6 152 181-341 16-220 (585)
110 KOG4341 F-box protein containi 97.8 5.4E-07 1.2E-11 94.6 -6.5 264 584-924 138-418 (483)
111 PRK08451 DNA polymerase III su 97.8 0.00026 5.5E-09 80.7 14.2 151 181-340 14-216 (535)
112 PHA02544 44 clamp loader, smal 97.8 8.2E-05 1.8E-09 81.3 10.0 122 181-307 21-171 (316)
113 PRK14952 DNA polymerase III su 97.8 0.00027 5.7E-09 81.8 14.4 156 181-345 13-223 (584)
114 PRK14970 DNA polymerase III su 97.8 0.00023 5E-09 79.4 13.7 148 181-337 17-204 (367)
115 PF00308 Bac_DnaA: Bacterial d 97.8 0.00017 3.6E-09 73.5 11.4 147 182-336 10-202 (219)
116 KOG0989 Replication factor C, 97.8 0.00013 2.9E-09 74.2 10.2 153 181-343 36-232 (346)
117 PRK07133 DNA polymerase III su 97.8 0.00033 7.1E-09 82.0 14.5 154 181-343 18-221 (725)
118 PRK07764 DNA polymerase III su 97.8 0.00028 6.1E-09 85.0 14.3 148 181-337 15-216 (824)
119 PRK03992 proteasome-activating 97.8 6.8E-05 1.5E-09 83.5 8.4 131 180-310 130-316 (389)
120 PRK06305 DNA polymerase III su 97.7 0.00035 7.7E-09 79.1 13.7 153 181-342 17-223 (451)
121 PRK14953 DNA polymerase III su 97.7 0.00063 1.4E-08 77.6 15.3 150 181-339 16-217 (486)
122 TIGR02881 spore_V_K stage V sp 97.7 0.00037 8E-09 73.5 12.5 129 182-310 7-192 (261)
123 KOG1909 Ran GTPase-activating 97.7 7E-06 1.5E-10 84.6 -0.7 241 515-806 26-309 (382)
124 CHL00181 cbbX CbbX; Provisiona 97.7 0.00053 1.1E-08 72.8 12.9 102 209-310 61-210 (287)
125 PRK06647 DNA polymerase III su 97.6 0.00063 1.4E-08 78.9 14.5 150 181-339 16-217 (563)
126 PRK14948 DNA polymerase III su 97.6 0.00066 1.4E-08 79.7 14.6 151 181-340 16-220 (620)
127 PRK15386 type III secretion pr 97.6 9.7E-05 2.1E-09 80.2 6.7 134 742-918 44-188 (426)
128 PRK14971 DNA polymerase III su 97.6 0.00054 1.2E-08 80.4 13.2 148 181-337 17-217 (614)
129 PRK05707 DNA polymerase III su 97.6 0.00048 1E-08 74.4 11.9 128 206-342 21-203 (328)
130 PRK05563 DNA polymerase III su 97.5 0.00096 2.1E-08 77.7 14.2 148 181-337 16-215 (559)
131 PRK14965 DNA polymerase III su 97.5 0.00057 1.2E-08 80.0 12.3 153 181-342 16-221 (576)
132 COG3903 Predicted ATPase [Gene 97.5 4.5E-05 9.8E-10 81.2 2.7 192 206-407 13-258 (414)
133 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00042 9.2E-09 84.6 11.4 120 181-308 187-362 (852)
134 KOG4579 Leucine-rich repeat (L 97.5 1.5E-05 3.3E-10 70.8 -1.0 79 568-648 60-139 (177)
135 PRK10787 DNA-binding ATP-depen 97.5 0.0019 4.1E-08 78.0 15.9 130 179-309 320-506 (784)
136 TIGR02880 cbbX_cfxQ probable R 97.5 0.0012 2.6E-08 70.1 12.7 102 209-310 60-209 (284)
137 PF12799 LRR_4: Leucine Rich r 97.5 7.2E-05 1.6E-09 53.9 2.2 41 549-601 1-41 (44)
138 PF00004 AAA: ATPase family as 97.4 0.00026 5.7E-09 66.0 6.1 68 210-277 1-112 (132)
139 TIGR00362 DnaA chromosomal rep 97.4 0.0016 3.6E-08 73.5 13.6 125 207-337 136-305 (405)
140 PF13191 AAA_16: AAA ATPase do 97.4 0.00011 2.4E-09 73.2 3.3 51 182-234 1-51 (185)
141 KOG0531 Protein phosphatase 1, 97.4 2.7E-05 5.8E-10 88.3 -1.4 109 545-669 91-200 (414)
142 PRK14086 dnaA chromosomal repl 97.4 0.0015 3.3E-08 75.1 12.6 122 207-334 314-480 (617)
143 KOG3665 ZYG-1-like serine/thre 97.4 8.8E-05 1.9E-09 87.7 2.8 129 495-642 121-261 (699)
144 PRK14087 dnaA chromosomal repl 97.3 0.00085 1.8E-08 76.0 10.1 133 207-343 141-320 (450)
145 TIGR02639 ClpA ATP-dependent C 97.3 0.00073 1.6E-08 82.0 10.3 121 181-309 182-358 (731)
146 KOG3665 ZYG-1-like serine/thre 97.3 0.00021 4.6E-09 84.6 5.3 133 518-666 121-261 (699)
147 COG1474 CDC6 Cdc6-related prot 97.3 0.0051 1.1E-07 67.4 15.5 161 182-343 18-239 (366)
148 PTZ00361 26 proteosome regulat 97.3 0.0006 1.3E-08 76.1 7.8 130 181-310 183-368 (438)
149 PRK12422 chromosomal replicati 97.3 0.00095 2.1E-08 75.3 9.5 103 207-311 141-286 (445)
150 TIGR00763 lon ATP-dependent pr 97.3 0.0047 1E-07 75.5 16.0 129 180-309 319-505 (775)
151 COG0466 Lon ATP-dependent Lon 97.2 0.0033 7.2E-08 71.6 12.9 129 179-309 321-508 (782)
152 CHL00095 clpC Clp protease ATP 97.2 0.0012 2.5E-08 81.2 10.3 119 181-307 179-352 (821)
153 KOG4579 Leucine-rich repeat (L 97.2 0.00013 2.9E-09 65.0 1.1 92 517-627 51-142 (177)
154 PTZ00454 26S protease regulato 97.2 0.0021 4.5E-08 71.4 10.7 129 181-309 145-329 (398)
155 COG0593 DnaA ATPase involved i 97.2 0.0071 1.5E-07 66.1 14.5 158 180-340 87-288 (408)
156 TIGR03689 pup_AAA proteasome A 97.2 0.0033 7.1E-08 71.4 12.4 130 181-310 182-379 (512)
157 PRK00149 dnaA chromosomal repl 97.2 0.0021 4.5E-08 73.6 11.1 150 206-361 147-348 (450)
158 PRK06871 DNA polymerase III su 97.2 0.0037 8E-08 67.1 12.0 136 190-339 11-200 (325)
159 PTZ00202 tuzin; Provisional 97.2 0.00078 1.7E-08 72.8 6.8 55 176-232 257-311 (550)
160 PF14516 AAA_35: AAA-like doma 97.1 0.014 3E-07 63.8 16.4 157 179-349 9-246 (331)
161 KOG2982 Uncharacterized conser 97.1 0.00047 1E-08 69.6 4.2 68 711-791 198-267 (418)
162 KOG0991 Replication factor C, 97.1 0.0045 9.8E-08 60.5 10.6 45 181-230 27-71 (333)
163 PRK14088 dnaA chromosomal repl 97.1 0.0027 5.8E-08 71.9 10.3 123 207-335 130-298 (440)
164 COG1222 RPT1 ATP-dependent 26S 97.0 0.0034 7.3E-08 65.7 9.8 161 181-346 151-371 (406)
165 CHL00176 ftsH cell division pr 97.0 0.0045 9.8E-08 72.8 12.2 149 181-334 183-386 (638)
166 PRK08769 DNA polymerase III su 97.0 0.0036 7.9E-08 67.0 10.4 138 190-342 13-208 (319)
167 PRK10536 hypothetical protein; 97.0 0.0054 1.2E-07 62.6 11.0 42 181-229 55-96 (262)
168 PF13177 DNA_pol3_delta2: DNA 97.0 0.0019 4.2E-08 62.3 7.3 108 185-297 1-162 (162)
169 KOG2004 Mitochondrial ATP-depe 97.0 0.0034 7.3E-08 71.2 9.9 57 179-235 409-466 (906)
170 PRK07399 DNA polymerase III su 97.0 0.0091 2E-07 64.2 13.1 148 181-341 4-220 (314)
171 PRK08058 DNA polymerase III su 96.9 0.0062 1.3E-07 66.4 11.4 121 182-307 6-180 (329)
172 KOG2543 Origin recognition com 96.9 0.021 4.5E-07 60.5 14.4 126 179-308 4-192 (438)
173 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0043 9.2E-08 76.6 10.8 121 181-308 173-348 (852)
174 PRK06526 transposase; Provisio 96.9 0.00094 2E-08 69.4 4.3 69 208-277 99-201 (254)
175 PF13401 AAA_22: AAA domain; P 96.9 0.001 2.2E-08 61.9 4.2 26 206-231 3-28 (131)
176 PRK07993 DNA polymerase III su 96.9 0.0083 1.8E-07 65.1 11.6 137 190-340 11-202 (334)
177 PRK11034 clpA ATP-dependent Cl 96.8 0.0028 6.1E-08 76.0 8.5 121 181-308 186-361 (758)
178 PRK06090 DNA polymerase III su 96.8 0.0088 1.9E-07 64.0 11.4 136 190-342 12-201 (319)
179 PRK10865 protein disaggregatio 96.8 0.0037 8.1E-08 76.7 9.6 46 181-231 178-223 (857)
180 PRK08181 transposase; Validate 96.8 0.001 2.2E-08 69.5 3.9 68 209-276 108-208 (269)
181 PF00910 RNA_helicase: RNA hel 96.8 0.0016 3.5E-08 57.9 4.5 41 210-250 1-62 (107)
182 TIGR00602 rad24 checkpoint pro 96.8 0.0081 1.7E-07 70.2 11.2 51 180-230 83-133 (637)
183 PF14532 Sigma54_activ_2: Sigm 96.8 0.0013 2.9E-08 61.7 3.9 90 184-276 1-109 (138)
184 KOG2227 Pre-initiation complex 96.7 0.0088 1.9E-07 64.8 10.4 168 179-347 148-377 (529)
185 TIGR01241 FtsH_fam ATP-depende 96.7 0.01 2.2E-07 68.8 11.8 150 181-335 55-259 (495)
186 PRK09183 transposase/IS protei 96.7 0.0015 3.4E-08 68.3 4.5 23 208-230 103-125 (259)
187 COG2607 Predicted ATPase (AAA+ 96.7 0.036 7.8E-07 54.9 12.9 85 179-264 58-167 (287)
188 TIGR02639 ClpA ATP-dependent C 96.7 0.0079 1.7E-07 73.1 10.6 84 180-263 453-579 (731)
189 PF01695 IstB_IS21: IstB-like 96.6 0.00077 1.7E-08 66.1 1.4 69 207-276 47-149 (178)
190 PRK08116 hypothetical protein; 96.6 0.0029 6.2E-08 66.6 5.6 69 208-276 115-220 (268)
191 COG1223 Predicted ATPase (AAA+ 96.6 0.0087 1.9E-07 59.6 8.4 131 180-310 120-298 (368)
192 COG1373 Predicted ATPase (AAA+ 96.6 0.015 3.3E-07 64.9 11.5 93 209-305 39-163 (398)
193 PRK11331 5-methylcytosine-spec 96.6 0.006 1.3E-07 67.4 7.8 44 181-231 175-218 (459)
194 PF02562 PhoH: PhoH-like prote 96.6 0.0038 8.2E-08 61.9 5.7 38 185-229 4-41 (205)
195 smart00763 AAA_PrkA PrkA AAA d 96.6 0.002 4.4E-08 69.1 4.1 65 182-246 52-121 (361)
196 PRK12377 putative replication 96.5 0.004 8.7E-08 64.2 5.8 70 207-276 101-205 (248)
197 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0053 1.1E-07 75.2 7.8 97 180-276 565-718 (852)
198 PF07728 AAA_5: AAA domain (dy 96.5 0.0018 3.9E-08 61.0 3.0 52 210-261 2-89 (139)
199 KOG1859 Leucine-rich repeat pr 96.5 0.00032 6.9E-09 79.1 -2.5 124 495-642 163-290 (1096)
200 PRK08939 primosomal protein Dn 96.5 0.0043 9.2E-08 66.4 6.1 91 185-276 135-260 (306)
201 PRK10865 protein disaggregatio 96.5 0.012 2.5E-07 72.5 10.7 97 180-276 567-720 (857)
202 COG2812 DnaX DNA polymerase II 96.5 0.0062 1.3E-07 68.7 7.6 145 181-334 16-212 (515)
203 TIGR02640 gas_vesic_GvpN gas v 96.5 0.024 5.1E-07 59.7 11.4 22 209-230 23-44 (262)
204 TIGR02902 spore_lonB ATP-depen 96.5 0.014 3.1E-07 67.8 10.6 44 181-229 65-108 (531)
205 PRK11034 clpA ATP-dependent Cl 96.5 0.013 2.7E-07 70.5 10.3 95 181-275 458-606 (758)
206 KOG2982 Uncharacterized conser 96.4 0.00053 1.2E-08 69.3 -1.1 63 706-783 91-156 (418)
207 CHL00195 ycf46 Ycf46; Provisio 96.4 0.012 2.6E-07 67.0 9.6 131 181-311 228-407 (489)
208 TIGR03346 chaperone_ClpB ATP-d 96.4 0.014 3.1E-07 72.1 10.8 97 180-276 564-717 (852)
209 KOG0741 AAA+-type ATPase [Post 96.4 0.029 6.3E-07 61.6 11.3 121 205-332 536-704 (744)
210 PRK07952 DNA replication prote 96.3 0.011 2.3E-07 61.0 7.7 70 207-276 99-204 (244)
211 PF00158 Sigma54_activat: Sigm 96.3 0.0038 8.3E-08 60.4 4.3 46 183-231 1-46 (168)
212 PRK06696 uridine kinase; Valid 96.3 0.0057 1.2E-07 62.8 5.7 62 185-248 2-63 (223)
213 PF13207 AAA_17: AAA domain; P 96.3 0.0026 5.5E-08 58.3 2.9 33 209-246 1-33 (121)
214 COG1618 Predicted nucleotide k 96.3 0.0034 7.4E-08 58.0 3.5 28 207-234 5-32 (179)
215 PRK09376 rho transcription ter 96.3 0.0029 6.3E-08 68.2 3.4 39 207-245 169-209 (416)
216 cd01128 rho_factor Transcripti 96.3 0.0041 9E-08 64.2 4.2 39 207-245 16-56 (249)
217 COG0572 Udk Uridine kinase [Nu 96.3 0.0049 1.1E-07 61.0 4.5 104 205-313 6-136 (218)
218 KOG1514 Origin recognition com 96.2 0.045 9.7E-07 62.6 11.9 163 180-346 395-625 (767)
219 PHA02244 ATPase-like protein 96.2 0.011 2.5E-07 63.5 7.0 68 209-276 121-230 (383)
220 PF10443 RNA12: RNA12 protein; 96.2 0.14 3.1E-06 56.0 15.3 116 237-353 148-289 (431)
221 TIGR01243 CDC48 AAA family ATP 96.1 0.027 5.9E-07 68.7 11.2 129 181-309 453-635 (733)
222 KOG2739 Leucine-rich acidic nu 96.1 0.003 6.5E-08 63.4 2.3 85 580-666 61-154 (260)
223 PRK06921 hypothetical protein; 96.1 0.0056 1.2E-07 64.3 4.5 26 207-232 117-142 (266)
224 COG0542 clpA ATP-binding subun 96.1 0.011 2.3E-07 69.7 7.1 96 180-275 490-642 (786)
225 TIGR02974 phageshock_pspF psp 95.9 0.023 5E-07 61.8 8.4 45 183-230 1-45 (329)
226 PF13604 AAA_30: AAA domain; P 95.9 0.014 2.9E-07 58.5 6.0 68 207-276 18-130 (196)
227 PRK07667 uridine kinase; Provi 95.9 0.013 2.9E-07 58.4 5.9 54 190-246 3-56 (193)
228 CHL00095 clpC Clp protease ATP 95.9 0.018 3.9E-07 71.0 8.0 97 180-276 508-661 (821)
229 PRK11608 pspF phage shock prot 95.9 0.036 7.7E-07 60.4 9.4 47 181-230 6-52 (326)
230 PRK06835 DNA replication prote 95.8 0.0084 1.8E-07 64.7 4.3 69 208-276 184-288 (329)
231 COG3267 ExeA Type II secretory 95.8 0.083 1.8E-06 53.2 10.8 136 206-343 50-246 (269)
232 PRK06964 DNA polymerase III su 95.8 0.072 1.6E-06 57.7 11.3 93 237-342 132-225 (342)
233 PRK08118 topology modulation p 95.8 0.0058 1.3E-07 59.3 2.7 26 208-233 2-27 (167)
234 TIGR01650 PD_CobS cobaltochela 95.8 0.29 6.2E-06 52.3 15.3 42 182-230 46-87 (327)
235 KOG0730 AAA+-type ATPase [Post 95.8 0.065 1.4E-06 60.9 10.9 146 180-326 433-631 (693)
236 PRK08699 DNA polymerase III su 95.7 0.025 5.5E-07 61.1 7.5 68 240-308 116-184 (325)
237 TIGR01243 CDC48 AAA family ATP 95.7 0.055 1.2E-06 66.1 11.2 151 181-336 178-381 (733)
238 COG5238 RNA1 Ran GTPase-activa 95.7 0.0034 7.3E-08 62.8 0.6 198 545-806 26-253 (388)
239 PRK09270 nucleoside triphospha 95.7 0.016 3.5E-07 59.7 5.6 42 205-246 31-73 (229)
240 COG1484 DnaC DNA replication p 95.6 0.008 1.7E-07 62.6 3.1 49 207-255 105-185 (254)
241 PRK04132 replication factor C 95.6 0.068 1.5E-06 64.5 11.2 119 215-338 574-727 (846)
242 PF00485 PRK: Phosphoribulokin 95.6 0.011 2.4E-07 59.1 4.0 38 209-246 1-42 (194)
243 COG1875 NYN ribonuclease and A 95.6 0.031 6.8E-07 58.8 7.2 38 184-226 227-264 (436)
244 KOG2739 Leucine-rich acidic nu 95.6 0.0072 1.6E-07 60.7 2.4 84 582-667 41-128 (260)
245 TIGR01817 nifA Nif-specific re 95.6 0.051 1.1E-06 63.8 9.8 49 179-230 194-242 (534)
246 KOG0733 Nuclear AAA ATPase (VC 95.5 0.02 4.3E-07 64.0 5.8 69 180-248 189-293 (802)
247 PLN00020 ribulose bisphosphate 95.5 0.013 2.9E-07 62.5 4.1 30 205-234 146-175 (413)
248 KOG0733 Nuclear AAA ATPase (VC 95.5 0.047 1E-06 61.2 8.4 127 207-335 545-717 (802)
249 COG0470 HolB ATPase involved i 95.4 0.045 9.8E-07 60.0 8.4 115 182-300 2-172 (325)
250 PF03215 Rad17: Rad17 cell cyc 95.4 0.078 1.7E-06 60.9 10.4 49 182-230 20-68 (519)
251 KOG1532 GTPase XAB1, interacts 95.4 0.012 2.6E-07 59.0 3.2 42 205-246 17-58 (366)
252 PF00560 LRR_1: Leucine Rich R 95.4 0.0051 1.1E-07 36.8 0.4 18 586-603 2-19 (22)
253 KOG1947 Leucine rich repeat pr 95.4 0.0019 4.1E-08 75.3 -2.9 34 583-616 187-223 (482)
254 KOG0731 AAA+-type ATPase conta 95.4 0.11 2.4E-06 61.0 11.3 154 181-338 311-520 (774)
255 PRK07261 topology modulation p 95.3 0.011 2.4E-07 57.7 2.8 23 209-231 2-24 (171)
256 KOG0729 26S proteasome regulat 95.3 0.043 9.3E-07 54.8 6.7 67 181-247 177-280 (435)
257 PRK13233 nifH nitrogenase redu 95.3 0.014 3.1E-07 62.1 3.7 35 208-242 3-37 (275)
258 cd02117 NifH_like This family 95.2 0.015 3.1E-07 59.3 3.3 34 208-242 1-34 (212)
259 PF04665 Pox_A32: Poxvirus A32 95.2 0.021 4.5E-07 58.1 4.3 25 207-231 13-37 (241)
260 PF13238 AAA_18: AAA domain; P 95.2 0.013 2.8E-07 54.2 2.6 22 210-231 1-22 (129)
261 KOG0734 AAA+-type ATPase conta 95.2 0.039 8.5E-07 60.7 6.4 68 181-248 304-407 (752)
262 PRK11889 flhF flagellar biosyn 95.2 0.057 1.2E-06 58.6 7.6 51 206-259 240-290 (436)
263 PRK15455 PrkA family serine pr 95.1 0.016 3.5E-07 65.5 3.6 51 182-232 77-128 (644)
264 PRK13236 nitrogenase reductase 95.1 0.02 4.3E-07 61.5 4.1 37 205-242 4-40 (296)
265 PRK13230 nitrogenase reductase 95.1 0.02 4.2E-07 61.2 3.9 34 208-242 2-35 (279)
266 PF00448 SRP54: SRP54-type pro 95.1 0.021 4.5E-07 56.9 3.8 39 208-246 2-40 (196)
267 KOG2123 Uncharacterized conser 95.1 0.0014 3.1E-08 65.6 -4.3 92 568-662 26-124 (388)
268 TIGR01287 nifH nitrogenase iro 95.0 0.017 3.6E-07 61.6 3.3 34 208-242 1-34 (275)
269 COG3640 CooC CO dehydrogenase 95.0 0.023 4.9E-07 56.3 3.8 35 209-244 2-36 (255)
270 KOG1644 U2-associated snRNP A' 95.0 0.015 3.2E-07 56.0 2.5 56 584-641 42-98 (233)
271 KOG0742 AAA+-type ATPase [Post 95.0 0.068 1.5E-06 56.9 7.4 104 205-308 382-527 (630)
272 PTZ00301 uridine kinase; Provi 95.0 0.023 5E-07 57.2 3.8 40 207-246 3-44 (210)
273 PRK10923 glnG nitrogen regulat 94.9 0.2 4.3E-06 58.1 12.1 48 181-231 138-185 (469)
274 PF07724 AAA_2: AAA domain (Cd 94.9 0.02 4.3E-07 55.7 3.2 57 207-263 3-105 (171)
275 cd01133 F1-ATPase_beta F1 ATP 94.9 0.022 4.8E-07 59.1 3.7 28 207-234 69-96 (274)
276 COG0542 clpA ATP-binding subun 94.9 0.097 2.1E-06 61.9 9.2 120 181-307 170-344 (786)
277 TIGR02782 TrbB_P P-type conjug 94.9 0.41 8.8E-06 51.3 13.3 90 208-311 133-228 (299)
278 KOG0727 26S proteasome regulat 94.8 0.061 1.3E-06 53.3 6.2 55 181-235 155-217 (408)
279 KOG0744 AAA+-type ATPase [Post 94.8 0.025 5.5E-07 58.3 3.7 29 207-235 177-205 (423)
280 TIGR00767 rho transcription te 94.8 0.026 5.6E-07 61.5 4.0 39 207-245 168-208 (415)
281 cd02028 UMPK_like Uridine mono 94.8 0.022 4.7E-07 56.1 3.1 39 209-247 1-39 (179)
282 PF12775 AAA_7: P-loop contain 94.8 0.066 1.4E-06 56.4 6.8 59 190-254 22-117 (272)
283 COG4618 ArpD ABC-type protease 94.7 0.058 1.3E-06 59.4 6.4 23 208-230 363-385 (580)
284 cd02025 PanK Pantothenate kina 94.7 0.025 5.4E-07 57.6 3.5 38 209-246 1-40 (220)
285 PF05659 RPW8: Arabidopsis bro 94.7 0.29 6.4E-06 45.8 10.2 84 2-85 3-86 (147)
286 PF03266 NTPase_1: NTPase; In 94.7 0.048 1E-06 52.8 5.2 23 210-232 2-24 (168)
287 cd02019 NK Nucleoside/nucleoti 94.7 0.021 4.6E-07 46.0 2.3 23 209-231 1-23 (69)
288 PRK13695 putative NTPase; Prov 94.7 0.079 1.7E-06 52.0 6.8 22 209-230 2-23 (174)
289 KOG0739 AAA+-type ATPase [Post 94.7 1 2.2E-05 46.3 14.4 68 181-248 133-236 (439)
290 PRK05480 uridine/cytidine kina 94.7 0.026 5.7E-07 57.3 3.4 26 206-231 5-30 (209)
291 KOG1644 U2-associated snRNP A' 94.7 0.029 6.2E-07 54.1 3.3 72 568-640 71-149 (233)
292 TIGR00235 udk uridine kinase. 94.6 0.028 6.1E-07 56.9 3.6 27 206-232 5-31 (207)
293 PRK08233 hypothetical protein; 94.6 0.026 5.7E-07 55.9 3.2 36 207-246 3-38 (182)
294 PRK15429 formate hydrogenlyase 94.6 0.055 1.2E-06 65.6 6.5 93 181-276 376-520 (686)
295 PRK13232 nifH nitrogenase redu 94.5 0.027 5.8E-07 60.0 3.3 34 208-242 2-35 (273)
296 TIGR01281 DPOR_bchL light-inde 94.5 0.03 6.6E-07 59.4 3.7 33 209-242 2-34 (268)
297 COG0003 ArsA Predicted ATPase 94.5 0.032 7E-07 59.6 3.7 39 207-246 2-41 (322)
298 PRK13185 chlL protochlorophyll 94.5 0.033 7.2E-07 59.1 3.9 34 208-242 3-36 (270)
299 KOG1969 DNA replication checkp 94.4 0.041 8.9E-07 63.0 4.4 57 205-261 324-411 (877)
300 PRK13235 nifH nitrogenase redu 94.4 0.032 6.8E-07 59.4 3.4 34 208-242 2-35 (274)
301 PF05621 TniB: Bacterial TniB 94.4 0.17 3.6E-06 53.0 8.4 49 181-231 34-85 (302)
302 PLN02796 D-glycerate 3-kinase 94.4 0.047 1E-06 58.5 4.6 42 206-247 99-140 (347)
303 PF00560 LRR_1: Leucine Rich R 94.3 0.021 4.5E-07 34.1 1.1 21 608-629 1-21 (22)
304 PF13671 AAA_33: AAA domain; P 94.3 0.034 7.4E-07 52.5 3.2 24 209-232 1-24 (143)
305 PF01583 APS_kinase: Adenylyls 94.3 0.041 9E-07 52.0 3.6 39 208-246 3-41 (156)
306 PRK13531 regulatory ATPase Rav 94.3 0.043 9.4E-07 61.4 4.3 119 181-308 20-193 (498)
307 cd02023 UMPK Uridine monophosp 94.3 0.042 9.1E-07 55.2 3.9 37 209-247 1-37 (198)
308 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.13 2.9E-06 48.5 7.1 73 208-282 27-132 (144)
309 COG2884 FtsE Predicted ATPase 94.3 0.12 2.5E-06 49.7 6.3 26 207-232 28-53 (223)
310 cd02040 NifH NifH gene encodes 94.3 0.038 8.3E-07 58.7 3.7 34 208-242 2-35 (270)
311 PRK05022 anaerobic nitric oxid 94.2 0.085 1.9E-06 61.4 6.8 94 180-276 186-331 (509)
312 TIGR00064 ftsY signal recognit 94.2 0.078 1.7E-06 55.9 5.9 36 206-242 71-106 (272)
313 cd03216 ABC_Carb_Monos_I This 94.2 0.11 2.3E-06 50.4 6.4 23 208-230 27-49 (163)
314 PRK06762 hypothetical protein; 94.2 0.034 7.3E-07 54.1 2.9 24 208-231 3-26 (166)
315 KOG0735 AAA+-type ATPase [Post 94.2 0.17 3.8E-06 57.9 8.6 131 207-341 431-615 (952)
316 PLN02348 phosphoribulokinase 94.2 0.07 1.5E-06 58.1 5.4 29 205-233 47-75 (395)
317 PRK06547 hypothetical protein; 94.2 0.04 8.6E-07 53.6 3.3 38 205-247 13-50 (172)
318 PRK03839 putative kinase; Prov 94.1 0.033 7.1E-07 55.0 2.7 25 209-233 2-26 (180)
319 KOG2035 Replication factor C, 94.1 0.33 7.2E-06 49.3 9.5 171 183-363 15-259 (351)
320 KOG2123 Uncharacterized conser 94.1 0.0096 2.1E-07 59.9 -1.1 99 518-637 18-123 (388)
321 KOG1947 Leucine rich repeat pr 94.1 0.015 3.2E-07 67.8 0.1 180 518-723 187-373 (482)
322 PF13245 AAA_19: Part of AAA d 94.1 0.058 1.3E-06 44.3 3.6 21 208-228 11-31 (76)
323 TIGR03018 pepcterm_TyrKin exop 94.1 0.09 1.9E-06 53.2 5.8 57 186-242 11-71 (207)
324 PF03029 ATP_bind_1: Conserved 94.0 0.041 8.8E-07 56.7 3.2 35 212-246 1-35 (238)
325 KOG0728 26S proteasome regulat 94.0 0.2 4.4E-06 49.7 7.7 127 182-308 147-330 (404)
326 PF03308 ArgK: ArgK protein; 94.0 0.11 2.3E-06 52.9 6.0 53 189-244 14-66 (266)
327 PRK10733 hflB ATP-dependent me 94.0 0.16 3.4E-06 60.8 8.4 130 181-310 152-336 (644)
328 cd03222 ABC_RNaseL_inhibitor T 93.9 0.11 2.4E-06 50.7 5.9 24 208-231 26-49 (177)
329 TIGR00554 panK_bact pantothena 93.9 0.099 2.1E-06 55.3 5.9 27 205-231 60-86 (290)
330 COG0194 Gmk Guanylate kinase [ 93.9 0.073 1.6E-06 51.1 4.4 24 208-231 5-28 (191)
331 smart00382 AAA ATPases associa 93.9 0.041 9E-07 51.5 2.8 27 208-234 3-29 (148)
332 COG0464 SpoVK ATPases of the A 93.9 0.35 7.7E-06 56.3 11.0 106 205-310 274-424 (494)
333 PF02374 ArsA_ATPase: Anion-tr 93.9 0.043 9.3E-07 58.9 3.1 34 208-242 2-35 (305)
334 COG1428 Deoxynucleoside kinase 93.9 0.041 8.8E-07 53.9 2.6 27 207-233 4-30 (216)
335 TIGR02329 propionate_PrpR prop 93.8 0.23 4.9E-06 57.5 9.2 47 181-230 212-258 (526)
336 PF08433 KTI12: Chromatin asso 93.8 0.045 9.8E-07 57.4 3.1 26 208-233 2-27 (270)
337 PRK04040 adenylate kinase; Pro 93.8 0.047 1E-06 54.1 3.0 24 208-231 3-26 (188)
338 PRK00625 shikimate kinase; Pro 93.8 0.041 8.8E-07 53.6 2.6 24 209-232 2-25 (173)
339 PHA00729 NTP-binding motif con 93.8 0.053 1.1E-06 54.5 3.4 26 206-231 16-41 (226)
340 PRK12608 transcription termina 93.7 0.058 1.3E-06 58.4 3.8 41 189-233 119-159 (380)
341 COG5238 RNA1 Ran GTPase-activa 93.7 0.038 8.3E-07 55.6 2.3 97 516-623 27-135 (388)
342 TIGR02016 BchX chlorophyllide 93.7 0.052 1.1E-06 58.1 3.5 34 208-242 1-34 (296)
343 PRK13234 nifH nitrogenase redu 93.7 0.062 1.3E-06 57.7 4.1 36 206-242 3-38 (295)
344 PLN03046 D-glycerate 3-kinase; 93.7 0.093 2E-06 57.3 5.3 42 206-247 211-252 (460)
345 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.17 3.7E-06 51.3 7.0 78 207-284 29-161 (213)
346 TIGR03499 FlhF flagellar biosy 93.7 0.061 1.3E-06 57.2 3.9 37 206-242 193-230 (282)
347 TIGR01360 aden_kin_iso1 adenyl 93.7 0.048 1E-06 54.3 2.9 26 206-231 2-27 (188)
348 PRK05541 adenylylsulfate kinas 93.6 0.055 1.2E-06 53.2 3.2 30 206-235 6-35 (176)
349 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.13 2.9E-06 52.5 5.9 22 208-229 31-52 (254)
350 PRK10416 signal recognition pa 93.6 0.074 1.6E-06 57.3 4.3 36 206-242 113-148 (318)
351 KOG2228 Origin recognition com 93.6 0.24 5.2E-06 51.9 7.7 49 181-230 24-72 (408)
352 PRK09435 membrane ATPase/prote 93.6 0.15 3.3E-06 55.0 6.6 53 191-246 43-95 (332)
353 cd02032 Bchl_like This family 93.5 0.06 1.3E-06 57.0 3.5 33 209-242 2-34 (267)
354 PRK05439 pantothenate kinase; 93.5 0.13 2.7E-06 54.9 5.8 43 205-247 84-128 (311)
355 PRK07132 DNA polymerase III su 93.5 0.83 1.8E-05 48.7 12.0 95 236-341 89-184 (299)
356 COG1703 ArgK Putative periplas 93.5 0.11 2.4E-06 53.5 5.1 53 191-246 38-90 (323)
357 cd01130 VirB11-like_ATPase Typ 93.5 2.4 5.1E-05 42.0 14.7 37 208-247 26-62 (186)
358 cd02024 NRK1 Nicotinamide ribo 93.5 0.044 9.6E-07 53.9 2.2 36 209-248 1-36 (187)
359 PF12061 DUF3542: Protein of u 93.5 0.16 3.4E-06 52.2 6.0 75 6-85 298-373 (402)
360 COG4088 Predicted nucleotide k 93.4 0.12 2.7E-06 50.0 4.9 26 208-233 2-27 (261)
361 cd03214 ABC_Iron-Siderophores_ 93.4 0.14 3E-06 50.6 5.6 23 208-230 26-48 (180)
362 cd02034 CooC The accessory pro 93.4 0.074 1.6E-06 47.9 3.4 32 210-242 2-33 (116)
363 TIGR00150 HI0065_YjeE ATPase, 93.4 0.1 2.3E-06 47.9 4.3 42 188-232 6-47 (133)
364 cd01983 Fer4_NifH The Fer4_Nif 93.4 0.073 1.6E-06 46.1 3.3 36 209-246 1-36 (99)
365 cd03247 ABCC_cytochrome_bd The 93.3 0.18 4E-06 49.6 6.4 23 208-230 29-51 (178)
366 PRK15424 propionate catabolism 93.3 0.3 6.5E-06 56.5 9.0 47 181-230 219-265 (538)
367 KOG0743 AAA+-type ATPase [Post 93.3 0.58 1.2E-05 51.3 10.4 130 210-346 238-413 (457)
368 PRK10820 DNA-binding transcrip 93.3 0.13 2.9E-06 59.8 6.2 47 181-230 204-250 (520)
369 PRK13768 GTPase; Provisional 93.3 0.081 1.8E-06 55.3 4.0 36 208-244 3-39 (253)
370 cd00820 PEPCK_HprK Phosphoenol 93.3 0.057 1.2E-06 47.3 2.3 33 207-246 15-47 (107)
371 PF07726 AAA_3: ATPase family 93.3 0.038 8.3E-07 49.8 1.3 26 210-235 2-27 (131)
372 cd03114 ArgK-like The function 93.3 0.081 1.8E-06 50.1 3.6 34 209-243 1-34 (148)
373 cd03228 ABCC_MRP_Like The MRP 93.2 0.21 4.5E-06 48.8 6.5 23 208-230 29-51 (171)
374 COG1936 Predicted nucleotide k 93.2 0.091 2E-06 49.7 3.6 20 209-228 2-21 (180)
375 PRK12724 flagellar biosynthesi 93.2 0.081 1.7E-06 58.3 3.8 39 207-245 223-261 (432)
376 TIGR02322 phosphon_PhnN phosph 93.1 0.066 1.4E-06 52.8 2.9 24 208-231 2-25 (179)
377 KOG0651 26S proteasome regulat 93.1 0.085 1.8E-06 54.3 3.6 43 206-248 165-236 (388)
378 COG0714 MoxR-like ATPases [Gen 93.1 0.19 4.2E-06 55.0 6.8 45 181-232 24-68 (329)
379 PF03205 MobB: Molybdopterin g 93.1 0.12 2.6E-06 48.4 4.3 38 208-246 1-38 (140)
380 KOG0652 26S proteasome regulat 93.1 0.48 1E-05 47.5 8.5 53 181-233 171-231 (424)
381 cd00561 CobA_CobO_BtuR ATP:cor 93.0 0.24 5.3E-06 47.0 6.3 42 236-277 94-138 (159)
382 PF00006 ATP-synt_ab: ATP synt 93.0 0.089 1.9E-06 53.0 3.6 25 208-232 16-40 (215)
383 TIGR01359 UMP_CMP_kin_fam UMP- 93.0 0.058 1.3E-06 53.4 2.3 24 209-232 1-24 (183)
384 PRK00131 aroK shikimate kinase 93.0 0.067 1.5E-06 52.4 2.7 26 207-232 4-29 (175)
385 PRK06217 hypothetical protein; 92.9 0.075 1.6E-06 52.6 3.0 24 209-232 3-26 (183)
386 PRK11388 DNA-binding transcrip 92.9 0.16 3.5E-06 61.2 6.2 80 181-263 325-442 (638)
387 PRK13231 nitrogenase reductase 92.9 0.12 2.6E-06 54.6 4.6 33 208-242 3-35 (264)
388 PRK13947 shikimate kinase; Pro 92.8 0.069 1.5E-06 52.2 2.5 25 209-233 3-27 (171)
389 TIGR03263 guanyl_kin guanylate 92.8 0.079 1.7E-06 52.3 3.0 24 208-231 2-25 (180)
390 PRK03846 adenylylsulfate kinas 92.8 0.11 2.3E-06 52.2 3.9 28 206-233 23-50 (198)
391 KOG0737 AAA+-type ATPase [Post 92.8 0.59 1.3E-05 49.8 9.3 151 181-336 92-296 (386)
392 cd02021 GntK Gluconate kinase 92.7 0.072 1.6E-06 50.8 2.4 23 209-231 1-23 (150)
393 cd00227 CPT Chloramphenicol (C 92.7 0.076 1.7E-06 52.1 2.7 24 208-231 3-26 (175)
394 PRK06995 flhF flagellar biosyn 92.7 0.16 3.5E-06 57.4 5.5 50 207-258 256-306 (484)
395 PLN02318 phosphoribulokinase/u 92.7 0.2 4.3E-06 57.3 6.1 38 205-246 63-100 (656)
396 CHL00072 chlL photochlorophyll 92.7 0.092 2E-06 56.1 3.4 32 210-242 3-34 (290)
397 cd03282 ABC_MSH4_euk MutS4 hom 92.7 0.32 6.9E-06 48.9 7.1 77 207-285 29-159 (204)
398 COG1124 DppF ABC-type dipeptid 92.7 0.09 1.9E-06 52.6 3.0 26 208-233 34-59 (252)
399 PRK13949 shikimate kinase; Pro 92.6 0.082 1.8E-06 51.4 2.7 24 209-232 3-26 (169)
400 TIGR02858 spore_III_AA stage I 92.6 0.47 1E-05 49.8 8.5 40 189-232 97-136 (270)
401 COG1102 Cmk Cytidylate kinase 92.6 0.079 1.7E-06 49.3 2.3 24 209-232 2-25 (179)
402 PRK00889 adenylylsulfate kinas 92.6 0.12 2.6E-06 50.8 3.8 27 207-233 4-30 (175)
403 PRK00771 signal recognition pa 92.6 0.18 3.9E-06 56.6 5.6 41 206-247 94-134 (437)
404 PRK10751 molybdopterin-guanine 92.5 0.11 2.4E-06 50.2 3.3 28 206-233 5-32 (173)
405 PF13479 AAA_24: AAA domain 92.5 0.13 2.9E-06 52.2 4.2 20 208-227 4-23 (213)
406 PRK10867 signal recognition pa 92.4 0.12 2.6E-06 57.9 4.0 42 206-247 99-140 (433)
407 PRK08972 fliI flagellum-specif 92.4 0.13 2.7E-06 57.2 4.0 24 208-231 163-186 (444)
408 KOG0473 Leucine-rich repeat pr 92.4 0.012 2.6E-07 57.7 -3.3 85 545-642 38-122 (326)
409 TIGR00176 mobB molybdopterin-g 92.4 0.11 2.5E-06 49.5 3.3 33 209-242 1-33 (155)
410 TIGR01425 SRP54_euk signal rec 92.4 0.12 2.7E-06 57.4 4.0 50 206-258 99-148 (429)
411 PRK05342 clpX ATP-dependent pr 92.3 0.17 3.7E-06 56.5 5.1 52 180-231 70-132 (412)
412 PF08298 AAA_PrkA: PrkA AAA do 92.3 0.16 3.6E-06 54.2 4.6 53 180-232 60-113 (358)
413 cd02020 CMPK Cytidine monophos 92.3 0.081 1.8E-06 50.1 2.2 23 209-231 1-23 (147)
414 cd03243 ABC_MutS_homologs The 92.3 0.25 5.3E-06 49.8 5.7 75 208-284 30-158 (202)
415 PRK05703 flhF flagellar biosyn 92.2 0.12 2.6E-06 58.2 3.7 35 208-242 222-257 (424)
416 KOG0924 mRNA splicing factor A 92.2 0.55 1.2E-05 53.4 8.6 34 190-230 361-395 (1042)
417 PRK08149 ATP synthase SpaL; Va 92.2 0.13 2.9E-06 57.1 3.9 25 207-231 151-175 (428)
418 COG2019 AdkA Archaeal adenylat 92.2 0.13 2.8E-06 48.1 3.2 25 207-231 4-28 (189)
419 cd00071 GMPK Guanosine monopho 92.2 0.098 2.1E-06 48.9 2.5 23 209-231 1-23 (137)
420 COG0563 Adk Adenylate kinase a 92.2 0.1 2.2E-06 51.0 2.7 23 209-231 2-24 (178)
421 PRK10078 ribose 1,5-bisphospho 92.1 0.11 2.4E-06 51.6 3.0 25 208-232 3-27 (186)
422 PF08477 Miro: Miro-like prote 92.1 0.11 2.4E-06 47.1 2.8 24 210-233 2-25 (119)
423 PRK15453 phosphoribulokinase; 92.1 0.17 3.7E-06 52.5 4.3 42 206-247 4-45 (290)
424 PRK14722 flhF flagellar biosyn 92.1 0.14 3E-06 56.1 3.8 40 207-246 137-177 (374)
425 PRK00300 gmk guanylate kinase; 92.1 0.1 2.2E-06 52.7 2.8 25 207-231 5-29 (205)
426 COG4133 CcmA ABC-type transpor 92.1 0.25 5.5E-06 47.4 5.0 22 208-229 29-50 (209)
427 PF00142 Fer4_NifH: 4Fe-4S iro 92.1 0.16 3.4E-06 51.9 3.9 34 208-242 1-34 (273)
428 TIGR01818 ntrC nitrogen regula 92.0 0.79 1.7E-05 53.0 10.3 47 181-230 134-180 (463)
429 KOG1970 Checkpoint RAD17-RFC c 91.9 0.32 7E-06 54.3 6.4 44 188-231 89-134 (634)
430 PRK13975 thymidylate kinase; P 91.9 0.12 2.6E-06 51.9 2.9 25 208-232 3-27 (196)
431 COG1348 NifH Nitrogenase subun 91.9 0.12 2.6E-06 50.9 2.8 34 208-242 2-35 (278)
432 cd01136 ATPase_flagellum-secre 91.9 0.17 3.7E-06 54.3 4.2 26 207-232 69-94 (326)
433 cd04121 Rab40 Rab40 subfamily. 91.8 0.78 1.7E-05 45.6 8.6 24 207-230 6-29 (189)
434 cd01131 PilT Pilus retraction 91.8 0.2 4.3E-06 50.2 4.5 38 209-246 3-40 (198)
435 KOG0927 Predicted transporter 91.8 0.29 6.2E-06 54.6 5.9 25 207-231 101-125 (614)
436 cd02042 ParA ParA and ParB of 91.8 0.15 3.2E-06 45.0 3.1 32 210-242 2-34 (104)
437 cd02029 PRK_like Phosphoribulo 91.8 0.15 3.2E-06 52.5 3.5 40 209-248 1-40 (277)
438 COG0465 HflB ATP-dependent Zn 91.8 1.2 2.7E-05 51.4 11.1 131 179-309 148-333 (596)
439 TIGR03522 GldA_ABC_ATP gliding 91.8 0.43 9.3E-06 51.5 7.2 23 208-230 29-51 (301)
440 PHA02774 E1; Provisional 91.8 0.32 6.9E-06 55.5 6.3 53 190-246 421-488 (613)
441 PRK08927 fliI flagellum-specif 91.8 0.17 3.8E-06 56.3 4.2 25 207-231 158-182 (442)
442 TIGR01313 therm_gnt_kin carboh 91.7 0.099 2.1E-06 50.6 2.1 22 210-231 1-22 (163)
443 cd01135 V_A-ATPase_B V/A-type 91.7 0.17 3.7E-06 52.5 3.9 26 207-232 69-94 (276)
444 PRK12339 2-phosphoglycerate ki 91.7 0.14 3E-06 51.0 3.2 25 207-231 3-27 (197)
445 PRK14737 gmk guanylate kinase; 91.7 0.16 3.5E-06 50.2 3.5 25 206-230 3-27 (186)
446 TIGR00750 lao LAO/AO transport 91.7 0.26 5.7E-06 53.0 5.4 35 205-240 32-66 (300)
447 PRK14530 adenylate kinase; Pro 91.7 0.11 2.5E-06 52.8 2.5 24 209-232 5-28 (215)
448 cd04162 Arl9_Arfrp2_like Arl9/ 91.6 0.26 5.7E-06 47.7 4.9 21 210-230 2-22 (164)
449 PF10662 PduV-EutP: Ethanolami 91.6 0.22 4.7E-06 46.2 4.0 39 208-246 2-40 (143)
450 cd03115 SRP The signal recogni 91.6 0.19 4E-06 49.3 3.9 33 209-242 2-34 (173)
451 cd00464 SK Shikimate kinase (S 91.6 0.13 2.7E-06 49.3 2.6 22 210-231 2-23 (154)
452 PRK05057 aroK shikimate kinase 91.6 0.12 2.6E-06 50.4 2.5 25 208-232 5-29 (172)
453 TIGR00959 ffh signal recogniti 91.5 0.19 4.1E-06 56.3 4.2 41 206-246 98-138 (428)
454 PRK14738 gmk guanylate kinase; 91.4 0.16 3.6E-06 51.2 3.4 25 206-230 12-36 (206)
455 PF00005 ABC_tran: ABC transpo 91.4 0.16 3.5E-06 47.4 3.1 26 208-233 12-37 (137)
456 PRK13946 shikimate kinase; Pro 91.4 0.13 2.8E-06 50.9 2.6 27 207-233 10-36 (184)
457 COG0396 sufC Cysteine desulfur 91.4 0.45 9.7E-06 47.3 6.1 25 207-231 30-54 (251)
458 cd04139 RalA_RalB RalA/RalB su 91.4 0.48 1E-05 45.6 6.6 23 209-231 2-24 (164)
459 PF03193 DUF258: Protein of un 91.3 0.24 5.3E-06 47.0 4.2 37 188-232 24-60 (161)
460 PRK06002 fliI flagellum-specif 91.3 0.2 4.3E-06 56.0 4.0 25 207-231 165-189 (450)
461 KOG0736 Peroxisome assembly fa 91.3 0.39 8.5E-06 55.7 6.3 77 172-248 663-775 (953)
462 COG0703 AroK Shikimate kinase 91.3 0.15 3.2E-06 48.8 2.6 27 209-235 4-30 (172)
463 PRK13948 shikimate kinase; Pro 91.3 0.15 3.3E-06 50.0 2.8 27 206-232 9-35 (182)
464 PRK05201 hslU ATP-dependent pr 91.2 0.26 5.5E-06 54.3 4.7 53 180-232 14-75 (443)
465 COG1100 GTPase SAR1 and relate 91.1 0.15 3.3E-06 52.1 2.8 27 208-234 6-32 (219)
466 PF06309 Torsin: Torsin; Inte 91.1 0.37 8.1E-06 43.4 4.8 47 182-230 26-76 (127)
467 PF01078 Mg_chelatase: Magnesi 91.1 0.32 6.9E-06 48.2 4.8 43 181-230 3-45 (206)
468 cd03225 ABC_cobalt_CbiO_domain 91.0 0.26 5.6E-06 50.1 4.4 27 208-234 28-54 (211)
469 cd02026 PRK Phosphoribulokinas 91.0 0.2 4.4E-06 52.8 3.7 36 209-246 1-36 (273)
470 cd02027 APSK Adenosine 5'-phos 91.0 0.16 3.4E-06 48.4 2.5 24 209-232 1-24 (149)
471 PRK13851 type IV secretion sys 91.0 1.2 2.6E-05 48.5 9.6 89 207-311 162-260 (344)
472 PRK07594 type III secretion sy 90.9 0.2 4.2E-06 55.9 3.6 25 207-231 155-179 (433)
473 COG4240 Predicted kinase [Gene 90.9 0.27 5.9E-06 48.3 4.1 45 205-249 48-93 (300)
474 PF13504 LRR_7: Leucine rich r 90.9 0.092 2E-06 29.0 0.5 16 608-624 2-17 (17)
475 PF13504 LRR_7: Leucine rich r 90.9 0.16 3.5E-06 28.1 1.5 16 585-600 2-17 (17)
476 PRK15115 response regulator Gl 90.9 0.44 9.5E-06 54.8 6.6 92 182-276 135-278 (444)
477 PRK14493 putative bifunctional 90.8 0.21 4.5E-06 52.5 3.5 28 208-235 2-29 (274)
478 PRK05922 type III secretion sy 90.8 0.24 5.3E-06 55.1 4.2 24 208-231 158-181 (434)
479 TIGR00073 hypB hydrogenase acc 90.8 0.18 4E-06 50.9 3.1 37 205-243 20-56 (207)
480 PF01656 CbiA: CobQ/CobB/MinD/ 90.8 0.22 4.7E-06 49.8 3.6 32 210-242 2-33 (195)
481 TIGR02788 VirB11 P-type DNA tr 90.8 2.4 5.3E-05 45.7 11.8 39 207-248 144-182 (308)
482 PRK06936 type III secretion sy 90.7 0.24 5.2E-06 55.2 4.1 26 207-232 162-187 (439)
483 PF13521 AAA_28: AAA domain; P 90.7 0.15 3.3E-06 49.3 2.3 21 210-230 2-22 (163)
484 cd03297 ABC_ModC_molybdenum_tr 90.7 0.31 6.7E-06 49.7 4.6 29 206-235 23-51 (214)
485 cd04159 Arl10_like Arl10-like 90.7 0.28 6E-06 46.8 4.1 21 210-230 2-22 (159)
486 PRK05917 DNA polymerase III su 90.7 1.6 3.4E-05 46.1 9.9 102 190-296 6-154 (290)
487 PRK04182 cytidylate kinase; Pr 90.7 0.18 4E-06 49.6 2.9 24 209-232 2-25 (180)
488 PF03969 AFG1_ATPase: AFG1-lik 90.6 0.35 7.7E-06 53.0 5.2 28 206-233 61-88 (362)
489 PLN02200 adenylate kinase fami 90.6 0.2 4.4E-06 51.5 3.2 26 206-231 42-67 (234)
490 COG1763 MobB Molybdopterin-gua 90.6 0.17 3.8E-06 48.0 2.5 29 207-235 2-30 (161)
491 COG0237 CoaE Dephospho-CoA kin 90.6 0.19 4.1E-06 50.0 2.8 22 208-229 3-24 (201)
492 cd01124 KaiC KaiC is a circadi 90.6 0.2 4.3E-06 49.7 3.1 23 210-232 2-24 (187)
493 TIGR03496 FliI_clade1 flagella 90.6 0.27 5.9E-06 54.7 4.4 26 207-232 137-162 (411)
494 TIGR03574 selen_PSTK L-seryl-t 90.6 0.16 3.6E-06 53.0 2.5 25 209-233 1-25 (249)
495 PRK12726 flagellar biosynthesi 90.5 0.26 5.7E-06 53.5 4.0 36 206-242 205-240 (407)
496 PRK13894 conjugal transfer ATP 90.5 1.9 4.2E-05 46.5 10.6 89 208-310 149-242 (319)
497 cd01132 F1_ATPase_alpha F1 ATP 90.5 0.24 5.1E-06 51.5 3.5 24 207-230 69-93 (274)
498 PRK09825 idnK D-gluconate kina 90.5 0.2 4.2E-06 49.1 2.8 25 208-232 4-28 (176)
499 smart00534 MUTSac ATPase domai 90.5 0.51 1.1E-05 46.7 5.8 75 209-284 1-129 (185)
500 TIGR02768 TraA_Ti Ti-type conj 90.5 0.45 9.7E-06 57.9 6.4 66 208-275 369-475 (744)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-80 Score=729.61 Aligned_cols=715 Identities=26% Similarity=0.399 Sum_probs=521.9
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHH
Q 002265 3 HAIVSFLLDQLKSIPQDQVKEKWRLVTGVEQEVEKLTKNLRAIQAVLEDAEQRQMKQDKVVTLWLDQLRDASYDMEDVLD 82 (945)
Q Consensus 3 ~~~v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~ld 82 (945)
++.++..++++.+ .+.+++....+.++.+..|++++..+++++++|++++.. ...+..|.+.+++++|++||+++
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777 899999999999999999999999999999999998877 77889999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCchhhhhhhccccccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhcccCcceeec
Q 002265 83 EWITETRKLQLDEGRDDDDANAFVTLLTKVCYFFPAASNCFGGFKQLSLRHDIAVKIREISEKLDEIAARKDRFNFVENV 162 (945)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ki~~~~~~~~~~~~~~~~~~~~~~~ 162 (945)
.|.......+.... ........++ .. .| .++++.+..+..+.+++.++......+......
T Consensus 77 ~~~v~~~~~~~~~~--------l~~~~~~~~~-~c---~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~ 137 (889)
T KOG4658|consen 77 LFLVEEIERKANDL--------LSTRSVERQR-LC---LC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVF 137 (889)
T ss_pred HHHHHHHHHHHhHH--------hhhhHHHHHH-Hh---hh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccce
Confidence 99988876543221 0000000111 10 01 234444545555555555554444444322211
Q ss_pred --ccC-CCCCCCCCccccccCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc-ccC---
Q 002265 163 --INS-VKKPERERTISLIDEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE-VNS--- 235 (945)
Q Consensus 163 --~~~-~~~~~~~~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~-~~~--- 235 (945)
... ......+.+.+...... ||.+..++++.+.|..++ ..++||+||||+||||||++++|+.. +..
T Consensus 138 ~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~-----~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 138 EVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD-----VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred ecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC-----CCEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 011 11112233344444444 999999999999998753 38999999999999999999999986 332
Q ss_pred ------------------------------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCC
Q 002265 236 ------------------------------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHG 267 (945)
Q Consensus 236 ------------------------------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~g 267 (945)
++||+|||||||+.. +|+.+..++|....|
T Consensus 212 ~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g 289 (889)
T KOG4658|consen 212 GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENG 289 (889)
T ss_pred eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCC
Confidence 899999999999974 699999999999899
Q ss_pred cEEEEEcCchHHHHH-hcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002265 268 GKILVTTRNVSVARM-MGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLL 346 (945)
Q Consensus 268 s~iiiTtr~~~~~~~-~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 346 (945)
|||++|||++.|+.. +++.. .++++.|+.+|||+||++.||.... ...+.+.++|++|+++|+|+|||+.++|+.|
T Consensus 290 ~KvvlTTRs~~V~~~~m~~~~--~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 290 SKVVLTTRSEEVCGRAMGVDY--PIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred eEEEEEeccHhhhhccccCCc--cccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 999999999999998 77644 8999999999999999999986633 2334489999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhhcccc----cccCccchhHHHhhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhcccc
Q 002265 347 RSKSTVEEWESILESEMWEV----EEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLN 422 (945)
Q Consensus 347 ~~~~~~~~w~~~l~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~ 422 (945)
+.+.++.+|+++.+...+.. ....+.++.+|++|||.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.
T Consensus 367 a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~ 444 (889)
T KOG4658|consen 367 ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFID 444 (889)
T ss_pred cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcC
Confidence 99999999999998765542 22346799999999999996 9999999999999999999999999999999998
Q ss_pred c-cccccHHHHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHHHHHhhc-----ccceEeecC-CCccccccCCC
Q 002265 423 A-KANKEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSR-----KECLWLEID-DNKESIIKPSG 495 (945)
Q Consensus 423 ~-~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~~i~~-----~~~~~~~~~-~~~~~~~~~~~ 495 (945)
. ..+..+++.|+.|+.+|+.++|+...... ++...|+|||+||+||.++++ ++..+.... .....+....+
T Consensus 445 ~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~ 522 (889)
T KOG4658|consen 445 PLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW 522 (889)
T ss_pred ccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch
Confidence 8 44678999999999999999999876544 566789999999999999999 554444332 22223333446
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCC-ccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPN-SIR 574 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~-~l~ 574 (945)
..+|++++.++....++... .+++|++|.+..+.. ....+..++|..++.||+|| +++| .+.
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLD------------Ls~~~~l~ 585 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLD------------LSGNSSLS 585 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecch----hhhhcCHHHHhhCcceEEEE------------CCCCCccC
Confidence 78999999999887766554 456899999998752 12345667799999999999 5544 478
Q ss_pred ccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCC
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKL 654 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 654 (945)
+||++|+.|.|||||+++++.|..+|.++++|++|.+||+..+..+..+|..+..|++||+|.+.... ...-...++.+
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el 664 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKEL 664 (889)
T ss_pred cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhh
Confidence 99999999999999999999999999999999999999999998888887767779999999987653 11111223444
Q ss_pred CCCCcCCcccccCCcC--CCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 655 TSLRTLDRFVVGGGVD--GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~~--~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
.+|++|....+...+. ......+..|..+.. .+.+.. .........+..+.+|++|.+..+..........
T Consensus 665 ~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~--~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 665 ENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ--SLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hcccchhhheeecchhHhHhhhhhhHHHHHHhH--hhhhcc-----cccceeecccccccCcceEEEEcCCCchhhcccc
Confidence 4444444333322211 011112222222110 000000 1112334456677888888888776432111000
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcC
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHL 789 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 789 (945)
.. .... ..++++..+.+..+.....+.|....++|+.|.+..|...+.+
T Consensus 738 ~~-----~~~~---~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 738 ES-----LIVL---LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cc-----cchh---hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 00 0000 0234555556666665566777777788888888888766654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-66 Score=648.19 Aligned_cols=684 Identities=20% Similarity=0.240 Sum_probs=446.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCcceeec-----cc--CCCCCCCCCccccccCCceecchhHHHHHHHHHhccccCCCCeE
Q 002265 136 AVKIREISEKLDEIAARKDRFNFVENV-----IN--SVKKPERERTISLIDEGEVCGRVDEKNELLSKLCESSEQQKGLH 208 (945)
Q Consensus 136 ~~ki~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~ 208 (945)
..++++|++++.+++... +|.+.... .. +.........++..+..++||+++.++++..+|..+. ++++
T Consensus 133 ~~~~~~w~~al~~~~~~~-g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~---~~~~ 208 (1153)
T PLN03210 133 EDEKIQWKQALTDVANIL-GYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES---EEVR 208 (1153)
T ss_pred hhHHHHHHHHHHHHhCcC-ceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc---CceE
Confidence 357889999998888753 33322110 00 1111111122333455679999999999999986543 4789
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccC-----------------------------------------------------
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNS----------------------------------------------------- 235 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------------------------------------- 235 (945)
+||||||||+||||||+++|+.....+
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~ 288 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGA 288 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHH
Confidence 999999999999999999976532110
Q ss_pred ------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHHHhcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 236 ------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVARMMGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 236 ------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
++|+||||||||+. .+|+.+.....+.++||+||||||++.++..++... +|+++.+++++||+||+++|
T Consensus 289 ~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHh
Confidence 57899999999875 578888877777788999999999999998776654 99999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchH
Q 002265 310 FFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSM 389 (945)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 389 (945)
|+.. .+++++.+++++|+++|+|+|||++++|++|+++ +.++|+.++++..... ...|.++|++||++|+++ .
T Consensus 365 f~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~-~ 437 (1153)
T PLN03210 365 FKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNK-K 437 (1153)
T ss_pred cCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCcc-c
Confidence 9654 3456789999999999999999999999999987 6899999998765433 346999999999999863 4
Q ss_pred HHHHHhhhccCCCCceechHHHHHHHHHhccccccccccHHHHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHH
Q 002265 390 VKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDF 469 (945)
Q Consensus 390 ~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl 469 (945)
.|.||++||+||.++.++ .+..|.+.+.... +..++.|+++||++... ..+.|||++|+|
T Consensus 438 ~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~ 497 (1153)
T PLN03210 438 DKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEM 497 (1153)
T ss_pred hhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHH
Confidence 799999999999987553 4667777665432 22388999999997642 148999999999
Q ss_pred HHHhhcccc--------eEeecCCCccccccCCCCcEEEEEeecCCCCCC---CccccCCCceeEEEeccCCCCCCCchh
Q 002265 470 AQFVSRKEC--------LWLEIDDNKESIIKPSGVKVRHLGLNFEGGDSF---PMSICGLDRLRSLLIYDRSSFNPSLNS 538 (945)
Q Consensus 470 ~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~ 538 (945)
|+.+++++. +|...+.......+.+..+++.+++......++ +.+|.+|++|+.|.++.+.........
T Consensus 498 ~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 498 GKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 999987763 121111111112234456788888876665433 456889999999999765311100011
Q ss_pred hhhHHHhccC-CccceEeeccccccccc----------cccCCCcccccCccccccCccccccccccc-ccccChhhhcC
Q 002265 539 SILSELFSKL-VCLRALVIRQSSLYFHP----------FHLDPNSIREIPKNVRKLIHLKYLNLSELG-IEILPETLCEL 606 (945)
Q Consensus 539 ~~~~~~~~~l-~~Lr~L~l~~~~~~~~~----------l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L 606 (945)
..+|..|..+ ..||.|+|.++++...| +++.++.+..+|.++..+++|++|+|+++. +..+| .++.+
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l 656 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA 656 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccC
Confidence 1133334444 46999997666544333 445555555566666666666666666543 34444 35556
Q ss_pred CcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCC
Q 002265 607 YNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLR 686 (945)
Q Consensus 607 ~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~ 686 (945)
++|++|+|++|..+..+|..++++++|++|++++|..+..+|..+ ++++|+.|++.+|.... .......+|+.|.+.
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~--~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK--SFPDISTNISWLDLD 733 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc--ccccccCCcCeeecC
Confidence 666666666666566666666666666666666665666666544 55666666555443211 011122344444444
Q ss_pred CeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCC-CCC
Q 002265 687 GKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGG-NIF 765 (945)
Q Consensus 687 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l 765 (945)
++ .+..++. .+ .+++|..|.+..+........ . ..........+++|+.|.+++|.. ..+
T Consensus 734 ~n-~i~~lP~----------~~-~l~~L~~L~l~~~~~~~l~~~------~-~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 734 ET-AIEEFPS----------NL-RLENLDELILCEMKSEKLWER------V-QPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred CC-ccccccc----------cc-cccccccccccccchhhcccc------c-cccchhhhhccccchheeCCCCCCcccc
Confidence 32 1222211 11 345555555544321000000 0 000000112357889999988753 567
Q ss_pred CcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCcccee
Q 002265 766 PKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSL 844 (945)
Q Consensus 766 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 844 (945)
|.+++++++|+.|+|++|..++.+|....++ |+.|++++|..+..++.. .++|++|
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-----------------------~~nL~~L 851 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-----------------------STNISDL 851 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-----------------------ccccCEe
Confidence 8888899999999999998888888766778 999999998877654321 2345555
Q ss_pred eccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcchH
Q 002265 845 EIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPLLE 921 (945)
Q Consensus 845 ~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~ 921 (945)
+|+++ .++. +|. .+..+++|+.|+|.+|++++.+|..+..+++|+.+++++|++|.
T Consensus 852 ~Ls~n-~i~~-------------iP~-------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 852 NLSRT-GIEE-------------VPW-------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ECCCC-CCcc-------------ChH-------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 55442 1222 222 33445556666666666666666655566666666666666554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-36 Score=327.52 Aligned_cols=230 Identities=40% Similarity=0.657 Sum_probs=179.7
Q ss_pred chhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc--ccccC----------------------------
Q 002265 186 RVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN--DEVNS---------------------------- 235 (945)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~--~~~~~---------------------------- 235 (945)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++ .+..+
T Consensus 1 re~~~~~l~~~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCC---CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 47899999999999999999999988 32222
Q ss_pred ----------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHHHhcCCCceeeeC
Q 002265 236 ----------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVARMMGTTELDIISI 293 (945)
Q Consensus 236 ----------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~~~l 293 (945)
++++||||||||+. ..|+.+...++....|++||||||+..++..+... ...+++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc-cccccc
Confidence 67999999999986 37888888888777899999999999998877653 358999
Q ss_pred CCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccccc---cC
Q 002265 294 EQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESILESEMWEVEE---IG 370 (945)
Q Consensus 294 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~---~~ 370 (945)
++|+.+||++||++.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|..+++.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997554 123344567899999999999999999999997666778899988765544322 24
Q ss_pred ccchhHHHhhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhcccccc
Q 002265 371 QGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAK 424 (945)
Q Consensus 371 ~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~ 424 (945)
..++.++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++||+...
T Consensus 234 ~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5689999999999999 899999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.9e-25 Score=281.97 Aligned_cols=388 Identities=20% Similarity=0.228 Sum_probs=274.8
Q ss_pred CcEEEEEeecCCCC-CCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccc----------c
Q 002265 496 VKVRHLGLNFEGGD-SFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYF----------H 564 (945)
Q Consensus 496 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~----------~ 564 (945)
..++.+.+..+.+. .++..+..+++|++|+++++... ..++...+..+++||+|++++|.+.. .
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-----~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-----GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-----CcCChHHhccCCCCCEEECcCCccccccCccccCCCC
Confidence 46888988887654 44677889999999999987621 13345566789999999999887752 1
Q ss_pred ccccCCCccc-ccCccccccCccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCC
Q 002265 565 PFHLDPNSIR-EIPKNVRKLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETY 642 (945)
Q Consensus 565 ~l~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 642 (945)
.+++++|.+. .+|..++.+.+|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 2667788765 67888999999999999999876 788899999999999999988667789889999999999999887
Q ss_pred CCccCccCCCCCCCCCcCCcccccCC-cCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEe
Q 002265 643 SLKYMPIGISKLTSLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEF 721 (945)
Q Consensus 643 ~l~~lp~~i~~L~~L~~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 721 (945)
....+|..++++++|++|++..+... ..+.....+.+|+.|.++++.. ....+..+.++++|+.|++++
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL----------SGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee----------eccCchhHhhccCcCEEECcC
Confidence 66788888999999999998877643 3455566777888887775421 122334566778899999988
Q ss_pred ccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEEEecCCCCCcCCC-CCccc-cc
Q 002265 722 GRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELRLVSCVDCEHLPP-LGKLA-LE 798 (945)
Q Consensus 722 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-L~ 798 (945)
|.+.+ ..+..+..+++|+.|++.+|... .+|.++..+++|+.|++++|.....+|. ++.++ |+
T Consensus 294 n~l~~--------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 294 NSLSG--------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred Ceecc--------------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 76421 23344566788999999888764 4678888899999999998887766664 67778 88
Q ss_pred eEeeccccCceEeCccccCCCCCCCCCCC----CCCCCCcCcCCCccceeeccCccccccccccccccccccCCCccccc
Q 002265 799 KLELGNLKSVKRLGNEFLGIEESSEDDPS----SSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPIL 874 (945)
Q Consensus 799 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~ 874 (945)
.|+++++.-...++..+.....+...+.. ....|..+..+++|+.|++++|.--...+. ....+|.|...
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L 433 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS------EFTKLPLVYFL 433 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh------hHhcCCCCCEE
Confidence 88888765222333333222222222221 123455567788899998888653222221 12223332221
Q ss_pred C---C-------CCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 875 E---D-------HRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 875 ~---~-------~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
+ + ..+..+++|+.|++.+|.....+|..+ ..++|+.|++++|..
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l 487 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQF 487 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCcc
Confidence 1 1 123457889999999997777788654 368899999998864
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.5e-24 Score=271.87 Aligned_cols=339 Identities=19% Similarity=0.147 Sum_probs=192.8
Q ss_pred cCCCccc-ccCccccccCccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIR-EIPKNVRKLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 645 (945)
+++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|....
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 5555543 46666777777777777777765 667777777777777777776445667677777777777777765555
Q ss_pred cCccCCCCCCCCCcCCcccccCC-cCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccc
Q 002265 646 YMPIGISKLTSLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRV 724 (945)
Q Consensus 646 ~lp~~i~~L~~L~~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 724 (945)
.+|..++++++|+.|++..+... ..+.....+++|+.|+++++.. ....+..+..+++|+.|++++|.+
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF----------SGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC----------cCcCChHHhCCCCCcEEECCCCee
Confidence 66666677777777776655532 2233344555666666554311 111122334444555555554443
Q ss_pred cCCCCCcc----------ccCchhHHHHHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEEEecCCCCCcCCC-C
Q 002265 725 VDGEGEEG----------RRKNEKDKQLLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELRLVSCVDCEHLPP-L 792 (945)
Q Consensus 725 ~~~~~~~~----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l 792 (945)
.+...... ...+......+..+..+++|+.|.+.+|... .+|..+..+++|+.|++++|.....+|. +
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 21100000 0000011123344556677888887777653 4577777777778888877765555443 3
Q ss_pred Cccc-cceEeeccccCceEeCccccCCCCCCCCCCCC----CCCCCcCcCCCccceeeccCccccccccccccccccccC
Q 002265 793 GKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSS----SSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSI 867 (945)
Q Consensus 793 ~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~ 867 (945)
..++ |+.|++++|.-...++..+ +...+...+... ...|..+..+++|++|+|++|.-...++..+. ....
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~ 524 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS---SCKK 524 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHc---CccC
Confidence 4566 7777777665332222211 111111112211 22334455677777777777643223322111 1111
Q ss_pred CCcccccCC-------CCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcch
Q 002265 868 MPQLPILED-------HRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPLL 920 (945)
Q Consensus 868 lp~l~~~~~-------~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L 920 (945)
+..|.+.++ ..+..+++|+.|+|++|.....+|..+.++++|+.|++++|+..
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 112222221 14566788999999999887889999999999999999999753
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.4e-24 Score=231.55 Aligned_cols=345 Identities=21% Similarity=0.219 Sum_probs=262.3
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
...++.+.+....+..+|..+..+.+|.+|.+.+|. +.. +..-++.++.||.+++.+|++ .+ .
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~------L~~-vhGELs~Lp~LRsv~~R~N~L-------Kn---s 93 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ------LIS-VHGELSDLPRLRSVIVRDNNL-------KN---S 93 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh------hHh-hhhhhccchhhHHHhhhcccc-------cc---C
Confidence 345777777777777778888888888888877765 222 333467778888888555542 11 3
Q ss_pred ccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCccc-ccccCCCeeecCCCCCCccCccCCCC
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGI-GKLMNMRSLLNGETYSLKYMPIGISK 653 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~~i~~ 653 (945)
.+|..|.+|..|..||||+|++.+.|..+.+.+++-+|+|++|+ +.++|..+ .+|+.|-+|+|++| .+..+|+.+..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHH
Confidence 57999999999999999999999999999999999999999987 99999865 68999999999998 89999999999
Q ss_pred CCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 654 LTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 654 L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
|.+||+|.++++...-.. .....+..|+.|.++++ ..-...++.++..+.+|..++++.|++
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T---------qRTl~N~Ptsld~l~NL~dvDlS~N~L-------- 234 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT---------QRTLDNIPTSLDDLHNLRDVDLSENNL-------- 234 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc---------cchhhcCCCchhhhhhhhhccccccCC--------
Confidence 999999999877643210 11112334444444432 222334456677888999999999884
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCC-CCccc-cceEeeccccCceE
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPP-LGKLA-LEKLELGNLKSVKR 810 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-L~~L~l~~~~~L~~ 810 (945)
..+++.+-..++|.+|+|++|.++++....+...+|++|+++.|+ +..+|. +.+|+ |+.|.+.+.. |.
T Consensus 235 -------p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk-L~- 304 (1255)
T KOG0444|consen 235 -------PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK-LT- 304 (1255)
T ss_pred -------CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc-cc-
Confidence 345666777889999999999998888777788999999999985 455665 77788 8888876543 22
Q ss_pred eCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEee
Q 002265 811 LGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRI 890 (945)
Q Consensus 811 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l 890 (945)
| .++|+.++.+.+|+.+...++ +| ...|. +++-++.|+.|.|
T Consensus 305 ----F-------------eGiPSGIGKL~~Levf~aanN-~L-------------ElVPE-------glcRC~kL~kL~L 346 (1255)
T KOG0444|consen 305 ----F-------------EGIPSGIGKLIQLEVFHAANN-KL-------------ELVPE-------GLCRCVKLQKLKL 346 (1255)
T ss_pred ----c-------------cCCccchhhhhhhHHHHhhcc-cc-------------ccCch-------hhhhhHHHHHhcc
Confidence 1 145677888999999988773 33 33444 6677788999999
Q ss_pred ccCcCCCCCCcCCCCCCCccEEEEeCCcchHHHh
Q 002265 891 WYCPKLKVLPDYLLRTTTLQKLTIWGCPLLENRY 924 (945)
Q Consensus 891 ~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~~~ 924 (945)
.++ .|-++|+.|.-++-|+.|+++.+|+|.--.
T Consensus 347 ~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 347 DHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 977 788899999999999999999999885443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.6e-23 Score=220.91 Aligned_cols=334 Identities=25% Similarity=0.287 Sum_probs=234.6
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
..++.|+++.++.+..+-..+..++.||++.+..|..-+ ..++++ +-.+..|.+|| |+.|.+.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn----sGiP~d-iF~l~dLt~lD------------LShNqL~ 116 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN----SGIPTD-IFRLKDLTILD------------LSHNQLR 116 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc----CCCCch-hcccccceeee------------cchhhhh
Confidence 457899999999988888888899999999998876322 244555 56789999999 5556667
Q ss_pred ccCccccccCcccccccccccccccChhh-hcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCC
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEILPETL-CELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISK 653 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 653 (945)
+.|..+..-+++-+|+||+|+|..+|..+ -+|..|-.|||++|+ +..+|+.+..|.+|++|.|++|+....--..+..
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 77777777778888888888888777554 677788888888776 7888888888888888888877422111123445
Q ss_pred CCCCCcCCcccccC--CcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCc
Q 002265 654 LTSLRTLDRFVVGG--GVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEE 731 (945)
Q Consensus 654 L~~L~~L~~~~~~~--~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 731 (945)
+++|++|.+++++. ..+|.....+.+|..++|+.+ +++ .++..+.++++|+.|+|+.|.++...
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N----~Lp-------~vPecly~l~~LrrLNLS~N~iteL~--- 261 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN----NLP-------IVPECLYKLRNLRRLNLSGNKITELN--- 261 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc----CCC-------cchHHHhhhhhhheeccCcCceeeee---
Confidence 67777777766653 234555666677777777633 121 22445667788888888888743221
Q ss_pred cccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCC-CCcCCC-CCccc-cceEeeccccCc
Q 002265 732 GRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVD-CEHLPP-LGKLA-LEKLELGNLKSV 808 (945)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~-~~~l~~-l~~l~-L~~L~l~~~~~L 808 (945)
-....-.+|++|+++.|..+.+|..++.++.|++|.+.+|+. .+.+|+ +|+|- |+++...+.. |
T Consensus 262 ------------~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-L 328 (1255)
T KOG0444|consen 262 ------------MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-L 328 (1255)
T ss_pred ------------ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-c
Confidence 011122478999999999999999999999999999998874 346666 77777 8887776643 4
Q ss_pred eEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceE
Q 002265 809 KRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSL 888 (945)
Q Consensus 809 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L 888 (945)
+..+ .++..|+.|+.|.|+.+. +.++|. .|+-||-|+.|
T Consensus 329 ElVP--------------------EglcRC~kL~kL~L~~Nr--------------LiTLPe-------aIHlL~~l~vL 367 (1255)
T KOG0444|consen 329 ELVP--------------------EGLCRCVKLQKLKLDHNR--------------LITLPE-------AIHLLPDLKVL 367 (1255)
T ss_pred ccCc--------------------hhhhhhHHHHHhcccccc--------------eeechh-------hhhhcCCccee
Confidence 4443 335578999999997642 445666 77788889999
Q ss_pred eeccCcCCCCCCcCCCCCCCccEEEE
Q 002265 889 RIWYCPKLKVLPDYLLRTTTLQKLTI 914 (945)
Q Consensus 889 ~l~~c~~L~~lp~~~~~l~~L~~L~l 914 (945)
+++.+|+|.--|..-..-++|+.-+|
T Consensus 368 DlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 368 DLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred eccCCcCccCCCCcchhhhcceeeec
Confidence 99999999876632222234444333
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.5e-23 Score=213.62 Aligned_cols=239 Identities=23% Similarity=0.261 Sum_probs=200.5
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.+..+.++++....+|.++..+..+..|+++.+. +.. +|.....+..|+.|+ .+++.+.++
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~-lp~~i~s~~~l~~l~------------~s~n~~~el 129 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSE-LPEQIGSLISLVKLD------------CSSNELKEL 129 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------Hhh-ccHHHhhhhhhhhhh------------ccccceeec
Confidence 4667778888888889999999999999988876 233 555678888899998 777778899
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
|++|+.+..|..|+..+|+|.++|++++++.+|..|++.+|. +.++|+...+++.|++|+...| .++.+|+.++.|.+
T Consensus 130 ~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLES 207 (565)
T ss_pred CchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhh
Confidence 999999999999999999999999999999999999999987 8888888888999999999877 78999999999999
Q ss_pred CCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhc-ccccCCCCCeEEEEeccccCCCCCccccC
Q 002265 657 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERS-QLYNKKNLLRLHLEFGRVVDGEGEEGRRK 735 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 735 (945)
|.-|++..+...+.| .+..++.|+.|.++.+ ..+.+++ ...+++++..|+++.|.+
T Consensus 208 L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-----------~i~~lpae~~~~L~~l~vLDLRdNkl----------- 264 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-----------QIEMLPAEHLKHLNSLLVLDLRDNKL----------- 264 (565)
T ss_pred hHHHHhhhcccccCC-CCCccHHHHHHHhccc-----------HHHhhHHHHhcccccceeeecccccc-----------
Confidence 999999888877766 4556677777766522 2233333 345888999999999884
Q ss_pred chhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCC
Q 002265 736 NEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 736 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 784 (945)
..+++.+..+.+|++|+++++.+..+|..++++ +|+.|.+.+|+
T Consensus 265 ----ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 265 ----KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ----ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 456667777889999999999999999999999 99999999884
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.5e-19 Score=228.13 Aligned_cols=319 Identities=24% Similarity=0.272 Sum_probs=226.7
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCC-cc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPN-SI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~-~l 573 (945)
+.++|.+.+..+....+|..+ ...+|+.|.+.++. +.. ++..+..+++|+.|+ ++++ .+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~------l~~-L~~~~~~l~~Lk~L~------------Ls~~~~l 647 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK------LEK-LWDGVHSLTGLRNID------------LRGSKNL 647 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc------ccc-cccccccCCCCCEEE------------CCCCCCc
Confidence 345777777777666766665 46778888877655 112 334456788888888 5544 36
Q ss_pred cccCccccccCccccccccccc-ccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCC
Q 002265 574 REIPKNVRKLIHLKYLNLSELG-IEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGIS 652 (945)
Q Consensus 574 ~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 652 (945)
..+|. ++.+++|++|+|++|. +..+|.++++|++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|..
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-- 723 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-- 723 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--
Confidence 77774 8889999999999976 66999999999999999999999999999876 8999999999999888888854
Q ss_pred CCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 653 KLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 653 ~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
.++|+.|++..+.....|... .+++|..|.+.++.. ..+.. .............++|+.|+++.|..
T Consensus 724 -~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~-~~l~~--~~~~l~~~~~~~~~sL~~L~Ls~n~~-------- 790 (1153)
T PLN03210 724 -STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKS-EKLWE--RVQPLTPLMTMLSPSLTRLFLSDIPS-------- 790 (1153)
T ss_pred -cCCcCeeecCCCccccccccc-cccccccccccccch-hhccc--cccccchhhhhccccchheeCCCCCC--------
Confidence 467888888777765555433 567777777653211 11100 00001111122357899999987752
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeC-CCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceE
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYG-GNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKR 810 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~ 810 (945)
...++..+..+++|+.|++.+|. ...+|..+ .+++|+.|++++|..+..+|.+ .+ |+.|++++.. ++.
T Consensus 791 ------l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~ 860 (1153)
T PLN03210 791 ------LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEE 860 (1153)
T ss_pred ------ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-Ccc
Confidence 12345567788999999999875 46678766 7899999999999988877763 24 8888887642 332
Q ss_pred eCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEee
Q 002265 811 LGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRI 890 (945)
Q Consensus 811 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l 890 (945)
+|.++..+++|+.|++++|.+|+.++. .+..+++|+.|++
T Consensus 861 --------------------iP~si~~l~~L~~L~L~~C~~L~~l~~--------------------~~~~L~~L~~L~l 900 (1153)
T PLN03210 861 --------------------VPWWIEKFSNLSFLDMNGCNNLQRVSL--------------------NISKLKHLETVDF 900 (1153)
T ss_pred --------------------ChHHHhcCCCCCEEECCCCCCcCccCc--------------------ccccccCCCeeec
Confidence 233456789999999999998876654 2334555888888
Q ss_pred ccCcCCCCCC
Q 002265 891 WYCPKLKVLP 900 (945)
Q Consensus 891 ~~c~~L~~lp 900 (945)
.+|++|..++
T Consensus 901 ~~C~~L~~~~ 910 (1153)
T PLN03210 901 SDCGALTEAS 910 (1153)
T ss_pred CCCccccccc
Confidence 8888777553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.3e-19 Score=191.21 Aligned_cols=252 Identities=23% Similarity=0.259 Sum_probs=149.4
Q ss_pred CceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccc
Q 002265 519 DRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEI 598 (945)
Q Consensus 519 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~ 598 (945)
+..++|++++|. +..+-..+|.++++|+.+. +..|.+..+|...+...||+.|+|.+|.|.+
T Consensus 78 ~~t~~LdlsnNk------l~~id~~~f~nl~nLq~v~------------l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s 139 (873)
T KOG4194|consen 78 SQTQTLDLSNNK------LSHIDFEFFYNLPNLQEVN------------LNKNELTRIPRFGHESGHLEKLDLRHNLISS 139 (873)
T ss_pred cceeeeeccccc------cccCcHHHHhcCCcceeee------------eccchhhhcccccccccceeEEeeecccccc
Confidence 356678887776 3344556677888888888 6666667777766666677777777777764
Q ss_pred cC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCc-cCCCCCCCCCcCCcccccCCcCCCCcc
Q 002265 599 LP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMP-IGISKLTSLRTLDRFVVGGGVDGSNTC 675 (945)
Q Consensus 599 lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~ 675 (945)
+- +++.-++.|++|||+.|. +.++|. .+-.-.++++|+|++| .+..+- ..+..+.+|-+|.+..+....+|...+
T Consensus 140 v~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F 217 (873)
T KOG4194|consen 140 VTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF 217 (873)
T ss_pred ccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHh
Confidence 43 456667777777777765 666654 2334466777777766 333332 235666666666666666655554333
Q ss_pred -cccccccCCCCCe-EEEc------CCCCCC-------ChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHH
Q 002265 676 -RLESLKNLQLRGK-CSIE------GLSNVS-------HLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDK 740 (945)
Q Consensus 676 -~l~~L~~L~L~~~-l~i~------~l~~~~-------~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 740 (945)
.+++|+.|+|..+ +.+. .++.+. ++...--..+..+.+++.|+|..|++..
T Consensus 218 k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------------- 283 (873)
T KOG4194|consen 218 KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------------- 283 (873)
T ss_pred hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--------------
Confidence 3666666664322 1111 111111 1111111234556667777777666321
Q ss_pred HHHhcCCCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCCCCCcCCC--CCccc-cceEeeccc
Q 002265 741 QLLEALQPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCVDCEHLPP--LGKLA-LEKLELGNL 805 (945)
Q Consensus 741 ~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~~L~l~~~ 805 (945)
..-.++-.++.|+.|++++|.+..+ +..+...++|+.|+|++|. +..+++ +..|. |++|.|+..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc
Confidence 1122445567788888888777655 4555667788888888774 334443 44566 777777654
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.1e-19 Score=191.63 Aligned_cols=335 Identities=22% Similarity=0.265 Sum_probs=232.7
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
++..+.+..+.+..+|.......+|..|++.+|. +..+..+.++-++.||+|| |+.|.+.++
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~------I~sv~se~L~~l~alrslD------------LSrN~is~i 164 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL------ISSVTSEELSALPALRSLD------------LSRNLISEI 164 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccc------cccccHHHHHhHhhhhhhh------------hhhchhhcc
Confidence 4455555555555555555555566666666554 3333444556666677777 777777777
Q ss_pred Cc-cccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCccccCcccc-cccCCCeeecCCCCCCccC-ccCCC
Q 002265 577 PK-NVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLRELPAGIG-KLMNMRSLLNGETYSLKYM-PIGIS 652 (945)
Q Consensus 577 p~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~~i~-~L~~L~~L~l~~~~~l~~l-p~~i~ 652 (945)
|. ++..-.++++|+|++|.|+.+- ..|..|.+|-+|.|+.|+ +..+|..+. +|++|+.|+|..| .++.+ -..+.
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFq 242 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQ 242 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhc
Confidence 64 4556678999999999999664 467888999999999998 888997555 4999999999887 45443 23578
Q ss_pred CCCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCc
Q 002265 653 KLTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEE 731 (945)
Q Consensus 653 ~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 731 (945)
.|.+|+.|.+..+....+. ..+..+.++++|+|..+ .+...-...+.+++.|+.|++++|.+...
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N----------~l~~vn~g~lfgLt~L~~L~lS~NaI~ri---- 308 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN----------RLQAVNEGWLFGLTSLEQLDLSYNAIQRI---- 308 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccc----------hhhhhhcccccccchhhhhccchhhhhee----
Confidence 8999999988877755442 33557888888887633 34445566788999999999999985432
Q ss_pred cccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCCCCCcCCC--CCccc-cceEeeccccC
Q 002265 732 GRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCVDCEHLPP--LGKLA-LEKLELGNLKS 807 (945)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~~L~l~~~~~ 807 (945)
-.+.+...+.|+.|.|++|..+.+++ .+..|+.|+.|.|+.|. +..+.. +..+. |+.|+|.+..
T Consensus 309 ----------h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 309 ----------HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNE- 376 (873)
T ss_pred ----------ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCe-
Confidence 23456678899999999999999865 56689999999999984 333322 44566 8888887643
Q ss_pred ceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccce
Q 002265 808 VKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSS 887 (945)
Q Consensus 808 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~ 887 (945)
|.-.-.. ....+.++++|++|.+.|+ +++.++. +.+..|++|+.
T Consensus 377 ls~~IED----------------aa~~f~gl~~LrkL~l~gN-qlk~I~k-------------------rAfsgl~~LE~ 420 (873)
T KOG4194|consen 377 LSWCIED----------------AAVAFNGLPSLRKLRLTGN-QLKSIPK-------------------RAFSGLEALEH 420 (873)
T ss_pred EEEEEec----------------chhhhccchhhhheeecCc-eeeecch-------------------hhhccCcccce
Confidence 2111110 0112457899999999884 4544432 34566777999
Q ss_pred EeeccCcCCCCC-CcCCCCCCCccEEEEe
Q 002265 888 LRIWYCPKLKVL-PDYLLRTTTLQKLTIW 915 (945)
Q Consensus 888 L~l~~c~~L~~l-p~~~~~l~~L~~L~l~ 915 (945)
|+|.+|+ +.++ |..+.++ .|++|.+.
T Consensus 421 LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 421 LDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 9999984 5554 4555555 88887543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=9.9e-21 Score=193.16 Aligned_cols=368 Identities=22% Similarity=0.232 Sum_probs=254.6
Q ss_pred EEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc
Q 002265 499 RHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK 578 (945)
Q Consensus 499 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~ 578 (945)
..+.+.++....+...+.++..+.+|.++++.. .. +|..++.+..+..|+ .+.+++.++|+
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l------~~-lp~aig~l~~l~~l~------------vs~n~ls~lp~ 108 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKL------SQ-LPAAIGELEALKSLN------------VSHNKLSELPE 108 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchh------hh-CCHHHHHHHHHHHhh------------cccchHhhccH
Confidence 344555666665566677778888888887762 23 444467777777777 67777888999
Q ss_pred cccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCC
Q 002265 579 NVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLR 658 (945)
Q Consensus 579 ~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 658 (945)
.++.+..|+.|+.++|.+..+|++|+.+..|+.|+..+|+ +.++|.+++++.+|..|++.++ .++.+|+..-.++.|+
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLK 186 (565)
T ss_pred HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877 8888998999999999988888 6677777766689999
Q ss_pred cCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchh
Q 002265 659 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEK 738 (945)
Q Consensus 659 ~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 738 (945)
+|+...+-.+..|.....+.+|.-|+|+.+ .+..+| .+.+|+.|..|++..|.+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-----------ef~gcs~L~Elh~g~N~i-------------- 240 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLP-----------EFPGCSLLKELHVGENQI-------------- 240 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCC-----------CCCccHHHHHHHhcccHH--------------
Confidence 998877777777777778888888877743 222222 466677788888777762
Q ss_pred HHHH-HhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccccceEeeccccCceEeCccccC
Q 002265 739 DKQL-LEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLALEKLELGNLKSVKRLGNEFLG 817 (945)
Q Consensus 739 ~~~~-~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~L~~L~l~~~~~L~~l~~~~~~ 817 (945)
.-+ .+....++++..|+++.+...++|..++-+.+|..||+++|....--+.+|.+.|+.|.+.+.+ |+++..++..
T Consensus 241 -~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP-lrTiRr~ii~ 318 (565)
T KOG0472|consen 241 -EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP-LRTIRREIIS 318 (565)
T ss_pred -HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc-hHHHHHHHHc
Confidence 222 2344577899999999999999999999999999999999865444445888888888887765 4443221110
Q ss_pred ---------------------CCCCCCCC-CCCCCCCCcCcCCCccceeeccCcccccccccccc-------------cc
Q 002265 818 ---------------------IEESSEDD-PSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRIT-------------RK 862 (945)
Q Consensus 818 ---------------------~~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~-------------~~ 862 (945)
..+.+... .......+.....-+.+.|.+++ .+++.++.... +.
T Consensus 319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc
Confidence 00000000 00122222333455677777766 33443332110 00
Q ss_pred ccccCCCc----c-----------cccC--CCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCC
Q 002265 863 ENVSIMPQ----L-----------PILE--DHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGC 917 (945)
Q Consensus 863 ~~~~~lp~----l-----------~~~~--~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 917 (945)
.....+|. + ...+ ...++.+++|..|+++++ .+.++|..++.+.+|+.|+++.+
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc
Confidence 11222331 0 0000 113566889999999998 79999999999999999999987
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=6.4e-19 Score=198.20 Aligned_cols=380 Identities=27% Similarity=0.296 Sum_probs=202.3
Q ss_pred ecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCcccccc
Q 002265 504 NFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKL 583 (945)
Q Consensus 504 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L 583 (945)
+....+.+|..+..-..+..|.+..|... ..+-++..+.-+|+.|| +++|.+..+|..|..+
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l------~~pl~~~~~~v~L~~l~------------lsnn~~~~fp~~it~l 67 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLL------SRPLEFVEKRVKLKSLD------------LSNNQISSFPIQITLL 67 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccccc------cCchHHhhheeeeEEee------------ccccccccCCchhhhH
Confidence 33444455555555555666666555421 11233344444588888 6666666777777777
Q ss_pred CcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcc
Q 002265 584 IHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRF 663 (945)
Q Consensus 584 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~ 663 (945)
.+|+.|+++.|.|..+|.+++++.+|++|+|.+|. +..+|.++..+++|++|+++.| ....+|..|..++.+..+...
T Consensus 68 ~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhh
Confidence 77777777777777777777777777777777665 7777777777777777777776 455666666666655555544
Q ss_pred ccc-CCcCCCC----------------ccccccccc-CCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEecccc
Q 002265 664 VVG-GGVDGSN----------------TCRLESLKN-LQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVV 725 (945)
Q Consensus 664 ~~~-~~~~~~~----------------~~~l~~L~~-L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 725 (945)
++. ....+.. ......|++ |+|+.+- .....+.++.+|+.|....|.+.
T Consensus 146 ~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~-------------~~~~dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 146 NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE-------------MEVLDLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred cchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch-------------hhhhhhhhccchhhhhhhhcccc
Confidence 441 1111100 111112222 2232210 11233444444444444444432
Q ss_pred CCCCCc----cccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCC----------------
Q 002265 726 DGEGEE----GRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVD---------------- 785 (945)
Q Consensus 726 ~~~~~~----~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~---------------- 785 (945)
..+... ..............-..+.+|+++.++.+....+|+|++.+.+|+.|....|..
T Consensus 213 ~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 213 ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 211000 000000000011122345789999999999888999999999999998887743
Q ss_pred ------CCcCCC-CCccc-cceEeeccccCceEeCccccCCC---------------CCC-----------CCCCC----
Q 002265 786 ------CEHLPP-LGKLA-LEKLELGNLKSVKRLGNEFLGIE---------------ESS-----------EDDPS---- 827 (945)
Q Consensus 786 ------~~~l~~-l~~l~-L~~L~l~~~~~L~~l~~~~~~~~---------------~~~-----------~~~~~---- 827 (945)
++.+|+ +..+. |++|+|.... |..++..+.... .+. ..+..
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 122333 23355 7777775432 333222111100 000 00111
Q ss_pred CCCCCCcCcCCCccceeeccCc----------cccccccccccccccccCCC-------ccc--------ccCCCCCCCC
Q 002265 828 SSSSSSSVTAFPKLKSLEIKGL----------DELEEWNYRITRKENVSIMP-------QLP--------ILEDHRTTDI 882 (945)
Q Consensus 828 ~~~~~~~~~~~~~L~~L~L~~~----------~~L~~~~~~~~~~~~~~~lp-------~l~--------~~~~~~l~~l 882 (945)
.....+-+.+|++|+.|+|+++ .+|+++.....+...+..+| .|. +...+.+.++
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l 451 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQL 451 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhc
Confidence 2223344678888999988874 23333322222222333333 111 1223356667
Q ss_pred CccceEeeccCcCCCC--CCcCCCCCCCccEEEEeCCcc
Q 002265 883 PRLSSLRIWYCPKLKV--LPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 883 ~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~ 919 (945)
|.|+.++++.| +|+. +|...- -++|++|+++|++.
T Consensus 452 ~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCcc
Confidence 88899998876 5654 333221 17899999999985
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=4.5e-17 Score=183.51 Aligned_cols=145 Identities=24% Similarity=0.238 Sum_probs=98.4
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
++.++.++++....+|..+..+.+|+.|.++.+. +.. .|....++++|++|. |.+|.+..+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~------i~~-vp~s~~~~~~l~~ln------------L~~n~l~~l 106 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY------IRS-VPSSCSNMRNLQYLN------------LKNNRLQSL 106 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh------Hhh-Cchhhhhhhcchhhe------------eccchhhcC
Confidence 4777778877777888888888888888877765 222 345567778888888 777777788
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
|.++..+++|+||+++.|.+...|.-+..+..++.++.++|..+..++... .+++++..+.....++.+++.++.
T Consensus 107 P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 107 PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe
Confidence 888888888888888888888888777777777777777764444444322 444444444444555555555555
Q ss_pred CCcCCcccccC
Q 002265 657 LRTLDRFVVGG 667 (945)
Q Consensus 657 L~~L~~~~~~~ 667 (945)
.|++..+..
T Consensus 182 --~ldLr~N~~ 190 (1081)
T KOG0618|consen 182 --QLDLRYNEM 190 (1081)
T ss_pred --eeecccchh
Confidence 455554443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.1e-14 Score=166.62 Aligned_cols=249 Identities=20% Similarity=0.237 Sum_probs=172.6
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
++.+.+..+|..+. .+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|++|++++| .+..+
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N-~L~~L 277 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN-PLTHL 277 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCC-chhhh
Confidence 77777888998775 4899999999999999863 5889999999986 8888863 468889999888 56777
Q ss_pred ccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCC
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDG 727 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 727 (945)
|... ++|+.|++..+.....+. .+++|+.|+++++ .+..++.. ..+|+.|.+++|.+...
T Consensus 278 p~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l-------------p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPAL-------------PSELCKLWAYNNQLTSL 337 (788)
T ss_pred hhch---hhcCEEECcCCccccccc---cccccceeECCCC-ccccCCCC-------------cccccccccccCccccc
Confidence 7533 566777777766554433 3467888888755 33333211 13567777777764221
Q ss_pred CCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeecccc
Q 002265 728 EGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~ 806 (945)
+ ..+.+|+.|++++|....+|.. ..+|+.|++++|. +..+|.+ .+ |+.|+++++.
T Consensus 338 ---------------P---~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l--~~~L~~LdLs~N~ 393 (788)
T PRK15387 338 ---------------P---TLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL--PSGLKELIVSGNR 393 (788)
T ss_pred ---------------c---ccccccceEecCCCccCCCCCC---Ccccceehhhccc-cccCccc--ccccceEEecCCc
Confidence 1 1235788999998888888763 4577888888875 4456653 23 8888887653
Q ss_pred CceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccc
Q 002265 807 SVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLS 886 (945)
Q Consensus 807 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~ 886 (945)
+..++. ..++|+.|+++++. ++. +|.+ ..+|+
T Consensus 394 -Lt~LP~-----------------------l~s~L~~LdLS~N~-Lss-------------IP~l----------~~~L~ 425 (788)
T PRK15387 394 -LTSLPV-----------------------LPSELKELMVSGNR-LTS-------------LPML----------PSGLL 425 (788)
T ss_pred -ccCCCC-----------------------cccCCCEEEccCCc-CCC-------------CCcc----------hhhhh
Confidence 322211 23578899998853 332 3321 12488
Q ss_pred eEeeccCcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 887 SLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 887 ~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
.|++++| .++.+|..+.++++|+.|++++|+.
T Consensus 426 ~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 426 SLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 8999988 6889998888899999999999975
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=3e-13 Score=158.45 Aligned_cols=131 Identities=22% Similarity=0.175 Sum_probs=85.0
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCcc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN 579 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~ 579 (945)
.+.+..+++..+|..+. ++|+.|.+.+|.. .. +|. .+++|++|+ +++|.+..+|..
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~L------t~-LP~---lp~~Lk~Ld------------Ls~N~LtsLP~l 260 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNL------TS-LPA---LPPELRTLE------------VSGNQLTSLPVL 260 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcC------CC-CCC---CCCCCcEEE------------ecCCccCcccCc
Confidence 45666666667776654 4788888877652 12 222 346788888 555666666643
Q ss_pred ccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCc
Q 002265 580 VRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRT 659 (945)
Q Consensus 580 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 659 (945)
..+|+.|++++|.+..+|... .+|+.|++++|. +..+|.. +++|++|++++| .+..+|... .+|+.
T Consensus 261 ---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~ 326 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCK 326 (788)
T ss_pred ---ccccceeeccCCchhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---ccccc
Confidence 357788888888888777633 567788888876 7777762 467888888887 566666432 23555
Q ss_pred CCcccccCC
Q 002265 660 LDRFVVGGG 668 (945)
Q Consensus 660 L~~~~~~~~ 668 (945)
|++.++...
T Consensus 327 L~Ls~N~L~ 335 (788)
T PRK15387 327 LWAYNNQLT 335 (788)
T ss_pred cccccCccc
Confidence 555544433
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=5.6e-15 Score=134.02 Aligned_cols=155 Identities=22% Similarity=0.329 Sum_probs=115.1
Q ss_pred cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccc
Q 002265 514 SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSE 593 (945)
Q Consensus 514 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~ 593 (945)
.+.+++++..|.++++. +..++|. +..+++|.+|+ +.+|.++++|.+|+.|++|+.|+++-
T Consensus 28 gLf~~s~ITrLtLSHNK------l~~vppn-ia~l~nlevln------------~~nnqie~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK------LTVVPPN-IAELKNLEVLN------------LSNNQIEELPTSISSLPKLRILNVGM 88 (264)
T ss_pred cccchhhhhhhhcccCc------eeecCCc-HHHhhhhhhhh------------cccchhhhcChhhhhchhhhheecch
Confidence 34466677777777765 2222333 66777888888 67777788888888888888888888
Q ss_pred ccccccChhhhcCCcccEEEecCCCC-ccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCC
Q 002265 594 LGIEILPETLCELYNLQKLDIRRCRN-LRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGS 672 (945)
Q Consensus 594 ~~i~~lp~~i~~L~~L~~L~L~~~~~-l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~ 672 (945)
|++..+|..||.++.|++|||..|.. -..+|..|..++.|+-|+++.| ..+.+|..+++|++||+|.+..+...+.|.
T Consensus 89 nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 89 NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 88888888888888888888887652 2467888888888888888887 667788888888888888877777666666
Q ss_pred CcccccccccCCCCCe
Q 002265 673 NTCRLESLKNLQLRGK 688 (945)
Q Consensus 673 ~~~~l~~L~~L~L~~~ 688 (945)
....+..|+.|.++|+
T Consensus 168 eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHHHHhcccc
Confidence 6666666666666654
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=9.5e-15 Score=132.55 Aligned_cols=129 Identities=25% Similarity=0.328 Sum_probs=74.1
Q ss_pred ccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCC
Q 002265 582 KLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLD 661 (945)
Q Consensus 582 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 661 (945)
.+.+...|-||+|+++.+|+.|.+|.+|+.|++.+|+ +.++|.+|..|++|++|+++-| .+..+|.++|.++-|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 4455556666666666666666666666666666655 6666666666666666666544 5556666666666666666
Q ss_pred ccccc--CCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEecc
Q 002265 662 RFVVG--GGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGR 723 (945)
Q Consensus 662 ~~~~~--~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 723 (945)
+.++. ....|..++.+..|+.|.|+.+ + -+.++..++++++|+.|.+..|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn----------d-fe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN----------D-FEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC----------C-cccCChhhhhhcceeEEeeccCc
Confidence 65554 2334455556666666665532 1 12233444555555555555444
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-13 Score=165.90 Aligned_cols=252 Identities=26% Similarity=0.275 Sum_probs=162.9
Q ss_pred cCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc--ccccCcc-ccccCcccccccc
Q 002265 516 CGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS--IREIPKN-VRKLIHLKYLNLS 592 (945)
Q Consensus 516 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~--l~~lp~~-i~~L~~L~~L~L~ 592 (945)
.+....|...+.++... .++. -...+.|++|- +.++. +..++.. |..+++|++|||+
T Consensus 520 ~~~~~~rr~s~~~~~~~-------~~~~-~~~~~~L~tLl------------l~~n~~~l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-------HIAG-SSENPKLRTLL------------LQRNSDWLLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred cchhheeEEEEeccchh-------hccC-CCCCCccceEE------------EeecchhhhhcCHHHHhhCcceEEEECC
Confidence 34567777777776521 1111 12344688887 44443 5566554 6779999999999
Q ss_pred ccc-ccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCC
Q 002265 593 ELG-IEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDG 671 (945)
Q Consensus 593 ~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~ 671 (945)
+|. +.+||++|++|.+|++|+++++. +..+|.++++|++|.+|++..+..+..+|..+..|++|++|.++........
T Consensus 580 ~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 765 77999999999999999999988 9999999999999999999999887777766777999999998766521111
Q ss_pred CCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCC----eEEEEeccccCCCCCccccCchhHHHHHhcCC
Q 002265 672 SNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLL----RLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQ 747 (945)
Q Consensus 672 ~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 747 (945)
.....+..|++|. .+.+...+. .....+..+..|. .+.+.++. .......+.
T Consensus 659 ~~l~el~~Le~L~---~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~---------------~~~~~~~~~ 714 (889)
T KOG4658|consen 659 LLLKELENLEHLE---NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS---------------KRTLISSLG 714 (889)
T ss_pred hhHHhhhcccchh---hheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc---------------cceeecccc
Confidence 1122233333333 111111110 0111112222222 22211111 122334556
Q ss_pred CCCCccEEEEEeeCCCCCC-cccc-----c-ccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeC
Q 002265 748 PPLNLEEFGIVFYGGNIFP-KWLT-----S-LTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLG 812 (945)
Q Consensus 748 ~~~~L~~L~l~~~~~~~lp-~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~ 812 (945)
.+.+|+.|.+.++.+.+.. .|.. . |+++.++.+.+|.....+.+....| |+.|.+..|..++.+-
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 6789999999998875422 2322 2 5678888888888777777766667 9999999988776653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=6e-13 Score=157.11 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=69.1
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
++++.+..+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++| .+..+
T Consensus 185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N-~L~~L 256 (754)
T PRK15370 185 LKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN-RITEL 256 (754)
T ss_pred eCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC-ccCcC
Confidence 66667778887664 578999999999999998775 589999999887 888887553 57899999988 56677
Q ss_pred ccCCCCCCCCCcCCcccccCC
Q 002265 648 PIGISKLTSLRTLDRFVVGGG 668 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~ 668 (945)
|..+. ++|+.|++..+...
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred ChhHh--CCCCEEECcCCccC
Confidence 76654 46777776655433
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.3e-12 Score=154.24 Aligned_cols=241 Identities=19% Similarity=0.233 Sum_probs=156.8
Q ss_pred EEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC
Q 002265 498 VRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP 577 (945)
Q Consensus 498 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp 577 (945)
...+.+...++..+|..+. ++|+.|++.+|.. ..++... +.+|+.|+ +++|.+..+|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~L------tsLP~~l---~~nL~~L~------------Ls~N~LtsLP 236 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNEL------KSLPENL---QGNIKTLY------------ANSNQLTSIP 236 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCC------CcCChhh---ccCCCEEE------------CCCCccccCC
Confidence 4556676666667776543 5788888888762 2322222 24788888 6666667777
Q ss_pred ccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCC
Q 002265 578 KNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSL 657 (945)
Q Consensus 578 ~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 657 (945)
..+. .+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. .+|++|++++| .+..+|..+. ++|
T Consensus 237 ~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL 306 (754)
T PRK15370 237 ATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGI 306 (754)
T ss_pred hhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhH
Confidence 6553 478888999988888888774 578899998776 778887654 58888998887 6677776553 467
Q ss_pred CcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCch
Q 002265 658 RTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNE 737 (945)
Q Consensus 658 ~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 737 (945)
+.|++..+.....+.. ...+|+.|.++++ .+..++ ..+ .++|+.|+++.|.+...
T Consensus 307 ~~L~Ls~N~Lt~LP~~--l~~sL~~L~Ls~N-~Lt~LP----------~~l--~~sL~~L~Ls~N~L~~L---------- 361 (754)
T PRK15370 307 THLNVQSNSLTALPET--LPPGLKTLEAGEN-ALTSLP----------ASL--PPELQVLDVSKNQITVL---------- 361 (754)
T ss_pred HHHHhcCCccccCCcc--ccccceeccccCC-ccccCC----------hhh--cCcccEEECCCCCCCcC----------
Confidence 7787777665544322 2256777776654 222222 112 25788888888874321
Q ss_pred hHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCC-----CCccc-cceEeecccc
Q 002265 738 KDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPP-----LGKLA-LEKLELGNLK 806 (945)
Q Consensus 738 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-----l~~l~-L~~L~l~~~~ 806 (945)
+..+ +++|+.|+|++|....+|..+. .+|+.|++++|.. ..+|. .+.+| +..|.+.+.+
T Consensus 362 -----P~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 362 -----PETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -----Chhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1111 3578888888888877887654 4688888888754 34443 22335 6666666543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-11 Score=124.97 Aligned_cols=143 Identities=22% Similarity=0.167 Sum_probs=96.6
Q ss_pred EeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc-Cccc
Q 002265 502 GLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-PKNV 580 (945)
Q Consensus 502 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p~~i 580 (945)
.....++.++|..+. +....+.+..|. +..+++.+|+.+++||.|| |+.|.|..| |..|
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~------I~~iP~~aF~~l~~LRrLd------------LS~N~Is~I~p~AF 111 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLD------------LSKNNISFIAPDAF 111 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCC------cccCChhhccchhhhceec------------ccccchhhcChHhh
Confidence 334445556665432 244556666555 5567778888888888888 555566665 5667
Q ss_pred cccCccccccccc-ccccccCh-hhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCcc-CCCCCCCC
Q 002265 581 RKLIHLKYLNLSE-LGIEILPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPI-GISKLTSL 657 (945)
Q Consensus 581 ~~L~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L 657 (945)
..|..|-.|-+.+ |+|+.+|+ .|++|..|+.|.+.-|+.--...+.+..|++|..|.+..| .+..++. .+..+.++
T Consensus 112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAI 190 (498)
T ss_pred hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhcc
Confidence 7787777666665 77888885 4678888888888777633334456777888888888877 5666665 56777777
Q ss_pred CcCCcccc
Q 002265 658 RTLDRFVV 665 (945)
Q Consensus 658 ~~L~~~~~ 665 (945)
+++.+-.+
T Consensus 191 ~tlhlA~n 198 (498)
T KOG4237|consen 191 KTLHLAQN 198 (498)
T ss_pred chHhhhcC
Confidence 77765433
No 23
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.97 E-value=2.6e-09 Score=116.61 Aligned_cols=243 Identities=20% Similarity=0.176 Sum_probs=138.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------CceE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------RKKI 239 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~~~~ 239 (945)
.+|+|+++.++.+...+......+.....+.++|++|+||||||+.+++...... ...-
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 104 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGD 104 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCC
Confidence 5799999999999888764322223456788999999999999999988754321 3456
Q ss_pred EEEEcCccCCCcCChhhHHhhccCC-------------------CCCcEEEEEcCchHHHHHhcCCCceeeeCCCCChHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKND-------------------LHGGKILVTTRNVSVARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~~-------------------~~gs~iiiTtr~~~~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
+|++|++........+.+...+... .+.+-|..|++...+...+...-...+++.+++.++
T Consensus 105 vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e 184 (328)
T PRK00080 105 VLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEE 184 (328)
T ss_pred EEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHH
Confidence 8899999764322223332222111 123345566665444333221112378999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccccccCccchhHHHhh
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESILESEMWEVEEIGQGLLAPLLLS 380 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~s 380 (945)
..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+ ..|........ -....-......+...
T Consensus 185 ~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~-I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 185 LEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGV-ITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCC-CCHHHHHHHHHHhCCC
Confidence 99999988754332222 3457889999999995444443322 12211110000 0000001233445567
Q ss_pred ccCCCCchHHHHHHh-hhccCCCCceechHHHHHHHHHhccccccccccHHHHHHHHHH-HHHHcccccc
Q 002265 381 YNDLPSNSMVKQCFS-YCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEMETIGEEYFN-ILATRSFFQE 448 (945)
Q Consensus 381 y~~L~~~~~~k~cfl-~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 448 (945)
|..|++ ..+..+. ....|..+ .+..+.+- ..+... . +..+..++ .|++.+|++.
T Consensus 254 ~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a------~~lg~~-~----~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 254 ELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLA------AALGEE-R----DTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred cCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHH------HHHCCC-c----chHHHHhhHHHHHcCCccc
Confidence 778877 5566554 55566654 34444332 111111 1 12333344 7889999863
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-10 Score=120.30 Aligned_cols=263 Identities=20% Similarity=0.201 Sum_probs=162.6
Q ss_pred CCcEEEEEeecCCCCCCC-ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFP-MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+.....+.+..|.+..+| .+|..+++||.|+++.|. +..+-|+.|..+..|-.|-+ +.+|.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvl-----------yg~NkI 128 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVL-----------YGNNKI 128 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHh-----------hcCCch
Confidence 556778889999998885 678899999999999987 56778899999998877762 445789
Q ss_pred cccCcc-ccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCC------
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSL------ 644 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l------ 644 (945)
+.+|.. |+.|..|+.|.+.-|.+..+ ...+..|++|..|.+..|. +..++. .+..+..++++.+..+..+
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccc
Confidence 999964 88999999999999998844 5678999999999999987 888887 6788999999988766311
Q ss_pred ------ccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCC--CCCeEEEcCCCCCCChhhhhhcccccCCCCCe
Q 002265 645 ------KYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQ--LRGKCSIEGLSNVSHLDEAERSQLYNKKNLLR 716 (945)
Q Consensus 645 ------~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~--L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 716 (945)
...|...+.........+++.......... ....++.+. +.+. ..+.. ..-...+..+++|+.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k-f~c~~esl~s~~~~~----d~~d~----~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK-FLCSLESLPSRLSSE----DFPDS----ICPAKCFKKLPNLRK 278 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhh-hhhhHHhHHHhhccc----cCcCC----cChHHHHhhcccceE
Confidence 112222333333332222222222111111 111122221 1111 00000 001123666777777
Q ss_pred EEEEeccccCCCCCcccc---------CchhHHHH-HhcCCCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCC
Q 002265 717 LHLEFGRVVDGEGEEGRR---------KNEKDKQL-LEALQPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 717 L~l~~~~l~~~~~~~~~~---------~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 784 (945)
|++++|.+...+...+.. .......+ -..+....+|+.|++.+|.++.+ |-.|..+..|..|.|-.|+
T Consensus 279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred eccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 777777654322110000 00001111 22345667777788877776554 5566677777777776554
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=3.9e-08 Score=124.19 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=154.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
+.+|-|..-.+.+ .. ....+++.|.|++|.||||++.++..... ..
T Consensus 14 ~~~~~R~rl~~~l----~~----~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLAKL----SG----ANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHHHH----hc----ccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 4566666555544 22 13578999999999999999988764321 00
Q ss_pred -----------------------------------CceEEEEEcCccCCCcCChhhHHhhcc-CCCCCcEEEEEcCchH-
Q 002265 236 -----------------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLK-NDLHGGKILVTTRNVS- 278 (945)
Q Consensus 236 -----------------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~-~~~~gs~iiiTtr~~~- 278 (945)
+.+++|||||+...+......+...+. ....+.++|||||...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 468999999997754334343444433 3456678989999842
Q ss_pred H-HHHhcCCCceeeeCC----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCC-H
Q 002265 279 V-ARMMGTTELDIISIE----QLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKST-V 352 (945)
Q Consensus 279 ~-~~~~~~~~~~~~~l~----~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~-~ 352 (945)
. ....... ....++. +|+.+|+.++|........ . .+.+.++.+.|+|.|+++..++..+..... .
T Consensus 165 ~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 165 LGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E----AAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCCC---C----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 1 1111111 1255666 9999999999977553211 1 234678999999999999999887755431 1
Q ss_pred HHHHHHHhhhcccccc-cCccchhHHH-hhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhccccccccccHH
Q 002265 353 EEWESILESEMWEVEE-IGQGLLAPLL-LSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEME 430 (945)
Q Consensus 353 ~~w~~~l~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~ 430 (945)
... .. .... ....+...+. -.|+.||+ +.+..++..|+++. ++.+ +.. .+...
T Consensus 237 ~~~---~~----~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~~---~~~~-l~~-----~l~~~------- 291 (903)
T PRK04841 237 HDS---AR----RLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLRS---MNDA-LIV-----RVTGE------- 291 (903)
T ss_pred hhh---hH----hhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccccc---CCHH-HHH-----HHcCC-------
Confidence 110 11 0111 1122444443 34789998 89999999999873 3322 221 11111
Q ss_pred HHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHHHHHhh
Q 002265 431 TIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVS 474 (945)
Q Consensus 431 ~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~~i~ 474 (945)
+.+...+++|.+.+++...... .+ ..+++|++++++.....
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 1246678999999987532111 11 24678999999987654
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.88 E-value=8.6e-09 Score=111.93 Aligned_cols=234 Identities=21% Similarity=0.184 Sum_probs=137.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------CceE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------RKKI 239 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~~~~ 239 (945)
.+|+|++..++.+..++............+.++|++|+|||+||+.+.+...... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 83 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGD 83 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCC
Confidence 4799999999999988864322223455688999999999999999988754321 3456
Q ss_pred EEEEcCccCCCcCChhhHHhhccC-------------------CCCCcEEEEEcCchHHHHHhcCCCceeeeCCCCChHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKN-------------------DLHGGKILVTTRNVSVARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~-------------------~~~gs~iiiTtr~~~~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
++++|++........+.+...+.. ..+.+-|..||+...+...+...-...+.+++++.++
T Consensus 84 vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 84 VLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred EEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHH
Confidence 899999976433333333322211 1123445566776544333221112368999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhc------CCC--CHHHHHHHHhhhcccccccCcc
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR------SKS--TVEEWESILESEMWEVEEIGQG 372 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~------~~~--~~~~w~~~l~~~~~~~~~~~~~ 372 (945)
..+++.+.+.......+ .+....|++.|+|.|-.+..++..+. ... +.+..+.
T Consensus 164 ~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~--------------- 224 (305)
T TIGR00635 164 LAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK--------------- 224 (305)
T ss_pred HHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH---------------
Confidence 99999988753322222 34567899999999966554443321 000 1111111
Q ss_pred chhHHHhhccCCCCchHHHHHHh-hhccCCCCceechHHHHHHHHHhccccccccccHHHHHHHHHH-HHHHccccc
Q 002265 373 LLAPLLLSYNDLPSNSMVKQCFS-YCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEMETIGEEYFN-ILATRSFFQ 447 (945)
Q Consensus 373 i~~~l~~sy~~L~~~~~~k~cfl-~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~~~~~~~~~-~L~~~sll~ 447 (945)
....+...|..+++ ..+..+. .++.+..+ .+...++ | ..+... ....+..++ .|++++|+.
T Consensus 225 ~l~~l~~~~~~l~~--~~~~~L~al~~~~~~~-~~~~~~i-----a-~~lg~~-----~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 225 ALEMLMIDELGLDE--IDRKLLSVLIEQFQGG-PVGLKTL-----A-AALGED-----ADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHhCCCCCCCCH--HHHHHHHHHHHHhCCC-cccHHHH-----H-HHhCCC-----cchHHHhhhHHHHHcCCcc
Confidence 22224566777877 5555554 44555433 3333222 2 111111 123445566 699999996
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=5.8e-10 Score=122.45 Aligned_cols=71 Identities=23% Similarity=0.164 Sum_probs=41.1
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcC-CCCCCccEEEEEeeCCCC-----CCcccccccCCcEEE
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL-QPPLNLEEFGIVFYGGNI-----FPKWLTSLTNLRELR 779 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~ 779 (945)
..+..+++|+.|+++.|.+.+ .....+...+ ...+.|++|++.+|.... ++..+..+++|+.++
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~----------~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTD----------AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred HHhcccCCCCEEecCCCcCch----------HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 345566778888887776321 0112222222 235678888888776531 233344567888888
Q ss_pred EecCCCC
Q 002265 780 LVSCVDC 786 (945)
Q Consensus 780 L~~~~~~ 786 (945)
+++|..-
T Consensus 285 l~~N~l~ 291 (319)
T cd00116 285 LRGNKFG 291 (319)
T ss_pred CCCCCCc
Confidence 8887643
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=2.5e-10 Score=123.18 Aligned_cols=116 Identities=29% Similarity=0.409 Sum_probs=94.4
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
++.|.+.++|..++.+..|+.|.|+.|.|..+|..+++|..|.+|||+.|. +..+|..++.|+ |+.|.+++| +++.+
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~l 158 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSL 158 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccC
Confidence 777788888888888888899999998888899999999999999998887 888888887776 888888877 78888
Q ss_pred ccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCC
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLR 686 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~ 686 (945)
|.+|+.+..|..|+.+.|.....+.....+..|+.|+++
T Consensus 159 p~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred CcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 988888888888888777766666555566666666554
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.81 E-value=1.8e-08 Score=105.02 Aligned_cols=149 Identities=21% Similarity=0.158 Sum_probs=88.5
Q ss_pred eecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------------
Q 002265 183 VCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------------- 235 (945)
Q Consensus 183 ~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------------- 235 (945)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+......
T Consensus 1 F~gR~~el~~l~~~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHH
Confidence 799999999999988653 246899999999999999987766431100
Q ss_pred -----------------------------------------CceEEEEEcCccCCC------cCChhhHHhhccC--CCC
Q 002265 236 -----------------------------------------RKKIFLVLDDVWDGN------CNKWEPFFRCLKN--DLH 266 (945)
Q Consensus 236 -----------------------------------------~~~~LlvlDdv~~~~------~~~~~~l~~~~~~--~~~ 266 (945)
+++++||+||+.... ..-...+...+.. ...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 345999999996643 0111223333332 123
Q ss_pred CcEEEEEcCchHHHHH--------hcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 267 GGKILVTTRNVSVARM--------MGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 267 gs~iiiTtr~~~~~~~--------~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
.-.+|+++....+... .+.. ..+.+++++.+++++++...+-.. . .. +.-.....+|...+||.|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRF--SHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHH
T ss_pred CceEEEECCchHHHHHhhcccCcccccc--ceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHHH
Confidence 3445555555544433 1222 359999999999999999865322 1 11 12244568999999999988
Q ss_pred HHH
Q 002265 339 AKV 341 (945)
Q Consensus 339 i~~ 341 (945)
|..
T Consensus 231 l~~ 233 (234)
T PF01637_consen 231 LQE 233 (234)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.80 E-value=3e-08 Score=97.22 Aligned_cols=155 Identities=24% Similarity=0.239 Sum_probs=99.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------CceE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------RKKI 239 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~~~~ 239 (945)
.+|||.+.-++.+.-++......++...-+-+||++|+||||||..+++.....+ +++-
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ 103 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGD 103 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCc
Confidence 6799999988887666554332344678899999999999999999998866543 5667
Q ss_pred EEEEcCccCCCcCChhhHHhhccCC--------CCCc-----------EEEEEcCchHHHHHhcCCCceeeeCCCCChHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKND--------LHGG-----------KILVTTRNVSVARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~~--------~~gs-----------~iiiTtr~~~~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
+|++|.+..-+..+-+.+..+..++ ++++ -|=.|||...+...+...-..+.+++..+.+|
T Consensus 104 ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~e 183 (233)
T PF05496_consen 104 ILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEE 183 (233)
T ss_dssp EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHH
T ss_pred EEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHH
Confidence 8889999876655566677666543 2222 24468888766666655544466899999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
-.++..+.+..-. -+-..+.+.+|+++|.|-|--.
T Consensus 184 l~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 184 LAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp HHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHH
T ss_pred HHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHH
Confidence 9999987664222 2223567899999999999543
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=7.3e-10 Score=121.65 Aligned_cols=247 Identities=21% Similarity=0.146 Sum_probs=136.1
Q ss_pred ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccc
Q 002265 513 MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLS 592 (945)
Q Consensus 513 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~ 592 (945)
..+..+++|+.|.+.++..... -...++..+...+.|+.|+++++.+.. ....+..++..+..+.+|++|+++
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~--~~~~i~~~l~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~l~~~~~L~~L~l~ 89 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEE--AAKALASALRPQPSLKELCLSLNETGR-----IPRGLQSLLQGLTKGCGLQELDLS 89 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHH--HHHHHHHHHhhCCCceEEeccccccCC-----cchHHHHHHHHHHhcCceeEEEcc
Confidence 3444556677888777652110 011234446666777888765544210 012233445556667778888887
Q ss_pred ccccc-ccChhhhcCCc---ccEEEecCCCCcc-----ccCcccccc-cCCCeeecCCCCCCc----cCccCCCCCCCCC
Q 002265 593 ELGIE-ILPETLCELYN---LQKLDIRRCRNLR-----ELPAGIGKL-MNMRSLLNGETYSLK----YMPIGISKLTSLR 658 (945)
Q Consensus 593 ~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l~-----~lP~~i~~L-~~L~~L~l~~~~~l~----~lp~~i~~L~~L~ 658 (945)
+|.+. ..+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|.... .++..+..+++
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-- 166 (319)
T cd00116 90 DNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD-- 166 (319)
T ss_pred CCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC--
Confidence 77765 44555555554 8888887776 32 223334455 777777777774221 12222333333
Q ss_pred cCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchh
Q 002265 659 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEK 738 (945)
Q Consensus 659 ~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 738 (945)
|+.|+++++ .+.. .........+...++|+.|+++.|.+.+ ..
T Consensus 167 ---------------------L~~L~l~~n----~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~i~~----------~~ 209 (319)
T cd00116 167 ---------------------LKELNLANN----GIGD--AGIRALAEGLKANCNLEVLDLNNNGLTD----------EG 209 (319)
T ss_pred ---------------------cCEEECcCC----CCch--HHHHHHHHHHHhCCCCCEEeccCCccCh----------HH
Confidence 444444432 0100 0011222334555789999998887431 12
Q ss_pred HHHHHhcCCCCCCccEEEEEeeCCCCC-Ccccc-----cccCCcEEEEecCCCCC----cC-CCCCccc-cceEeecccc
Q 002265 739 DKQLLEALQPPLNLEEFGIVFYGGNIF-PKWLT-----SLTNLRELRLVSCVDCE----HL-PPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 739 ~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~-----~l~~L~~L~L~~~~~~~----~l-~~l~~l~-L~~L~l~~~~ 806 (945)
...+...+..+++|+.|++++|..... +..+. ..+.|+.|++++|.... .+ ..+..++ |+.++++++.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 344556677789999999999875431 11121 24799999999996431 11 1133346 7788877654
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=1.5e-10 Score=124.77 Aligned_cols=167 Identities=23% Similarity=0.362 Sum_probs=128.4
Q ss_pred EEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccc----------cccCC
Q 002265 501 LGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHP----------FHLDP 570 (945)
Q Consensus 501 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~----------l~l~~ 570 (945)
..++.+...++|..+..+..|..+.++.|.. ..+|..+.++..|.+|+++.|++...+ +.+++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN 152 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCI-------RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN 152 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccc-------eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec
Confidence 3444455555565555566666666655541 224445666666666666666655444 34788
Q ss_pred CcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccC
Q 002265 571 NSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIG 650 (945)
Q Consensus 571 ~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~ 650 (945)
|+++.+|+.|+.+.+|..||.+.|.|..+|+.++.|.+|+.|+++.|. +..+|+++..| .|..||++.| ++..+|-.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~ 229 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVD 229 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchh
Confidence 889999999999999999999999999999999999999999999988 88999998855 4889999876 88899999
Q ss_pred CCCCCCCCcCCcccccCCcCCCCcccc
Q 002265 651 ISKLTSLRTLDRFVVGGGVDGSNTCRL 677 (945)
Q Consensus 651 i~~L~~L~~L~~~~~~~~~~~~~~~~l 677 (945)
+.+|+.||+|-+.++...+.+..++..
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhc
Confidence 999999999999888877776555533
No 33
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.76 E-value=1.1e-07 Score=101.51 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=91.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC--------------------------------------------------C
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------------------------------------R 236 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------------------------------------~ 236 (945)
..++.|+|++|+||||+++.+++...... +
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 45799999999999999999887643110 5
Q ss_pred ceEEEEEcCccCCCcCChhhHHhhccCC---CCCcEEEEEcCchHHHHHhc--------CCCceeeeCCCCChHHHHHHH
Q 002265 237 KKIFLVLDDVWDGNCNKWEPFFRCLKND---LHGGKILVTTRNVSVARMMG--------TTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 237 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~---~~gs~iiiTtr~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~lf 305 (945)
++.++|+||++......++.+....... .....|++|.... ....+. ......+.+.+++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 6889999999886555566554322211 2223456665543 222211 111236789999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLL 346 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 346 (945)
...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 87764322111111234678899999999999999888776
No 34
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.76 E-value=6.3e-07 Score=101.28 Aligned_cols=269 Identities=15% Similarity=0.134 Sum_probs=149.0
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc------------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN------------------------ 234 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~------------------------ 234 (945)
.++.++||+++++++...+..... +.....+.|+|++|+|||++++.++++....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 446799999999999999854321 2234557899999999999999988643110
Q ss_pred -----------------------------CCceEEEEEcCccCCC-cCChhhHHhhcc--CCCCCcE--EEEEcCchHHH
Q 002265 235 -----------------------------SRKKIFLVLDDVWDGN-CNKWEPFFRCLK--NDLHGGK--ILVTTRNVSVA 280 (945)
Q Consensus 235 -----------------------------~~~~~LlvlDdv~~~~-~~~~~~l~~~~~--~~~~gs~--iiiTtr~~~~~ 280 (945)
.++..+||||+++... ....+.+...+. ....+++ ||.++....+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 0345899999997642 111222322221 1123333 56666654433
Q ss_pred HHhc-----CCCceeeeCCCCChHHHHHHHHHHhccC--CCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHh-----cC
Q 002265 281 RMMG-----TTELDIISIEQLAEEECWSLFERLVFFD--RSSEDREKLESIGRKIARNCKGLPLAAKVIGNLL-----RS 348 (945)
Q Consensus 281 ~~~~-----~~~~~~~~l~~l~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L-----~~ 348 (945)
.... ......+.+.+++.++..+++..++-.. .....+..++.+++......|..+.|+.++-.+. ++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 1112368999999999999998876322 1123344455566655555677888887764332 11
Q ss_pred CC--CHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhccCCC--CceechHHHHHH--HHHhcccc
Q 002265 349 KS--TVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPK--DYNMDKHELIDL--WMAQDYLN 422 (945)
Q Consensus 349 ~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~--~~~i~~~~Li~~--w~aeg~~~ 422 (945)
.. +.+....+.+... .....-.+..||. +.|..+..++...+ ...+...++... .+++.+-.
T Consensus 267 ~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred CCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 4555655554321 1223446778887 54544433332211 123444454432 22222110
Q ss_pred ccccccHHHHHHHHHHHHHHccccccccc--CCCCCcceeEec
Q 002265 423 AKANKEMETIGEEYFNILATRSFFQEFEK--NDDDNIRSCKMH 463 (945)
Q Consensus 423 ~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~~~~mH 463 (945)
... .......|++.|.+.+++..... +..|..+.++.+
T Consensus 335 --~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 335 --EPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred --CcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 000 12334568999999999986432 223444444443
No 35
>PF05729 NACHT: NACHT domain
Probab=98.62 E-value=1.1e-07 Score=92.99 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=71.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC---------------------------------------------------C
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------------------------R 236 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------------------------~ 236 (945)
|++.|.|.+|+||||+++.++....... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5799999999999999998876532211 7
Q ss_pred ceEEEEEcCccCCCcC-------ChhhHHh-hccC-CCCCcEEEEEcCchHHH---HHhcCCCceeeeCCCCChHHHHHH
Q 002265 237 KKIFLVLDDVWDGNCN-------KWEPFFR-CLKN-DLHGGKILVTTRNVSVA---RMMGTTELDIISIEQLAEEECWSL 304 (945)
Q Consensus 237 ~~~LlvlDdv~~~~~~-------~~~~l~~-~~~~-~~~gs~iiiTtr~~~~~---~~~~~~~~~~~~l~~l~~~~~~~l 304 (945)
++++||+|++++.... .+..+.. .++. ..++.+||||+|..... ...... ..+++.+|++++..++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSEEDIKQY 158 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCHHHHHHH
Confidence 8999999999764321 1223332 2332 25789999999997662 223332 3799999999999999
Q ss_pred HHHHh
Q 002265 305 FERLV 309 (945)
Q Consensus 305 f~~~~ 309 (945)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 97654
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=2.2e-08 Score=113.27 Aligned_cols=183 Identities=33% Similarity=0.348 Sum_probs=132.4
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccC-cccccccccccccccChhhhcCCcccEEEecCCCCcccc
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLI-HLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLREL 623 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 623 (945)
...++.+..|+ +.++.+.++|..++.+. +|+.|++++|.+..+|..++.+++|+.|++++|. +..+
T Consensus 112 ~~~~~~l~~L~------------l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l 178 (394)
T COG4886 112 LLELTNLTSLD------------LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDL 178 (394)
T ss_pred hhcccceeEEe------------cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhh
Confidence 44557888998 88888899998888885 9999999999999999899999999999999998 9999
Q ss_pred CcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhh
Q 002265 624 PAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEA 703 (945)
Q Consensus 624 P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~ 703 (945)
|...+.+++|+.|+++++ .+..+|..++.+..|++|.+..+.....+.....+
T Consensus 179 ~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~-------------------------- 231 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNL-------------------------- 231 (394)
T ss_pred hhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhc--------------------------
Confidence 987779999999999998 78888887777777888877665322111111122
Q ss_pred hhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecC
Q 002265 704 ERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSC 783 (945)
Q Consensus 704 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~ 783 (945)
.++..+.+..+.+ ...+..+..+++++.|.++++....++. +..+.+|+.|+++++
T Consensus 232 --------~~l~~l~l~~n~~---------------~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 232 --------KNLSGLELSNNKL---------------EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred --------ccccccccCCcee---------------eeccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 2222222222221 1112344556667777777777777666 777888888888887
Q ss_pred CCCCcCCC
Q 002265 784 VDCEHLPP 791 (945)
Q Consensus 784 ~~~~~l~~ 791 (945)
.....++.
T Consensus 288 ~~~~~~~~ 295 (394)
T COG4886 288 SLSNALPL 295 (394)
T ss_pred cccccchh
Confidence 66555544
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=3.2e-09 Score=110.86 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=90.8
Q ss_pred CCCccEEEEEeeCC-CCCCcc--cccccCCcEEEEecCCCCCc--CCCCCc-cc-cceEeeccccCceEeCccccCCCCC
Q 002265 749 PLNLEEFGIVFYGG-NIFPKW--LTSLTNLRELRLVSCVDCEH--LPPLGK-LA-LEKLELGNLKSVKRLGNEFLGIEES 821 (945)
Q Consensus 749 ~~~L~~L~l~~~~~-~~lp~~--~~~l~~L~~L~L~~~~~~~~--l~~l~~-l~-L~~L~l~~~~~L~~l~~~~~~~~~~ 821 (945)
...|+.|..+++.. ...+-| ..+..+|+.|.+..|+.... +..++. .+ |+.+++..|..... ..+...
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sl--- 367 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASL--- 367 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhh---
Confidence 34555565555442 111111 12567888888888875442 222332 34 77777766642211 111111
Q ss_pred CCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCC-C
Q 002265 822 SEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVL-P 900 (945)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l-p 900 (945)
-.++|.|+.|.++.|...++-. ...+.+ .-..+..|+.|.+.+||.+..- -
T Consensus 368 -------------s~~C~~lr~lslshce~itD~g--------i~~l~~-------~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 368 -------------SRNCPRLRVLSLSHCELITDEG--------IRHLSS-------SSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred -------------ccCCchhccCChhhhhhhhhhh--------hhhhhh-------ccccccccceeeecCCCCchHHHH
Confidence 2378999999999887554321 111111 1123345999999999987653 2
Q ss_pred cCCCCCCCccEEEEeCCcchHHHhccCCCCCcccccccccccccC
Q 002265 901 DYLLRTTTLQKLTIWGCPLLENRYREGKGEDWHMISHIAHIKWSA 945 (945)
Q Consensus 901 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~i~~ip~~~~~~ 945 (945)
+.+.++++|+.+++.+|....+.-.. +-..|.|.++++|
T Consensus 420 e~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVHA 458 (483)
T ss_pred HHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceehh
Confidence 45566889999999999987655332 1345777777764
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.57 E-value=9.2e-07 Score=90.98 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=83.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-----C-----------------CceEEEEEcCccCCC-cCChhh-HHhhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-----S-----------------RKKIFLVLDDVWDGN-CNKWEP-FFRCLK 262 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-----~-----------------~~~~LlvlDdv~~~~-~~~~~~-l~~~~~ 262 (945)
.+.+.+||++|+|||+||+++++..... + .+.-+||+||+|... ...|+. +...+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 3568999999999999999998763211 1 234489999998742 234553 333333
Q ss_pred CC-CCCcEEE-EEcCc---------hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHH
Q 002265 263 ND-LHGGKIL-VTTRN---------VSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARN 331 (945)
Q Consensus 263 ~~-~~gs~ii-iTtr~---------~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 331 (945)
.. ..|+.|| +|++. +++...+.... .++++++++++.++++.+.+....-..+ .+...-|+++
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~--~~~l~~pd~e~~~~iL~~~a~~~~l~l~----~~v~~~L~~~ 192 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE--IYQLNDLTDEQKIIVLQRNAYQRGIELS----DEVANFLLKR 192 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC--eeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHh
Confidence 22 2355554 45544 45666665543 8999999999999999998864332222 3456667788
Q ss_pred cCCChhHHH
Q 002265 332 CKGLPLAAK 340 (945)
Q Consensus 332 c~glPLai~ 340 (945)
+.|-.-++.
T Consensus 193 ~~~d~r~l~ 201 (229)
T PRK06893 193 LDRDMHTLF 201 (229)
T ss_pred ccCCHHHHH
Confidence 876554443
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.56 E-value=3.1e-07 Score=96.48 Aligned_cols=194 Identities=21% Similarity=0.232 Sum_probs=113.4
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------ 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------ 235 (945)
..+++|-+..+.++++ ...+.-+-+||++|+||||||+.+.......+
T Consensus 29 Q~HLlg~~~~lrr~v~--------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~ 100 (436)
T COG2256 29 QEHLLGEGKPLRRAVE--------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNR 100 (436)
T ss_pred hHhhhCCCchHHHHHh--------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHH
Confidence 3445555555444433 23677888999999999999999988765544
Q ss_pred --CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE--EcCchHH--HHH-hcCCCceeeeCCCCChHHHHHHHHHH
Q 002265 236 --RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV--TTRNVSV--ARM-MGTTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 236 --~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii--Ttr~~~~--~~~-~~~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
+++.+|++|.|..-+..+-+.+..... .|.-|+| ||-++.- -.. ... ..++++++|+.++-.+++.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSR--ARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhh--hheeeeecCCHHHHHHHHHHH
Confidence 789999999998765555565554444 4666666 5555431 111 122 349999999999999999884
Q ss_pred hccCCCCcc--hH-HHHHHHHHHHHHcCCChh-HHHHH--HHHhcCCC---CHHHHHHHHhhhccccccc---CccchhH
Q 002265 309 VFFDRSSED--RE-KLESIGRKIARNCKGLPL-AAKVI--GNLLRSKS---TVEEWESILESEMWEVEEI---GQGLLAP 376 (945)
Q Consensus 309 ~~~~~~~~~--~~-~~~~~~~~i~~~c~glPL-ai~~~--~~~L~~~~---~~~~w~~~l~~~~~~~~~~---~~~i~~~ 376 (945)
+......-. .. --++.-..++..++|--- |+..+ +..+.... ..+.-+++++......... ..++..+
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA 255 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISA 255 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHH
Confidence 322111111 00 113355667788877432 22222 22222211 2445555555433222222 2345666
Q ss_pred HHhhccCCCC
Q 002265 377 LLLSYNDLPS 386 (945)
Q Consensus 377 l~~sy~~L~~ 386 (945)
+.-|...-++
T Consensus 256 ~hKSvRGSD~ 265 (436)
T COG2256 256 LHKSVRGSDP 265 (436)
T ss_pred HHHhhccCCc
Confidence 7777776555
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=2.5e-08 Score=96.10 Aligned_cols=105 Identities=30% Similarity=0.359 Sum_probs=33.9
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCcccc-ccCcccccccccccccccChhhhcCCcccEEEecCCCCcccc
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVR-KLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLREL 623 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~-~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 623 (945)
+.+...+|.|+ |.++.+..+ +.++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..+
T Consensus 15 ~~n~~~~~~L~------------L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i 79 (175)
T PF14580_consen 15 YNNPVKLRELN------------LRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-
T ss_pred ccccccccccc------------ccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCcc
Confidence 34555788888 777777777 4566 5788999999999999885 58889999999999987 8788
Q ss_pred Ccccc-cccCCCeeecCCCCCCccCc--cCCCCCCCCCcCCcccc
Q 002265 624 PAGIG-KLMNMRSLLNGETYSLKYMP--IGISKLTSLRTLDRFVV 665 (945)
Q Consensus 624 P~~i~-~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~~ 665 (945)
+..+. .+++|++|++++| .+..+- ..+..+++|+.|++.++
T Consensus 80 ~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred ccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCC
Confidence 76553 6899999999887 333321 12333444444444433
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1e-06 Score=99.21 Aligned_cols=152 Identities=22% Similarity=0.242 Sum_probs=97.4
Q ss_pred CceecchhHHHH---HHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 181 GEVCGRVDEKNE---LLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~---l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
.++||++..+.. +..++.. .....+.++|++|+||||+|+.+++.....+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~-----~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~ 86 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQ 86 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc-----CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHH
Confidence 358888877655 6666643 2355788899999999999999987543222
Q ss_pred ----CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE--EcCchH--HHHHhcCCCceeeeCCCCChHHHHHHHHH
Q 002265 236 ----RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV--TTRNVS--VARMMGTTELDIISIEQLAEEECWSLFER 307 (945)
Q Consensus 236 ----~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii--Ttr~~~--~~~~~~~~~~~~~~l~~l~~~~~~~lf~~ 307 (945)
+++.+|++|+++.......+.+...+.. |..++| ||.+.. +...+... ...+.+.+++.++.++++.+
T Consensus 87 ~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR-~~~~~~~~ls~e~i~~lL~~ 162 (413)
T PRK13342 87 RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSR-AQVFELKPLSEEDIEQLLKR 162 (413)
T ss_pred hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhcc-ceeeEeCCCCHHHHHHHHHH
Confidence 3778999999987654555556555543 444554 344322 21122221 24899999999999999988
Q ss_pred HhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 308 LVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
.+....... ..-..+....+++.|+|-+..+..+
T Consensus 163 ~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 163 ALEDKERGL-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 653211100 0112345677889999988665443
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=8.6e-08 Score=92.44 Aligned_cols=128 Identities=28% Similarity=0.278 Sum_probs=49.9
Q ss_pred cCCCceeEEEeccCCCCCCCchhhhhHHHhc-cCCccceEeeccccccccccccCCCcccccCccccccCcccccccccc
Q 002265 516 CGLDRLRSLLIYDRSSFNPSLNSSILSELFS-KLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSEL 594 (945)
Q Consensus 516 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~ 594 (945)
.+..++|.|++.++.. .. +.. +. .+.+|++|+ +++|.+..++ ++..+.+|+.|++++|
T Consensus 16 ~n~~~~~~L~L~~n~I------~~-Ie~-L~~~l~~L~~L~------------Ls~N~I~~l~-~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI------ST-IEN-LGATLDKLEVLD------------LSNNQITKLE-GLPGLPRLKTLDLSNN 74 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-------------TTS--S--T-T----TT--EEE--SS
T ss_pred cccccccccccccccc------cc-ccc-hhhhhcCCCEEE------------CCCCCCcccc-CccChhhhhhcccCCC
Confidence 3445678888887762 12 222 33 567899999 7777777774 5778999999999999
Q ss_pred cccccChhh-hcCCcccEEEecCCCCccccCc--ccccccCCCeeecCCCCCCccCc----cCCCCCCCCCcCCccccc
Q 002265 595 GIEILPETL-CELYNLQKLDIRRCRNLRELPA--GIGKLMNMRSLLNGETYSLKYMP----IGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 595 ~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp----~~i~~L~~L~~L~~~~~~ 666 (945)
.|+.+++.+ ..+++|++|++++|. +..+-. .+..+++|++|++.+|+.. ..+ ..+..+++|+.||...+.
T Consensus 75 ~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 75 RISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence 999887766 468999999999887 554432 3567899999999988432 222 125667777777755444
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=3.9e-08 Score=98.00 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=30.3
Q ss_pred CcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCC
Q 002265 584 IHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 584 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~ 641 (945)
..|..||||+|.|+.+-+++.-+++++.|+++.|. +..+-+ +..|.+|.+|++++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccc
Confidence 44555555555555555555555555555555554 433333 455555555555555
No 44
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.42 E-value=1.8e-05 Score=88.39 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=138.4
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc--------------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-------------------------- 233 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~-------------------------- 233 (945)
+..++||++++++|...+..... +.....+.|+|++|+|||++++.+++....
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 34799999999999999875221 223457899999999999999988753110
Q ss_pred ----------c-----------------------CCceEEEEEcCccCCCcCChhhHHhhccC----CC--CCcEEEEEc
Q 002265 234 ----------N-----------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKN----DL--HGGKILVTT 274 (945)
Q Consensus 234 ----------~-----------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~----~~--~gs~iiiTt 274 (945)
. .++.++||||+++......-+.+...+.. .. ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 0 03468999999976521111112222211 11 223445555
Q ss_pred CchHHHHHh----c-CCCceeeeCCCCChHHHHHHHHHHhccC-CCCcchHHHHHHHHHHHHHcCCCh-hHHHHHHHHh-
Q 002265 275 RNVSVARMM----G-TTELDIISIEQLAEEECWSLFERLVFFD-RSSEDREKLESIGRKIARNCKGLP-LAAKVIGNLL- 346 (945)
Q Consensus 275 r~~~~~~~~----~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~L- 346 (945)
........+ . ......+.+.+.+.+|..+++..++-.. ......++..+.+.+++....|-| .|+..+-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 443322111 1 1112368999999999999999886311 111223333445556677777776 4444332211
Q ss_pred ---c-CC--CCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhccCC--CCceechHHHHHHHH-H
Q 002265 347 ---R-SK--STVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFP--KDYNMDKHELIDLWM-A 417 (945)
Q Consensus 347 ---~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp--~~~~i~~~~Li~~w~-a 417 (945)
. +. -+.+....+.+... .....-+...||. +.|..+..++..- .+..+...++...+. .
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPT--HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 11 14444444443221 1223345667877 5565444443211 233455555555321 1
Q ss_pred hccccccccccHHHHHHHHHHHHHHcccccccc
Q 002265 418 QDYLNAKANKEMETIGEEYFNILATRSFFQEFE 450 (945)
Q Consensus 418 eg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 450 (945)
...+... .-.+.....++..|...+++....
T Consensus 321 ~~~~~~~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGVD--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCCC--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1111111 112355677889999999988643
No 45
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.41 E-value=4.9e-06 Score=95.59 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=153.0
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------------
Q 002265 191 NELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------------------- 235 (945)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------------------- 235 (945)
.+++..|.. ..+.+.+.|.-++|.|||||+.+.........
T Consensus 25 ~rL~~~L~~----~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRR----ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhc----CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 344555543 24689999999999999999988863211110
Q ss_pred ---------------------------CceEEEEEcCccCCCcCChhhHHhhcc-CCCCCcEEEEEcCchHHHHH--hcC
Q 002265 236 ---------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLK-NDLHGGKILVTTRNVSVARM--MGT 285 (945)
Q Consensus 236 ---------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~-~~~~gs~iiiTtr~~~~~~~--~~~ 285 (945)
.+..++||||..-........-...|. ....+-..|+|||+..-... +..
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 678899999997654444444344443 44567899999998642211 111
Q ss_pred CCceeeeCC----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhh
Q 002265 286 TELDIISIE----QLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESILES 361 (945)
Q Consensus 286 ~~~~~~~l~----~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~ 361 (945)
. +...++. .++.+|+-++|.......- + +.-++.+.+..+|-+-|+..++=.++++.+.+.-...+..
T Consensus 181 r-~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG 252 (894)
T COG2909 181 R-DELLEIGSEELRFDTEEAAAFLNDRGSLPL---D----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG 252 (894)
T ss_pred h-hhHHhcChHhhcCChHHHHHHHHHcCCCCC---C----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc
Confidence 0 1133332 5889999999987652211 1 3346788999999999999999888854443333222221
Q ss_pred hcccccccCccchhHH-HhhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 002265 362 EMWEVEEIGQGLLAPL-LLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEMETIGEEYFNIL 440 (945)
Q Consensus 362 ~~~~~~~~~~~i~~~l-~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~~~~~~~~~~L 440 (945)
. ..-+...| .--+|.||+ ++|..++-||+++.-. ..|+..-. -++-|..++++|
T Consensus 253 ~-------~~~l~dYL~eeVld~Lp~--~l~~FLl~~svl~~f~----~eL~~~Lt------------g~~ng~amLe~L 307 (894)
T COG2909 253 A-------ASHLSDYLVEEVLDRLPP--ELRDFLLQTSVLSRFN----DELCNALT------------GEENGQAMLEEL 307 (894)
T ss_pred h-------HHHHHHHHHHHHHhcCCH--HHHHHHHHHHhHHHhh----HHHHHHHh------------cCCcHHHHHHHH
Confidence 0 01122222 245688999 8999999999886521 12222111 123477889999
Q ss_pred HHcccccccccCCCCCcceeEechHHHHHHHHhhc
Q 002265 441 ATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSR 475 (945)
Q Consensus 441 ~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~~i~~ 475 (945)
..++++...-.+. + ..++.|.+..++-..--.
T Consensus 308 ~~~gLFl~~Ldd~-~--~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 308 ERRGLFLQRLDDE-G--QWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HhCCCceeeecCC-C--ceeehhHHHHHHHHhhhc
Confidence 9999886433222 2 357899999999765443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=2.4e-07 Score=104.85 Aligned_cols=117 Identities=27% Similarity=0.323 Sum_probs=62.6
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
+.++.+..+|..++.+++|+.|++++|.+..+|...+.+.+|+.|++++|. +..+|..+..+..|+.|.++++. ....
T Consensus 147 l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~ 224 (394)
T COG4886 147 LSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIEL 224 (394)
T ss_pred ccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceec
Confidence 445555555555556666666666666666666555556666666666655 55565554455556666665552 3344
Q ss_pred ccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCC
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLR 686 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~ 686 (945)
+..+.+++++..|.+..+.....+.....+..++.|+++
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred chhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 445555555555554444333323334444445555544
No 47
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.36 E-value=3.2e-06 Score=102.76 Aligned_cols=270 Identities=16% Similarity=0.151 Sum_probs=163.9
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------------
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------- 235 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------- 235 (945)
.++||+.+++.|...+..-.. ....++.+.|..|||||+|+++|.......+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~--g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK--GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC--CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 378999999999999876543 4567999999999999999999987654331
Q ss_pred --------------------------------------------------------------------------CceEEE
Q 002265 236 --------------------------------------------------------------------------RKKIFL 241 (945)
Q Consensus 236 --------------------------------------------------------------------------~~~~Ll 241 (945)
.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 569999
Q ss_pred EEcCccCCCcCChhhHHhhccCCCC----CcEEE--EEcCchHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCC
Q 002265 242 VLDDVWDGNCNKWEPFFRCLKNDLH----GGKIL--VTTRNVSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSS 315 (945)
Q Consensus 242 vlDdv~~~~~~~~~~l~~~~~~~~~----gs~ii--iTtr~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~ 315 (945)
|+||+...+....+.+......... ...|. .|.+...-.-.........+.+.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 9999966554444333222221110 11222 333332111111222235899999999999999988764322
Q ss_pred cchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCC------CCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchH
Q 002265 316 EDREKLESIGRKIARNCKGLPLAAKVIGNLLRSK------STVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSM 389 (945)
Q Consensus 316 ~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 389 (945)
....+....|+++..|.|+-+..+-..+... .+...|..-..... .... .+.+...+..-.+.||. .
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-~~~~-~~~vv~~l~~rl~kL~~--~ 309 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-ILAT-TDAVVEFLAARLQKLPG--T 309 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-Cchh-hHHHHHHHHHHHhcCCH--H
Confidence 2235578889999999999999988888764 23334433221100 1111 12245557788899998 7
Q ss_pred HHHHHhhhccCCCCceechHHHHHHHHHhccccccccccHHHHHHHHHHHHHHcccccccccCCCC---Ccc-eeEechH
Q 002265 390 VKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEMETIGEEYFNILATRSFFQEFEKNDDD---NIR-SCKMHDI 465 (945)
Q Consensus 390 ~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~---~~~-~~~mHdl 465 (945)
.|+..-..||+...+. .+.|-..+-. .....+....+.|....++...+....+ ... +-..||.
T Consensus 310 t~~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 7999999999876544 4444333321 2233445555556555555422111111 111 2246888
Q ss_pred HHHHHHHhh
Q 002265 466 VHDFAQFVS 474 (945)
Q Consensus 466 v~dl~~~i~ 474 (945)
+++.+-...
T Consensus 378 vqqaaY~~i 386 (849)
T COG3899 378 VQQAAYNLI 386 (849)
T ss_pred HHHHHhccC
Confidence 887765543
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6.4e-06 Score=91.09 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=103.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred hhccChHHHHHHHHHHHHcC----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 46899999999988888642 235678999999999999998887643200
Q ss_pred -------C------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCc
Q 002265 235 -------S------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTEL 288 (945)
Q Consensus 235 -------~------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~ 288 (945)
. +++-++|+|++.......++.+...+.......++|++|.+. .+...+... .
T Consensus 92 ~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR-c 170 (363)
T PRK14961 92 EIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR-C 170 (363)
T ss_pred EecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh-c
Confidence 0 345689999998766556777777777666677777766553 333333222 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
..+++.+++.++..+.+...+-......+ .+.+..|++.++|-|-.
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRD 216 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 48999999999999888776543221112 33566788889997743
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.35 E-value=5.9e-06 Score=85.46 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------CceEEEEE
Q 002265 186 RVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------RKKIFLVL 243 (945)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------~~~~Llvl 243 (945)
.+..++.+.+++.. .....+.|+|+.|+|||+||+.+++...... .+.-+||+
T Consensus 22 ~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvI 96 (226)
T TIGR03420 22 NAELLAALRQLAAG-----KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCL 96 (226)
T ss_pred cHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEE
Confidence 44566677766542 2356899999999999999999886542111 23348999
Q ss_pred cCccCCCcC-C-hhhHHhhccCC-CCCcEEEEEcCchH---------HHHHhcCCCceeeeCCCCChHHHHHHHHHHhcc
Q 002265 244 DDVWDGNCN-K-WEPFFRCLKND-LHGGKILVTTRNVS---------VARMMGTTELDIISIEQLAEEECWSLFERLVFF 311 (945)
Q Consensus 244 Ddv~~~~~~-~-~~~l~~~~~~~-~~gs~iiiTtr~~~---------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~ 311 (945)
||++..... . .+.+...+... ..+.+||+||+... +...+... ..+++.++++++...++...+-.
T Consensus 97 Ddi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~ 174 (226)
T TIGR03420 97 DDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG--LVFQLPPLSDEEKIAALQSRAAR 174 (226)
T ss_pred eChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC--eeEecCCCCHHHHHHHHHHHHHH
Confidence 999765332 2 33444443321 23457889887532 22233222 37999999999999998775432
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 312 DRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
...... .+..+.+++.+.|.|..+..+
T Consensus 175 ~~~~~~----~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 175 RGLQLP----DEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred cCCCCC----HHHHHHHHHhccCCHHHHHHH
Confidence 211112 234566777788888766654
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=3.1e-06 Score=84.80 Aligned_cols=153 Identities=23% Similarity=0.219 Sum_probs=112.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------CceE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------RKKI 239 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~~~~ 239 (945)
.+|+|.++-.+++.=++......++.+.-|-++|++|.||||||.-+++...+.. .+.=
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~D 105 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGD 105 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCC
Confidence 5799999999998888876665566788899999999999999999999876654 5566
Q ss_pred EEEEcCccCCCcCChhhHHhhccC--------CCCCcEEE-----------EEcCchHHHHHhcCCCceeeeCCCCChHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKN--------DLHGGKIL-----------VTTRNVSVARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~--------~~~gs~ii-----------iTtr~~~~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
.+++|.+......--+.+.....+ .++++|.| -|||.-.+...+...-+.+.+++..+.+|
T Consensus 106 VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~e 185 (332)
T COG2255 106 VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEE 185 (332)
T ss_pred eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHH
Confidence 778899977554444445554433 24555544 68998766665555545578999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
-.++..+.+..-.. .-..+-+.+|+++..|-|-
T Consensus 186 L~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 186 LEEIVKRSAKILGI----EIDEEAALEIARRSRGTPR 218 (332)
T ss_pred HHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcH
Confidence 99998887732222 1124568899999999995
No 51
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=5.5e-06 Score=84.59 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=80.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC-------------CceEEEEEcCccCCCcCChhhHHhhccC-CCCCcEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------RKKIFLVLDDVWDGNCNKWEPFFRCLKN-DLHGGKILV 272 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~-~~~gs~iii 272 (945)
-+.+.|||..|+|||+|++.++......+ -+.-+|++||+.... ..-+.+...+.. ...|..||+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEE
Confidence 35689999999999999999886543322 122478889996432 112333333321 123667999
Q ss_pred EcCc---------hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 273 TTRN---------VSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 273 Ttr~---------~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
|++. +++...+.... ++++++++.++-.+++.+++-...-.-+ +++..-|++++.|-.-++.
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl--~~~l~~pd~e~~~~iL~~~~~~~~~~l~----~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAAT--VVEIGEPDDALLSQVIFKLFADRQLYVD----PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCc--eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhhhHHHHH
Confidence 8873 33444455443 8999999999999999988743222122 3455566666666555444
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1e-07 Score=100.31 Aligned_cols=201 Identities=22% Similarity=0.181 Sum_probs=108.2
Q ss_pred cccccCccccccCcccccccccccccccC--hhhhcCCcccEEEecCCCC--ccccCcccccccCCCeeecCCCCCCccC
Q 002265 572 SIREIPKNVRKLIHLKYLNLSELGIEILP--ETLCELYNLQKLDIRRCRN--LRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 572 ~l~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~--l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
++.++-..=.++.+|+...|.++.+...+ +....|++++.|||+.|-. ...+-.-...|++|+.|+++.|. +..
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~- 186 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSN- 186 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccC-
Confidence 34444444456777888888888777666 3566777778888777631 11122223456666666666651 111
Q ss_pred ccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCC
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDG 727 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 727 (945)
| ++... ...++ +|+.|.++.|.++
T Consensus 187 ~--~~s~~------------------~~~l~----------------------------------~lK~L~l~~CGls-- 210 (505)
T KOG3207|consen 187 F--ISSNT------------------TLLLS----------------------------------HLKQLVLNSCGLS-- 210 (505)
T ss_pred C--ccccc------------------hhhhh----------------------------------hhheEEeccCCCC--
Confidence 0 11000 01233 3444444444321
Q ss_pred CCCccccCchhHHHHHhcCCCCCCccEEEEEeeCC-CCCCcccccccCCcEEEEecCCCCC--cCCCCCccc-cceEeec
Q 002265 728 EGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGG-NIFPKWLTSLTNLRELRLVSCVDCE--HLPPLGKLA-LEKLELG 803 (945)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~-L~~L~l~ 803 (945)
..++...+..+|+|+.|.+.+|.. ...-.....++.|+.|+|++|.... .++..+.+| |..|.++
T Consensus 211 -----------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 211 -----------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred -----------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 234444555567777777776631 1111222356788888888887654 346677788 8888877
Q ss_pred cccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcccccccc
Q 002265 804 NLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWN 856 (945)
Q Consensus 804 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~ 856 (945)
.|. +..+..-.. .+..-...||+|++|++..++ ..+|.
T Consensus 280 ~tg-i~si~~~d~-------------~s~~kt~~f~kL~~L~i~~N~-I~~w~ 317 (505)
T KOG3207|consen 280 STG-IASIAEPDV-------------ESLDKTHTFPKLEYLNISENN-IRDWR 317 (505)
T ss_pred ccC-cchhcCCCc-------------cchhhhcccccceeeecccCc-ccccc
Confidence 653 222211000 001112479999999998753 44444
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=2.3e-05 Score=90.30 Aligned_cols=220 Identities=15% Similarity=0.183 Sum_probs=127.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
.+++|.++..+.+.+|+..... +...+.+.|+|++|+||||+|+++++......
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~-g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~ 92 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK-GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSG 92 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccC
Confidence 4699999999999999875332 12367899999999999999999988653111
Q ss_pred ---C-ceEEEEEcCccCCCc----CChhhHHhhccCCCCCcEEEEEcCchH-HHH-HhcCCCceeeeCCCCChHHHHHHH
Q 002265 236 ---R-KKIFLVLDDVWDGNC----NKWEPFFRCLKNDLHGGKILVTTRNVS-VAR-MMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 236 ---~-~~~LlvlDdv~~~~~----~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~-~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
+ ++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .+... ...+++.+++.++....+
T Consensus 93 sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr-~~~I~f~~~~~~~i~~~L 169 (482)
T PRK04195 93 SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNA-CLMIEFKRLSTRSIVPVL 169 (482)
T ss_pred cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhcc-ceEEEecCCCHHHHHHHH
Confidence 2 677999999976432 234555555542 2345666664422 211 12211 347999999999999888
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH-HHHHHHhcCCC--CHHHHHHHHhhhcccccccCccchhHHHhhcc
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA-KVIGNLLRSKS--TVEEWESILESEMWEVEEIGQGLLAPLLLSYN 382 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai-~~~~~~L~~~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~ 382 (945)
...+........ .+....|++.++|-.-++ ..+-.+..++. +.+.-..+.. .+....++.++..-+.
T Consensus 170 ~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 170 KRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALDAVFK 239 (482)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHHHHHC
Confidence 877643332222 345677888888855444 33333222222 3333332221 1122346666664443
Q ss_pred CCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhccccc
Q 002265 383 DLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNA 423 (945)
Q Consensus 383 ~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~ 423 (945)
.=... .....+.. ..++. +.+-.|+.+.+...
T Consensus 240 ~k~~~-~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 240 ARNAD-QALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CCCHH-HHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 21111 22222221 12333 34667999888764
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.3e-07 Score=97.72 Aligned_cols=157 Identities=18% Similarity=0.091 Sum_probs=105.4
Q ss_pred CCcEEEEEeecCCCCCCC--ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 495 GVKVRHLGLNFEGGDSFP--MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
..++|.+++.+......+ .-...|+++|.|+++.|-..+ -...-.+...+++|+.|.++.|.+..
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~Le~LNls~Nrl~~--------- 186 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPSLENLNLSSNRLSN--------- 186 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhcccchhcccccccccC---------
Confidence 456777777777655433 255679999999999875211 12244567889999999966665432
Q ss_pred ccccCcc--ccccCccccccccccccc--ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCc
Q 002265 573 IREIPKN--VRKLIHLKYLNLSELGIE--ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMP 648 (945)
Q Consensus 573 l~~lp~~--i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp 648 (945)
..++ -..+.+|+.|.|+.|.++ .+-.-.-.+++|+.|+|.+|..+..--.....+..|+.|+|++| .+..++
T Consensus 187 ---~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~ 262 (505)
T KOG3207|consen 187 ---FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFD 262 (505)
T ss_pred ---CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccc
Confidence 1111 125788999999999987 33334456799999999998534333333456888999999988 445555
Q ss_pred --cCCCCCCCCCcCCcccccCC
Q 002265 649 --IGISKLTSLRTLDRFVVGGG 668 (945)
Q Consensus 649 --~~i~~L~~L~~L~~~~~~~~ 668 (945)
.-++.++.|..|++..++..
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccccccccchhhhhccccCcc
Confidence 34677777777776655543
No 55
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=8.2e-06 Score=93.10 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=104.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.+++.....
T Consensus 15 ddVIGQe~vv~~L~~aI~~g----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 47999999999999988643 235788999999999999998876543210
Q ss_pred --------C-----------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 235 --------S-----------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 235 --------~-----------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
. +++-++|+|+|...+......+...+.....+.++|++|.+.. +..... ...
T Consensus 91 EIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl-SRC 169 (702)
T PRK14960 91 EIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI-SRC 169 (702)
T ss_pred EecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH-Hhh
Confidence 0 4556889999987765667777777776666778887776533 322221 113
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
..+++++++.++..+.+.+.+-....... ......|++.++|-+-.
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRD 215 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 48999999999999888877643322222 33456788888886633
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=5.9e-06 Score=95.23 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=106.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc------------------------C-
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN------------------------S- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~------------------------~- 235 (945)
.++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+..... .
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 47899999999999988642 235677899999999999998666533210 0
Q ss_pred --------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 236 --------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 236 --------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
++.-++|||++...+...+..++..+.......++|+||++.. +...+... .
T Consensus 92 EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR-C 170 (830)
T PRK07003 92 EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR-C 170 (830)
T ss_pred EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh-e
Confidence 3445788999988766677888887776667788888777643 32222211 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 342 (945)
..+.++.++.++..+.+.+.+.......+ .+....|++.++|-. -|+..+
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48999999999999998887643222122 345677888998844 455543
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=91.93 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=104.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+..++.... -.+.+.++|+.|+||||+|+.+++.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 468999998888888886532 35678999999999999998876654210
Q ss_pred ------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCce
Q 002265 235 ------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTELD 289 (945)
Q Consensus 235 ------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~~ 289 (945)
.+++-++|+|+++......+..+...+........+|++|.. ..+...+... ..
T Consensus 90 l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR-c~ 168 (504)
T PRK14963 90 IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR-TQ 168 (504)
T ss_pred ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc-eE
Confidence 045668899999876656677788777766556666655543 3443333322 34
Q ss_pred eeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 290 IISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 290 ~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
.+++.+++.++..+.+.+.+-....... .+....|++.++|.+--+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 8999999999999999887643322122 345677889999977433
No 58
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.3e-05 Score=90.95 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=104.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..+..+...+... .-.+.+-++|+.|+||||+|+.+++.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 46899999988888776542 234678999999999999999887643210
Q ss_pred -----------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE-EcCchHHHHHhc
Q 002265 235 -----------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV-TTRNVSVARMMG 284 (945)
Q Consensus 235 -----------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii-Ttr~~~~~~~~~ 284 (945)
++++-++|+|+++......+..+...+......+++|+ ||+...+...+.
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 04567899999988766678888888876666667654 555555555443
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 285 TTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
.. ...+++.+++.++..+.+...+-....... .+....|++.++|-+-
T Consensus 177 SR-c~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 177 SR-CQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSAR 224 (507)
T ss_pred hc-ceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 32 347999999999999999887753332222 2345668888888653
No 59
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=1.8e-07 Score=93.34 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=39.3
Q ss_pred ccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCc--cCCCCCCCC
Q 002265 580 VRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMP--IGISKLTSL 657 (945)
Q Consensus 580 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L 657 (945)
+..|.+|..||||+|.++++-..-.+|.|.++|.|++|. +..+. ++++|-+|.+|++++| .+..+- .+||+|+.|
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHH
Confidence 444555555555555554444333445555555555543 33332 2445555555555544 232221 245555555
Q ss_pred CcCCccccc
Q 002265 658 RTLDRFVVG 666 (945)
Q Consensus 658 ~~L~~~~~~ 666 (945)
++|.+.++.
T Consensus 402 E~l~L~~NP 410 (490)
T KOG1259|consen 402 ETLRLTGNP 410 (490)
T ss_pred HHHhhcCCC
Confidence 555544443
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=9.9e-06 Score=89.94 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=102.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..+..+..++.... -.+.+.++|+.|+||||+|+.+++.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccce
Confidence 468999999998888886432 23578999999999999999886543210
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~ 288 (945)
.++.-++|+|++.....+.+..+...+........+|++| ....+...+... .
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR-C 172 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR-C 172 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh-h
Confidence 0455689999998877677888877776554555555444 444443333222 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
..|.+.+++.++..+.+.+.+-....... .+....|++.++|-+-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVR 217 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHH
Confidence 37999999999998888877643222122 3456778899998773
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.20 E-value=1.8e-05 Score=81.64 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=79.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC----------------------CceEEEEEcCccCCC-cCChhh-HHhhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------RKKIFLVLDDVWDGN-CNKWEP-FFRCLK 262 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------~~~~LlvlDdv~~~~-~~~~~~-l~~~~~ 262 (945)
...+.|+|..|+|||+|++++++...... .+.-+||+||+.... ...|.. +...+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 34699999999999999999876533221 334589999996432 123332 332222
Q ss_pred C-CCCCcEEEEEcCch---------HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHc
Q 002265 263 N-DLHGGKILVTTRNV---------SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNC 332 (945)
Q Consensus 263 ~-~~~gs~iiiTtr~~---------~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 332 (945)
. ...|..||+|++.. ++...+... ..+++++++.++-.+++.+++....-..+ .+...-|++++
T Consensus 121 ~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~~~a~~~~l~l~----~e~~~~La~~~ 194 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLRERAQRRGLALD----EAAIDWLLTHG 194 (233)
T ss_pred HHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhC
Confidence 1 12466799999852 233333333 38999999999999999987753222122 34556677777
Q ss_pred CCChhH
Q 002265 333 KGLPLA 338 (945)
Q Consensus 333 ~glPLa 338 (945)
.|-.-+
T Consensus 195 ~rd~r~ 200 (233)
T PRK08727 195 ERELAG 200 (233)
T ss_pred CCCHHH
Confidence 764433
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=1.4e-05 Score=82.47 Aligned_cols=135 Identities=13% Similarity=0.115 Sum_probs=82.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC------------------CceEEEEEcCccCCCcCChhhHHhhccCC-CC
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-LH 266 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~ 266 (945)
..+.+.|+|..|+|||+||+++++...... ...-+||+||+.......-+.+...+... ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~ 120 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAH 120 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence 346789999999999999999987642111 23347899999764333333344444321 23
Q ss_pred Cc-EEEEEcCchHHHH--------HhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 267 GG-KILVTTRNVSVAR--------MMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 267 gs-~iiiTtr~~~~~~--------~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
+. .||+|++...... .+.. ...+++.++++++-..++.+.+-......+ .+....+++.+.|.+.
T Consensus 121 ~~~~vl~~~~~~~~~~~l~~~L~sr~~~--~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~----~~al~~L~~~~~gn~~ 194 (227)
T PRK08903 121 GQGALLVAGPAAPLALPLREDLRTRLGW--GLVYELKPLSDADKIAALKAAAAERGLQLA----DEVPDYLLTHFRRDMP 194 (227)
T ss_pred CCcEEEEeCCCCHHhCCCCHHHHHHHhc--CeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHH
Confidence 33 4667766433211 2222 238999999998877777664422121111 3456677778888888
Q ss_pred HHHHHHHHh
Q 002265 338 AAKVIGNLL 346 (945)
Q Consensus 338 ai~~~~~~L 346 (945)
.+..+-..+
T Consensus 195 ~l~~~l~~l 203 (227)
T PRK08903 195 SLMALLDAL 203 (227)
T ss_pred HHHHHHHHH
Confidence 776665544
No 63
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.20 E-value=1e-05 Score=93.71 Aligned_cols=169 Identities=12% Similarity=0.105 Sum_probs=106.3
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------C---------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN--------S--------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--------~--------------- 235 (945)
.+..+.|||+++++|...|...-.+.....++-|+|++|+|||+.++.|.+..... +
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 34679999999999999887543322334678899999999999999986543100 0
Q ss_pred -----------------------------------CceEEEEEcCccCCCcCChhhHHhhccCC-CCCcEEEE--EcCch
Q 002265 236 -----------------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-LHGGKILV--TTRNV 277 (945)
Q Consensus 236 -----------------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~gs~iii--Ttr~~ 277 (945)
....+||||+|+......-+.+...+.+. ..+++|+| +|.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 12358999999754322223344333322 24555554 33321
Q ss_pred H----HHHHhcCC-CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhc
Q 002265 278 S----VARMMGTT-ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR 347 (945)
Q Consensus 278 ~----~~~~~~~~-~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 347 (945)
+ +...+... ....+...|++.++-.+++..++-.......+..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 11111111 1124677999999999999998864333345566777777777777778888887765554
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.6e-05 Score=86.34 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=104.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc----------------cC---------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV----------------NS--------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~----------------~~--------- 235 (945)
.+++|.+...+.+...+... .-.+..-++|+.|+||||+|+.+++..-. ..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH
Confidence 46889998899999888642 24568899999999999999888763210 00
Q ss_pred ------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHH-HHhcCCCceeeeCCCCChHHHH
Q 002265 236 ------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVA-RMMGTTELDIISIEQLAEEECW 302 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~-~~~~~~~~~~~~l~~l~~~~~~ 302 (945)
+++-++|+|++...+...+..+...+.....++.+|++|.+.+.. ...... ...+.+.++++++..
T Consensus 80 ~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR-c~~~~~~~~~~~~~~ 158 (313)
T PRK05564 80 NIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR-CQIYKLNRLSKEEIE 158 (313)
T ss_pred HHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh-ceeeeCCCcCHHHHH
Confidence 455677778887666677888999998888899999888765422 222221 348999999999998
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 303 SLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 303 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
..+..... . .. .+.+..++..++|.|..+.
T Consensus 159 ~~l~~~~~---~-~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 159 KFISYKYN---D-IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHhc---C-CC----HHHHHHHHHHcCCCHHHHH
Confidence 87765431 1 11 2236678899999886554
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=89.84 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=104.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+..++.+...+... ...+.+-++|+.|+||||+|+.+++....
T Consensus 16 ~diiGq~~~v~~L~~~i~~~----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 46899999999998888642 23567889999999999999888763211
Q ss_pred -----c-------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCc
Q 002265 234 -----N-------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTEL 288 (945)
Q Consensus 234 -----~-------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~ 288 (945)
. .+++-++|+|++...+...++.+...+......+++|++| ....+...+... .
T Consensus 92 eidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR-c 170 (546)
T PRK14957 92 EIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR-C 170 (546)
T ss_pred EeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh-e
Confidence 0 0566689999998776667778888887766666666544 444444332222 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVIG 343 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 343 (945)
..+++++++.++..+.+.+.+-....... ......|++.++|-+ -|+..+-
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 48999999999988777765432221111 334567888888844 4555443
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=89.07 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=108.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+...+... .-.+.+-++|++|+||||+|+.+++.....
T Consensus 14 ~divGq~~i~~~L~~~i~~~----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 46999988877777776532 234678999999999999999886542210
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEE-cCchHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVT-TRNVSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiT-tr~~~~~~~~~~~~~ 288 (945)
++++-++|+|++........+.+...+........+|++ |....+...+... .
T Consensus 90 el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR-~ 168 (472)
T PRK14962 90 ELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR-C 168 (472)
T ss_pred EEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC-c
Confidence 045668999999765444556666666654444555444 4334454444333 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcC-CChhHHHHHHHHhcC--C-CCHHHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCK-GLPLAAKVIGNLLRS--K-STVEEWESIL 359 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~~~~L~~--~-~~~~~w~~~l 359 (945)
..+++.+++.++....+...+........ .+....|++.++ +++.|+..+..+... . -+.+....++
T Consensus 169 ~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 169 QVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred EEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 58999999999988888877643222222 234566777675 567777777654321 1 2455555544
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2e-05 Score=92.80 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=106.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.++||.+..++.|...+... .-.+.+.++|+.|+||||+|+.+++.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 47999999999998888642 235567899999999999999887654211
Q ss_pred -------C------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 235 -------S------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 235 -------~------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
. +++-++|+|++.......+..++..+.......++|++|.+ ..+...+... .
T Consensus 92 EidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR-C 170 (944)
T PRK14949 92 EVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR-C 170 (944)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh-h
Confidence 0 45678999999887767777787777766666776666554 4443332221 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 342 (945)
..|++++++.++..+.+.+.+-...... ..+....|++.++|.|- |+..+
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4899999999999999887663222111 13456778999999774 44443
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=3.3e-06 Score=100.12 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=55.6
Q ss_pred cCCCccc-ccCccccccCccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIR-EIPKNVRKLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 645 (945)
|+++.+. .+|..++.+.+|++|+|++|.+. .+|..++++++|++|||++|.....+|..+++|++|++|++++|....
T Consensus 425 L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 4444432 45666667777777777777665 666667777777777777766445666667777777777777665555
Q ss_pred cCccCCCC
Q 002265 646 YMPIGISK 653 (945)
Q Consensus 646 ~lp~~i~~ 653 (945)
.+|..++.
T Consensus 505 ~iP~~l~~ 512 (623)
T PLN03150 505 RVPAALGG 512 (623)
T ss_pred cCChHHhh
Confidence 66665554
No 69
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=2e-06 Score=102.01 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=74.2
Q ss_pred ccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcc
Q 002265 585 HLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRF 663 (945)
Q Consensus 585 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~ 663 (945)
.++.|+|++|.+. .+|..+++|++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 889999999999999999998556899999999999999999997777889999999999999998
Q ss_pred cccC
Q 002265 664 VVGG 667 (945)
Q Consensus 664 ~~~~ 667 (945)
.+..
T Consensus 499 ~N~l 502 (623)
T PLN03150 499 GNSL 502 (623)
T ss_pred CCcc
Confidence 8763
No 70
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.15 E-value=2.2e-05 Score=86.73 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=96.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|++..++.+..++... ..+.+.++|+.|+||||+|+.+.+.....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCc
Confidence 46899999999998888542 33457899999999999998765532100
Q ss_pred ---------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHH
Q 002265 235 ---------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVA 280 (945)
Q Consensus 235 ---------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~ 280 (945)
...+-+||+||+..........+...+......+++|+||... .+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 0123479999997654333445555555445567788777543 232
Q ss_pred HHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 281 RMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 281 ~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
..+... ...+++.+++.++..+++...+-....... .+....+++.++|-+-.+
T Consensus 170 ~~L~sr-~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 170 PPIRSR-CLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hhhcCC-ceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 333222 347899999999998888886643222222 345667778887755443
No 71
>PRK06620 hypothetical protein; Validated
Probab=98.14 E-value=4.3e-05 Score=77.32 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC-----------CceEEEEEcCccCCCcCChhhHHhhccC-CCCCcEEEEEcC
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS-----------RKKIFLVLDDVWDGNCNKWEPFFRCLKN-DLHGGKILVTTR 275 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------~~~~LlvlDdv~~~~~~~~~~l~~~~~~-~~~gs~iiiTtr 275 (945)
+.+-|||++|+|||+|++.+.+...... ...-++++||+..... ..+...+.. ...|..||+|++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~ 121 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSS 121 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcC
Confidence 6799999999999999999877643211 2334788999953211 122222111 134668999987
Q ss_pred chH-------HHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC
Q 002265 276 NVS-------VARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 276 ~~~-------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 335 (945)
... +...+... -+++++++++++-..++.+.+....- .. -+++..-|++++.|-
T Consensus 122 ~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~~~~l-~l---~~ev~~~L~~~~~~d 182 (214)
T PRK06620 122 DKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFSISSV-TI---SRQIIDFLLVNLPRE 182 (214)
T ss_pred CCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCC
Confidence 532 33334433 28999999999988888777642211 11 134556666666653
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=1.7e-05 Score=90.31 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=104.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.++||.+..++.|.+.+.... -.+.+-++|..|+||||+|+.+.+.....
T Consensus 16 ddVIGQe~vv~~L~~al~~gR----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 479999999999999886532 35678999999999999998876533210
Q ss_pred ------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcC-chHHHHHh
Q 002265 235 ------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTR-NVSVARMM 283 (945)
Q Consensus 235 ------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr-~~~~~~~~ 283 (945)
.++.-++|+|++...+...+..++..+.....+.++|++|. ...+...+
T Consensus 92 hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTI 171 (700)
T PRK12323 92 FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171 (700)
T ss_pred CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHH
Confidence 04556899999988776677777777766555666555554 44444332
Q ss_pred cCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 284 GTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 284 ~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
... ...+.++.++.++..+.+.+.+........ .+....|++.++|.|....
T Consensus 172 rSR-Cq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 172 LSR-CLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHH-HHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 221 347999999999999988876542222111 2345678999999885443
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=1.3e-05 Score=87.27 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=95.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.++.++.+..++... ...-+-++|++|+||||+|+.+++.....
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHH
Confidence 46889988888887776532 23346799999999999998876643100
Q ss_pred ---------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCCCCChHHHHHH
Q 002265 235 ---------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTELDIISIEQLAEEECWSL 304 (945)
Q Consensus 235 ---------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l 304 (945)
.++.-++++|+++.........+...+......+++|+++... .+...+... ...+++.++++++..+.
T Consensus 88 ~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR-c~~i~f~~l~~~~l~~~ 166 (319)
T PLN03025 88 FAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR-CAIVRFSRLSDQEILGR 166 (319)
T ss_pred HHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh-hhcccCCCCCHHHHHHH
Confidence 0235689999998765445555665565545567777776542 222222211 23799999999999988
Q ss_pred HHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 305 FERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 305 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
+...+-....... .+....|++.++|-.
T Consensus 167 L~~i~~~egi~i~----~~~l~~i~~~~~gDl 194 (319)
T PLN03025 167 LMKVVEAEKVPYV----PEGLEAIIFTADGDM 194 (319)
T ss_pred HHHHHHHcCCCCC----HHHHHHHHHHcCCCH
Confidence 8877643222222 234667888888754
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.13 E-value=1.4e-05 Score=94.67 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=88.7
Q ss_pred CceecchhHHH---HHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 181 GEVCGRVDEKN---ELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~---~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
.+|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++.....+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~ 102 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKE 102 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHH
Confidence 46889888774 34444432 2455678999999999999999987653221
Q ss_pred -----CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEE--cCch--HHHHHhcCCCceeeeCCCCChHHHHHHHH
Q 002265 236 -----RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVT--TRNV--SVARMMGTTELDIISIEQLAEEECWSLFE 306 (945)
Q Consensus 236 -----~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiT--tr~~--~~~~~~~~~~~~~~~l~~l~~~~~~~lf~ 306 (945)
+++.++|||||+......++.+...+. .|+.++|+ |.+. .+....... ..++.+++++.++...++.
T Consensus 103 ~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR-~~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 103 RLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR-SRLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred HhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc-ccceecCCCCHHHHHHHHH
Confidence 356789999997655445555554443 35555553 3332 122222221 2479999999999999998
Q ss_pred HHhccCCC---CcchHHHHHHHHHHHHHcCCC
Q 002265 307 RLVFFDRS---SEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 307 ~~~~~~~~---~~~~~~~~~~~~~i~~~c~gl 335 (945)
+.+-.... .....--.+....|++.+.|-
T Consensus 179 ~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 179 RALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 76531000 000011133456677777764
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.13 E-value=4.3e-05 Score=78.94 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=79.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-----C-----------------CceEEEEEcCccCCC-cCChhh-HHhhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-----S-----------------RKKIFLVLDDVWDGN-CNKWEP-FFRCLK 262 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-----~-----------------~~~~LlvlDdv~~~~-~~~~~~-l~~~~~ 262 (945)
.+.+.|+|+.|+|||+|++++++..... + .+--++++||+.... ...|+. +...+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n 124 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYN 124 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHH
Confidence 3578999999999999999888754321 1 111278999996532 124443 222222
Q ss_pred CC-CCC-cEEEEEcCch---------HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHH
Q 002265 263 ND-LHG-GKILVTTRNV---------SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARN 331 (945)
Q Consensus 263 ~~-~~g-s~iiiTtr~~---------~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 331 (945)
.. ..| .++|+||+.. ++...+.... +++++++++++-.+++.+++....- .. -+++..-|+++
T Consensus 125 ~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~--~~~l~~~~~~~~~~~l~~~a~~~~~-~l---~~~v~~~L~~~ 198 (235)
T PRK08084 125 RILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ--IYKLQPLSDEEKLQALQLRARLRGF-EL---PEDVGRFLLKR 198 (235)
T ss_pred HHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc--eeeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHh
Confidence 11 123 3789998753 3444454433 8999999999999998886643221 11 14456667777
Q ss_pred cCCChhHHH
Q 002265 332 CKGLPLAAK 340 (945)
Q Consensus 332 c~glPLai~ 340 (945)
+.|-.-++.
T Consensus 199 ~~~d~r~l~ 207 (235)
T PRK08084 199 LDREMRTLF 207 (235)
T ss_pred hcCCHHHHH
Confidence 776544333
No 76
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=2.6e-05 Score=89.10 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=103.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|++..++.+...+... .-.+.+-++|+.|+||||+|+.+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE
Confidence 47899999999999888643 235688999999999999998876543210
Q ss_pred -------C------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCc
Q 002265 235 -------S------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTEL 288 (945)
Q Consensus 235 -------~------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~ 288 (945)
. +++-++|+|++.......+..+...+........+|++| ....+...+... .
T Consensus 92 eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR-c 170 (605)
T PRK05896 92 ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR-C 170 (605)
T ss_pred EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh-h
Confidence 0 334469999998765556677777776655566666555 434443332222 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVIGN 344 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 344 (945)
..+++.+++.++....+...+-....... .+.+..+++.++|-+ .|+..+-.
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 48999999999998888876643221112 234667888898854 45554443
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.8e-07 Score=93.42 Aligned_cols=159 Identities=17% Similarity=0.087 Sum_probs=68.9
Q ss_pred hcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCcc--CCCCCCCCCcCCcccccCCcCC---CCccccc
Q 002265 604 CELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPI--GISKLTSLRTLDRFVVGGGVDG---SNTCRLE 678 (945)
Q Consensus 604 ~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~---~~~~~l~ 678 (945)
+.+.+|+.|.|.|...-..+-..|.+-.+|+.|+++.|+.+..... -+.+++.|+.|++..|...... ....--+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 3344444444444332222333334444444444444433332211 1344444555554444322211 0112235
Q ss_pred ccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEE
Q 002265 679 SLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIV 758 (945)
Q Consensus 679 ~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 758 (945)
.|+.|+|+|+-..-.- .-+..-...|++|..|+++.+... .......+..++.|+.|+++
T Consensus 287 ~l~~LNlsG~rrnl~~-------sh~~tL~~rcp~l~~LDLSD~v~l-------------~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQK-------SHLSTLVRRCPNLVHLDLSDSVML-------------KNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred hhhhhhhhhhHhhhhh-------hHHHHHHHhCCceeeecccccccc-------------CchHHHHHHhcchheeeehh
Confidence 6777887776221100 011112346778888888766511 11333444455566666666
Q ss_pred eeCCCCCCccc---ccccCCcEEEEecC
Q 002265 759 FYGGNIFPKWL---TSLTNLRELRLVSC 783 (945)
Q Consensus 759 ~~~~~~lp~~~---~~l~~L~~L~L~~~ 783 (945)
.|.+.. |..+ .+.+.|++|++.+|
T Consensus 347 RCY~i~-p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDII-PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCC-hHHeeeeccCcceEEEEeccc
Confidence 554321 3222 23445555555544
No 78
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=3.4e-05 Score=84.50 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=104.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc----------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---------------------------- 232 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~---------------------------- 232 (945)
.+++|.++..+.+.+.+... .-.+.+-++|+.|+||+|+|..+.+..-
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 57999999999999888653 2356799999999999999965543210
Q ss_pred -----------------cc-----C--------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEE
Q 002265 233 -----------------VN-----S--------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKI 270 (945)
Q Consensus 233 -----------------~~-----~--------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~i 270 (945)
.+ . ++..++|+|++...+......+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 00 0 44568899999887766677777777765567777
Q ss_pred EEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 271 LVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 271 iiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
|++|.+.. +...+.. ....+.+.+++.++..+++...... ... .....++..++|.|+....+
T Consensus 175 IL~t~~~~~llpti~S-Rc~~i~l~~l~~~~i~~~L~~~~~~----~~~----~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRS-RCRKLRLRPLAPEDVIDALAAAGPD----LPD----DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhc-cceEEECCCCCHHHHHHHHHHhccc----CCH----HHHHHHHHHcCCCHHHHHHH
Confidence 77776653 3322222 2458999999999999999875421 111 11257899999999866554
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=1.8e-05 Score=91.36 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=100.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+.....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 47999999999999988743 235678999999999999998776532100
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~ 288 (945)
.+++-++|+|++...+......+...+.......++|++|.+. .+...+.. ..
T Consensus 92 EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS-RC 170 (709)
T PRK08691 92 EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS-RC 170 (709)
T ss_pred EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH-HH
Confidence 0455688999997765445566777776555566777776543 22222111 12
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
..+.+.+++.++..+.+.+.+-....... ......|++.++|-+.-
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRD 216 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHH
Confidence 36888899999999888876643322122 33567788888887643
No 80
>PF13173 AAA_14: AAA domain
Probab=98.09 E-value=8.6e-06 Score=75.50 Aligned_cols=92 Identities=24% Similarity=0.253 Sum_probs=66.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc--ccC---------------------------CceEEEEEcCccCCCcCChhhHH
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE--VNS---------------------------RKKIFLVLDDVWDGNCNKWEPFF 258 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~--~~~---------------------------~~~~LlvlDdv~~~~~~~~~~l~ 258 (945)
+++.|.|+.|+|||||+++++.+.. ... .++.+|+||+|... ..|....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~l 80 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDWEDAL 80 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccHHHHH
Confidence 5899999999999999998886543 110 25688999999765 4787777
Q ss_pred hhccCCCCCcEEEEEcCchHHHHHhc----CCCceeeeCCCCChHHH
Q 002265 259 RCLKNDLHGGKILVTTRNVSVARMMG----TTELDIISIEQLAEEEC 301 (945)
Q Consensus 259 ~~~~~~~~gs~iiiTtr~~~~~~~~~----~~~~~~~~l~~l~~~~~ 301 (945)
..+-+..+..+|++|+........-. ......+++.||+-.|.
T Consensus 81 k~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 77776666789999999876653311 11124688999987763
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=3.6e-05 Score=86.62 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=102.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.++||.+...+.+...+..+ .-.+.+-++|+.|+||||+|+.++.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 57899998888887777542 23458999999999999999888752100
Q ss_pred ------c------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcC-chHHHHHhcCCCc
Q 002265 234 ------N------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTR-NVSVARMMGTTEL 288 (945)
Q Consensus 234 ------~------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr-~~~~~~~~~~~~~ 288 (945)
. ++++-++|+|++...+....+.+...+....+..++|++|. ...+...+... .
T Consensus 89 eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR-c 167 (491)
T PRK14964 89 EIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR-C 167 (491)
T ss_pred EEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh-h
Confidence 0 04566899999987665567778888877667777776554 34454443322 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
..+++.+++.++..+.+.+.+.......+ .+....|++.++|-+-
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR 212 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMR 212 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 48999999999999988887653332222 3345678888888664
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=3e-05 Score=85.58 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=102.5
Q ss_pred CceecchhHHHHHHHHHhccccC-----CCCeEEEEEEecCCCcHHHHHHHHhcccccc---------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ-----QKGLHVISLVGLGGIGKTTLAQLAYNNDEVN--------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~-----~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--------------------- 234 (945)
.+++|.+..++.+.+.+...... ..-.+.+-++|+.|+|||++|+.+.......
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46889999999999988753210 0135678899999999999998875421100
Q ss_pred ----------C--------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHh
Q 002265 235 ----------S--------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMM 283 (945)
Q Consensus 235 ----------~--------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~ 283 (945)
. +++-++++|++..........+...+.....+..+|++|.+. .+...+
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 0 445578889998776556666777776656667666666654 444333
Q ss_pred cCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 284 GTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 284 ~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
... ...+.+.+++.++..+.+..... .. .+.+..++..++|-|.....+
T Consensus 165 rSR-c~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 165 RSR-CRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred Hhh-CeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 34899999999999988874321 11 234677899999998655433
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=7.5e-06 Score=88.65 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=33.8
Q ss_pred cCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccC
Q 002265 583 LIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIG 650 (945)
Q Consensus 583 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~ 650 (945)
+.++++|++++|.++.+|. -..+|++|.+++|..+..+|..+ ..+|++|++++|..+..+|..
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 4455555555555555551 12346666666666565555533 245666666666555555543
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.03 E-value=4.1e-05 Score=83.90 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=97.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|+++.++.+..++... ....+.++|..|+||||+|+.+.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHH
Confidence 46899999999999988542 33457999999999999999887642100
Q ss_pred ------C--CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCceeeeCCCCChHHHHHHH
Q 002265 235 ------S--RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 235 ------~--~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
. ..+-++++|++..........+...+......+++|+++.. ..+....... ...+++.+++.++....+
T Consensus 92 ~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~l~~~ei~~~l 170 (319)
T PRK00440 92 FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR-CAVFRFSPLKKEAVAERL 170 (319)
T ss_pred HHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH-hheeeeCCCCHHHHHHHH
Confidence 0 23458899998665433455566666555556777777643 2222222111 237899999999998888
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
...+........ .+....+++.++|-+--
T Consensus 171 ~~~~~~~~~~i~----~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 171 RYIAENEGIEIT----DDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 877643322122 33566778888887644
No 85
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=4.4e-06 Score=65.85 Aligned_cols=50 Identities=32% Similarity=0.502 Sum_probs=24.1
Q ss_pred cCCCcccccCc-cccccCcccccccccccccccCh-hhhcCCcccEEEecCC
Q 002265 568 LDPNSIREIPK-NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRC 617 (945)
Q Consensus 568 l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 617 (945)
+++|.+..+|. .+..+++|++|++++|.+..+|+ .+.++++|++|++++|
T Consensus 8 l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 8 LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44444444442 34445555555555555554432 3455555555555544
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=4.3e-05 Score=88.70 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=105.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.++||.+..++.+...+... .-.+.+-++|..|+||||+|+.+.+.....
T Consensus 16 ~divGQe~vv~~L~~~l~~~----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce
Confidence 57999999999888888642 234667899999999999998876543210
Q ss_pred -------C------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 235 -------S------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 235 -------~------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
. +++-++|+|++...+......+...+.......++|++|.+ ..+...+... .
T Consensus 92 eidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR-C 170 (647)
T PRK07994 92 EIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-C 170 (647)
T ss_pred eecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh-h
Confidence 0 56668999999887766777787777766666666665555 4443332222 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 342 (945)
..|.+++++.++..+.+.+.+-......+ ......|++.++|.+- |+..+
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48999999999999988876532221122 2345678899999765 44443
No 87
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=5.6e-05 Score=82.29 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=103.5
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc--------------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-------------------------- 233 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~-------------------------- 233 (945)
...++|.++..+.+...+... ...+.+.|+|+.|+||||+|+.+.+..-.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHc
Confidence 357999999999999988643 24568999999999999999754432210
Q ss_pred ---------------c-----C--------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE-
Q 002265 234 ---------------N-----S--------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV- 272 (945)
Q Consensus 234 ---------------~-----~--------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii- 272 (945)
. . +++-++|+|++...+......+...+.....+..+|+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 0 0 4566889999988766666777777766555555444
Q ss_pred EcCchHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 273 TTRNVSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 273 Ttr~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
|++...+....... ...+.+.+++.++..+++.+.... .. . ..+....+++.++|.|.....+
T Consensus 178 t~~~~~llptIrSR-c~~i~l~pl~~~~~~~~L~~~~~~-~~-~----~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 178 SHSSGRLLPTIRSR-CQPISLKPLDDDELKKALSHLGSS-QG-S----DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ECChhhccHHHHhh-ccEEEecCCCHHHHHHHHHHhhcc-cC-C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 44444443333222 348999999999999999874321 11 1 1234567899999999866544
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.3e-05 Score=87.20 Aligned_cols=150 Identities=16% Similarity=0.212 Sum_probs=102.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.++||.+..++.|..++... .-.+.+-++|..|+||||+|+.+.+....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCC
Confidence 46899888888888888653 23577899999999999999888433210
Q ss_pred --cC---------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHh
Q 002265 234 --NS---------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMM 283 (945)
Q Consensus 234 --~~---------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~ 283 (945)
.. ++.-++|+|+|+..+...+..+...+.......++|++|.+ ..+...+
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 00 34558899999887766777777777766566676655543 4444333
Q ss_pred cCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 284 GTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 284 ~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
... ...+++++++.++..+.+.+.+...+...+ .+....|++.++|-+--+
T Consensus 172 lSR-c~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 172 LSR-CLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred HHh-ceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 222 348999999999998888876643322222 234567888888866433
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.97 E-value=0.00011 Score=81.80 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=102.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+..++.+.+.+... .-.+.+-++|+.|+||||+|+.+......
T Consensus 14 ~~iig~~~~~~~l~~~~~~~----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 46899999999999988642 23467889999999999999776543210
Q ss_pred --------c----------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 234 --------N----------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 234 --------~----------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
. ++++-++|+|++..........+...+......+.+|++|.+.. +...+... .
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr-~ 168 (355)
T TIGR02397 90 EIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR-C 168 (355)
T ss_pred EeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh-e
Confidence 0 04455888999866544456667777765556677777765543 33333222 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
..+++.++++++..+.+...+-......+ .+.+..+++.++|-|..+...
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 47899999999988888876643221111 346677888999988655443
No 90
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.97 E-value=0.00018 Score=72.14 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=68.7
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------- 235 (945)
.-.+++|.|...+.+++-...=-. +....-+-+||..|+|||++++++.+......
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~-G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~ 103 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQ-GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD 103 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHc-CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc
Confidence 346799999998887664321111 12345677899999999999999988765433
Q ss_pred -CceEEEEEcCccCC-CcCChhhHHhhccCC----CCCcEEEEEcCchHHHHH
Q 002265 236 -RKKIFLVLDDVWDG-NCNKWEPFFRCLKND----LHGGKILVTTRNVSVARM 282 (945)
Q Consensus 236 -~~~~LlvlDdv~~~-~~~~~~~l~~~~~~~----~~gs~iiiTtr~~~~~~~ 282 (945)
..||+|++||..-. .......+...+..+ .....|..||..+++...
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 68999999999643 233455666666533 234456667766665443
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=2e-05 Score=87.47 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=93.5
Q ss_pred cCCceecchhHHHHHHHHHhccccC--------CCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQ--------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~--------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------- 235 (945)
...++.|+++.++++.+.+...-.. -...+-+.++|++|+|||++|+++++.....+
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence 3457999999999998877422110 12245689999999999999999987654322
Q ss_pred --------------CceEEEEEcCccCCCc-----------C---ChhhHHhhccC--CCCCcEEEEEcCchHHHHH-hc
Q 002265 236 --------------RKKIFLVLDDVWDGNC-----------N---KWEPFFRCLKN--DLHGGKILVTTRNVSVARM-MG 284 (945)
Q Consensus 236 --------------~~~~LlvlDdv~~~~~-----------~---~~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~-~~ 284 (945)
....+|++|+++.... . .+..+...+.. ...+.+||.||........ +.
T Consensus 200 ~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~ 279 (364)
T TIGR01242 200 GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALL 279 (364)
T ss_pred HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhc
Confidence 3457999999965310 0 11122222221 1246678888876432221 11
Q ss_pred C--CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 285 T--TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 285 ~--~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
. .-+..+.+...+.++..++|..++....-. ..-. ...+++.+.|..
T Consensus 280 r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 280 RPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 0 113478999999999999999877533211 1112 345667776654
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.3e-07 Score=92.72 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=77.9
Q ss_pred hcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcc----cccccCCcEEEE
Q 002265 705 RSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKW----LTSLTNLRELRL 780 (945)
Q Consensus 705 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~L 780 (945)
..-+.+|+.|.+|+++|+.++.. ....... .--++|..|+|+||...-.-+- ...+++|..|||
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~----------~Vtv~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTE----------KVTVAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccch----------hhhHHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 34567889999999999974321 0111111 2236899999999864322222 237899999999
Q ss_pred ecCCCCCc--CCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcc
Q 002265 781 VSCVDCEH--LPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLD 850 (945)
Q Consensus 781 ~~~~~~~~--l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 850 (945)
++|..++. +..+.+++ |++|.++.|..+ ++..+.. +...|+|.+|++.||-
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~-----------------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE-----------------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee-----------------eccCcceEEEEecccc
Confidence 99987764 23366789 999999999743 2333332 3478999999999874
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.95 E-value=9.7e-05 Score=73.74 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=86.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc----------------------------------------------------
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN---------------------------------------------------- 234 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------------- 234 (945)
.+.+.++|+.|+||||+|+.+.+.....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 4689999999999999997775543210
Q ss_pred CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCC
Q 002265 235 SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDR 313 (945)
Q Consensus 235 ~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~ 313 (945)
.+.+-++|+|++.......++.+...+....+.+.+|++|++. .+...+... ...+++.+++.++..+.+....
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr-~~~~~~~~~~~~~~~~~l~~~g---- 168 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR-CQVLPFPPLSEEALLQWLIRQG---- 168 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh-cEEeeCCCCCHHHHHHHHHHcC----
Confidence 0556688999997766556777888887766677777777653 333333322 3589999999999988887761
Q ss_pred CCcchHHHHHHHHHHHHHcCCChh
Q 002265 314 SSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
.. .+.+..+++.++|.|.
T Consensus 169 --i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred --CC----HHHHHHHHHHcCCCcc
Confidence 11 3457889999999875
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=6.4e-06 Score=64.93 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=49.8
Q ss_pred CcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCC
Q 002265 584 IHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGET 641 (945)
Q Consensus 584 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 641 (945)
++|++|++++|.+..+|. .+..+++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 478999999999998884 67899999999999887 777775 6789999999999988
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=6.4e-05 Score=86.09 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=100.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.++||.+..++.+..++... .-.+.+-++|+.|+||||+|+.+.+.....
T Consensus 16 ~divGq~~v~~~L~~~~~~~----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 46999999999999998643 235578899999999999998877643210
Q ss_pred ------C-------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 235 ------S-------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 235 ------~-------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
. ++.-++|+|+|...+.+....+...+......+++|++|.+ ..+...+... .
T Consensus 92 eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR-c 170 (509)
T PRK14958 92 EVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR-C 170 (509)
T ss_pred EEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH-h
Confidence 0 45568889999887666777787777776667777766544 3333222221 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
..+++++++.++..+.+.+.+-....... ......|++.++|-+--
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRD 216 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHH
Confidence 37899999999877776655532222122 22355678888886643
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=7.2e-05 Score=83.78 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=102.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+...+.+..++... .-.+.+-++|+.|+||||+|+.+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhC----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 47899998888888888642 23467889999999999999876653311
Q ss_pred ---------------c-----------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHH
Q 002265 234 ---------------N-----------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVA 280 (945)
Q Consensus 234 ---------------~-----------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~ 280 (945)
. ++++-++|+|++.......++.+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 0 0456688999998765557778888887666677766555 444444
Q ss_pred HHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHH
Q 002265 281 RMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKV 341 (945)
Q Consensus 281 ~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 341 (945)
..+... ...+++.++++++..+.+...+-....... .+.+..+++.++|-+- |+..
T Consensus 172 ~tl~sR-~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 172 ATIASR-CQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 333221 237899999999988888776532211111 3456788899999664 4443
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=9.3e-05 Score=85.15 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=106.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..++.|...+... .-...+-++|+.|+||||+|+.+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 46889888888888877542 235678899999999999998776554311
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
.+++-+||+|++.......+..+...+........+|++|.. ..+...+... .
T Consensus 92 eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR-c 170 (624)
T PRK14959 92 EIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR-C 170 (624)
T ss_pred EEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh-h
Confidence 045568999999876655667777777654455666665554 4444332221 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC-hhHHHHHHHHh
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL-PLAAKVIGNLL 346 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~~L 346 (945)
..+++.+++.++..+.+...+........ .+.+..|++.++|- -.|+..+..++
T Consensus 171 q~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 171 QHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 37899999999999888876643222122 34566788888884 56777766544
No 98
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.92 E-value=2.2e-05 Score=74.84 Aligned_cols=90 Identities=21% Similarity=0.154 Sum_probs=60.9
Q ss_pred ecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc-----------------------------
Q 002265 184 CGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN----------------------------- 234 (945)
Q Consensus 184 vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~----------------------------- 234 (945)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+.+++.....
T Consensus 1 ~~~~~~~~~i~~~~~~~-----~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 1 VGQEEAIEALREALELP-----PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred CchHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 47788888888887642 34678999999999999999998764110
Q ss_pred ------CCceEEEEEcCccCCCcCChhhHHhhccCC------CCCcEEEEEcCchH
Q 002265 235 ------SRKKIFLVLDDVWDGNCNKWEPFFRCLKND------LHGGKILVTTRNVS 278 (945)
Q Consensus 235 ------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~------~~gs~iiiTtr~~~ 278 (945)
..+..++|+||++.........+...+... ..+..||+||....
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 035689999999854212223333333322 35778888887643
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.89 E-value=4.3e-05 Score=78.87 Aligned_cols=99 Identities=26% Similarity=0.371 Sum_probs=69.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccC------------------------------CceEEEEEcCccCCCcCCh
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------------RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------------~~~~LlvlDdv~~~~~~~~ 254 (945)
+....+.+||++|+||||||+.+.+..+... ++|..|++|.|..-+..+-
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ 239 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ 239 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh
Confidence 4577889999999999999999987654331 7899999999975433333
Q ss_pred hhHHhhccCCCCCcEEEE--EcCchHH---HHHhcCCCceeeeCCCCChHHHHHHHHHH
Q 002265 255 EPFFRCLKNDLHGGKILV--TTRNVSV---ARMMGTTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 255 ~~l~~~~~~~~~gs~iii--Ttr~~~~---~~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
+. ++|---+|.-++| ||-+... ...+... .++-++.|..++-..++.+.
T Consensus 240 D~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC--~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 240 DT---FLPHVENGDITLIGATTENPSFQLNAALLSRC--RVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hc---ccceeccCceEEEecccCCCccchhHHHHhcc--ceeEeccCCHHHHHHHHHHH
Confidence 33 3444446776666 6665431 2222333 38999999999999998874
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=9.5e-05 Score=85.35 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=101.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..++.+..++... .-.+.+-++|+.|+||||+|+.+.+.....
T Consensus 16 ~divGq~~v~~~L~~~i~~~----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 46899999999998888642 234677899999999999998875443110
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
.+++-++|+|++..........+...+......+.+|++|.+ ..+...+... .
T Consensus 92 ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR-c 170 (527)
T PRK14969 92 EVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR-C 170 (527)
T ss_pred EeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH-H
Confidence 045668999999876655566777777766566776666644 3332221111 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 342 (945)
..+++++++.++..+.+.+.+-....... ......|++.++|.+- |+..+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 37899999999998888776532221111 2345678888888664 44443
No 101
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.1e-05 Score=58.06 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=28.3
Q ss_pred CcccccccccccccccChhhhcCCcccEEEecCCCCccccC
Q 002265 584 IHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 584 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
++|++|++++|.|+.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 36777888888888777777888888888888776 55554
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.85 E-value=0.0013 Score=77.49 Aligned_cols=45 Identities=36% Similarity=0.451 Sum_probs=36.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
++++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~-----~~~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS-----PFPQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred HhceeCcHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999988877743 23457999999999999999988643
No 103
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.85 E-value=1.2e-06 Score=97.86 Aligned_cols=117 Identities=26% Similarity=0.198 Sum_probs=74.8
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
.++|.+..+..++.-++.|+.|+|++|++...- .+..|++|++|||+.|. +..+|.--..-.+|..|++++| .+..+
T Consensus 171 fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN-~l~tL 247 (1096)
T KOG1859|consen 171 FSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN-ALTTL 247 (1096)
T ss_pred cchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeeccc-HHHhh
Confidence 555566666666777777888888888877664 67777888888888776 7777752111123777777776 44444
Q ss_pred ccCCCCCCCCCcCCcccccCCcCC--CCcccccccccCCCCCe
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDG--SNTCRLESLKNLQLRGK 688 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~--~~~~~l~~L~~L~L~~~ 688 (945)
.+|.+|++|+.|++.+|-..... .....+..|..|.|.|+
T Consensus 248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 46777888888887776543321 12234555666666654
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=1.7e-06 Score=98.03 Aligned_cols=185 Identities=29% Similarity=0.287 Sum_probs=96.0
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
+..+.+.++-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+.. +..++.|+.|++.+| .+..+
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~ 155 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDI 155 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhc
Confidence 334444443344566666777777777766665556666777777777665 555543 566666777777666 34333
Q ss_pred ccCCCCCCCCCcCCcccccCCcCCCC-cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccC
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDGSN-TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVD 726 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 726 (945)
+ ++..+++|+.+++.++........ ...+..|+.+.+.++ .+..... +..+..+..+++..|.+..
T Consensus 156 ~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~-----------~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 156 S-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG-----------LDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred c-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc-----------hHHHHHHHHhhccccccee
Confidence 2 455566666666655554432221 123344444444432 1111110 1111112222333333211
Q ss_pred CCCCccccCchhHHHHHhcCCCCC--CccEEEEEeeCCCCCCcccccccCCcEEEEecCC
Q 002265 727 GEGEEGRRKNEKDKQLLEALQPPL--NLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 784 (945)
++.+.... .|+.+++.+++....|..+..+.++..|++.++.
T Consensus 223 ----------------~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 223 ----------------LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ----------------ccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 11122222 2777778777776655666677888888887764
No 105
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.84 E-value=1.6e-06 Score=89.24 Aligned_cols=226 Identities=24% Similarity=0.241 Sum_probs=126.8
Q ss_pred HHhccCCccceEeeccccccccccccCCCccc-----ccCccccccCccccccccccc----ccccChh-------hhcC
Q 002265 543 ELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR-----EIPKNVRKLIHLKYLNLSELG----IEILPET-------LCEL 606 (945)
Q Consensus 543 ~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~----i~~lp~~-------i~~L 606 (945)
.....+..+..++ |++|.+. .+...+.+.++|+.-++++-. ...+|+. +-.+
T Consensus 24 ~~~~~~~s~~~l~------------lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 24 EELEPMDSLTKLD------------LSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred HHhcccCceEEEe------------ccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC
Confidence 3466778888888 4444433 344556667788888887632 2245543 3345
Q ss_pred CcccEEEecCCCCccccCcc----cccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccc-cccc
Q 002265 607 YNLQKLDIRRCRNLRELPAG----IGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRL-ESLK 681 (945)
Q Consensus 607 ~~L~~L~L~~~~~l~~lP~~----i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l-~~L~ 681 (945)
++|++||||.|-.-..-++. +.++..|++|.|.+| +.+... ...+ ..|.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~------------------------Glg~~a--g~~l~~al~ 145 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC------------------------GLGPEA--GGRLGRALF 145 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC------------------------CCChhH--HHHHHHHHH
Confidence 67777887777633223322 234555666666555 221100 0010 0111
Q ss_pred cCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeC
Q 002265 682 NLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYG 761 (945)
Q Consensus 682 ~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 761 (945)
.|. ........+.|+.+....|.+-.. ........++.++.|+.+.+..|.
T Consensus 146 ~l~-------------------~~kk~~~~~~Lrv~i~~rNrlen~----------ga~~~A~~~~~~~~leevr~~qN~ 196 (382)
T KOG1909|consen 146 ELA-------------------VNKKAASKPKLRVFICGRNRLENG----------GATALAEAFQSHPTLEEVRLSQNG 196 (382)
T ss_pred HHH-------------------HHhccCCCcceEEEEeeccccccc----------cHHHHHHHHHhccccceEEEeccc
Confidence 111 112244556788888877774322 134455667777889998888876
Q ss_pred CCC-----CCcccccccCCcEEEEecCCCCCc----C-CCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCC
Q 002265 762 GNI-----FPKWLTSLTNLRELRLVSCVDCEH----L-PPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSS 830 (945)
Q Consensus 762 ~~~-----lp~~~~~l~~L~~L~L~~~~~~~~----l-~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 830 (945)
+.. +-..+.++++|+.|+|.+|..... + ..+..+| |++|++++|- |+.-+..-....
T Consensus 197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a----------- 264 (382)
T KOG1909|consen 197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA----------- 264 (382)
T ss_pred ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH-----------
Confidence 532 122344789999999998864332 1 1144567 8888988885 433322111100
Q ss_pred CCCcCcCCCccceeeccCcc
Q 002265 831 SSSSVTAFPKLKSLEIKGLD 850 (945)
Q Consensus 831 ~~~~~~~~~~L~~L~L~~~~ 850 (945)
--..+|+|+.|.+.++.
T Consensus 265 ---l~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 265 ---LKESAPSLEVLELAGNE 281 (382)
T ss_pred ---HhccCCCCceeccCcch
Confidence 01258899999998864
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=97.83 E-value=0.00028 Score=72.86 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=78.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC----------------------CceEEEEEcCccCCC-cCChhh-HHhhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------RKKIFLVLDDVWDGN-CNKWEP-FFRCLK 262 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------~~~~LlvlDdv~~~~-~~~~~~-l~~~~~ 262 (945)
...+.|||..|+|||+|++++++...... .+-=++|+||+.... ...|+. +...+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 36789999999999999999876432111 111268899996432 234433 444332
Q ss_pred C-CCCCcEEEEEcCchH---------HHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHc
Q 002265 263 N-DLHGGKILVTTRNVS---------VARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNC 332 (945)
Q Consensus 263 ~-~~~gs~iiiTtr~~~---------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 332 (945)
. ...|..||+|++... +...+... .++++++++.++-.+++..++....- ..+ .++..-+++++
T Consensus 125 ~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il~~ka~~~~~-~l~---~ev~~~L~~~~ 198 (234)
T PRK05642 125 RLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRALQLRASRRGL-HLT---DEVGHFILTRG 198 (234)
T ss_pred HHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhc
Confidence 2 124667899887532 22223332 37999999999999999866643221 111 35666777777
Q ss_pred CCChhHHH
Q 002265 333 KGLPLAAK 340 (945)
Q Consensus 333 ~glPLai~ 340 (945)
.|-.-++.
T Consensus 199 ~~d~r~l~ 206 (234)
T PRK05642 199 TRSMSALF 206 (234)
T ss_pred CCCHHHHH
Confidence 76544443
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00022 Score=83.17 Aligned_cols=153 Identities=15% Similarity=0.199 Sum_probs=101.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc--------------c------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------N------------ 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------~------------ 234 (945)
.+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+.+.... .
T Consensus 16 ~eivGQe~i~~~L~~~i~~~----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 47899999999888887642 23567899999999999999776543311 0
Q ss_pred ---------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHH
Q 002265 235 ---------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVA 280 (945)
Q Consensus 235 ---------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~ 280 (945)
++++-++|+|++........+.+...+......+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0445578999997765556677777777665566655544 444454
Q ss_pred HHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC-hhHHHHH
Q 002265 281 RMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL-PLAAKVI 342 (945)
Q Consensus 281 ~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 342 (945)
..+... ...+++.+++.++....+...+-....... .+.+..+++.++|- -.|+..+
T Consensus 172 ~TI~SR-c~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 172 ATIASR-CQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHHhh-ceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 433322 348999999999988877765532221112 34567788999984 4444433
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00019 Score=83.51 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=104.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc-----c---------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-----N--------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~-----~--------------------- 234 (945)
.+++|.+..++.+...+... .-.+.+-++|+.|+||||+|+.+.+.... .
T Consensus 24 ~dliGq~~~v~~L~~~~~~g----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCC
Confidence 47999999999999988643 23567899999999999999887654210 0
Q ss_pred ------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHh
Q 002265 235 ------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMM 283 (945)
Q Consensus 235 ------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~ 283 (945)
+.++-++|+|++...+....+.+...+......+++|++| ....+...+
T Consensus 100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI 179 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTV 179 (598)
T ss_pred CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHH
Confidence 0345578999997766556677777777666677776655 434444333
Q ss_pred cCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 284 GTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 284 ~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
... ...+++..++.++....+.+.+-....... .+....|++.++|-+.-+.
T Consensus 180 ~SR-cq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 180 LSR-CQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGL 231 (598)
T ss_pred Hhh-eeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 322 348999999999999888877643222122 2456778888888775443
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00023 Score=83.76 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=103.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+..++.+..++... .-.+.+-++|+.|+||||+|+.+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~ 91 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDV 91 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeE
Confidence 47999999999998888642 23467789999999999999887643210
Q ss_pred ------c-------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCC
Q 002265 234 ------N-------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTE 287 (945)
Q Consensus 234 ------~-------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~ 287 (945)
. +.++-++|+|++.....+..+.+...+......+.+|++|.+ ..+...+...
T Consensus 92 ~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR- 170 (585)
T PRK14950 92 IEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR- 170 (585)
T ss_pred EEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc-
Confidence 0 045668999999766545566777777665566676666544 3343333222
Q ss_pred ceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHH
Q 002265 288 LDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKV 341 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 341 (945)
...+++..++.++....+.+.+........ .+.+..+++.++|-+..+..
T Consensus 171 ~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 247889999999988888877643222112 34567888999997754443
No 110
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=5.4e-07 Score=94.56 Aligned_cols=264 Identities=21% Similarity=0.228 Sum_probs=158.6
Q ss_pred Cccccccccccc---ccccChhhhcCCcccEEEecCCCCccc--cCcccccccCCCeeecCCCCCCccCccCCCCCCCCC
Q 002265 584 IHLKYLNLSELG---IEILPETLCELYNLQKLDIRRCRNLRE--LPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLR 658 (945)
Q Consensus 584 ~~L~~L~L~~~~---i~~lp~~i~~L~~L~~L~L~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 658 (945)
..|+.|+++++. ...+-....+++++++|++.+|.++.. +-.--..+.+|++|++..|..+...- |+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~--------Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS--------LK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH--------HH
Confidence 357888888876 234555567889999999999986532 22222467889999888875444321 11
Q ss_pred cCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchh
Q 002265 659 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEK 738 (945)
Q Consensus 659 ~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 738 (945)
. ....+++|++|+++.|-.|.. ..+.....++..++.+.+.++.- ..
T Consensus 210 ~-------------la~gC~kL~~lNlSwc~qi~~--------~gv~~~~rG~~~l~~~~~kGC~e------------~~ 256 (483)
T KOG4341|consen 210 Y-------------LAEGCRKLKYLNLSWCPQISG--------NGVQALQRGCKELEKLSLKGCLE------------LE 256 (483)
T ss_pred H-------------HHHhhhhHHHhhhccCchhhc--------CcchHHhccchhhhhhhhccccc------------cc
Confidence 1 134578888888887654443 11122234455555555554430 01
Q ss_pred HHHHHhcCCCCCCccEEEEEeeCCCC-CCccc--ccccCCcEEEEecCCCCCcCC--CCCc-cc-cceEeeccccCceEe
Q 002265 739 DKQLLEALQPPLNLEEFGIVFYGGNI-FPKWL--TSLTNLRELRLVSCVDCEHLP--PLGK-LA-LEKLELGNLKSVKRL 811 (945)
Q Consensus 739 ~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~--~~l~~L~~L~L~~~~~~~~l~--~l~~-l~-L~~L~l~~~~~L~~l 811 (945)
...+...-....-+.++++..|.... ..-|. ..+..|+.|+.++|......+ .++. .+ |+.|.+..|..+...
T Consensus 257 le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 257 LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 11121122233445555554553211 11111 257889999999988765433 2443 45 999999999876555
Q ss_pred CccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeec
Q 002265 812 GNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIW 891 (945)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~ 891 (945)
+...++ .+++.|+.+++.+|.....- .+-+ --.++|.|+.|.|+
T Consensus 337 ~ft~l~------------------rn~~~Le~l~~e~~~~~~d~-----------tL~s-------ls~~C~~lr~lsls 380 (483)
T KOG4341|consen 337 GFTMLG------------------RNCPHLERLDLEECGLITDG-----------TLAS-------LSRNCPRLRVLSLS 380 (483)
T ss_pred hhhhhh------------------cCChhhhhhcccccceehhh-----------hHhh-------hccCCchhccCChh
Confidence 544433 26788999988887533211 1111 11246789999999
Q ss_pred cCcCCCCC-----CcCCCCCCCccEEEEeCCcchHHHh
Q 002265 892 YCPKLKVL-----PDYLLRTTTLQKLTIWGCPLLENRY 924 (945)
Q Consensus 892 ~c~~L~~l-----p~~~~~l~~L~~L~l~~c~~L~~~~ 924 (945)
+|..+++. ...-..+..|+.+.+.+||.+++..
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 99877764 3444467889999999999987664
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00026 Score=80.66 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=104.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc----cc----------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE----VN---------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~----~~---------------------- 234 (945)
.+++|.+...+.+...+... .-.++.-++|+.|+||||+|+.+.+..- ..
T Consensus 14 deiiGqe~v~~~L~~~I~~g----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 46899999999998888642 2356778999999999999987654321 00
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~ 288 (945)
.+++-++|+|++.....+....+...+......+++|++|.+. .+....... .
T Consensus 90 eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR-c 168 (535)
T PRK08451 90 EMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR-T 168 (535)
T ss_pred EeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh-c
Confidence 0455688999998776666777877777666677777776653 232222222 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
..+++.+++.++..+.+.+.+-..+.... .+.+..|++.++|-+--+.
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTL 216 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHH
Confidence 48999999999998888776543222122 3456788899999774443
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=8.2e-05 Score=81.27 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=80.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~----~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~ 96 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG----RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVS 96 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC----CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhc
Confidence 57899999999999988642 235678889999999999999987653210
Q ss_pred -CCceEEEEEcCccCC-CcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHHHH
Q 002265 235 -SRKKIFLVLDDVWDG-NCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLFER 307 (945)
Q Consensus 235 -~~~~~LlvlDdv~~~-~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf~~ 307 (945)
...+-++|+|++... ..+..+.+...+.....++++|+||.... +...+... ...+.+...+.++..+++..
T Consensus 97 ~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR-~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 97 LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR-CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh-ceEEEeCCCCHHHHHHHHHH
Confidence 024567899999754 22222334444555456778888887543 22222211 23677777888887766544
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00027 Score=81.82 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=105.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.|..++... .-.+.+.++|+.|+||||+|+.+.+.....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 47899999999999988642 235678899999999999998877542200
Q ss_pred ---------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCC
Q 002265 235 ---------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTT 286 (945)
Q Consensus 235 ---------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~ 286 (945)
.+++-++|+|++...+......+...+........+|++| ....+...+...
T Consensus 89 vieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 89 VVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh
Confidence 0445588999998776667777877787766666666554 444444443322
Q ss_pred CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHHHHH
Q 002265 287 ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVIGNL 345 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~ 345 (945)
...+++..++.++..+.+.+.+-....... ......|++.++|-+ -|+..+-.+
T Consensus 169 -c~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 169 -THHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred -ceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 348999999999988888776543222122 234566788888865 455554443
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00023 Score=79.38 Aligned_cols=148 Identities=15% Similarity=0.221 Sum_probs=97.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc--------------------c------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------N------ 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------~------ 234 (945)
.+++|.+...+.+...+... .-.+.+-++|+.|+||||+|+.+.+.... .
T Consensus 17 ~~iig~~~~~~~l~~~i~~~----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 46899999999999888642 23468889999999999999887664321 0
Q ss_pred -------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCceeeeCCCCChHH
Q 002265 235 -------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 235 -------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
++++-++++|++.......+..+...+......+.+|++| ....+....... ..++++.++++++
T Consensus 93 i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr-~~~v~~~~~~~~~ 171 (367)
T PRK14970 93 IRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR-CQIFDFKRITIKD 171 (367)
T ss_pred HHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc-ceeEecCCccHHH
Confidence 0345589999997654445666666665544455666555 333333332222 2479999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
....+...+........ .+....++..++|-+-
T Consensus 172 l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 172 IKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 98888876643222112 3456677778887543
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.80 E-value=0.00017 Score=73.51 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=81.6
Q ss_pred ceecchh-HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 182 EVCGRVD-EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 182 ~~vgr~~-~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
-++|-.. ..-.....+.... +.....+-|||..|+|||.|.+++++......
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~--~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~ 87 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP--GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGE 87 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST--TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTS
T ss_pred CCcCCcHHHHHHHHHHHHhcC--CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHccc
Confidence 3456432 2333444444332 22345688999999999999999988754321
Q ss_pred --------CceEEEEEcCccCCCcC-Chhh-HHhhccCC-CCCcEEEEEcCch---------HHHHHhcCCCceeeeCCC
Q 002265 236 --------RKKIFLVLDDVWDGNCN-KWEP-FFRCLKND-LHGGKILVTTRNV---------SVARMMGTTELDIISIEQ 295 (945)
Q Consensus 236 --------~~~~LlvlDdv~~~~~~-~~~~-l~~~~~~~-~~gs~iiiTtr~~---------~~~~~~~~~~~~~~~l~~ 295 (945)
..-=+|++|||+..... .|.. +...+... ..|.+||+|++.. ++...+... -++++++
T Consensus 88 ~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--l~~~l~~ 165 (219)
T PF00308_consen 88 IEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--LVVELQP 165 (219)
T ss_dssp HHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS--EEEEE--
T ss_pred chhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc--chhhcCC
Confidence 23348899999764321 2222 22222211 3467899999542 344445443 3899999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 296 LAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 296 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
+++++..+++.+++....-.- -++++.-+++++.+-.
T Consensus 166 pd~~~r~~il~~~a~~~~~~l----~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKERGIEL----PEEVIEYLARRFRRDV 202 (219)
T ss_dssp --HHHHHHHHHHHHHHTT--S-----HHHHHHHHHHTTSSH
T ss_pred CCHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHhhcCCH
Confidence 999999999998885433221 2344555666555433
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.79 E-value=0.00013 Score=74.23 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=106.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
.+++|.+..++-+...+.. ........+|++|.|||+-|++++...-...
T Consensus 36 de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 4688988888888888765 2567899999999999999887765432210
Q ss_pred ----------------Cce-EEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE-EcCchHHHHHhcCCCceeeeCCCCC
Q 002265 236 ----------------RKK-IFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV-TTRNVSVARMMGTTELDIISIEQLA 297 (945)
Q Consensus 236 ----------------~~~-~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii-Ttr~~~~~~~~~~~~~~~~~l~~l~ 297 (945)
... -.||||+++....+.|..+.....+....++.|+ |+--..+...+... ..-|..++|.
T Consensus 111 ~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR-C~KfrFk~L~ 189 (346)
T KOG0989|consen 111 NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR-CQKFRFKKLK 189 (346)
T ss_pred CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh-HHHhcCCCcc
Confidence 111 4788999998888899999988888776777554 44333333332221 2368899999
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHHHHH
Q 002265 298 EEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAKVIG 343 (945)
Q Consensus 298 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 343 (945)
+++..+-+...+-..+...+. +..+.|++.++| |--|+.++-
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 999998888887554443333 345668888887 455555553
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00033 Score=82.04 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=102.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+..++.+...+... .-.+.+-++|+.|+||||+|+.++...-.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 46899999999999888643 23567889999999999999887543210
Q ss_pred -------c--------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE-EcCchHHHHHhcCCCceee
Q 002265 234 -------N--------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV-TTRNVSVARMMGTTELDII 291 (945)
Q Consensus 234 -------~--------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii-Ttr~~~~~~~~~~~~~~~~ 291 (945)
. .+++-++|+|++.......+..+...+........+|+ |++...+....... ...+
T Consensus 94 aasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR-cq~i 172 (725)
T PRK07133 94 AASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR-VQRF 172 (725)
T ss_pred ccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh-ceeE
Confidence 0 04556889999987665667777777766555555554 44445554333222 2489
Q ss_pred eCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHHH
Q 002265 292 SIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVIG 343 (945)
Q Consensus 292 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 343 (945)
++.+++.++..+.+...+-....... ...+..+++.++|-+ .|+..+.
T Consensus 173 eF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 173 NFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999998888775532221111 234667888998855 4554443
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00028 Score=85.00 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=102.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc-----------------------C--
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-----------------------S-- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-----------------------~-- 235 (945)
.++||.+..++.|...+... .-.+.+.++|+.|+||||+|+.+.+..... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 46899999999998888643 234678999999999999998775544210 0
Q ss_pred ----------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCC
Q 002265 236 ----------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTT 286 (945)
Q Consensus 236 ----------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~ 286 (945)
+++-++|||++.......+..|+..+......+.+|++|.+ ..+...+...
T Consensus 91 v~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR 170 (824)
T PRK07764 91 VTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR 170 (824)
T ss_pred EEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 34447889999887777777888888876667776665543 3444433332
Q ss_pred CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 287 ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
...|++..++.++..+.+.+.+-....... ......|++.++|-+.
T Consensus 171 -c~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR 216 (824)
T PRK07764 171 -THHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVR 216 (824)
T ss_pred -eeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 358999999999988888775532221111 2345678888998663
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.75 E-value=6.8e-05 Score=83.55 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=82.9
Q ss_pred CCceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
..++.|+++.++++.+.+...-. +-...+-|.++|++|+|||++|+++++.....+
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~ 209 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEG 209 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccch
Confidence 35789999999999887632110 112345689999999999999999987644322
Q ss_pred -------------CceEEEEEcCccCCC-----------cCChhhHHhhcc---C--CCCCcEEEEEcCchHHHHH-hcC
Q 002265 236 -------------RKKIFLVLDDVWDGN-----------CNKWEPFFRCLK---N--DLHGGKILVTTRNVSVARM-MGT 285 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~-----------~~~~~~l~~~~~---~--~~~gs~iiiTtr~~~~~~~-~~~ 285 (945)
....+|++|+++... ......+...+. . ...+..||.||...+.... +-.
T Consensus 210 ~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allR 289 (389)
T PRK03992 210 ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILR 289 (389)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcC
Confidence 345789999996421 001112222221 1 1235577778776443222 111
Q ss_pred --CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 286 --TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 286 --~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
.-+..+++.+.+.++..++|..+..
T Consensus 290 pgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 290 PGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CccCceEEEECCCCHHHHHHHHHHHhc
Confidence 1134799999999999999988764
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00035 Score=79.09 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=100.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..++.+...+... .-.+.+-++|+.|+||||+|+.+.+.....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 47899999999998888642 224678899999999999998775432100
Q ss_pred ---------C-----------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcC-chHHHHHhcCCC
Q 002265 235 ---------S-----------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTR-NVSVARMMGTTE 287 (945)
Q Consensus 235 ---------~-----------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr-~~~~~~~~~~~~ 287 (945)
. +++-++|+|++........+.+...+........+|++|. ...+...+...
T Consensus 93 ~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR- 171 (451)
T PRK06305 93 LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR- 171 (451)
T ss_pred EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh-
Confidence 0 4566789999876544455667777766555666766654 33343333222
Q ss_pred ceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHH
Q 002265 288 LDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVI 342 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 342 (945)
...+++.++++++..+.+...+-....... .+.+..+++.++|-+ .|+..+
T Consensus 172 c~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 172 CQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 347999999999988888776532221111 345677888888854 444444
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00063 Score=77.61 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=99.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+...+.+...+.... -.++..++|+.|+||||+|+.++.....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 468999999999998886532 3567789999999999999886553210
Q ss_pred -------c-----------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCc
Q 002265 234 -------N-----------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTEL 288 (945)
Q Consensus 234 -------~-----------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~ 288 (945)
. .+++-++|+|++........+.+...+........+|++| +...+....... .
T Consensus 92 eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR-c 170 (486)
T PRK14953 92 EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR-C 170 (486)
T ss_pred EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh-c
Confidence 0 0456689999997665455666777776655566665555 433443332222 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
..+.+.+++.++....+...+-......+ .+.+..+++.++|-+-.+
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDA 217 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 47999999999988888776532222122 234566778888865433
No 122
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.70 E-value=0.00037 Score=73.51 Aligned_cols=129 Identities=14% Similarity=0.108 Sum_probs=73.4
Q ss_pred ceecchhHHHHHHHH---Hhcc-------ccCCCCeEEEEEEecCCCcHHHHHHHHhccccc------c-----------
Q 002265 182 EVCGRVDEKNELLSK---LCES-------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV------N----------- 234 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~---l~~~-------~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~------~----------- 234 (945)
+++|.+..++++.+. .... -...+...-+.++|++|+||||+|+.+++.... .
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 578888776665433 2110 001234556889999999999999988653210 0
Q ss_pred ----------------CCceEEEEEcCccCCCc--------CChhhHHhhccCCCCCcEEEEEcCchHHHH------Hhc
Q 002265 235 ----------------SRKKIFLVLDDVWDGNC--------NKWEPFFRCLKNDLHGGKILVTTRNVSVAR------MMG 284 (945)
Q Consensus 235 ----------------~~~~~LlvlDdv~~~~~--------~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~------~~~ 284 (945)
....-+|++|++..... +..+.+...+........+|+++....... .+.
T Consensus 87 ~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred hhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHH
Confidence 01234889999964211 122334444433333335555654432211 111
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHhc
Q 002265 285 TTELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
..-...+.+++++.+|-.+++.+.+.
T Consensus 167 sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 167 SRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred hccceEEEECCCCHHHHHHHHHHHHH
Confidence 11123688999999999999987764
No 123
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.69 E-value=7e-06 Score=84.60 Aligned_cols=241 Identities=19% Similarity=0.148 Sum_probs=117.0
Q ss_pred ccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCcc-------ccccCccc
Q 002265 515 ICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN-------VRKLIHLK 587 (945)
Q Consensus 515 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~-------i~~L~~L~ 587 (945)
...+..+..+++++|..- .. -...+...+.+.+.||.-+|++- +.+-...++|+. +-..++|+
T Consensus 26 ~~~~~s~~~l~lsgnt~G-~E-Aa~~i~~~L~~~~~L~~v~~sd~--------ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFG-TE-AARAIAKVLASKKELREVNLSDM--------FTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred hcccCceEEEeccCCchh-HH-HHHHHHHHHhhcccceeeehHhh--------hcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 344556667777766521 00 11234444566667777775542 111122344433 22344777
Q ss_pred cccccccccc-----ccChhhhcCCcccEEEecCCCCccccCc--------------ccccccCCCeeecCCCCCCccCc
Q 002265 588 YLNLSELGIE-----ILPETLCELYNLQKLDIRRCRNLRELPA--------------GIGKLMNMRSLLNGETYSLKYMP 648 (945)
Q Consensus 588 ~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lP~--------------~i~~L~~L~~L~l~~~~~l~~lp 648 (945)
+|+||+|-+. .+-.-|..+..|++|.|.+|. +...-. -+..-++||.+..++| .+..-+
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~g 173 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGG 173 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cccccc
Confidence 7777777654 222345667778888887776 432111 1222344555544444 222221
Q ss_pred -----cCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEecc
Q 002265 649 -----IGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGR 723 (945)
Q Consensus 649 -----~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 723 (945)
..+...+.|+.+.+..+.+.. ... ......+..|++|+.|+|..|.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~----------------------------eG~-~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRP----------------------------EGV-TALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccC----------------------------chh-HHHHHHHHhCCcceeeecccch
Confidence 112222233333222222111 011 2344456677777777777776
Q ss_pred ccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCC-----CCcccc-cccCCcEEEEecCCCCCc-----CCCC
Q 002265 724 VVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNI-----FPKWLT-SLTNLRELRLVSCVDCEH-----LPPL 792 (945)
Q Consensus 724 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~-~l~~L~~L~L~~~~~~~~-----l~~l 792 (945)
+.. .........+...++|+.|++.+|.... +-..+. ..++|+.|.+.+|..... .-..
T Consensus 225 ft~----------egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~ 294 (382)
T KOG1909|consen 225 FTL----------EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM 294 (382)
T ss_pred hhh----------HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence 421 1123334455556677777777776432 111111 467777777777753221 0113
Q ss_pred Cccc-cceEeecccc
Q 002265 793 GKLA-LEKLELGNLK 806 (945)
Q Consensus 793 ~~l~-L~~L~l~~~~ 806 (945)
...| |..|.|.+|.
T Consensus 295 ~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNR 309 (382)
T ss_pred hcchhhHHhcCCccc
Confidence 3456 7777777654
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=97.65 E-value=0.00053 Score=72.82 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=63.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccc-------C--------------------------CceEEEEEcCccCC------
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVN-------S--------------------------RKKIFLVLDDVWDG------ 249 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~-------~--------------------------~~~~LlvlDdv~~~------ 249 (945)
.+.++|++|+||||+|+.+++..... . ...-+|++|++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~ 140 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNE 140 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCc
Confidence 47889999999999999995532100 0 12348899999642
Q ss_pred ---CcCChhhHHhhccCCCCCcEEEEEcCchHHHHHh------cCCCceeeeCCCCChHHHHHHHHHHhc
Q 002265 250 ---NCNKWEPFFRCLKNDLHGGKILVTTRNVSVARMM------GTTELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 250 ---~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~------~~~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
..+..+.+...+.....+.+||+++....+.... ...-...+.+.+++.+|..+++...+-
T Consensus 141 ~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 141 RDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 0112233444444444556777777644432211 111124799999999999999888764
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00063 Score=78.88 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=102.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+..++.+...+... .-.+.+-++|+.|+||||+|+.+++.....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI 91 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE
Confidence 47899999999999988643 235678999999999999998876643210
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
.+++-++|+|++...+...++.+...+........+|++|.. ..+...+... .
T Consensus 92 ~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR-c 170 (563)
T PRK06647 92 EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR-C 170 (563)
T ss_pred EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh-c
Confidence 045557889999776655677777777765566676665543 4444333322 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
..+++.+++.++..+.+...+........ .+.+..|++.++|-+-.+
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 47899999999988888776643222111 345566888888866433
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00066 Score=79.67 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=101.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+..++.... -.+.+-++|+.|+||||+|+.+++.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALD 91 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCcc
Confidence 468999999999988886532 24578899999999999998876543210
Q ss_pred -----C----------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCC
Q 002265 235 -----S----------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTT 286 (945)
Q Consensus 235 -----~----------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~ 286 (945)
. +++-++|+|++.......+..+...+........+|++|.+ ..+...+...
T Consensus 92 ~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR 171 (620)
T PRK14948 92 VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR 171 (620)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh
Confidence 0 44568899999876655677777777765555665555543 3343333222
Q ss_pred CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 287 ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
...+++..++.++..+.+.+.+........ .+.+..|++.++|-+..+.
T Consensus 172 -c~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 172 -CQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred -eeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 347888999999888877776543221111 2346788889988765443
No 127
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=9.7e-05 Score=80.24 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=84.7
Q ss_pred HHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc--cceEeeccccCceEeCccccCCC
Q 002265 742 LLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA--LEKLELGNLKSVKRLGNEFLGIE 819 (945)
Q Consensus 742 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~--L~~L~l~~~~~L~~l~~~~~~~~ 819 (945)
....+..+.++..|++++|....+|. -..+|+.|.+++|..+..+|. .+| |+.|.+.+|..+..++.
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP~------ 112 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLPE------ 112 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCccccccccc------
Confidence 33445556889999999998888882 345799999999999888885 355 99999999976654432
Q ss_pred CCCCCCCCCCCCCCcCcCCCccceeeccC--ccccccccccccccccccCCCcccccCCC-----CC-CCC-CccceEee
Q 002265 820 ESSEDDPSSSSSSSSVTAFPKLKSLEIKG--LDELEEWNYRITRKENVSIMPQLPILEDH-----RT-TDI-PRLSSLRI 890 (945)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~--~~~L~~~~~~~~~~~~~~~lp~l~~~~~~-----~l-~~l-~~L~~L~l 890 (945)
+|+.|++.+ |..+..+|..+. .|.+.+.. .+ ..| ++|+.|.+
T Consensus 113 --------------------sLe~L~L~~n~~~~L~~LPssLk---------~L~I~~~n~~~~~~lp~~LPsSLk~L~I 163 (426)
T PRK15386 113 --------------------SVRSLEIKGSATDSIKNVPNGLT---------SLSINSYNPENQARIDNLISPSLKTLSL 163 (426)
T ss_pred --------------------ccceEEeCCCCCcccccCcchHh---------heeccccccccccccccccCCcccEEEe
Confidence 344454432 222222222110 11110000 00 123 37999999
Q ss_pred ccCcCCCCCCcCCCCCCCccEEEEeCCc
Q 002265 891 WYCPKLKVLPDYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 891 ~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 918 (945)
.+|..+ .+|..+ +.+|+.|+++.+.
T Consensus 164 s~c~~i-~LP~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 164 TGCSNI-ILPEKL--PESLQSITLHIEQ 188 (426)
T ss_pred cCCCcc-cCcccc--cccCcEEEecccc
Confidence 999755 355443 3689999987763
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00054 Score=80.40 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=102.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------c-----
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---------------------N----- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~---------------------~----- 234 (945)
.+++|.+...+.+...+... .-.+.+-++|+.|+||||+|+.+...... .
T Consensus 17 ~~viGq~~~~~~L~~~i~~~----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 47899999999999988642 23567899999999999999876653210 0
Q ss_pred --------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCC
Q 002265 235 --------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTE 287 (945)
Q Consensus 235 --------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~ 287 (945)
++++-++|+|++...+.+.++.+...+......+.+|++| +...+...+...
T Consensus 93 ~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR- 171 (614)
T PRK14971 93 HELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR- 171 (614)
T ss_pred EEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh-
Confidence 0455578999998776666777888887766667766544 545555443332
Q ss_pred ceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 288 LDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
..++++.+++.++....+...+-....... .+.+..|++.++|-.-
T Consensus 172 c~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr 217 (614)
T PRK14971 172 CQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMR 217 (614)
T ss_pred hheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 348999999999998888876543222112 2356778888888553
No 129
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00048 Score=74.39 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=87.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccccc-----------------------------------C---------------
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVN-----------------------------------S--------------- 235 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-----------------------------------~--------------- 235 (945)
-.+.+-++|+.|+||||+|+.+....-.. .
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999997765432110 0
Q ss_pred ----CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHHHHHhc
Q 002265 236 ----RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 236 ----~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
+++-++|+|++...+......+...+.....++.+|+||.+.. +...+.+. ...+.+.+++.+++.+.+.....
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR-c~~~~~~~~~~~~~~~~L~~~~~ 179 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR-CQQQACPLPSNEESLQWLQQALP 179 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh-ceeeeCCCcCHHHHHHHHHHhcc
Confidence 3344456799988776777778777776666778777777653 33332222 34799999999999988876531
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 311 FDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
. . . .+.+..++..++|.|+....+
T Consensus 180 ~-~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 E-S---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred c-C---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 1 1 223456788999999755444
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.00096 Score=77.74 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=98.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+...+.... -.+.+-++|+.|+||||+|+.+.......
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVI 91 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeE
Confidence 579999999999999887532 35678899999999999998775542100
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~ 288 (945)
.+++-++|+|++.......+..+...+........+|++| ....+...+... .
T Consensus 92 eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR-c 170 (559)
T PRK05563 92 EIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR-C 170 (559)
T ss_pred EeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH-h
Confidence 0456678899997765556667777766555555555544 444443333222 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
..+++.+++.++..+.+...+-....... ......|++.++|-+.
T Consensus 171 ~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R 215 (559)
T PRK05563 171 QRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMR 215 (559)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 47889999999988888776642221112 2345667778887654
No 131
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00057 Score=80.01 Aligned_cols=153 Identities=13% Similarity=0.170 Sum_probs=101.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|.+...+.+...+... .-.+.+-++|+.|+||||+|+.+.+.....
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 47999999889998888642 235677899999999999998776543210
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEc-CchHHHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTT-RNVSVARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTt-r~~~~~~~~~~~~~ 288 (945)
++++-++|+|+|...+......+...+........+|++| ....+...+... .
T Consensus 92 eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR-c 170 (576)
T PRK14965 92 EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR-C 170 (576)
T ss_pred eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh-h
Confidence 0345578899997766556677777777665666666554 445454433322 2
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh-hHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP-LAAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 342 (945)
..+++++++.++....+...+-....... .+....|++.++|-. .|+..+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 171 QRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 37899999999988777765532221112 234567888888744 455444
No 132
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.53 E-value=4.5e-05 Score=81.22 Aligned_cols=192 Identities=25% Similarity=0.250 Sum_probs=124.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC---------------------------------------------CceEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------------------RKKIF 240 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------------------~~~~L 240 (945)
..+.+.++|.|||||||++-++.. ....+ .++.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence 467899999999999999987776 22211 67889
Q ss_pred EEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHHHhcCCCceeeeCCCCChH-HHHHHHHHHhccCCCC-cch
Q 002265 241 LVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVARMMGTTELDIISIEQLAEE-ECWSLFERLVFFDRSS-EDR 318 (945)
Q Consensus 241 lvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~~~l~~l~~~-~~~~lf~~~~~~~~~~-~~~ 318 (945)
+|+||..+.. +.-..+...+......-.|+.|+|..... .......+.+|+.- ++.++|...+...... .-.
T Consensus 92 lvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~-----~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 92 LVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV-----AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc-----cccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 9999885431 22233444444555555788888864332 22346778888764 7899988776433221 122
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhccccccc-------CccchhHHHhhccCCCCchHHH
Q 002265 319 EKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESILESEMWEVEEI-------GQGLLAPLLLSYNDLPSNSMVK 391 (945)
Q Consensus 319 ~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~-------~~~i~~~l~~sy~~L~~~~~~k 391 (945)
........+|.++..|.|++|...++..+.-. ..+-...++.....+... .+.....+.+||.-|.. ..+
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg--we~ 242 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG--WER 242 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh--HHH
Confidence 33456778899999999999999998887653 222222222211111111 12356678899999988 557
Q ss_pred HHHhhhccCCCCceec
Q 002265 392 QCFSYCAVFPKDYNMD 407 (945)
Q Consensus 392 ~cfl~~a~fp~~~~i~ 407 (945)
--|--++.|..++...
T Consensus 243 ~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 243 ALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHhcchhhhhhhhccc
Confidence 7888888887766544
No 133
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.53 E-value=0.00042 Score=84.59 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=76.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc------------------------C-
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN------------------------S- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~------------------------~- 235 (945)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++..... +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-----~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-----QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-----cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 468999999999999887543 2345699999999999999888653100 0
Q ss_pred -----------------CceEEEEEcCccCCCc-----CChh---hHHhhccCCCCCcEEEEEcCchHHHH------Hhc
Q 002265 236 -----------------RKKIFLVLDDVWDGNC-----NKWE---PFFRCLKNDLHGGKILVTTRNVSVAR------MMG 284 (945)
Q Consensus 236 -----------------~~~~LlvlDdv~~~~~-----~~~~---~l~~~~~~~~~gs~iiiTtr~~~~~~------~~~ 284 (945)
+++.+|++|++..... ...+ .+...+..+ .-++|-||....... .+.
T Consensus 262 ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~~e~~~~~~~d~AL~ 339 (852)
T TIGR03345 262 GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTWAEYKKYFEKDPALT 339 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCHHHHhhhhhccHHHH
Confidence 4678999999965311 1122 133333221 235555555432211 111
Q ss_pred CCCceeeeCCCCChHHHHHHHHHH
Q 002265 285 TTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
.. ...+.+++++.++..+++...
T Consensus 340 rR-f~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 340 RR-FQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred Hh-CeEEEeCCCCHHHHHHHHHHH
Confidence 11 248999999999999997543
No 134
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1.5e-05 Score=70.80 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=54.8
Q ss_pred cCCCcccccCcccccc-CcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCcc
Q 002265 568 LDPNSIREIPKNVRKL-IHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKY 646 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L-~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 646 (945)
+++|.++++|..+... +.+..|+|++|.|..+|.++..++.|+.|+++.|. +...|..|..|.+|-.|+.-++ ....
T Consensus 60 ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n-a~~e 137 (177)
T KOG4579|consen 60 LSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN-ARAE 137 (177)
T ss_pred cccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC-cccc
Confidence 6666667777665433 36777777777777777777777777777777776 7777777777777777776655 3334
Q ss_pred Cc
Q 002265 647 MP 648 (945)
Q Consensus 647 lp 648 (945)
+|
T Consensus 138 id 139 (177)
T KOG4579|consen 138 ID 139 (177)
T ss_pred Cc
Confidence 44
No 135
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.48 E-value=0.0019 Score=78.04 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=82.0
Q ss_pred cCCceecchhHHHHHHHHHhcccc-CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSE-QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~-~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
-+.+.+|.++..++|++++..... ......++.++|++|+||||+|+.++......+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccC
Confidence 356789999999999988863211 112345799999999999999998876432111
Q ss_pred ---------------CceEEEEEcCccCCCcCC----hhhHHhhccCC---------------CCCcEEEEEcCchHHHH
Q 002265 236 ---------------RKKIFLVLDDVWDGNCNK----WEPFFRCLKND---------------LHGGKILVTTRNVSVAR 281 (945)
Q Consensus 236 ---------------~~~~LlvlDdv~~~~~~~----~~~l~~~~~~~---------------~~gs~iiiTtr~~~~~~ 281 (945)
..+-+++||.++....+. ...+...+... -.+.-+|.|+.+..+..
T Consensus 400 g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~ 479 (784)
T PRK10787 400 GSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPA 479 (784)
T ss_pred CCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCH
Confidence 123378999997643221 34455444321 12334555665544433
Q ss_pred HhcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 282 MMGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 282 ~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.+-.. ..++++.+++.+|-.++.+++.
T Consensus 480 aLl~R-~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 480 PLLDR-MEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHhcc-eeeeecCCCCHHHHHHHHHHhh
Confidence 32222 2378899999999888877655
No 136
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.47 E-value=0.0012 Score=70.13 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=62.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccc-------C--------------------------CceEEEEEcCccCCC-----
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVN-------S--------------------------RKKIFLVLDDVWDGN----- 250 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~-------~--------------------------~~~~LlvlDdv~~~~----- 250 (945)
-+.++|++|+||||+|+.++...... + -..-+|+||++....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~ 139 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNE 139 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCc
Confidence 58899999999999996554422100 0 123578899996320
Q ss_pred ----cCChhhHHhhccCCCCCcEEEEEcCchHHHHHhcC------CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 251 ----CNKWEPFFRCLKNDLHGGKILVTTRNVSVARMMGT------TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 251 ----~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~~~------~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
.+.++.+...+.....+.+||+++.....-..... .-...+++++++.+|-.+++.+.+-
T Consensus 140 ~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 140 RDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 11233445555554456677777654332221111 1123799999999999999888763
No 137
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=7.2e-05 Score=53.90 Aligned_cols=41 Identities=32% Similarity=0.395 Sum_probs=34.4
Q ss_pred CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccCh
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPE 601 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 601 (945)
++|++|+ +++|.+..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~------------l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELD------------LSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEE------------ETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEE------------ccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4789999 7888889999889999999999999999987653
No 138
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.41 E-value=0.00026 Score=65.96 Aligned_cols=68 Identities=24% Similarity=0.169 Sum_probs=45.5
Q ss_pred EEEEecCCCcHHHHHHHHhccccccC-----------------------------Cc-eEEEEEcCccCCCcCC------
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------------RK-KIFLVLDDVWDGNCNK------ 253 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------------~~-~~LlvlDdv~~~~~~~------ 253 (945)
|.|+|+.|+||||+|+.+++...... .. +.+|++||++......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 56899999999999999998865322 33 7999999996543222
Q ss_pred -----hhhHHhhccCCC---CCcEEEEEcCch
Q 002265 254 -----WEPFFRCLKNDL---HGGKILVTTRNV 277 (945)
Q Consensus 254 -----~~~l~~~~~~~~---~gs~iiiTtr~~ 277 (945)
...+...+.... .+..||.||...
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ccccccceeeecccccccccccceeEEeeCCh
Confidence 333444444332 235677777663
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.41 E-value=0.0016 Score=73.49 Aligned_cols=125 Identities=19% Similarity=0.150 Sum_probs=75.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC---------------------------------CceEEEEEcCccCCCcCC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------RKKIFLVLDDVWDGNCNK 253 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------~~~~LlvlDdv~~~~~~~ 253 (945)
...+.|+|..|+|||+|++++++...... .+.-+|||||+.......
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCH
Confidence 45689999999999999999887643210 112379999997532111
Q ss_pred -h-hhHHhhccCC-CCCcEEEEEcCc-hHH--------HHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHH
Q 002265 254 -W-EPFFRCLKND-LHGGKILVTTRN-VSV--------ARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKL 321 (945)
Q Consensus 254 -~-~~l~~~~~~~-~~gs~iiiTtr~-~~~--------~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~ 321 (945)
+ +.+...+... ..|..||+|+.. ... ...+.. +.++.+++.+.++-.+++.+++-......+
T Consensus 216 ~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--g~~v~i~~pd~~~r~~il~~~~~~~~~~l~---- 289 (405)
T TIGR00362 216 RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW--GLVVDIEPPDLETRLAILQKKAEEEGLELP---- 289 (405)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC--CeEEEeCCCCHHHHHHHHHHHHHHcCCCCC----
Confidence 1 2233333211 234567887764 221 112222 237899999999999999988754322222
Q ss_pred HHHHHHHHHHcCCChh
Q 002265 322 ESIGRKIARNCKGLPL 337 (945)
Q Consensus 322 ~~~~~~i~~~c~glPL 337 (945)
.++...|++.+.|-.-
T Consensus 290 ~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 290 DEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHHHHHHHhcCCCHH
Confidence 3455666777776544
No 140
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.38 E-value=0.00011 Score=73.22 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=35.2
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.|+||+++++++...+.. . .....+.+.|+|++|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~-~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-A-QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-T-SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-H-HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999962 2 23457899999999999999999998877665
No 141
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.38 E-value=2.7e-05 Score=88.28 Aligned_cols=109 Identities=27% Similarity=0.250 Sum_probs=86.2
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
+..++.|..|+ +.+|.+..+...+..+.+|++|++++|.|+.+. .+..+..|+.|++++|. +..++
T Consensus 91 l~~~~~l~~l~------------l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALD------------LYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS 156 (414)
T ss_pred cccccceeeee------------ccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc
Confidence 66788899999 777778888665888999999999999999874 47888889999999988 77776
Q ss_pred cccccccCCCeeecCCCCCCccCccC-CCCCCCCCcCCcccccCCc
Q 002265 625 AGIGKLMNMRSLLNGETYSLKYMPIG-ISKLTSLRTLDRFVVGGGV 669 (945)
Q Consensus 625 ~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~ 669 (945)
. +..+++|+.+++++| .+..+... +..+.+|+.+.+..+....
T Consensus 157 ~-~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 157 G-LESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred C-CccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCchhc
Confidence 5 677999999999998 45555432 5778888888776665443
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0015 Score=75.06 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=74.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc-------cC---------------C-----------ceEEEEEcCccCCCc-C
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEV-------NS---------------R-----------KKIFLVLDDVWDGNC-N 252 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~-------~~---------------~-----------~~~LlvlDdv~~~~~-~ 252 (945)
...+.|||..|+|||.|++++.+.... .+ . +-=+|||||+..... .
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH
Confidence 345899999999999999998886432 11 1 112799999975422 2
Q ss_pred Ch-hhHHhhccCC-CCCcEEEEEcCch---------HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHH
Q 002265 253 KW-EPFFRCLKND-LHGGKILVTTRNV---------SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKL 321 (945)
Q Consensus 253 ~~-~~l~~~~~~~-~~gs~iiiTtr~~---------~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~ 321 (945)
.| +.+...+... ..|..|||||+.. .+...+... -+++++..+.+.-.+++.+++-...-...
T Consensus 394 ~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aIL~kka~~r~l~l~---- 467 (617)
T PRK14086 394 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAILRKKAVQEQLNAP---- 467 (617)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHHHHHHHHhcCCCCC----
Confidence 22 2233333211 2356788888752 233334443 38999999999999999988754332223
Q ss_pred HHHHHHHHHHcCC
Q 002265 322 ESIGRKIARNCKG 334 (945)
Q Consensus 322 ~~~~~~i~~~c~g 334 (945)
.++..-|++++.+
T Consensus 468 ~eVi~yLa~r~~r 480 (617)
T PRK14086 468 PEVLEFIASRISR 480 (617)
T ss_pred HHHHHHHHHhccC
Confidence 2344444444443
No 143
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=8.8e-05 Score=87.72 Aligned_cols=129 Identities=27% Similarity=0.251 Sum_probs=92.4
Q ss_pred CCcEEEEEeecCCCC--CCCc-cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCC
Q 002265 495 GVKVRHLGLNFEGGD--SFPM-SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPN 571 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~--~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~ 571 (945)
..+++++.+.+...- ..|. .-.-+|.|++|.+.+..... +.+...+.+|++|+.|| ++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-----~dF~~lc~sFpNL~sLD------------IS~T 183 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-----DDFSQLCASFPNLRSLD------------ISGT 183 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-----hhHHHHhhccCccceee------------cCCC
Confidence 456888888664321 1122 22458999999999866332 22456688999999999 7777
Q ss_pred cccccCccccccCccccccccccccccc--ChhhhcCCcccEEEecCCCCccccCccc-------ccccCCCeeecCCCC
Q 002265 572 SIREIPKNVRKLIHLKYLNLSELGIEIL--PETLCELYNLQKLDIRRCRNLRELPAGI-------GKLMNMRSLLNGETY 642 (945)
Q Consensus 572 ~l~~lp~~i~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lP~~i-------~~L~~L~~L~l~~~~ 642 (945)
++..+ .+|++|++|+.|.+++-.+..- -..+-+|++|++||+|...... -+.-+ ..|++||.||.+++.
T Consensus 184 nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 184 NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 77777 7899999999999998877632 2567889999999999866332 22111 238899999998774
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.34 E-value=0.00085 Score=76.04 Aligned_cols=133 Identities=20% Similarity=0.155 Sum_probs=83.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-------C----------------------------CceEEEEEcCccCCCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-------S----------------------------RKKIFLVLDDVWDGNC 251 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------~----------------------------~~~~LlvlDdv~~~~~ 251 (945)
...+.|+|..|+|||+|++++.+..... + ...-+||+||+.....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 4568999999999999999998743210 0 1233899999965421
Q ss_pred -CCh-hhHHhhccCC-CCCcEEEEEcCch---------HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchH
Q 002265 252 -NKW-EPFFRCLKND-LHGGKILVTTRNV---------SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDRE 319 (945)
Q Consensus 252 -~~~-~~l~~~~~~~-~~gs~iiiTtr~~---------~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~ 319 (945)
..+ +.+...+... ..|..||+|+... .+...+... -++.+++++.++-.+++.+++-...-. ..
T Consensus 221 k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~iL~~~~~~~gl~--~~ 296 (450)
T PRK14087 221 KEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATAIIKKEIKNQNIK--QE 296 (450)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHHHHHHHHHhcCCC--CC
Confidence 112 3333333221 2355788887642 233334333 378999999999999999887432110 01
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHH
Q 002265 320 KLESIGRKIARNCKGLPLAAKVIG 343 (945)
Q Consensus 320 ~~~~~~~~i~~~c~glPLai~~~~ 343 (945)
--.++..-|++.++|.|-.+.-+.
T Consensus 297 l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 297 VTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred CCHHHHHHHHHccCCCHHHHHHHH
Confidence 224577889999999887665543
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.34 E-value=0.00073 Score=81.96 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=75.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc------------------------C-
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN------------------------S- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~------------------------~- 235 (945)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++..... +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-----~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~ 256 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-----KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR 256 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-----CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence 368999999999999887542 2345799999999999999887654110 0
Q ss_pred ----------------CceEEEEEcCccCCC------cCC---hhhHHhhccCCCCCcEEEEEcCchHH------HHHhc
Q 002265 236 ----------------RKKIFLVLDDVWDGN------CNK---WEPFFRCLKNDLHGGKILVTTRNVSV------ARMMG 284 (945)
Q Consensus 236 ----------------~~~~LlvlDdv~~~~------~~~---~~~l~~~~~~~~~gs~iiiTtr~~~~------~~~~~ 284 (945)
.++.+|++|++.... ... -+.+...+.. + .-++|-+|...+. -..+.
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~e~~~~~~~d~al~ 334 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYEEYKNHFEKDRALS 334 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHHHHHHHhhhhHHHH
Confidence 347899999996321 011 1223333322 1 2244444443221 11111
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHh
Q 002265 285 TTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.. ...+++.+++.++..+++....
T Consensus 335 rR-f~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 335 RR-FQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred Hh-CceEEeCCCCHHHHHHHHHHHH
Confidence 11 2378999999999999998644
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=0.00021 Score=84.56 Aligned_cols=133 Identities=22% Similarity=0.183 Sum_probs=87.4
Q ss_pred CCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccc
Q 002265 518 LDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE 597 (945)
Q Consensus 518 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~ 597 (945)
-.+|++|++.+...+. ..++.+.-..+|.||.|.+++-.+. .-.+.. -..++++|+.||+|+++++
T Consensus 121 r~nL~~LdI~G~~~~s----~~W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~---lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS----NGWPKKIGTMLPSLRSLVISGRQFD-------NDDFSQ---LCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HHhhhhcCccccchhh----ccHHHHHhhhCcccceEEecCceec-------chhHHH---HhhccCccceeecCCCCcc
Confidence 3578888888866442 2455565667888998886654431 111222 2456788899999999988
Q ss_pred ccChhhhcCCcccEEEecCCCCccccC--cccccccCCCeeecCCCCCCccC--c----cCCCCCCCCCcCCccccc
Q 002265 598 ILPETLCELYNLQKLDIRRCRNLRELP--AGIGKLMNMRSLLNGETYSLKYM--P----IGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 598 ~lp~~i~~L~~L~~L~L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~l--p----~~i~~L~~L~~L~~~~~~ 666 (945)
.+ ..|++|++||+|.+++-. ...-+ ..+.+|++|++||+|........ . +.-..|++|+.||.+++.
T Consensus 187 nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred Cc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88 788999999999887643 32222 24678999999999865332211 1 112347888888877554
No 147
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0051 Score=67.42 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=100.9
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------------
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------- 235 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------- 235 (945)
.+.+|+++++++...|...-.+ ....-+.|+|..|+|||+.++.+.+......
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 4999999999999888654322 2223389999999999999999887654331
Q ss_pred -------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCC-CcE--EEEEcCchHHHHHhc---
Q 002265 236 -------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLH-GGK--ILVTTRNVSVARMMG--- 284 (945)
Q Consensus 236 -------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~-gs~--iiiTtr~~~~~~~~~--- 284 (945)
++.+++|||+++......-+.+...+..... .++ ||..+.+......+.
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 6899999999976432222445555443332 344 333444443332221
Q ss_pred --CCCceeeeCCCCChHHHHHHHHHHhccC--CCCcchHHHHHHHHHHHHHcCCChhHHHHHH
Q 002265 285 --TTELDIISIEQLAEEECWSLFERLVFFD--RSSEDREKLESIGRKIARNCKGLPLAAKVIG 343 (945)
Q Consensus 285 --~~~~~~~~l~~l~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 343 (945)
.-....+...|-+.+|-.+++..++-.. .....+..++-+|...++..|-.-.||..+-
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1122347788999999999998876422 1223334455556566666656666666553
No 148
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.28 E-value=0.0006 Score=76.15 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=82.2
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.+..++++.+.+...-. +-...+-+.++|++|+|||++|+++++.....+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~ 262 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGP 262 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHH
Confidence 4678999999888877642110 012345688999999999999999998644221
Q ss_pred ------------CceEEEEEcCccCCCc--------CC---hhhHHhhc---cC--CCCCcEEEEEcCchHHHHHhcC--
Q 002265 236 ------------RKKIFLVLDDVWDGNC--------NK---WEPFFRCL---KN--DLHGGKILVTTRNVSVARMMGT-- 285 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~--------~~---~~~l~~~~---~~--~~~gs~iiiTtr~~~~~~~~~~-- 285 (945)
....+|+||++..... .. ...+...+ .. ...+.+||.||...+.....-.
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRp 342 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRP 342 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccC
Confidence 4567899999853110 00 01112211 11 1235678888876655443211
Q ss_pred -CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 286 -TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 286 -~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
.-+..+++...+.++..++|..+..
T Consensus 343 GRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 343 GRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1235789999999999999987763
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.27 E-value=0.00095 Score=75.32 Aligned_cols=103 Identities=23% Similarity=0.225 Sum_probs=64.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC-------------------------------CceEEEEEcCccCCCcCCh-
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------RKKIFLVLDDVWDGNCNKW- 254 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------~~~~LlvlDdv~~~~~~~~- 254 (945)
..-+.|+|+.|+|||+|++++.+...... ...-++++||+.......+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhh
Confidence 45688999999999999999987543110 2233889999965422111
Q ss_pred -hhHHhhccC-CCCCcEEEEEcCch-H--------HHHHhcCCCceeeeCCCCChHHHHHHHHHHhcc
Q 002265 255 -EPFFRCLKN-DLHGGKILVTTRNV-S--------VARMMGTTELDIISIEQLAEEECWSLFERLVFF 311 (945)
Q Consensus 255 -~~l~~~~~~-~~~gs~iiiTtr~~-~--------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~ 311 (945)
+.+...+.. ...|..||+||... . +...+.. +.++.+.+++.++-.+++.+++-.
T Consensus 221 qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~--Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 221 QEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW--GIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC--CeEEecCCCCHHHHHHHHHHHHHH
Confidence 223322211 11355788888542 1 2222322 248999999999999999887743
No 150
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.26 E-value=0.0047 Score=75.47 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=76.5
Q ss_pred CCceecchhHHHHHHHHHhcccc-CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE-QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~-~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------- 235 (945)
+.+++|.++..+.+.+++..... ......++.++|++|+|||++|+.+.+.....+
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g 398 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVG 398 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeC
Confidence 45688999999998887642210 112234799999999999999999887642111
Q ss_pred --------------CceEEEEEcCccCCCcC----ChhhHHhhccC--------C-------CCCcEEEEEcCchH-HHH
Q 002265 236 --------------RKKIFLVLDDVWDGNCN----KWEPFFRCLKN--------D-------LHGGKILVTTRNVS-VAR 281 (945)
Q Consensus 236 --------------~~~~LlvlDdv~~~~~~----~~~~l~~~~~~--------~-------~~gs~iiiTtr~~~-~~~ 281 (945)
.++-+|+||.++..... ....+...+.. . ..+.-+|.||.... +..
T Consensus 399 ~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 399 AMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred CCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 12347899999764321 11223332221 0 02334455555432 222
Q ss_pred HhcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 282 MMGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 282 ~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.+-.. ..++++.+++.++-.+++..+.
T Consensus 479 ~L~~R-~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 479 PLLDR-MEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HHhCC-eeEEecCCCCHHHHHHHHHHHH
Confidence 22222 2478999999988888876654
No 151
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0033 Score=71.65 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=82.2
Q ss_pred cCCceecchhHHHHHHHHHhcccc-CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSE-QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~-~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
-+.+-+|.++-.++|+++|.-... ..-.-.++.++|++|||||.|++.++......|
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccc
Confidence 466789999999999999853221 112336999999999999999999988765444
Q ss_pred ---------------CceEEEEEcCccCCCc----CChhhHHhhccCCC-------------CCcEEE-EEcC-chH-HH
Q 002265 236 ---------------RKKIFLVLDDVWDGNC----NKWEPFFRCLKNDL-------------HGGKIL-VTTR-NVS-VA 280 (945)
Q Consensus 236 ---------------~~~~LlvlDdv~~~~~----~~~~~l~~~~~~~~-------------~gs~ii-iTtr-~~~-~~ 280 (945)
.++=+++||.|+.... +.-..+...+.+.. -=|+|+ |||- +-+ +.
T Consensus 401 GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP 480 (782)
T COG0466 401 GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIP 480 (782)
T ss_pred ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCC
Confidence 4566999999976421 11222333322110 113333 4443 322 32
Q ss_pred HH-hcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 281 RM-MGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 281 ~~-~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.. +... .++++.+.+++|-.++=+++.
T Consensus 481 ~PLlDRM--EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 481 APLLDRM--EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hHHhcce--eeeeecCCChHHHHHHHHHhc
Confidence 22 2333 389999999999888776654
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.22 E-value=0.0012 Score=81.23 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=74.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.......
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-----~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ 253 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-----KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYR 253 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-----cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCc
Confidence 458999999999999997543 22356999999999999988876542100
Q ss_pred ----------------CceEEEEEcCccCCC-----cC--Chhh-HHhhccCCCCCcEEEEEcCchHHHHH------hcC
Q 002265 236 ----------------RKKIFLVLDDVWDGN-----CN--KWEP-FFRCLKNDLHGGKILVTTRNVSVARM------MGT 285 (945)
Q Consensus 236 ----------------~~~~LlvlDdv~~~~-----~~--~~~~-l~~~~~~~~~gs~iiiTtr~~~~~~~------~~~ 285 (945)
.++.+|++|++.... .. .... +...+. .+ .-++|.+|........ +..
T Consensus 254 ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg-~l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 254 GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RG-ELQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CC-CcEEEEeCCHHHHHHHHhcCHHHHh
Confidence 457899999995210 01 1122 222222 11 2345555554433221 112
Q ss_pred CCceeeeCCCCChHHHHHHHHH
Q 002265 286 TELDIISIEQLAEEECWSLFER 307 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~ 307 (945)
. ...+.+.+.+.++...++..
T Consensus 332 R-f~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 332 R-FQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred c-ceEEecCCCCHHHHHHHHHH
Confidence 1 23688899999998888764
No 153
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.18 E-value=0.00013 Score=64.98 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=70.2
Q ss_pred CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccc
Q 002265 517 GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGI 596 (945)
Q Consensus 517 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i 596 (945)
...+|....+++|. +..+++++-.+++-+..|+ +.+|.+..+|..+..++.|+.|+++.|.+
T Consensus 51 ~~~el~~i~ls~N~------fk~fp~kft~kf~t~t~lN------------l~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNG------FKKFPKKFTIKFPTATTLN------------LANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccch------hhhCCHHHhhccchhhhhh------------cchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 34455555666555 3344555556666777888 77778889999999999999999999999
Q ss_pred cccChhhhcCCcccEEEecCCCCccccCccc
Q 002265 597 EILPETLCELYNLQKLDIRRCRNLRELPAGI 627 (945)
Q Consensus 597 ~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i 627 (945)
...|..|-.|.+|-.||.-++. ...+|-..
T Consensus 113 ~~~p~vi~~L~~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 113 NAEPRVIAPLIKLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred ccchHHHHHHHhHHHhcCCCCc-cccCcHHH
Confidence 9999999889999999998877 66777654
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.18 E-value=0.0021 Score=71.44 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=80.6
Q ss_pred CceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.+..++++.+.+...- .+-...+-+.++|++|+|||++|+++++.....+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~ 224 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGP 224 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhH
Confidence 568899988888877653110 0112356788999999999999999987644322
Q ss_pred ------------CceEEEEEcCccCCC------c----CCh----hhHHhhccC--CCCCcEEEEEcCchHHHHH-hc--
Q 002265 236 ------------RKKIFLVLDDVWDGN------C----NKW----EPFFRCLKN--DLHGGKILVTTRNVSVARM-MG-- 284 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~------~----~~~----~~l~~~~~~--~~~gs~iiiTtr~~~~~~~-~~-- 284 (945)
....+|++|++...- . ... ..+...+.. ...+..||.||...+.... +-
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~ 304 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRP 304 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCC
Confidence 456799999985421 0 011 112222211 1245678888876554322 11
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHh
Q 002265 285 TTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
..-+..+++...+.++..++|..+.
T Consensus 305 GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 305 GRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CcccEEEEeCCcCHHHHHHHHHHHH
Confidence 1123468999999999888887665
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0071 Score=66.14 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=94.0
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------C-
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------R- 236 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------~- 236 (945)
+.-++|-......-...-.... .+.....+-|||..|.|||.|++++.+...... +
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~-~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~ 165 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN-PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDN 165 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc-cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhh
Confidence 3445665544433222222221 122467899999999999999999988654332 1
Q ss_pred ---------ceEEEEEcCccCCCc-CCh-hhHHhhccCC-CCCcEEEEEcCc---------hHHHHHhcCCCceeeeCCC
Q 002265 237 ---------KKIFLVLDDVWDGNC-NKW-EPFFRCLKND-LHGGKILVTTRN---------VSVARMMGTTELDIISIEQ 295 (945)
Q Consensus 237 ---------~~~LlvlDdv~~~~~-~~~-~~l~~~~~~~-~~gs~iiiTtr~---------~~~~~~~~~~~~~~~~l~~ 295 (945)
.-=++++||++.... +.| +.+...|..- ..|..||+|++. .++...+... -++++.+
T Consensus 166 ~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~ 243 (408)
T COG0593 166 EMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEP 243 (408)
T ss_pred hHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCC
Confidence 123889999975321 122 2233333211 234489999864 2344455554 3899999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 296 LAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 296 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
++.+....++.+++....-.-+.+...-++..+-+...-+.=|+.
T Consensus 244 Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 244 PDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999999775544434444455555555544444444554
No 156
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.17 E-value=0.0033 Score=71.39 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=80.7
Q ss_pred CceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhcccccc----------C-------
Q 002265 181 GEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN----------S------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~----------~------- 235 (945)
.++.|.+..++++.+.+...- .+-...+-+.++|++|+|||++|+++++..... +
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 457889999888887763210 001234568999999999999999998864211 0
Q ss_pred --------------------------CceEEEEEcCccCCC-------cCCh-----hhHHhhccCC--CCCcEEEEEcC
Q 002265 236 --------------------------RKKIFLVLDDVWDGN-------CNKW-----EPFFRCLKND--LHGGKILVTTR 275 (945)
Q Consensus 236 --------------------------~~~~LlvlDdv~~~~-------~~~~-----~~l~~~~~~~--~~gs~iiiTtr 275 (945)
++.++|+||+++... .... ..+...+... ..+..||.||.
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 257899999996421 0111 1222222211 13445666776
Q ss_pred chHHHHHhcC---CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 276 NVSVARMMGT---TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 276 ~~~~~~~~~~---~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
..+.....-. .-+..+++...+.++..++|..+..
T Consensus 342 ~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 342 REDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 5543322111 1134699999999999999998763
No 157
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.17 E-value=0.0021 Score=73.60 Aligned_cols=150 Identities=19% Similarity=0.130 Sum_probs=87.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC---------------------------------CceEEEEEcCccCCCcC
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------RKKIFLVLDDVWDGNCN 252 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------~~~~LlvlDdv~~~~~~ 252 (945)
....+.|+|..|+|||+|++++.+...... .+--+|||||+......
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK 226 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC
Confidence 345689999999999999999987753221 11238999999653211
Q ss_pred C--hhhHHhhccC-CCCCcEEEEEcCchH---------HHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHH
Q 002265 253 K--WEPFFRCLKN-DLHGGKILVTTRNVS---------VARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREK 320 (945)
Q Consensus 253 ~--~~~l~~~~~~-~~~gs~iiiTtr~~~---------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~ 320 (945)
. .+.+...+.. ...|..||+||.... +...+.. +.++++++.+.++-.+++.+.+-......+
T Consensus 227 ~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--gl~v~i~~pd~~~r~~il~~~~~~~~~~l~--- 301 (450)
T PRK00149 227 ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW--GLTVDIEPPDLETRIAILKKKAEEEGIDLP--- 301 (450)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcC--CeeEEecCCCHHHHHHHHHHHHHHcCCCCC---
Confidence 1 1223332221 113445888876531 1222322 237999999999999999998753221122
Q ss_pred HHHHHHHHHHHcCCChhHH----HHHHHH--hcCC-CCHHHHHHHHhh
Q 002265 321 LESIGRKIARNCKGLPLAA----KVIGNL--LRSK-STVEEWESILES 361 (945)
Q Consensus 321 ~~~~~~~i~~~c~glPLai----~~~~~~--L~~~-~~~~~w~~~l~~ 361 (945)
.++..-|++.+.|-.-.+ ..+..+ +.++ -+.+..+.++..
T Consensus 302 -~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 302 -DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred -HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 345667777777755432 222211 1222 256666666654
No 158
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.0037 Score=67.08 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=91.5
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc-----C-----------------------------
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-----S----------------------------- 235 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-----~----------------------------- 235 (945)
.+.+...+.. +.-.+.+-+.|+.|+||+++|+.+....-.. .
T Consensus 11 ~~~l~~~~~~----~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 11 YQQITQAFQQ----GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred HHHHHHHHHc----CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 3445555543 2235788899999999999998766432110 0
Q ss_pred -------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCCC
Q 002265 236 -------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTELDIISIEQ 295 (945)
Q Consensus 236 -------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~~ 295 (945)
+++-++|+|++...+......+...+.....++.+|++|.+. .+.....+. ...+.+.+
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR-C~~~~~~~ 165 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR-CQTWLIHP 165 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh-ceEEeCCC
Confidence 555677889998877667777888887777788877777664 444333222 34899999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 296 LAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 296 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
++.++..+.+..... . +. ..+...+..++|-|+.+
T Consensus 166 ~~~~~~~~~L~~~~~---~--~~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 166 PEEQQALDWLQAQSS---A--EI----SEILTALRINYGRPLLA 200 (325)
T ss_pred CCHHHHHHHHHHHhc---c--Ch----HHHHHHHHHcCCCHHHH
Confidence 999999988876541 1 11 12456788899999633
No 159
>PTZ00202 tuzin; Provisional
Probab=97.16 E-value=0.00078 Score=72.82 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=44.1
Q ss_pred ccccCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 176 SLIDEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 176 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...+.++|+||+.+..++...|...+. ...+++.|.|++|+|||||++.+.....
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~--~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT--AHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC--CCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344567899999999999999864332 2356999999999999999999986543
No 160
>PF14516 AAA_35: AAA-like domain
Probab=97.13 E-value=0.014 Score=63.76 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=97.2
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------- 235 (945)
+.+..|.|...-+++.+.+... -..+.|.|+-.+|||+|...+.+......
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 4456778886666677777542 24899999999999999988765543211
Q ss_pred -------------------------------------------CceEEEEEcCccCCCc--CChhhHHhhcc---CCC--
Q 002265 236 -------------------------------------------RKKIFLVLDDVWDGNC--NKWEPFFRCLK---NDL-- 265 (945)
Q Consensus 236 -------------------------------------------~~~~LlvlDdv~~~~~--~~~~~l~~~~~---~~~-- 265 (945)
.++.+|++|+|+.... .-.+++...+. ...
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 7899999999975422 11122222221 111
Q ss_pred ---CCcEEEEEcCchH--HHHHhcCC---CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 266 ---HGGKILVTTRNVS--VARMMGTT---ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 266 ---~gs~iiiTtr~~~--~~~~~~~~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
...-.+|...+.. ........ -+..+++.+++.+|..+|...+-.. .. ....++|....+|+|-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGGHPY 234 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCCCHH
Confidence 1111222222211 11111000 1236889999999999999876431 11 1127889999999999
Q ss_pred HHHHHHHHhcCC
Q 002265 338 AAKVIGNLLRSK 349 (945)
Q Consensus 338 ai~~~~~~L~~~ 349 (945)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999764
No 161
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00047 Score=69.64 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=45.0
Q ss_pred CCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCC--cccccccCCcEEEEecCCCCCc
Q 002265 711 KKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFP--KWLTSLTNLRELRLVSCVDCEH 788 (945)
Q Consensus 711 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~ 788 (945)
++++.++.+..|.+. .....++..++|.+..|++..+.+...- ..+..+++|..|.+++++..+.
T Consensus 198 Fpnv~sv~v~e~PlK-------------~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLK-------------TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchheeeecCccc-------------chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 567777777777532 1233445677888888888777643311 1234789999999999987776
Q ss_pred CCC
Q 002265 789 LPP 791 (945)
Q Consensus 789 l~~ 791 (945)
+..
T Consensus 265 l~~ 267 (418)
T KOG2982|consen 265 LRG 267 (418)
T ss_pred ccC
Confidence 543
No 162
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.10 E-value=0.0045 Score=60.46 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=35.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.++||.++.++.+.-...+ ++..-+.|.||+|+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~-----gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE-----GNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc-----CCCCceEeeCCCCCchhhHHHHHHHH
Confidence 5799999999887655432 35677899999999999987766554
No 163
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.05 E-value=0.0027 Score=71.95 Aligned_cols=123 Identities=19% Similarity=0.141 Sum_probs=73.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-------C---------------------------CceEEEEEcCccCCCc-
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-------S---------------------------RKKIFLVLDDVWDGNC- 251 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------~---------------------------~~~~LlvlDdv~~~~~- 251 (945)
..-+.|||..|+|||+|++++.+..... + .+.-+|++||+.....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 4469999999999999999998864221 1 0234899999974311
Q ss_pred CCh-hhHHhhccC-CCCCcEEEEEcC-chHHHH--------HhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHH
Q 002265 252 NKW-EPFFRCLKN-DLHGGKILVTTR-NVSVAR--------MMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREK 320 (945)
Q Consensus 252 ~~~-~~l~~~~~~-~~~gs~iiiTtr-~~~~~~--------~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~ 320 (945)
..+ +.+...+.. ...|..||+||. ...-.. .+.. +-++++++.+.+.-.+++.+.+......-+
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~--gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~--- 284 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM--GLVAKLEPPDEETRKKIARKMLEIEHGELP--- 284 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc--CceEeeCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 111 223222221 123456888874 332211 2222 237899999999999999988753222222
Q ss_pred HHHHHHHHHHHcCCC
Q 002265 321 LESIGRKIARNCKGL 335 (945)
Q Consensus 321 ~~~~~~~i~~~c~gl 335 (945)
.++..-|++.+.|-
T Consensus 285 -~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 285 -EEVLNFVAENVDDN 298 (440)
T ss_pred -HHHHHHHHhccccC
Confidence 34556666666653
No 164
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0034 Score=65.71 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=98.1
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++-|-++.+++|.+...-.-. +-+..+=|-+||++|.|||-||++|+++....|
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 5677889999888887643211 123456688999999999999999999977655
Q ss_pred ------------CceEEEEEcCccCCC--------------cCChhhHHhhccCC--CCCcEEEEEcCchHHHHHhcCC-
Q 002265 236 ------------RKKIFLVLDDVWDGN--------------CNKWEPFFRCLKND--LHGGKILVTTRNVSVARMMGTT- 286 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~--------------~~~~~~l~~~~~~~--~~gs~iiiTtr~~~~~~~~~~~- 286 (945)
.....|++|.++..- +..+-++...+... ...-|||..|...++....--.
T Consensus 231 RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRP 310 (406)
T COG1222 231 RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRP 310 (406)
T ss_pred HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCC
Confidence 678899999885410 11122222223222 3456999988876655432111
Q ss_pred --CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh----hHHHHHHHHh
Q 002265 287 --ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP----LAAKVIGNLL 346 (945)
Q Consensus 287 --~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----Lai~~~~~~L 346 (945)
-++.+++..-+.+.-.++|.-+.-.-. -...-+++ .+++.+.|.- -|+.+=|+++
T Consensus 311 GR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 311 GRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCchHHHHHHHHHHhHH
Confidence 145788886666666777776653222 12223333 3556666554 3344445544
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.03 E-value=0.0045 Score=72.83 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=86.6
Q ss_pred CceecchhHHHHHHHH---Hhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSK---LCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~---l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.++..+++.+. +..... +....+-|.++|++|+|||+||+++++.....+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHH
Confidence 4688887766655444 332211 112245689999999999999999987543211
Q ss_pred -----------CceEEEEEcCccCCC----------cCChhh-HHhhc---cC--CCCCcEEEEEcCchHHHHH-hcC--
Q 002265 236 -----------RKKIFLVLDDVWDGN----------CNKWEP-FFRCL---KN--DLHGGKILVTTRNVSVARM-MGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~----------~~~~~~-l~~~~---~~--~~~gs~iiiTtr~~~~~~~-~~~-- 285 (945)
....+|++|+++... ...++. +...+ .. ...+-.||.||...+.... +-.
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpG 342 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPG 342 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccc
Confidence 456799999995421 011112 22222 11 2345567777766544332 211
Q ss_pred CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC
Q 002265 286 TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG 334 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 334 (945)
.-+..+.+...+.++-.++++.++-.... .. ......+++.+.|
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 11347889999999999999887643111 11 1234567777776
No 166
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0036 Score=67.01 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=89.4
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc------------------------------------
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV------------------------------------ 233 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~------------------------------------ 233 (945)
.+.+...+.. +.-.+.+-++|+.|+||+++|..+....-.
T Consensus 13 ~~~l~~~~~~----~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 13 YDQTVAALDA----GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHc----CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 4455555543 234668999999999999999765532100
Q ss_pred --cC-------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCceee
Q 002265 234 --NS-------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTELDII 291 (945)
Q Consensus 234 --~~-------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~~~~ 291 (945)
.. +++-++|+|++...+...-..+...+..-..++.+|++|.+ ..+...+.+. ...+
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR-Cq~i 167 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR-CQRL 167 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh-heEe
Confidence 00 44557788888776555556666667666667777777765 3444333322 3478
Q ss_pred eCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 292 SIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 292 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
.+.+++.+++.+.+.... . . ...+..++..++|-|+....+
T Consensus 168 ~~~~~~~~~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred eCCCcCHHHHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988886531 1 1 122567899999999866543
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.03 E-value=0.0054 Score=62.56 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=34.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
..+.++......+..++.. ..+|.+.|++|+|||+||.++..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHH
Confidence 4577888888888888853 23899999999999999987655
No 168
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.99 E-value=0.0019 Score=62.31 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=69.3
Q ss_pred cchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------
Q 002265 185 GRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------------- 235 (945)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------------- 235 (945)
|.++..+.+...+..+ .-.+.+-++|..|+||+|+|..+.+..-...
T Consensus 1 gq~~~~~~L~~~~~~~----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 76 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD 76 (162)
T ss_dssp S-HHHHHHHHHHHHCT----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT
T ss_pred CcHHHHHHHHHHHHcC----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc
Confidence 4556666666666542 2356789999999999999987664321000
Q ss_pred ------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCcee
Q 002265 236 ------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDI 290 (945)
Q Consensus 236 ------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~ 290 (945)
+++=++|+|++.....+.+..+...+.....++.+|++|++.. +....... ...
T Consensus 77 ~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR-c~~ 155 (162)
T PF13177_consen 77 KKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR-CQV 155 (162)
T ss_dssp TSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT-SEE
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh-ceE
Confidence 4566788999998877788888888888888999998888754 34333332 346
Q ss_pred eeCCCCC
Q 002265 291 ISIEQLA 297 (945)
Q Consensus 291 ~~l~~l~ 297 (945)
+.+.+++
T Consensus 156 i~~~~ls 162 (162)
T PF13177_consen 156 IRFRPLS 162 (162)
T ss_dssp EEE----
T ss_pred EecCCCC
Confidence 6666653
No 169
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0034 Score=71.20 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=43.9
Q ss_pred cCCceecchhHHHHHHHHHhccc-cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 179 DEGEVCGRVDEKNELLSKLCESS-EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~-~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
-+.+-+|+++-.++|++++.-.. .+.-+-+++..+|++|||||.+|+.++.....+|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 45678999999999999985321 1123457999999999999999999987655443
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0091 Score=64.24 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=99.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc----------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---------------------------- 232 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~---------------------------- 232 (945)
.+++|.+...+.+...+... .-.+..-++|+.|+||+++|..+.+..-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 46899999999999888643 2357899999999999999866543210
Q ss_pred ---c--------------------------c-----------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEE
Q 002265 233 ---V--------------------------N-----------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILV 272 (945)
Q Consensus 233 ---~--------------------------~-----------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iii 272 (945)
. + .+++-++|+|++...+......+...+.... .+.+|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 0 0 0556678889987766566667777776555 445554
Q ss_pred Ec-CchHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHH
Q 002265 273 TT-RNVSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKV 341 (945)
Q Consensus 273 Tt-r~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 341 (945)
+| ....+...+... ...+.+.++++++..+.+........ .. .....++..++|-|..+..
T Consensus 159 i~~~~~~Ll~TI~SR-cq~i~f~~l~~~~~~~~L~~~~~~~~---~~----~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 159 IAPSPESLLPTIVSR-CQIIPFYRLSDEQLEQVLKRLGDEEI---LN----INFPELLALAQGSPGAAIA 220 (314)
T ss_pred EECChHhCcHHHHhh-ceEEecCCCCHHHHHHHHHHhhcccc---ch----hHHHHHHHHcCCCHHHHHH
Confidence 44 444444444333 45899999999999999987642111 11 1135788899999965544
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0062 Score=66.38 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=83.1
Q ss_pred ceec-chhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 182 EVCG-RVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 182 ~~vg-r~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.++| .+..++.+...+... .-.+..-++|+.|+||||+|+.+.+..-..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 3566 555666676666532 246778999999999999998774432100
Q ss_pred --------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCC
Q 002265 235 --------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTE 287 (945)
Q Consensus 235 --------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~ 287 (945)
.+++-++|+|++...+......+...+.....++.+|++|.+. .+...+...
T Consensus 82 ~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR- 160 (329)
T PRK08058 82 LVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR- 160 (329)
T ss_pred EeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh-
Confidence 0445578889997766556677888887777788877777653 333333322
Q ss_pred ceeeeCCCCChHHHHHHHHH
Q 002265 288 LDIISIEQLAEEECWSLFER 307 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~ 307 (945)
...+++.+++.++..+.+..
T Consensus 161 c~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 161 CQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceeeeCCCCCHHHHHHHHHH
Confidence 35899999999999888865
No 172
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.93 E-value=0.021 Score=60.48 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=81.1
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------- 235 (945)
.++.|.+|+..+..+...+...+. .-...|-|+|-+|.|||.+.+++++.....+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC--TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc--ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc
Confidence 356789999999999998876542 2355678999999999999999988763222
Q ss_pred --------------------------------CceEEEEEcCccCCCcCChhh-HHhhc----cCCCCCcEEEEEcCchH
Q 002265 236 --------------------------------RKKIFLVLDDVWDGNCNKWEP-FFRCL----KNDLHGGKILVTTRNVS 278 (945)
Q Consensus 236 --------------------------------~~~~LlvlDdv~~~~~~~~~~-l~~~~----~~~~~gs~iiiTtr~~~ 278 (945)
++.++||||++.... +.+. +...+ .-.....-+|+++-...
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 468999999996532 2221 11111 11112233444443322
Q ss_pred H---HHHhcCCCceeeeCCCCChHHHHHHHHHH
Q 002265 279 V---ARMMGTTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 279 ~---~~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
. ...++.....++....-+.+|..+++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 22245554446777888999999988653
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.88 E-value=0.0043 Score=76.61 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=73.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+..+.....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 359999999999999997532 23455899999999999988776531100
Q ss_pred -----------------CceEEEEEcCccCCC-----cCChhhHHhhcc-CCCCC-cEEEEEcCchHHHHH------hcC
Q 002265 236 -----------------RKKIFLVLDDVWDGN-----CNKWEPFFRCLK-NDLHG-GKILVTTRNVSVARM------MGT 285 (945)
Q Consensus 236 -----------------~~~~LlvlDdv~~~~-----~~~~~~l~~~~~-~~~~g-s~iiiTtr~~~~~~~------~~~ 285 (945)
+++.+|++|++.... ....+. ...+. ....| -++|-+|.....-.. +..
T Consensus 248 g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~-~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~r 326 (852)
T TIGR03346 248 GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDA-GNMLKPALARGELHCIGATTLDEYRKYIEKDAALER 326 (852)
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHH-HHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHh
Confidence 357899999996421 011111 11111 11222 244544444332111 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHH
Q 002265 286 TELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
. ...+.+...+.++..+++...
T Consensus 327 R-f~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 327 R-FQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred c-CCEEEeCCCCHHHHHHHHHHH
Confidence 1 236889999999999988754
No 174
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.00094 Score=69.40 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=42.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC-------------------------------CceEEEEEcCccCCCcCChh-
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------RKKIFLVLDDVWDGNCNKWE- 255 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------~~~~LlvlDdv~~~~~~~~~- 255 (945)
.-+.++|++|+|||+||.++........ .+.-+||+||+.....+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~ 178 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAA 178 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHH
Confidence 4589999999999999988765432111 33458999999754322332
Q ss_pred -hHHhhccCC-CCCcEEEEEcCch
Q 002265 256 -PFFRCLKND-LHGGKILVTTRNV 277 (945)
Q Consensus 256 -~l~~~~~~~-~~gs~iiiTtr~~ 277 (945)
.+...+... ..+ .+|+||...
T Consensus 179 ~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 179 NLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred HHHHHHHHHHHhcC-CEEEEcCCC
Confidence 233333221 223 488888753
No 175
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.87 E-value=0.001 Score=61.86 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=19.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+-+.+.|+|.+|+|||++++.+.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999988864
No 176
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.0083 Score=65.10 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=91.9
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc----------------------------------C
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN----------------------------------S 235 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~----------------------------------~ 235 (945)
.+++...+.. +.-.+.+-+.|+.|+||+++|..++...-.. .
T Consensus 11 ~~~l~~~~~~----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 11 YEQLVGSYQA----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred HHHHHHHHHc----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4555555543 2346789999999999999998765432110 0
Q ss_pred --------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCC
Q 002265 236 --------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTELDIISIE 294 (945)
Q Consensus 236 --------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~ 294 (945)
+++-++|+|++...+......+...+.....++.+|++|.+. .+...+.+. ...+.+.
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR-Cq~~~~~ 165 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR-CRLHYLA 165 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-cccccCC
Confidence 566678889998776666677777787777777777777654 444333322 2378999
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 295 QLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 295 ~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
+++.+++.+.+..... .+ .+.+..++..++|.|....
T Consensus 166 ~~~~~~~~~~L~~~~~-----~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 166 PPPEQYALTWLSREVT-----MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCHHHHHHHHHHccC-----CC----HHHHHHHHHHcCCCHHHHH
Confidence 9999999888765321 11 1235678999999996443
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0028 Score=75.98 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=74.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
..++||++++.++++.|.... ..-+.++|.+|+|||++|+.+++.....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-----~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~ 260 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-----CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchh
Confidence 359999999999999887632 1234589999999999999887542100
Q ss_pred ---------------CCceEEEEEcCccCC------CcCChh--hHHhhccCCCCCcEEEEEcCchHHHHH------hcC
Q 002265 235 ---------------SRKKIFLVLDDVWDG------NCNKWE--PFFRCLKNDLHGGKILVTTRNVSVARM------MGT 285 (945)
Q Consensus 235 ---------------~~~~~LlvlDdv~~~------~~~~~~--~l~~~~~~~~~gs~iiiTtr~~~~~~~------~~~ 285 (945)
..+..+|++|++... ...+.+ .+..++...+ .-+||-+|...+..+. +..
T Consensus 261 Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~r 339 (758)
T PRK11034 261 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHh
Confidence 034579999999632 111112 2222222221 2345545544332111 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHH
Q 002265 286 TELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
. -..+.+.+++.+++.+++...
T Consensus 340 R-Fq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 340 R-FQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred h-CcEEEeCCCCHHHHHHHHHHH
Confidence 1 237999999999999998754
No 178
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0088 Score=64.01 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=92.0
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc---------------------------------C-
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN---------------------------------S- 235 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~---------------------------------~- 235 (945)
.+++...+.. +.-.+.+-+.|+.|+||+++|+.+....-.. .
T Consensus 12 ~~~l~~~~~~----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 12 WQNWKAGLDA----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHc----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 3445554432 2346789999999999999998765432100 0
Q ss_pred -------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCCC
Q 002265 236 -------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTELDIISIEQ 295 (945)
Q Consensus 236 -------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~~ 295 (945)
+++-++|+|++...+......+...+.....++.+|++|.+. .+...+.+. ...+.+.+
T Consensus 88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR-Cq~~~~~~ 166 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR-CQQWVVTP 166 (319)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-ceeEeCCC
Confidence 445577889998776667777888887777778777766654 444443332 34899999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 296 LAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 296 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
++.+++.+.+.... . . .+..++..++|-|+....+
T Consensus 167 ~~~~~~~~~L~~~~----~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 167 PSTAQAMQWLKGQG----I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCHHHHHHHHHHcC----C--c------hHHHHHHHcCCCHHHHHHH
Confidence 99999998886531 1 1 1346788999999876544
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.83 E-value=0.0037 Score=76.74 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=37.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-----cCceEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999997643 2345699999999999998887654
No 180
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.001 Score=69.48 Aligned_cols=68 Identities=26% Similarity=0.206 Sum_probs=43.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccc-----C--------------------------CceEEEEEcCccCCCcCChh--
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVN-----S--------------------------RKKIFLVLDDVWDGNCNKWE-- 255 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~-----~--------------------------~~~~LlvlDdv~~~~~~~~~-- 255 (945)
-+.++|++|+|||.||.++.+..... + .+--|||+||+.......|.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~ 187 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETS 187 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHH
Confidence 48999999999999999887543211 1 23348999999754433332
Q ss_pred hHHhhccCCCCCcEEEEEcCc
Q 002265 256 PFFRCLKNDLHGGKILVTTRN 276 (945)
Q Consensus 256 ~l~~~~~~~~~gs~iiiTtr~ 276 (945)
.+...+.....+..+||||..
T Consensus 188 ~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 188 VLFELISARYERRSILITANQ 208 (269)
T ss_pred HHHHHHHHHHhCCCEEEEcCC
Confidence 233333322122468888875
No 181
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.78 E-value=0.0016 Score=57.91 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=29.0
Q ss_pred EEEEecCCCcHHHHHHHHhcccccc---------------------CCceEEEEEcCccCCC
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVN---------------------SRKKIFLVLDDVWDGN 250 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~---------------------~~~~~LlvlDdv~~~~ 250 (945)
|-|+|.+|+|||++|+.++.+.... +...-.+|+||++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 4589999999999999866432210 1344568889998654
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.77 E-value=0.0081 Score=70.22 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=39.7
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
-.+++|.+..++++..++..........+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999998754322234468999999999999999877643
No 183
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.75 E-value=0.0013 Score=61.75 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=60.3
Q ss_pred ecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------CceEEEEEcC
Q 002265 184 CGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------RKKIFLVLDD 245 (945)
Q Consensus 184 vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~~~LlvlDd 245 (945)
||.-..++++.+.+..-.. ....|.|+|..|+||+++|+.++....... -+.--++|+|
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~ 77 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKN 77 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECC
Confidence 4666777777777654332 334689999999999999999887654321 2344567899
Q ss_pred ccCCCcCChhhHHhhccCC-CCCcEEEEEcCc
Q 002265 246 VWDGNCNKWEPFFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 246 v~~~~~~~~~~l~~~~~~~-~~gs~iiiTtr~ 276 (945)
+..-+.+....+...+... ....|+|.||+.
T Consensus 78 i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 78 IDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp GCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred hHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 9776555556666666543 567799999874
No 184
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0088 Score=64.85 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=110.9
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------- 235 (945)
.+..++||+.++..+.+|+...-+ .+....+-|.|.+|.|||.+...++.+.....
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle-~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE-LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh-cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 466799999999999999875443 33456789999999999999988877643211
Q ss_pred ----------------------------CceEEEEEcCccCCCcCChhhHHhhccCC-CCCcEEEEEcC--chH-----H
Q 002265 236 ----------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-LHGGKILVTTR--NVS-----V 279 (945)
Q Consensus 236 ----------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~gs~iiiTtr--~~~-----~ 279 (945)
..-+++|+|..+.-....-..+...|.+. -+++++|+.-- .-+ +
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 34789999988653222333444445443 36677665421 111 1
Q ss_pred HHHh--cCCCceeeeCCCCChHHHHHHHHHHhccCC-CCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhc
Q 002265 280 ARMM--GTTELDIISIEQLAEEECWSLFERLVFFDR-SSEDREKLESIGRKIARNCKGLPLAAKVIGNLLR 347 (945)
Q Consensus 280 ~~~~--~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 347 (945)
.+.. ....+..+...|.+.++-.++|..+.-... .......++-.|++++...|.+--|+.+.-+++.
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 1111 122345788899999999999998864322 2233446677777777777888888887766653
No 185
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.72 E-value=0.01 Score=68.83 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=84.1
Q ss_pred CceecchhHHHHHHHHHh---ccc----cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLC---ESS----EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~---~~~----~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+...+++.+.+. ... .+....+-+.++|++|+|||++|+++++.....+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~ 134 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS 134 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHH
Confidence 468888877666655432 110 0012234588999999999999999987653222
Q ss_pred -----------CceEEEEEcCccCCCc----------CChhhHH----hhcc--CCCCCcEEEEEcCchHHHHH-hcC--
Q 002265 236 -----------RKKIFLVLDDVWDGNC----------NKWEPFF----RCLK--NDLHGGKILVTTRNVSVARM-MGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~----------~~~~~l~----~~~~--~~~~gs~iiiTtr~~~~~~~-~~~-- 285 (945)
....+|++|+++.... ..+.... ..+. ....+-.||.||........ +-.
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~g 214 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPG 214 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCC
Confidence 3447999999954210 1111111 1111 11234456667765432221 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC
Q 002265 286 TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 335 (945)
.-+..+.+...+.++-.++|..+.-.... ..... ...+++.+.|.
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 11347899999999999999877632211 11111 33677777763
No 186
>PRK09183 transposase/IS protein; Provisional
Probab=96.72 E-value=0.0015 Score=68.26 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..+.|+|+.|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999987543
No 187
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.66 E-value=0.036 Score=54.94 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=60.4
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------- 235 (945)
+-..++|.|...+.+++--..=.. +....-|-+||.-|.||+.|++++.+......
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~-G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~ 136 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE-GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRA 136 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc-CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhc
Confidence 345789999888877653321110 12344688999999999999999998866544
Q ss_pred -CceEEEEEcCccCC-CcCChhhHHhhccCC
Q 002265 236 -RKKIFLVLDDVWDG-NCNKWEPFFRCLKND 264 (945)
Q Consensus 236 -~~~~LlvlDdv~~~-~~~~~~~l~~~~~~~ 264 (945)
.+||.|+.||...+ ..+.+..+...+..+
T Consensus 137 ~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 137 RPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred CCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 88999999999643 345666677777644
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.65 E-value=0.0079 Score=73.11 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=59.0
Q ss_pred CCceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
...++|.+..++.+...+..... .+....++.++|+.|+|||+||+.++.......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~ 532 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGA 532 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcC
Confidence 45688999888888887764211 112245688999999999999998876542110
Q ss_pred -------------------CceEEEEEcCccCCCcCChhhHHhhccC
Q 002265 236 -------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKN 263 (945)
Q Consensus 236 -------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~ 263 (945)
...-+++||++.....+.+..+...+..
T Consensus 533 ~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 533 PPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred CCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 2345999999988776667777776654
No 189
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.00077 Score=66.07 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=40.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC-------------------------------CceEEEEEcCccCCCcCChh
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------RKKIFLVLDDVWDGNCNKWE 255 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------~~~~LlvlDdv~~~~~~~~~ 255 (945)
..-+.++|..|+|||.||.++.+...... .+-=||||||+.......|.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~~~ 126 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSEWE 126 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---HHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeeecccc
Confidence 34699999999999999988876533221 23348899999765433443
Q ss_pred h--HHhhccCC-CCCcEEEEEcCc
Q 002265 256 P--FFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 256 ~--l~~~~~~~-~~gs~iiiTtr~ 276 (945)
. +...+... .++ .+||||..
T Consensus 127 ~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 127 AELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp HHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccchhhhhHhhccc-CeEeeCCC
Confidence 2 22212111 123 57888874
No 190
>PRK08116 hypothetical protein; Validated
Probab=96.61 E-value=0.0029 Score=66.59 Aligned_cols=69 Identities=26% Similarity=0.258 Sum_probs=44.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC----------------------------------CceEEEEEcCccCCCcCC
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------------------RKKIFLVLDDVWDGNCNK 253 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------------------~~~~LlvlDdv~~~~~~~ 253 (945)
..+.++|..|+|||+||.++++...... ..-=||||||+.......
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~ 194 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTE 194 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCH
Confidence 3588999999999999999988642111 122389999996543345
Q ss_pred hhh--HHhhccC-CCCCcEEEEEcCc
Q 002265 254 WEP--FFRCLKN-DLHGGKILVTTRN 276 (945)
Q Consensus 254 ~~~--l~~~~~~-~~~gs~iiiTtr~ 276 (945)
|.. +...+.. ...|..+||||..
T Consensus 195 ~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 195 WAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 543 3332221 1345679999875
No 191
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.0087 Score=59.59 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=83.5
Q ss_pred CCceecchhHHHH---HHHHHhcccc-CCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 180 EGEVCGRVDEKNE---LLSKLCESSE-QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~---l~~~l~~~~~-~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
-.++||.++...+ |++.|..... ++...+-|..+|++|.|||.+|+++.+...+-.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~I 199 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRI 199 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHH
Confidence 4578998876543 5566654321 234578899999999999999999999876543
Q ss_pred ---------CceEEEEEcCccCCC--------cCCh----hhHHhhcc--CCCCCcEEEEEcCchHHHHH-hcCCCceee
Q 002265 236 ---------RKKIFLVLDDVWDGN--------CNKW----EPFFRCLK--NDLHGGKILVTTRNVSVARM-MGTTELDII 291 (945)
Q Consensus 236 ---------~~~~LlvlDdv~~~~--------~~~~----~~l~~~~~--~~~~gs~iiiTtr~~~~~~~-~~~~~~~~~ 291 (945)
.-.+.+++|.++..- ..+. ..+...+. ..+.|-.-|-.|....+... ....-..-+
T Consensus 200 hely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEI 279 (368)
T COG1223 200 HELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEI 279 (368)
T ss_pred HHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhhee
Confidence 457899999874321 0111 22222222 12456566666666555443 222222357
Q ss_pred eCCCCChHHHHHHHHHHhc
Q 002265 292 SIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 292 ~l~~l~~~~~~~lf~~~~~ 310 (945)
+..--+++|-.+++..++-
T Consensus 280 EF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 280 EFKLPNDEERLEILEYYAK 298 (368)
T ss_pred eeeCCChHHHHHHHHHHHH
Confidence 7788889999999988873
No 192
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.58 E-value=0.015 Score=64.86 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=69.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccC---------------------------CceEEEEEcCccCCCcCChhhHHhhc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------RKKIFLVLDDVWDGNCNKWEPFFRCL 261 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~ 261 (945)
++.|.|+-++||||+++.+........ .++.+|+||.|... ..|+.....+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~lk~l 116 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV--PDWERALKYL 116 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc--hhHHHHHHHH
Confidence 999999999999999987766543320 35679999999775 5899988888
Q ss_pred cCCCCCcEEEEEcCchHHHH-----HhcCCCceeeeCCCCChHHHHHHH
Q 002265 262 KNDLHGGKILVTTRNVSVAR-----MMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 262 ~~~~~gs~iiiTtr~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
.+.++. +|+||+-+..+.. ..... ...+.+.||+-.|...+-
T Consensus 117 ~d~~~~-~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 117 YDRGNL-DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKLK 163 (398)
T ss_pred Hccccc-eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhhc
Confidence 887766 8999887754432 22222 347899999998876654
No 193
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.56 E-value=0.006 Score=67.42 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=36.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.++++.++..+.+...|... +.|.++|++|+|||++|+.+++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-------~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-------KNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-------CCEEEECCCCCCHHHHHHHHHHHh
Confidence 45788899999999988642 357889999999999999987654
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.56 E-value=0.0038 Score=61.92 Aligned_cols=38 Identities=29% Similarity=0.280 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 002265 185 GRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
++..+....++.|.. ..++.+.|++|.|||.||.+..-
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al 41 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAAL 41 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHH
Confidence 455566666666652 34899999999999999976553
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.55 E-value=0.002 Score=69.09 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=50.2
Q ss_pred ceecchhHHHHHHHHHhccccC-CCCeEEEEEEecCCCcHHHHHHHHhcccccc----CCceEEEEEcCc
Q 002265 182 EVCGRVDEKNELLSKLCESSEQ-QKGLHVISLVGLGGIGKTTLAQLAYNNDEVN----SRKKIFLVLDDV 246 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~-~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~----~~~~~LlvlDdv 246 (945)
+++|.++.++++++++.....+ +...++++++|++|+||||||+.+.+....- .+..|-+-.+++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 7999999999999999764432 2346889999999999999999998876542 256666655443
No 196
>PRK12377 putative replication protein; Provisional
Probab=96.51 E-value=0.004 Score=64.22 Aligned_cols=70 Identities=21% Similarity=0.106 Sum_probs=44.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC--------------------------------CceEEEEEcCccCCCcCCh
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------------------RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------------------~~~~LlvlDdv~~~~~~~~ 254 (945)
...+.++|..|+|||+||.++.+...... .+--||||||+.......|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 35789999999999999999887654221 2333899999965433455
Q ss_pred hh--HHhhccCC-CCCcEEEEEcCc
Q 002265 255 EP--FFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 255 ~~--l~~~~~~~-~~gs~iiiTtr~ 276 (945)
.. +...+... .+.--+||||..
T Consensus 181 ~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 181 EQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 43 33333221 223347777763
No 197
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.51 E-value=0.0053 Score=75.20 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCceecchhHHHHHHHHHhccc----cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESS----EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~----~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
...++|.+..++.+.+.+.... .......++.++|+.|+|||.||+++........
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence 4579999999999988875421 1122355789999999999999987654321000
Q ss_pred ----------------------CceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 236 ----------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 236 ----------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
...-+|+||++...+++.++.+...+..+. ..+-||+||..
T Consensus 645 ~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 645 KGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 244589999998777666777776665442 44567777764
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0018 Score=61.03 Aligned_cols=52 Identities=35% Similarity=0.310 Sum_probs=36.5
Q ss_pred EEEEecCCCcHHHHHHHHhccccccC------------------------------------CceEEEEEcCccCCCcCC
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNS------------------------------------RKKIFLVLDDVWDGNCNK 253 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~------------------------------------~~~~LlvlDdv~~~~~~~ 253 (945)
|-++|.+|+|||+||+.++....... .+..++|||++.....+-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v 81 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEV 81 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHH
Confidence 67899999999999999886542211 578999999998654444
Q ss_pred hhhHHhhc
Q 002265 254 WEPFFRCL 261 (945)
Q Consensus 254 ~~~l~~~~ 261 (945)
+..+...+
T Consensus 82 ~~~L~~ll 89 (139)
T PF07728_consen 82 LESLLSLL 89 (139)
T ss_dssp HHTTHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 199
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.49 E-value=0.00032 Score=79.10 Aligned_cols=124 Identities=22% Similarity=0.199 Sum_probs=84.3
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
+.++..+++..|.+..+..++.-++.|++|+++.|.. .. -+.+..+++|+.|| +++|.+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~------~~--v~~Lr~l~~LkhLD------------lsyN~L~ 222 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF------TK--VDNLRRLPKLKHLD------------LSYNCLR 222 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh------hh--hHHHHhcccccccc------------cccchhc
Confidence 4566666666666655556666678888888888762 11 23567788888888 5555666
Q ss_pred ccCcc-ccccCcccccccccccccccChhhhcCCcccEEEecCCCCcc---ccCcccccccCCCeeecCCCC
Q 002265 575 EIPKN-VRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLR---ELPAGIGKLMNMRSLLNGETY 642 (945)
Q Consensus 575 ~lp~~-i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~---~lP~~i~~L~~L~~L~l~~~~ 642 (945)
.+|.- ...+ +|..|.+++|.++.| ..|.+|.+|+.||++.|- +. ++-. ++.|..|+.|+|.||.
T Consensus 223 ~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 223 HVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 66531 1122 388888888888877 468888888888888875 32 2222 5678888888888874
No 200
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.49 E-value=0.0043 Score=66.43 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=58.1
Q ss_pred cchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------
Q 002265 185 GRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------------- 235 (945)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------------- 235 (945)
++........+++..-.. +...+-+.++|..|+|||.||.++++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~-~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP-GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHH
Confidence 454555555566653221 12345789999999999999999988753221
Q ss_pred --CceEEEEEcCccCCCcCChhh--HHhhc-cCC-CCCcEEEEEcCc
Q 002265 236 --RKKIFLVLDDVWDGNCNKWEP--FFRCL-KND-LHGGKILVTTRN 276 (945)
Q Consensus 236 --~~~~LlvlDdv~~~~~~~~~~--l~~~~-~~~-~~gs~iiiTtr~ 276 (945)
.+-=||||||+.......|.. +...+ ... ..+-.+|+||..
T Consensus 214 ~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 344589999998766667754 44433 222 245578888863
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.49 E-value=0.012 Score=72.49 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=65.0
Q ss_pred CCceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
...++|.+..++.+...+..... .+....++.++|+.|+|||++|+.+++......
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 45689999999888888764211 112235788999999999999998875421000
Q ss_pred ----------------------CceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 236 ----------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 236 ----------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
...-+|+||++.....+.+..+...+..+. ..+.||+||..
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 112489999998776666777777665431 22337778875
No 202
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.0062 Score=68.69 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=96.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
+++||.+--...|...+.... -...-...|+-|+||||+|+-++.......
T Consensus 16 ~evvGQe~v~~~L~nal~~~r----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dvi 91 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVI 91 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccch
Confidence 467999999988888886432 245566889999999999987765322110
Q ss_pred --------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCc
Q 002265 236 --------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTEL 288 (945)
Q Consensus 236 --------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~ 288 (945)
++.-..++|.|.-.+...|..+...+......-+.|+.|.+ ..+....-+. .
T Consensus 92 EiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR-c 170 (515)
T COG2812 92 EIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR-C 170 (515)
T ss_pred hhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc-c
Confidence 45556788999877667788887777766666666665555 3343322221 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG 334 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 334 (945)
..|.++.++.++-...+...+-......++ ....-|++..+|
T Consensus 171 q~f~fkri~~~~I~~~L~~i~~~E~I~~e~----~aL~~ia~~a~G 212 (515)
T COG2812 171 QRFDFKRLDLEEIAKHLAAILDKEGINIEE----DALSLIARAAEG 212 (515)
T ss_pred ccccccCCCHHHHHHHHHHHHHhcCCccCH----HHHHHHHHHcCC
Confidence 489999999998888887776543332332 233445555555
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.024 Score=59.73 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
-|-++|++|+|||++|+.++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999998753
No 204
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.46 E-value=0.014 Score=67.81 Aligned_cols=44 Identities=27% Similarity=0.482 Sum_probs=35.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.+++|.+..++.+...+... ...-|-|+|..|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~-----~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP-----NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999988776432 234568999999999999999864
No 205
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.45 E-value=0.013 Score=70.52 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=64.3
Q ss_pred CceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------- 235 (945)
..++|.++.++.+...+..... .+.....+-++|+.|+|||++|+.+........
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 4589999999988888763211 112345788999999999999998876542111
Q ss_pred ------------------CceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcC
Q 002265 236 ------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTR 275 (945)
Q Consensus 236 ------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr 275 (945)
...-+|+||++.....+-+..+...+..+. .++-||+||.
T Consensus 538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 234589999998876666666766665331 2334777775
No 206
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00053 Score=69.27 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=35.9
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcC-CCCCCccEEEEEeeCC--CCCCcccccccCCcEEEEec
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL-QPPLNLEEFGIVFYGG--NIFPKWLTSLTNLRELRLVS 782 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~--~~lp~~~~~l~~L~~L~L~~ 782 (945)
..+.+++.|+.|++++|++.+. ...+ .|..+|+.|-+.|.+. ....+.+..++.++.|+++.
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~---------------I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSD---------------IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred HHHhcCccceEeeccCCcCCCc---------------cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 3455677777777777764321 1223 2456777777766553 22333444566667777766
Q ss_pred C
Q 002265 783 C 783 (945)
Q Consensus 783 ~ 783 (945)
|
T Consensus 156 N 156 (418)
T KOG2982|consen 156 N 156 (418)
T ss_pred c
Confidence 6
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.43 E-value=0.012 Score=66.95 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=76.6
Q ss_pred CceecchhHHHHHHHHHh---ccc--cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 181 GEVCGRVDEKNELLSKLC---ESS--EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~---~~~--~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
.++.|.+...+.+.+... ... .+-...+-|-++|++|+|||.+|+++.+......
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence 457787766655554221 100 0112346688999999999999999988754221
Q ss_pred ---------CceEEEEEcCccCCCc-------C-Chhh----HHhhccCCCCCcEEEEEcCchHHH-HHhc--CCCceee
Q 002265 236 ---------RKKIFLVLDDVWDGNC-------N-KWEP----FFRCLKNDLHGGKILVTTRNVSVA-RMMG--TTELDII 291 (945)
Q Consensus 236 ---------~~~~LlvlDdv~~~~~-------~-~~~~----l~~~~~~~~~gs~iiiTtr~~~~~-~~~~--~~~~~~~ 291 (945)
...++|++|+++.... . .-.. +...+.....+--||.||.+.... ..+- ..-+..+
T Consensus 308 ~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i 387 (489)
T CHL00195 308 RQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIF 387 (489)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEE
Confidence 5678999999964210 0 0011 111122223334466677654422 1111 1113478
Q ss_pred eCCCCChHHHHHHHHHHhcc
Q 002265 292 SIEQLAEEECWSLFERLVFF 311 (945)
Q Consensus 292 ~l~~l~~~~~~~lf~~~~~~ 311 (945)
.+...+.++-.++|..+...
T Consensus 388 ~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 388 FLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EeCCcCHHHHHHHHHHHHhh
Confidence 89999999999999887643
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.41 E-value=0.014 Score=72.05 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhcccccc---------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN--------------------- 234 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--------------------- 234 (945)
...++|.+..++.+...+..... ......++.++|+.|+|||++|+.+.......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHh
Confidence 35689999999999888865321 11224578899999999999999887532100
Q ss_pred ---------------------CCceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 235 ---------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 235 ---------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
.....+|+||++.....+.+..+...+..+. ..+-||+||..
T Consensus 644 ~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 644 IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 0122489999998877777777777775431 23447777765
No 209
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.029 Score=61.61 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccC------------------------------CceEEEEEcCccCCCcCCh
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------------RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------------~~~~LlvlDdv~~~~~~~~ 254 (945)
..+..+.+.|++|+|||+||..++....--+ ..--.||+||+... -+|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL--iD~ 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL--LDY 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh--hcc
Confidence 3567788999999999999998876533211 45568999999432 122
Q ss_pred h------------hHHhhccCCC-CCcE--EEEEcCchHHHHHhcCCC--ceeeeCCCCCh-HHHHHHHHHHhccCCCCc
Q 002265 255 E------------PFFRCLKNDL-HGGK--ILVTTRNVSVARMMGTTE--LDIISIEQLAE-EECWSLFERLVFFDRSSE 316 (945)
Q Consensus 255 ~------------~l~~~~~~~~-~gs~--iiiTtr~~~~~~~~~~~~--~~~~~l~~l~~-~~~~~lf~~~~~~~~~~~ 316 (945)
- .+...+.... +|-| |+-||....+...|+-.. ...|.+.-++. ++..+.++..- ..
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n-----~f 688 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN-----IF 688 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc-----CC
Confidence 2 2222232222 3334 555777788888876442 23688888887 77777776543 12
Q ss_pred chHHHHHHHHHHHHHc
Q 002265 317 DREKLESIGRKIARNC 332 (945)
Q Consensus 317 ~~~~~~~~~~~i~~~c 332 (945)
.+.....++.+...+|
T Consensus 689 sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 689 SDDEVRAIAEQLLSKK 704 (744)
T ss_pred CcchhHHHHHHHhccc
Confidence 2333455556666655
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.35 E-value=0.011 Score=60.95 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC---------------------------------CceEEEEEcCccCCCcCC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------RKKIFLVLDDVWDGNCNK 253 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------~~~~LlvlDdv~~~~~~~ 253 (945)
...+.++|.+|+|||+||.++++...... .+.=+||+||+.......
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~ 178 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESR 178 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCH
Confidence 45789999999999999998887643211 234478999997655455
Q ss_pred hhh--HHhhccCC-CCCcEEEEEcCc
Q 002265 254 WEP--FFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 254 ~~~--l~~~~~~~-~~gs~iiiTtr~ 276 (945)
|+. +...+... ...-.+||||..
T Consensus 179 ~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 179 YEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 654 22222211 123457777764
No 211
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.34 E-value=0.0038 Score=60.44 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=33.8
Q ss_pred eecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 183 VCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 183 ~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+||....+.++++.+..-.. .. .-|-|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~--~~-~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--SD-LPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--ST-S-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhC--CC-CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888888765432 22 456699999999999999999864
No 212
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0057 Score=62.78 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC
Q 002265 185 GRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD 248 (945)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~ 248 (945)
.|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+..........-+.+=+||...
T Consensus 2 ~~~~~~~~la~~~~~~~--~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 2 SRKQLIKELAEHILTLN--LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred cHHHHHHHHHHHHHHhC--CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 35666777777776422 246789999999999999999999987654322222233788753
No 213
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.33 E-value=0.0026 Score=58.26 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=26.1
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
+|+|.|++|+||||+|+.+.+.... ..+-+|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~-----~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF-----PVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----eEEEecce
Confidence 6899999999999999999886531 23566774
No 214
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0034 Score=58.02 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=23.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.-.|+|.||+|+||||+++.+.+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3468999999999999999999766544
No 215
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.30 E-value=0.0029 Score=68.24 Aligned_cols=39 Identities=28% Similarity=0.218 Sum_probs=29.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-CCce-EEEEEcC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-SRKK-IFLVLDD 245 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-~~~~-~LlvlDd 245 (945)
-+..+|+|++|+||||||+++|+..... ++-+ |+++.|+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE 209 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE 209 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 4578999999999999999999987764 2233 5555555
No 216
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.26 E-value=0.0041 Score=64.23 Aligned_cols=39 Identities=31% Similarity=0.196 Sum_probs=29.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-CC-ceEEEEEcC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-SR-KKIFLVLDD 245 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-~~-~~~LlvlDd 245 (945)
-+.++|+|++|+|||||++.+++..... ++ ..|+.++.+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e 56 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE 56 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC
Confidence 4689999999999999999999987654 22 234444555
No 217
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0049 Score=61.00 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=63.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC-----------------CCcCChhhHHhhccCCCCC
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD-----------------GNCNKWEPFFRCLKNDLHG 267 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~-----------------~~~~~~~~l~~~~~~~~~g 267 (945)
..+.+|||-|.+|+||||+|+.++...... +-.+|-+||.-. ...-+|+.+...+..-..|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 357899999999999999999999987754 566777887732 1123566666666554455
Q ss_pred cEEEEE-------cCchHHHHHhcCCCceeeeCC---CCChHHHHHHHHHHhccCC
Q 002265 268 GKILVT-------TRNVSVARMMGTTELDIISIE---QLAEEECWSLFERLVFFDR 313 (945)
Q Consensus 268 s~iiiT-------tr~~~~~~~~~~~~~~~~~l~---~l~~~~~~~lf~~~~~~~~ 313 (945)
..|-+- ||.... ....+..++-++ .|.+++..+++.-+.|-+.
T Consensus 84 ~~v~~P~yd~~~~~r~~~~---i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdt 136 (218)
T COG0572 84 KPVDLPVYDYKTHTREPET---IKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDT 136 (218)
T ss_pred CcccccccchhcccccCCc---cccCCCcEEEEecccccccHHHHhhcCEEEEEeC
Confidence 543321 222100 011111244433 4667777788877777444
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.17 E-value=0.045 Score=62.57 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=106.2
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------C----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN--------S---------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--------~---------------- 235 (945)
+..+-+|+.+..+|..++...-.....-..+-|.|.+|+|||..+..|.+..... +
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 3457799999999998886543322334589999999999999999988743210 0
Q ss_pred --------------------------------CceEEEEEcCccCCCcCChhhHHhhccCC-CCCcEEEEEcC--chH--
Q 002265 236 --------------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-LHGGKILVTTR--NVS-- 278 (945)
Q Consensus 236 --------------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~gs~iiiTtr--~~~-- 278 (945)
.+..++++|+++..--..-+.+...|.|. .++||++|-+- ..+
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 56778888988542212334455556554 47888666442 122
Q ss_pred -------HHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002265 279 -------VARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLL 346 (945)
Q Consensus 279 -------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 346 (945)
++..++. ..+...+.++++-.++...+..+. ........+-+|++|+.-.|-.-.|+.+.-++.
T Consensus 555 Er~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 2222232 367888999998888887766433 224445567777888877777777777665544
No 219
>PHA02244 ATPase-like protein
Probab=96.17 E-value=0.011 Score=63.47 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=43.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccC-------------------------------CceEEEEEcCccCCCcCChhhH
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------RKKIFLVLDDVWDGNCNKWEPF 257 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------~~~~LlvlDdv~~~~~~~~~~l 257 (945)
-|-|+|+.|+|||+||++++......+ .+--+++||++.....+....+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L 200 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIII 200 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHH
Confidence 477899999999999999886533111 2234889999975443333333
Q ss_pred HhhccC-----------CCCCcEEEEEcCc
Q 002265 258 FRCLKN-----------DLHGGKILVTTRN 276 (945)
Q Consensus 258 ~~~~~~-----------~~~gs~iiiTtr~ 276 (945)
...+.. .+++.++|+|+..
T Consensus 201 ~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 201 NSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 333321 1356788888875
No 220
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.16 E-value=0.14 Score=56.01 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=72.1
Q ss_pred ceEEEEEcCccCCCcC---ChhhH---HhhccCCCCCcEEEEEcCchHH----HHHhcCCCceeeeCCCCChHHHHHHHH
Q 002265 237 KKIFLVLDDVWDGNCN---KWEPF---FRCLKNDLHGGKILVTTRNVSV----ARMMGTTELDIISIEQLAEEECWSLFE 306 (945)
Q Consensus 237 ~~~LlvlDdv~~~~~~---~~~~l---~~~~~~~~~gs~iiiTtr~~~~----~~~~~~~~~~~~~l~~l~~~~~~~lf~ 306 (945)
++=+||+|+.-..... -|+.+ ...+ ...+-.+||++|-+... .+.+.......+.+...+.+-|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASL-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHH-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3668999998543211 11111 1111 12345688988877544 444544445678999999999999998
Q ss_pred HHhccCCCC------------cch----HHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHH
Q 002265 307 RLVFFDRSS------------EDR----EKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVE 353 (945)
Q Consensus 307 ~~~~~~~~~------------~~~----~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~ 353 (945)
.+....... ... .....-....+...||=-.-+..+++.++...+++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 887543110 000 12333455677888998889999999998876543
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.14 E-value=0.027 Score=68.71 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=78.0
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.+...+.+.+.+.-.-. +....+-+.++|++|+|||++|+++++.....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese 532 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE 532 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH
Confidence 4578888887777666532110 012244588999999999999999987654322
Q ss_pred ------------CceEEEEEcCccCCC------c-CC-----hhhHHhhccC--CCCCcEEEEEcCchHHHHHhcC---C
Q 002265 236 ------------RKKIFLVLDDVWDGN------C-NK-----WEPFFRCLKN--DLHGGKILVTTRNVSVARMMGT---T 286 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~------~-~~-----~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~~~~---~ 286 (945)
....+|++|++.... . .. ...+...+.. ...+--||.||...+.....-. .
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 445899999985310 0 01 1112222322 1234456667766554332211 1
Q ss_pred CceeeeCCCCChHHHHHHHHHHh
Q 002265 287 ELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
-+..+.+...+.++-.++|..+.
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHh
Confidence 23478899999999999997654
No 222
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.003 Score=63.38 Aligned_cols=85 Identities=27% Similarity=0.194 Sum_probs=51.2
Q ss_pred ccccCcccccccccc--ccc-ccChhhhcCCcccEEEecCCCC--ccccCcccccccCCCeeecCCCCCCccCc----cC
Q 002265 580 VRKLIHLKYLNLSEL--GIE-ILPETLCELYNLQKLDIRRCRN--LRELPAGIGKLMNMRSLLNGETYSLKYMP----IG 650 (945)
Q Consensus 580 i~~L~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~--l~~lP~~i~~L~~L~~L~l~~~~~l~~lp----~~ 650 (945)
+-.|++|++|.++.| .+. .++-..-++++|++|++++|+. +.++++ +.++.+|..|++.+|.... +- ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~-l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTN-LDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccc-cccHHHHH
Confidence 345778888888888 444 5555556668888888888762 123333 4567777777877774332 11 01
Q ss_pred CCCCCCCCcCCccccc
Q 002265 651 ISKLTSLRTLDRFVVG 666 (945)
Q Consensus 651 i~~L~~L~~L~~~~~~ 666 (945)
+.-+++|..|+.+.+.
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 3345566666655544
No 223
>PRK06921 hypothetical protein; Provisional
Probab=96.13 E-value=0.0056 Score=64.28 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..-+.++|..|+|||+||.++++...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 45789999999999999999887654
No 224
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.011 Score=69.70 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=67.2
Q ss_pred CCceecchhHHHHHHHHHhccccC----CCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQ----QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~----~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
...++|.+..++.+.+.+.....+ +....+.-..|+.|||||.||++++...-...
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 457999999999988877543211 23456777899999999999998776432110
Q ss_pred ---------------------CceE-EEEEcCccCCCcCChhhHHhhccCC----CC-------CcEEEEEcC
Q 002265 236 ---------------------RKKI-FLVLDDVWDGNCNKWEPFFRCLKND----LH-------GGKILVTTR 275 (945)
Q Consensus 236 ---------------------~~~~-LlvlDdv~~~~~~~~~~l~~~~~~~----~~-------gs~iiiTtr 275 (945)
.+.| +|.||.|...+++-++.+.+.|.++ +. .+-||.||.
T Consensus 570 IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 570 IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred hCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 3434 8889999888777777778777654 22 345667775
No 225
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.95 E-value=0.023 Score=61.76 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=34.1
Q ss_pred eecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 183 VCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 183 ~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~---~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP---LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777765432 2345899999999999999998754
No 226
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.92 E-value=0.014 Score=58.48 Aligned_cols=68 Identities=26% Similarity=0.304 Sum_probs=44.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC---------------------------------------------CceEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------------------RKKIFL 241 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------------------~~~~Ll 241 (945)
-+++.|.|.+|+||||+++.+........ .++-+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 35788999999999999988765443221 223589
Q ss_pred EEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc
Q 002265 242 VLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN 276 (945)
Q Consensus 242 vlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~ 276 (945)
|+|++...+...+..+...... .|+|+|+.--.
T Consensus 98 iVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 98 IVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp EESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred EEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 9999987655556666655544 47788876543
No 227
>PRK07667 uridine kinase; Provisional
Probab=95.90 E-value=0.013 Score=58.43 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=37.3
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.+.+.+.+.... +...+|||.|.+|+||||+|+.+.........+-.++=+||.
T Consensus 3 ~~~~~~~~~~~~---~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 3 TNELINIMKKHK---ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred HHHHHHHHHhcC---CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 345555555433 345899999999999999999998876543333345556664
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.88 E-value=0.018 Score=70.97 Aligned_cols=97 Identities=11% Similarity=0.191 Sum_probs=65.5
Q ss_pred CCceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhcccccc---C-----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN---S----------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~---~----------------- 235 (945)
...++|.+..++.+...+..... .+.....+-++|+.|+|||+||+.+.+..-.. .
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh
Confidence 46789999999998887753211 11224567799999999999998877542100 0
Q ss_pred ----------------------CceEEEEEcCccCCCcCChhhHHhhccCC-----------CCCcEEEEEcCc
Q 002265 236 ----------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-----------LHGGKILVTTRN 276 (945)
Q Consensus 236 ----------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iiiTtr~ 276 (945)
...-+++||++...+.+-+..+...+..+ -..+-||+||..
T Consensus 588 ~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 588 IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 22358999999887777777777776643 134557777764
No 229
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.87 E-value=0.036 Score=60.39 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=37.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~---~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP---LDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3589999999999888865432 2346889999999999999998754
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.83 E-value=0.0084 Score=64.70 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=44.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC---------------------------------CceEEEEEcCccCCCcCCh
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------~~~~LlvlDdv~~~~~~~~ 254 (945)
.-+.++|..|+|||+||.++++...... ..-=||||||+.......|
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 5699999999999999998877542211 1224899999966543444
Q ss_pred hh--HHhhccCC-CCCcEEEEEcCc
Q 002265 255 EP--FFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 255 ~~--l~~~~~~~-~~gs~iiiTtr~ 276 (945)
.. +...+... ..+..+||||..
T Consensus 264 ~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 264 SKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCC
Confidence 32 33333221 234568888874
No 231
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.82 E-value=0.083 Score=53.19 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=83.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------------------------------C
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------------------------R 236 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------------------------~ 236 (945)
+..++.++|.-|.|||.+++++........ +
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 456899999999999999994432221111 6
Q ss_pred ce-EEEEEcCccCCCcCChhhHHhhccCCCCCc---EEEEEcCch-------HHHHHhcCCCcee-eeCCCCChHHHHHH
Q 002265 237 KK-IFLVLDDVWDGNCNKWEPFFRCLKNDLHGG---KILVTTRNV-------SVARMMGTTELDI-ISIEQLAEEECWSL 304 (945)
Q Consensus 237 ~~-~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs---~iiiTtr~~-------~~~~~~~~~~~~~-~~l~~l~~~~~~~l 304 (945)
++ +.+++|+..+...+..+.+.-...-...++ +|+..-..+ .+....+.. ..+ |++.|++.++...+
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R-~~ir~~l~P~~~~~t~~y 208 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR-IDIRIELPPLTEAETGLY 208 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe-EEEEEecCCcChHHHHHH
Confidence 66 888999987765555555544332211122 233332211 122222222 124 99999999999988
Q ss_pred HHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHH
Q 002265 305 FERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIG 343 (945)
Q Consensus 305 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 343 (945)
+.++..+...+ ++--..+....|.....|.|.+|..++
T Consensus 209 l~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 209 LRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHH
Confidence 88877554322 111124456678889999999998765
No 232
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.072 Score=57.74 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred ceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCC
Q 002265 237 KKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSS 315 (945)
Q Consensus 237 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~ 315 (945)
++-++|+|++...+...+..+...+..-.+++.+|++|.+ ..+...+.+. ...+.+.+++.++..+.+.... .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR-cq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR-CRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc-CEEEEecCCCHHHHHHHHHHcC---C--
Confidence 3446677888777666777777777766677766665555 4444333322 3489999999999998887641 1
Q ss_pred cchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 316 EDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 316 ~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
.. ...++..++|-|.....+
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 123567789999755433
No 233
>PRK08118 topology modulation protein; Reviewed
Probab=95.81 E-value=0.0058 Score=59.34 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
+.|.|+|++|+||||||+.+++....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999987654
No 234
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.76 E-value=0.29 Score=52.29 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=30.2
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.++=..+....+...+.. -+.|.|.|..|+||||+|++++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~-------~~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY-------DRRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhc-------CCcEEEEeCCCChHHHHHHHHHHH
Confidence 344444455667777643 235999999999999999998764
No 235
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.065 Score=60.91 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=79.3
Q ss_pred CCceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
-.++-|.++-..+|.+.+.-... +-...+-|-.+|++|.|||++|+++++.....+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeS 512 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGES 512 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCch
Confidence 34566677666555544322111 013467789999999999999999999876554
Q ss_pred -------------CceEEEEEcCccCCCcC-------ChhhHHh----hccCCCCCcEE--EEEcCchHHHHH-hcC--C
Q 002265 236 -------------RKKIFLVLDDVWDGNCN-------KWEPFFR----CLKNDLHGGKI--LVTTRNVSVARM-MGT--T 286 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~~~-------~~~~l~~----~~~~~~~gs~i--iiTtr~~~~~~~-~~~--~ 286 (945)
--..+|+||.++..... .-+.+.. .+........| |-.|..++.... +-. .
T Consensus 513 Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 513 ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcc
Confidence 33589999988542100 0111222 22222222233 333333333222 111 1
Q ss_pred CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 002265 287 ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGR 326 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 326 (945)
-+..+.+..-+.+--.++|+.++-.-. ..+.-++.++++
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp-~~~~vdl~~La~ 631 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMP-FSEDVDLEELAQ 631 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCC-CCccccHHHHHH
Confidence 134777877777888889988874322 122234455443
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.73 E-value=0.025 Score=61.12 Aligned_cols=68 Identities=9% Similarity=0.116 Sum_probs=42.8
Q ss_pred EEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHHHHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
++|+|++...+......+...+.....+..+|++|.+.. +...+... ...+.+.+++.+++.+.+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR-c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR-CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH-hhhhcCCCCCHHHHHHHHHhc
Confidence 445577766554455556666654445566777777644 44332222 347999999999998888653
No 237
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.71 E-value=0.055 Score=66.10 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=83.7
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.+..++++.+.+...-. +-...+-|.++|++|+|||+||+++++.....+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~ 257 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESE 257 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHH
Confidence 4588999999888877642110 012245688999999999999999987643211
Q ss_pred ------------CceEEEEEcCccCCCc------CC-----hhhHHhhccCC-CCCcEEEE-EcCchH-HHHHhcC--CC
Q 002265 236 ------------RKKIFLVLDDVWDGNC------NK-----WEPFFRCLKND-LHGGKILV-TTRNVS-VARMMGT--TE 287 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~------~~-----~~~l~~~~~~~-~~gs~iii-Ttr~~~-~~~~~~~--~~ 287 (945)
....+|++|++..... .. ...+...+... ..+..++| ||.... +...+.. .-
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRf 337 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRF 337 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhc
Confidence 3446899999854210 01 11232222221 12333444 554432 2111111 11
Q ss_pred ceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 288 LDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
...+.+...+.++-.+++..+.-.. ..... .....+++.+.|.-
T Consensus 338 d~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 338 DREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred cEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCC
Confidence 2367888888888888887544211 11111 12455777777754
No 238
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.71 E-value=0.0034 Score=62.84 Aligned_cols=198 Identities=19% Similarity=0.168 Sum_probs=112.1
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccc----cccC-------hhhhcCCcccEEE
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGI----EILP-------ETLCELYNLQKLD 613 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i----~~lp-------~~i~~L~~L~~L~ 613 (945)
+..+..+..+++|+|.+. -.....|...|.+-.+|+..+++.-.. ..+| +.+-+|++|++.+
T Consensus 26 l~~~d~~~evdLSGNtig-------tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG-------TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHhhcceeEEeccCCccc-------HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 445788889994444321 111234556677778888888876331 1333 3456788999999
Q ss_pred ecCCCCccccCcc----cccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccc-cccccCCCCCe
Q 002265 614 IRRCRNLRELPAG----IGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRL-ESLKNLQLRGK 688 (945)
Q Consensus 614 L~~~~~l~~lP~~----i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l-~~L~~L~L~~~ 688 (945)
||.|..-.+.|+. |.+-+.|.||.+++| .+..+. +.++ ..|.+|-
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a-------------------------G~rigkal~~la---- 148 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIA-------------------------GGRIGKALFHLA---- 148 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccc-------------------------hhHHHHHHHHHH----
Confidence 9988765666654 456677888888777 222111 0000 0111111
Q ss_pred EEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcc
Q 002265 689 CSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKW 768 (945)
Q Consensus 689 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~ 768 (945)
........+.|+......|.+..++ .......+..+.+|+.+.+..|++. |..
T Consensus 149 ---------------~nKKaa~kp~Le~vicgrNRlengs----------~~~~a~~l~sh~~lk~vki~qNgIr--peg 201 (388)
T COG5238 149 ---------------YNKKAADKPKLEVVICGRNRLENGS----------KELSAALLESHENLKEVKIQQNGIR--PEG 201 (388)
T ss_pred ---------------HHhhhccCCCceEEEeccchhccCc----------HHHHHHHHHhhcCceeEEeeecCcC--cch
Confidence 0112344566777776666643221 2223344566678888888877652 442
Q ss_pred c--------ccccCCcEEEEecCCCCCcCC-----CCCccc-cceEeecccc
Q 002265 769 L--------TSLTNLRELRLVSCVDCEHLP-----PLGKLA-LEKLELGNLK 806 (945)
Q Consensus 769 ~--------~~l~~L~~L~L~~~~~~~~l~-----~l~~l~-L~~L~l~~~~ 806 (945)
+ ..+.+|+.|+|.+|.....-+ .+..-+ |+.|.+..|-
T Consensus 202 v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 202 VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 2 267889999998885432111 022234 7888888774
No 239
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.68 E-value=0.016 Score=59.73 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEE-EEEcCc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIF-LVLDDV 246 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~L-lvlDdv 246 (945)
....++||.|..|.|||||++.+........+.-.+ +-+||.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 467899999999999999999999887766554444 667775
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.008 Score=62.58 Aligned_cols=49 Identities=29% Similarity=0.259 Sum_probs=36.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC--------------------------------CceEEEEEcCccCCCcCCh
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------------------RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------------------~~~~LlvlDdv~~~~~~~~ 254 (945)
..-+.++|.+|+|||.||.++.+...... .+-=||||||+.......|
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQE 184 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCHH
Confidence 44689999999999999999888765221 2334899999977655555
Q ss_pred h
Q 002265 255 E 255 (945)
Q Consensus 255 ~ 255 (945)
.
T Consensus 185 ~ 185 (254)
T COG1484 185 E 185 (254)
T ss_pred H
Confidence 4
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=95.64 E-value=0.068 Score=64.48 Aligned_cols=119 Identities=11% Similarity=-0.033 Sum_probs=81.0
Q ss_pred cCCCcHHHHHHHHhccccc-----cC-----------------------------CceEEEEEcCccCCCcCChhhHHhh
Q 002265 215 LGGIGKTTLAQLAYNNDEV-----NS-----------------------------RKKIFLVLDDVWDGNCNKWEPFFRC 260 (945)
Q Consensus 215 ~gGiGKTtLa~~~~~~~~~-----~~-----------------------------~~~~LlvlDdv~~~~~~~~~~l~~~ 260 (945)
+-++||||+|.++++..-. .. .+.-++|+|+++..+.+....+...
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~ 653 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 653 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHH
Confidence 7889999999999887411 00 1347999999988776677777777
Q ss_pred ccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 261 LKNDLHGGKILVTTRNV-SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 261 ~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
+.......++|++|.+. .+....... ...+.+.+++.++-.+.+.+.+-...-..+ .+....|++.++|-+-.
T Consensus 654 lEep~~~~~FILi~N~~~kIi~tIrSR-C~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 654 MEMFSSNVRFILSCNYSSKIIEPIQSR-CAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRR 727 (846)
T ss_pred hhCCCCCeEEEEEeCChhhCchHHhhh-ceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 77655667777666553 343333322 458999999999988887766532211111 33567899999997743
No 242
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.61 E-value=0.011 Score=59.14 Aligned_cols=38 Identities=37% Similarity=0.438 Sum_probs=28.3
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCc----eEEEEEcCc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRK----KIFLVLDDV 246 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~----~~LlvlDdv 246 (945)
||||.|.+|+||||+|+.+.......... -.++.+|+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 79999999999999999998877644322 344445554
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.61 E-value=0.031 Score=58.78 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=28.5
Q ss_pred ecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHH
Q 002265 184 CGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQL 226 (945)
Q Consensus 184 vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~ 226 (945)
-+|..+..-.++.|.. +++..|.+.|.+|.|||-||-+
T Consensus 227 ~prn~eQ~~ALdlLld-----~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 227 RPRNAEQRVALDLLLD-----DDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred CcccHHHHHHHHHhcC-----CCCCeEEeeccCCccHhHHHHH
Confidence 3455555555666764 3688999999999999999944
No 244
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.0072 Score=60.72 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=55.6
Q ss_pred ccCcccccccccccccccChhhhcCCcccEEEecCC--CCccccCcccccccCCCeeecCCCCCCccC--ccCCCCCCCC
Q 002265 582 KLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRC--RNLRELPAGIGKLMNMRSLLNGETYSLKYM--PIGISKLTSL 657 (945)
Q Consensus 582 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L 657 (945)
.+..|++|++.++.++.+ ..+-.|++|+.|+++.| +....++.-+.++++|++|++++|. ++.+ -..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence 445566666666655433 12335889999999998 5456666667788999999999983 3321 1235566667
Q ss_pred CcCCcccccC
Q 002265 658 RTLDRFVVGG 667 (945)
Q Consensus 658 ~~L~~~~~~~ 667 (945)
.+|+++.|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 7777766653
No 245
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.56 E-value=0.051 Score=63.84 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
....++|....+.++.+.+..-.. .-..|-|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR---SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCccHHHHHHHHHHh
Confidence 446799999999999888865432 2345789999999999999999865
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.02 Score=64.03 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCceecchhHHHHHHHHHhccccC-------CCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQ-------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
-.++-|.++.+.++.+++..-... -...+=|-++|++|.|||.||++++++..+-+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH
Confidence 356889999999888877542111 12345688999999999999999999876654
Q ss_pred ------------CceEEEEEcCccC
Q 002265 236 ------------RKKIFLVLDDVWD 248 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~ 248 (945)
.-.+++++|+++.
T Consensus 269 kkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 269 KKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred HHHHHHHHHHhccCCeEEEeecccc
Confidence 5688999999965
No 247
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.50 E-value=0.013 Score=62.48 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
...+.++|||++|.|||.+|+++++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 457899999999999999999999876543
No 248
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.047 Score=61.17 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=77.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------CceEEEEEcCccCCC-----cC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------------RKKIFLVLDDVWDGN-----CN 252 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------------~~~~LlvlDdv~~~~-----~~ 252 (945)
..=|.+||++|.|||-||++|+|.....| .-.+.|+||.++... ..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 34577899999999999999999877665 678999999995411 11
Q ss_pred Ch------hhHHhhccCC--CCCcEEEEEcCchHHHHHhcCCC---ceeeeCCCCChHHHHHHHHHHhccCCCC-cchHH
Q 002265 253 KW------EPFFRCLKND--LHGGKILVTTRNVSVARMMGTTE---LDIISIEQLAEEECWSLFERLVFFDRSS-EDREK 320 (945)
Q Consensus 253 ~~------~~l~~~~~~~--~~gs~iiiTtr~~~~~~~~~~~~---~~~~~l~~l~~~~~~~lf~~~~~~~~~~-~~~~~ 320 (945)
.| .++...+... ..|--||-.|...++....-..+ +...-+..-+.+|-.++++...-....+ ..+-+
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd 704 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD 704 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence 12 2233233222 34556777776666544321111 2367788888899889888766321111 22334
Q ss_pred HHHHHHHHHHHcCCC
Q 002265 321 LESIGRKIARNCKGL 335 (945)
Q Consensus 321 ~~~~~~~i~~~c~gl 335 (945)
+.++|+. .+|.|.
T Consensus 705 l~eia~~--~~c~gf 717 (802)
T KOG0733|consen 705 LDEIARN--TKCEGF 717 (802)
T ss_pred HHHHhhc--ccccCC
Confidence 5555543 345554
No 249
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.045 Score=59.98 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=76.1
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc------------------------ccC--
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE------------------------VNS-- 235 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~------------------------~~~-- 235 (945)
+++|-+....++..+..... .....+-++|+.|+||||+|..+.+... ...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 46777788888888887432 2344699999999999999988775432 000
Q ss_pred -----------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcC
Q 002265 236 -----------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGT 285 (945)
Q Consensus 236 -----------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~ 285 (945)
++.-++++|+++....+.-..+...+......+.+|++|.. ..+...+..
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S 158 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS 158 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh
Confidence 46778899999876655555566666666677888888874 333333332
Q ss_pred CCceeeeCCCCChHH
Q 002265 286 TELDIISIEQLAEEE 300 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~ 300 (945)
. ...+++.+.+..+
T Consensus 159 R-c~~i~f~~~~~~~ 172 (325)
T COG0470 159 R-CQRIRFKPPSRLE 172 (325)
T ss_pred c-ceeeecCCchHHH
Confidence 2 3467777644433
No 250
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.43 E-value=0.078 Score=60.91 Aligned_cols=49 Identities=24% Similarity=0.235 Sum_probs=37.4
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
+++--.+-++++..||.....+....+++.+.|++|+||||.++.+++.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 4555566788888888754333334679999999999999999988765
No 251
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.41 E-value=0.012 Score=59.01 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=37.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.....|.++||+|.||||..+.++.+...++...|.|=||-.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA 58 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA 58 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence 456688899999999999999999999998888999999944
No 252
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0051 Score=36.79 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=7.7
Q ss_pred ccccccccccccccChhh
Q 002265 586 LKYLNLSELGIEILPETL 603 (945)
Q Consensus 586 L~~L~L~~~~i~~lp~~i 603 (945)
|++|+|++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 344444444444444433
No 253
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.39 E-value=0.0019 Score=75.30 Aligned_cols=34 Identities=32% Similarity=0.253 Sum_probs=20.5
Q ss_pred cCccccccccccc-ccc--cChhhhcCCcccEEEecC
Q 002265 583 LIHLKYLNLSELG-IEI--LPETLCELYNLQKLDIRR 616 (945)
Q Consensus 583 L~~L~~L~L~~~~-i~~--lp~~i~~L~~L~~L~L~~ 616 (945)
.+.|+.|.+..+. +.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 5666666666653 332 334456667777777766
No 254
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.11 Score=60.95 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=92.5
Q ss_pred CceecchhHHHH---HHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNE---LLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~---l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.++.|-++..++ ++++|..+.. +-.-.+=+-++|++|+|||-||++++-...+-+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~as 390 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGAS 390 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchH
Confidence 467888765555 4555543221 012245688999999999999999998876654
Q ss_pred -----------CceEEEEEcCccCCCc---------------CChhhHHhhccCCCCCc--EEEEEcCchHHHHHhcCC-
Q 002265 236 -----------RKKIFLVLDDVWDGNC---------------NKWEPFFRCLKNDLHGG--KILVTTRNVSVARMMGTT- 286 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~---------------~~~~~l~~~~~~~~~gs--~iiiTtr~~~~~~~~~~~- 286 (945)
....+|.+|+++.... ..+.++.........++ -++-+|+..++....-..
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrp 470 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRP 470 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCC
Confidence 5567889998854210 11222222222222222 334456555554332111
Q ss_pred --CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhH
Q 002265 287 --ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLA 338 (945)
Q Consensus 287 --~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 338 (945)
-++.+.++.-+..+..++|.-++-.-.- ..+...+++ |+..--|.+=|
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 1457888899999999999988743222 234455566 77777777744
No 255
>PRK07261 topology modulation protein; Provisional
Probab=95.34 E-value=0.011 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 256
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.043 Score=54.80 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++-|=.+.++++.+.....-- +-+..+-|..+|++|.|||-+|++|+|+....+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgega 256 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA 256 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhH
Confidence 4566667777777766532110 113345688999999999999999999876544
Q ss_pred ------------CceEEEEEcCcc
Q 002265 236 ------------RKKIFLVLDDVW 247 (945)
Q Consensus 236 ------------~~~~LlvlDdv~ 247 (945)
.|-++|++|.++
T Consensus 257 rmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccc
Confidence 678899999884
No 257
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.30 E-value=0.014 Score=62.14 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-|||||||+|..+........++|+|+|
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 58888899999999999988887765557888776
No 258
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.21 E-value=0.015 Score=59.30 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=27.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-||+||||++..+...... .++|+|+|
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~-~G~rvLli 34 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE-MGKKVLQV 34 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH-CCCcEEEE
Confidence 47899999999999999887776664 46777666
No 259
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.20 E-value=0.021 Score=58.10 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.-.++|+|..|+|||||+..+....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999998776543
No 260
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.19 E-value=0.013 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHhccc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~ 231 (945)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 261
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.039 Score=60.70 Aligned_cols=68 Identities=26% Similarity=0.296 Sum_probs=50.3
Q ss_pred Cceecchh---HHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVD---EKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~---~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.++-|-|+ |+++|+++|..... ++.=.+=|.++|++|.|||-||++++-...+-|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGAr 383 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGAR 383 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHH
Confidence 45667765 66777888865321 122356688999999999999999998876654
Q ss_pred -----------CceEEEEEcCccC
Q 002265 236 -----------RKKIFLVLDDVWD 248 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~ 248 (945)
.-.+.|++|.++.
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhh
Confidence 5678999998854
No 262
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.057 Score=58.64 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=35.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccCCCcCChhhHHh
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWDGNCNKWEPFFR 259 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~~~~~~~~~l~~ 259 (945)
..++|+++|++|+||||++..++.... ..++++.+|-=|-.. ...|+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~R--iaAvEQLk~ 290 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSR--IGTVQQLQD 290 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcc--hHHHHHHHH
Confidence 457999999999999999999987665 335667655444432 134555544
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.14 E-value=0.016 Score=65.55 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=40.8
Q ss_pred ceecchhHHHHHHHHHhcccc-CCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 182 EVCGRVDEKNELLSKLCESSE-QQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~-~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+++|.++.++++++.|..... .+..-+++.++|+.|+||||||+.+.+..+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 689999999999999843221 123457999999999999999999988544
No 264
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.10 E-value=0.02 Score=61.46 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++.+++++.|=|||||||+|..+....... ++|+|+|
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~-G~rVLli 40 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEM-GQRILIV 40 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHC-CCcEEEE
Confidence 467999999999999999998877776653 7888887
No 265
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.08 E-value=0.02 Score=61.20 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=28.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+|-|||||||+|..+..... +.++|+|+|
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La-~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALA-ESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-hCCCEEEEE
Confidence 5788999999999999988877765 347787776
No 266
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.07 E-value=0.021 Score=56.94 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=29.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
+++.++|+.|+||||.+.+++.....+..+-.|+-.|..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 689999999999999998888877766334445555554
No 267
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.0014 Score=65.63 Aligned_cols=92 Identities=23% Similarity=0.199 Sum_probs=61.0
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc--ccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA--GIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~ 645 (945)
.-+|.+..| .-+.+++.|++|.|+-|.|+.| +.+..|++|+.|.|+.|. +..+-+ .+.+|++|+.|.|..|.-..
T Consensus 26 cwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 26 CWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred ccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCccc
Confidence 555555554 3356788889999998888887 347888889999888876 554443 34678888888777664332
Q ss_pred cCcc-----CCCCCCCCCcCCc
Q 002265 646 YMPI-----GISKLTSLRTLDR 662 (945)
Q Consensus 646 ~lp~-----~i~~L~~L~~L~~ 662 (945)
.-+. .+.-|++|+.|+-
T Consensus 103 ~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 103 EAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccchhHHHHHHHHcccchhccC
Confidence 2221 1445666776663
No 268
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.04 E-value=0.017 Score=61.63 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=27.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+.|+|+|-|||||||+|..+....... ++|+|+|
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~-G~~Vlli 34 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM-GKKVMIV 34 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEE
Confidence 468999999999999998888777644 5777776
No 269
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.03 E-value=0.023 Score=56.30 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLD 244 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlD 244 (945)
.|+|+|-||+||||+|..+......+.+.++| |+|
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VL-vVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVL-VVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEE-EEe
Confidence 58999999999999999976666655555555 445
No 270
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.03 E-value=0.015 Score=56.05 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=41.1
Q ss_pred CcccccccccccccccChhhhcCCcccEEEecCCCCccccCccccc-ccCCCeeecCCC
Q 002265 584 IHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGK-LMNMRSLLNGET 641 (945)
Q Consensus 584 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~-L~~L~~L~l~~~ 641 (945)
.+...+||++|.+..++ .+..+..|.+|.|.+|. +..+-+.+.. +++|..|.+.+|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCc
Confidence 35677888888877664 36678888888888887 6666555654 667888888877
No 271
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.068 Score=56.86 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=62.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------CceEEEEEcCccC-------
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------------RKKIFLVLDDVWD------- 248 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------------~~~~LlvlDdv~~------- 248 (945)
...+-|-.+|++|.|||..|+.+..+....+ .+-.|+++|..+-
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 4578899999999999999999988755443 6677888887732
Q ss_pred --CCcCChhhHHhhccCCCCCcE----EEEEcCchHHHHHhcCCCceeeeCCCCChHHHHHHHHHH
Q 002265 249 --GNCNKWEPFFRCLKNDLHGGK----ILVTTRNVSVARMMGTTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 249 --~~~~~~~~l~~~~~~~~~gs~----iiiTtr~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
.+.++-..+...+-..+..|+ |+.|.|..+.-..+...-+.+++..-..++|-.+|+..+
T Consensus 462 tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lY 527 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLY 527 (630)
T ss_pred hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHH
Confidence 111222234444444444453 333455444333222222336666666677777766543
No 272
>PTZ00301 uridine kinase; Provisional
Probab=94.97 E-value=0.023 Score=57.19 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=28.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC-CceE-EEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS-RKKI-FLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-~~~~-LlvlDdv 246 (945)
..+|||.|.+|+||||||+.+.+...... ...+ ++-.|+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 46899999999999999998877654322 2233 4445554
No 273
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.94 E-value=0.2 Score=58.10 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=36.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++|....+.++.+.+..-.. .-..|.|.|.+|+|||++|+.++...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~---~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR---SSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc---cCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 3589998888888777754321 33468899999999999999988753
No 274
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.94 E-value=0.02 Score=55.71 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=41.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc-cC----------------------------------CceEEEEEcCccCCCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEV-NS----------------------------------RKKIFLVLDDVWDGNC 251 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~-~~----------------------------------~~~~LlvlDdv~~~~~ 251 (945)
..++-+.|+.|+|||.||+++...... .. ...-+|+||++.....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 457889999999999999887766552 11 2233999999988765
Q ss_pred -----------CChhhHHhhccC
Q 002265 252 -----------NKWEPFFRCLKN 263 (945)
Q Consensus 252 -----------~~~~~l~~~~~~ 263 (945)
.-|..+...+..
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHhcc
Confidence 556777766643
No 275
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.94 E-value=0.022 Score=59.13 Aligned_cols=28 Identities=36% Similarity=0.299 Sum_probs=24.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
-+.++|+|.+|+||||||+.+++....+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~ 96 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc
Confidence 3579999999999999999999876644
No 276
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.097 Score=61.89 Aligned_cols=120 Identities=17% Similarity=0.175 Sum_probs=74.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
..++||++++.++++.|..... ++ -.++|.+|||||++|.-++.+.....
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K--NN---PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyR 244 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK--NN---PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYR 244 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC--CC---CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccccc
Confidence 3489999999999999987543 22 23679999999999877666543221
Q ss_pred ----------------CceEEEEEcCccCCC---------cCChhhHHhhccCCCCCcEEEEEcCchHH---HHH--hcC
Q 002265 236 ----------------RKKIFLVLDDVWDGN---------CNKWEPFFRCLKNDLHGGKILVTTRNVSV---ARM--MGT 285 (945)
Q Consensus 236 ----------------~~~~LlvlDdv~~~~---------~~~~~~l~~~~~~~~~gs~iiiTtr~~~~---~~~--~~~ 285 (945)
.+++.+++|.+.... .+.-.-+.+.+.. +.--.|=.||-++.- -+. +..
T Consensus 245 GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~iEKD~AL~R 323 (786)
T COG0542 245 GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKYIEKDAALER 323 (786)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHHhhhchHHHh
Confidence 348999999885411 1111122333322 222345566654321 100 111
Q ss_pred CCceeeeCCCCChHHHHHHHHH
Q 002265 286 TELDIISIEQLAEEECWSLFER 307 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~ 307 (945)
..+.+.+...+.+++..+++-
T Consensus 324 -RFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 324 -RFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred -cCceeeCCCCCHHHHHHHHHH
Confidence 124789999999999998864
No 277
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.88 E-value=0.41 Score=51.29 Aligned_cols=90 Identities=21% Similarity=0.219 Sum_probs=53.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC-CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-----hHHHH
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS-RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-----VSVAR 281 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~-~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-----~~~~~ 281 (945)
..+.|.|..|+||||+++++.+...... +.| .++++|..+... ..+....+.+... ..+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~r-i~tiEd~~El~~------------~~~~~v~~~~~~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDR-VVIIEDTRELQC------------AAPNVVQLRTSDDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCce-EEEECCchhhcC------------CCCCEEEEEecCCCCCHHHHHHH
Confidence 3577999999999999999997765432 344 467777643211 0112112222211 22222
Q ss_pred HhcCCCceeeeCCCCChHHHHHHHHHHhcc
Q 002265 282 MMGTTELDIISIEQLAEEECWSLFERLVFF 311 (945)
Q Consensus 282 ~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~ 311 (945)
.+... ...+-+.++...|++++|.....+
T Consensus 200 aLR~~-pD~iivGEiR~~ea~~~l~a~~tG 228 (299)
T TIGR02782 200 TLRLR-PDRIIVGEVRGGEALDLLKAWNTG 228 (299)
T ss_pred HhcCC-CCEEEEeccCCHHHHHHHHHHHcC
Confidence 33333 346778888889999988665443
No 278
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.061 Score=53.31 Aligned_cols=55 Identities=22% Similarity=0.159 Sum_probs=38.1
Q ss_pred CceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 181 GEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
.++-|.+-..+++.+...-.- -+-+..+-|.++|++|.|||.||++|+++....+
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 456677776666665542110 0123456788999999999999999999876544
No 279
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.025 Score=58.29 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
-|+|-++|++|.|||+|.+++++....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRT 205 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeee
Confidence 37889999999999999999999876553
No 280
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.83 E-value=0.026 Score=61.47 Aligned_cols=39 Identities=26% Similarity=0.153 Sum_probs=29.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-C-CceEEEEEcC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-S-RKKIFLVLDD 245 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-~-~~~~LlvlDd 245 (945)
-+.++|+|++|+|||||++.+++..... + ...|+++.|+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE 208 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE 208 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC
Confidence 3579999999999999999999987655 2 2345566655
No 281
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.78 E-value=0.022 Score=56.08 Aligned_cols=39 Identities=36% Similarity=0.519 Sum_probs=30.2
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
+|+|.|..|+||||||+.+.........+-..|=+||..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 589999999999999999998766443344555677774
No 282
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.77 E-value=0.066 Score=56.41 Aligned_cols=59 Identities=31% Similarity=0.347 Sum_probs=39.2
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------------------
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------- 235 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------- 235 (945)
...+++.+... -+-+-++|+.|+|||++++..........
T Consensus 22 ~~~ll~~l~~~------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~g 95 (272)
T PF12775_consen 22 YSYLLDLLLSN------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYG 95 (272)
T ss_dssp HHHHHHHHHHC------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEE
T ss_pred HHHHHHHHHHc------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCC
Confidence 34556666542 24679999999999999998775432111
Q ss_pred ---CceEEEEEcCccCCCcCCh
Q 002265 236 ---RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 236 ---~~~~LlvlDdv~~~~~~~~ 254 (945)
+|+.++++||+.-...+.|
T Consensus 96 P~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 96 PPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EESSSEEEEEEETTT-S---TT
T ss_pred CCCCcEEEEEecccCCCCCCCC
Confidence 7899999999965443333
No 283
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.75 E-value=0.058 Score=59.41 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|+|+.|.||||||+.+.--
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcc
Confidence 47999999999999999987654
No 284
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.74 E-value=0.025 Score=57.64 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=27.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccccc--cCCceEEEEEcCc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEV--NSRKKIFLVLDDV 246 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~--~~~~~~LlvlDdv 246 (945)
+|||.|..|+||||+|+.+...... ...+-.+|-+||.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5899999999999999999887653 1122334445665
No 285
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.72 E-value=0.29 Score=45.81 Aligned_cols=84 Identities=10% Similarity=0.145 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhcCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhhHHHH
Q 002265 2 AHAIVSFLLDQLKSIPQDQVKEKWRLVTGVEQEVEKLTKNLRAIQAVLEDAEQRQMKQDKVVTLWLDQLRDASYDMEDVL 81 (945)
Q Consensus 2 a~~~v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~l 81 (945)
|+.+.+++++.+.+.+-+.+.+........+.-.++|..+++.|.-.+++.+.-+...+..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44444444444444344488888888888899999999999999999999887433323232445788888899999998
Q ss_pred HHHH
Q 002265 82 DEWI 85 (945)
Q Consensus 82 d~~~ 85 (945)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8763
No 286
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.72 E-value=0.048 Score=52.82 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHhcccc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
|.|.|..|+|||||++.++...+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999887653
No 287
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.70 E-value=0.021 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 288
>PRK13695 putative NTPase; Provisional
Probab=94.69 E-value=0.079 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986544
No 289
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=1 Score=46.28 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=47.7
Q ss_pred CceecchhHHHHHHHHHhccc-------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.++-|.+...+.+.+...-.- +.....+-|.++|++|.||+-||++|+.....-+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 356677777766665432111 0112367899999999999999999987654322
Q ss_pred -----------CceEEEEEcCccC
Q 002265 236 -----------RKKIFLVLDDVWD 248 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~ 248 (945)
++.-+|++|.|+.
T Consensus 213 LVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhh
Confidence 7888999999953
No 290
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.67 E-value=0.026 Score=57.30 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|+|.|.+|+||||||+.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998865
No 291
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.66 E-value=0.029 Score=54.15 Aligned_cols=72 Identities=25% Similarity=0.247 Sum_probs=33.2
Q ss_pred cCCCcccccCccccc-cCcccccccccccccccC--hhhhcCCcccEEEecCCCCccccCc----ccccccCCCeeecCC
Q 002265 568 LDPNSIREIPKNVRK-LIHLKYLNLSELGIEILP--ETLCELYNLQKLDIRRCRNLRELPA----GIGKLMNMRSLLNGE 640 (945)
Q Consensus 568 l~~~~l~~lp~~i~~-L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~----~i~~L~~L~~L~l~~ 640 (945)
+.+|.|..|-..+.. +++|..|.|.+|+|..+- .-+..+++|++|.+-+|. +..-+. .+.++++|+.||..+
T Consensus 71 l~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 71 LNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 444444444333332 233555555555544321 123344555555555544 322222 245566666666554
No 292
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.63 E-value=0.028 Score=56.92 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...+|+|.|++|+||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999987644
No 293
>PRK08233 hypothetical protein; Provisional
Probab=94.61 E-value=0.026 Score=55.86 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=28.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
..+|+|.|.+|+||||+|+.+...... ..++.+|+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~----~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN----SKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC----CceEEECCE
Confidence 468999999999999999999886532 244556665
No 294
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.59 E-value=0.055 Score=65.60 Aligned_cols=93 Identities=23% Similarity=0.295 Sum_probs=63.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------C---
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------R--- 236 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~--- 236 (945)
..++|+...+..+.+.+..-.. .-.-|-|+|..|+|||++|+.+++...... +
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~---~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~ 452 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ---SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 452 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC---CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccc
Confidence 4699999999888777764332 334689999999999999999986432110 0
Q ss_pred -----------------ceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 237 -----------------KKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 237 -----------------~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
..=.|+||+|.....+....+...+.... .+.|||.||..
T Consensus 453 ~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 453 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred ccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11248999998765555556666554321 24588888754
No 295
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.54 E-value=0.027 Score=59.96 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=28.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+|-|||||||+|..+...... .++|+|+|
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~-~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST-MGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh-hCCCeEEE
Confidence 47888899999999999888776653 47888887
No 296
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.53 E-value=0.03 Score=59.38 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.3
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+|++.|-||+||||+|..+...... .++|+|+|
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~-~g~rVLli 34 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK-LGKRVLQI 34 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4788899999999999887776653 47787766
No 297
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.032 Score=59.64 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=30.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE-EcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV-LDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv-lDdv 246 (945)
.+++.+.|.|||||||+|.+..-...... +++|+| .|-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG-KKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence 47899999999999999998766665555 557777 6665
No 298
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.49 E-value=0.033 Score=59.13 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=27.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-||+||||+|..+...... .++|+|+|
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~-~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAK-LGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 57888899999999999888877663 47787766
No 299
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.40 E-value=0.041 Score=63.02 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=40.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------------CceEEEEEcCccCCCcCC
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------RKKIFLVLDDVWDGNCNK 253 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------~~~~LlvlDdv~~~~~~~ 253 (945)
+.-+++-++|++|+||||||.-++.+....- ++...+|+|.++-.....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~ 403 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAA 403 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHH
Confidence 4568999999999999999999887643111 677789999997654333
Q ss_pred hhhHHhhc
Q 002265 254 WEPFFRCL 261 (945)
Q Consensus 254 ~~~l~~~~ 261 (945)
.+.+...+
T Consensus 404 Vdvilslv 411 (877)
T KOG1969|consen 404 VDVILSLV 411 (877)
T ss_pred HHHHHHHH
Confidence 44444443
No 300
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.38 E-value=0.032 Score=59.41 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=27.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-|||||||+|..+...... .++|+|+|
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~-~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE-MGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 47888899999999999887776653 47788877
No 301
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.36 E-value=0.17 Score=53.04 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=34.1
Q ss_pred Cceecch---hHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRV---DEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~---~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+..+|-. +.++++.+++.... .....-+.|+|.+|.|||++++.+....
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~--~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK--RHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc--ccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 4555543 34566666665432 3445679999999999999999988654
No 302
>PLN02796 D-glycerate 3-kinase
Probab=94.35 E-value=0.047 Score=58.48 Aligned_cols=42 Identities=29% Similarity=0.280 Sum_probs=34.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
..-+|||.|..|+||||||+.+.........+...|.+||..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 467899999999999999999998776543445677789884
No 303
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.34 E-value=0.021 Score=34.14 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=14.7
Q ss_pred cccEEEecCCCCccccCccccc
Q 002265 608 NLQKLDIRRCRNLRELPAGIGK 629 (945)
Q Consensus 608 ~L~~L~L~~~~~l~~lP~~i~~ 629 (945)
+|++|||++|. +..+|+++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 47778888874 6677776554
No 304
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.33 E-value=0.034 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999985443
No 305
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.32 E-value=0.041 Score=51.97 Aligned_cols=39 Identities=38% Similarity=0.349 Sum_probs=29.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.+|-|.|.+|+||||||+++.........+-++|=-|++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 588999999999999999999988876544444433444
No 306
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.32 E-value=0.043 Score=61.38 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=74.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc---------ccC----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---------VNS---------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~---------~~~---------------- 235 (945)
..++||++.++.+...+..+. -|-|+|++|+|||++|+.+..... ..+
T Consensus 20 ~~i~gre~vI~lll~aalag~-------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~ 92 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE-------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 92 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC-------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh
Confidence 468999999999988887543 488999999999999998875321 110
Q ss_pred --------Cce-E----EEEEcCccCCCcCChhhHHhhccCCC--CC-------cEEEEEcCchHHHH-------HhcCC
Q 002265 236 --------RKK-I----FLVLDDVWDGNCNKWEPFFRCLKNDL--HG-------GKILVTTRNVSVAR-------MMGTT 286 (945)
Q Consensus 236 --------~~~-~----LlvlDdv~~~~~~~~~~l~~~~~~~~--~g-------s~iiiTtr~~~~~~-------~~~~~ 286 (945)
.+. + ++++|+++.........+...+.... .| .++++++.+. +.. .+..-
T Consensus 93 ~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE~g~~leAL~DRF 171 (498)
T PRK13531 93 DEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPEADSSLEALYDRM 171 (498)
T ss_pred hcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-CcccCCchHHhHhhE
Confidence 011 1 69999999876555555655553211 11 2454444442 221 11111
Q ss_pred CceeeeCCCCChHHH-HHHHHHH
Q 002265 287 ELDIISIEQLAEEEC-WSLFERL 308 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~-~~lf~~~ 308 (945)
...+.+.+++.++. .+++...
T Consensus 172 -liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 172 -LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -EEEEECCCCCchHHHHHHHHcc
Confidence 23688899985444 7777653
No 307
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.28 E-value=0.042 Score=55.24 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=27.1
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
+|||.|..|+||||||+.+.... ..++-.++=.||..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 58999999999999999998765 22333455556543
No 308
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.27 E-value=0.13 Score=48.46 Aligned_cols=73 Identities=25% Similarity=0.334 Sum_probs=46.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC--------------------------------CceEEEEEcCccCC-CcCCh
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------------------RKKIFLVLDDVWDG-NCNKW 254 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------------------~~~~LlvlDdv~~~-~~~~~ 254 (945)
.+++|.|..|.|||||++.+........ .+.-++++|+--.. +....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 5899999999999999999887643211 44557788877432 12233
Q ss_pred hhHHhhccCCCCCcEEEEEcCchHHHHH
Q 002265 255 EPFFRCLKNDLHGGKILVTTRNVSVARM 282 (945)
Q Consensus 255 ~~l~~~~~~~~~gs~iiiTtr~~~~~~~ 282 (945)
+.+...+... +..||++|.+.+....
T Consensus 107 ~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 107 EALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 3444444332 2468888877665544
No 309
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.27 E-value=0.12 Score=49.67 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-..+-++|++|.||||+.+.+|...+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 35789999999999999999998654
No 310
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.25 E-value=0.038 Score=58.71 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=28.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-||+||||+|..+...... .++|+|+|
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~-~G~kVlli 35 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGKKVMIV 35 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 46888899999999999988887764 57788776
No 311
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.24 E-value=0.085 Score=61.39 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------C--
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------R-- 236 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~-- 236 (945)
...++|....+.++.+.+..-.. .-.-|-|+|..|+|||++|+.+++...... +
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~---~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~ 262 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA---SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV 262 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc
Confidence 45799999999999888875432 344688999999999999999986532110 0
Q ss_pred ------------------ceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 237 ------------------KKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 237 ------------------~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
..=-|+||+|..........+...+.... ...|||.||..
T Consensus 263 ~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 263 KGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred ccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 01137899998766555566666654321 24588888754
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.22 E-value=0.078 Score=55.85 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=28.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..++++++|++|+||||.+..++.... ..++++++|
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEE
Confidence 468999999999999999998887664 335666665
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.22 E-value=0.11 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.|..|.|||||.+.++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988754
No 314
>PRK06762 hypothetical protein; Provisional
Probab=94.21 E-value=0.034 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 315
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.17 Score=57.87 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=70.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC---------------------------------CceEEEEEcCccCC----
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------------------RKKIFLVLDDVWDG---- 249 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------------------~~~~LlvlDdv~~~---- 249 (945)
..-|-|.|..|+|||+||+++++...... ...-+|||||++-.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 34688999999999999999998765221 56779999999431
Q ss_pred --CcCChhhH---Hhhcc------CCCCCcE--EEEEcCchHHHHH-hcC--CCceeeeCCCCChHHHHHHHHHHhccCC
Q 002265 250 --NCNKWEPF---FRCLK------NDLHGGK--ILVTTRNVSVARM-MGT--TELDIISIEQLAEEECWSLFERLVFFDR 313 (945)
Q Consensus 250 --~~~~~~~l---~~~~~------~~~~gs~--iiiTtr~~~~~~~-~~~--~~~~~~~l~~l~~~~~~~lf~~~~~~~~ 313 (945)
...+|... ...+. ....+.+ +|.|.....-... +.. .-..+..+..+...+-.++++...-...
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 11233221 11111 1123333 4444443322111 111 1124678888888887777766542211
Q ss_pred CCcchHHHHHHHHHHHHHcCC-ChhHHHH
Q 002265 314 SSEDREKLESIGRKIARNCKG-LPLAAKV 341 (945)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~c~g-lPLai~~ 341 (945)
. ........-++.+|+| .|.-+++
T Consensus 591 ~----~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 591 S----DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred h----hhhhHHHHHHHHhcCCccchhHHH
Confidence 1 1112222237778876 4444443
No 316
>PLN02348 phosphoribulokinase
Probab=94.17 E-value=0.07 Score=58.10 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
+...+|||.|.+|+||||+|+.+.+....
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999987653
No 317
>PRK06547 hypothetical protein; Provisional
Probab=94.17 E-value=0.04 Score=53.64 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
....+|+|.|++|+||||+|+.+...... .++-+||+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~-----~~~~~d~~~ 50 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF-----QLVHLDDLY 50 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC-----Ceeccccee
Confidence 35789999999999999999999876432 234456663
No 318
>PRK03839 putative kinase; Provisional
Probab=94.11 E-value=0.033 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHhccccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.|.|.|++|+||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 319
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.10 E-value=0.33 Score=49.34 Aligned_cols=171 Identities=12% Similarity=0.138 Sum_probs=99.6
Q ss_pred eecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------------
Q 002265 183 VCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------------- 235 (945)
Q Consensus 183 ~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------------- 235 (945)
+.++++..+.+...... .+..-+-++|+.|.||-|.+..+.+..-...
T Consensus 15 l~~~~e~~~~Lksl~~~-----~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST-----GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred cccHHHHHHHHHHhccc-----CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 56666666766665542 3567789999999999998866655421100
Q ss_pred -----------------------------------CceE-EEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hH
Q 002265 236 -----------------------------------RKKI-FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VS 278 (945)
Q Consensus 236 -----------------------------------~~~~-LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~ 278 (945)
.+.| ++|+-.+++-..+.-..+......-...+|+|+...+ ..
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCccc
Confidence 2222 4555555443334444455555444556676664332 12
Q ss_pred HHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHHHHHHH-hcCC-------
Q 002265 279 VARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAKVIGNL-LRSK------- 349 (945)
Q Consensus 279 ~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~-L~~~------- 349 (945)
+....... .-.+++...+++|....++..+-...- ..+ .+++++|+++++| +--|+-++-.. +.+.
T Consensus 170 iIepIrSR-Cl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~ 244 (351)
T KOG2035|consen 170 IIEPIRSR-CLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQ 244 (351)
T ss_pred chhHHhhh-eeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCC
Confidence 22222222 236899999999999999887643322 111 6789999999987 45555544322 1111
Q ss_pred C-CHHHHHHHHhhhc
Q 002265 350 S-TVEEWESILESEM 363 (945)
Q Consensus 350 ~-~~~~w~~~l~~~~ 363 (945)
. ..-+|+.+..+..
T Consensus 245 ~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 245 VIPKPDWEIYIQEIA 259 (351)
T ss_pred CCCCccHHHHHHHHH
Confidence 1 2347887766533
No 320
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.0096 Score=59.93 Aligned_cols=99 Identities=25% Similarity=0.256 Sum_probs=70.7
Q ss_pred CCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccc
Q 002265 518 LDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE 597 (945)
Q Consensus 518 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~ 597 (945)
+.+.+.|++.++. +.++ .+..+|+.|.||. |+-|.|..| ..+..+++|+.|.|+.|.|.
T Consensus 18 l~~vkKLNcwg~~------L~DI--sic~kMp~lEVLs------------LSvNkIssL-~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCG------LDDI--SICEKMPLLEVLS------------LSVNKISSL-APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCC------ccHH--HHHHhcccceeEE------------eeccccccc-hhHHHHHHHHHHHHHhcccc
Confidence 4556667776665 2221 2467899999999 555666666 45788999999999999988
Q ss_pred ccC--hhhhcCCcccEEEecCCCCccccCc-----ccccccCCCeee
Q 002265 598 ILP--ETLCELYNLQKLDIRRCRNLRELPA-----GIGKLMNMRSLL 637 (945)
Q Consensus 598 ~lp--~~i~~L~~L~~L~L~~~~~l~~lP~-----~i~~L~~L~~L~ 637 (945)
.+- .-+.+|++|++|.|..|.--.+-+. .+.-|++|+.||
T Consensus 77 sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 77 SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 664 3468899999999988765444443 245688888875
No 321
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.09 E-value=0.015 Score=67.82 Aligned_cols=180 Identities=23% Similarity=0.231 Sum_probs=92.8
Q ss_pred CCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccc-c
Q 002265 518 LDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELG-I 596 (945)
Q Consensus 518 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~-i 596 (945)
+++|+.|.+.+...... .........+++|+.|+++++... ..... ...+.....+.+|+.|+++++. +
T Consensus 187 ~~~L~~l~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~-~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITD----DSLDALALKCPNLEELDLSGCCLL-----ITLSP-LLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred CchhhHhhhcccccCCh----hhHHHHHhhCchhheecccCcccc-----cccch-hHhhhhhhhcCCcCccchhhhhcc
Confidence 56677777666543211 113344667788888886553100 00000 0011123345778888888877 4
Q ss_pred c-ccChhhh-cCCcccEEEecCCCCcc--ccCcccccccCCCeeecCCCCCCcc--CccCCCCCCCCCcCCcccccCCcC
Q 002265 597 E-ILPETLC-ELYNLQKLDIRRCRNLR--ELPAGIGKLMNMRSLLNGETYSLKY--MPIGISKLTSLRTLDRFVVGGGVD 670 (945)
Q Consensus 597 ~-~lp~~i~-~L~~L~~L~L~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~ 670 (945)
+ ..-..+. .+++|++|.+.+|..+. .+-.....+++|++|++++|..+.. +.....++++|+.|.+.....
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--- 333 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--- 333 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---
Confidence 4 1112232 37889998888887532 2222335677899999988865421 111233355555544322211
Q ss_pred CCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEecc
Q 002265 671 GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGR 723 (945)
Q Consensus 671 ~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 723 (945)
+..++.+.+.++..... .......+..+++++.+.+..+.
T Consensus 334 ------c~~l~~~~l~~~~~~~~-------d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 ------CPSLTDLSLSGLLTLTS-------DDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred ------CccHHHHHHHHhhccCc-------hhHhHHHHhcCCCcchhhhhhhh
Confidence 23344444333221110 12334456677888888777665
No 322
>PF13245 AAA_19: Part of AAA domain
Probab=94.09 E-value=0.058 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.1
Q ss_pred EEEEEEecCCCcHHHHHHHHh
Q 002265 208 HVISLVGLGGIGKTTLAQLAY 228 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~ 228 (945)
+++.|.|.+|.|||+++....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478889999999995554443
No 323
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.05 E-value=0.09 Score=53.23 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHhccc---cCCCCeEEEEEEe-cCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 186 RVDEKNELLSKLCESS---EQQKGLHVISLVG-LGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 186 r~~~~~~l~~~l~~~~---~~~~~~~vi~i~G-~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..+++.++...|.... ..++..++|+|+| -||+||||+|..+........++|+|+|
T Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 11 IAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3455666666655221 1234578899885 8999999999988887665557788776
No 324
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.03 E-value=0.041 Score=56.71 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=26.3
Q ss_pred EEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 212 LVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 212 i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
|+||+|+||||+++.+.+.......+-+++=||-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 68999999999999999988877777777778855
No 325
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.2 Score=49.71 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=76.9
Q ss_pred ceec-chhHHHHHHHHHhccccC--------CCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 182 EVCG-RVDEKNELLSKLCESSEQ--------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 182 ~~vg-r~~~~~~l~~~l~~~~~~--------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
+.+| .+..+++|.+.+.-...+ -...+=+.++|++|.|||-||++|+++....+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegs 226 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGS 226 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhH
Confidence 3454 477777777766432211 23456788999999999999999999866444
Q ss_pred ------------CceEEEEEcCccCCCc--------------CChhhHHhhccC--CCCCcEEEEEcCchHHHHHhcCCC
Q 002265 236 ------------RKKIFLVLDDVWDGNC--------------NKWEPFFRCLKN--DLHGGKILVTTRNVSVARMMGTTE 287 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~--------------~~~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~~~~~~ 287 (945)
.-.-.|+.|.++.... ...-.+...+.. ..+.-|||..|..-++....-..+
T Consensus 227 rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrp 306 (404)
T KOG0728|consen 227 RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRP 306 (404)
T ss_pred HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCC
Confidence 4566888898855210 011111112221 235678888887666554321111
Q ss_pred ---ceeeeCCCCChHHHHHHHHHH
Q 002265 288 ---LDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 288 ---~~~~~l~~l~~~~~~~lf~~~ 308 (945)
++.++..+-+++.-.++++-+
T Consensus 307 gridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 307 GRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred CcccccccCCCCCHHHHHHHHHHh
Confidence 346777777777777776544
No 326
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.01 E-value=0.11 Score=52.91 Aligned_cols=53 Identities=30% Similarity=0.434 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLD 244 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlD 244 (945)
+..++++.+.... ....+|||.|++|+||+||.-++.........+=-.|-+|
T Consensus 14 ~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 14 EARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp HHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 4456666665432 3567999999999999999999888877653333344455
No 327
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.96 E-value=0.16 Score=60.79 Aligned_cols=130 Identities=16% Similarity=0.104 Sum_probs=74.1
Q ss_pred CceecchhHHHHHHHHHh---cccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLC---ESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~---~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.++.|.+...+++.+.+. .... ...-.+-|.++|++|+|||++|+.+.+.....+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~ 231 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 231 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHH
Confidence 356677665555544332 1100 001123489999999999999999987654321
Q ss_pred -----------CceEEEEEcCccCCC----------cCChhhHHhhc----cC--CCCCcEEEEEcCchHHHHHhcC---
Q 002265 236 -----------RKKIFLVLDDVWDGN----------CNKWEPFFRCL----KN--DLHGGKILVTTRNVSVARMMGT--- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~----------~~~~~~l~~~~----~~--~~~gs~iiiTtr~~~~~~~~~~--- 285 (945)
....+|++|+++... ...++.....+ .. ...+.-||.||...+.....-.
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~Rpg 311 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 311 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCc
Confidence 356799999996521 01122221111 11 1234455557776654332211
Q ss_pred CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 286 TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
.-++.+.+...+.++-.+++..+..
T Consensus 312 Rfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 312 RFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred ccceEEEcCCCCHHHHHHHHHHHhh
Confidence 1135788888888888888887663
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.94 E-value=0.11 Score=50.74 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|.|..|.|||||++.+....
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 489999999999999999987653
No 329
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.92 E-value=0.099 Score=55.27 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
....+|||.|..|+||||+|+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998775543
No 330
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.073 Score=51.08 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.++.|.|++|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999987
No 331
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.90 E-value=0.041 Score=51.45 Aligned_cols=27 Identities=41% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
..+.|+|++|+||||+|+.++......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478999999999999999998876644
No 332
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.35 Score=56.30 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=67.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------CceEEEEEcCccCCC-----
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------------RKKIFLVLDDVWDGN----- 250 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------------~~~~LlvlDdv~~~~----- 250 (945)
...+.+-++|++|.|||.||+++++..+..+ .....|++|.+...-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~ 353 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC
Confidence 3456899999999999999999999554333 567899999995410
Q ss_pred -c-----CChhhHHhhccCC--CCCcEEEEEcCchHHHHHh-cC--CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 251 -C-----NKWEPFFRCLKND--LHGGKILVTTRNVSVARMM-GT--TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 251 -~-----~~~~~l~~~~~~~--~~gs~iiiTtr~~~~~~~~-~~--~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
. .-..++...+... ..+-.||-||......... -. .-+..+.+..-+.++..+.|..+.-
T Consensus 354 ~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 354 SEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 0 0111222222211 2333455566554443321 11 1134889999999999999998874
No 333
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.86 E-value=0.043 Score=58.89 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=26.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+++-+.|-|||||||+|.+..-....+ ++|+|+|
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR-GKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEe
Confidence 578899999999999998877766543 6777777
No 334
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.041 Score=53.86 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
..+|+|-||=|+||||||+.+.++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999998763
No 335
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.85 E-value=0.23 Score=57.49 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=37.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|....+.++.+.+..-.. .-.-|-|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~---~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR---SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3599999999888888754332 2356899999999999999999864
No 336
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.81 E-value=0.045 Score=57.36 Aligned_cols=26 Identities=38% Similarity=0.253 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
..|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 36889999999999999999887655
No 337
>PRK04040 adenylate kinase; Provisional
Probab=93.80 E-value=0.047 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 338
>PRK00625 shikimate kinase; Provisional
Probab=93.80 E-value=0.041 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|.++||.|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987654
No 339
>PHA00729 NTP-binding motif containing protein
Probab=93.79 E-value=0.053 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+...|.|+|.+|+||||||..+.+..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999987763
No 340
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.75 E-value=0.058 Score=58.40 Aligned_cols=41 Identities=15% Similarity=-0.031 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
...++++.+..-. .-+.+.|+|..|+|||||++.+.+....
T Consensus 119 ~~~RvID~l~PiG----kGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIG----KGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecC----CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455777776422 2356799999999999999998776543
No 341
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.74 E-value=0.038 Score=55.56 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=63.3
Q ss_pred cCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc-------cccccCcccc
Q 002265 516 CGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-------NVRKLIHLKY 588 (945)
Q Consensus 516 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-------~i~~L~~L~~ 588 (945)
.-+..+..+++++|..- .. -...+...+.+-++||+-+++.-. .+-...++|+ .+-++++|+.
T Consensus 27 ~~~d~~~evdLSGNtig-tE-A~e~l~~~ia~~~~L~vvnfsd~f--------tgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 27 EMMDELVEVDLSGNTIG-TE-AMEELCNVIANVRNLRVVNFSDAF--------TGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred HhhcceeEEeccCCccc-HH-HHHHHHHHHhhhcceeEeehhhhh--------hcccHHHHHHHHHHHHHHHhcCCccee
Confidence 34778889999998731 11 112344446677889888854421 1111123333 4557899999
Q ss_pred ccccccccc-ccC----hhhhcCCcccEEEecCCCCcccc
Q 002265 589 LNLSELGIE-ILP----ETLCELYNLQKLDIRRCRNLREL 623 (945)
Q Consensus 589 L~L~~~~i~-~lp----~~i~~L~~L~~L~L~~~~~l~~l 623 (945)
.+||+|.+. ..| .-|+.-+.|.+|.+.+|. +..+
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 999999876 333 456778999999999997 6533
No 342
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=93.73 E-value=0.052 Score=58.14 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+|-||+||||+|..+....... ++|+|+|
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~-g~rVLlI 34 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEM-GKRVLQL 34 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 478889999999999999988877754 6777665
No 343
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=93.73 E-value=0.062 Score=57.65 Aligned_cols=36 Identities=36% Similarity=0.461 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..++|+|.|-||+||||.+..+...... .++|+|+|
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~-~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEE
Confidence 3578888999999999998877666543 47888877
No 344
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.71 E-value=0.093 Score=57.33 Aligned_cols=42 Identities=33% Similarity=0.295 Sum_probs=32.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
..-+|||.|..|.|||||++.+.........+...|-+||.-
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 467999999999999999999976554443445667789884
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.71 E-value=0.17 Score=51.31 Aligned_cols=78 Identities=10% Similarity=0.113 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc---ccc----------------------------------------------CCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND---EVN----------------------------------------------SRK 237 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~---~~~----------------------------------------------~~~ 237 (945)
.+++.|+|+.|.||||+.+.+.... ... ..+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 4789999999999999988875211 000 067
Q ss_pred eEEEEEcCccCCCc-CCh----hhHHhhccCC-CCCcEEEEEcCchHHHHHhc
Q 002265 238 KIFLVLDDVWDGNC-NKW----EPFFRCLKND-LHGGKILVTTRNVSVARMMG 284 (945)
Q Consensus 238 ~~LlvlDdv~~~~~-~~~----~~l~~~~~~~-~~gs~iiiTtr~~~~~~~~~ 284 (945)
+.|++||....... ... ..+...+... ..+..+|+||-+.+++....
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 88999999865431 111 1222333222 22457999999988877653
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.70 E-value=0.061 Score=57.20 Aligned_cols=37 Identities=35% Similarity=0.361 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccccc-CCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVN-SRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-~~~~~Llv 242 (945)
..++++++|++|+||||++..+....... .++++.+|
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li 230 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALI 230 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 35799999999999999999988766544 23455444
No 347
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.66 E-value=0.048 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|.|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998643
No 348
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.61 E-value=0.055 Score=53.20 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
...+|.+.|+.|+||||+|+.++......+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~ 35 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKY 35 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 345899999999999999999998776543
No 349
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.13 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
..++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999998876
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.59 E-value=0.074 Score=57.32 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
...+++++|++|+||||++..++..... .+++++++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEE
Confidence 4679999999999999999999887663 35677665
No 351
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.59 E-value=0.24 Score=51.85 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=37.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..++|-.++..++-.++...... +.-.-|.|+|+.|.|||+|......+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~-gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH-GESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh-cCCCceEEEccCCCCceEeeHHHHhh
Confidence 45889999999998888754432 23456788999999999998766555
No 352
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.57 E-value=0.15 Score=55.00 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=37.7
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 191 NELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.++.+.+... .....+|+|.|.+|+|||||+..+.........+-.+|-+|.-
T Consensus 43 ~~l~~~~~~~---~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 43 QELLDALLPH---TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred HHHHHHHhhc---CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4455555331 2357899999999999999999988877755445556666764
No 353
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.52 E-value=0.06 Score=57.03 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=26.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+|+|.|=||+||||+|..+...... .++|+|+|
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~-~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH-CCCcEEEE
Confidence 5888899999999999888887763 46777765
No 354
>PRK05439 pantothenate kinase; Provisional
Probab=93.52 E-value=0.13 Score=54.90 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcccccc--CCceEEEEEcCcc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVN--SRKKIFLVLDDVW 247 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--~~~~~LlvlDdv~ 247 (945)
...-+|||.|.+|+||||+|+.+....... ..+-.+|=+||.-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 457899999999999999999887754322 1233456667763
No 355
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.83 Score=48.69 Aligned_cols=95 Identities=9% Similarity=0.129 Sum_probs=60.8
Q ss_pred CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcC-chHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCC
Q 002265 236 RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTR-NVSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRS 314 (945)
Q Consensus 236 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr-~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~ 314 (945)
+++-++|+|++..........+...+......+.+|++|. ...+....... +.++++.++++++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SR-c~~~~f~~l~~~~l~~~l~~~~---~- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSR-CQVFNVKEPDQQKILAKLLSKN---K- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhC-eEEEECCCCCHHHHHHHHHHcC---C-
Confidence 3677788898876655556677778877777887776554 44444433322 3589999999999887776531 1
Q ss_pred CcchHHHHHHHHHHHHHcCCChhHHHH
Q 002265 315 SEDREKLESIGRKIARNCKGLPLAAKV 341 (945)
Q Consensus 315 ~~~~~~~~~~~~~i~~~c~glPLai~~ 341 (945)
+ .+.+..++...+|.=-|+..
T Consensus 164 --~----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 --E----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred --C----hhHHHHHHHHcCCHHHHHHH
Confidence 1 12355566666763345554
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.50 E-value=0.11 Score=53.55 Aligned_cols=53 Identities=28% Similarity=0.387 Sum_probs=39.0
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 191 NELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.+++..+.... ....+|||.|.+|+||+||.-.+-.....+..+=-.|.+|-=
T Consensus 38 ~~ll~~l~p~t---G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 38 RELLRALYPRT---GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred HHHHHHHhhcC---CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 45566665433 367899999999999999999888887666555556666643
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.49 E-value=2.4 Score=42.01 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
..++|.|..|.||||+++.+...... ..+.. +++|..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i-~ied~~ 62 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP--DERII-TIEDTA 62 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC--CCCEE-EECCcc
Confidence 57999999999999999998876552 33443 345543
No 358
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.48 E-value=0.044 Score=53.88 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD 248 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~ 248 (945)
+|+|.|.+|+||||+|+.+..... .-.+|=+||.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccC
Confidence 589999999999999999988752 233455677754
No 359
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.46 E-value=0.16 Score=52.17 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH-hccccccHHHHHHHHHHHHHHHhhHHHHHHH
Q 002265 6 VSFLLDQLKSIPQDQVKEKWRLVTGVEQEVEKLTKNLRAIQAVLEDAE-QRQMKQDKVVTLWLDQLRDASYDMEDVLDEW 84 (945)
Q Consensus 6 v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~-~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~ 84 (945)
|..++..|-. ........+.-++.+++-++.+++.+|.||+... ....+ -.....+..++-..||++|.++|-+
T Consensus 298 VdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nk-h~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 298 VDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNK-HDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchh-hhhhhhHHHHHHHHHhheeeeeehh
Confidence 4445555554 4444455667889999999999999999999874 43333 2337889999999999999999976
Q ss_pred H
Q 002265 85 I 85 (945)
Q Consensus 85 ~ 85 (945)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 360
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.12 Score=49.98 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
+.|-+.|.+|+||||+|+++....+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 35778899999999999998876543
No 361
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.42 E-value=0.14 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.|..|.|||||++.++..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999887754
No 362
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.41 E-value=0.074 Score=47.90 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=26.0
Q ss_pred EEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
|.+.|.||+||||++..+...... .++++++|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE-KGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEE
Confidence 789999999999999999887755 35666544
No 363
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.39 E-value=0.1 Score=47.86 Aligned_cols=42 Identities=24% Similarity=0.124 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 188 DEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
++..++-+.|...- ..-.+|.+.|.-|+||||+++.+.....
T Consensus 6 ~~t~~l~~~l~~~l---~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL---DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC---CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444443321 1235899999999999999999998754
No 364
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.36 E-value=0.073 Score=46.09 Aligned_cols=36 Identities=39% Similarity=0.556 Sum_probs=26.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
++.+.|.+|+||||++..+...... .+.+++ ++||+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~-~~~d~ 36 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK-RGKRVL-LIDDY 36 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCeEE-EECCE
Confidence 4788999999999999999888765 345553 44433
No 365
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.35 E-value=0.18 Score=49.60 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999887764
No 366
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.35 E-value=0.3 Score=56.47 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=38.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|....++++.+.+..-.. .-.-|-|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~---s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR---SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4599999999988888754322 2346899999999999999999876
No 367
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.58 Score=51.33 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=71.6
Q ss_pred EEEEecCCCcHHHHHHHHhccccccC---------------------CceEEEEEcCccCCC------cC---C------
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNS---------------------RKKIFLVLDDVWDGN------CN---K------ 253 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~~~~LlvlDdv~~~~------~~---~------ 253 (945)
--++|++|.|||+++.+++|...-.- ..+-+||+.|++-.- .. .
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~ 317 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLS 317 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcc
Confidence 45899999999999999998754221 667778888885310 00 0
Q ss_pred ---hhhHHhhcc--CCCC-CcE-EEEEcCchHHHHHh--c-CCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 002265 254 ---WEPFFRCLK--NDLH-GGK-ILVTTRNVSVARMM--G-TTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLES 323 (945)
Q Consensus 254 ---~~~l~~~~~--~~~~-gs~-iiiTtr~~~~~~~~--~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~ 323 (945)
+--+.-++. +... +-| ||.||...+-.... . ..-+..+.+.-=+.+.-..||.++..... ++ .
T Consensus 318 ~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h----~ 390 (457)
T KOG0743|consen 318 RVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DH----R 390 (457)
T ss_pred eeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Cc----c
Confidence 111221111 1122 224 55577765433321 1 11123577777888888888888775322 11 2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHh
Q 002265 324 IGRKIARNCKGLPLAAKVIGNLL 346 (945)
Q Consensus 324 ~~~~i~~~c~glPLai~~~~~~L 346 (945)
+..+|.+...|.-+.=..+|..|
T Consensus 391 L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 391 LFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hhHHHHHHhhcCccCHHHHHHHH
Confidence 44455555555544444444443
No 368
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.31 E-value=0.13 Score=59.82 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=35.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..++|....+.++.+.+..-.. .-.-|-|+|..|+||+++|++++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~---~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM---LDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC---CCCCEEEECCCCccHHHHHHHHHHh
Confidence 4689999888888877754322 2234789999999999999998753
No 369
>PRK13768 GTPase; Provisional
Probab=93.29 E-value=0.081 Score=55.26 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=28.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE-Ec
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV-LD 244 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv-lD 244 (945)
.++.|+|.||+||||++..+...... .++++++| +|
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECC
Confidence 57899999999999999888877654 35666665 55
No 370
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.29 E-value=0.057 Score=47.35 Aligned_cols=33 Identities=39% Similarity=0.362 Sum_probs=25.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
-..++|.|+.|.|||||++.+. ...+.++=||+
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI-------KRKHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeH
Confidence 3689999999999999999986 23455555555
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.28 E-value=0.038 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=17.9
Q ss_pred EEEEecCCCcHHHHHHHHhccccccC
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
|-|+|.+|+||||+|+.+.......+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--E
T ss_pred EeeECCCccHHHHHHHHHHHHcCCce
Confidence 57899999999999999988765443
No 372
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.27 E-value=0.081 Score=50.11 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.3
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEE
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVL 243 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llvl 243 (945)
++++.|.+|+||||++..+....... +.+++++-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~-g~~v~ii~ 34 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR-GKRVAVLA 34 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 47899999999999999998776554 45555543
No 373
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.21 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.|..|.|||||.+.++..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988765
No 374
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.17 E-value=0.091 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 002265 209 VISLVGLGGIGKTTLAQLAY 228 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~ 228 (945)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.16 E-value=0.081 Score=58.26 Aligned_cols=39 Identities=28% Similarity=0.224 Sum_probs=29.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDD 245 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDd 245 (945)
..++.++|++|+||||+|..++.......++++.+|=-|
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 468999999999999999999876544445666555433
No 376
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.14 E-value=0.066 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|.|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999987754
No 377
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.085 Score=54.35 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=35.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------------CceEEEEEcCccC
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------------RKKIFLVLDDVWD 248 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------------~~~~LlvlDdv~~ 248 (945)
....++|||++|.|||-+|++|+....+.+ ...+.|.+|+++.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 456899999999999999999998776554 4568899999854
No 378
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.11 E-value=0.19 Score=54.96 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=35.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..++|.++....+...+... +-+-+.|.+|+|||+||+.+.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~-------~~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG-------GHVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC-------CCEEEECCCCccHHHHHHHHHHHhC
Confidence 34888888888877776643 3588999999999999999887654
No 379
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.07 E-value=0.12 Score=48.40 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=28.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.+|.|+|..|+|||||++.+.+....+ +.++..|.|.-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEcc
Confidence 479999999999999999999987754 55666555544
No 380
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.48 Score=47.45 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=38.9
Q ss_pred CceecchhHHHHHHHHHhccccC--------CCCeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ--------QKGLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~--------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.++-|.+..++++++.+.-.-.+ -...+-+..||++|.|||-+|++.+.....
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 56889999999998877432111 123456789999999999999988766543
No 381
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.01 E-value=0.24 Score=47.04 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=30.5
Q ss_pred CceEEEEEcCccCC---CcCChhhHHhhccCCCCCcEEEEEcCch
Q 002265 236 RKKIFLVLDDVWDG---NCNKWEPFFRCLKNDLHGGKILVTTRNV 277 (945)
Q Consensus 236 ~~~~LlvlDdv~~~---~~~~~~~l~~~~~~~~~gs~iiiTtr~~ 277 (945)
++-=|+|||++-.. ..-+.+.+.+.+.....+.-||+|.|+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34559999998432 2235567777777777788999999984
No 382
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.00 E-value=0.089 Score=53.03 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+.++|.|.+|+|||+|+..+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CEEEEEcCcccccchhhHHHHhccc
Confidence 4799999999999999999887654
No 383
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.99 E-value=0.058 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
||.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987653
No 384
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.98 E-value=0.067 Score=52.44 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...|.++|++|+||||+|+.+.....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 385
>PRK06217 hypothetical protein; Validated
Probab=92.93 E-value=0.075 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|.|.|++|+||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998654
No 386
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.86 E-value=0.16 Score=61.16 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=55.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------C---
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------R--- 236 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~--- 236 (945)
+.++|....+.++.+.+..... .-.-|-|+|..|+||+++|+.+++...... +
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~ 401 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR 401 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC
Confidence 4688999888888887765432 223478999999999999999987532110 1
Q ss_pred --------ceE------EEEEcCccCCCcCChhhHHhhccC
Q 002265 237 --------KKI------FLVLDDVWDGNCNKWEPFFRCLKN 263 (945)
Q Consensus 237 --------~~~------LlvlDdv~~~~~~~~~~l~~~~~~ 263 (945)
.++ .|+||+|..........+...+..
T Consensus 402 ~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~ 442 (638)
T PRK11388 402 TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKT 442 (638)
T ss_pred cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhc
Confidence 012 489999987665556666666643
No 387
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=92.85 E-value=0.12 Score=54.64 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=27.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-||+||||+|..+....... + |+|+|
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~-G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSND-H-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC-C-EEEEE
Confidence 578888999999999999998877754 5 76655
No 388
>PRK13947 shikimate kinase; Provisional
Probab=92.83 E-value=0.069 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHhccccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
-|.|+||+|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999887643
No 389
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.82 E-value=0.079 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998843
No 390
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.80 E-value=0.11 Score=52.23 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
...+|+|+|++|+||||||+.+......
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999886643
No 391
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.59 Score=49.80 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=82.3
Q ss_pred CceecchhHHHHHHHHHhccccC---------CCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ---------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~---------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
.++-|.+...+.+.+...-.-.. -...+-|-++|++|.|||.||++++.+....+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~ 171 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEA 171 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHH
Confidence 46777788777777665322110 12345688999999999999999998876554
Q ss_pred -------------CceEEEEEcCccCCC-------cCChh----hHHhhccC--CCCCcEEEE---EcCchHHHHHhcCC
Q 002265 236 -------------RKKIFLVLDDVWDGN-------CNKWE----PFFRCLKN--DLHGGKILV---TTRNVSVARMMGTT 286 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~-------~~~~~----~l~~~~~~--~~~gs~iii---Ttr~~~~~~~~~~~ 286 (945)
=+...|.+|.|...- .+.-. +++..+.. .+.+.+|+| |-|..++-...-..
T Consensus 172 eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR 251 (386)
T KOG0737|consen 172 QKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRR 251 (386)
T ss_pred HHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHh
Confidence 356788999885410 00011 11222221 234447776 55655443332111
Q ss_pred CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 287 ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
-++.+.+.--+.++-.++++-..-.... .+.-+ ..+|++.+.|.-
T Consensus 252 ~p~rf~V~lP~~~qR~kILkviLk~e~~-e~~vD----~~~iA~~t~GyS 296 (386)
T KOG0737|consen 252 LPRRFHVGLPDAEQRRKILKVILKKEKL-EDDVD----LDEIAQMTEGYS 296 (386)
T ss_pred CcceeeeCCCchhhHHHHHHHHhccccc-CcccC----HHHHHHhcCCCc
Confidence 1235666555555555555443321111 12222 345777777754
No 392
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.72 E-value=0.072 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 393
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.72 E-value=0.076 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998764
No 394
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.71 E-value=0.16 Score=57.41 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=36.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC-CceEEEEEcCccCCCcCChhhHH
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS-RKKIFLVLDDVWDGNCNKWEPFF 258 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-~~~~LlvlDdv~~~~~~~~~~l~ 258 (945)
-.|++++|+.|+||||++..++....... .+++.+|-.|-+.. ..|+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Ri--gA~EQLr 306 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI--GGHEQLR 306 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccch--hHHHHHH
Confidence 36999999999999999999998775444 35787776666432 2344443
No 395
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.71 E-value=0.2 Score=57.35 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
++..+|||.|..|.||||||+.+.... ..-..|-+||.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEcce
Confidence 367899999999999999999998764 23456677775
No 396
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=92.70 E-value=0.092 Score=56.07 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=26.1
Q ss_pred EEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
|+|+|-|||||||+|..+...... .++|+|+|
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~-~G~rVLlI 34 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALAR-RGKKVLQI 34 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEE
Confidence 789999999999999888777663 46777665
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.69 E-value=0.32 Score=48.89 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=50.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc--------------------------cc-----------------------CCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE--------------------------VN-----------------------SRK 237 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~--------------------------~~-----------------------~~~ 237 (945)
.++++|.|+.|.||||+.+.+....- .. ..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 37899999999999999877642100 00 056
Q ss_pred eEEEEEcCccCCC-cCC----hhhHHhhccCCCCCcEEEEEcCchHHHHHhcC
Q 002265 238 KIFLVLDDVWDGN-CNK----WEPFFRCLKNDLHGGKILVTTRNVSVARMMGT 285 (945)
Q Consensus 238 ~~LlvlDdv~~~~-~~~----~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~~~ 285 (945)
+-|+++|...... ..+ ...+...+.. .|+.+|++|-+.+++..+..
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 7899999985432 111 1123333333 37899999999998887654
No 398
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.65 E-value=0.09 Score=52.64 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.++||+|..|.|||||++.+..-.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 47999999999999999999875554
No 399
>PRK13949 shikimate kinase; Provisional
Probab=92.64 E-value=0.082 Score=51.42 Aligned_cols=24 Identities=42% Similarity=0.391 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|.|+|+.|+||||+++.+.....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988765
No 400
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.61 E-value=0.47 Score=49.77 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+.++..+... .+..-++|+|..|.|||||.+.+.....
T Consensus 97 ~~~~~l~~l~~~----~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 97 AADKLLPYLVRN----NRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred cHHHHHHHHHhC----CCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 344455555432 2467899999999999999999887654
No 401
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.58 E-value=0.079 Score=49.30 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|.|-|++|+||||+|+.+.++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999988654
No 402
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.57 E-value=0.12 Score=50.77 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
-.+|+|.|++|+||||+|+.+......
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999987653
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.55 E-value=0.18 Score=56.64 Aligned_cols=41 Identities=37% Similarity=0.319 Sum_probs=32.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
...+|.++|.+|+||||.|..++..... .++++++|=-|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCC
Confidence 4679999999999999999999877664 4677777755553
No 404
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.52 E-value=0.11 Score=50.21 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999877654
No 405
>PF13479 AAA_24: AAA domain
Probab=92.50 E-value=0.13 Score=52.16 Aligned_cols=20 Identities=45% Similarity=0.416 Sum_probs=18.4
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 002265 208 HVISLVGLGGIGKTTLAQLA 227 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~ 227 (945)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999988
No 406
>PRK10867 signal recognition particle protein; Provisional
Probab=92.43 E-value=0.12 Score=57.86 Aligned_cols=42 Identities=40% Similarity=0.484 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
...+|.++|.+|+||||.|..++.......++++++|==|..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 467999999999999999988887766554677777644543
No 407
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.41 E-value=0.13 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++|+|..|+|||||++.+.+..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC
Confidence 578999999999999999988653
No 408
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.41 E-value=0.012 Score=57.68 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=71.1
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
+..++.-++|| ++.+.+..+-..++-++.|..|+++.+.|..+|++++.+..+..+++..|. ++.+|
T Consensus 38 i~~~kr~tvld------------~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p 104 (326)
T KOG0473|consen 38 IASFKRVTVLD------------LSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQP 104 (326)
T ss_pred hhccceeeeeh------------hhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCC
Confidence 56677888888 666666666677888888999999999999999999999999999988776 88899
Q ss_pred cccccccCCCeeecCCCC
Q 002265 625 AGIGKLMNMRSLLNGETY 642 (945)
Q Consensus 625 ~~i~~L~~L~~L~l~~~~ 642 (945)
.+.++++.++++++-++.
T Consensus 105 ~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccccCCcchhhhccCc
Confidence 999999999999887774
No 409
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.40 E-value=0.11 Score=49.52 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=26.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
|++|+|+.|+|||||+.++....+.+ +.++-+|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999987644 4555544
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.40 E-value=0.12 Score=57.41 Aligned_cols=50 Identities=28% Similarity=0.278 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccCCCcCChhhHH
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWDGNCNKWEPFF 258 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~~~~~~~~~l~ 258 (945)
...+|.++|..|+||||+|..++..... .++++++|=-|.... ..|+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~--aA~eQLk 148 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRA--GAFDQLK 148 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccch--hHHHHHH
Confidence 3679999999999999999988876653 366777774455332 4555554
No 411
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.34 E-value=0.17 Score=56.54 Aligned_cols=52 Identities=27% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCceecchhHHHHHHHHHh-------cccc----CCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 180 EGEVCGRVDEKNELLSKLC-------ESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~-------~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+..++|.+..++.+...+. .... ....-.-+.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999988887744331 1000 00123568899999999999999998643
No 412
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.31 E-value=0.16 Score=54.17 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=44.0
Q ss_pred CCceecchhHHHHHHHHHhccccC-CCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQ-QKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~-~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+|+|.++.++++++.+...+.+ +..-+|+-+.|+-|.||||||..+-+-.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 357999999999999999865543 34578999999999999999998876544
No 413
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.31 E-value=0.081 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.25 E-value=0.25 Score=49.83 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=48.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc---cc-C---------------------------------------------Cce
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE---VN-S---------------------------------------------RKK 238 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~---~~-~---------------------------------------------~~~ 238 (945)
.+++|.|..|.||||+.+.+....- .. + ...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 6899999999999999998872110 00 0 567
Q ss_pred EEEEEcCccCCCcCCh-hhH----HhhccCCCCCcEEEEEcCchHHHHHhc
Q 002265 239 IFLVLDDVWDGNCNKW-EPF----FRCLKNDLHGGKILVTTRNVSVARMMG 284 (945)
Q Consensus 239 ~LlvlDdv~~~~~~~~-~~l----~~~~~~~~~gs~iiiTtr~~~~~~~~~ 284 (945)
-++++|..-....... ..+ ...+. ..+..||++|.+.++...+.
T Consensus 110 ~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 110 SLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhh
Confidence 8999998854321111 112 22222 23678999999988877655
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.21 E-value=0.12 Score=58.16 Aligned_cols=35 Identities=34% Similarity=0.459 Sum_probs=26.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc-ccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE-VNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~-~~~~~~~Llv 242 (945)
+++.++|++|+||||++..++.... ...++++.+|
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5899999999999999988877655 3335566555
No 416
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.18 E-value=0.55 Score=53.41 Aligned_cols=34 Identities=44% Similarity=0.646 Sum_probs=24.2
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHH-HHHHHhcc
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTT-LAQLAYNN 230 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTt-La~~~~~~ 230 (945)
.++|++.+. .-+||.|+|..|.|||| ||+.+|.+
T Consensus 361 R~~ll~~ir-------~n~vvvivgETGSGKTTQl~QyL~ed 395 (1042)
T KOG0924|consen 361 RDQLLSVIR-------ENQVVVIVGETGSGKTTQLAQYLYED 395 (1042)
T ss_pred HHHHHHHHh-------hCcEEEEEecCCCCchhhhHHHHHhc
Confidence 445555553 24699999999999987 66666654
No 417
>PRK08149 ATP synthase SpaL; Validated
Probab=92.18 E-value=0.13 Score=57.14 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-..++|+|..|+|||||++.++...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC
Confidence 3578999999999999999888654
No 418
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.13 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999988775543
No 419
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.18 E-value=0.098 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998753
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.16 E-value=0.1 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 421
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.13 E-value=0.11 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+++|+|+.|+|||||++.+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3789999999999999999977543
No 422
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.12 E-value=0.11 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHhccccc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999876654
No 423
>PRK15453 phosphoribulokinase; Provisional
Probab=92.09 E-value=0.17 Score=52.54 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=30.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
...+|+|.|-+|+||||+|+.+........-+-.++-.|+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 456999999999999999999986554333334555566664
No 424
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.09 E-value=0.14 Score=56.08 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=29.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCC-ceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSR-KKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~-~~~LlvlDdv 246 (945)
-.+++++|+.|+||||++.++........+ +++.+|-.|.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 358999999999999999999887654433 4555554444
No 425
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.09 E-value=0.1 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+|+|+|+.|+||||||+.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998854
No 426
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.25 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
..+-|.|..|+|||||-+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4788999999999999988764
No 427
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.07 E-value=0.16 Score=51.90 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=25.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+.|+|+|-|||||+|.+..+.-..... ++|+|.|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~-G~kVl~i 34 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM-GKKVLQI 34 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEE
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc-cceeeEe
Confidence 469999999999999998877665544 4666666
No 428
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=91.95 E-value=0.79 Score=53.03 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=34.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..++|....+.++...+..-.. ....+.|.|..|+|||++|+.++..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~---~~~~vli~Ge~GtGK~~~A~~ih~~ 180 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR---SDITVLINGESGTGKELVARALHRH 180 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC---cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3588887777777776654221 2345789999999999999998754
No 429
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.95 E-value=0.32 Score=54.27 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=31.7
Q ss_pred hHHHHHHHHHh--ccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 188 DEKNELLSKLC--ESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 188 ~~~~~l~~~l~--~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+-++++..||. ..-...-+-+|+-|.|++|+||||-++.+....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 45677777876 111112356799999999999999998877653
No 430
>PRK13975 thymidylate kinase; Provisional
Probab=91.90 E-value=0.12 Score=51.89 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998765
No 431
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=91.90 E-value=0.12 Score=50.95 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=27.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+.|+|+|-|||||+|.++.+.-..... ++|+|+|
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~-GkkVl~v 35 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAEL-GKKVLIV 35 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHc-CCeEEEE
Confidence 569999999999999998776655544 7788777
No 432
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.89 E-value=0.17 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-..++|+|..|+|||||.+.+.+...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 35789999999999999998887654
No 433
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.84 E-value=0.78 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.--|.++|.+|+|||+|+..+.+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999998864
No 434
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.84 E-value=0.2 Score=50.24 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
+|.|.|+.|.||||++..+........+++++.+=|.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 68999999999999999887776544455666555544
No 435
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.83 E-value=0.29 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-+..||+|.+|.||||+.+.++...
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCC
Confidence 3579999999999999999888753
No 436
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.83 E-value=0.15 Score=45.03 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=24.5
Q ss_pred EEEEe-cCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 210 ISLVG-LGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 210 i~i~G-~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
|++.| -||+||||+|..+...... .++++++|
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~ 34 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLI 34 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEE
Confidence 56666 7999999999998887765 45666655
No 437
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.80 E-value=0.15 Score=52.49 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=30.5
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD 248 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~ 248 (945)
+|+|.|-.|+||||+|+.+....+....+-.+|-.|+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5899999999999999999887654433445666777643
No 438
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=1.2 Score=51.35 Aligned_cols=131 Identities=19% Similarity=0.113 Sum_probs=74.8
Q ss_pred cCCceecchhHHHHH---HHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 179 DEGEVCGRVDEKNEL---LSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l---~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
.-.++-|.|+..+++ ++.|..... +..=.+=|.++|++|.|||.||+++.....+-+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvG 227 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 227 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCC
Confidence 345778988765555 555543221 012245688999999999999999999877654
Q ss_pred -------------CceEEEEEcCccCCC----------cCChhh-HHhhc---cCCC--CCcEEEEEcCchHHHHHhc--
Q 002265 236 -------------RKKIFLVLDDVWDGN----------CNKWEP-FFRCL---KNDL--HGGKILVTTRNVSVARMMG-- 284 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~----------~~~~~~-l~~~~---~~~~--~gs~iiiTtr~~~~~~~~~-- 284 (945)
.-.+.|++|.++... .+.+++ +.+.+ .... .|-.|+..|...+|....-
T Consensus 228 AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlR 307 (596)
T COG0465 228 ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLR 307 (596)
T ss_pred cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcC
Confidence 336899999885421 123333 22222 2222 3334444454455543321
Q ss_pred -CCCceeeeCCCCChHHHHHHHHHHh
Q 002265 285 -TTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 285 -~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
..-++.+.++..+-..-.++++-++
T Consensus 308 pgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 308 PGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CCCcceeeecCCcchhhHHHHHHHHh
Confidence 1113466666666666666666554
No 439
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.76 E-value=0.43 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999887654
No 440
>PHA02774 E1; Provisional
Probab=91.76 E-value=0.32 Score=55.50 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------CceEEEEEcCc
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------RKKIFLVLDDV 246 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------~~~~LlvlDdv 246 (945)
+..+..++.. .+...-+.|+|++|+|||.+|..+.+-...+. ...-++||||+
T Consensus 421 l~~lk~~l~~----~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 421 LTALKDFLKG----IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAKIALLDDA 488 (613)
T ss_pred HHHHHHHHhc----CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCCEEEEecC
Confidence 4445555532 23456899999999999999998887643111 23347899999
No 441
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.75 E-value=0.17 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-+.++|+|..|+|||||++.+++..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999888754
No 442
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.74 E-value=0.099 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhccc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~ 231 (945)
|.++|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 443
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.73 E-value=0.17 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-+.++|.|-.|+|||+|+..+.++..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhh
Confidence 35789999999999999988877653
No 444
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.73 E-value=0.14 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.72 E-value=0.16 Score=50.22 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999774
No 446
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.67 E-value=0.26 Score=53.02 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEE
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIF 240 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~L 240 (945)
....+|+|.|.+|+|||||+..+....... +.++.
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~ 66 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR-GLKVA 66 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEE
Confidence 357899999999999999999988766544 34443
No 447
>PRK14530 adenylate kinase; Provisional
Probab=91.65 E-value=0.11 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|.|+|++|+||||+|+.+.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 448
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=91.63 E-value=0.26 Score=47.72 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~ 230 (945)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998865
No 449
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.60 E-value=0.22 Score=46.21 Aligned_cols=39 Identities=31% Similarity=0.372 Sum_probs=26.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
+.|.++|..|+|||||++.+......-..-..+...|++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~ 40 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNT 40 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccE
Confidence 468899999999999999998765433222333334443
No 450
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.58 E-value=0.19 Score=49.26 Aligned_cols=33 Identities=48% Similarity=0.526 Sum_probs=25.9
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++.+.|++|+||||+++.+....... ++++++|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEE
Confidence 68899999999999999988766544 4555544
No 451
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.58 E-value=0.13 Score=49.26 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHhccc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~ 231 (945)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
No 452
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.57 E-value=0.12 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999988653
No 453
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.53 E-value=0.19 Score=56.34 Aligned_cols=41 Identities=37% Similarity=0.350 Sum_probs=31.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...++.++|.+|+||||.|..++.....+.++++++|==|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 46799999999999999999888776544467777764344
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.41 E-value=0.16 Score=51.21 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..+.+.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5688999999999999999998653
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.41 E-value=0.16 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|..|+|||||.+.+......
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 48999999999999999999887665
No 456
>PRK13946 shikimate kinase; Provisional
Probab=91.40 E-value=0.13 Score=50.93 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+.|.+.|+.|+||||+|+.+.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999987643
No 457
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.45 Score=47.31 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+-+|.|+.|.||+|||..+.-+.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999998887664
No 458
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.39 E-value=0.48 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|+++|.+|+|||||+..+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999987654
No 459
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.35 E-value=0.24 Score=47.05 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 188 DEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+.++++.+.+. + +++.++|..|||||||+..+.....
T Consensus 24 ~g~~~l~~~l~-------~-k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 24 EGIEELKELLK-------G-KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTHHHHHHHHT-------T-SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCHHHHHHHhc-------C-CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45677777774 2 6899999999999999999988643
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.30 E-value=0.2 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-..++|+|..|+|||||++.+....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999887654
No 461
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.39 Score=55.73 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCccccccCCceecchhHHHHHHHHHhccccCC-------CCeEEEEEEecCCCcHHHHHHHHhccccccC---------
Q 002265 172 ERTISLIDEGEVCGRVDEKNELLSKLCESSEQQ-------KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS--------- 235 (945)
Q Consensus 172 ~~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~-------~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------- 235 (945)
.+..+...=.++-|.++-+.+|.+-+...-... ...+=|-+||++|.|||-+|++|+-...-.|
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Q ss_pred --------------------CceEEEEEcCccC
Q 002265 236 --------------------RKKIFLVLDDVWD 248 (945)
Q Consensus 236 --------------------~~~~LlvlDdv~~ 248 (945)
-..+.|+||.++.
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccc
No 462
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.26 E-value=0.15 Score=48.76 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccC
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
-|.++||.|+||||+.+++++.....+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999998776554
No 463
>PRK13948 shikimate kinase; Provisional
Probab=91.26 E-value=0.15 Score=49.99 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+.|.++||.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988754
No 464
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.24 E-value=0.26 Score=54.26 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=37.8
Q ss_pred CCceecchhHHHHHHHHHhcc--------cc-CCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 180 EGEVCGRVDEKNELLSKLCES--------SE-QQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~--------~~-~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+..++|.++.++.+...+... .. .....+-|.++|+.|+|||+||+.+.....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345889988888887666431 00 001135789999999999999999988653
No 465
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.09 E-value=0.15 Score=52.07 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.-|+|+|++|+|||||+..+..+....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~ 32 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE 32 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence 568999999999999999998876553
No 466
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.09 E-value=0.37 Score=43.38 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=32.4
Q ss_pred ceecchhH----HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 182 EVCGRVDE----KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 182 ~~vgr~~~----~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.++|..-. ++.|...+... ..+..=|++..|..|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35555443 34444445432 2345679999999999999999988876
No 467
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.06 E-value=0.32 Score=48.16 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=30.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.+..+..+.-... +.+=+.++|.+|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAa-------G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA-------GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH-------CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHc-------CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 467888877766654443 2356899999999999999998763
No 468
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.04 E-value=0.26 Score=50.11 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.+++|.|..|.|||||++.++......
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~ 54 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPT 54 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 589999999999999999999866543
No 469
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.03 E-value=0.2 Score=52.78 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
+|||.|..|+||||+++.+....... .-..+..||+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~--~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSD--LVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCC--ceEEEECccc
Confidence 58999999999999999998765432 2235566766
No 470
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.98 E-value=0.16 Score=48.35 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988654
No 471
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.96 E-value=1.2 Score=48.47 Aligned_cols=89 Identities=16% Similarity=0.277 Sum_probs=52.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc----------
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN---------- 276 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~---------- 276 (945)
-..|.|.|..|.||||+++++...... +.| .++++|..+.. ++. ....++. ++++
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~--~~r-ivtiEd~~El~----------l~~-~~~v~l~-~~~~~~~~~~~t~~ 226 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP--QER-LITIEDTLELV----------IPH-ENHVRLL-YSKNGAGLGAVTAE 226 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC--CCC-EEEECCCcccc----------CCC-CCEEEEE-eeccccCcCccCHH
Confidence 357999999999999999999887654 345 45567764321 111 1111121 1211
Q ss_pred hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhcc
Q 002265 277 VSVARMMGTTELDIISIEQLAEEECWSLFERLVFF 311 (945)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~ 311 (945)
.-+...+... ...+-+.++...||+.+|....-+
T Consensus 227 ~ll~~~LR~~-pD~IivGEiR~~ea~~~l~a~~tG 260 (344)
T PRK13851 227 HLLQASLRMR-PDRILLGEMRDDAAWAYLSEVVSG 260 (344)
T ss_pred HHHHHHhcCC-CCeEEEEeeCcHHHHHHHHHHHhC
Confidence 1122233333 347778888888999988765433
No 472
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=90.94 E-value=0.2 Score=55.92 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-..++|+|..|+|||||++.+.+..
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC
Confidence 3579999999999999999888654
No 473
>COG4240 Predicted kinase [General function prediction only]
Probab=90.92 E-value=0.27 Score=48.32 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccC-CceEEEEEcCccCC
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-RKKIFLVLDDVWDG 249 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-~~~~LlvlDdv~~~ 249 (945)
+..-++||.|+-|+||||++..+++....++ .+-.-+-|||.--.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt 93 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT 93 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence 3477999999999999999999999888777 35556789998654
No 474
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.90 E-value=0.092 Score=29.04 Aligned_cols=16 Identities=50% Similarity=0.823 Sum_probs=5.7
Q ss_pred cccEEEecCCCCccccC
Q 002265 608 NLQKLDIRRCRNLRELP 624 (945)
Q Consensus 608 ~L~~L~L~~~~~l~~lP 624 (945)
+|+.|++++|. +.++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 44455555544 44433
No 475
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.89 E-value=0.16 Score=28.08 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=7.7
Q ss_pred cccccccccccccccC
Q 002265 585 HLKYLNLSELGIEILP 600 (945)
Q Consensus 585 ~L~~L~L~~~~i~~lp 600 (945)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 476
>PRK15115 response regulator GlrR; Provisional
Probab=90.86 E-value=0.44 Score=54.79 Aligned_cols=92 Identities=22% Similarity=0.176 Sum_probs=58.3
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------------
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------- 235 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------- 235 (945)
.++|....+.++.+....-.. .-..|.|.|.+|+|||++|+.+++......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~---~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ---SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc---CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcC
Confidence 577877777776665543221 223577999999999999999876532110
Q ss_pred ---------------CceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 236 ---------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 236 ---------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
...-.|+||+|..........+...+.... ...+||.||..
T Consensus 212 ~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence 112358899997765555566666654321 13478887764
No 477
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=90.84 E-value=0.21 Score=52.51 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=25.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
++|+|+|.+|+|||||+..+......+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999887664
No 478
>PRK05922 type III secretion system ATPase; Validated
Probab=90.84 E-value=0.24 Score=55.13 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++|+|..|+|||||.+.+.+..
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC
Confidence 468999999999999999887653
No 479
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.83 E-value=0.18 Score=50.95 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEE
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVL 243 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llvl 243 (945)
.++++|+++|..|+|||||..++...... +.++-++-
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~--~~~v~v~~ 56 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD--EVKIAVIE 56 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc--CCeEEEEE
Confidence 47999999999999999999998876432 24544444
No 480
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=90.82 E-value=0.22 Score=49.81 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=24.8
Q ss_pred EEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
...-+-||+||||+|..+...... .++++++|
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~-~g~~Vlli 33 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALAR-KGKKVLLI 33 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEE
T ss_pred EEEcCCCCccHHHHHHHHHhcccc-cccccccc
Confidence 345578999999999998887776 56777766
No 481
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.78 E-value=2.4 Score=45.74 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD 248 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~ 248 (945)
-..+.|.|..|.||||+++++...... ..+ .++++|..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~--~~~-iv~ied~~E 182 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPK--DER-IITIEDTRE 182 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCc--ccc-EEEEcCccc
Confidence 358999999999999999999876643 233 345566543
No 482
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.73 E-value=0.24 Score=55.17 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-..++|.|..|+|||||.+.+++...
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~ 187 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE 187 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC
Confidence 45799999999999999999987653
No 483
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.72 E-value=0.15 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~ 230 (945)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999999875
No 484
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.72 E-value=0.31 Score=49.66 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
. .+++|+|..|.|||||++.+........
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~ 51 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGLEKPDG 51 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5 7999999999999999999988765443
No 485
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=90.71 E-value=0.28 Score=46.81 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~ 230 (945)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999876
No 486
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=90.71 E-value=1.6 Score=46.06 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc-------------------------c----C-----
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-------------------------N----S----- 235 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~-------------------------~----~----- 235 (945)
.+++...+..+ .-.+..-++|+.|+||+++|..+....-. . .
T Consensus 6 ~~~L~~~i~~~----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR 81 (290)
T PRK05917 6 WEALIQRVRDQ----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPR 81 (290)
T ss_pred HHHHHHHHHcC----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHH
Confidence 34555555432 24678889999999999999665432210 0 0
Q ss_pred ------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc-hHHHHHhcCCCceeeeCCCC
Q 002265 236 ------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN-VSVARMMGTTELDIISIEQL 296 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~-~~~~~~~~~~~~~~~~l~~l 296 (945)
+++-++|+|++.....+.+..+...+.....++.+|++|.+ ..+.....+. ...+.+.++
T Consensus 82 ~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR-cq~~~~~~~ 154 (290)
T PRK05917 82 AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR-SLSIHIPME 154 (290)
T ss_pred HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc-ceEEEccch
Confidence 45557788999887777778888888777777777766666 4444332221 236666654
No 487
>PRK04182 cytidylate kinase; Provisional
Probab=90.67 E-value=0.18 Score=49.61 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987654
No 488
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.65 E-value=0.35 Score=53.04 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
..+=+-|||.-|.|||.|.-.+|+....
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4667899999999999999999987655
No 489
>PLN02200 adenylate kinase family protein
Probab=90.65 E-value=0.2 Score=51.52 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997754
No 490
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.62 E-value=0.17 Score=48.04 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccC
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNS 235 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~ 235 (945)
.+|++|+|..|+|||||...+....+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 36899999999999999999988776553
No 491
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.61 E-value=0.19 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.+||++|+.|+||||.|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 492
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.60 E-value=0.2 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHhcccc
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+.|.|.+|+|||+||.++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999998866543
No 493
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.60 E-value=0.27 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-..++|+|..|+|||||++.+.+...
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~ 162 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE 162 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999998886543
No 494
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.59 E-value=0.16 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhccccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.|.++|++|+||||+|+++......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999876653
No 495
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.54 E-value=0.26 Score=53.46 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..++++++|+.|+||||++..+....... ++++.+|
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 46799999999999999999988765333 4555544
No 496
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.52 E-value=1.9 Score=46.51 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc-CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEE----cCchHHHHH
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN-SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVT----TRNVSVARM 282 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~-~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiT----tr~~~~~~~ 282 (945)
..+.|.|..|+||||+++++....... ...| +++++|..+.... .....-+.+ |-...+...
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~r-ivtIEd~~El~~~------------~~~~v~~~~~~~~~~~~ll~~a 215 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTER-VFIIEDTGEIQCA------------AENYVQYHTSIDVNMTALLKTT 215 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCce-EEEEcCCCccccC------------CCCEEEEecCCCCCHHHHHHHH
Confidence 568899999999999999998764222 2344 4566666432110 001111111 111222233
Q ss_pred hcCCCceeeeCCCCChHHHHHHHHHHhc
Q 002265 283 MGTTELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 283 ~~~~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
+... ...+-+.++...||+.+|....-
T Consensus 216 LR~~-PD~IivGEiR~~Ea~~~l~A~~t 242 (319)
T PRK13894 216 LRMR-PDRILVGEVRGPEALDLLMAWNT 242 (319)
T ss_pred hcCC-CCEEEEeccCCHHHHHHHHHHHc
Confidence 3333 34788888888899998865543
No 497
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.50 E-value=0.24 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.1
Q ss_pred eEEEEEEecCCCcHHHHH-HHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLA-QLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa-~~~~~~ 230 (945)
-+.++|.|..|+|||+|| ..+.+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~ 93 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ 93 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh
Confidence 357999999999999996 555543
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.49 E-value=0.2 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+++|+|..|.||||+++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999988654
No 499
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=90.48 E-value=0.51 Score=46.72 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=47.4
Q ss_pred EEEEEecCCCcHHHHHHHHhccccc--------------------------cC-----------------------CceE
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEV--------------------------NS-----------------------RKKI 239 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------~~-----------------------~~~~ 239 (945)
++.|.|+.|.||||+.+.+.-.... .. .++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 4789999999999999887621100 00 4788
Q ss_pred EEEEcCccCCCcCC-hhhH----HhhccCCCCCcEEEEEcCchHHHHHhc
Q 002265 240 FLVLDDVWDGNCNK-WEPF----FRCLKNDLHGGKILVTTRNVSVARMMG 284 (945)
Q Consensus 240 LlvlDdv~~~~~~~-~~~l----~~~~~~~~~gs~iiiTtr~~~~~~~~~ 284 (945)
++++|..-...... -..+ ...+.. ..++.+|++|.+.++...+.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 99999986532111 1122 222221 13678999999988776654
No 500
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=90.48 E-value=0.45 Score=57.88 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=42.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC-----------------------------------------CceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------------------------RKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------------------------~~~~LlvlDdv 246 (945)
+++.|.|.+|+||||+++.+........ .+.-+||+|++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 4788999999999999988764322111 24568899998
Q ss_pred cCCCcCChhhHHhhccCCCCCcEEEEEcC
Q 002265 247 WDGNCNKWEPFFRCLKNDLHGGKILVTTR 275 (945)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~gs~iiiTtr 275 (945)
.-.+...+..+..... ..|++||+.--
T Consensus 449 sMv~~~~~~~Ll~~~~--~~~~kliLVGD 475 (744)
T TIGR02768 449 GMVGSRQMARVLKEAE--EAGAKVVLVGD 475 (744)
T ss_pred ccCCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 7654344444443222 35788876653
Done!