Query 002265
Match_columns 945
No_of_seqs 453 out of 3902
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9E-40 3.1E-44 382.2 18.0 268 184-479 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.6E-32 5.5E-37 322.0 14.6 237 182-471 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 7.5E-32 2.6E-36 350.5 19.5 263 179-477 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.3E-29 1.1E-33 297.8 19.5 257 180-474 123-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.8E-27 6E-32 291.1 19.9 427 495-943 199-767 (768)
6 4eco_A Uncharacterized protein 99.9 2E-25 6.7E-30 266.6 16.4 342 495-919 205-599 (636)
7 4ecn_A Leucine-rich repeat pro 99.9 2.2E-25 7.4E-30 270.2 16.0 344 495-919 447-839 (876)
8 4eco_A Uncharacterized protein 99.9 1E-25 3.4E-30 269.1 12.5 372 496-919 81-578 (636)
9 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-24 4.4E-29 259.8 20.6 176 495-688 31-214 (606)
10 4ecn_A Leucine-rich repeat pro 99.9 2.3E-25 7.8E-30 270.1 13.8 367 496-919 323-818 (876)
11 3t6q_A CD180 antigen; protein- 99.9 4.3E-24 1.5E-28 255.2 17.5 174 495-687 32-211 (606)
12 3rgz_A Protein brassinosteroid 99.9 2.5E-24 8.4E-29 263.3 14.7 332 495-850 177-549 (768)
13 3vq2_A TLR4, TOLL-like recepto 99.9 3E-24 1E-28 256.6 14.2 395 495-919 55-557 (606)
14 2z63_A TOLL-like receptor 4, v 99.9 2.6E-24 8.7E-29 255.3 12.8 140 495-641 27-187 (570)
15 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-24 1.3E-28 252.5 12.8 153 495-665 25-182 (549)
16 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-23 1.1E-27 242.8 19.8 40 879-919 440-480 (520)
17 3t6q_A CD180 antigen; protein- 99.9 5.4E-23 1.9E-27 245.6 21.7 118 495-618 56-190 (606)
18 4fmz_A Internalin; leucine ric 99.9 1E-23 3.5E-28 233.2 14.2 301 496-919 44-345 (347)
19 3v47_A TOLL-like receptor 5B a 99.9 3.5E-23 1.2E-27 238.1 18.0 354 495-919 29-407 (455)
20 1o6v_A Internalin A; bacterial 99.9 6.4E-23 2.2E-27 236.1 20.0 338 497-919 47-387 (466)
21 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5E-27 227.6 19.2 304 517-919 43-351 (390)
22 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5.1E-27 240.3 19.1 304 517-919 49-357 (597)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.4E-27 238.8 17.5 370 499-919 34-509 (562)
24 3j0a_A TOLL-like receptor 5; m 99.9 5E-22 1.7E-26 245.5 22.6 279 495-806 23-373 (844)
25 1ziw_A TOLL-like receptor 3; i 99.9 4.3E-22 1.5E-26 241.2 21.0 154 495-667 24-183 (680)
26 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-21 4.4E-26 223.3 22.8 268 580-918 81-350 (457)
27 2z63_A TOLL-like receptor 4, v 99.9 1.9E-22 6.5E-27 239.2 16.3 373 501-919 12-482 (570)
28 2id5_A Lingo-1, leucine rich r 99.9 6.2E-22 2.1E-26 229.0 19.8 149 500-668 15-165 (477)
29 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-22 1.3E-26 235.4 18.0 383 502-918 11-508 (549)
30 4fmz_A Internalin; leucine ric 99.9 5.7E-22 2E-26 219.1 15.6 279 495-894 65-344 (347)
31 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-21 1.5E-25 236.9 22.8 96 496-597 48-161 (844)
32 3v47_A TOLL-like receptor 5B a 99.9 4.1E-21 1.4E-25 220.7 19.4 345 500-919 14-383 (455)
33 1ziw_A TOLL-like receptor 3; i 99.9 5.4E-21 1.8E-25 231.6 21.0 375 500-919 8-442 (680)
34 1jl5_A Outer protein YOPM; leu 99.9 2.7E-21 9.1E-26 220.5 15.9 343 495-919 10-408 (454)
35 4fcg_A Uncharacterized protein 99.9 5.3E-21 1.8E-25 208.7 17.1 232 547-917 79-311 (328)
36 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-21 1.9E-25 223.6 18.4 342 496-896 21-481 (520)
37 3o6n_A APL1; leucine-rich repe 99.8 2.6E-21 8.8E-26 217.5 14.0 282 547-919 43-330 (390)
38 1o6v_A Internalin A; bacterial 99.8 1.3E-20 4.6E-25 216.7 17.6 324 495-902 67-393 (466)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.3E-20 8E-25 220.2 17.3 344 495-897 51-511 (562)
40 3bz5_A Internalin-J, INLJ; leu 99.8 2.5E-20 8.4E-25 212.7 16.8 282 545-917 38-328 (457)
41 3oja_B Anopheles plasmodium-re 99.8 1E-20 3.5E-25 224.5 14.2 281 548-919 50-336 (597)
42 1ogq_A PGIP-2, polygalacturona 99.8 5.3E-21 1.8E-25 207.4 7.1 246 496-808 50-304 (313)
43 2id5_A Lingo-1, leucine rich r 99.8 5.4E-20 1.9E-24 212.6 14.7 293 495-850 31-331 (477)
44 2ft3_A Biglycan; proteoglycan, 99.8 3E-19 1E-23 195.7 18.1 285 497-850 34-331 (332)
45 4fcg_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 201.9 10.5 187 568-803 111-309 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-19 6.6E-24 197.2 15.2 291 549-918 33-331 (332)
47 1xku_A Decorin; proteoglycan, 99.8 3.7E-19 1.3E-23 194.8 15.7 291 549-917 31-329 (330)
48 1jl5_A Outer protein YOPM; leu 99.8 1.4E-18 4.8E-23 198.0 18.9 158 495-688 90-247 (454)
49 1xku_A Decorin; proteoglycan, 99.8 6.6E-19 2.3E-23 192.9 15.6 285 497-849 32-329 (330)
50 4g8a_A TOLL-like receptor 4; l 99.8 3.2E-19 1.1E-23 214.4 13.4 145 495-658 51-200 (635)
51 1ogq_A PGIP-2, polygalacturona 99.8 9.3E-20 3.2E-24 197.6 4.6 224 495-786 75-304 (313)
52 3g06_A SSPH2 (leucine-rich rep 99.8 8.6E-18 2.9E-22 197.3 20.9 257 549-920 40-297 (622)
53 2z80_A TOLL-like receptor 2, v 99.7 1.8E-18 6.3E-23 191.2 10.1 263 501-806 36-312 (353)
54 4g8a_A TOLL-like receptor 4; l 99.7 6.9E-18 2.4E-22 202.7 15.4 121 495-634 75-200 (635)
55 2z80_A TOLL-like receptor 2, v 99.7 1.3E-18 4.5E-23 192.4 6.1 259 495-788 51-316 (353)
56 2z66_A Variable lymphocyte rec 99.7 9.7E-18 3.3E-22 181.5 12.4 238 500-806 11-259 (306)
57 3zyi_A Leucine-rich repeat-con 99.7 2.1E-17 7.3E-22 189.2 14.5 240 499-784 57-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 187.1 14.6 239 500-784 47-290 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-16 4.9E-21 186.9 19.1 254 497-850 41-295 (622)
60 3zyi_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 179.5 18.3 235 568-918 61-301 (452)
61 1ozn_A Reticulon 4 receptor; N 99.7 6.4E-17 2.2E-21 173.0 11.4 219 499-786 14-238 (285)
62 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-19 7.5E-24 206.7 -8.8 360 496-919 3-410 (461)
63 3zyj_A Leucine-rich repeat-con 99.7 6.2E-16 2.1E-20 176.3 18.9 235 568-918 50-290 (440)
64 3ogk_B Coronatine-insensitive 99.7 3.2E-18 1.1E-22 203.8 -0.6 204 496-720 112-326 (592)
65 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.4E-22 180.5 4.2 220 539-806 24-248 (317)
66 2z66_A Variable lymphocyte rec 99.6 2.7E-16 9.2E-21 170.1 11.5 227 495-785 27-260 (306)
67 1z7x_W Ribonuclease inhibitor; 99.6 1.8E-18 6E-23 199.1 -10.7 358 496-918 28-438 (461)
68 3o53_A Protein LRIM1, AGAP0063 99.6 1.2E-17 4E-22 181.5 -3.6 241 516-809 31-276 (317)
69 1wwl_A Monocyte differentiatio 99.6 1.9E-16 6.6E-21 171.5 5.4 244 516-806 40-307 (312)
70 1wwl_A Monocyte differentiatio 99.6 2E-16 7E-21 171.3 4.8 247 545-918 39-307 (312)
71 1ozn_A Reticulon 4 receptor; N 99.6 2.6E-15 8.9E-20 160.4 12.9 211 568-806 18-236 (285)
72 3qfl_A MLA10; coiled-coil, (CC 99.6 4.4E-15 1.5E-19 132.0 11.4 81 4-89 1-83 (115)
73 2p1m_B Transport inhibitor res 99.6 3.5E-17 1.2E-21 194.8 -3.1 373 496-920 105-519 (594)
74 3oja_A Leucine-rich immune mol 99.6 1.2E-15 4E-20 175.6 9.4 193 579-806 53-248 (487)
75 3oja_A Leucine-rich immune mol 99.6 3.1E-16 1E-20 180.5 4.1 233 518-803 33-270 (487)
76 1p9a_G Platelet glycoprotein I 99.6 8E-15 2.7E-19 156.5 13.4 199 545-784 6-206 (290)
77 1h6u_A Internalin H; cell adhe 99.6 4.2E-15 1.4E-19 160.4 11.0 190 546-806 38-228 (308)
78 2xwt_C Thyrotropin receptor; s 99.6 3E-14 1E-18 147.8 15.6 73 573-648 23-97 (239)
79 1h6u_A Internalin H; cell adhe 99.5 1.9E-14 6.4E-19 155.3 13.5 145 496-667 41-185 (308)
80 2z62_A TOLL-like receptor 4, v 99.5 9.8E-15 3.4E-19 155.1 9.4 198 549-785 28-236 (276)
81 2xwt_C Thyrotropin receptor; s 99.5 7.7E-15 2.6E-19 152.2 8.2 136 508-666 23-167 (239)
82 3ogk_B Coronatine-insensitive 99.5 2.9E-16 1E-20 186.8 -3.0 359 517-918 110-524 (592)
83 2z62_A TOLL-like receptor 4, v 99.5 7.4E-15 2.5E-19 156.1 8.1 127 520-666 29-160 (276)
84 2o6q_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 150.1 12.8 168 498-687 18-190 (270)
85 2o6q_A Variable lymphocyte rec 99.5 7.9E-14 2.7E-18 147.5 14.4 194 549-806 16-216 (270)
86 1p9a_G Platelet glycoprotein I 99.5 4.3E-14 1.5E-18 150.8 12.3 170 496-688 10-182 (290)
87 2ast_B S-phase kinase-associat 99.5 1.7E-15 5.8E-20 166.2 1.2 209 578-849 62-282 (336)
88 2ca6_A RAN GTPase-activating p 99.5 5.5E-16 1.9E-20 173.6 -2.9 254 508-787 21-317 (386)
89 2p1m_B Transport inhibitor res 99.5 2.2E-16 7.6E-21 187.9 -8.2 343 516-919 102-493 (594)
90 4ay9_X Follicle-stimulating ho 99.5 8.5E-14 2.9E-18 153.2 11.0 101 568-670 16-119 (350)
91 3rfs_A Internalin B, repeat mo 99.5 4E-14 1.4E-18 149.9 7.2 61 580-641 81-143 (272)
92 2ast_B S-phase kinase-associat 99.5 1.9E-14 6.6E-19 157.7 4.2 207 544-805 63-282 (336)
93 4glp_A Monocyte differentiatio 99.4 6.2E-14 2.1E-18 151.6 7.0 231 517-806 62-305 (310)
94 3rfs_A Internalin B, repeat mo 99.4 3.8E-13 1.3E-17 142.3 12.4 179 545-786 37-218 (272)
95 3m19_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 140.2 12.3 147 499-667 17-167 (251)
96 4ay9_X Follicle-stimulating ho 99.4 3.2E-13 1.1E-17 148.6 10.5 235 500-804 13-255 (350)
97 2ca6_A RAN GTPase-activating p 99.4 7.2E-15 2.5E-19 164.4 -4.6 244 541-806 24-314 (386)
98 3cvr_A Invasion plasmid antige 99.4 1.9E-13 6.3E-18 158.4 7.1 188 549-790 59-247 (571)
99 1h6t_A Internalin B; cell adhe 99.4 8.7E-13 3E-17 140.8 10.8 142 497-665 47-188 (291)
100 4glp_A Monocyte differentiatio 99.4 3.7E-13 1.3E-17 145.5 7.7 189 539-785 105-306 (310)
101 1h6t_A Internalin B; cell adhe 99.4 8.2E-13 2.8E-17 141.1 10.0 169 546-784 43-211 (291)
102 4ezg_A Putative uncharacterize 99.4 9.3E-13 3.2E-17 131.9 9.4 148 496-667 44-193 (197)
103 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 134.9 11.3 153 495-667 34-191 (251)
104 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.8E-17 153.8 10.1 182 568-785 28-209 (605)
105 3e6j_A Variable lymphocyte rec 99.3 2.6E-12 8.9E-17 131.9 11.5 145 500-666 23-170 (229)
106 3goz_A Leucine-rich repeat-con 99.3 3.4E-13 1.2E-17 149.2 4.1 105 518-641 21-148 (362)
107 4b8c_D Glucose-repressible alc 99.3 3.1E-12 1.1E-16 153.9 12.0 157 496-668 173-329 (727)
108 2v9t_B SLIT homolog 2 protein 99.3 4E-12 1.4E-16 129.6 10.9 145 500-666 15-163 (220)
109 1m9s_A Internalin B; cell inva 99.3 2.9E-12 9.9E-17 150.2 10.8 163 497-687 44-206 (605)
110 3goz_A Leucine-rich repeat-con 99.3 2.4E-13 8.1E-18 150.5 1.2 239 538-806 11-295 (362)
111 4ezg_A Putative uncharacterize 99.3 1.5E-12 5.2E-17 130.3 6.6 151 546-723 41-192 (197)
112 2o6s_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 128.6 9.0 145 500-666 11-159 (208)
113 2v70_A SLIT-2, SLIT homolog 2 99.3 9.7E-12 3.3E-16 126.7 11.4 145 500-666 15-164 (220)
114 1dce_A Protein (RAB geranylger 99.3 6.6E-14 2.2E-18 163.2 -6.9 181 498-687 351-542 (567)
115 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 122.6 7.8 130 519-668 24-160 (168)
116 3cvr_A Invasion plasmid antige 99.2 1.2E-11 4.2E-16 143.2 11.0 176 497-724 60-242 (571)
117 1xeu_A Internalin C; cellular 99.2 1.3E-11 4.5E-16 129.4 10.2 105 545-668 37-141 (263)
118 2o6s_A Variable lymphocyte rec 99.2 1.3E-11 4.5E-16 124.7 9.3 146 495-666 27-176 (208)
119 1w5s_A Origin recognition comp 99.2 5.2E-11 1.8E-15 134.4 14.9 254 181-450 22-372 (412)
120 2ell_A Acidic leucine-rich nuc 99.2 8.6E-12 3E-16 121.3 7.1 134 495-650 23-165 (168)
121 2fna_A Conserved hypothetical 99.2 2.6E-10 9E-15 125.7 19.7 249 179-469 11-355 (357)
122 4b8c_D Glucose-repressible alc 99.2 1.7E-12 5.8E-17 156.3 1.9 123 510-652 215-337 (727)
123 2qen_A Walker-type ATPase; unk 99.2 3E-10 1E-14 124.9 19.4 253 179-470 10-348 (350)
124 1xeu_A Internalin C; cellular 99.2 3.1E-11 1.1E-15 126.6 10.8 144 496-667 41-184 (263)
125 2je0_A Acidic leucine-rich nuc 99.2 6.2E-12 2.1E-16 119.5 4.8 124 519-662 17-147 (149)
126 3e6j_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 123.5 10.1 129 495-642 39-170 (229)
127 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.8E-16 120.7 6.7 131 514-666 14-151 (176)
128 2xot_A Amphoterin-induced prot 99.2 2.2E-11 7.7E-16 134.4 9.0 148 500-669 22-177 (361)
129 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.9E-15 121.1 13.3 156 181-345 23-230 (250)
130 2v9t_B SLIT homolog 2 protein 99.2 5.2E-11 1.8E-15 121.2 9.5 129 495-642 31-163 (220)
131 2je0_A Acidic leucine-rich nuc 99.2 2.1E-11 7.3E-16 115.8 5.8 125 495-640 16-149 (149)
132 2xot_A Amphoterin-induced prot 99.1 3.6E-11 1.2E-15 132.7 6.0 150 495-664 38-198 (361)
133 2v70_A SLIT-2, SLIT homolog 2 99.1 1E-10 3.6E-15 119.0 8.9 129 495-642 31-164 (220)
134 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-10 3.9E-15 114.2 7.3 127 495-642 18-151 (176)
135 1dce_A Protein (RAB geranylger 99.1 2E-10 6.7E-15 133.9 9.2 90 545-649 459-550 (567)
136 1w8a_A SLIT protein; signaling 99.0 2.4E-10 8.3E-15 113.5 8.2 122 500-641 12-136 (192)
137 1w8a_A SLIT protein; signaling 99.0 4.5E-10 1.5E-14 111.6 8.3 104 550-666 30-137 (192)
138 2wfh_A SLIT homolog 2 protein 99.0 9.5E-10 3.2E-14 109.2 10.1 98 568-669 17-116 (193)
139 2o6r_A Variable lymphocyte rec 99.0 8.6E-10 2.9E-14 108.0 9.7 121 500-641 11-134 (177)
140 2wfh_A SLIT homolog 2 protein 99.0 6.9E-10 2.3E-14 110.2 8.8 95 568-664 38-135 (193)
141 2chg_A Replication factor C sm 99.0 2.2E-09 7.5E-14 109.5 12.0 152 181-342 17-203 (226)
142 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 124.3 -6.4 111 509-641 38-150 (198)
143 1ds9_A Outer arm dynein; leuci 98.9 1.7E-11 5.7E-16 122.8 -6.6 110 541-666 40-151 (198)
144 2v1u_A Cell division control p 98.9 2.4E-08 8.1E-13 111.3 16.8 250 181-450 19-352 (387)
145 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 103.3 8.5 96 568-667 19-117 (174)
146 3g39_A Variable lymphocyte rec 98.8 4.7E-09 1.6E-13 101.8 8.4 96 568-667 16-114 (170)
147 1hqc_A RUVB; extended AAA-ATPa 98.8 7E-09 2.4E-13 112.6 9.5 162 181-346 12-214 (324)
148 2qby_B CDC6 homolog 3, cell di 98.8 1.2E-07 4E-12 105.6 19.4 249 181-451 20-341 (384)
149 2r9u_A Variable lymphocyte rec 98.8 6.7E-09 2.3E-13 101.0 7.5 80 549-641 33-115 (174)
150 2o6r_A Variable lymphocyte rec 98.8 1.3E-08 4.5E-13 99.5 9.7 95 568-666 14-111 (177)
151 1fnn_A CDC6P, cell division co 98.8 1.2E-07 4E-12 105.7 17.8 274 181-474 17-384 (389)
152 3sb4_A Hypothetical leucine ri 98.7 3E-08 1E-12 107.7 11.5 77 749-848 225-306 (329)
153 1sxj_B Activator 1 37 kDa subu 98.7 4E-08 1.4E-12 106.5 11.8 154 181-344 21-211 (323)
154 3sb4_A Hypothetical leucine ri 98.7 2.2E-08 7.5E-13 108.8 9.7 286 518-913 24-327 (329)
155 2qby_A CDC6 homolog 1, cell di 98.7 1E-07 3.5E-12 106.1 14.5 250 180-449 19-348 (386)
156 3g39_A Variable lymphocyte rec 98.7 2.4E-08 8.3E-13 96.7 7.3 73 568-641 37-112 (170)
157 1iqp_A RFCS; clamp loader, ext 98.6 1.2E-07 4.1E-12 102.9 12.1 154 181-344 25-213 (327)
158 1jr3_A DNA polymerase III subu 98.6 3.3E-07 1.1E-11 101.4 13.1 154 181-343 16-221 (373)
159 2ifg_A High affinity nerve gro 98.4 2.3E-07 7.8E-12 101.6 8.1 96 568-666 15-114 (347)
160 2chq_A Replication factor C sm 98.3 2.1E-06 7.1E-11 92.6 12.5 151 181-341 17-202 (319)
161 3bos_A Putative DNA replicatio 98.3 1.6E-06 5.3E-11 89.3 10.6 151 181-342 28-216 (242)
162 3pfi_A Holliday junction ATP-d 98.3 1.8E-06 6.3E-11 93.9 11.5 157 181-341 29-225 (338)
163 2ifg_A High affinity nerve gro 98.2 1.4E-06 4.7E-11 95.3 8.1 84 545-641 27-113 (347)
164 4fdw_A Leucine rich hypothetic 98.2 8.9E-05 3E-09 82.1 22.3 101 542-661 129-232 (401)
165 1jbk_A CLPB protein; beta barr 98.2 1.7E-06 5.7E-11 85.5 7.5 117 181-305 22-194 (195)
166 3pvs_A Replication-associated 98.1 9E-06 3.1E-10 91.0 12.0 152 181-340 26-212 (447)
167 1sxj_D Activator 1 41 kDa subu 98.1 7E-06 2.4E-10 89.9 10.8 152 181-342 37-234 (353)
168 4fs7_A Uncharacterized protein 98.1 0.00011 3.9E-09 81.4 19.8 126 512-662 64-192 (394)
169 3h4m_A Proteasome-activating n 98.1 1.3E-05 4.3E-10 84.9 11.1 155 181-340 17-228 (285)
170 4fdw_A Leucine rich hypothetic 98.1 1.2E-05 4.2E-10 89.1 11.1 242 513-804 130-379 (401)
171 3un9_A NLR family member X1; l 98.1 3.3E-07 1.1E-11 100.7 -1.5 158 497-667 73-251 (372)
172 1sxj_A Activator 1 95 kDa subu 98.0 9.5E-06 3.2E-10 93.3 9.9 158 181-345 39-255 (516)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.0 2.8E-05 9.7E-10 80.9 12.7 154 181-337 6-215 (262)
174 3eie_A Vacuolar protein sortin 98.0 4.3E-05 1.5E-09 82.1 14.0 159 181-343 18-228 (322)
175 3u61_B DNA polymerase accessor 98.0 1.2E-05 4.1E-10 86.8 9.2 157 181-345 26-219 (324)
176 1d2n_A N-ethylmaleimide-sensit 98.0 7.6E-05 2.6E-09 78.1 14.4 154 181-345 33-245 (272)
177 3te6_A Regulatory protein SIR3 98.0 3.4E-05 1.2E-09 81.4 11.6 162 182-346 21-283 (318)
178 3syl_A Protein CBBX; photosynt 97.9 2E-05 6.7E-10 84.4 9.6 129 182-310 32-218 (309)
179 3uk6_A RUVB-like 2; hexameric 97.9 5E-05 1.7E-09 83.6 12.6 150 181-339 44-299 (368)
180 3un9_A NLR family member X1; l 97.9 2E-06 6.7E-11 94.5 1.1 137 496-642 101-250 (372)
181 2qp9_X Vacuolar protein sortin 97.9 9.1E-05 3.1E-09 80.6 14.1 158 181-342 51-260 (355)
182 3n70_A Transport activator; si 97.8 9.3E-06 3.2E-10 75.9 4.0 92 182-276 2-115 (145)
183 3d8b_A Fidgetin-like protein 1 97.8 8.4E-05 2.9E-09 81.0 12.1 159 181-343 84-295 (357)
184 1sxj_E Activator 1 40 kDa subu 97.8 3.1E-05 1.1E-09 84.7 8.6 152 181-341 14-235 (354)
185 1l8q_A Chromosomal replication 97.8 2.9E-05 1E-09 83.7 8.2 122 207-336 37-201 (324)
186 2ra8_A Uncharacterized protein 97.8 2.5E-06 8.7E-11 92.8 -0.3 176 707-919 134-319 (362)
187 4fs7_A Uncharacterized protein 97.8 0.00024 8.3E-09 78.8 15.9 232 496-783 71-307 (394)
188 2z4s_A Chromosomal replication 97.8 3.8E-05 1.3E-09 86.1 9.3 127 207-339 130-302 (440)
189 1sxj_C Activator 1 40 kDa subu 97.8 0.00011 3.6E-09 79.8 12.6 149 181-339 25-208 (340)
190 2p65_A Hypothetical protein PF 97.8 3E-05 1E-09 75.9 7.3 46 181-231 22-67 (187)
191 1in4_A RUVB, holliday junction 97.8 9.8E-05 3.3E-09 79.7 11.4 156 181-340 25-220 (334)
192 3b9p_A CG5977-PA, isoform A; A 97.7 0.00023 7.8E-09 75.6 13.6 154 181-342 21-232 (297)
193 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00028 9.6E-09 75.5 14.0 159 181-343 12-223 (322)
194 1io0_A Tropomodulin; LRR prote 97.7 1.4E-05 4.7E-10 78.3 3.0 118 514-641 31-161 (185)
195 2ra8_A Uncharacterized protein 97.7 7.6E-06 2.6E-10 89.1 1.0 88 515-616 135-228 (362)
196 1a5t_A Delta prime, HOLB; zinc 97.7 0.00016 5.5E-09 78.0 11.5 142 187-342 8-204 (334)
197 1io0_A Tropomodulin; LRR prote 97.6 7.2E-06 2.5E-10 80.3 0.0 121 538-666 25-162 (185)
198 3co5_A Putative two-component 97.6 1.7E-05 6E-10 73.8 2.5 93 181-276 4-115 (143)
199 3vfd_A Spastin; ATPase, microt 97.6 0.00045 1.5E-08 76.3 14.1 158 181-342 115-325 (389)
200 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.5E-10 75.7 1.9 72 836-922 82-154 (176)
201 2zan_A Vacuolar protein sortin 97.6 0.00044 1.5E-08 77.6 13.8 158 181-342 134-344 (444)
202 2bjv_A PSP operon transcriptio 97.5 0.00015 5E-09 75.6 8.2 48 181-231 6-53 (265)
203 3ec2_A DNA replication protein 97.5 5.9E-05 2E-09 73.4 4.2 89 186-276 19-142 (180)
204 3cf0_A Transitional endoplasmi 97.5 0.00031 1E-08 74.6 9.9 130 181-310 15-200 (301)
205 4fcw_A Chaperone protein CLPB; 97.5 0.00032 1.1E-08 75.0 9.8 51 181-231 17-71 (311)
206 3rw6_A Nuclear RNA export fact 97.4 3E-05 1E-09 79.8 1.5 79 581-661 167-257 (267)
207 1ojl_A Transcriptional regulat 97.4 0.00021 7.3E-09 75.8 8.2 47 181-230 2-48 (304)
208 1ofh_A ATP-dependent HSL prote 97.4 0.00042 1.4E-08 74.0 10.5 127 181-307 15-213 (310)
209 3rw6_A Nuclear RNA export fact 97.4 0.00014 4.6E-09 74.9 5.8 88 541-638 162-258 (267)
210 3e4g_A ATP synthase subunit S, 97.4 6.4E-05 2.2E-09 71.5 2.6 91 773-898 61-154 (176)
211 2w58_A DNAI, primosome compone 97.4 6.6E-05 2.3E-09 74.6 2.8 87 189-276 37-158 (202)
212 4b4t_J 26S protease regulatory 97.3 0.0013 4.6E-08 71.1 12.8 151 181-336 148-354 (405)
213 4gt6_A Cell surface protein; l 97.3 0.008 2.7E-07 66.4 19.4 109 513-640 57-169 (394)
214 4b4t_L 26S protease subunit RP 97.3 0.0011 3.7E-08 73.0 11.9 152 180-336 180-387 (437)
215 2r44_A Uncharacterized protein 97.3 0.00056 1.9E-08 73.7 9.2 123 181-310 27-199 (331)
216 2r62_A Cell division protease 97.2 0.00025 8.6E-09 74.0 5.7 129 181-309 11-196 (268)
217 3hu3_A Transitional endoplasmi 97.2 0.00043 1.5E-08 78.2 7.5 130 181-310 204-386 (489)
218 3pxg_A Negative regulator of g 97.2 0.0025 8.5E-08 72.0 13.6 117 181-309 180-338 (468)
219 2kjq_A DNAA-related protein; s 97.2 0.00018 6.2E-09 67.2 3.2 69 208-276 37-124 (149)
220 2gno_A DNA polymerase III, gam 97.1 0.00098 3.4E-08 70.4 9.0 117 185-309 1-152 (305)
221 1qvr_A CLPB protein; coiled co 97.1 0.00094 3.2E-08 81.7 10.0 120 181-308 170-344 (854)
222 3pxi_A Negative regulator of g 97.1 0.00064 2.2E-08 82.2 8.3 129 181-309 491-675 (758)
223 4b4t_H 26S protease regulatory 97.0 0.0022 7.4E-08 70.4 10.8 150 181-335 209-414 (467)
224 1lv7_A FTSH; alpha/beta domain 97.0 0.0011 3.9E-08 68.4 8.2 129 181-309 12-195 (257)
225 4gt6_A Cell surface protein; l 97.0 0.0024 8.3E-08 70.6 11.3 125 498-641 66-192 (394)
226 4b4t_I 26S protease regulatory 97.0 0.0024 8.3E-08 69.3 10.7 150 181-335 182-387 (437)
227 4b4t_M 26S protease regulatory 97.0 0.00077 2.6E-08 74.1 6.6 150 181-335 181-386 (434)
228 2ce7_A Cell division protein F 97.0 0.0016 5.6E-08 72.8 9.3 151 181-336 16-221 (476)
229 4b4t_K 26S protease regulatory 97.0 0.0027 9.4E-08 69.7 10.9 130 180-309 171-357 (428)
230 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0017 5.8E-08 78.6 9.7 123 181-309 186-362 (758)
231 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0027 9.2E-08 76.8 9.8 97 180-276 457-607 (758)
232 3t15_A Ribulose bisphosphate c 96.7 0.0025 8.4E-08 67.1 8.0 27 206-232 35-61 (293)
233 3pxi_A Negative regulator of g 96.6 0.0089 3E-07 72.1 12.8 117 181-309 180-338 (758)
234 3m6a_A ATP-dependent protease 96.5 0.0028 9.6E-08 72.9 7.3 124 181-309 81-266 (543)
235 1qvr_A CLPB protein; coiled co 96.5 0.0057 1.9E-07 74.8 10.1 96 181-276 558-710 (854)
236 3cf2_A TER ATPase, transitiona 96.5 0.0084 2.9E-07 71.1 10.7 151 181-336 204-407 (806)
237 2x8a_A Nuclear valosin-contain 96.5 0.0099 3.4E-07 61.7 10.2 128 181-309 10-191 (274)
238 1um8_A ATP-dependent CLP prote 96.4 0.011 3.7E-07 64.8 10.4 25 207-231 72-96 (376)
239 1ixz_A ATP-dependent metallopr 96.3 0.0072 2.5E-07 62.1 8.1 129 181-309 16-199 (254)
240 2qgz_A Helicase loader, putati 96.3 0.0018 6.2E-08 68.6 3.5 44 187-232 134-177 (308)
241 1g8p_A Magnesium-chelatase 38 96.3 0.0052 1.8E-07 66.6 7.1 46 181-231 24-69 (350)
242 4h09_A Hypothetical leucine ri 96.2 0.028 9.6E-07 61.5 12.4 13 543-555 63-75 (379)
243 1tue_A Replication protein E1; 96.1 0.0011 3.8E-08 64.1 0.6 55 190-248 45-114 (212)
244 2dhr_A FTSH; AAA+ protein, hex 96.1 0.018 6.3E-07 64.7 10.2 129 181-309 31-214 (499)
245 1iy2_A ATP-dependent metallopr 95.9 0.011 3.9E-07 61.6 7.0 129 181-309 40-223 (278)
246 4h09_A Hypothetical leucine ri 95.8 0.055 1.9E-06 59.2 12.4 80 545-641 42-123 (379)
247 2c9o_A RUVB-like 1; hexameric 95.7 0.0062 2.1E-07 68.6 4.6 52 181-232 37-88 (456)
248 1u0j_A DNA replication protein 95.6 0.049 1.7E-06 55.3 10.3 113 191-308 91-250 (267)
249 1ypw_A Transitional endoplasmi 95.6 0.021 7.3E-07 68.8 8.8 129 181-309 204-385 (806)
250 3fwy_A Light-independent proto 95.0 0.013 4.3E-07 62.0 3.9 37 205-242 46-82 (314)
251 2orw_A Thymidine kinase; TMTK, 95.0 0.03 1E-06 54.1 6.0 22 208-229 4-25 (184)
252 1rz3_A Hypothetical protein rb 94.9 0.031 1.1E-06 54.9 6.0 45 186-232 3-47 (201)
253 3k1j_A LON protease, ATP-depen 94.8 0.035 1.2E-06 64.9 7.0 43 181-230 41-83 (604)
254 2xxa_A Signal recognition part 94.4 0.039 1.3E-06 61.0 6.0 42 206-247 99-140 (433)
255 3end_A Light-independent proto 94.3 0.024 8.4E-07 60.0 3.9 37 205-242 39-75 (307)
256 3c8u_A Fructokinase; YP_612366 94.2 0.035 1.2E-06 54.9 4.6 55 189-246 7-61 (208)
257 1jr3_D DNA polymerase III, del 94.1 0.22 7.4E-06 53.5 11.0 130 207-341 18-183 (343)
258 3lw7_A Adenylate kinase relate 94.1 0.024 8.2E-07 54.2 3.0 19 209-227 3-21 (179)
259 1zp6_A Hypothetical protein AT 94.0 0.028 9.6E-07 54.6 3.5 24 207-230 9-32 (191)
260 2px0_A Flagellar biosynthesis 94.0 0.036 1.2E-06 58.1 4.3 41 207-247 105-145 (296)
261 1gvn_B Zeta; postsegregational 93.9 0.047 1.6E-06 56.9 5.1 43 189-231 15-57 (287)
262 3f9v_A Minichromosome maintena 93.9 0.028 9.5E-07 65.2 3.5 68 209-276 329-443 (595)
263 3tqc_A Pantothenate kinase; bi 93.7 0.065 2.2E-06 56.4 5.8 48 184-232 70-117 (321)
264 1qhx_A CPT, protein (chloramph 93.7 0.029 1E-06 53.8 2.9 25 208-232 4-28 (178)
265 3kb2_A SPBC2 prophage-derived 93.7 0.028 9.7E-07 53.5 2.7 25 208-232 2-26 (173)
266 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.044 1.5E-06 61.7 4.6 44 181-231 22-65 (500)
267 1yrb_A ATP(GTP)binding protein 93.6 0.049 1.7E-06 56.0 4.6 40 205-246 12-51 (262)
268 2ga8_A Hypothetical 39.9 kDa p 93.6 0.061 2.1E-06 57.0 5.2 48 184-232 2-49 (359)
269 1ex7_A Guanylate kinase; subst 93.5 0.036 1.2E-06 53.4 3.1 24 208-231 2-25 (186)
270 1ly1_A Polynucleotide kinase; 93.5 0.037 1.3E-06 53.1 3.2 22 208-229 3-24 (181)
271 1kgd_A CASK, peripheral plasma 93.5 0.033 1.1E-06 53.6 2.8 23 208-230 6-28 (180)
272 3vaa_A Shikimate kinase, SK; s 93.4 0.031 1.1E-06 54.8 2.6 25 207-231 25-49 (199)
273 1odf_A YGR205W, hypothetical 3 93.4 0.066 2.3E-06 55.8 5.0 29 205-233 29-57 (290)
274 1kag_A SKI, shikimate kinase I 93.3 0.032 1.1E-06 53.2 2.4 25 208-232 5-29 (173)
275 3ice_A Transcription terminati 93.3 0.042 1.4E-06 58.5 3.3 37 191-231 162-198 (422)
276 2p5t_B PEZT; postsegregational 93.2 0.054 1.9E-06 55.4 4.1 43 189-231 14-56 (253)
277 1cp2_A CP2, nitrogenase iron p 93.2 0.052 1.8E-06 56.1 4.1 34 208-242 2-35 (269)
278 4gp7_A Metallophosphoesterase; 93.2 0.045 1.5E-06 52.1 3.2 23 207-229 9-31 (171)
279 3trf_A Shikimate kinase, SK; a 93.1 0.036 1.2E-06 53.6 2.4 24 208-231 6-29 (185)
280 3uie_A Adenylyl-sulfate kinase 93.1 0.045 1.6E-06 53.7 3.2 27 206-232 24-50 (200)
281 1knq_A Gluconate kinase; ALFA/ 93.1 0.05 1.7E-06 52.0 3.3 25 207-231 8-32 (175)
282 2afh_E Nitrogenase iron protei 93.0 0.056 1.9E-06 56.5 4.0 35 207-242 2-36 (289)
283 2bdt_A BH3686; alpha-beta prot 93.0 0.051 1.7E-06 52.7 3.3 22 208-229 3-24 (189)
284 1nks_A Adenylate kinase; therm 93.0 0.048 1.6E-06 53.0 3.1 25 208-232 2-26 (194)
285 1zuh_A Shikimate kinase; alpha 93.0 0.041 1.4E-06 52.2 2.5 27 206-232 6-32 (168)
286 1pgv_A TMD-1, tropomodulin TMD 92.9 0.058 2E-06 52.2 3.5 69 542-617 63-136 (197)
287 3rfe_A Platelet glycoprotein I 92.9 0.11 3.7E-06 46.8 5.1 49 568-618 15-66 (130)
288 3cf2_A TER ATPase, transitiona 92.9 0.15 5.1E-06 60.6 7.6 128 180-309 476-661 (806)
289 3hws_A ATP-dependent CLP prote 92.9 0.061 2.1E-06 58.4 4.1 50 182-231 16-75 (363)
290 1zu4_A FTSY; GTPase, signal re 92.8 0.065 2.2E-06 56.7 4.0 40 206-246 104-143 (320)
291 1ye8_A Protein THEP1, hypothet 92.8 0.054 1.9E-06 51.9 3.1 24 209-232 2-25 (178)
292 3tr0_A Guanylate kinase, GMP k 92.8 0.053 1.8E-06 53.3 3.1 24 208-231 8-31 (205)
293 2ze6_A Isopentenyl transferase 92.7 0.051 1.7E-06 55.5 3.0 25 208-232 2-26 (253)
294 2qt1_A Nicotinamide riboside k 92.7 0.066 2.3E-06 52.8 3.8 26 206-231 20-45 (207)
295 3t61_A Gluconokinase; PSI-biol 92.7 0.041 1.4E-06 54.1 2.2 24 208-231 19-42 (202)
296 3a00_A Guanylate kinase, GMP k 92.7 0.041 1.4E-06 53.3 2.1 24 208-231 2-25 (186)
297 4eun_A Thermoresistant glucoki 92.7 0.056 1.9E-06 53.0 3.1 25 207-231 29-53 (200)
298 2rhm_A Putative kinase; P-loop 92.6 0.069 2.4E-06 51.8 3.7 25 207-231 5-29 (193)
299 1uf9_A TT1252 protein; P-loop, 92.6 0.066 2.3E-06 52.5 3.6 25 206-230 7-31 (203)
300 2if2_A Dephospho-COA kinase; a 92.6 0.056 1.9E-06 53.2 3.0 21 209-229 3-23 (204)
301 3asz_A Uridine kinase; cytidin 92.6 0.066 2.3E-06 52.9 3.5 27 206-232 5-31 (211)
302 3ea0_A ATPase, para family; al 92.6 0.084 2.9E-06 53.6 4.4 37 206-242 3-40 (245)
303 1xjc_A MOBB protein homolog; s 92.5 0.073 2.5E-06 50.2 3.5 29 206-234 3-31 (169)
304 1kht_A Adenylate kinase; phosp 92.5 0.057 1.9E-06 52.4 2.9 25 208-232 4-28 (192)
305 3tau_A Guanylate kinase, GMP k 92.5 0.053 1.8E-06 53.6 2.7 25 207-231 8-32 (208)
306 3iij_A Coilin-interacting nucl 92.5 0.042 1.4E-06 52.8 1.9 25 207-231 11-35 (180)
307 2jaq_A Deoxyguanosine kinase; 92.5 0.058 2E-06 52.9 2.9 24 209-232 2-25 (205)
308 1jjv_A Dephospho-COA kinase; P 92.4 0.069 2.4E-06 52.6 3.4 22 208-229 3-24 (206)
309 2j37_W Signal recognition part 92.4 0.14 4.7E-06 57.6 6.1 43 205-248 99-141 (504)
310 1ukz_A Uridylate kinase; trans 92.4 0.069 2.4E-06 52.4 3.4 26 206-231 14-39 (203)
311 2yvu_A Probable adenylyl-sulfa 92.3 0.058 2E-06 52.2 2.7 28 206-233 12-39 (186)
312 2j41_A Guanylate kinase; GMP, 92.2 0.064 2.2E-06 52.8 2.9 24 208-231 7-30 (207)
313 1y63_A LMAJ004144AAA protein; 92.2 0.066 2.3E-06 51.7 2.9 24 207-230 10-33 (184)
314 1via_A Shikimate kinase; struc 92.2 0.053 1.8E-06 51.8 2.2 24 209-232 6-29 (175)
315 3p32_A Probable GTPase RV1496/ 92.2 0.18 6.1E-06 54.4 6.6 49 190-242 65-113 (355)
316 2qor_A Guanylate kinase; phosp 92.2 0.049 1.7E-06 53.6 2.0 26 206-231 11-36 (204)
317 1cke_A CK, MSSA, protein (cyti 92.1 0.067 2.3E-06 53.6 2.9 24 208-231 6-29 (227)
318 1htw_A HI0065; nucleotide-bind 92.1 0.083 2.8E-06 49.4 3.3 25 207-231 33-57 (158)
319 1tev_A UMP-CMP kinase; ploop, 92.1 0.07 2.4E-06 51.9 3.0 24 208-231 4-27 (196)
320 1lvg_A Guanylate kinase, GMP k 92.1 0.055 1.9E-06 52.9 2.2 24 208-231 5-28 (198)
321 1rj9_A FTSY, signal recognitio 92.0 0.081 2.8E-06 55.5 3.5 35 207-242 102-136 (304)
322 3cm0_A Adenylate kinase; ATP-b 92.0 0.078 2.7E-06 51.1 3.2 24 208-231 5-28 (186)
323 1pgv_A TMD-1, tropomodulin TMD 92.0 0.064 2.2E-06 51.9 2.5 95 539-641 31-136 (197)
324 3aez_A Pantothenate kinase; tr 91.8 0.09 3.1E-06 55.4 3.6 27 206-232 89-115 (312)
325 2bwj_A Adenylate kinase 5; pho 91.8 0.076 2.6E-06 51.9 2.9 24 208-231 13-36 (199)
326 3upu_A ATP-dependent DNA helic 91.8 0.17 5.8E-06 56.8 6.1 22 209-230 47-68 (459)
327 1qf9_A UMP/CMP kinase, protein 91.8 0.083 2.8E-06 51.2 3.1 25 207-231 6-30 (194)
328 1uj2_A Uridine-cytidine kinase 91.8 0.084 2.9E-06 53.9 3.3 27 206-232 21-47 (252)
329 3fkq_A NTRC-like two-domain pr 91.8 0.17 5.9E-06 54.9 6.0 38 204-242 140-178 (373)
330 2bbw_A Adenylate kinase 4, AK4 91.8 0.08 2.7E-06 53.8 3.1 25 207-231 27-51 (246)
331 2c95_A Adenylate kinase 1; tra 91.8 0.077 2.6E-06 51.6 2.9 25 207-231 9-33 (196)
332 1ny5_A Transcriptional regulat 91.7 0.45 1.5E-05 51.9 9.3 46 182-230 138-183 (387)
333 2iyv_A Shikimate kinase, SK; t 91.7 0.062 2.1E-06 51.8 2.1 24 209-232 4-27 (184)
334 2r8r_A Sensor protein; KDPD, P 91.7 0.11 3.7E-06 51.2 3.8 34 208-242 7-40 (228)
335 2pt5_A Shikimate kinase, SK; a 91.7 0.081 2.8E-06 50.0 2.9 24 209-232 2-25 (168)
336 3dzd_A Transcriptional regulat 91.7 0.25 8.6E-06 53.4 7.1 47 181-230 129-175 (368)
337 1znw_A Guanylate kinase, GMP k 91.7 0.085 2.9E-06 52.0 3.1 24 208-231 21-44 (207)
338 2grj_A Dephospho-COA kinase; T 91.7 0.1 3.6E-06 50.5 3.6 25 206-230 11-35 (192)
339 2plr_A DTMP kinase, probable t 91.6 0.083 2.8E-06 52.2 3.0 25 208-232 5-29 (213)
340 3ney_A 55 kDa erythrocyte memb 91.6 0.082 2.8E-06 51.3 2.8 24 207-230 19-42 (197)
341 3l0o_A Transcription terminati 91.6 0.098 3.4E-06 55.6 3.5 38 190-231 162-199 (427)
342 3a4m_A L-seryl-tRNA(SEC) kinas 91.6 0.091 3.1E-06 53.9 3.3 25 207-231 4-28 (260)
343 3tlx_A Adenylate kinase 2; str 91.6 0.13 4.5E-06 52.1 4.4 26 206-231 28-53 (243)
344 4dzz_A Plasmid partitioning pr 91.5 0.098 3.4E-06 51.4 3.4 34 208-242 2-36 (206)
345 1sq5_A Pantothenate kinase; P- 91.5 0.13 4.5E-06 54.2 4.5 27 206-232 79-105 (308)
346 1ls1_A Signal recognition part 91.4 0.11 3.8E-06 54.2 3.8 35 207-242 98-132 (295)
347 2cdn_A Adenylate kinase; phosp 91.4 0.09 3.1E-06 51.5 2.9 25 207-231 20-44 (201)
348 3rfe_A Platelet glycoprotein I 91.4 0.17 5.9E-06 45.4 4.5 53 587-642 11-66 (130)
349 2pbr_A DTMP kinase, thymidylat 91.4 0.091 3.1E-06 51.0 2.9 23 209-231 2-24 (195)
350 1e6c_A Shikimate kinase; phosp 91.4 0.076 2.6E-06 50.5 2.3 23 209-231 4-26 (173)
351 2jeo_A Uridine-cytidine kinase 91.4 0.11 3.6E-06 52.9 3.5 25 207-231 25-49 (245)
352 3io3_A DEHA2D07832P; chaperone 91.4 0.1 3.5E-06 55.8 3.5 37 206-242 17-54 (348)
353 2vli_A Antibiotic resistance p 91.4 0.068 2.3E-06 51.4 2.0 25 208-232 6-30 (183)
354 1vma_A Cell division protein F 91.3 0.16 5.3E-06 53.3 4.7 36 206-242 103-138 (306)
355 4e22_A Cytidylate kinase; P-lo 91.2 0.099 3.4E-06 53.4 3.1 24 208-231 28-51 (252)
356 1z6g_A Guanylate kinase; struc 91.1 0.087 3E-06 52.4 2.5 24 208-231 24-47 (218)
357 3umf_A Adenylate kinase; rossm 91.1 0.12 4E-06 51.2 3.3 28 205-232 27-54 (217)
358 2pez_A Bifunctional 3'-phospho 91.0 0.12 4E-06 49.6 3.3 25 207-231 5-29 (179)
359 1cr0_A DNA primase/helicase; R 91.0 0.13 4.4E-06 54.0 3.8 32 208-239 36-67 (296)
360 2v3c_C SRP54, signal recogniti 91.0 0.065 2.2E-06 59.2 1.5 40 207-247 99-138 (432)
361 2f6r_A COA synthase, bifunctio 91.0 0.13 4.5E-06 53.4 3.8 23 206-228 74-96 (281)
362 2wsm_A Hydrogenase expression/ 90.9 0.24 8.3E-06 49.1 5.6 43 185-232 13-55 (221)
363 4a74_A DNA repair and recombin 90.9 0.12 4.3E-06 51.6 3.4 24 207-230 25-48 (231)
364 3e70_C DPA, signal recognition 90.9 0.28 9.7E-06 51.9 6.3 40 206-246 128-167 (328)
365 1s96_A Guanylate kinase, GMP k 90.9 0.12 4E-06 51.4 3.1 25 207-231 16-40 (219)
366 3kjh_A CO dehydrogenase/acetyl 90.8 0.11 3.7E-06 52.9 3.0 32 210-242 3-34 (254)
367 1zd8_A GTP:AMP phosphotransfer 90.8 0.11 3.7E-06 52.1 2.9 25 207-231 7-31 (227)
368 1sky_E F1-ATPase, F1-ATP synth 90.8 0.13 4.4E-06 56.8 3.6 22 209-230 153-174 (473)
369 2cvh_A DNA repair and recombin 90.8 0.14 4.8E-06 50.8 3.7 23 207-229 20-42 (220)
370 2wwf_A Thymidilate kinase, put 90.7 0.12 4E-06 51.1 3.0 26 207-232 10-35 (212)
371 3fb4_A Adenylate kinase; psych 90.7 0.11 3.7E-06 51.6 2.8 23 209-231 2-24 (216)
372 2i3b_A HCR-ntpase, human cance 90.7 0.1 3.5E-06 50.4 2.5 24 209-232 3-26 (189)
373 2og2_A Putative signal recogni 90.7 0.15 5.1E-06 54.6 3.9 35 206-241 156-190 (359)
374 2hf9_A Probable hydrogenase ni 90.7 0.19 6.6E-06 50.0 4.7 39 206-246 37-75 (226)
375 3dl0_A Adenylate kinase; phosp 90.6 0.11 3.9E-06 51.4 2.8 23 209-231 2-24 (216)
376 1nn5_A Similar to deoxythymidy 90.6 0.12 3.9E-06 51.2 2.9 25 208-232 10-34 (215)
377 2z0h_A DTMP kinase, thymidylat 90.6 0.12 4.1E-06 50.3 2.9 23 209-231 2-24 (197)
378 2pcj_A ABC transporter, lipopr 90.5 0.13 4.6E-06 51.2 3.1 26 208-233 31-56 (224)
379 2v54_A DTMP kinase, thymidylat 90.4 0.13 4.4E-06 50.4 3.0 24 208-231 5-28 (204)
380 3b9q_A Chloroplast SRP recepto 90.4 0.17 6E-06 52.9 4.1 35 206-241 99-133 (302)
381 2ehv_A Hypothetical protein PH 90.4 0.13 4.4E-06 52.3 3.1 22 208-229 31-52 (251)
382 1aky_A Adenylate kinase; ATP:A 90.4 0.12 4.1E-06 51.5 2.8 25 208-232 5-29 (220)
383 1m7g_A Adenylylsulfate kinase; 90.3 0.14 4.8E-06 50.6 3.2 26 207-232 25-50 (211)
384 3d3q_A TRNA delta(2)-isopenten 90.3 0.13 4.5E-06 54.3 3.1 34 208-246 8-41 (340)
385 2onk_A Molybdate/tungstate ABC 90.3 0.13 4.3E-06 52.0 2.8 26 208-233 25-50 (240)
386 2f1r_A Molybdopterin-guanine d 90.3 0.084 2.9E-06 50.1 1.4 39 208-246 3-41 (171)
387 3tif_A Uncharacterized ABC tra 90.3 0.14 4.7E-06 51.6 3.0 27 208-234 32-58 (235)
388 1gtv_A TMK, thymidylate kinase 90.2 0.085 2.9E-06 52.2 1.4 24 209-232 2-25 (214)
389 3b85_A Phosphate starvation-in 90.1 0.12 4.2E-06 50.8 2.5 23 208-230 23-45 (208)
390 2ffh_A Protein (FFH); SRP54, s 90.1 0.17 6E-06 55.4 3.9 39 207-246 98-136 (425)
391 3zq6_A Putative arsenical pump 90.1 0.2 6.8E-06 53.2 4.3 35 207-242 14-48 (324)
392 1vht_A Dephospho-COA kinase; s 90.1 0.15 5.2E-06 50.6 3.2 23 207-229 4-26 (218)
393 3nwj_A ATSK2; P loop, shikimat 90.0 0.12 4.1E-06 52.4 2.4 25 208-232 49-73 (250)
394 1np6_A Molybdopterin-guanine d 90.0 0.21 7.1E-06 47.4 3.9 26 207-232 6-31 (174)
395 3ug7_A Arsenical pump-driving 90.0 0.21 7.2E-06 53.6 4.4 36 206-242 25-60 (349)
396 3lnc_A Guanylate kinase, GMP k 89.9 0.11 3.7E-06 52.3 2.0 23 208-230 28-51 (231)
397 3dm5_A SRP54, signal recogniti 89.9 0.21 7.2E-06 54.8 4.4 42 206-248 99-140 (443)
398 3ake_A Cytidylate kinase; CMP 89.9 0.15 5.1E-06 50.1 2.9 24 209-232 4-27 (208)
399 3jvv_A Twitching mobility prot 89.8 0.21 7.2E-06 53.5 4.3 95 208-309 124-218 (356)
400 4akg_A Glutathione S-transfera 89.8 1.2 4.1E-05 60.1 12.1 101 208-309 1268-1431(2695)
401 2eyu_A Twitching motility prot 89.7 0.25 8.5E-06 50.5 4.6 40 207-246 25-64 (261)
402 2cbz_A Multidrug resistance-as 89.7 0.16 5.5E-06 51.1 3.0 26 208-233 32-57 (237)
403 3gfo_A Cobalt import ATP-bindi 89.7 0.16 5.4E-06 52.4 3.0 26 208-233 35-60 (275)
404 1b0u_A Histidine permease; ABC 89.6 0.16 5.5E-06 52.0 3.0 26 208-233 33-58 (262)
405 3a8t_A Adenylate isopentenyltr 89.6 0.19 6.4E-06 52.9 3.5 26 207-232 40-65 (339)
406 3kl4_A SRP54, signal recogniti 89.6 0.23 7.7E-06 54.6 4.3 40 206-246 96-135 (433)
407 1zak_A Adenylate kinase; ATP:A 89.5 0.15 5.1E-06 50.9 2.6 25 208-232 6-30 (222)
408 3be4_A Adenylate kinase; malar 89.5 0.14 4.7E-06 50.9 2.3 24 208-231 6-29 (217)
409 1ji0_A ABC transporter; ATP bi 89.5 0.17 5.9E-06 51.1 3.0 26 208-233 33-58 (240)
410 1mv5_A LMRA, multidrug resista 89.4 0.18 6.3E-06 50.9 3.3 27 208-234 29-55 (243)
411 3crm_A TRNA delta(2)-isopenten 89.4 0.17 6E-06 53.0 3.1 25 208-232 6-30 (323)
412 1sgw_A Putative ABC transporte 89.4 0.15 5.1E-06 50.4 2.4 26 208-233 36-61 (214)
413 4g1u_C Hemin import ATP-bindin 89.4 0.17 5.9E-06 51.9 3.0 27 208-234 38-64 (266)
414 2olj_A Amino acid ABC transpor 89.4 0.17 5.9E-06 51.7 3.0 26 208-233 51-76 (263)
415 3ez2_A Plasmid partition prote 89.4 0.2 6.9E-06 55.0 3.8 38 205-242 106-149 (398)
416 1g6h_A High-affinity branched- 89.4 0.17 6E-06 51.6 3.0 26 208-233 34-59 (257)
417 3r20_A Cytidylate kinase; stru 89.3 0.17 5.7E-06 50.6 2.8 25 208-232 10-34 (233)
418 1e4v_A Adenylate kinase; trans 89.3 0.18 6.1E-06 49.9 3.0 23 209-231 2-24 (214)
419 3iqw_A Tail-anchored protein t 89.3 0.22 7.6E-06 52.9 3.9 36 206-242 15-50 (334)
420 1oix_A RAS-related protein RAB 89.3 0.19 6.3E-06 48.7 3.1 26 207-232 29-54 (191)
421 1g41_A Heat shock protein HSLU 89.3 0.19 6.6E-06 55.2 3.5 52 181-232 15-75 (444)
422 3bfv_A CAPA1, CAPB2, membrane 89.3 0.34 1.2E-05 49.8 5.3 41 205-246 80-121 (271)
423 2d2e_A SUFC protein; ABC-ATPas 89.2 0.18 6.3E-06 51.2 3.1 23 208-230 30-52 (250)
424 2oze_A ORF delta'; para, walke 89.2 0.19 6.5E-06 52.7 3.3 34 208-242 35-71 (298)
425 3exa_A TRNA delta(2)-isopenten 89.2 0.2 6.7E-06 52.1 3.3 25 208-232 4-28 (322)
426 1a7j_A Phosphoribulokinase; tr 89.2 0.11 3.9E-06 54.1 1.5 40 207-246 5-44 (290)
427 2pze_A Cystic fibrosis transme 89.2 0.19 6.4E-06 50.4 3.0 26 208-233 35-60 (229)
428 2vhj_A Ntpase P4, P4; non- hyd 89.1 0.19 6.7E-06 52.3 3.2 23 208-230 124-146 (331)
429 2xb4_A Adenylate kinase; ATP-b 89.1 0.17 5.9E-06 50.4 2.8 23 209-231 2-24 (223)
430 1vpl_A ABC transporter, ATP-bi 89.1 0.19 6.4E-06 51.2 3.0 26 208-233 42-67 (256)
431 3k9g_A PF-32 protein; ssgcid, 89.1 0.22 7.6E-06 51.2 3.7 35 206-242 26-61 (267)
432 2ff7_A Alpha-hemolysin translo 89.1 0.19 6.5E-06 50.9 3.0 26 208-233 36-61 (247)
433 2zu0_C Probable ATP-dependent 89.0 0.19 6.7E-06 51.5 3.1 23 208-230 47-69 (267)
434 1g5t_A COB(I)alamin adenosyltr 89.0 0.42 1.4E-05 45.9 5.2 42 236-277 119-163 (196)
435 2yhs_A FTSY, cell division pro 88.8 0.25 8.4E-06 54.9 3.9 36 206-242 292-327 (503)
436 2qi9_C Vitamin B12 import ATP- 88.8 0.2 6.9E-06 50.7 3.0 27 208-234 27-53 (249)
437 2wji_A Ferrous iron transport 88.8 0.24 8.4E-06 46.4 3.5 23 208-230 4-26 (165)
438 3e1s_A Exodeoxyribonuclease V, 88.8 0.29 9.9E-06 56.3 4.7 23 208-230 205-227 (574)
439 1wcv_1 SOJ, segregation protei 88.8 0.15 5.3E-06 52.1 2.1 36 206-242 5-41 (257)
440 2w0m_A SSO2452; RECA, SSPF, un 88.8 0.25 8.4E-06 49.5 3.7 25 208-232 24-48 (235)
441 2ghi_A Transport protein; mult 88.7 0.21 7E-06 51.1 3.0 25 208-232 47-71 (260)
442 1byi_A Dethiobiotin synthase; 88.7 0.28 9.5E-06 48.8 4.0 35 208-244 2-37 (224)
443 2ixe_A Antigen peptide transpo 88.6 0.21 7.1E-06 51.4 3.0 26 208-233 46-71 (271)
444 2ihy_A ABC transporter, ATP-bi 88.6 0.21 7.1E-06 51.6 3.0 27 208-234 48-74 (279)
445 2yz2_A Putative ABC transporte 88.6 0.21 7.3E-06 51.2 3.0 26 208-233 34-59 (266)
446 2nq2_C Hypothetical ABC transp 88.5 0.21 7.3E-06 50.8 3.0 25 208-232 32-56 (253)
447 2dyk_A GTP-binding protein; GT 88.5 0.25 8.4E-06 45.9 3.2 24 208-231 2-25 (161)
448 2zej_A Dardarin, leucine-rich 88.5 0.21 7.2E-06 47.9 2.8 22 209-230 4-25 (184)
449 1ak2_A Adenylate kinase isoenz 88.4 0.21 7E-06 50.3 2.8 25 208-232 17-41 (233)
450 1j8m_F SRP54, signal recogniti 88.4 0.25 8.6E-06 51.5 3.5 39 207-246 98-136 (297)
451 2qmh_A HPR kinase/phosphorylas 88.4 0.26 8.9E-06 47.4 3.2 24 208-231 35-58 (205)
452 2woj_A ATPase GET3; tail-ancho 88.3 0.27 9.2E-06 52.8 3.8 40 207-246 18-58 (354)
453 3sr0_A Adenylate kinase; phosp 88.3 0.21 7.3E-06 48.9 2.7 24 209-232 2-25 (206)
454 1n0w_A DNA repair protein RAD5 88.3 0.23 7.9E-06 50.1 3.1 23 208-230 25-47 (243)
455 2f9l_A RAB11B, member RAS onco 88.1 0.24 8.2E-06 48.2 3.0 25 207-231 5-29 (199)
456 3foz_A TRNA delta(2)-isopenten 88.1 0.24 8.2E-06 51.3 3.0 27 206-232 9-35 (316)
457 3pg5_A Uncharacterized protein 88.1 0.18 6.1E-06 54.5 2.2 34 208-242 2-36 (361)
458 1ltq_A Polynucleotide kinase; 88.0 0.25 8.4E-06 51.9 3.2 23 208-230 3-25 (301)
459 2vp4_A Deoxynucleoside kinase; 87.9 0.22 7.6E-06 49.9 2.6 25 206-230 19-43 (230)
460 3cwq_A Para family chromosome 87.9 0.27 9.4E-06 48.3 3.3 32 209-242 2-34 (209)
461 2v9p_A Replication protein E1; 87.8 0.25 8.6E-06 51.5 3.0 25 207-231 126-150 (305)
462 3cio_A ETK, tyrosine-protein k 87.8 0.31 1E-05 51.0 3.7 37 205-242 102-139 (299)
463 2p67_A LAO/AO transport system 87.8 0.7 2.4E-05 49.3 6.6 40 206-246 55-94 (341)
464 3q9l_A Septum site-determining 87.8 0.31 1.1E-05 49.7 3.7 34 208-242 3-37 (260)
465 1nlf_A Regulatory protein REPA 87.6 0.27 9.3E-06 50.9 3.2 24 208-231 31-54 (279)
466 2wjg_A FEOB, ferrous iron tran 87.5 0.36 1.2E-05 46.3 3.7 24 207-230 7-30 (188)
467 2xj4_A MIPZ; replication, cell 87.4 0.3 1E-05 50.8 3.4 34 208-242 5-39 (286)
468 2pjz_A Hypothetical protein ST 87.4 0.28 9.5E-06 50.2 3.0 24 208-231 31-54 (263)
469 3zvl_A Bifunctional polynucleo 87.4 0.28 9.5E-06 54.1 3.3 26 206-231 257-282 (416)
470 1svm_A Large T antigen; AAA+ f 87.4 0.42 1.4E-05 51.5 4.6 25 206-230 168-192 (377)
471 3sop_A Neuronal-specific septi 87.4 0.27 9.4E-06 50.5 3.0 26 209-234 4-29 (270)
472 2ce2_X GTPase HRAS; signaling 87.3 0.28 9.7E-06 45.6 2.9 22 209-230 5-26 (166)
473 2www_A Methylmalonic aciduria 87.2 0.41 1.4E-05 51.3 4.4 40 206-246 73-112 (349)
474 1q3t_A Cytidylate kinase; nucl 87.1 0.28 9.5E-06 49.4 2.9 26 206-231 15-40 (236)
475 1g3q_A MIND ATPase, cell divis 87.1 0.37 1.3E-05 48.3 3.8 34 208-242 3-37 (237)
476 1ypw_A Transitional endoplasmi 87.0 0.15 5.1E-06 61.5 0.8 53 180-232 476-536 (806)
477 2zts_A Putative uncharacterize 87.0 0.29 1E-05 49.6 3.0 36 207-242 30-65 (251)
478 2woo_A ATPase GET3; tail-ancho 87.0 0.35 1.2E-05 51.4 3.6 35 207-242 19-53 (329)
479 4eaq_A DTMP kinase, thymidylat 86.9 0.3 1E-05 48.8 2.9 26 207-232 26-51 (229)
480 3la6_A Tyrosine-protein kinase 86.9 0.56 1.9E-05 48.6 5.1 41 205-246 90-131 (286)
481 2nzj_A GTP-binding protein REM 86.8 0.32 1.1E-05 45.8 3.0 25 207-231 4-28 (175)
482 2bbs_A Cystic fibrosis transme 86.8 0.32 1.1E-05 50.4 3.1 26 208-233 65-90 (290)
483 3lxx_A GTPase IMAP family memb 86.7 0.68 2.3E-05 46.5 5.5 27 206-232 28-54 (239)
484 3ez9_A Para; DNA binding, wing 86.7 0.24 8.1E-06 54.5 2.2 38 205-242 109-152 (403)
485 3nh6_A ATP-binding cassette SU 86.6 0.25 8.6E-06 51.6 2.2 36 208-246 81-116 (306)
486 1z2a_A RAS-related protein RAB 86.6 0.4 1.4E-05 44.7 3.5 24 207-230 5-28 (168)
487 3con_A GTPase NRAS; structural 86.6 0.31 1.1E-05 46.9 2.8 24 208-231 22-45 (190)
488 2gj8_A MNME, tRNA modification 86.5 0.35 1.2E-05 45.7 3.1 24 208-231 5-28 (172)
489 3kta_A Chromosome segregation 86.5 0.36 1.2E-05 46.1 3.2 21 209-229 28-48 (182)
490 2ocp_A DGK, deoxyguanosine kin 86.5 0.35 1.2E-05 48.8 3.2 25 208-232 3-27 (241)
491 3q72_A GTP-binding protein RAD 86.5 0.33 1.1E-05 45.3 2.9 22 209-230 4-25 (166)
492 2qm8_A GTPase/ATPase; G protei 86.4 0.81 2.8E-05 48.7 6.1 40 206-246 54-93 (337)
493 2b8t_A Thymidine kinase; deoxy 86.4 0.45 1.6E-05 47.1 3.8 35 207-242 12-46 (223)
494 1pzn_A RAD51, DNA repair and r 86.4 0.37 1.3E-05 51.6 3.4 26 206-231 130-155 (349)
495 2dr3_A UPF0273 protein PH0284; 86.3 0.46 1.6E-05 47.9 4.0 25 208-232 24-48 (247)
496 2ewv_A Twitching motility prot 86.2 0.51 1.8E-05 51.0 4.5 38 207-244 136-173 (372)
497 1m7b_A RND3/RHOE small GTP-bin 86.1 0.35 1.2E-05 46.2 2.9 25 207-231 7-31 (184)
498 1svi_A GTP-binding protein YSX 86.0 0.43 1.5E-05 46.1 3.4 25 206-230 22-46 (195)
499 3eph_A TRNA isopentenyltransfe 86.0 0.36 1.2E-05 52.0 3.0 25 208-232 3-27 (409)
500 3tui_C Methionine import ATP-b 86.0 0.37 1.3E-05 51.5 3.1 26 208-233 55-80 (366)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9e-40 Score=382.19 Aligned_cols=268 Identities=20% Similarity=0.255 Sum_probs=210.2
Q ss_pred ecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhc----cccccC------------------------
Q 002265 184 CGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN----NDEVNS------------------------ 235 (945)
Q Consensus 184 vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~----~~~~~~------------------------ 235 (945)
|||++++++|.++|.... +...++|+|+|||||||||||+++|+ .....+
T Consensus 131 ~GR~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 599999999999997542 24689999999999999999999996 111000
Q ss_pred --------------------------------C-ceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHHH
Q 002265 236 --------------------------------R-KKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVARM 282 (945)
Q Consensus 236 --------------------------------~-~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~ 282 (945)
+ +||||||||||+.. ++ .++. .+||+||||||++.++..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-----~~~~-~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-----RWAQ-ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-----HHHH-HTTCEEEEEESBGGGGGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-----cccc-cCCCEEEEEcCCHHHHHH
Confidence 4 49999999999852 22 1221 279999999999999987
Q ss_pred hcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhh
Q 002265 283 MGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESILESE 362 (945)
Q Consensus 283 ~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~~ 362 (945)
++.. ..+|++++|+.+|||+||.+++|... ..+.+.+++.+|+++|+|+||||+++|+.|+.+ + .+|...+...
T Consensus 281 ~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 281 ASQT-CEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp CCSC-EEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred cCCC-CeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 7533 24799999999999999999987543 246778899999999999999999999999876 3 3444444433
Q ss_pred cccccccCccchhHHHhhccCCCCchHHHHHHh-----------hhccCCCCceechHHHHHHHHHh--ccccccc-ccc
Q 002265 363 MWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFS-----------YCAVFPKDYNMDKHELIDLWMAQ--DYLNAKA-NKE 428 (945)
Q Consensus 363 ~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~w~ae--g~~~~~~-~~~ 428 (945)
.+.. ....+..++.+||++||+ ++|.||+ |||+||+++.|+ ++.|+|+ ||+.... +..
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred hhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 3222 235688999999999988 9999999 999999999998 8999999 9998765 566
Q ss_pred HHHHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHHHHHhhcccce
Q 002265 429 METIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSRKECL 479 (945)
Q Consensus 429 ~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~~i~~~~~~ 479 (945)
.+++++ ||++|+++||++....+ ....|+|||++|++|+.++.+++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 778887 99999999999986543 345799999999999999887754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.6e-32 Score=322.02 Aligned_cols=237 Identities=21% Similarity=0.238 Sum_probs=188.2
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc---------------------------
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN--------------------------- 234 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--------------------------- 234 (945)
..|||++++++|.++|.... +.++|+|+||||+||||||+++|++.+..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999997532 47899999999999999999998532000
Q ss_pred -------------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch
Q 002265 235 -------------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV 277 (945)
Q Consensus 235 -------------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~ 277 (945)
.++|+||||||||+. +.|+. ++ +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccCh
Confidence 138999999999983 34543 32 689999999999
Q ss_pred HHHHHhcCCCceeeeCC------CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCC-
Q 002265 278 SVARMMGTTELDIISIE------QLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKS- 350 (945)
Q Consensus 278 ~~~~~~~~~~~~~~~l~------~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~- 350 (945)
.++..+.... .|.++ +|+.+|||+||++... ... .++..++ |+|+||||+++|+.|+.+.
T Consensus 276 ~Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 276 QVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLD-CRP-------QDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp HHHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHHHC-CCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred HHHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHHcC-CCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 9987554332 56666 8999999999999842 211 1223333 9999999999999999875
Q ss_pred CHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHH-HHHHhhhccCCCCceechHHHHHHHHHhccccccccccH
Q 002265 351 TVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMV-KQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEM 429 (945)
Q Consensus 351 ~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~-k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~ 429 (945)
+.++|... ....+..+|.+||+.||+ +. |.||+|||+||+++.|+.+.++.+|.++|
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------- 400 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------- 400 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------
T ss_pred CHHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------
Confidence 67888753 124588999999999999 78 99999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHHHH
Q 002265 430 ETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQ 471 (945)
Q Consensus 430 ~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~ 471 (945)
++.++.++++|+++||++.. +....|+|||++++++.
T Consensus 401 eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 13478899999999999873 12246899999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=7.5e-32 Score=350.51 Aligned_cols=263 Identities=23% Similarity=0.326 Sum_probs=208.1
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---cC--------------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---NS-------------------- 235 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~---~~-------------------- 235 (945)
..+.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. .+
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45679999999999999997543 46899999999999999999999987321 01
Q ss_pred ----------------------------------Cc--eEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHH
Q 002265 236 ----------------------------------RK--KIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSV 279 (945)
Q Consensus 236 ----------------------------------~~--~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~ 279 (945)
++ ||||||||||+. ..|+ ...+||+||||||++.+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESSTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCHHH
Confidence 33 999999999974 2222 23679999999999998
Q ss_pred HHHhcCCCceeeeCCC-CChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHH
Q 002265 280 ARMMGTTELDIISIEQ-LAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWESI 358 (945)
Q Consensus 280 ~~~~~~~~~~~~~l~~-l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~ 358 (945)
+..+... ...+++.+ |+++||++||...++... +...+++++|+++|+|+||||+++|++|+.+. ..|...
T Consensus 270 ~~~~~~~-~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 270 TDSVMGP-KHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTCCSC-BCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHhhcCC-ceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 8553322 24899996 999999999999885322 23345689999999999999999999998875 356666
Q ss_pred Hhhhcccc----cc----cCccchhHHHhhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhccccccccccHH
Q 002265 359 LESEMWEV----EE----IGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEME 430 (945)
Q Consensus 359 l~~~~~~~----~~----~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~~ 430 (945)
++...... .. ....+..++.+||+.|++ +.|.||+|||+||+++.|+++.++..|.++ +
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~ 408 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------T 408 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------H
Confidence 65432221 10 113588899999999999 899999999999999999999999999654 2
Q ss_pred HHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHHHHHhhccc
Q 002265 431 TIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSRKE 477 (945)
Q Consensus 431 ~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~~i~~~~ 477 (945)
+.++.++++|+++||++... ++....|+|||++|++++..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 56788999999999998643 334456999999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=297.84 Aligned_cols=257 Identities=23% Similarity=0.310 Sum_probs=198.1
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---cC---------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---NS--------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~---~~--------------------- 235 (945)
.+.||||++++++|.++|.... ++.++|+|+||||+||||||++++++... .+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK---GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST---TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc---CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 3569999999999999997532 35789999999999999999999875311 00
Q ss_pred -----------------------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHH
Q 002265 236 -----------------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVA 280 (945)
Q Consensus 236 -----------------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~ 280 (945)
.+++||||||||+. +.+ ..+ .+|++||||||++.++
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l-~~l---~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL-KAF---DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH-HTT---CSSCEEEEEESCGGGG
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH-HHh---cCCCeEEEECCCcHHH
Confidence 16899999999863 222 222 5689999999999887
Q ss_pred HHhcCCCceeeeC---CCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHH
Q 002265 281 RMMGTTELDIISI---EQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLLRSKSTVEEWES 357 (945)
Q Consensus 281 ~~~~~~~~~~~~l---~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~ 357 (945)
..+... .+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+.+|++++.+. ..|..
T Consensus 271 ~~~~~~---~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 271 DSVMGP---KYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp TTCCSC---EEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HhcCCC---ceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 654432 4444 5899999999999988632 122235688999999999999999999998764 35777
Q ss_pred HHhhhcccc--------cccCccchhHHHhhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhccccccccccH
Q 002265 358 ILESEMWEV--------EEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANKEM 429 (945)
Q Consensus 358 ~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~~~ 429 (945)
+++...... ......+..++..||+.||+ +.|.||++||+||+++.|+.+.+...|.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 665433221 11123578899999999999 789999999999999999999999999653
Q ss_pred HHHHHHHHHHHHHcccccccccCCCCCcceeEechHHHHHHHHhh
Q 002265 430 ETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVS 474 (945)
Q Consensus 430 ~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdlv~dl~~~i~ 474 (945)
.+.+..++.+|+++||++.... +....|+||+++++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 1346788999999999985432 33346899999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.8e-27 Score=291.14 Aligned_cols=427 Identities=18% Similarity=0.093 Sum_probs=228.5
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeecccccccc----------
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFH---------- 564 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~---------- 564 (945)
...++.+.+..+.....++.+..+++|++|+++++.. ....+..+.++++|++|++++|.+...
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL------SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCC------CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcC------CCcccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 4567788888777665444477888888888887762 233566677888888888887766421
Q ss_pred ccccCCCccc-ccCcccccc-Cccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCC
Q 002265 565 PFHLDPNSIR-EIPKNVRKL-IHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGE 640 (945)
Q Consensus 565 ~l~l~~~~l~-~lp~~i~~L-~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~ 640 (945)
.+++++|.+. .+|..++.+ ++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +.++++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 1555666655 566666554 66777777776666 56666666666777776666633356654 56666666666666
Q ss_pred CCCCccCccCCCCCC-CCCcCCccccc--------------------------CC-cCCCCcccccccccCCCCCeEEEc
Q 002265 641 TYSLKYMPIGISKLT-SLRTLDRFVVG--------------------------GG-VDGSNTCRLESLKNLQLRGKCSIE 692 (945)
Q Consensus 641 ~~~l~~lp~~i~~L~-~L~~L~~~~~~--------------------------~~-~~~~~~~~l~~L~~L~L~~~l~i~ 692 (945)
|.....+|..+..++ +|++|++..+. .. ..+.....+++|+.|+++++..-
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 431 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS- 431 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE-
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc-
Confidence 643335555554444 45555444433 21 22223334444444444433111
Q ss_pred CCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc----------ccCchhHHHHHhcCCCCCCccEEEEEeeCC
Q 002265 693 GLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG----------RRKNEKDKQLLEALQPPLNLEEFGIVFYGG 762 (945)
Q Consensus 693 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 762 (945)
...+..+..+++|+.|+++.|.+.+...... ..........+..+..+++|+.|++++|..
T Consensus 432 ---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 432 ---------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp ---------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ---------CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 1112233444445555554444321100000 000000011233455567777777777766
Q ss_pred C-CCCcccccccCCcEEEEecCCCCCcCCC-CCccc-cceEeeccccCceEeCccccCCCCCCCC---------------
Q 002265 763 N-IFPKWLTSLTNLRELRLVSCVDCEHLPP-LGKLA-LEKLELGNLKSVKRLGNEFLGIEESSED--------------- 824 (945)
Q Consensus 763 ~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~--------------- 824 (945)
. .+|.+++.+++|+.|++++|...+.+|. ++.++ |+.|+++++.-...++..+.........
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 5 5677777777777777777766655554 66677 7777777664222232222111000000
Q ss_pred -------------------------------CC----CCCCCCCcCcCCCccceeeccCccccccccccccccccccCCC
Q 002265 825 -------------------------------DP----SSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMP 869 (945)
Q Consensus 825 -------------------------------~~----~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp 869 (945)
+. -.+..+..+..+++|++|+++++.--..++.. .+.++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~------l~~l~ 656 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE------IGSMP 656 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG------GGGCT
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH------Hhccc
Confidence 00 01123344556778888888776422233322 22222
Q ss_pred ccc---ccC-------CCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcch-------------------
Q 002265 870 QLP---ILE-------DHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPLL------------------- 920 (945)
Q Consensus 870 ~l~---~~~-------~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L------------------- 920 (945)
.|. ..+ ...+.++++|+.|+|++|.....+|..+.++++|+.|++++|+.-
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 221 111 125667788999999999766789988889999999998877421
Q ss_pred ----H----HHhccCCCCCcccccccccccc
Q 002265 921 ----E----NRYREGKGEDWHMISHIAHIKW 943 (945)
Q Consensus 921 ----~----~~~~~~~~~~~~~i~~ip~~~~ 943 (945)
. ..|....+++|++|+|+|.+.-
T Consensus 737 N~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 737 NPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp CTEEESTTSCCCCSCC---------------
T ss_pred CchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 0 1355677789999999998764
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2e-25 Score=266.62 Aligned_cols=342 Identities=13% Similarity=0.128 Sum_probs=261.4
Q ss_pred CCcEEEEEeecCCCCC------------------CCcccc--CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceE
Q 002265 495 GVKVRHLGLNFEGGDS------------------FPMSIC--GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRAL 554 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L 554 (945)
...++.+.+..+.+.. +|..+. ++++|++|+++++.. ...+|..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l------~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN------LTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT------CSSCCTTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC------CccChHHHhcCCCCCEE
Confidence 4578999999998887 899988 999999999999862 23356778999999999
Q ss_pred eeccccccccccccCCCc-cc--ccCcccccc------CcccccccccccccccCh--hhhcCCcccEEEecCCCCcccc
Q 002265 555 VIRQSSLYFHPFHLDPNS-IR--EIPKNVRKL------IHLKYLNLSELGIEILPE--TLCELYNLQKLDIRRCRNLREL 623 (945)
Q Consensus 555 ~l~~~~~~~~~l~l~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~l 623 (945)
+ +++|. +. .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.....+
T Consensus 279 ~------------Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 279 N------------VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp E------------CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred E------------CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9 66665 55 488888887 999999999999999999 9999999999999999833389
Q ss_pred CcccccccCCCeeecCCCCCCccCccCCCCCCC-CCcCCcccccCCcCCCCcccc--cccccCCCCCeEEEcCCCCCCCh
Q 002265 624 PAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS-LRTLDRFVVGGGVDGSNTCRL--ESLKNLQLRGKCSIEGLSNVSHL 700 (945)
Q Consensus 624 P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l--~~L~~L~L~~~l~i~~l~~~~~~ 700 (945)
| .++.+++|++|++++| .+..+|..++.+++ |++|++..+.....+.....+ .+|+.|+++++ .+
T Consensus 347 p-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N----------~l 414 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN----------EI 414 (636)
T ss_dssp C-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS----------CT
T ss_pred h-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC----------cC
Confidence 9 8999999999999998 56699999999999 999999988876666554443 37888887765 12
Q ss_pred hhhhhcccc-------cCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCccccc--
Q 002265 701 DEAERSQLY-------NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTS-- 771 (945)
Q Consensus 701 ~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~-- 771 (945)
....+..+. .+++|+.|+++.|.+...+. ..+..+++|+.|++++|....+|..+..
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--------------ELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT--------------HHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCH--------------HHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 222223333 66789999999888542210 1123468899999999988888876543
Q ss_pred ------ccCCcEEEEecCCCCCcCCC-CC--ccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCcc
Q 002265 772 ------LTNLRELRLVSCVDCEHLPP-LG--KLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKL 841 (945)
Q Consensus 772 ------l~~L~~L~L~~~~~~~~l~~-l~--~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 841 (945)
+++|+.|+|++|... .+|. +. .++ |+.|+++++. +..+ |..+..+++|
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~i--------------------p~~~~~l~~L 538 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKF--------------------PTQPLNSSTL 538 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSC--------------------CCGGGGCSSC
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCc--------------------ChhhhcCCCC
Confidence 239999999999755 6665 44 788 9999998865 3222 3345678999
Q ss_pred ceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 842 KSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 842 ~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
++|+|+++..+..- ...+.+|. .+..+++|+.|+|++| .++.+|..+. ++|+.|++++|+.
T Consensus 539 ~~L~Ls~N~~ls~N-------~l~~~~p~-------~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 539 KGFGIRNQRDAQGN-------RTLREWPE-------GITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CEEECCSCBCTTCC-------BCCCCCCT-------TGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTT
T ss_pred CEEECCCCcccccC-------cccccChH-------HHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCC
Confidence 99999775422110 11234444 5677888999999999 5599998765 7999999999974
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.2e-25 Score=270.25 Aligned_cols=344 Identities=14% Similarity=0.108 Sum_probs=257.7
Q ss_pred CCcEEEEEeecCCCCC------------------CCcccc--CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceE
Q 002265 495 GVKVRHLGLNFEGGDS------------------FPMSIC--GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRAL 554 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L 554 (945)
...++.|.+..+.+.. +|..+. ++++|++|.+++|.. ...+|..+.++++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l------~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN------MTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT------CCSCCGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC------CccChHHHhCCCCCCEE
Confidence 4578999999998887 888877 999999999998862 23356779999999999
Q ss_pred eeccccccccccccCCCc-cc--ccCccccccC-------cccccccccccccccCh--hhhcCCcccEEEecCCCCccc
Q 002265 555 VIRQSSLYFHPFHLDPNS-IR--EIPKNVRKLI-------HLKYLNLSELGIEILPE--TLCELYNLQKLDIRRCRNLRE 622 (945)
Q Consensus 555 ~l~~~~~~~~~l~l~~~~-l~--~lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~ 622 (945)
+ +++|. +. .+|..++.+. +|++|+|++|.+..+|. .++++++|++|+|++|. +..
T Consensus 521 ~------------Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 521 N------------IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp E------------CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred E------------CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 9 55554 55 4787777776 99999999999999999 99999999999999998 669
Q ss_pred cCcccccccCCCeeecCCCCCCccCccCCCCCCC-CCcCCcccccCCcCCCCccccc--ccccCCCCCeEEEcCCCCCCC
Q 002265 623 LPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS-LRTLDRFVVGGGVDGSNTCRLE--SLKNLQLRGKCSIEGLSNVSH 699 (945)
Q Consensus 623 lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~--~L~~L~L~~~l~i~~l~~~~~ 699 (945)
+| .++++++|++|++++| .+..+|..+..+++ |+.|++..+.....+.....+. .|+.|+++++-.....+.
T Consensus 588 lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~--- 662 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN--- 662 (876)
T ss_dssp CC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS---
T ss_pred ch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc---
Confidence 99 7999999999999998 45589999999999 9999999888666665444443 388887775511110111
Q ss_pred hhhhhhcccc--cCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCccccc------
Q 002265 700 LDEAERSQLY--NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTS------ 771 (945)
Q Consensus 700 ~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~------ 771 (945)
....+. .+++|+.|+++.|.+...+ . ..+..+++|+.|++++|....+|.++..
T Consensus 663 ----l~~~l~~~~~~~L~~L~Ls~N~L~~lp-----------~---~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 663 ----ISCSMDDYKGINASTVTLSYNEIQKFP-----------T---ELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp ----CSSCTTTCCCCCEEEEECCSSCCCSCC-----------H---HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred ----chhhhccccCCCcCEEEccCCcCCccC-----------H---HHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 011122 3458899999988754221 0 1123568899999999988888886653
Q ss_pred --ccCCcEEEEecCCCCCcCCC-CC--ccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceee
Q 002265 772 --LTNLRELRLVSCVDCEHLPP-LG--KLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLE 845 (945)
Q Consensus 772 --l~~L~~L~L~~~~~~~~l~~-l~--~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 845 (945)
+++|+.|+|++|... .+|. +. .++ |+.|+|+++. +..+ |..+..+++|+.|+
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~l--------------------p~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSF--------------------PTQPLNSSQLKAFG 782 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSC--------------------CCGGGGCTTCCEEE
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCcc--------------------chhhhcCCCCCEEE
Confidence 338999999999654 6665 44 788 9999998864 3222 33356889999999
Q ss_pred ccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 846 IKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 846 L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
|++++.+..- ...+.+|. .+..+++|+.|+|++| .++.+|..+. ++|+.|+|++|+.
T Consensus 783 Ls~N~~ls~N-------~l~~~ip~-------~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 783 IRHQRDAEGN-------RILRQWPT-------GITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCCBCTTCC-------BCCCCCCT-------TGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCCCCcccc-------cccccChH-------HHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 9886522111 11234454 6777888999999999 4599998765 6999999999975
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1e-25 Score=269.11 Aligned_cols=372 Identities=15% Similarity=0.143 Sum_probs=245.0
Q ss_pred CcEEEEEeecCCCC-CCCccccCCCceeEEEeccCCC------CC-----------------------------------
Q 002265 496 VKVRHLGLNFEGGD-SFPMSICGLDRLRSLLIYDRSS------FN----------------------------------- 533 (945)
Q Consensus 496 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~------~~----------------------------------- 533 (945)
..++.+.+..+++. .+|..+.++++|++|+++++.. +.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46899999888875 6688999999999999998742 00
Q ss_pred -------------------------------CCchhhhhHHHhccCCccceEeeccccccccccccCCCc------cccc
Q 002265 534 -------------------------------PSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS------IREI 576 (945)
Q Consensus 534 -------------------------------~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~------l~~l 576 (945)
...+.. +|..+.++++|++|++++|.+........... ...+
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 001223 56668899999999966655432100000000 0018
Q ss_pred Ccccc--ccCccccccccccccc-ccChhhhcCCcccEEEecCCCCcc--ccCcccccc------cCCCeeecCCCCCCc
Q 002265 577 PKNVR--KLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLR--ELPAGIGKL------MNMRSLLNGETYSLK 645 (945)
Q Consensus 577 p~~i~--~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lP~~i~~L------~~L~~L~l~~~~~l~ 645 (945)
|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|..+. .+|..++++ ++|++|++++| .+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC
Confidence 99988 9999999999999865 889999999999999999987344 689888887 99999999998 455
Q ss_pred cCcc--CCCCCCCCCcCCcccccCC-cCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCC-CCeEEEEe
Q 002265 646 YMPI--GISKLTSLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKN-LLRLHLEF 721 (945)
Q Consensus 646 ~lp~--~i~~L~~L~~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~ 721 (945)
.+|. .++++++|++|++..+... ..+ ....+.+|+.|+++++- +..+ +..+..+++ |+.|+++.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~l----------p~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEI----------PANFCGFTEQVENLSFAH 386 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEEC----------CTTSEEECTTCCEEECCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccc----------cHhhhhhcccCcEEEccC
Confidence 8998 8999999999999888765 555 66678888888888652 2222 234667777 88898888
Q ss_pred ccccCCCCCccccCchhHHHHHhcCCC--CCCccEEEEEeeCCCC-CCcccc-------cccCCcEEEEecCCCCCcCCC
Q 002265 722 GRVVDGEGEEGRRKNEKDKQLLEALQP--PLNLEEFGIVFYGGNI-FPKWLT-------SLTNLRELRLVSCVDCEHLPP 791 (945)
Q Consensus 722 ~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~-lp~~~~-------~l~~L~~L~L~~~~~~~~l~~ 791 (945)
|.+... +..+.. +++|+.|++++|.... .|.++. .+.+|+.|++++|... .+|.
T Consensus 387 N~l~~l---------------p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 450 (636)
T 4eco_A 387 NKLKYI---------------PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK 450 (636)
T ss_dssp SCCSSC---------------CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT
T ss_pred CcCccc---------------chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH
Confidence 875422 122222 2367777777666533 355555 5566777777766543 4443
Q ss_pred --CCccc-cceEeeccccCceEeCccccCCC--------CCCCCCCC---CCCCCCcCc--CCCccceeeccCccccccc
Q 002265 792 --LGKLA-LEKLELGNLKSVKRLGNEFLGIE--------ESSEDDPS---SSSSSSSVT--AFPKLKSLEIKGLDELEEW 855 (945)
Q Consensus 792 --l~~l~-L~~L~l~~~~~L~~l~~~~~~~~--------~~~~~~~~---~~~~~~~~~--~~~~L~~L~L~~~~~L~~~ 855 (945)
+..++ |+.|+++++. +..++....... .+...+.. ...+|..+. .+++|++|+|+++. ++
T Consensus 451 ~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~-- 526 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FS-- 526 (636)
T ss_dssp HHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CS--
T ss_pred HHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CC--
Confidence 23356 7777776654 333332221100 01111110 112233333 55666666666642 11
Q ss_pred cccccccccccCCCcccccCCCCCCCCCccceEeecc------CcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 856 NYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWY------CPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 856 ~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~------c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
.+|. .+..+++|+.|+|++ |...+.+|..+.++++|+.|++++|..
T Consensus 527 -----------~ip~-------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 527 -----------KFPT-------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp -----------SCCC-------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -----------CcCh-------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 1232 455677899999954 555677898899999999999999975
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.3e-24 Score=259.76 Aligned_cols=176 Identities=20% Similarity=0.195 Sum_probs=129.1
Q ss_pred CCcEEEEEeecCCCCCCCc-cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFPM-SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++++.++.+.+..++. .+.++++|++|+++++. +..+.+..|.++++|++|+ +++|.+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~------------Ls~n~l 92 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLI------------LTGNPI 92 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEE------------CTTCCC
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeE------------CCCCcc
Confidence 4678888888888776644 77888999999998876 3345566788889999999 666666
Q ss_pred ccc-CccccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCcc-ccCcccccccCCCeeecCCCCCCccCccC
Q 002265 574 REI-PKNVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRSLLNGETYSLKYMPIG 650 (945)
Q Consensus 574 ~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~ 650 (945)
..+ |..|+++.+|++|++++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 666 677888889999999998888766 678888999999998887332 57888888999999999888444444555
Q ss_pred CCCCCCCC----cCCcccccCCcCCCCcccccccccCCCCCe
Q 002265 651 ISKLTSLR----TLDRFVVGGGVDGSNTCRLESLKNLQLRGK 688 (945)
Q Consensus 651 i~~L~~L~----~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 688 (945)
++.+++|+ +|++..+.....+.......+|+.|+++++
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 66666655 577766665554444444446777766544
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.3e-25 Score=270.07 Aligned_cols=367 Identities=18% Similarity=0.186 Sum_probs=211.5
Q ss_pred CcEEEEEeecCCCC-CCCccccCCCceeEEEe-ccCCC-----CCC----------------------------------
Q 002265 496 VKVRHLGLNFEGGD-SFPMSICGLDRLRSLLI-YDRSS-----FNP---------------------------------- 534 (945)
Q Consensus 496 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l-~~~~~-----~~~---------------------------------- 534 (945)
..+..|.+..+++. .+|..+.++++|++|++ +++.. +..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56889999888875 67889999999999999 54420 000
Q ss_pred --------------------------------CchhhhhHHHhccCCccceEeeccccccccccccCC-----Cc-cccc
Q 002265 535 --------------------------------SLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDP-----NS-IREI 576 (945)
Q Consensus 535 --------------------------------~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~-----~~-l~~l 576 (945)
..+.. +|..+.++++|++|++++|.+....+.... +. -..+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00111 456688888999999666664431000000 00 0027
Q ss_pred Ccccc--ccCccccccccccccc-ccChhhhcCCcccEEEecCCCCcc--ccCccccccc-------CCCeeecCCCCCC
Q 002265 577 PKNVR--KLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLR--ELPAGIGKLM-------NMRSLLNGETYSL 644 (945)
Q Consensus 577 p~~i~--~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lP~~i~~L~-------~L~~L~l~~~~~l 644 (945)
|..++ ++++|++|+|++|.+. .+|..+++|++|++|+|++|..+. .+|..+++++ +|++|++++| .+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cC
Confidence 77776 7888888888877744 777778888888888888776333 4777676665 7888888777 44
Q ss_pred ccCcc--CCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCC-CCeEEEEe
Q 002265 645 KYMPI--GISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKN-LLRLHLEF 721 (945)
Q Consensus 645 ~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~ 721 (945)
..+|. .++++++|+.|++..+.....+ ....+++|+.|+|+++. +. .++..+..+++ |+.|+++.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~----------~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IE----------EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CS----------CCCTTSCEECTTCCEEECCS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cc----------cchHHHhhccccCCEEECcC
Confidence 47777 7777888888877777655545 45566677777666541 11 12233556666 77777777
Q ss_pred ccccCCCCCccccC----------chhHHHHHh----cCC--CCCCccEEEEEeeCCCCCCcccc-cccCCcEEEEecCC
Q 002265 722 GRVVDGEGEEGRRK----------NEKDKQLLE----ALQ--PPLNLEEFGIVFYGGNIFPKWLT-SLTNLRELRLVSCV 784 (945)
Q Consensus 722 ~~l~~~~~~~~~~~----------~~~~~~~~~----~l~--~~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~ 784 (945)
|.+...+....... .......+. .+. ..++|+.|++++|....+|.++. .+++|+.|+|++|.
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 76432211000000 000000000 000 11244444444444444444332 44445555554443
Q ss_pred CCCcCCC---------CCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCc--CCCccceeeccCcccc
Q 002265 785 DCEHLPP---------LGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVT--AFPKLKSLEIKGLDEL 852 (945)
Q Consensus 785 ~~~~l~~---------l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~L 852 (945)
.. .+|. +..++ |+.|+|++|. +..+ |..+. .+++|+.|+|+++. +
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l--------------------p~~l~~~~l~~L~~L~Ls~N~-L 765 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL--------------------SDDFRATTLPYLSNMDVSYNC-F 765 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC--------------------CGGGSTTTCTTCCEEECCSSC-C
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCC-Cccc--------------------hHHhhhccCCCcCEEEeCCCC-C
Confidence 22 2222 11223 4444444432 2211 22222 55666666666642 2
Q ss_pred ccccccccccccccCCCcccccCCCCCCCCCccceEeecc------CcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 853 EEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWY------CPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 853 ~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~------c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
+ .+|. .+..+++|+.|+|++ |.....+|..+.++++|+.|++++|..
T Consensus 766 ~-------------~lp~-------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 766 S-------------SFPT-------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp S-------------SCCC-------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-------------ccch-------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 1 1232 455677899999977 545677898899999999999999975
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4.3e-24 Score=255.22 Aligned_cols=174 Identities=15% Similarity=0.044 Sum_probs=128.6
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++++.++.+.+..+ |..+.++++|++|+++++. +..+.+..|.++++|++|+ +++|.+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~------------Ls~n~l 93 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQHRLDTLV------------LTANPL 93 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEE------------CTTCCC
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc------cceeChhhccCccccCeee------------CCCCcc
Confidence 45789999999988776 5678899999999999886 3345677789999999999 666666
Q ss_pred ccc-CccccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCccCccC
Q 002265 574 REI-PKNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKYMPIG 650 (945)
Q Consensus 574 ~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~ 650 (945)
..+ |..++.+++|++|++++|.+..+ |..++++++|++|++++|. +..++ +.+..+++|++|++++|......|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhh
Confidence 555 66788899999999999988876 6778889999999999887 55542 33455889999999888444334556
Q ss_pred CCCCCCCC--cCCcccccCCcCCCCcccccccccCCCCC
Q 002265 651 ISKLTSLR--TLDRFVVGGGVDGSNTCRLESLKNLQLRG 687 (945)
Q Consensus 651 i~~L~~L~--~L~~~~~~~~~~~~~~~~l~~L~~L~L~~ 687 (945)
++.+++|+ +|++..+.....+........|+.|++++
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 78888888 66666666444443333444555555544
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.5e-24 Score=263.32 Aligned_cols=332 Identities=18% Similarity=0.145 Sum_probs=219.9
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeecccccccc----------
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFH---------- 564 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~---------- 564 (945)
...++++.+..+.+.... .+..+++|++|+++++.. ...++. +.++++|++|++++|.+...
T Consensus 177 l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l------~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNF------STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp CTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCC------CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred CCCCCEEECCCCcccccC-CcccCCcCCEEECcCCcC------CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 345677777766544322 236788899999888763 222444 78899999999999887531
Q ss_pred --ccccCCCcccc-cCccccccCccccccccccccc-ccChhhhcC-CcccEEEecCCCCccccCcccccccCCCeeecC
Q 002265 565 --PFHLDPNSIRE-IPKNVRKLIHLKYLNLSELGIE-ILPETLCEL-YNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNG 639 (945)
Q Consensus 565 --~l~l~~~~l~~-lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~ 639 (945)
.+++++|.+.. +|.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.....+|..++++++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 16677777653 4433 7889999999999988 889988775 999999999998556899999999999999999
Q ss_pred CCCCCccCccC-CCCCCCCCcCCcccccCC-cCCCCccccc-ccccCCCCCeEEEcCCC---------CCC-------Ch
Q 002265 640 ETYSLKYMPIG-ISKLTSLRTLDRFVVGGG-VDGSNTCRLE-SLKNLQLRGKCSIEGLS---------NVS-------HL 700 (945)
Q Consensus 640 ~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~-~~~~~~~~l~-~L~~L~L~~~l~i~~l~---------~~~-------~~ 700 (945)
+|.....+|.. ++.+++|++|++..+... ..+.....+. .|+.|+++++......+ .+. .+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 99655588876 999999999999888754 4455555665 78888877653221111 110 11
Q ss_pred hhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEE
Q 002265 701 DEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELR 779 (945)
Q Consensus 701 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~ 779 (945)
....+..+.++++|+.|+++.|.+.+. .+..+..+++|+.|++++|... .+|..+..+++|+.|+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~--------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGT--------------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESC--------------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCc--------------ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 123345677888899998888875432 1223444566666666666554 4566666666666666
Q ss_pred EecCCCCCcCCC-CCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCC----CCCCcCcCCCccceeeccCcc
Q 002265 780 LVSCVDCEHLPP-LGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSS----SSSSSVTAFPKLKSLEIKGLD 850 (945)
Q Consensus 780 L~~~~~~~~l~~-l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~ 850 (945)
+++|...+.+|. ++.++ |+.|++++|.-...++..+.....+...+...+ .+|..+..+++|++|+++++.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 666655544443 55556 666666665422233333333333332222222 334556788889999888764
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3e-24 Score=256.55 Aligned_cols=395 Identities=15% Similarity=0.118 Sum_probs=203.2
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccc--------
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHP-------- 565 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~-------- 565 (945)
...++++.+..+.+..+ |..+.++++|++|+++++. +....|..|.++++|++|++++|.+...+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc------ccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 45788888888877766 5567888999999998876 23445667888899999996665543211
Q ss_pred ----cccCCCccc--ccCccccccCccccccccccccccc-ChhhhcCCccc----EEEecCCCCccccCcccccccCCC
Q 002265 566 ----FHLDPNSIR--EIPKNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQ----KLDIRRCRNLRELPAGIGKLMNMR 634 (945)
Q Consensus 566 ----l~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~----~L~L~~~~~l~~lP~~i~~L~~L~ 634 (945)
+++++|.+. .+|..++++++|++|++++|.+..+ |..++.+.+|+ +|++++|. +..+|.......+|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCceee
Confidence 345555544 2455555666666666665555533 22333333322 34444433 333333332222444
Q ss_pred eeecCCCCCC----------------------------------------------------------ccCccCCCCCCC
Q 002265 635 SLLNGETYSL----------------------------------------------------------KYMPIGISKLTS 656 (945)
Q Consensus 635 ~L~l~~~~~l----------------------------------------------------------~~lp~~i~~L~~ 656 (945)
+|++++|... ..+|. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCC
Confidence 4444433110 00111 233344
Q ss_pred CCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChh-----------hhhhcccccCCCCCeEEEEecccc
Q 002265 657 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLD-----------EAERSQLYNKKNLLRLHLEFGRVV 725 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~-----------~~~~~~l~~~~~L~~L~l~~~~l~ 725 (945)
|+.|++..+.....+ ....+.+|+.|+++++.. ..++.+ ... ......+..+++|+.|+++.|.+.
T Consensus 287 L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp CSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred CCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence 444444444333322 222333444444333211 111100 000 000112334555666666555432
Q ss_pred CCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCC--CCCccc-cceEee
Q 002265 726 DGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLP--PLGKLA-LEKLEL 802 (945)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~-L~~L~l 802 (945)
... ..+..+..+++|+.|++++|....+|..+..+++|+.|++++|......| .+..++ |+.|++
T Consensus 364 ~~~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 364 FSG------------CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp EEE------------ECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CCc------------chhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 110 00122344566777777776665566666677777777777765444333 455666 777777
Q ss_pred ccccCceEeCccccCCCCCCCCCCCCC-----CCCCcCcCCCccceeeccCccccccccccccccccccCCCcc---ccc
Q 002265 803 GNLKSVKRLGNEFLGIEESSEDDPSSS-----SSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQL---PIL 874 (945)
Q Consensus 803 ~~~~~L~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l---~~~ 874 (945)
++|.-....+..+.....+...+...+ ..+..+..+++|++|++++|. ++.+... ....++.| .+.
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-----VFDTLHRLQLLNMS 505 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-----TTTTCTTCCEEECC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChh-----hhcccccCCEEECC
Confidence 666522222222222233322222222 124445667777777777763 3322210 11222222 222
Q ss_pred CC-------CCCCCCCccceEeeccCcCCCCCCcCCCCCC-CccEEEEeCCcc
Q 002265 875 ED-------HRTTDIPRLSSLRIWYCPKLKVLPDYLLRTT-TLQKLTIWGCPL 919 (945)
Q Consensus 875 ~~-------~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~-~L~~L~l~~c~~ 919 (945)
++ ..+..+++|+.|+|++| .++.+|..+..++ +|+.|++++||.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 22 24566788999999998 5788888777776 599999988774
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.6e-24 Score=255.30 Aligned_cols=140 Identities=20% Similarity=0.253 Sum_probs=88.2
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccc--------
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHP-------- 565 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~-------- 565 (945)
+..++++.++.+.+..+ +..+.++++|++|+++++. +..+.+..|.++++|++|++++|.+...+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 45688888888877665 3467888889999988876 23445666888888888886665543211
Q ss_pred ----cccCCCcccccCc-cccccCcccccccccccccc--cChhhhcCCcccEEEecCCCCcccc-CcccccccCC----
Q 002265 566 ----FHLDPNSIREIPK-NVRKLIHLKYLNLSELGIEI--LPETLCELYNLQKLDIRRCRNLREL-PAGIGKLMNM---- 633 (945)
Q Consensus 566 ----l~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L---- 633 (945)
+++++|.+..+|. .++.+.+|++|++++|.+.. +|..++++++|++|++++|. +..+ |..++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhh
Confidence 3455555555544 45666666666666666553 46666666666666666665 3333 3445555555
Q ss_pred CeeecCCC
Q 002265 634 RSLLNGET 641 (945)
Q Consensus 634 ~~L~l~~~ 641 (945)
++|++++|
T Consensus 180 ~~L~l~~n 187 (570)
T 2z63_A 180 LSLDLSLN 187 (570)
T ss_dssp CEEECTTC
T ss_pred hhcccCCC
Confidence 55555555
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=3.7e-24 Score=252.54 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=111.3
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
...++++.+..+.+..+ |..+.++++|++|+++++. +..+.+..|.++++|++|+ +++|.+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~------------Ls~n~l 86 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLD------------LSDNHL 86 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEE------------CTTSCC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEE------------CCCCcc
Confidence 35688999988887765 5678889999999999886 3344566788899999999 666666
Q ss_pred cccCcc-ccccCccccccccccccc--ccChhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCccCcc
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIE--ILPETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKYMPI 649 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~ 649 (945)
..+|.. ++.+++|++|++++|.+. ..|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 666654 777888888888888777 346677888888888888776566666 3677788888888877755555666
Q ss_pred CCCCCCCCCcCCcccc
Q 002265 650 GISKLTSLRTLDRFVV 665 (945)
Q Consensus 650 ~i~~L~~L~~L~~~~~ 665 (945)
.++.+++|++|++..+
T Consensus 167 ~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTTTCSEEEEEEEECS
T ss_pred hhhccccCceEecccC
Confidence 6666665555554433
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=242.78 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=32.4
Q ss_pred CCCCCccceEeeccCcCCCCCCcC-CCCCCCccEEEEeCCcc
Q 002265 879 TTDIPRLSSLRIWYCPKLKVLPDY-LLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 879 l~~l~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~ 919 (945)
+..+++|+.|++++| .++.+|.. +.++++|+.|++++||.
T Consensus 440 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 440 VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 446778999999988 67788876 77888999999988874
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=5.4e-23 Score=245.64 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeecccccccc---------
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFH--------- 564 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~--------- 564 (945)
...++++.++.+.+..+ |..+.++++|++|+++++. +....+..|.++++|++|++++|.+...
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP------LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCc------ccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 34577777777766544 5567777888888887765 2233455577777777777666655432
Q ss_pred ---ccccCCCcccccC-ccccccCccccccccccccccc-ChhhhcCCccc--EEEecCCC
Q 002265 565 ---PFHLDPNSIREIP-KNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQ--KLDIRRCR 618 (945)
Q Consensus 565 ---~l~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~--~L~L~~~~ 618 (945)
.+++++|.+..++ ..+..+++|++|++++|.+..+ |..++.+++|+ +|++++|.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 1456666666542 2233367777777777776644 44566666666 66666665
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1e-23 Score=233.19 Aligned_cols=301 Identities=19% Similarity=0.202 Sum_probs=178.3
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE 575 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~ 575 (945)
..++++.+..+.+..++ .+..+++|++|+++++.. ..+.+ +..+++|++|+ +++|.+..
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i------~~~~~--~~~l~~L~~L~------------L~~n~i~~ 102 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQI------TDISP--LSNLVKLTNLY------------IGTNKITD 102 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCC------CCCGG--GTTCTTCCEEE------------CCSSCCCC
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCcc------ccchh--hhcCCcCCEEE------------ccCCcccC
Confidence 34555555555554443 244555555555555431 11111 45555555555 33333344
Q ss_pred cCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCC
Q 002265 576 IPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLT 655 (945)
Q Consensus 576 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 655 (945)
+| .++.+++|++|++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++++| .+..++. ++.++
T Consensus 103 ~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~ 177 (347)
T 4fmz_A 103 IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLT 177 (347)
T ss_dssp CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCT
T ss_pred ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCC
Confidence 43 35555555555555555555544 55555555555555543443333 555555555555555 2333322 44444
Q ss_pred CCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccC
Q 002265 656 SLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRK 735 (945)
Q Consensus 656 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 735 (945)
+|+.|++..+.... .. .+..+++|+.|+++.|.+...
T Consensus 178 ~L~~L~l~~n~l~~------------------------------~~-----~~~~l~~L~~L~l~~n~l~~~-------- 214 (347)
T 4fmz_A 178 DLYSLSLNYNQIED------------------------------IS-----PLASLTSLHYFTAYVNQITDI-------- 214 (347)
T ss_dssp TCSEEECTTSCCCC------------------------------CG-----GGGGCTTCCEEECCSSCCCCC--------
T ss_pred CCCEEEccCCcccc------------------------------cc-----cccCCCccceeecccCCCCCC--------
Confidence 44444433322111 10 145567778888877764321
Q ss_pred chhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCcc
Q 002265 736 NEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNE 814 (945)
Q Consensus 736 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~ 814 (945)
..+..+++|+.|++++|....+|. +..+++|+.|++++|. +..++.+..++ |+.|++++|. +..++
T Consensus 215 --------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-- 281 (347)
T 4fmz_A 215 --------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDIS-- 281 (347)
T ss_dssp --------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCG--
T ss_pred --------chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCCh--
Confidence 115567788888888888877776 7889999999999985 44567778888 9999998874 33321
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCc
Q 002265 815 FLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCP 894 (945)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~ 894 (945)
.+..+++|++|++++|. +..... ..+..+++|+.|++++|+
T Consensus 282 -------------------~~~~l~~L~~L~L~~n~-l~~~~~-------------------~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 282 -------------------VLNNLSQLNSLFLNNNQ-LGNEDM-------------------EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -------------------GGGGCTTCSEEECCSSC-CCGGGH-------------------HHHHTCTTCSEEECCSSS
T ss_pred -------------------hhcCCCCCCEEECcCCc-CCCcCh-------------------hHhhccccCCEEEccCCc
Confidence 14578999999999974 222211 123445669999999995
Q ss_pred CCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 895 KLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 895 ~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
+..+|. +..+++|+.|++++|+.
T Consensus 323 -l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 323 -ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp -CCCCGG-GGGCTTCSEESSSCC--
T ss_pred -cccccC-hhhhhccceeehhhhcc
Confidence 777765 77899999999999973
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.5e-23 Score=238.06 Aligned_cols=354 Identities=17% Similarity=0.161 Sum_probs=228.5
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++++.++.+.+..+ |..+.++++|++|+++++... ..+.+..|.++++|++|+ +++|.+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~------------Ls~n~l 91 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILK------------LDYNQF 91 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEE------------CTTCTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEe------------CCCCcc
Confidence 45678888887777655 566778888888888776521 123345577788888888 555555
Q ss_pred ccc-CccccccCcccccccccccccc-cChh--hhcCCcccEEEecCCCCcccc-Ccc-cccccCCCeeecCCCCCCccC
Q 002265 574 REI-PKNVRKLIHLKYLNLSELGIEI-LPET--LCELYNLQKLDIRRCRNLREL-PAG-IGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 574 ~~l-p~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~l~~l 647 (945)
..+ |..++.+.+|++|++++|.++. .|.. ++++++|++|++++|. +..+ |.. +.++++|++|++++|......
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC
Confidence 554 6677888888888888888773 4444 7788888888888887 4444 554 678888888888887544444
Q ss_pred ccCCCCC--CCCCcCCcccccCCcCCCC---------cccccccccCCCCCeEEEcCCCCCCChhhhhhccc---ccCCC
Q 002265 648 PIGISKL--TSLRTLDRFVVGGGVDGSN---------TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQL---YNKKN 713 (945)
Q Consensus 648 p~~i~~L--~~L~~L~~~~~~~~~~~~~---------~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l---~~~~~ 713 (945)
|..+..+ .+|+.|++..+.....+.. ...+.+|+.|+++++ .+....+..+ ....+
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n----------~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN----------GFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS----------CCCHHHHHHHHHHTTTCC
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC----------cccccchhhhhccccccc
Confidence 5555554 5666666666554433211 123456666666654 1111122222 22367
Q ss_pred CCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCC-CCcccccccCCcEEEEecCCCCCcCC-C
Q 002265 714 LLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNI-FPKWLTSLTNLRELRLVSCVDCEHLP-P 791 (945)
Q Consensus 714 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~l~-~ 791 (945)
|+.|+++.+............... ....... ...++|+.|+++++.... .|.++..+++|+.|++++|......| .
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDP-DNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCC-CTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred eeeEeeccccccccccchhhhccC-ccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 777777766432211000000000 0000000 123689999999988755 47788899999999999997665544 4
Q ss_pred CCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCc
Q 002265 792 LGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQ 870 (945)
Q Consensus 792 l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~ 870 (945)
++.++ |+.|+++++. +..+... .+..+++|++|+++++. ++.+. |.
T Consensus 319 ~~~l~~L~~L~Ls~N~-l~~~~~~-------------------~~~~l~~L~~L~Ls~N~-l~~~~------------~~ 365 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNF-LGSIDSR-------------------MFENLDKLEVLDLSYNH-IRALG------------DQ 365 (455)
T ss_dssp TTTCTTCCEEECCSSC-CCEECGG-------------------GGTTCTTCCEEECCSSC-CCEEC------------TT
T ss_pred hcCcccCCEEECCCCc-cCCcChh-------------------HhcCcccCCEEECCCCc-ccccC------------hh
Confidence 77888 9999999875 4444322 23478999999999874 22221 21
Q ss_pred ccccCCCCCCCCCccceEeeccCcCCCCCCc-CCCCCCCccEEEEeCCcc
Q 002265 871 LPILEDHRTTDIPRLSSLRIWYCPKLKVLPD-YLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 871 l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~ 919 (945)
.+..+++|++|+|++| .++.+|. .+..+++|+.|++++|+.
T Consensus 366 -------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 366 -------SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp -------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -------hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 4566778999999998 6778875 457899999999998763
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=6.4e-23 Score=236.10 Aligned_cols=338 Identities=20% Similarity=0.224 Sum_probs=165.2
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.++.+.+..+++..++ .+..+++|++|+++++.. ..+.+ +.++++|++|+ +++|.+..+
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l------~~~~~--~~~l~~L~~L~------------l~~n~l~~~ 105 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL------TDITP--LKNLTKLVDIL------------MNNNQIADI 105 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCC------CCCGG--GTTCTTCCEEE------------CCSSCCCCC
T ss_pred cccEEecCCCCCccCc-chhhhcCCCEEECCCCcc------CCchh--hhccccCCEEE------------CCCCccccC
Confidence 4566666666665554 355667777777766652 12222 66667777777 444444444
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
+. ++.+++|++|++++|.+..+|. ++++++|++|++++|. +..+|. +..+++|++|+++++ +..++ .++++++
T Consensus 106 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~-~~~~l~~ 178 (466)
T 1o6v_A 106 TP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLK-PLANLTT 178 (466)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCG-GGTTCTT
T ss_pred hh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCch-hhccCCC
Confidence 44 5566666666666666665554 5666666666666655 444443 555566666655422 22222 2555555
Q ss_pred CCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCc
Q 002265 657 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKN 736 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 736 (945)
|+.|++..+.....+ ....+.+|+.|+++++ .+.. . . .+..+++|+.|+++.|.+...
T Consensus 179 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-~l~~------~---~--~~~~l~~L~~L~l~~n~l~~~--------- 236 (466)
T 1o6v_A 179 LERLDISSNKVSDIS-VLAKLTNLESLIATNN-QISD------I---T--PLGILTNLDELSLNGNQLKDI--------- 236 (466)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCC------C---G--GGGGCTTCCEEECCSSCCCCC---------
T ss_pred CCEEECcCCcCCCCh-hhccCCCCCEEEecCC-cccc------c---c--cccccCCCCEEECCCCCcccc---------
Confidence 555555554433221 1233444444444433 0100 0 0 133344555555554442210
Q ss_pred hhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCccc
Q 002265 737 EKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEF 815 (945)
Q Consensus 737 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~ 815 (945)
..+..+++|+.|++++|....++. +..+++|+.|++++|... .++.+..++ |+.|+++++. +..+.. +
T Consensus 237 -------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~ 305 (466)
T 1o6v_A 237 -------GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQ-LEDISP-I 305 (466)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CSCCGG-G
T ss_pred -------hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCc-ccCchh-h
Confidence 123334445555555444444332 444445555555444322 222244444 4444444432 111100 0
Q ss_pred cCCCCCCCCCCCCCCC--CCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccC
Q 002265 816 LGIEESSEDDPSSSSS--SSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYC 893 (945)
Q Consensus 816 ~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c 893 (945)
.....+...+...+.+ ...+..+++|++|++++|. ++.+ ..+..+++|+.|++.+|
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~---------------------~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDV---------------------SSLANLTNINWLSAGHN 363 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCC---------------------GGGTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCc---------------------hhhccCCCCCEEeCCCC
Confidence 0000000000000000 0002355566666665542 2211 13556778999999999
Q ss_pred cCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 894 PKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 894 ~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
+ +..++. +..+++|+.|++++|+.
T Consensus 364 ~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 364 Q-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp C-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred c-cCccch-hhcCCCCCEEeccCCcc
Confidence 4 555554 77899999999999864
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-22 Score=227.61 Aligned_cols=304 Identities=18% Similarity=0.137 Sum_probs=230.1
Q ss_pred CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc-cccccCccccccccccc
Q 002265 517 GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLNLSELG 595 (945)
Q Consensus 517 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 595 (945)
.+++++.|.+.++. +..+++..|..+++|++|+ ++++.+..+|. .++.+++|++|++++|.
T Consensus 43 ~l~~l~~l~l~~~~------l~~l~~~~~~~l~~L~~L~------------L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 43 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLN------------LNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp GGCCCSEEEEESCE------ESEECTHHHHHCCCCSEEE------------CTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCCceEEEecCCc------hhhCChhHhcccccCcEEE------------CCCCcccccChhhccCCCCcCEEECCCCC
Confidence 46789999998875 3455667788999999999 66777777764 78899999999999999
Q ss_pred ccccC-hhhhcCCcccEEEecCCCCccccCccc-ccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCC
Q 002265 596 IEILP-ETLCELYNLQKLDIRRCRNLRELPAGI-GKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSN 673 (945)
Q Consensus 596 i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~ 673 (945)
+..+| ..++++++|++|++++|. +..+|..+ .++++|++|++++|......|..++.+++|++|++..+.....+
T Consensus 105 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 105 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--
Confidence 98775 457999999999999987 88888774 78999999999998443333556899999999998887755432
Q ss_pred cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCcc
Q 002265 674 TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLE 753 (945)
Q Consensus 674 ~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 753 (945)
...++.|+.|+++++. + ..+....+|+.|+++.|.+...+ ...+++|+
T Consensus 182 ~~~l~~L~~L~l~~n~-l--------------~~~~~~~~L~~L~l~~n~l~~~~-----------------~~~~~~L~ 229 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNL-L--------------STLAIPIAVEELDASHNSINVVR-----------------GPVNVELT 229 (390)
T ss_dssp GGGCTTCSEEECCSSC-C--------------SEEECCSSCSEEECCSSCCCEEE-----------------CCCCSSCC
T ss_pred cccccccceeeccccc-c--------------cccCCCCcceEEECCCCeeeecc-----------------cccccccc
Confidence 4556777777776541 1 12334568999999988743211 12347899
Q ss_pred EEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCC-CCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCC
Q 002265 754 EFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLP-PLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSS 831 (945)
Q Consensus 754 ~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 831 (945)
.|+++++..... .++..+++|+.|++++|......| .+..++ |+.|+++++. +..++..
T Consensus 230 ~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------------- 290 (390)
T 3o6n_A 230 ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY----------------- 290 (390)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----------------
T ss_pred EEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----------------
Confidence 999999988774 678899999999999997655434 477788 9999999875 5444321
Q ss_pred CCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccE
Q 002265 832 SSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQK 911 (945)
Q Consensus 832 ~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~ 911 (945)
...+++|++|+++++ .++.++. .+..+++|+.|++.+| .+..+| +..+++|+.
T Consensus 291 ---~~~l~~L~~L~L~~n-~l~~~~~--------------------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~ 343 (390)
T 3o6n_A 291 ---GQPIPTLKVLDLSHN-HLLHVER--------------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKN 343 (390)
T ss_dssp ---SSCCTTCCEEECCSS-CCCCCGG--------------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSE
T ss_pred ---cCCCCCCCEEECCCC-cceecCc--------------------cccccCcCCEEECCCC-ccceeC--chhhccCCE
Confidence 236899999999997 3443332 2334566999999999 577786 667899999
Q ss_pred EEEeCCcc
Q 002265 912 LTIWGCPL 919 (945)
Q Consensus 912 L~l~~c~~ 919 (945)
|++++|+.
T Consensus 344 L~l~~N~~ 351 (390)
T 3o6n_A 344 LTLSHNDW 351 (390)
T ss_dssp EECCSSCE
T ss_pred EEcCCCCc
Confidence 99999975
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-22 Score=240.35 Aligned_cols=304 Identities=18% Similarity=0.141 Sum_probs=233.9
Q ss_pred CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc-cccccCccccccccccc
Q 002265 517 GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLNLSELG 595 (945)
Q Consensus 517 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 595 (945)
.+++++.|.+.++. +..+++.+|..+++|++|+ +++|.+..+|. .++.+.+|++|+|++|.
T Consensus 49 ~l~~l~~l~l~~~~------l~~lp~~~~~~l~~L~~L~------------L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 110 (597)
T 3oja_B 49 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLN------------LNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110 (597)
T ss_dssp GGCCCSEEEESSCE------ESEECTHHHHHCCCCSEEE------------CTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCceEEEeeCCC------CCCcCHHHHccCCCCcEEE------------CCCCCCCCCChHHhcCCCCCCEEECCCCc
Confidence 46788999998875 4456677789999999999 66777777764 78999999999999999
Q ss_pred ccccCh-hhhcCCcccEEEecCCCCccccCccc-ccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCC
Q 002265 596 IEILPE-TLCELYNLQKLDIRRCRNLRELPAGI-GKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSN 673 (945)
Q Consensus 596 i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~ 673 (945)
+..+|+ .++++++|++|+|++|. +..+|..+ +++++|++|++++|......|..++.+++|++|++..+.....+
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--
Confidence 997765 46999999999999997 88888774 89999999999999544444557999999999999888755432
Q ss_pred cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCcc
Q 002265 674 TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLE 753 (945)
Q Consensus 674 ~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 753 (945)
...++.|+.|+++++. + ..+....+|+.|++++|.+.... -..+++|+
T Consensus 188 ~~~l~~L~~L~l~~n~-l--------------~~l~~~~~L~~L~ls~n~l~~~~-----------------~~~~~~L~ 235 (597)
T 3oja_B 188 LSLIPSLFHANVSYNL-L--------------STLAIPIAVEELDASHNSINVVR-----------------GPVNVELT 235 (597)
T ss_dssp GGGCTTCSEEECCSSC-C--------------SEEECCTTCSEEECCSSCCCEEE-----------------CSCCSCCC
T ss_pred hhhhhhhhhhhcccCc-c--------------ccccCCchhheeeccCCcccccc-----------------cccCCCCC
Confidence 4567778887777541 1 12344568999999988743211 11246899
Q ss_pred EEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCC-CCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCC
Q 002265 754 EFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLP-PLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSS 831 (945)
Q Consensus 754 ~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 831 (945)
.|++++|.... +.++..+++|+.|+|++|......| .++.++ |+.|+|+++. +..++..
T Consensus 236 ~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~----------------- 296 (597)
T 3oja_B 236 ILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY----------------- 296 (597)
T ss_dssp EEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS-----------------
T ss_pred EEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc-----------------
Confidence 99999998876 6788999999999999997666544 477889 9999999875 5444321
Q ss_pred CCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccE
Q 002265 832 SSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQK 911 (945)
Q Consensus 832 ~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~ 911 (945)
...+|+|++|+|+++. +..+ |. .+..+++|+.|+|++| .+..+| +..+++|+.
T Consensus 297 ---~~~l~~L~~L~Ls~N~-l~~i-------------~~-------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~ 349 (597)
T 3oja_B 297 ---GQPIPTLKVLDLSHNH-LLHV-------------ER-------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKN 349 (597)
T ss_dssp ---SSCCTTCCEEECCSSC-CCCC-------------GG-------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSE
T ss_pred ---cccCCCCcEEECCCCC-CCcc-------------Cc-------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCE
Confidence 3468999999999974 3333 22 3344666999999999 577776 567899999
Q ss_pred EEEeCCcc
Q 002265 912 LTIWGCPL 919 (945)
Q Consensus 912 L~l~~c~~ 919 (945)
|++++||.
T Consensus 350 L~l~~N~~ 357 (597)
T 3oja_B 350 LTLSHNDW 357 (597)
T ss_dssp EECCSSCE
T ss_pred EEeeCCCC
Confidence 99999985
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.6e-22 Score=238.83 Aligned_cols=370 Identities=17% Similarity=0.132 Sum_probs=193.3
Q ss_pred EEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc-C
Q 002265 499 RHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-P 577 (945)
Q Consensus 499 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p 577 (945)
+++.+..+++..+|..+. ++|++|+++++. +..+.+..|.++++|++|+ +++|.+..+ |
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~ 93 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNS------ISELRMPDISFLSELRVLR------------LSHNRIRSLDF 93 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSC------CCCCCGGGTTTCTTCCEEE------------CCSCCCCEECT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCC------ccccChhhhccCCCccEEE------------CCCCCCCcCCH
Confidence 566666666666665443 677777777665 2233445567777777777 555555555 4
Q ss_pred ccccccCcccccccccccccccChhhhcCCcccEEEecCCCCcccc--CcccccccCCCeeecCCCCCCccCccCCCCCC
Q 002265 578 KNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLREL--PAGIGKLMNMRSLLNGETYSLKYMPIGISKLT 655 (945)
Q Consensus 578 ~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 655 (945)
..++.+++|++|+|++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..++
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~ 167 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVA 167 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGT
T ss_pred HHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--Cchhhhh
Confidence 4566677777777777777666665 66777777777766 4443 3566677777777776663 222 2344444
Q ss_pred CC--CcCCcccccC--CcC-CCCc--------------------------ccccccccCCCCCe----------------
Q 002265 656 SL--RTLDRFVVGG--GVD-GSNT--------------------------CRLESLKNLQLRGK---------------- 688 (945)
Q Consensus 656 ~L--~~L~~~~~~~--~~~-~~~~--------------------------~~l~~L~~L~L~~~---------------- 688 (945)
+| ++|++..+.. ... +... ..+.+|+.|+++++
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~ 247 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS
T ss_pred hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc
Confidence 44 6665555433 110 1111 11222333322221
Q ss_pred ------EEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCC-CCCc-----ccc---------------CchhHHH
Q 002265 689 ------CSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDG-EGEE-----GRR---------------KNEKDKQ 741 (945)
Q Consensus 689 ------l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~-----~~~---------------~~~~~~~ 741 (945)
+.+..+.-.......... .....+|+.|+++.|.+.+. +... ... .......
T Consensus 248 l~~L~~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 248 GPTLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp CSSCEEEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred cCcceEEEecCCcCcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 000000000000000000 01122555556655554311 1000 000 0000000
Q ss_pred HHh------------------cCCCCCCccEEEEEeeCCCC-CCcccccccCCcEEEEecCCCCCcCC----CCCccc-c
Q 002265 742 LLE------------------ALQPPLNLEEFGIVFYGGNI-FPKWLTSLTNLRELRLVSCVDCEHLP----PLGKLA-L 797 (945)
Q Consensus 742 ~~~------------------~l~~~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~-L 797 (945)
... ....+++|+.|++++|.... .|.++..+++|+.|++++|... .++ .++.++ |
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTC
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCC
Confidence 000 01567889999999988765 6788889999999999988543 333 267788 9
Q ss_pred ceEeeccccCceE-eCcc-ccCCCCCCCCCCCCCCCCCc-CcCC-CccceeeccCccccccccccccccccccCCCcccc
Q 002265 798 EKLELGNLKSVKR-LGNE-FLGIEESSEDDPSSSSSSSS-VTAF-PKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPI 873 (945)
Q Consensus 798 ~~L~l~~~~~L~~-l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~ 873 (945)
+.|+++++. +.. ++.. +.+...+...+...+.+... ...+ ++|++|+++++ +++ .+|.
T Consensus 406 ~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~-------------~ip~--- 467 (562)
T 3a79_B 406 ETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIM-------------SIPK--- 467 (562)
T ss_dssp CEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCC-------------CCCT---
T ss_pred CEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCc-------------ccCh---
Confidence 999998875 322 3322 11111111111111111100 0111 34444444443 121 2222
Q ss_pred cCCCCCCCCCccceEeeccCcCCCCCCcC-CCCCCCccEEEEeCCcc
Q 002265 874 LEDHRTTDIPRLSSLRIWYCPKLKVLPDY-LLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 874 ~~~~~l~~l~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~ 919 (945)
.+..+++|+.|++++| .++.+|.. +..+++|+.|++++||.
T Consensus 468 ----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 468 ----DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp ----TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred ----hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 3446778999999998 78899987 88899999999999874
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=5e-22 Score=245.48 Aligned_cols=279 Identities=19% Similarity=0.166 Sum_probs=151.9
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..+++|.++.+.+..+ +..+.++++|++|+++++.. ...+.+..|.++++|++|++++|.+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l------------ 85 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKI------------ 85 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCC------------
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcC------------
Confidence 56799999999988765 67889999999999998842 1233466789999999999555544
Q ss_pred ccc-CccccccCcccccccccccccc-cChh--hhcCCcccEEEecCCCCcccc--CcccccccCCCeeecCCCCCCccC
Q 002265 574 REI-PKNVRKLIHLKYLNLSELGIEI-LPET--LCELYNLQKLDIRRCRNLREL--PAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 574 ~~l-p~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
..+ |..++.+.+|++|+|++|.+.. +|.. ++++++|++|+|++|. +..+ +..++++++|++|++++|......
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 333 4445555555555555555542 3333 5555555555555554 2222 123455555555555554322223
Q ss_pred ccCCCCC--CCCCcCCcccccCCcC-CCCccccc------ccccCCCCCeEE---------------------Ec-----
Q 002265 648 PIGISKL--TSLRTLDRFVVGGGVD-GSNTCRLE------SLKNLQLRGKCS---------------------IE----- 692 (945)
Q Consensus 648 p~~i~~L--~~L~~L~~~~~~~~~~-~~~~~~l~------~L~~L~L~~~l~---------------------i~----- 692 (945)
|..++.+ ++|+.|++..+..... +.....+. .|+.|+++++.. +.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 3333333 3444444333321110 00011111 133333322200 00
Q ss_pred ------CC-------------CCC-------CChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcC
Q 002265 693 ------GL-------------SNV-------SHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL 746 (945)
Q Consensus 693 ------~l-------------~~~-------~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 746 (945)
.+ +.+ ..+.......+..+++|+.|+++.|.+... ....+
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------~~~~~ 310 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI--------------ADEAF 310 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE--------------CTTTT
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC--------------ChHHh
Confidence 00 000 001111223455667777777777664321 12345
Q ss_pred CCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCCCCCcCCC--CCccc-cceEeecccc
Q 002265 747 QPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCVDCEHLPP--LGKLA-LEKLELGNLK 806 (945)
Q Consensus 747 ~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~~L~l~~~~ 806 (945)
..+++|+.|++++|....+ |.++..+++|+.|++++|.. ..++. +..++ |+.|+++++.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCC
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCC
Confidence 5677888888888876554 66777888888888888753 33332 56677 8888877653
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.3e-22 Score=241.21 Aligned_cols=154 Identities=20% Similarity=0.178 Sum_probs=114.0
Q ss_pred CCcEEEEEeecCCCCCCCc-cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFPM-SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++++.++.+.+..++. .+.++++|++|+++++. +....+..|.++++|++|+ +++|.+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~------------L~~n~l 85 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLN------------LQHNEL 85 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEE------------CCSSCC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEE------------CCCCcc
Confidence 4678999999998877754 58889999999999876 2344567788999999999 666666
Q ss_pred cccCc-cccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCcc-C
Q 002265 574 REIPK-NVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPI-G 650 (945)
Q Consensus 574 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~ 650 (945)
..+|. .++.+.+|++|++++|.+..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++. .
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHH
Confidence 77776 4788888888888888887665 567888888888888887444455667788888888888773 343432 2
Q ss_pred --CCCCCCCCcCCcccccC
Q 002265 651 --ISKLTSLRTLDRFVVGG 667 (945)
Q Consensus 651 --i~~L~~L~~L~~~~~~~ 667 (945)
...+++|+.|++..+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp HGGGTTCEESEEECTTCCC
T ss_pred hhccccccccEEECCCCcc
Confidence 23456777777766653
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.3e-21 Score=223.32 Aligned_cols=268 Identities=18% Similarity=0.135 Sum_probs=133.8
Q ss_pred ccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCc
Q 002265 580 VRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRT 659 (945)
Q Consensus 580 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 659 (945)
++.+++|++|++++|.++.+| ++++++|++|++++|. +..+| ++.+++|++|++++| .+..+| ++.+++|+.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTE 152 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCE
Confidence 445555555555555555443 4555555555555554 44443 455555555555554 233332 445555555
Q ss_pred CCccccc-CCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchh
Q 002265 660 LDRFVVG-GGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEK 738 (945)
Q Consensus 660 L~~~~~~-~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 738 (945)
|++..+. .... ....+++|+.|+++++ .+..+ .+..+++|+.|+++.|.+...
T Consensus 153 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l------------~l~~l~~L~~L~l~~N~l~~~----------- 206 (457)
T 3bz5_A 153 LDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITEL------------DVSQNKLLNRLNCDTNNITKL----------- 206 (457)
T ss_dssp EECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCC------------CCTTCTTCCEEECCSSCCSCC-----------
T ss_pred EECCCCCccccc--ccccCCcCCEEECCCC-cccee------------ccccCCCCCEEECcCCcCCee-----------
Confidence 5544442 1111 1233444444444433 11110 144555666666666653221
Q ss_pred HHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCccccC
Q 002265 739 DKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEFLG 817 (945)
Q Consensus 739 ~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~ 817 (945)
.+..+++|+.|++++|....+| +..+++|+.|++++|.... +| .+.++ |+.|.+++. +|+.+......
T Consensus 207 ------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~ 275 (457)
T 3bz5_A 207 ------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQT-DLLEIDLTHNT 275 (457)
T ss_dssp ------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTC-CCSCCCCTTCT
T ss_pred ------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCC-CCCEEECCCCc
Confidence 2445566677777666666665 5566677777777664332 33 34455 555555432 23322211100
Q ss_pred CCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCC
Q 002265 818 IEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLK 897 (945)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~ 897 (945)
. ...+ ..+.+++|+.|++++|..+..++. ..+.|+..+ +..+++|+.|++++| .++
T Consensus 276 ~---------~~~~--~~~~l~~L~~L~Ls~n~~l~~l~~---------~~~~L~~L~---l~~~~~L~~L~L~~N-~l~ 331 (457)
T 3bz5_A 276 Q---------LIYF--QAEGCRKIKELDVTHNTQLYLLDC---------QAAGITELD---LSQNPKLVYLYLNNT-ELT 331 (457)
T ss_dssp T---------CCEE--ECTTCTTCCCCCCTTCTTCCEEEC---------TTCCCSCCC---CTTCTTCCEEECTTC-CCS
T ss_pred c---------CCcc--cccccccCCEEECCCCcccceecc---------CCCcceEec---hhhcccCCEEECCCC-ccc
Confidence 0 0001 124567777777777766655543 112222221 444566777777777 566
Q ss_pred CCCcCCCCCCCccEEEEeCCc
Q 002265 898 VLPDYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 898 ~lp~~~~~l~~L~~L~l~~c~ 918 (945)
.+| +.++++|+.|++++|.
T Consensus 332 ~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 332 ELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCC--CTTCTTCSEEECCSSC
T ss_pred ccc--cccCCcCcEEECCCCC
Confidence 664 6667777777776654
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=239.17 Aligned_cols=373 Identities=19% Similarity=0.126 Sum_probs=198.1
Q ss_pred EEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC-cc
Q 002265 501 LGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-KN 579 (945)
Q Consensus 501 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~~ 579 (945)
+.....+...+|..+ .+++++|+++++. +..+.+..|.++++|++|+ +++|.+..++ ..
T Consensus 12 ~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~------------Ls~n~i~~i~~~~ 71 (570)
T 2z63_A 12 YQCMELNFYKIPDNL--PFSTKNLDLSFNP------LRHLGSYSFFSFPELQVLD------------LSRCEIQTIEDGA 71 (570)
T ss_dssp EECCSSCCSSCCSSS--CSSCCEEECCSCC------CCEECTTTTTTCSSCCEEE------------CTTCCCCEECTTT
T ss_pred EEeCCCCccccCCCc--cccccEEEccCCc------cCccChhHhhCCCCceEEE------------CCCCcCCccCccc
Confidence 444555566677654 3589999999987 3344555689999999999 5555555553 34
Q ss_pred ccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCc-cCccCCCCCCC
Q 002265 580 VRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLK-YMPIGISKLTS 656 (945)
Q Consensus 580 i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~-~lp~~i~~L~~ 656 (945)
++++.+|++|+|++|.+..+| ..++++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence 666667777777776666544 456666777777776665 555554 46666677777776663222 35666666666
Q ss_pred CCcCCcccccCCcCC-CCccccccc----ccCCCCCeE------------------------------------------
Q 002265 657 LRTLDRFVVGGGVDG-SNTCRLESL----KNLQLRGKC------------------------------------------ 689 (945)
Q Consensus 657 L~~L~~~~~~~~~~~-~~~~~l~~L----~~L~L~~~l------------------------------------------ 689 (945)
|++|++..+.....+ .....+.+| ..|+++++.
T Consensus 151 L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 230 (570)
T 2z63_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230 (570)
T ss_dssp CCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEE
T ss_pred CCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCcccccee
Confidence 666666655433221 112222233 222222110
Q ss_pred --EEcCCCCCC---------------------------ChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHH
Q 002265 690 --SIEGLSNVS---------------------------HLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDK 740 (945)
Q Consensus 690 --~i~~l~~~~---------------------------~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 740 (945)
.+..+.... .+....+..+..+++|+.|+++.+.+..
T Consensus 231 ~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-------------- 296 (570)
T 2z63_A 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-------------- 296 (570)
T ss_dssp EEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--------------
T ss_pred eeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--------------
Confidence 000000000 0001111223445666666666555321
Q ss_pred HHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeC---cccc
Q 002265 741 QLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLG---NEFL 816 (945)
Q Consensus 741 ~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~---~~~~ 816 (945)
++..+... +|+.|++.++....+|. ..+++|+.|++++|......+. ..+| |+.|+++++. +...+ ..+.
T Consensus 297 -l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 370 (570)
T 2z63_A 297 -VKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDF 370 (570)
T ss_dssp -CCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHH
T ss_pred -hhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccccc
Confidence 12223334 66666666666665555 3566666666666654444433 5566 7777776553 22221 1111
Q ss_pred CCCCCCCCCCCCC---CCCCcCcCCCccceeeccCccccccccccccccccccCCCcc---cccCC-------CCCCCCC
Q 002265 817 GIEESSEDDPSSS---SSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQL---PILED-------HRTTDIP 883 (945)
Q Consensus 817 ~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l---~~~~~-------~~l~~l~ 883 (945)
....+...+...+ ..+..+..+++|++|+++++. +...... .....++.| .+.++ ..+..++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEF----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTS----CTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccch----hhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 1222222212111 112224456666666666543 2111100 011222222 22222 2456678
Q ss_pred ccceEeeccCcCC-CCCCcCCCCCCCccEEEEeCCcc
Q 002265 884 RLSSLRIWYCPKL-KVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 884 ~L~~L~l~~c~~L-~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
+|+.|++.+|... ..+|..+..+++|+.|++++|..
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 8999999888544 36888888889999999988853
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=228.99 Aligned_cols=149 Identities=22% Similarity=0.214 Sum_probs=110.6
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc-Cc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-PK 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p~ 578 (945)
.+.....++..+|..+ .++++.|+++++. +..+.+..|.++++|++|+ +++|.+..+ |.
T Consensus 15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~------------L~~n~i~~~~~~ 74 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNR------IKTLNQDEFASFPHLEELE------------LNENIVSAVEPG 74 (477)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEE------------CTTSCCCEECTT
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEECCCCc------cceECHhHccCCCCCCEEE------------CCCCccCEeChh
Confidence 4555556666667654 3588889988876 3344566688889999999 666666666 66
Q ss_pred cccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCC
Q 002265 579 NVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSL 657 (945)
Q Consensus 579 ~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 657 (945)
.++++++|++|+|++|.+..+|.. ++++++|++|+|++|......|..+.++++|++|++++|......|..++.+++|
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 788889999999999988888764 6888999999999888444456678889999999998885444445678888888
Q ss_pred CcCCcccccCC
Q 002265 658 RTLDRFVVGGG 668 (945)
Q Consensus 658 ~~L~~~~~~~~ 668 (945)
++|++..+...
T Consensus 155 ~~L~l~~n~l~ 165 (477)
T 2id5_A 155 EQLTLEKCNLT 165 (477)
T ss_dssp CEEEEESCCCS
T ss_pred CEEECCCCcCc
Confidence 88877665433
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=3.7e-22 Score=235.41 Aligned_cols=383 Identities=19% Similarity=0.165 Sum_probs=236.3
Q ss_pred EeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC-ccc
Q 002265 502 GLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-KNV 580 (945)
Q Consensus 502 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~~i 580 (945)
+...+++..+|..+. ++|++|+++++. +..+.+..|.++++|++|+ +++|.+..+| ..+
T Consensus 11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~------------Ls~n~i~~~~~~~~ 70 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT--AAMKSLDLSFNK------ITYIGHGDLRACANLQVLI------------LKSSRINTIEGDAF 70 (549)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECCSSC------CCEECSSTTSSCTTCCEEE------------CTTSCCCEECTTTT
T ss_pred ECCCCccccccccCC--CCccEEECcCCc------cCccChhhhhcCCcccEEE------------CCCCCcCccChhhc
Confidence 444556677777653 799999999987 3344566689999999999 6677777765 679
Q ss_pred cccCcccccccccccccccChh-hhcCCcccEEEecCCCCcc--ccCcccccccCCCeeecCCCCCCccCc-cCCCCCCC
Q 002265 581 RKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLR--ELPAGIGKLMNMRSLLNGETYSLKYMP-IGISKLTS 656 (945)
Q Consensus 581 ~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~ 656 (945)
+.+.+|++|++++|.+..+|.. ++++++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..++.+++
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 9999999999999999988766 9999999999999998 65 457789999999999999997677776 47999999
Q ss_pred CCcCCcccccCCc-CCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccc--
Q 002265 657 LRTLDRFVVGGGV-DGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGR-- 733 (945)
Q Consensus 657 L~~L~~~~~~~~~-~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-- 733 (945)
|++|++..+.... .+.....+.+|+.|+++++. ...... ..+..+++|+.|+++.|.+.+.......
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 219 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-------SAFLLE---IFADILSSVRYLELRDTNLARFQFSPLPVD 219 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-------STTHHH---HHHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCc-------ccccch---hhHhhcccccEEEccCCccccccccccchh
Confidence 9999998887543 34445566667766654331 011111 1123355566666665554332100000
Q ss_pred ------c---------CchhHHHHHhcC----------------------------------------------------
Q 002265 734 ------R---------KNEKDKQLLEAL---------------------------------------------------- 746 (945)
Q Consensus 734 ------~---------~~~~~~~~~~~l---------------------------------------------------- 746 (945)
. .......+...+
T Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 299 (549)
T 2z81_A 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299 (549)
T ss_dssp CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS
T ss_pred hhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhc
Confidence 0 000000110000
Q ss_pred -------CCCCCccEEEEEeeCCCCCCccc-ccccCCcEEEEecCCCCCcCC----CCCccc-cceEeeccccCceEeC-
Q 002265 747 -------QPPLNLEEFGIVFYGGNIFPKWL-TSLTNLRELRLVSCVDCEHLP----PLGKLA-LEKLELGNLKSVKRLG- 812 (945)
Q Consensus 747 -------~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~l~----~l~~l~-L~~L~l~~~~~L~~l~- 812 (945)
....+|+.|.+.++....+|.++ ..+++|+.|++++|...+.+| .++.++ |+.|+++++. ++.++
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 378 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQK 378 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHH
T ss_pred ccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-cccccc
Confidence 11246777777777777778776 478899999999887655432 256677 8888887764 33321
Q ss_pred --ccccCCCCCCCCCCC---CCCCCCcCcCCCccceeeccCcccccccccccc--------cccc----ccCCCccc---
Q 002265 813 --NEFLGIEESSEDDPS---SSSSSSSVTAFPKLKSLEIKGLDELEEWNYRIT--------RKEN----VSIMPQLP--- 872 (945)
Q Consensus 813 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~--------~~~~----~~~lp~l~--- 872 (945)
..+.....+...+.. -..+|..+..+++|++|+++++. ++.++.... .... ...+|.|.
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred chhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 112222222222111 12344455566777777777653 322221100 0000 01223222
Q ss_pred ccCC-----CCCCCCCccceEeeccCcCCCCCC-cCCCCCCCccEEEEeCCc
Q 002265 873 ILED-----HRTTDIPRLSSLRIWYCPKLKVLP-DYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 873 ~~~~-----~~l~~l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~ 918 (945)
+.++ +....+++|+.|+|++| .++.+| ..+..+++|+.|++++|+
T Consensus 458 Ls~N~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 458 ISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSSCCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 1111 11234567788888877 455554 446778888888888776
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=5.7e-22 Score=219.10 Aligned_cols=279 Identities=19% Similarity=0.186 Sum_probs=195.7
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
...++++.+..+.+..++. +..+++|++|++.++.. .. ++ .+..+++|++|+ +++|.+.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i------~~-~~-~~~~l~~L~~L~------------l~~n~i~ 123 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI------TD-IS-ALQNLTNLRELY------------LNEDNIS 123 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC------CC-CG-GGTTCTTCSEEE------------CTTSCCC
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc------cC-ch-HHcCCCcCCEEE------------CcCCccc
Confidence 5679999999998888766 88999999999999863 12 23 388999999999 6667777
Q ss_pred ccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCC
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKL 654 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 654 (945)
.+|. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++| .+..++. +..+
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l 198 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASL 198 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGC
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCC
Confidence 7766 889999999999999766555669999999999999998 777776 899999999999998 5566654 6777
Q ss_pred CCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcccc
Q 002265 655 TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRR 734 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 734 (945)
++|+.|++..+.....+. +..+++|+.|++++|.+...
T Consensus 199 ~~L~~L~l~~n~l~~~~~-----------------------------------~~~~~~L~~L~l~~n~l~~~------- 236 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP-----------------------------------VANMTRLNSLKIGNNKITDL------- 236 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-----------------------------------GGGCTTCCEEECCSSCCCCC-------
T ss_pred CccceeecccCCCCCCch-----------------------------------hhcCCcCCEEEccCCccCCC-------
Confidence 777777765544322111 33445566666665553221
Q ss_pred CchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCc
Q 002265 735 KNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGN 813 (945)
Q Consensus 735 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~ 813 (945)
..+..+++|+.|++++|....+ ..+..+++|+.|++++|. +..++.+..++ |+.|++++|. +.....
T Consensus 237 ---------~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 237 ---------SPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp ---------GGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred ---------cchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCc-CCCcCh
Confidence 0144566677777777666554 346677788888887774 34456666777 8888887764 222111
Q ss_pred cccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccC
Q 002265 814 EFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYC 893 (945)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c 893 (945)
..+..+++|++|++++|+ ++.+. . +..+++|+.|++.+|
T Consensus 305 -------------------~~l~~l~~L~~L~L~~n~-l~~~~-------~--------------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 305 -------------------EVIGGLTNLTTLFLSQNH-ITDIR-------P--------------LASLSKMDSADFANQ 343 (347)
T ss_dssp -------------------HHHHTCTTCSEEECCSSS-CCCCG-------G--------------GGGCTTCSEESSSCC
T ss_pred -------------------hHhhccccCCEEEccCCc-ccccc-------C--------------hhhhhccceeehhhh
Confidence 113467888888888875 33221 1 333455888888887
Q ss_pred c
Q 002265 894 P 894 (945)
Q Consensus 894 ~ 894 (945)
+
T Consensus 344 ~ 344 (347)
T 4fmz_A 344 V 344 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=236.93 Aligned_cols=96 Identities=22% Similarity=0.151 Sum_probs=51.4
Q ss_pred CcEEEEEeecCC-CCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeecccccccc---------
Q 002265 496 VKVRHLGLNFEG-GDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFH--------- 564 (945)
Q Consensus 496 ~~~r~l~l~~~~-~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~--------- 564 (945)
..++.|.+..+. ...+ |..+.++++|++|+++++. +....|..|.++++|++|++++|.+...
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~------l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK------IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC------CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc------CcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 456666666653 2233 4556666667777666655 2233455566666666666555554320
Q ss_pred -----ccccCCCcccccC--ccccccCccccccccccccc
Q 002265 565 -----PFHLDPNSIREIP--KNVRKLIHLKYLNLSELGIE 597 (945)
Q Consensus 565 -----~l~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~ 597 (945)
.+++++|.+..++ ..++++++|++|+|++|.+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 0334455544432 34556666666666665554
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=4.1e-21 Score=220.74 Aligned_cols=345 Identities=14% Similarity=0.145 Sum_probs=239.5
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc-cc-C
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR-EI-P 577 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~-~l-p 577 (945)
.+.....++..+|. + .++|++|+++++. +..+.+..|.++++|++|+ +++|.+. .+ |
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~------------L~~n~~~~~i~~ 72 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNS------IAELNETSFSRLQDLQFLK------------VEQQTPGLVIRN 72 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSC------CCEECTTTTSSCTTCCEEE------------CCCCSTTCEECT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCc------cCcCChhHhccCccccEEE------------CcCCcccceECc
Confidence 34555566667776 2 3789999999987 3355567799999999999 5555554 45 4
Q ss_pred ccccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCcc--cccccCCCeeecCCCCCCccCccC-CCC
Q 002265 578 KNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPAG--IGKLMNMRSLLNGETYSLKYMPIG-ISK 653 (945)
Q Consensus 578 ~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~--i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 653 (945)
..++.+++|++|+|++|.+..+ |..++++++|++|++++|.....+|.. +.++++|++|++++|......|.. +++
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 5689999999999999999865 788999999999999999843445555 889999999999999544444655 899
Q ss_pred CCCCCcCCcccccCCcCC-CCcccc--cccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCC
Q 002265 654 LTSLRTLDRFVVGGGVDG-SNTCRL--ESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGE 730 (945)
Q Consensus 654 L~~L~~L~~~~~~~~~~~-~~~~~l--~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 730 (945)
+++|++|++..+...... .....+ ..|+.|+++++ .+..++.. .+.......+..+++|+.|+++.|.+..
T Consensus 153 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---- 226 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEY-WLGWEKCGNPFKNTSITTLDLSGNGFKE---- 226 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTT-CTTHHHHCCTTTTCEEEEEECTTSCCCH----
T ss_pred CCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchh-hccccccccccccceeeeEecCCCcccc----
Confidence 999999999888754432 222233 46666666643 23222211 1112222345566889999999887421
Q ss_pred ccccCchhHHHHHhcCCCCCCccEEEEEeeCCCC-------C----Ccccc--cccCCcEEEEecCCCCCcCCC-CCccc
Q 002265 731 EGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNI-------F----PKWLT--SLTNLRELRLVSCVDCEHLPP-LGKLA 796 (945)
Q Consensus 731 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------l----p~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~ 796 (945)
............++|+.|.++++.... + +..+. ..++|+.|++++|......|. ++.++
T Consensus 227 -------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 227 -------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp -------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred -------cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 011112222334789999998764321 1 11122 347899999999987665554 77888
Q ss_pred -cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccC
Q 002265 797 -LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILE 875 (945)
Q Consensus 797 -L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~ 875 (945)
|+.|+++++. +..+.. ..+..+++|++|+++++. +..+. |
T Consensus 300 ~L~~L~Ls~n~-l~~~~~-------------------~~~~~l~~L~~L~Ls~N~-l~~~~------------~------ 340 (455)
T 3v47_A 300 DLEQLTLAQNE-INKIDD-------------------NAFWGLTHLLKLNLSQNF-LGSID------------S------ 340 (455)
T ss_dssp TCCEEECTTSC-CCEECT-------------------TTTTTCTTCCEEECCSSC-CCEEC------------G------
T ss_pred CCCEEECCCCc-ccccCh-------------------hHhcCcccCCEEECCCCc-cCCcC------------h------
Confidence 9999999876 444322 124578999999999973 33221 1
Q ss_pred CCCCCCCCccceEeeccCcCCCCC-CcCCCCCCCccEEEEeCCcc
Q 002265 876 DHRTTDIPRLSSLRIWYCPKLKVL-PDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 876 ~~~l~~l~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~ 919 (945)
..+..+++|+.|+|++|. +..+ |..+..+++|+.|++++|..
T Consensus 341 -~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 341 -RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp -GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCcc
Confidence 134556779999999994 5554 77888999999999999863
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=5.4e-21 Score=231.57 Aligned_cols=375 Identities=16% Similarity=0.078 Sum_probs=238.0
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc-Cc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-PK 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p~ 578 (945)
.+.++..++..+|..+. +++++|+++++. +..+.+..|.++++|++|+ +++|.+..+ |.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~------------Ls~n~l~~~~~~ 67 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLD------------VGFNTISKLEPE 67 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEE------------CCSSCCCCCCTT
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEE------------CCCCccCccCHH
Confidence 45666667777776654 799999999987 3344566789999999999 666666665 56
Q ss_pred cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 579 NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 579 ~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
.++++++|++|+|++|.+..+|. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 78999999999999999999987 59999999999999998 66666 57899999999999999655555677899999
Q ss_pred CCcCCcccccCCcCCCC---cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccC----------------------
Q 002265 657 LRTLDRFVVGGGVDGSN---TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNK---------------------- 711 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~---~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~---------------------- 711 (945)
|++|++..+.....+.. ...+..|+.|+++++ .+.... +..+..+
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~---------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFS---------PGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBC---------TTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccC---------hhhhhhhhhhhhhhccccccChhhHHHHH
Confidence 99999988765443322 123467888888765 222111 1122222
Q ss_pred -----CCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCC--CCccEEEEEeeCCCCC-CcccccccCCcEEEEecC
Q 002265 712 -----KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPP--LNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSC 783 (945)
Q Consensus 712 -----~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 783 (945)
++|+.|++++|.+.+.. +..+..+ ++|+.|++++|....+ |.++..+++|+.|++++|
T Consensus 217 ~~l~~~~L~~L~L~~n~l~~~~--------------~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 217 LELANTSIRNLSLSNSQLSTTS--------------NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp HHHTTSCCCEEECTTSCCCEEC--------------TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred HHhhhccccEEEccCCcccccC--------------hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence 45666666655432110 1122222 3488888877766544 456777788888888877
Q ss_pred CCCCcCC-CCCccc-cceEeeccccC--------ceEeCc-cccCCCCCCCCCCCCC----CCCCcCcCCCccceeeccC
Q 002265 784 VDCEHLP-PLGKLA-LEKLELGNLKS--------VKRLGN-EFLGIEESSEDDPSSS----SSSSSVTAFPKLKSLEIKG 848 (945)
Q Consensus 784 ~~~~~l~-~l~~l~-L~~L~l~~~~~--------L~~l~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~L~~ 848 (945)
......| .++.++ |+.|+++++.. +..+.. .+.....+...+...+ ..+..+..+++|++|++++
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 6554444 366677 77777764321 111111 1111111111111111 1223456677888888876
Q ss_pred cc-ccccccccccccccccCCCcccc-------cCCCCCCCCCccceEeeccCcCCCCCC-cCCCCCCCccEEEEeCCcc
Q 002265 849 LD-ELEEWNYRITRKENVSIMPQLPI-------LEDHRTTDIPRLSSLRIWYCPKLKVLP-DYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 849 ~~-~L~~~~~~~~~~~~~~~lp~l~~-------~~~~~l~~l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~ 919 (945)
+. .+..++...........+..|.+ .....+..+++|+.|++++|.....+| ..+.++++|++|++++|..
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 53 12111110000000001111111 112356678899999999996555676 5677899999999999863
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=2.7e-21 Score=220.48 Aligned_cols=343 Identities=17% Similarity=0.094 Sum_probs=136.5
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCc-------------cceEeeccccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVC-------------LRALVIRQSSL 561 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~ 561 (945)
...++.+.++.+.+..+|..+.++++|++|+++++. +...+|..++++++ |+.|+++++.+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~------~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE------WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------CCHHHHHHHHHH------HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc------ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 345777888888887888888888888888887754 12223333444443 36666666655
Q ss_pred cccc--------cccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCC
Q 002265 562 YFHP--------FHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM 633 (945)
Q Consensus 562 ~~~~--------l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L 633 (945)
...+ +++++|.+..+|.. +.+|++|++++|.+..+|.. .++|++|++++|. +..+| .++++++|
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFL 155 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTC
T ss_pred ccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCC
Confidence 4422 44555555555543 24445555555544443321 1345555555544 44444 24555555
Q ss_pred CeeecCCCCCCccCcc-------------------CCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCC
Q 002265 634 RSLLNGETYSLKYMPI-------------------GISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGL 694 (945)
Q Consensus 634 ~~L~l~~~~~l~~lp~-------------------~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l 694 (945)
++|++++| .+..+|. .++.+++|+.|++..+.....+.. ..+|+.|+++++ .+..+
T Consensus 156 ~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n-~l~~l 230 (454)
T 1jl5_A 156 KIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN-ILEEL 230 (454)
T ss_dssp CEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSSC
T ss_pred CEEECCCC-cCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC-cCCcc
Confidence 55555544 2333443 344444444444444433222111 123444444432 11111
Q ss_pred CCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccC
Q 002265 695 SNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTN 774 (945)
Q Consensus 695 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 774 (945)
+ .+..+++|+.|+++.|.+...+ ..+++|+.|++++|....+|.+ +++
T Consensus 231 ----------p-~~~~l~~L~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~N~l~~l~~~---~~~ 278 (454)
T 1jl5_A 231 ----------P-ELQNLPFLTTIYADNNLLKTLP------------------DLPPSLEALNVRDNYLTDLPEL---PQS 278 (454)
T ss_dssp ----------C-CCTTCTTCCEEECCSSCCSSCC------------------SCCTTCCEEECCSSCCSCCCCC---CTT
T ss_pred ----------c-ccCCCCCCCEEECCCCcCCccc------------------ccccccCEEECCCCcccccCcc---cCc
Confidence 1 1445556666666655532211 0124566666666665555543 256
Q ss_pred CcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccc
Q 002265 775 LRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELE 853 (945)
Q Consensus 775 L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 853 (945)
|+.|++++|.. ..+|.+ .+ |+.|+++++. +..++... ..+...+...+.+..--..+++|++|+++++. ++
T Consensus 279 L~~L~ls~N~l-~~l~~~--~~~L~~L~l~~N~-l~~i~~~~---~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~-l~ 350 (454)
T 1jl5_A 279 LTFLDVSENIF-SGLSEL--PPNLYYLNASSNE-IRSLCDLP---PSLEELNVSNNKLIELPALPPRLERLIASFNH-LA 350 (454)
T ss_dssp CCEEECCSSCC-SEESCC--CTTCCEEECCSSC-CSEECCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CS
T ss_pred CCEEECcCCcc-CcccCc--CCcCCEEECcCCc-CCcccCCc---CcCCEEECCCCccccccccCCcCCEEECCCCc-cc
Confidence 66666666542 222221 13 6666665543 22221100 00000111111100000123445555554431 21
Q ss_pred cccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCC--CCCcCCCCC-------------CCccEEEEeCCc
Q 002265 854 EWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLK--VLPDYLLRT-------------TTLQKLTIWGCP 918 (945)
Q Consensus 854 ~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~--~lp~~~~~l-------------~~L~~L~l~~c~ 918 (945)
. +|. .+++|+.|++++|+... .+|..+.++ ++|+.|++++|+
T Consensus 351 ~-------------lp~----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 351 E-------------VPE----------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp C-------------CCC----------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred c-------------ccc----------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 1 111 24568888888885444 566666666 778888888876
Q ss_pred c
Q 002265 919 L 919 (945)
Q Consensus 919 ~ 919 (945)
.
T Consensus 408 l 408 (454)
T 1jl5_A 408 L 408 (454)
T ss_dssp -
T ss_pred C
Confidence 4
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.3e-21 Score=208.69 Aligned_cols=232 Identities=22% Similarity=0.295 Sum_probs=168.1
Q ss_pred cCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcc
Q 002265 547 KLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAG 626 (945)
Q Consensus 547 ~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~ 626 (945)
....++.|+ ++++.+..+|..++++.+|++|+|++|.+..+|..++++++|++|+|++|. +..+|..
T Consensus 79 ~~~~l~~L~------------L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALE------------LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS 145 (328)
T ss_dssp TSTTCCEEE------------EESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG
T ss_pred cccceeEEE------------ccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH
Confidence 457899999 777777889999999999999999999999999999999999999999997 7799999
Q ss_pred cccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhc
Q 002265 627 IGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERS 706 (945)
Q Consensus 627 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~ 706 (945)
++++++|++|++++|..+..+|..++.. .+. .
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~-----------------------------~~~-------------------~ 177 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLAST-----------------------------DAS-------------------G 177 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEE-----------------------------C-C-------------------C
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhc-----------------------------cch-------------------h
Confidence 9999999999999987777766543320 000 0
Q ss_pred ccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCC
Q 002265 707 QLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDC 786 (945)
Q Consensus 707 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 786 (945)
.+.++++|+.|++++|. ...+|.++..+++|+.|++++|...
T Consensus 178 ~~~~l~~L~~L~L~~n~--------------------------------------l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTG--------------------------------------IRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp CEEESTTCCEEEEEEEC--------------------------------------CCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred hhccCCCCCEEECcCCC--------------------------------------cCcchHhhcCCCCCCEEEccCCCCC
Confidence 12334455555555544 3445666666666666666666544
Q ss_pred CcCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccc
Q 002265 787 EHLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENV 865 (945)
Q Consensus 787 ~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~ 865 (945)
...+.++.++ |+.|++++|.....++ ..+..+++|++|+|++|..+..++
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p--------------------~~~~~l~~L~~L~L~~n~~~~~~p--------- 270 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYP--------------------PIFGGRAPLKRLILKDCSNLLTLP--------- 270 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCC--------------------CCTTCCCCCCEEECTTCTTCCBCC---------
T ss_pred cCchhhccCCCCCEEECcCCcchhhhH--------------------HHhcCCCCCCEEECCCCCchhhcc---------
Confidence 3333455566 6666666655333222 224578889999998876544433
Q ss_pred cCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCC
Q 002265 866 SIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGC 917 (945)
Q Consensus 866 ~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 917 (945)
. .+..+++|+.|+|++|+.++.+|..+.++++|+.+++...
T Consensus 271 ----~-------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 271 ----L-------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ----T-------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ----h-------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 2 3455666999999999999999999999999999988754
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.7e-21 Score=223.55 Aligned_cols=342 Identities=14% Similarity=0.071 Sum_probs=203.2
Q ss_pred CcEEEEEeecCCCCCCC-ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 496 VKVRHLGLNFEGGDSFP-MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
..++++.++.+.+..++ ..+..+++|++|+++++. +..+.|..|.++++|++|+ +++|.+.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~------------Ls~N~l~ 82 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLD------------LSHNKLV 82 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEE------------CCSSCCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEe------------cCCCcee
Confidence 57888888888887665 577888999999998876 3355567788899999999 6666666
Q ss_pred ccCccccccCcccccccccccccc--cChhhhcCCcccEEEecCCCCccccCcccccccCC--CeeecCCCCC--CccCc
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEI--LPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM--RSLLNGETYS--LKYMP 648 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L--~~L~l~~~~~--l~~lp 648 (945)
.+|.. .+.+|++|++++|.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccc
Confidence 77765 67888888888888774 56778888888888888776 433 345666666 7777776643 23334
Q ss_pred cCCCC--------------------------CCCCCcCCcccccCCc-------CCCCccc-------------------
Q 002265 649 IGISK--------------------------LTSLRTLDRFVVGGGV-------DGSNTCR------------------- 676 (945)
Q Consensus 649 ~~i~~--------------------------L~~L~~L~~~~~~~~~-------~~~~~~~------------------- 676 (945)
..+.. +++|+.|++..+.... .......
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH
T ss_pred ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH
Confidence 43333 4444444444331000 0000000
Q ss_pred --------ccccccCCCCCeEEEcCCCCCC---------------------Chh-hhh--------------------hc
Q 002265 677 --------LESLKNLQLRGKCSIEGLSNVS---------------------HLD-EAE--------------------RS 706 (945)
Q Consensus 677 --------l~~L~~L~L~~~l~i~~l~~~~---------------------~~~-~~~--------------------~~ 706 (945)
...|+.|+++++..-..++..- .+. ... ..
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence 1123333333221110111000 000 000 00
Q ss_pred c-cccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCC---CCcccccccCCcEEEEec
Q 002265 707 Q-LYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNI---FPKWLTSLTNLRELRLVS 782 (945)
Q Consensus 707 ~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~ 782 (945)
. ...+++|+.|+++.|.+.+ ..+..+..+++|+.|++++|.... +|.++..+++|+.|++++
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTD--------------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCT--------------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred cchhhCCcccEEEeECCccCh--------------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 0 1577889999999887543 123456677889999998888764 456677888999999988
Q ss_pred CCCCCcCCC--CCccc-cceEeeccccCceEeCccccCCCCCCCCCC---CCCCCCCcCcCCCccceeeccCcccccccc
Q 002265 783 CVDCEHLPP--LGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDP---SSSSSSSSVTAFPKLKSLEIKGLDELEEWN 856 (945)
Q Consensus 783 ~~~~~~l~~--l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~ 856 (945)
|.....+|. +..++ |+.|+++++.--..++..+. ..+...+. ....+|..+..+++|++|+++++. ++.+
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l- 459 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSV- 459 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC-
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCcc-
Confidence 876654653 56677 88888887741111111100 01111111 112344445567777777777752 3322
Q ss_pred ccccccccccCCCcccccCCCCCCCCCccceEeeccCcCC
Q 002265 857 YRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKL 896 (945)
Q Consensus 857 ~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L 896 (945)
|. ..+..+++|+.|++.+|+..
T Consensus 460 ------------~~------~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 460 ------------PD------GIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ------------CT------TTTTTCTTCCEEECCSSCBC
T ss_pred ------------CH------HHhccCCcccEEECcCCCCc
Confidence 22 12556778999999999643
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.6e-21 Score=217.45 Aligned_cols=282 Identities=19% Similarity=0.191 Sum_probs=221.7
Q ss_pred cCCccceEeeccccccccccccCCCcccccCcc-ccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccC
Q 002265 547 KLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN-VRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 547 ~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
.+.+|++|+ +.++.+..+|.. +..+++|++|++++|.+..+|. .++++++|++|++++|. +..+|
T Consensus 43 ~l~~l~~l~------------l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVT------------FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLP 109 (390)
T ss_dssp GGCCCSEEE------------EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred ccCCceEEE------------ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCC
Confidence 357899999 777778889876 5889999999999999997765 89999999999999998 66665
Q ss_pred -cccccccCCCeeecCCCCCCccCccC-CCCCCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCCCCChh
Q 002265 625 -AGIGKLMNMRSLLNGETYSLKYMPIG-ISKLTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHLD 701 (945)
Q Consensus 625 -~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~ 701 (945)
..++++++|++|++++| .+..+|.. ++.+++|++|++..+.....+ .....+++|+.|+++++ .+..
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-------- 179 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTH-------- 179 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSB--------
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCc--------
Confidence 55899999999999998 67788877 489999999999988765543 34567788888888765 1111
Q ss_pred hhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEe
Q 002265 702 EAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLV 781 (945)
Q Consensus 702 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 781 (945)
..+..+++|+.|+++.|.+. .+..+++|+.|+++++....+|.. .+++|+.|+++
T Consensus 180 ----~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~ 234 (390)
T 3o6n_A 180 ----VDLSLIPSLFHANVSYNLLS-------------------TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ 234 (390)
T ss_dssp ----CCGGGCTTCSEEECCSSCCS-------------------EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECC
T ss_pred ----cccccccccceeeccccccc-------------------ccCCCCcceEEECCCCeeeecccc--ccccccEEECC
Confidence 13556789999999988632 344567899999999988776654 35899999999
Q ss_pred cCCCCCcCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcccccccccccc
Q 002265 782 SCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRIT 860 (945)
Q Consensus 782 ~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~ 860 (945)
+|.. ...+.++.++ |+.|+++++. +..+.. ..+..+++|++|+++++. ++.++.
T Consensus 235 ~n~l-~~~~~l~~l~~L~~L~Ls~n~-l~~~~~-------------------~~~~~l~~L~~L~L~~n~-l~~~~~--- 289 (390)
T 3o6n_A 235 HNNL-TDTAWLLNYPGLVEVDLSYNE-LEKIMY-------------------HPFVKMQRLERLYISNNR-LVALNL--- 289 (390)
T ss_dssp SSCC-CCCGGGGGCTTCSEEECCSSC-CCEEES-------------------GGGTTCSSCCEEECCSSC-CCEEEC---
T ss_pred CCCC-cccHHHcCCCCccEEECCCCc-CCCcCh-------------------hHccccccCCEEECCCCc-CcccCc---
Confidence 9964 4457788899 9999999875 443321 124578999999999863 433321
Q ss_pred ccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 861 RKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 861 ~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
.+..+|+|+.|++++| .+..+|..+..+++|+.|++++|+.
T Consensus 290 -----------------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 290 -----------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp -----------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred -----------------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc
Confidence 2345666999999999 7889998888899999999999974
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.3e-20 Score=216.72 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=187.4
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
...++++.+..+.+..++. +..+++|++|.+.++.. ....+ +.++++|++|+ +++|.+.
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l------~~~~~--~~~l~~L~~L~------------L~~n~l~ 125 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI------ADITP--LANLTNLTGLT------------LFNNQIT 125 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC------CCCGG--GTTCTTCCEEE------------CCSSCCC
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc------ccChh--hcCCCCCCEEE------------CCCCCCC
Confidence 4578899999988887766 88999999999988762 23233 88899999999 5555566
Q ss_pred ccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCC
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKL 654 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 654 (945)
.+|. ++.+++|++|++++|.+..+|. ++++++|++|+++++ +..++. +.++++|++|++++| .+..++ .+..+
T Consensus 126 ~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l 198 (466)
T 1o6v_A 126 DIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSN-KVSDIS-VLAKL 198 (466)
T ss_dssp CCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGC
T ss_pred CChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCC-cCCCCh-hhccC
Confidence 6654 7788888888888888777653 777777777777532 344443 667777777777766 344443 36666
Q ss_pred CCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcccc
Q 002265 655 TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRR 734 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 734 (945)
++|+.|++..+....... ...+.+|+.|+++++ .+..+ ..+..+++|+.|+++.|.+...
T Consensus 199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~-----------~~l~~l~~L~~L~l~~n~l~~~------- 258 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDI-----------GTLASLTNLTDLDLANNQISNL------- 258 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCC-----------GGGGGCTTCSEEECCSSCCCCC-------
T ss_pred CCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccc-----------hhhhcCCCCCEEECCCCccccc-------
Confidence 777777766655433222 334556666665543 11111 1244555666666665553221
Q ss_pred CchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCc
Q 002265 735 KNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGN 813 (945)
Q Consensus 735 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~ 813 (945)
..+..+++|+.|++++|....+|. +..+++|+.|++++|. +..++.++.++ |+.|++++|. +..+..
T Consensus 259 ---------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 326 (466)
T 1o6v_A 259 ---------APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN-ISDISP 326 (466)
T ss_dssp ---------GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-CSCCGG
T ss_pred ---------hhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-CCCchh
Confidence 013344555555555555444443 4455555555555553 22333344455 5555555442 221111
Q ss_pred cccCCCCCCCCCCCCCC--CCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeec
Q 002265 814 EFLGIEESSEDDPSSSS--SSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIW 891 (945)
Q Consensus 814 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~ 891 (945)
+.....+...+...+. ....+..+++|+.|++++|. +..+. . +..+++|+.|++.
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~-------~--------------~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ-ISDLT-------P--------------LANLTRITQLGLN 383 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCBCG-------G--------------GTTCTTCCEEECC
T ss_pred -hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc-cCccc-------h--------------hhcCCCCCEEecc
Confidence 1111111111111110 01235688999999999874 33221 1 3456669999999
Q ss_pred cCcCCCCCCcC
Q 002265 892 YCPKLKVLPDY 902 (945)
Q Consensus 892 ~c~~L~~lp~~ 902 (945)
+| .+..+|..
T Consensus 384 ~n-~~~~~p~~ 393 (466)
T 1o6v_A 384 DQ-AWTNAPVN 393 (466)
T ss_dssp CE-EEECCCBC
T ss_pred CC-cccCCchh
Confidence 99 45555543
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=2.3e-20 Score=220.25 Aligned_cols=344 Identities=14% Similarity=0.070 Sum_probs=206.8
Q ss_pred CCcEEEEEeecCCCCCCC-ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFP-MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++.+.++.+.+..++ ..+.++++|++|+++++. +..+.++.|.++++|++|+ +++|.+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~------------Ls~N~l 112 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLD------------VSHNRL 112 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEE------------CTTSCC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEE------------CCCCcC
Confidence 367899999999988775 588999999999999987 3355677799999999999 666677
Q ss_pred cccCccccccCccccccccccccccc--ChhhhcCCcccEEEecCCCCccccCcccccccCC--CeeecCCCCC--CccC
Q 002265 574 REIPKNVRKLIHLKYLNLSELGIEIL--PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM--RSLLNGETYS--LKYM 647 (945)
Q Consensus 574 ~~lp~~i~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L--~~L~l~~~~~--l~~l 647 (945)
..+|.. .+.+|++|++++|.+..+ |..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccC
Confidence 778776 788888888888888865 4788888888888888876 443 235556666 8888777643 2333
Q ss_pred ccCCCC--------------------------CCCCCcCCcccccCC------------cCCC-----------------
Q 002265 648 PIGISK--------------------------LTSLRTLDRFVVGGG------------VDGS----------------- 672 (945)
Q Consensus 648 p~~i~~--------------------------L~~L~~L~~~~~~~~------------~~~~----------------- 672 (945)
|..+.. +++|+.|++..+... ..+.
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 333322 223333333222100 0000
Q ss_pred ---CcccccccccCCCCCeEEEcCCCCCC---------------------Chh-hhh--------------------hcc
Q 002265 673 ---NTCRLESLKNLQLRGKCSIEGLSNVS---------------------HLD-EAE--------------------RSQ 707 (945)
Q Consensus 673 ---~~~~l~~L~~L~L~~~l~i~~l~~~~---------------------~~~-~~~--------------------~~~ 707 (945)
......+|+.|+++++.....++... .+. ... ...
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 00000123333333221000111000 000 000 000
Q ss_pred -cccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCC---cccccccCCcEEEEecC
Q 002265 708 -LYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFP---KWLTSLTNLRELRLVSC 783 (945)
Q Consensus 708 -l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~L~~~ 783 (945)
...+++|+.|+++.|.+.+ ..+..+..+++|+.|++++|....+| ..+..+++|+.|++++|
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTD--------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCT--------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred CccCCCCceEEECCCCcccc--------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 1567788888888887532 12344566778888888888776554 45677888888888888
Q ss_pred CCCCcCCC--CCccc-cceEeeccccCceEeCccccCCCCCCCCCC---CCCCCCCcCcCCCccceeeccCccccccccc
Q 002265 784 VDCEHLPP--LGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDP---SSSSSSSSVTAFPKLKSLEIKGLDELEEWNY 857 (945)
Q Consensus 784 ~~~~~l~~--l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~ 857 (945)
.....+|. +..++ |+.|+++++.--..+...+. ..+...+. ....+|..+..+++|++|+++++. ++.+
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l-- 488 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSV-- 488 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCC--
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCC--
Confidence 75554553 55667 88888877641111111100 11111111 122455556689999999999863 3333
Q ss_pred cccccccccCCCcccccCCCCCCCCCccceEeeccCcCCC
Q 002265 858 RITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLK 897 (945)
Q Consensus 858 ~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~ 897 (945)
|. ..+..+++|+.|++++|+.-.
T Consensus 489 -----------~~------~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 489 -----------PD------GVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp -----------CT------TSTTTCTTCCCEECCSCCBCC
T ss_pred -----------CH------HHHhcCCCCCEEEecCCCcCC
Confidence 22 025667779999999996443
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=2.5e-20 Score=212.70 Aligned_cols=282 Identities=18% Similarity=0.145 Sum_probs=207.1
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
+.++++|++|+ ++++.+..+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+|
T Consensus 38 ~~~l~~L~~L~------------Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLD------------CHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD 101 (457)
T ss_dssp HHHHTTCCEEE------------CCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC
T ss_pred hhHcCCCCEEE------------ccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee
Confidence 66789999999 6667777777 6899999999999999999987 9999999999999998 77776
Q ss_pred cccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhh
Q 002265 625 AGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAE 704 (945)
Q Consensus 625 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~ 704 (945)
++++++|++|++++| .+..+| ++.+++|++|++..+.....+ ...+..|+.|+++++-.+..+
T Consensus 102 --~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---------- 164 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---------- 164 (457)
T ss_dssp --CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC----------
T ss_pred --cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc----------
Confidence 899999999999999 566676 899999999999888765542 556778888887765222211
Q ss_pred hcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCC
Q 002265 705 RSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 705 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 784 (945)
.+..+++|+.|++++|.+... .+..+++|+.|.+++|....++ +..+++|+.|++++|.
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l-----------------~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITEL-----------------DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCC-----------------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred --ccccCCcCCEEECCCCcccee-----------------ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc
Confidence 366789999999999985431 1566789999999999887764 7789999999999996
Q ss_pred CCCcCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccc
Q 002265 785 DCEHLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKE 863 (945)
Q Consensus 785 ~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~ 863 (945)
... +| ++.++ |+.|+++++. +..++ ...|++|+.|++++. +++.+... .+.
T Consensus 224 l~~-ip-~~~l~~L~~L~l~~N~-l~~~~----------------------~~~l~~L~~L~l~~n-~L~~L~l~--~n~ 275 (457)
T 3bz5_A 224 LTE-ID-VTPLTQLTYFDCSVNP-LTELD----------------------VSTLSKLTTLHCIQT-DLLEIDLT--HNT 275 (457)
T ss_dssp CSC-CC-CTTCTTCSEEECCSSC-CSCCC----------------------CTTCTTCCEEECTTC-CCSCCCCT--TCT
T ss_pred ccc-cC-ccccCCCCEEEeeCCc-CCCcC----------------------HHHCCCCCEEeccCC-CCCEEECC--CCc
Confidence 544 67 78888 9999998864 33221 235677777766552 34333221 000
Q ss_pred cccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcC--------CCCCCCccEEEEeCC
Q 002265 864 NVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDY--------LLRTTTLQKLTIWGC 917 (945)
Q Consensus 864 ~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~--------~~~l~~L~~L~l~~c 917 (945)
..+.+| ...+++|+.|++++|+.++.+|.. +.++++|+.|++++|
T Consensus 276 ~~~~~~---------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 276 QLIYFQ---------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp TCCEEE---------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred cCCccc---------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 111111 234567888889888877776642 233455555555544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1e-20 Score=224.48 Aligned_cols=281 Identities=19% Similarity=0.193 Sum_probs=221.6
Q ss_pred CCccceEeeccccccccccccCCCcccccCcc-ccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCc
Q 002265 548 LVCLRALVIRQSSLYFHPFHLDPNSIREIPKN-VRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPA 625 (945)
Q Consensus 548 l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~ 625 (945)
+.++++|+ +.++.+..+|.. ++.+++|++|+|++|.+..+|. .++++++|++|+|++|. +..+|+
T Consensus 50 l~~l~~l~------------l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVT------------FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP 116 (597)
T ss_dssp GCCCSEEE------------ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCCceEEE------------eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCH
Confidence 56889999 777778888876 5789999999999999997764 89999999999999998 666665
Q ss_pred -ccccccCCCeeecCCCCCCccCccC-CCCCCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCCCCChhh
Q 002265 626 -GIGKLMNMRSLLNGETYSLKYMPIG-ISKLTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHLDE 702 (945)
Q Consensus 626 -~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~ 702 (945)
.++++++|++|++++| .+..+|.. ++.+++|++|++..+.....+ .....+.+|+.|+++++ .+..
T Consensus 117 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~--------- 185 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTH--------- 185 (597)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSB---------
T ss_pred HHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCC---------
Confidence 5689999999999999 67788877 599999999999988765543 34667888998888865 1111
Q ss_pred hhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEec
Q 002265 703 AERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVS 782 (945)
Q Consensus 703 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 782 (945)
..+..+++|+.|++++|.+. .+..+++|+.|++++|....+|..+ .++|+.|+|++
T Consensus 186 ---~~~~~l~~L~~L~l~~n~l~-------------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~ 241 (597)
T 3oja_B 186 ---VDLSLIPSLFHANVSYNLLS-------------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQH 241 (597)
T ss_dssp ---CCGGGCTTCSEEECCSSCCS-------------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCS
T ss_pred ---cChhhhhhhhhhhcccCccc-------------------cccCCchhheeeccCCccccccccc--CCCCCEEECCC
Confidence 12556789999999988632 3455678999999999887766543 47999999999
Q ss_pred CCCCCcCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccc
Q 002265 783 CVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITR 861 (945)
Q Consensus 783 ~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~ 861 (945)
|... ..+.++.++ |+.|+++++. +..+. +..+..+++|++|+|+++. +..++
T Consensus 242 n~l~-~~~~l~~l~~L~~L~Ls~N~-l~~~~-------------------~~~~~~l~~L~~L~Ls~N~-l~~l~----- 294 (597)
T 3oja_B 242 NNLT-DTAWLLNYPGLVEVDLSYNE-LEKIM-------------------YHPFVKMQRLERLYISNNR-LVALN----- 294 (597)
T ss_dssp SCCC-CCGGGGGCTTCSEEECCSSC-CCEEE-------------------SGGGTTCSSCCEEECTTSC-CCEEE-----
T ss_pred CCCC-CChhhccCCCCCEEECCCCc-cCCCC-------------------HHHhcCccCCCEEECCCCC-CCCCC-----
Confidence 9644 457788899 9999999875 43332 1224578999999999863 43332
Q ss_pred cccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcc
Q 002265 862 KENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 862 ~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
. .+..+|+|+.|+|++| .+..+|..+..+++|+.|++++|+.
T Consensus 295 --------~-------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 295 --------L-------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp --------C-------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred --------c-------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence 2 2345667999999999 6779998888899999999999974
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5.3e-21 Score=207.39 Aligned_cols=246 Identities=21% Similarity=0.236 Sum_probs=157.2
Q ss_pred CcEEEEEeecCCCC---CCCccccCCCceeEEEecc-CCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCC
Q 002265 496 VKVRHLGLNFEGGD---SFPMSICGLDRLRSLLIYD-RSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPN 571 (945)
Q Consensus 496 ~~~r~l~l~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~ 571 (945)
..++++.+..+.+. .+|..+..+++|++|++++ +. +...+|..|.++++|++|+ +++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~------------Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLY------------ITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEE------------EEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEE------------CcCC
Confidence 45667777666654 3566666666666666663 33 1122344456666666666 3333
Q ss_pred ccc-ccCccccccCccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCccccccc-CCCeeecCCCCCCccCc
Q 002265 572 SIR-EIPKNVRKLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLM-NMRSLLNGETYSLKYMP 648 (945)
Q Consensus 572 ~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~l~~lp 648 (945)
.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++.++ +|++|++++|.....+|
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 333 45566666666666666666666 5666666666666666666653335666666665 66666666664333455
Q ss_pred cCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCC
Q 002265 649 IGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGE 728 (945)
Q Consensus 649 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 728 (945)
..++.++ |+.|+ ++++. +. ...+..+..+++|+.|+++.|.+..
T Consensus 192 ~~~~~l~-L~~L~-----------------------Ls~N~-l~---------~~~~~~~~~l~~L~~L~L~~N~l~~-- 235 (313)
T 1ogq_A 192 PTFANLN-LAFVD-----------------------LSRNM-LE---------GDASVLFGSDKNTQKIHLAKNSLAF-- 235 (313)
T ss_dssp GGGGGCC-CSEEE-----------------------CCSSE-EE---------ECCGGGCCTTSCCSEEECCSSEECC--
T ss_pred hHHhCCc-ccEEE-----------------------CcCCc-cc---------CcCCHHHhcCCCCCEEECCCCceee--
Confidence 5554443 44444 44331 11 1123345667788888888877432
Q ss_pred CCccccCchhHHHHHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeecccc
Q 002265 729 GEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 729 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~ 806 (945)
.+..+..+++|+.|++++|... .+|.++..+++|+.|++++|...+.+|..+.++ |+.|++.+++
T Consensus 236 -------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 -------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred -------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 1223566789999999998876 789999999999999999998888899888899 9999998876
Q ss_pred Cc
Q 002265 807 SV 808 (945)
Q Consensus 807 ~L 808 (945)
.+
T Consensus 303 ~l 304 (313)
T 1ogq_A 303 CL 304 (313)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=212.64 Aligned_cols=293 Identities=20% Similarity=0.206 Sum_probs=219.6
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++.|.+..+.+..+ +..+.++++|++|+++++. +..+.+..|.++++|++|+ +++|.+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~------------L~~n~l 92 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLG------------LRSNRL 92 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEE------------CCSSCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEE------------CCCCcC
Confidence 45789999999988876 5678899999999999886 3355577799999999999 777777
Q ss_pred cccCcc-ccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCcc-C
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPI-G 650 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~ 650 (945)
..+|.. ++.+.+|++|+|++|.+..+ |..+.++++|++|++++|......|..+..+++|++|++++| .+..+|. .
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 171 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEA 171 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhH
Confidence 888764 68999999999999999855 678999999999999999844444667899999999999998 5666664 4
Q ss_pred CCCCCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCC
Q 002265 651 ISKLTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEG 729 (945)
Q Consensus 651 i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 729 (945)
+..+++|+.|++..+.....+ .....+.+|+.|+++++-.+.. .........+|+.|+++.|.+...+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~n~l~~~~- 240 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT----------MTPNCLYGLNLTSLSITHCNLTAVP- 240 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE----------ECTTTTTTCCCSEEEEESSCCCSCC-
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc----------cCcccccCccccEEECcCCcccccC-
Confidence 889999999999887755433 3445667777777665421111 1122333458999999988754321
Q ss_pred CccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCC-cccccccCCcEEEEecCCCCCcCC-CCCccc-cceEeecccc
Q 002265 730 EEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFP-KWLTSLTNLRELRLVSCVDCEHLP-PLGKLA-LEKLELGNLK 806 (945)
Q Consensus 730 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~-L~~L~l~~~~ 806 (945)
...+..+++|+.|++++|....++ ..+..+++|+.|+|++|......| .+..++ |+.|+++++.
T Consensus 241 -------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 241 -------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp -------------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred -------------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 123556789999999998876654 457789999999999986554433 367788 9999998874
Q ss_pred CceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcc
Q 002265 807 SVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLD 850 (945)
Q Consensus 807 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 850 (945)
+..++... +..+++|++|+|++++
T Consensus 308 -l~~~~~~~-------------------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 -LTTLEESV-------------------FHSVGNLETLILDSNP 331 (477)
T ss_dssp -CSCCCGGG-------------------BSCGGGCCEEECCSSC
T ss_pred -CceeCHhH-------------------cCCCcccCEEEccCCC
Confidence 44443321 3468899999998854
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3e-19 Score=195.74 Aligned_cols=285 Identities=21% Similarity=0.161 Sum_probs=206.1
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.++.+.+..+++..+|..+ .++|++|+++++. +..+.+..|.++++|++|+ +++|.+..+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~------------L~~n~l~~~ 93 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND------ISELRKDDFKGLQHLYALV------------LVNNKISKI 93 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC------CCEECTTTTTTCTTCCEEE------------CCSSCCCEE
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc------CCccCHhHhhCCCCCcEEE------------CCCCccCcc
Confidence 4566777777777777665 3689999999876 3344566688999999999 666666766
Q ss_pred -CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCC--ccCccCCC
Q 002265 577 -PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSL--KYMPIGIS 652 (945)
Q Consensus 577 -p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l--~~lp~~i~ 652 (945)
|..++.+++|++|++++|.+..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|... ...|..++
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 6678999999999999999999988776 899999999987 667775 4788999999999988432 24566677
Q ss_pred CCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 653 KLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 653 ~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
.+ +|+.|++..+.....+... ...|+.|+++++ .+ .......+..+++|+.|++++|.+....
T Consensus 171 ~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n-~i---------~~~~~~~l~~l~~L~~L~L~~N~l~~~~---- 233 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHN-KI---------QAIELEDLLRYSKLYRLGLGHNQIRMIE---- 233 (332)
T ss_dssp SC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSS-CC---------CCCCTTSSTTCTTCSCCBCCSSCCCCCC----
T ss_pred CC-ccCEEECcCCCCCccCccc--cCCCCEEECCCC-cC---------CccCHHHhcCCCCCCEEECCCCcCCcCC----
Confidence 77 8999998888766555433 268888888765 11 1222345777889999999988754321
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCC--CCc------cc-cceEeec
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPP--LGK------LA-LEKLELG 803 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~------l~-L~~L~l~ 803 (945)
...+..+++|+.|++++|....+|.++..+++|+.|++++|... .++. +.. .+ |+.|++.
T Consensus 234 ----------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 234 ----------NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ----------TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ----------hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEee
Confidence 12356678999999999999999999999999999999998643 3322 221 35 7888888
Q ss_pred cccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcc
Q 002265 804 NLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLD 850 (945)
Q Consensus 804 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 850 (945)
+++ +.... ..+..+..+++|+.|+++++.
T Consensus 303 ~N~-~~~~~-----------------~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 303 NNP-VPYWE-----------------VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSS-SCGGG-----------------SCGGGGTTBCCSTTEEC----
T ss_pred cCc-ccccc-----------------cCcccccccchhhhhhccccc
Confidence 765 21110 011224578889999888754
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.7e-20 Score=201.92 Aligned_cols=187 Identities=24% Similarity=0.356 Sum_probs=97.9
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCccccc---------ccCCCeeec
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGK---------LMNMRSLLN 638 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~---------L~~L~~L~l 638 (945)
+++|.+..+|..++.+.+|++|+|++|.+..+|..++++++|++|++++|..+..+|..++. +++|++|++
T Consensus 111 L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190 (328)
T ss_dssp EESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEE
T ss_pred CCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEEC
Confidence 33344445555555555555555555555555555555555555555555555555554443 555555555
Q ss_pred CCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEE
Q 002265 639 GETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLH 718 (945)
Q Consensus 639 ~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 718 (945)
++| .+..+|..++.+++|++|++..+.....+.....++ +|+.|+
T Consensus 191 ~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~----------------------------------~L~~L~ 235 (328)
T 4fcg_A 191 EWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP----------------------------------KLEELD 235 (328)
T ss_dssp EEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT----------------------------------TCCEEE
T ss_pred cCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC----------------------------------CCCEEE
Confidence 555 334555555555555555544443222222222222 333333
Q ss_pred EEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCC-CCCCcccccccCCcEEEEecCCCCCcCCC-CCccc
Q 002265 719 LEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGG-NIFPKWLTSLTNLRELRLVSCVDCEHLPP-LGKLA 796 (945)
Q Consensus 719 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 796 (945)
+++|.+.+ ..+..+..+++|+.|++++|.. ..+|.++..+++|+.|+|++|...+.+|. ++.++
T Consensus 236 Ls~n~~~~--------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 236 LRGCTALR--------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp CTTCTTCC--------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred CcCCcchh--------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 33222110 0111233344555555555432 34677777888888888888887777775 56666
Q ss_pred -cceEeec
Q 002265 797 -LEKLELG 803 (945)
Q Consensus 797 -L~~L~l~ 803 (945)
|+.+.+.
T Consensus 302 ~L~~l~l~ 309 (328)
T 4fcg_A 302 ANCIILVP 309 (328)
T ss_dssp TTCEEECC
T ss_pred CceEEeCC
Confidence 6666655
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.9e-19 Score=197.24 Aligned_cols=291 Identities=15% Similarity=0.135 Sum_probs=184.3
Q ss_pred CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCcccc-Ccc
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLREL-PAG 626 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-P~~ 626 (945)
.+|++++ ++++.+..+|..+. .+|++|++++|.+..+| ..++++++|++|++++|. +..+ |..
T Consensus 33 c~l~~l~------------~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 97 (332)
T 2ft3_A 33 CHLRVVQ------------CSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKA 97 (332)
T ss_dssp EETTEEE------------CCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGG
T ss_pred ccCCEEE------------CCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhH
Confidence 3577787 66666677777653 57888888888877664 467888888888888876 5444 667
Q ss_pred cccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCC-CcccccccccCCCCCeEEEcCCCCCCChhhhhh
Q 002265 627 IGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHLDEAER 705 (945)
Q Consensus 627 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~-~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~ 705 (945)
+.++++|++|++++| .+..+|..+. ++|++|++..+.....+. ....+.+|+.|+++++. +.. .....
T Consensus 98 ~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-------~~~~~ 166 (332)
T 2ft3_A 98 FSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LEN-------SGFEP 166 (332)
T ss_dssp STTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBG-------GGSCT
T ss_pred hhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-ccc-------CCCCc
Confidence 778888888888877 5667776665 678888777766554433 24456667777666541 110 01112
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCC-cccccccCCcEEEEecCC
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFP-KWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 784 (945)
..+..+ +|+.|+++.|.+...+ .. .+++|+.|+++++....++ ..+..+++|+.|++++|.
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~---------------~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIP---------------KD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCC---------------SS--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred ccccCC-ccCEEECcCCCCCccC---------------cc--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 334444 7778888777643321 11 1257888888888776654 567788888888888886
Q ss_pred CCCcCC-CCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcccccccccccccc
Q 002265 785 DCEHLP-PLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRK 862 (945)
Q Consensus 785 ~~~~l~-~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~ 862 (945)
.....+ .++.++ |+.|+++++. +..++ ..+..+++|++|+++++. ++.++..
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp--------------------~~l~~l~~L~~L~l~~N~-l~~~~~~---- 282 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNK-LSRVP--------------------AGLPDLKLLQVVYLHTNN-ITKVGVN---- 282 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSC-CCBCC--------------------TTGGGCTTCCEEECCSSC-CCBCCTT----
T ss_pred CCcCChhHhhCCCCCCEEECCCCc-CeecC--------------------hhhhcCccCCEEECCCCC-CCccChh----
Confidence 544333 366777 8888888764 43332 224578888999988753 4433221
Q ss_pred ccccCCCcccccCCCCCCCCCccceEeeccCcCC--CCCCcCCCCCCCccEEEEeCCc
Q 002265 863 ENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKL--KVLPDYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 863 ~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L--~~lp~~~~~l~~L~~L~l~~c~ 918 (945)
.+.. +......++|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 283 ----~~~~-----~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 ----DFCP-----VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----SSSC-----SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ----Hccc-----cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1111 000112456889999988754 3455667778889999888874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=3.7e-19 Score=194.84 Aligned_cols=291 Identities=15% Similarity=0.153 Sum_probs=173.6
Q ss_pred CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCcccc-Ccc
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLREL-PAG 626 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~ 626 (945)
.+|++++ ++++.+..+|..+. .+|++|++++|.++.+|. .++++++|++|++++|. +..+ |..
T Consensus 31 c~l~~l~------------~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (330)
T 1xku_A 31 CHLRVVQ------------CSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGA 95 (330)
T ss_dssp EETTEEE------------CTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT
T ss_pred CCCeEEE------------ecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHH
Confidence 4678888 66666777777654 578888888888887765 68888888888888887 5444 777
Q ss_pred cccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCC-CcccccccccCCCCCeEEEcCCCCCCChhhhhh
Q 002265 627 IGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHLDEAER 705 (945)
Q Consensus 627 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~-~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~ 705 (945)
+..+++|++|++++| .+..+|..+. ++|++|++..+.....+. ....+.+|+.|+++++. +.. .....
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-------~~~~~ 164 (330)
T 1xku_A 96 FAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKS-------SGIEN 164 (330)
T ss_dssp TTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCG-------GGBCT
T ss_pred hcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCc-------cCcCh
Confidence 888888888888887 5667776665 678887776665443321 23345566666555431 000 01222
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCC
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 784 (945)
..+..+++|+.|+++.|.+...+ .. .+++|+.|++++|....+ |.++..+++|+.|++++|.
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~---------------~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIP---------------QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCC---------------SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred hhccCCCCcCEEECCCCccccCC---------------cc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 34566677777777776643221 01 125677777777766544 5566677777777777775
Q ss_pred CCCcCC-CCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcccccccccccccc
Q 002265 785 DCEHLP-PLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRK 862 (945)
Q Consensus 785 ~~~~l~-~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~ 862 (945)
.....+ .+..++ |+.|+++++. +..+ |..+..+++|++|+++++. ++.++..
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~-l~~l--------------------p~~l~~l~~L~~L~l~~N~-i~~~~~~---- 281 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNK-LVKV--------------------PGGLADHKYIQVVYLHNNN-ISAIGSN---- 281 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSC-CSSC--------------------CTTTTTCSSCCEEECCSSC-CCCCCTT----
T ss_pred CceeChhhccCCCCCCEEECCCCc-CccC--------------------ChhhccCCCcCEEECCCCc-CCccChh----
Confidence 443332 355666 7777777653 3222 2223456777777777643 3332210
Q ss_pred ccccCCCcccccCCCCCCCCCccceEeeccCcCCC--CCCcCCCCCCCccEEEEeCC
Q 002265 863 ENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLK--VLPDYLLRTTTLQKLTIWGC 917 (945)
Q Consensus 863 ~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~--~lp~~~~~l~~L~~L~l~~c 917 (945)
.+.. .......+.|+.|++.+|+... .-|..+..+++|+.+++++|
T Consensus 282 ----~f~~-----~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 ----DFCP-----PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ----SSSC-----SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ----hcCC-----cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 0100 0011123457777777775422 23445556677777777665
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=1.4e-18 Score=198.01 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=101.7
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
+..++.+.+..+....+|.. .++|++|+++++... . ++. ..++|++|+ +++|.+.
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~------~-l~~---~~~~L~~L~------------L~~n~l~ 144 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK------A-LSD---LPPLLEYLG------------VSNNQLE 144 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS------C-CCS---CCTTCCEEE------------CCSSCCS
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccC------c-ccC---CCCCCCEEE------------CcCCCCC
Confidence 35677788877777666542 367788887776521 1 111 115677777 6666666
Q ss_pred ccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCC
Q 002265 575 EIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKL 654 (945)
Q Consensus 575 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 654 (945)
.+| .++.+++|++|++++|.++.+|..+ .+|++|++++|. +..+| .++++++|++|++++| .+..+|...
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~--- 214 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP--- 214 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---
Confidence 677 4777888888888888777777543 477777887776 66677 4777777777777777 444555432
Q ss_pred CCCCcCCcccccCCcCCCCcccccccccCCCCCe
Q 002265 655 TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGK 688 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 688 (945)
++|++|++..+.....+. ...+++|+.|+++++
T Consensus 215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCcccc-cCCCCCCCEEECCCC
Confidence 466777766665544442 445666666666644
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=6.6e-19 Score=192.87 Aligned_cols=285 Identities=18% Similarity=0.149 Sum_probs=190.6
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.++.+.+..++...+|..+ .+++++|+++++. +..+.+..|.++++|++|+ +++|.+..+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~------------L~~n~l~~~ 91 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNK------ITEIKDGDFKNLKNLHTLI------------LINNKISKI 91 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEE------------CCSSCCCCB
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCc------CCEeChhhhccCCCCCEEE------------CCCCcCCee
Confidence 3455666666666666544 3678888888776 2233444577888888888 666666665
Q ss_pred -CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCC--ccCccCCC
Q 002265 577 -PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSL--KYMPIGIS 652 (945)
Q Consensus 577 -p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l--~~lp~~i~ 652 (945)
|..++.+++|++|++++|.++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 168 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence 6678888888888888888888887665 788888888877 555554 4677888888888887432 14456677
Q ss_pred CCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 653 KLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 653 ~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
.+++|+.|++..+.....+... .+.|+.|+++++ .+.......+..+++|+.|++++|.+....
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---- 232 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGN----------KITKVDAASLKGLNNLAKLGLSFNSISAVD---- 232 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTS----------CCCEECTGGGTTCTTCCEEECCSSCCCEEC----
T ss_pred CCCCcCEEECCCCccccCCccc--cccCCEEECCCC----------cCCccCHHHhcCCCCCCEEECCCCcCceeC----
Confidence 8888888887777655544332 267777777754 112222345777889999999988753321
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCC--CC------ccc-cceEeec
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPP--LG------KLA-LEKLELG 803 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~------~l~-L~~L~l~ 803 (945)
...+..+++|+.|++++|....+|.++..+++|+.|++++|... .++. +. ..+ |+.|++.
T Consensus 233 ----------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 233 ----------NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp ----------TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred ----------hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEee
Confidence 12355678999999999998899999999999999999998643 3332 21 234 7777777
Q ss_pred cccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCc
Q 002265 804 NLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGL 849 (945)
Q Consensus 804 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 849 (945)
+.+ +.... ..+..+..+++|+.++|+++
T Consensus 302 ~N~-~~~~~-----------------i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 302 SNP-VQYWE-----------------IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSS-SCGGG-----------------SCGGGGTTCCCGGGEEC---
T ss_pred cCc-ccccc-----------------cCccccccccceeEEEeccc
Confidence 654 21110 01123456778888888764
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=3.2e-19 Score=214.38 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=112.3
Q ss_pred CCcEEEEEeecCCCCCCC-ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFP-MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..+++|.++.+.+..++ ..|.++++|++|++++|. +..+.++.|.++++|++|+ |++|.+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~------------Ls~N~l 112 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLI------------LTGNPI 112 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEE------------CTTCCC
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEE------------ccCCcC
Confidence 457899999999888775 468899999999999886 3455667789999999999 777777
Q ss_pred cccCc-cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCcc--ccCcccccccCCCeeecCCCCCCccCcc
Q 002265 574 REIPK-NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLR--ELPAGIGKLMNMRSLLNGETYSLKYMPI 649 (945)
Q Consensus 574 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~ 649 (945)
..+|. .|+++.+|++|+|++|.++.+|. .+++|++|++|++++|. +. .+|..++.+++|++|++++|......|.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccc
Confidence 78875 47889999999999999888876 48899999999999887 43 4577788899999999988843333344
Q ss_pred CCCCCCCCC
Q 002265 650 GISKLTSLR 658 (945)
Q Consensus 650 ~i~~L~~L~ 658 (945)
.+..+.+++
T Consensus 192 ~l~~L~~l~ 200 (635)
T 4g8a_A 192 DLRVLHQMP 200 (635)
T ss_dssp GGHHHHTCT
T ss_pred cccchhhhh
Confidence 444444433
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=9.3e-20 Score=197.59 Aligned_cols=224 Identities=16% Similarity=0.135 Sum_probs=171.4
Q ss_pred CCcEEEEEeec-CCCC-CCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 495 GVKVRHLGLNF-EGGD-SFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 495 ~~~~r~l~l~~-~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
...++.+.+.+ +... .+|..+.++++|++|+++++. +...+|..+.++++|++|+ +++|.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~------------Ls~N~ 136 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN------VSGAIPDFLSQIKTLVTLD------------FSYNA 136 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC------CEEECCGGGGGCTTCCEEE------------CCSSE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe------eCCcCCHHHhCCCCCCEEe------------CCCCc
Confidence 45789999984 6554 678889999999999999987 3334667799999999999 66666
Q ss_pred cc-ccCccccccCccccccccccccc-ccChhhhcCC-cccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCcc
Q 002265 573 IR-EIPKNVRKLIHLKYLNLSELGIE-ILPETLCELY-NLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPI 649 (945)
Q Consensus 573 l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~ 649 (945)
+. .+|..++.+++|++|++++|.+. .+|..++++. +|++|++++|.....+|..+..+. |++|++++|......|.
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence 66 68899999999999999999998 8999999998 999999999985558999999997 99999999965556777
Q ss_pred CCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCC
Q 002265 650 GISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEG 729 (945)
Q Consensus 650 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 729 (945)
.++.+++|+.|++..+........ +..+++|+.|+++.|.+.+
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~----------------------------------~~~l~~L~~L~Ls~N~l~~--- 258 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK----------------------------------VGLSKNLNGLDLRNNRIYG--- 258 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG----------------------------------CCCCTTCCEEECCSSCCEE---
T ss_pred HHhcCCCCCEEECCCCceeeecCc----------------------------------ccccCCCCEEECcCCcccC---
Confidence 888899898888766543221111 2334566666666665321
Q ss_pred CccccCchhHHHHHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEEEecCCCC
Q 002265 730 EEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELRLVSCVDC 786 (945)
Q Consensus 730 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~ 786 (945)
..+..+..+++|+.|++++|... .+|.. ..+++|+.|++.+|+.+
T Consensus 259 -----------~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 259 -----------TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -----------CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred -----------cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 12234455667777777776654 45665 78999999999998743
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=8.6e-18 Score=197.30 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=198.1
Q ss_pred CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccc
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIG 628 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~ 628 (945)
..+++|+ ++++.+..+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|.
T Consensus 40 ~~l~~L~------------ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLN------------VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--- 98 (622)
T ss_dssp HCCCEEE------------CCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---
T ss_pred CCCcEEE------------ecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---
Confidence 4589999 77778888998776 799999999999999998 68999999999998 888987
Q ss_pred cccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhccc
Q 002265 629 KLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQL 708 (945)
Q Consensus 629 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l 708 (945)
.+++|++|++++| .+..+|. .+++|+.|++..+.....+. .+++|++|++++| .+..++.
T Consensus 99 ~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~------------ 158 (622)
T 3g06_A 99 LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPA------------ 158 (622)
T ss_dssp CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC------------
T ss_pred CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCC-cCCCcCC------------
Confidence 7899999999998 6777876 67889999988877655443 3578888888765 3332221
Q ss_pred ccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCc
Q 002265 709 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEH 788 (945)
Q Consensus 709 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 788 (945)
...+|+.|+++.|.+...+ ..+++|+.|++++|....+|.. +++|+.|++++|. +..
T Consensus 159 -~~~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~ 215 (622)
T 3g06_A 159 -LPSELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTS 215 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSS
T ss_pred -ccCCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccc
Confidence 2467899999888754321 3468899999999988887764 5789999999885 445
Q ss_pred CCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccC
Q 002265 789 LPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSI 867 (945)
Q Consensus 789 l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~ 867 (945)
+|.. ++ |+.|+++++. +..++ ..+++|++|+++++ +++.++
T Consensus 216 l~~~--~~~L~~L~Ls~N~-L~~lp-----------------------~~l~~L~~L~Ls~N-~L~~lp----------- 257 (622)
T 3g06_A 216 LPAL--PSGLKELIVSGNR-LTSLP-----------------------VLPSELKELMVSGN-RLTSLP----------- 257 (622)
T ss_dssp CCCC--CTTCCEEECCSSC-CSCCC-----------------------CCCTTCCEEECCSS-CCSCCC-----------
T ss_pred cCCC--CCCCCEEEccCCc-cCcCC-----------------------CCCCcCcEEECCCC-CCCcCC-----------
Confidence 5542 46 9999998763 43322 25689999999986 343332
Q ss_pred CCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCcch
Q 002265 868 MPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCPLL 920 (945)
Q Consensus 868 lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L 920 (945)
. .+++|+.|+|++| .++.+|..+.++++|+.|++++|+.-
T Consensus 258 --~----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 258 --M----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp --C----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred --c----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 1 2456999999999 78899999999999999999999854
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=191.23 Aligned_cols=263 Identities=19% Similarity=0.115 Sum_probs=182.6
Q ss_pred EEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC-cc
Q 002265 501 LGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-KN 579 (945)
Q Consensus 501 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~~ 579 (945)
.....+++..+|..+. ++|++|+++++. +..+.+..|.++++|++|+ +++|.+..++ ..
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~------------L~~n~l~~~~~~~ 95 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR------ITYISNSDLQRCVNLQALV------------LTSNGINTIEEDS 95 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEE------------CTTSCCCEECTTT
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc------CcccCHHHhccCCCCCEEE------------CCCCccCccCHhh
Confidence 4455566667776543 588899888876 2344455678888999998 6666666664 46
Q ss_pred ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCc--ccccccCCCeeecCCCCCCccC-ccCCCCCC
Q 002265 580 VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPA--GIGKLMNMRSLLNGETYSLKYM-PIGISKLT 655 (945)
Q Consensus 580 i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~ 655 (945)
++.+++|++|++++|.++.+|.. ++++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++.++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 88888999999999988888876 7888999999998887 777876 6788899999999888555555 45688888
Q ss_pred CCCcCCcccccCCcC-CCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcccc
Q 002265 656 SLRTLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRR 734 (945)
Q Consensus 656 ~L~~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 734 (945)
+|++|++..+..... +.....+++|+.|+++++. +..+ ....+..+++|+.|+++.|.+......
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~---- 240 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-------HILL---LEIFVDVTSSVECLELRDTDLDTFHFS---- 240 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-------STTH---HHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-------cccc---hhhhhhhcccccEEECCCCcccccccc----
Confidence 888888887765443 4445567777777766441 1111 122344578899999998876543211
Q ss_pred CchhHHHHHhcCCCCCCccEEEEEeeCCC-----CCCcccccccCCcEEEEecCCCCCcCCC--CCccc-cceEeecccc
Q 002265 735 KNEKDKQLLEALQPPLNLEEFGIVFYGGN-----IFPKWLTSLTNLRELRLVSCVDCEHLPP--LGKLA-LEKLELGNLK 806 (945)
Q Consensus 735 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~~L~l~~~~ 806 (945)
.+........++.+.+.++... .+|.++..+++|+.|++++|... .+|. ++.++ |+.|++++++
T Consensus 241 -------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 -------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred -------ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 0111234566777777766543 35777888889999999888644 5655 46778 8888888764
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=6.9e-18 Score=202.69 Aligned_cols=121 Identities=23% Similarity=0.278 Sum_probs=99.9
Q ss_pred CCcEEEEEeecCCCCCCC-ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFP-MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
..++++|.++.+.+..++ .+|.++++|++|++++|. +..+++..|.++++|++|+ +++|.+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~------l~~l~~~~f~~L~~L~~L~------------Ls~N~l 136 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLV------------AVETNL 136 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCEECGGGGTTCTTCCEEE------------CTTSCC
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc------CCCCCHHHhcCCCCCCEEE------------CCCCcC
Confidence 457999999999988775 468899999999999987 3455677899999999999 777777
Q ss_pred cccCc-cccccCccccccccccccc--ccChhhhcCCcccEEEecCCCCcccc-CcccccccCCC
Q 002265 574 REIPK-NVRKLIHLKYLNLSELGIE--ILPETLCELYNLQKLDIRRCRNLREL-PAGIGKLMNMR 634 (945)
Q Consensus 574 ~~lp~-~i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~ 634 (945)
..+|. .|+++++|++|+|++|.+. .+|..++++++|++|++++|. +..+ |..+..+.++.
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMP 200 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCT
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhh
Confidence 77875 4899999999999999987 568899999999999999997 5544 45566665554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=192.36 Aligned_cols=259 Identities=18% Similarity=0.148 Sum_probs=200.6
Q ss_pred CCcEEEEEeecCCCCCCCc-cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFPM-SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
...++.+.+..+.+..++. .+.++++|++|+++++. +..+.+..|.++++|++|+ +++|.+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~------------Ls~n~l 112 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLD------------LSYNYL 112 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEE------------CCSSCC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEE------------CCCCcC
Confidence 3579999999998887765 78899999999999886 3344566789999999999 777777
Q ss_pred cccCcc-ccccCcccccccccccccccCh--hhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCccCcc
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIEILPE--TLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKYMPI 649 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~ 649 (945)
..+|.. ++.+++|++|++++|.+..+|. .++++++|++|++++|..+..++ ..+..+++|++|++++|......|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 888876 8899999999999999999987 78999999999999996576664 5788999999999999965555688
Q ss_pred CCCCCCCCCcCCcccccCCcCCCC-cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCC
Q 002265 650 GISKLTSLRTLDRFVVGGGVDGSN-TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGE 728 (945)
Q Consensus 650 ~i~~L~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 728 (945)
.++.+++|++|++..+.....+.. ...+++|+.|+++++ .+..... ...........++.+++..+.+.+
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~------~~l~~~~~~~~l~~l~L~~~~l~~-- 263 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHF------SELSTGETNSLIKKFTFRNVKITD-- 263 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCC------C------CCCCCCEEEEESCBCCH--
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccc------cccccccccchhhccccccccccC--
Confidence 899999999999988775443322 224678888887754 2222110 001122345678888988776421
Q ss_pred CCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCccc-ccccCCcEEEEecCCCCCc
Q 002265 729 GEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWL-TSLTNLRELRLVSCVDCEH 788 (945)
Q Consensus 729 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~ 788 (945)
.....++..+..+++|+.|++++|....+|.++ ..+++|+.|++++|+....
T Consensus 264 --------~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 264 --------ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp --------HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --------cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 223456677788999999999999999999885 7999999999999965443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=9.7e-18 Score=181.45 Aligned_cols=238 Identities=20% Similarity=0.116 Sum_probs=136.6
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc---
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI--- 576 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l--- 576 (945)
.+.+...++..+|..+. ++|++|++.++. +..+.+..|.++++|++|+ +++|.+..+
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~------l~~i~~~~~~~l~~L~~L~------------L~~n~l~~~~~~ 70 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK------LQSLPHGVFDKLTQLTKLS------------LSSNGLSFKGCC 70 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC------CCCCCTTTTTTCTTCSEEE------------CCSSCCCEEEEE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc------cCccCHhHhhccccCCEEE------------CCCCccCcccCc
Confidence 34455555556665432 567777777665 2233444566777777777 444444333
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc--ccccccCCCeeecCCCCCCccCccCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA--GIGKLMNMRSLLNGETYSLKYMPIGISKL 654 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 654 (945)
|..+..+.+|++|++++|.+..+|..+..+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 455566777777777777777777777777777777777766 555553 56677777777777774433444556666
Q ss_pred CCCCcCCcccccCCc--CCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 655 TSLRTLDRFVVGGGV--DGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~--~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
++|++|++..+.... .+.. +..+++|+.|++++|.+...
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~----------------------------------~~~l~~L~~L~Ls~n~l~~~----- 190 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDI----------------------------------FTELRNLTFLDLSQCQLEQL----- 190 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSC----------------------------------CTTCTTCCEEECTTSCCCEE-----
T ss_pred cCCCEEECCCCccccccchhH----------------------------------HhhCcCCCEEECCCCCcCCc-----
Confidence 666666655443221 1222 23334444444444432110
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCCCCCcCCC-CCccc--cceEeecccc
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCVDCEHLPP-LGKLA--LEKLELGNLK 806 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~--L~~L~l~~~~ 806 (945)
.+..+..+++|+.|++++|....+|. .+..+++|+.|++++|......|. +..+| |+.|++++++
T Consensus 191 ---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 ---------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ---------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ---------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 01223444556666666655544443 456677777777777765544432 45553 7777776654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.1e-17 Score=189.15 Aligned_cols=240 Identities=23% Similarity=0.262 Sum_probs=166.8
Q ss_pred EEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC-
Q 002265 499 RHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP- 577 (945)
Q Consensus 499 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp- 577 (945)
..+.....++..+|..+. +++++|+++++. +..+.+..|.++++|++|+ +++|.+..++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~------------Ls~n~i~~~~~ 116 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQ------------LGRNSIRQIEV 116 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCEECTTTTTTCTTCCEEE------------CCSSCCCEECT
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCc------CceECHHHcCCCCCCCEEE------------CCCCccCCcCh
Confidence 345566666667776543 688899988876 3344566688889999999 6666666665
Q ss_pred ccccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCcc-CCCCC
Q 002265 578 KNVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMPI-GISKL 654 (945)
Q Consensus 578 ~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L 654 (945)
..+..+.+|++|+|++|.++.+|.. ++++++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 5678888999999999998877765 7888999999999887 666665 577889999999998878887776 47888
Q ss_pred CCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcccc
Q 002265 655 TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRR 734 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 734 (945)
++|+.|++..+.....+ ....+.+|+.|+|+++ .+....+..+.++++|+.|+++.|.+....
T Consensus 196 ~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------ 258 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN----------HFPEIRPGSFHGLSSLKKLWVMNSQVSLIE------ 258 (452)
T ss_dssp TTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTS----------CCSEECGGGGTTCTTCCEEECTTSCCCEEC------
T ss_pred CCCCEEECCCCcccccc-cccccccccEEECcCC----------cCcccCcccccCccCCCEEEeCCCcCceEC------
Confidence 88888888777655443 2345566666666654 122223345666777777777776643211
Q ss_pred CchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCC
Q 002265 735 KNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCV 784 (945)
Q Consensus 735 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 784 (945)
...+..+++|+.|++++|....+|. .+..+++|+.|+|++|+
T Consensus 259 --------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 --------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --------TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --------HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 1234556677777777776666554 34567777777777664
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=187.09 Aligned_cols=239 Identities=21% Similarity=0.253 Sum_probs=156.3
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC-c
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-K 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~ 578 (945)
.+.....++..+|..+. ++++.|+++++. +..+.+..|.++++|++|+ +++|.+..++ .
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~------------Ls~n~i~~i~~~ 106 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQ------------LSRNHIRTIEIG 106 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCC------CCEECTTTTSSCSSCCEEE------------CCSSCCCEECGG
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEE------------CCCCcCCccChh
Confidence 45555666666776543 678888888776 2344455678888888888 6666666665 4
Q ss_pred cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCcc-CCCCCC
Q 002265 579 NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMPI-GISKLT 655 (945)
Q Consensus 579 ~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~ 655 (945)
.+..+.+|++|+|++|.++.+|. .+..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 57788888888888888887775 57888888888888887 666655 567788888888888777777765 477788
Q ss_pred CCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccC
Q 002265 656 SLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRK 735 (945)
Q Consensus 656 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 735 (945)
+|++|++..+.....+. ...+.+|+.|+|+++ . +....+..+.++++|+.|+++.|.+....
T Consensus 186 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N-~---------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------- 247 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN-H---------LSAIRPGSFQGLMHLQKLWMIQSQIQVIE------- 247 (440)
T ss_dssp SCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS-C---------CCEECTTTTTTCTTCCEEECTTCCCCEEC-------
T ss_pred ccCeecCCCCcCccccc-cCCCcccCEEECCCC-c---------cCccChhhhccCccCCEEECCCCceeEEC-------
Confidence 88888877766554432 334555666656544 1 11122334556667777777666543211
Q ss_pred chhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCC
Q 002265 736 NEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCV 784 (945)
Q Consensus 736 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 784 (945)
...+..+++|+.|+|++|....+|. .+..+++|+.|+|++|+
T Consensus 248 -------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 -------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -------TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -------hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 1234455666677776666655543 34566677777776664
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.4e-16 Score=186.94 Aligned_cols=254 Identities=20% Similarity=0.162 Sum_probs=192.2
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.++.+.+..+++..+|..+. ++|++|++++|.. .. +|. .+++|++|+ +++|.+..+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l------~~-lp~---~l~~L~~L~------------Ls~N~l~~l 96 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL------TS-LPA---LPPELRTLE------------VSGNQLTSL 96 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC------SC-CCC---CCTTCCEEE------------ECSCCCSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC------CC-CCC---cCCCCCEEE------------cCCCcCCcC
Confidence 36788888888888887665 8999999998862 22 222 578999999 666667778
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
|. .+++|++|++++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|.. +.+
T Consensus 97 p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~ 162 (622)
T 3g06_A 97 PV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSE 162 (622)
T ss_dssp CC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTT
T ss_pred CC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCC
Confidence 86 67899999999999999987 67899999999987 8888874 489999999998 66777754 467
Q ss_pred CCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCc
Q 002265 657 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKN 736 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 736 (945)
|+.|++..+.....+ ..+++|+.|+++++ .+..++. ..++|+.|+++.|.+...+
T Consensus 163 L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~-------------~~~~L~~L~L~~N~l~~l~-------- 217 (622)
T 3g06_A 163 LCKLWAYNNQLTSLP---MLPSGLQELSVSDN-QLASLPT-------------LPSELYKLWAYNNRLTSLP-------- 217 (622)
T ss_dssp CCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSSCCSSCC--------
T ss_pred CCEEECCCCCCCCCc---ccCCCCcEEECCCC-CCCCCCC-------------ccchhhEEECcCCcccccC--------
Confidence 778887777765544 44677888888765 2222221 2368999999988754321
Q ss_pred hhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeeccccCceEeCccc
Q 002265 737 EKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLKSVKRLGNEF 815 (945)
Q Consensus 737 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~~L~~l~~~~ 815 (945)
..+++|+.|++++|....+| ..+++|+.|++++|. +..+|. .++ |+.|++++|. +..++
T Consensus 218 ----------~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L~~lp--- 277 (622)
T 3g06_A 218 ----------ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-LTRLP--- 277 (622)
T ss_dssp ----------CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CCSCC---
T ss_pred ----------CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-CCcCC---
Confidence 12478999999999988888 466899999999984 556776 566 9999999874 44332
Q ss_pred cCCCCCCCCCCCCCCCCCcCcCCCccceeeccCcc
Q 002265 816 LGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLD 850 (945)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 850 (945)
..+..+++|+.|+|++++
T Consensus 278 -----------------~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 278 -----------------ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----------------GGGGGSCTTCEEECCSCC
T ss_pred -----------------HHHhhccccCEEEecCCC
Confidence 335688999999999975
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=3.1e-16 Score=179.48 Aligned_cols=235 Identities=22% Similarity=0.276 Sum_probs=145.2
Q ss_pred cCCCcccccCccccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~ 645 (945)
..+..+..+|..+. .+|++|+|++|.|..+ |..++++++|++|+|++|. +..++ ..+..+++|++|++++| .+.
T Consensus 61 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~ 136 (452)
T 3zyi_A 61 CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLT 136 (452)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred ECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCC
Confidence 55666777887664 6788888888888855 5678888888888888887 55544 56788888888888887 455
Q ss_pred cCccC-CCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccc
Q 002265 646 YMPIG-ISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRV 724 (945)
Q Consensus 646 ~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 724 (945)
.+|.. ++.+++|++|++..+.....+ ...+.++++|+.|+++.+..
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------------~~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIP---------------------------------SYAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEEC---------------------------------TTTTTTCTTCCEEECCCCTT
T ss_pred ccChhhhcccCCCCEEECCCCCcceeC---------------------------------HhHHhcCCcccEEeCCCCCC
Confidence 66544 677777777776554422211 01233344555555544320
Q ss_pred cCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCCCCCcCCCCCccc-cceEee
Q 002265 725 VDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLEL 802 (945)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l 802 (945)
...+ +..+..+++|+.|+|++|. +..+|.+..++ |+.|++
T Consensus 184 -------------------------------------l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 184 -------------------------------------LEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp -------------------------------------CCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEEC
T ss_pred -------------------------------------ccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEEC
Confidence 0111 2234456666666666663 33455566666 666666
Q ss_pred ccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCC
Q 002265 803 GNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDI 882 (945)
Q Consensus 803 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l 882 (945)
+++. +..+... .+..+++|++|+++++. ++.+. | ..+..+
T Consensus 226 s~N~-l~~~~~~-------------------~~~~l~~L~~L~L~~n~-l~~~~------------~-------~~~~~l 265 (452)
T 3zyi_A 226 SGNH-FPEIRPG-------------------SFHGLSSLKKLWVMNSQ-VSLIE------------R-------NAFDGL 265 (452)
T ss_dssp TTSC-CSEECGG-------------------GGTTCTTCCEEECTTSC-CCEEC------------T-------TTTTTC
T ss_pred cCCc-CcccCcc-------------------cccCccCCCEEEeCCCc-CceEC------------H-------HHhcCC
Confidence 6654 3333211 13467778888887753 22211 1 134556
Q ss_pred CccceEeeccCcCCCCCCc-CCCCCCCccEEEEeCCc
Q 002265 883 PRLSSLRIWYCPKLKVLPD-YLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 883 ~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 918 (945)
++|+.|+|++| .++.+|. .+..+++|+.|++++||
T Consensus 266 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 66888888887 6667664 45667888888888776
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=6.4e-17 Score=172.98 Aligned_cols=219 Identities=22% Similarity=0.209 Sum_probs=149.7
Q ss_pred EEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc-C
Q 002265 499 RHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-P 577 (945)
Q Consensus 499 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p 577 (945)
+.+.....++..+|..+ .++|++|+++++. +..+.+..|..+++|++|+ +++|.+..+ |
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~------------l~~n~l~~~~~ 73 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR------ISHVPAASFRACRNLTILW------------LHSNVLARIDA 73 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC------CCEECTTTTTTCTTCCEEE------------CCSSCCCEECT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc------CCccCHHHcccCCCCCEEE------------CCCCccceeCH
Confidence 45566666666666543 4688888888876 3344555678888888888 666666666 5
Q ss_pred ccccccCccccccccccc-cccc-ChhhhcCCcccEEEecCCCCcccc-CcccccccCCCeeecCCCCCCccCcc-CCCC
Q 002265 578 KNVRKLIHLKYLNLSELG-IEIL-PETLCELYNLQKLDIRRCRNLREL-PAGIGKLMNMRSLLNGETYSLKYMPI-GISK 653 (945)
Q Consensus 578 ~~i~~L~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~ 653 (945)
..++.+++|++|++++|. +..+ |..+..+++|++|++++|. +..+ |..+.++++|++|++++| .+..+|. .++.
T Consensus 74 ~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 151 (285)
T 1ozn_A 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRD 151 (285)
T ss_dssp TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhcc
Confidence 678888888888888886 7766 6678888888888888887 4444 556778888888888887 4555554 3677
Q ss_pred CCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccc
Q 002265 654 LTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGR 733 (945)
Q Consensus 654 L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 733 (945)
+++|++|++..+.....+. ..+..+++|+.|+++.|.+...
T Consensus 152 l~~L~~L~l~~n~l~~~~~---------------------------------~~~~~l~~L~~L~l~~n~l~~~------ 192 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPE---------------------------------RAFRGLHSLDRLLLHQNRVAHV------ 192 (285)
T ss_dssp CTTCCEEECCSSCCCEECT---------------------------------TTTTTCTTCCEEECCSSCCCEE------
T ss_pred CCCccEEECCCCcccccCH---------------------------------HHhcCccccCEEECCCCccccc------
Confidence 7777777765544322111 1234456677777766653221
Q ss_pred cCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCCCC
Q 002265 734 RKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCVDC 786 (945)
Q Consensus 734 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~ 786 (945)
.+..+..+++|+.|++++|....+|. .+..+++|+.|++++|+..
T Consensus 193 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 193 --------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred --------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 12345556778888888877766664 5778889999999888643
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=2.2e-19 Score=206.71 Aligned_cols=360 Identities=18% Similarity=0.105 Sum_probs=223.6
Q ss_pred CcEEEEEeecCCCCCCC--ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 496 VKVRHLGLNFEGGDSFP--MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
..++++.+..+.+...+ ..+..+++|++|.++++... . .....++..+..+++|++|++++ |.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~-~~~~~l~~~l~~~~~L~~L~Ls~------------n~l 68 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-E-ARCKDISSALRVNPALAELNLRS------------NEL 68 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCC-H-HHHHHHHHHHHTCTTCCEEECTT------------CCC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCC-H-HHHHHHHHHHHhCCCcCEEeCCC------------CcC
Confidence 46788888887765332 22567889999999988721 1 01123566788899999999444 444
Q ss_pred ccc-Cccc-cccC----ccccccccccccc-----ccChhhhcCCcccEEEecCCCCcc-ccCcccc-----cccCCCee
Q 002265 574 REI-PKNV-RKLI----HLKYLNLSELGIE-----ILPETLCELYNLQKLDIRRCRNLR-ELPAGIG-----KLMNMRSL 636 (945)
Q Consensus 574 ~~l-p~~i-~~L~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~-~lP~~i~-----~L~~L~~L 636 (945)
... +..+ ..+. +|++|++++|.+. .+|..+.++++|++|++++|. +. ..+..+. ..++|++|
T Consensus 69 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L 147 (461)
T 1z7x_W 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKL 147 (461)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEE
Confidence 321 1222 2233 6999999999987 568889999999999999987 43 2222222 25679999
Q ss_pred ecCCCCCCc----cCccCCCCCCCCCcCCcccccCCcCCC--Ccc----cccccccCCCCCeEEEcCCCCCCChhhhhhc
Q 002265 637 LNGETYSLK----YMPIGISKLTSLRTLDRFVVGGGVDGS--NTC----RLESLKNLQLRGKCSIEGLSNVSHLDEAERS 706 (945)
Q Consensus 637 ~l~~~~~l~----~lp~~i~~L~~L~~L~~~~~~~~~~~~--~~~----~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~ 706 (945)
++++|.... .++..+..+++|++|++..+....... ... ....|+.|+++++ .+. ..-...+..
T Consensus 148 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~-----~~~~~~l~~ 221 (461)
T 1z7x_W 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVT-----SDNCRDLCG 221 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCB-----TTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCc-----HHHHHHHHH
Confidence 999984332 235556778899999988776432110 011 1347888887765 111 111123445
Q ss_pred ccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhc-CCCCCCccEEEEEeeCCCC-----CCcccccccCCcEEEE
Q 002265 707 QLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEA-LQPPLNLEEFGIVFYGGNI-----FPKWLTSLTNLRELRL 780 (945)
Q Consensus 707 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~L 780 (945)
.+..+++|+.|++++|.+.+ .....+... ....++|+.|++++|.... +|..+..+++|+.|++
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~----------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGD----------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHH----------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHhCCCccEEeccCCcCCh----------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 56788999999999887421 011222233 3467899999999987765 5677778999999999
Q ss_pred ecCCCCCc----CCC-C-Cccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccc
Q 002265 781 VSCVDCEH----LPP-L-GKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELE 853 (945)
Q Consensus 781 ~~~~~~~~----l~~-l-~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 853 (945)
++|..... +.. + ...+ |+.|++++|. +...+... ++..+..+++|++|+++++. +.
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~---------------l~~~l~~~~~L~~L~Ls~n~-i~ 354 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSH---------------FSSVLAQNRFLLELQISNNR-LE 354 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH---------------HHHHHHHCSSCCEEECCSSB-CH
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHH---------------HHHHHhhCCCccEEEccCCc-cc
Confidence 99853221 111 1 1235 8999998875 22111000 01123456889999998873 33
Q ss_pred cccccccccccccCCCcccccCCCCCC-CCCccceEeeccCcCCC-----CCCcCCCCCCCccEEEEeCCcc
Q 002265 854 EWNYRITRKENVSIMPQLPILEDHRTT-DIPRLSSLRIWYCPKLK-----VLPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 854 ~~~~~~~~~~~~~~lp~l~~~~~~~l~-~l~~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~ 919 (945)
.... ..+.. .+. ..++|+.|++++| .++ .+|..+..+++|++|++++|+.
T Consensus 355 ~~~~--------~~l~~-------~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 355 DAGV--------RELCQ-------GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHH--------HHHHH-------HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cccH--------HHHHH-------HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 2211 00000 011 1345888888888 455 5676666678888888888763
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=6.2e-16 Score=176.33 Aligned_cols=235 Identities=20% Similarity=0.272 Sum_probs=142.1
Q ss_pred cCCCcccccCccccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~ 645 (945)
..+..+..+|..+. .+|++|+|++|.|..++ ..+.++++|++|+|++|. +..++ ..+..+++|++|++++| .+.
T Consensus 50 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~ 125 (440)
T 3zyj_A 50 CVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLT 125 (440)
T ss_dssp CCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCS
T ss_pred eCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCC
Confidence 55666778887664 67888888888888655 678888888888888887 55555 56778888888888887 556
Q ss_pred cCcc-CCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccc
Q 002265 646 YMPI-GISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRV 724 (945)
Q Consensus 646 ~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 724 (945)
.+|. .+..+++|++|++..+.....+ ...+..+++|+.|+++.+..
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~---------------------------------~~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIP---------------------------------SYAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEEC---------------------------------TTTTTTCTTCCEEECCCCTT
T ss_pred eeCHhHhhccccCceeeCCCCcccccC---------------------------------HHHhhhCcccCEeCCCCCCC
Confidence 6654 4677777777776554422211 01233344555555544320
Q ss_pred cCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCCCCCcCCCCCccc-cceEee
Q 002265 725 VDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLEL 802 (945)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l 802 (945)
...+ +..+..+++|+.|++++|. +..+|.+..++ |+.|++
T Consensus 173 -------------------------------------l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 173 -------------------------------------LSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDL 214 (440)
T ss_dssp -------------------------------------CCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEEC
T ss_pred -------------------------------------cceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEEC
Confidence 0111 2234455666666666653 34555555666 666666
Q ss_pred ccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCC
Q 002265 803 GNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDI 882 (945)
Q Consensus 803 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l 882 (945)
+++. +..+.. ..+..+++|++|+++++. ++.+. ...+..+
T Consensus 215 s~N~-l~~~~~-------------------~~~~~l~~L~~L~L~~n~-l~~~~-------------------~~~~~~l 254 (440)
T 3zyj_A 215 SGNH-LSAIRP-------------------GSFQGLMHLQKLWMIQSQ-IQVIE-------------------RNAFDNL 254 (440)
T ss_dssp TTSC-CCEECT-------------------TTTTTCTTCCEEECTTCC-CCEEC-------------------TTSSTTC
T ss_pred CCCc-cCccCh-------------------hhhccCccCCEEECCCCc-eeEEC-------------------hhhhcCC
Confidence 6653 333321 113456777777777642 22211 1134455
Q ss_pred CccceEeeccCcCCCCCCc-CCCCCCCccEEEEeCCc
Q 002265 883 PRLSSLRIWYCPKLKVLPD-YLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 883 ~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 918 (945)
++|+.|+|++| .++.+|. .+..+++|+.|++++||
T Consensus 255 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 255 QSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 66777777777 5666664 34567777777777766
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=3.2e-18 Score=203.77 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=122.1
Q ss_pred CcEEEEEeecCCCCCC-CccccC-CC-ceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 496 VKVRHLGLNFEGGDSF-PMSICG-LD-RLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~-~~~~~~-~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
..++.+.+..+.+... +..+.. ++ +|++|.+.++..+ ....++....++++|++|++++|.+. +..
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~~~-------~~~ 180 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF----TTDGLLSIVTHCRKIKTLLMEESSFS-------EKD 180 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE----EHHHHHHHHHHCTTCSEEECTTCEEE-------CCC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc----CHHHHHHHHhhCCCCCEEECcccccc-------Ccc
Confidence 3466777766543311 122222 33 4888888776521 11224445567888888885555421 111
Q ss_pred ccccCccccccCccccccccccccc-----ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCC---
Q 002265 573 IREIPKNVRKLIHLKYLNLSELGIE-----ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSL--- 644 (945)
Q Consensus 573 l~~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l--- 644 (945)
...++.....+++|++|++++|.+. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+...
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccch
Confidence 1113333456778888888888775 455666778888888888876 6677877888888888888754322
Q ss_pred ccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEE
Q 002265 645 KYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLE 720 (945)
Q Consensus 645 ~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 720 (945)
...+..++.+++|+.|++..+.....+.....+++|++|++++|. +. .......+..+++|+.|++.
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~--------~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LE--------TEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CC--------HHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CC--------HHHHHHHHHhCcCCCEEecc
Confidence 233456777778887776665444444555567777777776552 10 11122234566667777666
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.6e-17 Score=180.53 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=123.5
Q ss_pred hhhHHHhccCCccceEeeccccccccccccCCCcccccC-ccccccCcccccccccccccccChhhhcCCcccEEEecCC
Q 002265 539 SILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-KNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRC 617 (945)
Q Consensus 539 ~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 617 (945)
..+...+..+++|++|+ +++|.+..++ ..++.+++|++|+|++|.+..+++ ++.+++|++|++++|
T Consensus 24 ~~~~~~~~~~~~L~~L~------------L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 24 QALASLRQSAWNVKELD------------LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp HHHHHHHTTGGGCSEEE------------CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred hhHHHHhccCCCCCEEE------------CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 33444455556666666 4444555444 356666666666666666665444 666666666666666
Q ss_pred CCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCC
Q 002265 618 RNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSN 696 (945)
Q Consensus 618 ~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~ 696 (945)
. +..+|. .++|++|++++| .+..+|.. .+++|++|++..+.....+ .....+.+|+.|+++++
T Consensus 91 ~-l~~l~~----~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-------- 154 (317)
T 3o53_A 91 Y-VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------- 154 (317)
T ss_dssp E-EEEEEE----CTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--------
T ss_pred c-cccccC----CCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--------
Confidence 5 544442 366666666666 33333322 2455666665555433321 22334555666655543
Q ss_pred CCChhhhhhccc-ccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCC
Q 002265 697 VSHLDEAERSQL-YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNL 775 (945)
Q Consensus 697 ~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 775 (945)
.+.......+ ..+++|+.|++++|.+... .....+++|+.|++++|....+|..+..+++|
T Consensus 155 --~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 216 (317)
T 3o53_A 155 --EIDTVNFAELAASSDTLEHLNLQYNFIYDV----------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (317)
T ss_dssp --CCCEEEGGGGGGGTTTCCEEECTTSCCCEE----------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred --CCCcccHHHHhhccCcCCEEECCCCcCccc----------------ccccccccCCEEECCCCcCCcchhhhcccCcc
Confidence 1111111222 3456777777777764321 12223667777777777777777777777778
Q ss_pred cEEEEecCCCCCcCCC-CCccc-cceEeecccc
Q 002265 776 RELRLVSCVDCEHLPP-LGKLA-LEKLELGNLK 806 (945)
Q Consensus 776 ~~L~L~~~~~~~~l~~-l~~l~-L~~L~l~~~~ 806 (945)
+.|++++|... .+|. +..++ |+.|++++++
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 88888777543 3333 55566 7777776654
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=2.7e-16 Score=170.06 Aligned_cols=227 Identities=16% Similarity=0.083 Sum_probs=166.9
Q ss_pred CCcEEEEEeecCCCCCCCcc-ccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFPMS-ICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++++.+..+.+..+|.. +.++++|++|+++++.... . ...+..+..+++|++|+ +++|.+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~-~~~~~~~~~~~~L~~L~------------Ls~n~i 90 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---K-GCCSQSDFGTTSLKYLD------------LSFNGV 90 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---E-EEEEHHHHSCSCCCEEE------------CCSCSE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---c-cCcccccccccccCEEE------------CCCCcc
Confidence 45789999999998888765 6899999999999886210 0 11134466799999999 777778
Q ss_pred cccCccccccCcccccccccccccccCh--hhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCc-cCccC
Q 002265 574 REIPKNVRKLIHLKYLNLSELGIEILPE--TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLK-YMPIG 650 (945)
Q Consensus 574 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~-~lp~~ 650 (945)
..+|..+..+++|++|++++|.+..+|. .+.++++|++|++++|......|..+..+++|++|++++|.... .+|..
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 8899999999999999999999998874 78999999999999998445566778899999999999995433 47888
Q ss_pred CCCCCCCCcCCcccccCCcC-CCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCC
Q 002265 651 ISKLTSLRTLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEG 729 (945)
Q Consensus 651 i~~L~~L~~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 729 (945)
++.+++|++|++..+..... +.. +..+++|+.|++++|.+....
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~----------------------------------~~~l~~L~~L~L~~N~l~~~~- 215 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTA----------------------------------FNSLSSLQVLNMSHNNFFSLD- 215 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTT----------------------------------TTTCTTCCEEECTTSCCSBCC-
T ss_pred HhhCcCCCEEECCCCCcCCcCHHH----------------------------------hcCCCCCCEEECCCCccCccC-
Confidence 99999999999877654332 122 233445555555555432211
Q ss_pred CccccCchhHHHHHhcCCCCCCccEEEEEeeCCCC-CCcccccc-cCCcEEEEecCCC
Q 002265 730 EEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNI-FPKWLTSL-TNLRELRLVSCVD 785 (945)
Q Consensus 730 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~~l-~~L~~L~L~~~~~ 785 (945)
...+..+++|+.|++++|.... .|..+..+ ++|+.|++++|..
T Consensus 216 -------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 216 -------------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp -------------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred -------------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 0123445667777777666544 35566666 4899999988863
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.8e-18 Score=199.14 Aligned_cols=358 Identities=16% Similarity=0.118 Sum_probs=221.5
Q ss_pred CcEEEEEeecCCCC-----CCCccccCCCceeEEEeccCCCCCCCchhh-hhHHHhccCC----ccceEeeccccccccc
Q 002265 496 VKVRHLGLNFEGGD-----SFPMSICGLDRLRSLLIYDRSSFNPSLNSS-ILSELFSKLV----CLRALVIRQSSLYFHP 565 (945)
Q Consensus 496 ~~~r~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~l~----~Lr~L~l~~~~~~~~~ 565 (945)
..++.+.+..+.+. .++..+..+++|++|+++++. +.. .+..++..++ +|++|++++|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~L~~n~----- 96 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE------LGDVGVHCVLQGLQTPSCKIQKLSLQNCC----- 96 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC------CHHHHHHHHHHTTCSTTCCCCEEECTTSC-----
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc------CChHHHHHHHHHHhhCCCceeEEEccCCC-----
Confidence 35778888888776 346677888999999999876 222 2334445555 79999955554
Q ss_pred cccCCCcccccCccccccCcccccccccccccc-cChhhh-----cCCcccEEEecCCCCcc-----ccCcccccccCCC
Q 002265 566 FHLDPNSIREIPKNVRKLIHLKYLNLSELGIEI-LPETLC-----ELYNLQKLDIRRCRNLR-----ELPAGIGKLMNMR 634 (945)
Q Consensus 566 l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~-----~L~~L~~L~L~~~~~l~-----~lP~~i~~L~~L~ 634 (945)
+.......+|..+..+++|++|++++|.+.. -+..+. .+++|++|++++|. +. .++..+..+++|+
T Consensus 97 --i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 97 --LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp --CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCC
T ss_pred --CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCC
Confidence 2222223577888999999999999999862 233332 25689999999997 43 3566677889999
Q ss_pred eeecCCCCCCccCccCCC-----CCCCCCcCCcccccCCcC-----CCCcccccccccCCCCCeEEEcCCCCCCChhhhh
Q 002265 635 SLLNGETYSLKYMPIGIS-----KLTSLRTLDRFVVGGGVD-----GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAE 704 (945)
Q Consensus 635 ~L~l~~~~~l~~lp~~i~-----~L~~L~~L~~~~~~~~~~-----~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~ 704 (945)
+|++++|......+..+. .+++|++|++..+..... +.....++.|+.|+++++ .+... ......
T Consensus 174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~----~~~~l~ 248 (461)
T 1z7x_W 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDV----GMAELC 248 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHH----HHHHHH
T ss_pred EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChH----HHHHHH
Confidence 999999853222122222 366899999888765432 222335677888878765 11100 001111
Q ss_pred hcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCC-Ccccc-----cccCCcEE
Q 002265 705 RSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIF-PKWLT-----SLTNLREL 778 (945)
Q Consensus 705 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~-----~l~~L~~L 778 (945)
......+++|+.|+++.|.+.. .....+...+..+++|+.|++++|..... +..+. ..++|+.|
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~----------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITA----------KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCH----------HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHhcCCCCceEEECcCCCCCH----------HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 2223357899999999887421 11223556666788999999998865321 11222 23699999
Q ss_pred EEecCCCCCc----CC-CCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCc-CCCccceeeccCccc
Q 002265 779 RLVSCVDCEH----LP-PLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVT-AFPKLKSLEIKGLDE 851 (945)
Q Consensus 779 ~L~~~~~~~~----l~-~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~ 851 (945)
++++|..... ++ .+..++ |+.|+++++. +...+...... .+. ..++|++|++++|.
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~---------------~l~~~~~~L~~L~L~~n~- 381 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ---------------GLGQPGSVLRVLWLADCD- 381 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH---------------HHTSTTCCCCEEECTTSC-
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHH---------------HHcCCCCceEEEECCCCC-
Confidence 9999974332 22 244567 9999998874 43322111100 011 26799999999974
Q ss_pred cccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCC---------CCcCCCCCCCccEEEEeCCc
Q 002265 852 LEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKV---------LPDYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 852 L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~---------lp~~~~~l~~L~~L~l~~c~ 918 (945)
+... ....+|. .+..+++|++|++++|+ +.. +|.. ..+|+.|.+.++.
T Consensus 382 i~~~--------~~~~l~~-------~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~---~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 382 VSDS--------SCSSLAA-------TLLANHSLRELDLSNNC-LGDAGILQLVESVRQP---GCLLEQLVLYDIY 438 (461)
T ss_dssp CCHH--------HHHHHHH-------HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTST---TCCCCEEECTTCC
T ss_pred CChh--------hHHHHHH-------HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccC---Ccchhheeecccc
Confidence 3210 0112222 23345669999999994 443 3432 3467777776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=1.2e-17 Score=181.51 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=166.3
Q ss_pred cCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccc
Q 002265 516 CGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELG 595 (945)
Q Consensus 516 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~ 595 (945)
..+++|++|+++++. +..+.+..|..+++|++|+ +++|.+..++. ++.+++|++|++++|.
T Consensus 31 ~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~------------Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 31 QSAWNVKELDLSGNP------LSQISAADLAPFTKLELLN------------LSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp TTGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEE------------CTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred ccCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEE------------CCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 456678888888776 2344566678888888888 55555555544 7778888888888888
Q ss_pred ccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCC-CC-
Q 002265 596 IEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDG-SN- 673 (945)
Q Consensus 596 i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~-~~- 673 (945)
++.+|. +++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|++|++..+...... ..
T Consensus 92 l~~l~~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccccC----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 776653 3788888888876 666654 34677888888887433333446777888888888777654432 11
Q ss_pred cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCcc
Q 002265 674 TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLE 753 (945)
Q Consensus 674 ~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 753 (945)
...++.|+.|+++++. +..+ .....+++|+.|++++|.+.. ++..+..+++|+
T Consensus 165 ~~~l~~L~~L~L~~N~-l~~~-----------~~~~~l~~L~~L~Ls~N~l~~---------------l~~~~~~l~~L~ 217 (317)
T 3o53_A 165 AASSDTLEHLNLQYNF-IYDV-----------KGQVVFAKLKTLDLSSNKLAF---------------MGPEFQSAAGVT 217 (317)
T ss_dssp GGGTTTCCEEECTTSC-CCEE-----------ECCCCCTTCCEEECCSSCCCE---------------ECGGGGGGTTCS
T ss_pred hhccCcCCEEECCCCc-Cccc-----------ccccccccCCEEECCCCcCCc---------------chhhhcccCccc
Confidence 2346777777777651 1111 122347889999999887532 122356678999
Q ss_pred EEEEEeeCCCCCCcccccccCCcEEEEecCCCC-CcCCC-CCccc-cceEeeccccCce
Q 002265 754 EFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDC-EHLPP-LGKLA-LEKLELGNLKSVK 809 (945)
Q Consensus 754 ~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~-L~~L~l~~~~~L~ 809 (945)
.|++++|....+|..+..+++|+.|++++|... ..+|. ++.++ |+.|++.++..++
T Consensus 218 ~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 999999998889999999999999999999765 33333 55677 8888887665443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.9e-16 Score=171.48 Aligned_cols=244 Identities=20% Similarity=0.215 Sum_probs=176.6
Q ss_pred cCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc--ccCcccc-------ccCcc
Q 002265 516 CGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR--EIPKNVR-------KLIHL 586 (945)
Q Consensus 516 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~--~lp~~i~-------~L~~L 586 (945)
...++|+.|.+.++.. . +|..+... |+.|+ ++++.+. .+|..+. .+.+|
T Consensus 40 ~~~~~L~~l~l~~n~l-------~-~p~~~~~~--L~~L~------------L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-------A-DLGQFTDI--IKSLS------------LKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp EEEEECTTHHHHCCTT-------C-CCHHHHHH--HHHCC------------CCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred ccCCCceeEeeccccc-------c-cHHHHHHH--Hhhcc------------cccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 4456677777776652 1 12222222 78888 4444443 3555555 78999
Q ss_pred ccccccccccc-ccChhh--hcCCcccEEEecCCCCccccCcccccc-----cCCCeeecCCCCCCccCc-cCCCCCCCC
Q 002265 587 KYLNLSELGIE-ILPETL--CELYNLQKLDIRRCRNLRELPAGIGKL-----MNMRSLLNGETYSLKYMP-IGISKLTSL 657 (945)
Q Consensus 587 ~~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lP~~i~~L-----~~L~~L~l~~~~~l~~lp-~~i~~L~~L 657 (945)
++|+|++|.+. .+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|++++|. +..+| ..++.+++|
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPAL 175 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCC
Confidence 99999999998 788877 899999999999998 76678888887 999999999995 45554 789999999
Q ss_pred CcCCcccccCCcC---CCC--cccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 658 RTLDRFVVGGGVD---GSN--TCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 658 ~~L~~~~~~~~~~---~~~--~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
++|++..+..... +.. ...+.+|+.|+++++ .+..+.......+..+++|+.|+++.|.+.+...
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 245 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-------GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG--- 245 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-------CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC---
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-------cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc---
Confidence 9999988763221 111 256788888888865 1222223333344578899999999998654220
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeecccc
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~ 806 (945)
...+..+++|+.|++++|....+|.++. ++|+.|++++|.. ..+|.+..++ |+.|++++.+
T Consensus 246 ----------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 ----------APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----------CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTCT
T ss_pred ----------hhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CCChhHhhCCCCCEEeccCCC
Confidence 1223456899999999999999998877 8999999999964 4457788899 9999998754
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=2e-16 Score=171.30 Aligned_cols=247 Identities=17% Similarity=0.143 Sum_probs=152.2
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccc--ccChhhh-------cCCcccEEEec
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE--ILPETLC-------ELYNLQKLDIR 615 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~ 615 (945)
++..+.|+.|+ +.++.+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|+++
T Consensus 39 ~~~~~~L~~l~------------l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 103 (312)
T 1wwl_A 39 YGGGRSLEYLL------------KRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103 (312)
T ss_dssp EEEEEECTTHH------------HHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE
T ss_pred EccCCCceeEe------------eccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc
Confidence 56667788887 666666 778777655 899999998885 5777776 78999999999
Q ss_pred CCCCccccCccc--ccccCCCeeecCCCCCCccCccCCCCC-----CCCCcCCcccccCCcCCCCcccccccccCCCCCe
Q 002265 616 RCRNLRELPAGI--GKLMNMRSLLNGETYSLKYMPIGISKL-----TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGK 688 (945)
Q Consensus 616 ~~~~l~~lP~~i--~~L~~L~~L~l~~~~~l~~lp~~i~~L-----~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 688 (945)
+|.....+|..+ ..+++|++|++++| .+..+|..++.+ ++|++|++..+.....+
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~----------------- 165 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS----------------- 165 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-----------------
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-----------------
Confidence 988445788876 88999999999888 455556555554 56666665544322211
Q ss_pred EEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcC--CCCCCccEEEEEeeCCCCCC
Q 002265 689 CSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL--QPPLNLEEFGIVFYGGNIFP 766 (945)
Q Consensus 689 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~lp 766 (945)
+..+..+++|+.|++++|.+.+ ....+..+ ..+++|+.|++++|....+|
T Consensus 166 ----------------~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 166 ----------------CEQVRVFPALSTLDLSDNPELG------------ERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp ----------------TTTCCCCSSCCEEECCSCTTCH------------HHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred ----------------HHHhccCCCCCEEECCCCCcCc------------chHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 1234455666777776665211 11223333 55667777777766655332
Q ss_pred c---c-cccccCCcEEEEecCCCCCcCCCCCccccceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccc
Q 002265 767 K---W-LTSLTNLRELRLVSCVDCEHLPPLGKLALEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLK 842 (945)
Q Consensus 767 ~---~-~~~l~~L~~L~L~~~~~~~~l~~l~~l~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 842 (945)
. . +..+++|+.|++++|......|. .....+++|+
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------------------------~~~~~l~~L~ 256 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGA-----------------------------------------PSCDWPSQLN 256 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------------------------SCCCCCTTCC
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccch-----------------------------------------hhhhhcCCCC
Confidence 2 1 23557777777777653332211 0012345666
Q ss_pred eeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCCcCCCCCCCccEEEEeCCc
Q 002265 843 SLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLPDYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 843 ~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 918 (945)
+|+++++. ++. +|. .+. ++|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus 257 ~L~Ls~N~-l~~-------------ip~-------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 257 SLNLSFTG-LKQ-------------VPK-------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECTTSC-CSS-------------CCS-------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred EEECCCCc-cCh-------------hhh-------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 66666642 222 121 111 44777777777 5666665 6677777777777775
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=2.6e-15 Score=160.44 Aligned_cols=211 Identities=19% Similarity=0.169 Sum_probs=132.2
Q ss_pred cCCCcccccCccccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCcccc-CcccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLREL-PAGIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~ 645 (945)
.+++.+..+|..+ ..+|++|++++|.+..+| ..+.++++|++|++++|. +..+ |..+..+++|++|++++|..+.
T Consensus 18 c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 18 CPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 4445555555443 346666666666666554 345666666666666665 3333 4556666666666666664344
Q ss_pred cC-ccCCCCCCCCCcCCcccccCCcC-CCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEecc
Q 002265 646 YM-PIGISKLTSLRTLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGR 723 (945)
Q Consensus 646 ~l-p~~i~~L~~L~~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 723 (945)
.+ |..+..+++|++|++..+..... +.....+.+|+.|+++++ .+. ......+..+++|+.|+++.|.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~---------~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQ---------ALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCC---------CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-ccc---------ccCHhHhccCCCccEEECCCCc
Confidence 44 44566666666666665554333 223344556666665543 111 1112235677889999999887
Q ss_pred ccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCC-CcccccccCCcEEEEecCCCCCcCCC--CCccc-cce
Q 002265 724 VVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCVDCEHLPP--LGKLA-LEK 799 (945)
Q Consensus 724 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~~ 799 (945)
+...+ ...+..+++|+.|++++|....+ |.++..+++|+.|++++|.... ++. +..++ |+.
T Consensus 165 l~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 165 ISSVP--------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQY 229 (285)
T ss_dssp CCEEC--------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCE
T ss_pred ccccC--------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCE
Confidence 53221 12356688999999999987665 7888899999999999996544 443 67788 999
Q ss_pred Eeecccc
Q 002265 800 LELGNLK 806 (945)
Q Consensus 800 L~l~~~~ 806 (945)
|++++++
T Consensus 230 L~l~~N~ 236 (285)
T 1ozn_A 230 LRLNDNP 236 (285)
T ss_dssp EECCSSC
T ss_pred EeccCCC
Confidence 9998765
No 72
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.60 E-value=4.4e-15 Score=131.96 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhhHHHH
Q 002265 4 AIVSFLLDQLKSIPQDQVKEKWRLVTGVEQEVEKLTKNLRAIQAVLEDAEQR--QMKQDKVVTLWLDQLRDASYDMEDVL 81 (945)
Q Consensus 4 ~~v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~--~~~~~~~~~~wl~~l~~~~~d~ed~l 81 (945)
|+|+++++||++ ++.+|+.++.|+++++++|+++|++|++||++|+.+ +.. +++++.|+++||+++||+||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQL-DSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999988 999999999999999999999999999999999987 445 8999999999999999999999
Q ss_pred HHHHHHHH
Q 002265 82 DEWITETR 89 (945)
Q Consensus 82 d~~~~~~~ 89 (945)
|+|.++..
T Consensus 76 D~f~~~~~ 83 (115)
T 3qfl_A 76 DKFLVQVD 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999874
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=3.5e-17 Score=194.82 Aligned_cols=373 Identities=16% Similarity=0.113 Sum_probs=200.6
Q ss_pred CcEEEEEeecCCCCCC-Ccccc-CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 496 VKVRHLGLNFEGGDSF-PMSIC-GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
..++++.+..+..... +..+. .+++|++|.+.++..+ ....++..+.++++|++|++++|.+. +...
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~i~-------~~~~ 173 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF----STDGLAAIAATCRNLKELDLRESDVD-------DVSG 173 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE----EHHHHHHHHHHCTTCCEEECTTCEEE-------CCCG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC----CHHHHHHHHHhCCCCCEEeCcCCccC-------Ccch
Confidence 3577788877654321 22332 5889999999887421 11235566678999999996666522 2222
Q ss_pred cccCccccccCccccccccccc--cc--ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCC------
Q 002265 574 REIPKNVRKLIHLKYLNLSELG--IE--ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYS------ 643 (945)
Q Consensus 574 ~~lp~~i~~L~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~------ 643 (945)
..++.-...+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|..+.++++|++|+++.+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 2233334467899999999986 32 3444456789999999999977878888889999999999876632
Q ss_pred CccCccCCCCCCCCCcC-CcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEec
Q 002265 644 LKYMPIGISKLTSLRTL-DRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFG 722 (945)
Q Consensus 644 l~~lp~~i~~L~~L~~L-~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 722 (945)
+..++..++++++|+.| ..........+.....+++|+.|+++++- +. .......+..+++|+.|++..+
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--------~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--------SYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CC--------HHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CC--------HHHHHHHHhcCCCcCEEeCcCc
Confidence 23344466777888877 33322222222333356778888777652 11 1122233556777888887765
Q ss_pred cccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeC------CCCCCc-----ccccccCCcEEEEecCCCCC-cCC
Q 002265 723 RVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYG------GNIFPK-----WLTSLTNLRELRLVSCVDCE-HLP 790 (945)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~lp~-----~~~~l~~L~~L~L~~~~~~~-~l~ 790 (945)
- . ...+......+++|+.|++.++. ...+.. ....+++|+.|.+..+.... .+.
T Consensus 325 ~-~-------------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 325 I-E-------------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp G-H-------------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred c-C-------------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence 2 0 11122222235667777775421 111111 11135667777554433211 111
Q ss_pred CCC-ccc-cceEeec-----cccCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccccc
Q 002265 791 PLG-KLA-LEKLELG-----NLKSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITRKE 863 (945)
Q Consensus 791 ~l~-~l~-L~~L~l~-----~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~ 863 (945)
.+. .+| |+.|+++ +|..+...+... ..+..+..+++|++|++++ ++......... .
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~--------------~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~-~ 453 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI--------------GFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG-T 453 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH--------------HHHHHHHHCTTCCEEECCS--SCCHHHHHHHH-H
T ss_pred HHHhhCCCcceeEeecccCCCcccccCCchhh--------------HHHHHHhhCCCccEEeecC--cccHHHHHHHH-H
Confidence 122 255 6666666 344333211000 0000012344455555533 11110000000 0
Q ss_pred cccCCCcccccCCC-------CC-CCCCccceEeeccCcCCCC--CCcCCCCCCCccEEEEeCCcch
Q 002265 864 NVSIMPQLPILEDH-------RT-TDIPRLSSLRIWYCPKLKV--LPDYLLRTTTLQKLTIWGCPLL 920 (945)
Q Consensus 864 ~~~~lp~l~~~~~~-------~l-~~l~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~L 920 (945)
....+..|.+.+|. .+ ..+|+|+.|+|++|+. .. ++..+..+++|+.|++++|+..
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 00111111111111 01 3367799999999975 32 2234455889999999999873
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.2e-15 Score=175.61 Aligned_cols=193 Identities=15% Similarity=0.093 Sum_probs=98.9
Q ss_pred cccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCC
Q 002265 579 NVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLR 658 (945)
Q Consensus 579 ~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 658 (945)
.++.+++|++|+|++|.+...++ ++.+++|++|+|++|. +..+|. .++|++|++++| .+..+|. ..+++|+
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N-~l~~~~~--~~l~~L~ 123 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANN-NISRVSC--SRGQGKK 123 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSS-CCCCEEE--CCCSSCE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCC-cCCCCCc--cccCCCC
Confidence 34444444444444444443332 4444444444444443 333332 244444444444 2222222 1234444
Q ss_pred cCCcccccCCcC-CCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccc-cCCCCCeEEEEeccccCCCCCccccCc
Q 002265 659 TLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLY-NKKNLLRLHLEFGRVVDGEGEEGRRKN 736 (945)
Q Consensus 659 ~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~ 736 (945)
.|++..+..... +.....++.|+.|+|+++ .+....+..+. .+++|+.|++++|.+.+.
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N----------~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------- 184 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLN----------EIDTVNFAELAASSDTLEHLNLQYNFIYDV--------- 184 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTS----------CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCC----------CCCCcChHHHhhhCCcccEEecCCCccccc---------
Confidence 444444432222 122333445555554433 11111122232 456777777777764321
Q ss_pred hhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeecccc
Q 002265 737 EKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 737 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~ 806 (945)
.....+++|+.|++++|....+|..+..+++|+.|+|++|....-.+.++.++ |+.|++++++
T Consensus 185 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 -------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 12334677888888888777777777788888888888876543223366677 8888887764
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.1e-16 Score=180.50 Aligned_cols=233 Identities=13% Similarity=0.053 Sum_probs=157.4
Q ss_pred CCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccc
Q 002265 518 LDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE 597 (945)
Q Consensus 518 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~ 597 (945)
+++|++|+++++. +..+++..|..+++|++|+ +++|.+..+++ ++.+++|++|+|++|.+.
T Consensus 33 ~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 33 AWNVKELDLSGNP------LSQISAADLAPFTKLELLN------------LSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp GGGCCEEECCSSC------CCCCCGGGGTTCTTCCEEE------------CTTSCCEEEEE-CTTCTTCCEEECCSSEEE
T ss_pred CCCccEEEeeCCc------CCCCCHHHHhCCCCCCEEE------------eeCCCCCCCcc-cccCCCCCEEEecCCcCC
Confidence 3478888887776 2234556677788888888 55555554444 777788888888888777
Q ss_pred ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcC-CCCc-c
Q 002265 598 ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVD-GSNT-C 675 (945)
Q Consensus 598 ~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~-~~~~-~ 675 (945)
.+|. .++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|++|++..+..... +... .
T Consensus 94 ~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 94 ELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp EEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 6664 3778888888876 555554 2467788888877744444455677778888887777664432 2222 2
Q ss_pred cccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEE
Q 002265 676 RLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEF 755 (945)
Q Consensus 676 ~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 755 (945)
.++.|+.|+|+++. +..+ .....+++|+.|++++|.+.+ ++..+..+++|+.|
T Consensus 167 ~l~~L~~L~Ls~N~-l~~~-----------~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~l~~L~~L 219 (487)
T 3oja_A 167 SSDTLEHLNLQYNF-IYDV-----------KGQVVFAKLKTLDLSSNKLAF---------------MGPEFQSAAGVTWI 219 (487)
T ss_dssp GTTTCCEEECTTSC-CCEE-----------ECCCCCTTCCEEECCSSCCCE---------------ECGGGGGGTTCSEE
T ss_pred hCCcccEEecCCCc-cccc-----------cccccCCCCCEEECCCCCCCC---------------CCHhHcCCCCccEE
Confidence 56777777777551 1111 123357889999999887542 12235667899999
Q ss_pred EEEeeCCCCCCcccccccCCcEEEEecCCCC-CcCCC-CCccc-cceEeec
Q 002265 756 GIVFYGGNIFPKWLTSLTNLRELRLVSCVDC-EHLPP-LGKLA-LEKLELG 803 (945)
Q Consensus 756 ~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~-L~~L~l~ 803 (945)
++++|....+|.++..+++|+.|++++|... ..+|. ++.++ |+.|.+.
T Consensus 220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999998889999999999999999999755 33332 44555 6666554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=8e-15 Score=156.55 Aligned_cols=199 Identities=21% Similarity=0.165 Sum_probs=135.1
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCcccc
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLREL 623 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l 623 (945)
+.++++|+.++ +.++.+..+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|. +..+
T Consensus 6 ~~~l~~l~~l~------------~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVN------------CDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp EECSTTCCEEE------------CTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEE
T ss_pred ccccCCccEEE------------CCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcc
Confidence 56778888888 77777788887764 6889999999988865 4678889999999999887 7777
Q ss_pred CcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCC-CCcccccccccCCCCCeEEEcCCCCCCChhh
Q 002265 624 PAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHLDE 702 (945)
Q Consensus 624 P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~ 702 (945)
|.. +.+++|++|++++| .+..+|..+..+++|++|++..+.....+ .....+.+|+.|+|+++ .+..+
T Consensus 71 ~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~-------- 139 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTL-------- 139 (290)
T ss_dssp ECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCC--------
T ss_pred cCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCcc--------
Confidence 764 78889999999888 67788888888888888888777655443 33445666666666644 11111
Q ss_pred hhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEec
Q 002265 703 AERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVS 782 (945)
Q Consensus 703 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 782 (945)
....+..+++|+.|+++.|.+...+ ...+..+++|+.|++++|....+|.++..+.+|+.|+|.+
T Consensus 140 -~~~~~~~l~~L~~L~L~~N~l~~l~--------------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 140 -PPGLLTPTPKLEKLSLANNNLTELP--------------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp -CTTTTTTCTTCCEEECTTSCCSCCC--------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred -ChhhcccccCCCEEECCCCcCCccC--------------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 1123445566666666666543221 0123445666666666666666666666666666666666
Q ss_pred CC
Q 002265 783 CV 784 (945)
Q Consensus 783 ~~ 784 (945)
|+
T Consensus 205 Np 206 (290)
T 1p9a_G 205 NP 206 (290)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=4.2e-15 Score=160.39 Aligned_cols=190 Identities=22% Similarity=0.166 Sum_probs=128.5
Q ss_pred ccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc
Q 002265 546 SKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA 625 (945)
Q Consensus 546 ~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~ 625 (945)
..+++|+.|+ ++++.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|. +..+|
T Consensus 38 ~~l~~L~~L~------------l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~- 101 (308)
T 1h6u_A 38 ADLDGITTLS------------AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS- 101 (308)
T ss_dssp HHHHTCCEEE------------CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred HHcCCcCEEE------------eeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-
Confidence 4567888888 6677777776 58889999999999999998887 8999999999999987 77776
Q ss_pred ccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhh
Q 002265 626 GIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAER 705 (945)
Q Consensus 626 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~ 705 (945)
.+..+++|++|++++| .+..+|. ++.+++|+.|++..+.....+.
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------------------------------- 146 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP--------------------------------- 146 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG---------------------------------
T ss_pred hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc---------------------------------
Confidence 5888999999999988 5666664 7788888888776654333211
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCC
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVD 785 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 785 (945)
+..+++|+.|+++.|.+.+. ..+..+++|+.|++++|....+|. +..+++|+.|++++|..
T Consensus 147 --l~~l~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 147 --LAGLTNLQYLSIGNAQVSDL----------------TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp --GGGCTTCCEEECCSSCCCCC----------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred --ccCCCCccEEEccCCcCCCC----------------hhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCcc
Confidence 23344555555555543211 013445566666666665555544 55666677777766643
Q ss_pred CCcCCCCCccc-cceEeecccc
Q 002265 786 CEHLPPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 786 ~~~l~~l~~l~-L~~L~l~~~~ 806 (945)
..++.+..++ |+.|+++++.
T Consensus 208 -~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 -SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CBCGGGTTCTTCCEEEEEEEE
T ss_pred -CccccccCCCCCCEEEccCCe
Confidence 3334456666 6666666554
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=3e-14 Score=147.82 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=50.3
Q ss_pred ccccCccccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCc
Q 002265 573 IREIPKNVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMP 648 (945)
Q Consensus 573 l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp 648 (945)
+..+|. +. .+|++|++++|.++.+|. .++++++|++|++++|..+..+|. .+.++++|++|++++|+.+..+|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 566776 43 378888888888887765 677888888888888754666665 56777777777777633444433
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=1.9e-14 Score=155.28 Aligned_cols=145 Identities=20% Similarity=0.241 Sum_probs=101.2
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE 575 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~ 575 (945)
.+++++.+..+.+..++ .+..+++|++|+++++.. ..+.+ +..+++|++|+ +++|.+..
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i------~~~~~--~~~l~~L~~L~------------L~~n~l~~ 99 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI------TDLAP--LKNLTKITELE------------LSGNPLKN 99 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC------CCCGG--GTTCCSCCEEE------------CCSCCCSC
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC------CCChh--HccCCCCCEEE------------ccCCcCCC
Confidence 35677777777766655 566778888888877752 22222 67778888888 55555555
Q ss_pred cCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCC
Q 002265 576 IPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLT 655 (945)
Q Consensus 576 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 655 (945)
+| .++.+.+|++|++++|.+..+|. ++.+++|++|++++|. +..+|. +..+++|++|++++| .+..+|. +..++
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~ 173 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLS 173 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCC
Confidence 54 57777888888888888877765 7788888888888876 666665 777888888888877 4555554 67777
Q ss_pred CCCcCCcccccC
Q 002265 656 SLRTLDRFVVGG 667 (945)
Q Consensus 656 ~L~~L~~~~~~~ 667 (945)
+|+.|++..+..
T Consensus 174 ~L~~L~l~~n~l 185 (308)
T 1h6u_A 174 KLTTLKADDNKI 185 (308)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcc
Confidence 777777665543
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=9.8e-15 Score=155.12 Aligned_cols=198 Identities=19% Similarity=0.177 Sum_probs=121.0
Q ss_pred CccceEeeccccccccccccCCCcccccCc-cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccC-c
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELP-A 625 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~ 625 (945)
+.|++|+ ++++.+..++. .++.+.+|++|++++|.+..+|. .+.++++|++|++++|. +..+| .
T Consensus 28 ~~l~~L~------------ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 94 (276)
T 2z62_A 28 FSTKNLD------------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG 94 (276)
T ss_dssp TTCCEEE------------CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT
T ss_pred CCccEEE------------CCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChh
Confidence 3678888 66666666654 67778888888888888876654 67888888888888877 54444 5
Q ss_pred ccccccCCCeeecCCCCCCccCcc-CCCCCCCCCcCCcccccCCc--CCCCcccccccccCCCCCeEEEcCCCCCCChhh
Q 002265 626 GIGKLMNMRSLLNGETYSLKYMPI-GISKLTSLRTLDRFVVGGGV--DGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDE 702 (945)
Q Consensus 626 ~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~--~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~ 702 (945)
.+.++++|++|++++| .+..++. .++.+++|++|++..+.... .+.....+.+|+.|+++++ .+. .
T Consensus 95 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~---------~ 163 (276)
T 2z62_A 95 AFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQ---------S 163 (276)
T ss_dssp TTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCC---------E
T ss_pred hhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCC---------c
Confidence 6778888888888877 3444443 57778888888777666443 2344455566666666544 111 1
Q ss_pred hhhcccccCCCCC----eEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcc-cccccCCcE
Q 002265 703 AERSQLYNKKNLL----RLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKW-LTSLTNLRE 777 (945)
Q Consensus 703 ~~~~~l~~~~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~ 777 (945)
.....+..+.+|+ .|+++.|.+... ........+|+.|++++|....+|.. +..+++|+.
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~---------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFI---------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEE---------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCHHHhhhhhhccccceeeecCCCccccc---------------CccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence 1111222233333 566666653221 11112223677777777766666554 356777777
Q ss_pred EEEecCCC
Q 002265 778 LRLVSCVD 785 (945)
Q Consensus 778 L~L~~~~~ 785 (945)
|++++|+.
T Consensus 229 L~l~~N~~ 236 (276)
T 2z62_A 229 IWLHTNPW 236 (276)
T ss_dssp EECCSSCB
T ss_pred EEccCCcc
Confidence 77777653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=7.7e-15 Score=152.25 Aligned_cols=136 Identities=17% Similarity=0.252 Sum_probs=90.2
Q ss_pred CCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc-ccccCc-cccccCc
Q 002265 508 GDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS-IREIPK-NVRKLIH 585 (945)
Q Consensus 508 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~-l~~lp~-~i~~L~~ 585 (945)
...+|. + .++|++|+++++. +..+.+..|..+++|++|+ +++|. +..+|. .+..+++
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~------l~~i~~~~~~~l~~L~~L~------------l~~n~~l~~i~~~~f~~l~~ 81 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETH------LRTIPSHAFSNLPNISRIY------------VSIDVTLQQLESHSFYNLSK 81 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCC------CSEECTTTTTTCTTCCEEE------------EECCSSCCEECTTTEESCTT
T ss_pred ccccCC-C--CCcccEEEEeCCc------ceEECHHHccCCCCCcEEe------------CCCCCCcceeCHhHcCCCcC
Confidence 445554 2 2377778777766 2344444577777888888 55554 566654 5677778
Q ss_pred cccccccc-ccccccC-hhhhcCCcccEEEecCCCCccccCcccccccCCC---eeecCCCCCCccCccC-CCCCCCCC-
Q 002265 586 LKYLNLSE-LGIEILP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMR---SLLNGETYSLKYMPIG-ISKLTSLR- 658 (945)
Q Consensus 586 L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~---~L~l~~~~~l~~lp~~-i~~L~~L~- 658 (945)
|++|++++ |.++.+| ..+.++++|++|++++|. +..+|. +..+++|+ +|++++|..+..+|.. +..+++|+
T Consensus 82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 88888877 7777666 356777888888888776 666776 77777777 7888777455555543 66666666
Q ss_pred cCCccccc
Q 002265 659 TLDRFVVG 666 (945)
Q Consensus 659 ~L~~~~~~ 666 (945)
+|++..+.
T Consensus 160 ~L~l~~n~ 167 (239)
T 2xwt_C 160 TLKLYNNG 167 (239)
T ss_dssp EEECCSCC
T ss_pred EEEcCCCC
Confidence 66654443
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=2.9e-16 Score=186.77 Aligned_cols=359 Identities=15% Similarity=0.062 Sum_probs=204.5
Q ss_pred CCCceeEEEeccCCCCCCCchhhhhHHHhcc-CC-ccceEeeccccccccccccCCCcccccCccccccCcccccccccc
Q 002265 517 GLDRLRSLLIYDRSSFNPSLNSSILSELFSK-LV-CLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSEL 594 (945)
Q Consensus 517 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-l~-~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~ 594 (945)
.+++|++|+++++.. .......+.. ++ +|++|++++|.. + ....++..+..+++|++|+|++|
T Consensus 110 ~~~~L~~L~L~~~~i------~~~~~~~l~~~~~~~L~~L~L~~~~~------~---~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIV------SDLDLDRLAKARADDLETLKLDKCSG------F---TTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp HCTTCCEEEEESCBC------CHHHHHHHHHHHGGGCCEEEEESCEE------E---EHHHHHHHHHHCTTCSEEECTTC
T ss_pred hCCCCCeEEeeccEe------cHHHHHHHHHhccccCcEEECcCCCC------c---CHHHHHHHHhhCCCCCEEECccc
Confidence 688999999998741 1222233333 33 499999655431 0 01123333457899999999999
Q ss_pred cccc-----cChhhhcCCcccEEEecCCCCc----cccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccc
Q 002265 595 GIEI-----LPETLCELYNLQKLDIRRCRNL----RELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVV 665 (945)
Q Consensus 595 ~i~~-----lp~~i~~L~~L~~L~L~~~~~l----~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~ 665 (945)
.+.. ++..+.++++|++|++++|..- ..++..+.++++|++|++++| .+..+|..++.+++|+.|++...
T Consensus 175 ~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBC
T ss_pred cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccccc
Confidence 8752 4556678999999999998732 355666678999999999998 56668888899999999987643
Q ss_pred cCC----cCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHH
Q 002265 666 GGG----VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQ 741 (945)
Q Consensus 666 ~~~----~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 741 (945)
... ........+.+|+.|.+++. .....+..+..+++|++|++++|.+. ...
T Consensus 254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------~~~~l~~~~~~~~~L~~L~Ls~~~l~-------------~~~ 309 (592)
T 3ogk_B 254 NEDIGMPEKYMNLVFPRKLCRLGLSYM-----------GPNEMPILFPFAAQIRKLDLLYALLE-------------TED 309 (592)
T ss_dssp CCCTTCTTSSSCCCCCTTCCEEEETTC-----------CTTTGGGGGGGGGGCCEEEETTCCCC-------------HHH
T ss_pred ccccchHHHHHHhhccccccccCcccc-----------chhHHHHHHhhcCCCcEEecCCCcCC-------------HHH
Confidence 221 11122334445555444321 11233445667889999999988632 233
Q ss_pred HHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEEEec----------CCCCCc--CCC-CCccc-cceEeecc--
Q 002265 742 LLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELRLVS----------CVDCEH--LPP-LGKLA-LEKLELGN-- 804 (945)
Q Consensus 742 ~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~----------~~~~~~--l~~-l~~l~-L~~L~l~~-- 804 (945)
....+..+++|+.|++..+... .++.....+++|+.|++++ |..+.. ++. ...+| |+.|.++.
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 3344566788888888733221 1233344677888888884 544332 111 22356 77776621
Q ss_pred ------------ccCceEeCccccC-CCCCCCCCCCCCCCCCcCcCCCccceeeccCccc-cccccccccccccccCCCc
Q 002265 805 ------------LKSVKRLGNEFLG-IEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDE-LEEWNYRITRKENVSIMPQ 870 (945)
Q Consensus 805 ------------~~~L~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-L~~~~~~~~~~~~~~~lp~ 870 (945)
|++|+.+...... ...+ ...+.+...+..+..+++|++|++++|.+ +..-..... ......+..
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l-~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~ 467 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERI-TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRW 467 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCC-SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccc-cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceE
Confidence 3333333221100 0000 00000000111134588899999876543 211100000 000111222
Q ss_pred ccccCCC--------CCCCCCccceEeeccCcCCCC--CCcCCCCCCCccEEEEeCCc
Q 002265 871 LPILEDH--------RTTDIPRLSSLRIWYCPKLKV--LPDYLLRTTTLQKLTIWGCP 918 (945)
Q Consensus 871 l~~~~~~--------~l~~l~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~ 918 (945)
|.+..|. .+..+++|++|+|++|+ ++. ++....++++|+.|++++|.
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 3333222 12456789999999997 442 44444567899999999997
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=7.4e-15 Score=156.07 Aligned_cols=127 Identities=26% Similarity=0.238 Sum_probs=61.1
Q ss_pred ceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc-cccccCcccccccccccccc
Q 002265 520 RLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLNLSELGIEI 598 (945)
Q Consensus 520 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~ 598 (945)
+|++|+++++. +..+.+..|.++++|++|+ +++|.+..++. .++.+++|++|++++|.+..
T Consensus 29 ~l~~L~ls~n~------l~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 29 STKNLDLSFNP------LRHLGSYSFFSFPELQVLD------------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp TCCEEECTTCC------CCEECTTTTTTCTTCSEEE------------CTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CccEEECCCCc------ccccCHhHhccccCCcEEE------------CCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 45555555544 1122233345555555555 33334444432 34555555555555555553
Q ss_pred cC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCcc--CccCCCCCCCCCcCCccccc
Q 002265 599 LP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKY--MPIGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 599 lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~~~~~~ 666 (945)
+| ..+.++++|++|++++|. +..++. .+..+++|++|++++|. +.. +|..++.+++|++|++..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC
Confidence 33 345555555555555554 333333 34555555555555552 222 34455555555555555444
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=3.6e-14 Score=150.14 Aligned_cols=168 Identities=26% Similarity=0.345 Sum_probs=118.0
Q ss_pred EEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC
Q 002265 498 VRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP 577 (945)
Q Consensus 498 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp 577 (945)
.+.+.+..+.+..+|..+. ++++.|+++++. +..+.+..|.++++|++|+ +++|.+..+|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~------------l~~n~l~~i~ 77 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLY------------LNDNKLQTLP 77 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC------CSCCCTTSSSSCTTCCEEE------------CCSSCCSCCC
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC------CCeeCHHHhcCCCCCCEEE------------CCCCccCeeC
Confidence 3456777777777776543 678888888876 2233455678888899988 6666677777
Q ss_pred cc-ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCccC-CCC
Q 002265 578 KN-VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMPIG-ISK 653 (945)
Q Consensus 578 ~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 653 (945)
.. +..+++|++|++++|.+..+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 155 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK 155 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC
Confidence 65 47788899999998888877754 5788889999998887 555554 4678888999998888 56666654 678
Q ss_pred CCCCCcCCcccccCCcCCC-CcccccccccCCCCC
Q 002265 654 LTSLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRG 687 (945)
Q Consensus 654 L~~L~~L~~~~~~~~~~~~-~~~~l~~L~~L~L~~ 687 (945)
+++|+.|++..+.....+. ....+.+|+.|++++
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 8888888877665444332 233445555555554
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=7.9e-14 Score=147.46 Aligned_cols=194 Identities=22% Similarity=0.253 Sum_probs=122.0
Q ss_pred CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCccc
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPAGI 627 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i 627 (945)
..++.++ ++++.+..+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|. +..+|..+
T Consensus 16 ~~~~~l~------------~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~ 80 (270)
T 2o6q_A 16 NNKNSVD------------CSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI 80 (270)
T ss_dssp TTTTEEE------------CTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT
T ss_pred CCCCEEE------------ccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh
Confidence 3467777 67777778887664 678899999998887775 68889999999998887 77777654
Q ss_pred -ccccCCCeeecCCCCCCccCcc-CCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhh
Q 002265 628 -GKLMNMRSLLNGETYSLKYMPI-GISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAER 705 (945)
Q Consensus 628 -~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~ 705 (945)
..+++|++|++++| .+..+|. .+..+++|++|++..+.....+.
T Consensus 81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------------- 126 (270)
T 2o6q_A 81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPP--------------------------------- 126 (270)
T ss_dssp TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------------------------------
T ss_pred hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCH---------------------------------
Confidence 67889999999888 4555654 35777777777766554332221
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCC
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCV 784 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 784 (945)
..+..+++|+.|+++.|.+...+ ...+..+++|+.|+++++....+|. .+..+++|+.|++++|.
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLP--------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhCcCcCCCEEECCCCcCCccC--------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 11233445555555555432211 0123445566666666665555543 35566667777776664
Q ss_pred CCCcCCC--CCccc-cceEeecccc
Q 002265 785 DCEHLPP--LGKLA-LEKLELGNLK 806 (945)
Q Consensus 785 ~~~~l~~--l~~l~-L~~L~l~~~~ 806 (945)
.. .+|. +..++ |+.|++++++
T Consensus 193 l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 LK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-cCCHHHhccccCCCEEEecCCC
Confidence 32 3332 45556 6666666543
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=4.3e-14 Score=150.84 Aligned_cols=170 Identities=20% Similarity=0.176 Sum_probs=128.7
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE 575 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~ 575 (945)
..++.+.+..+++..+|..+. ++++.|+++++. +..+.+..|..+++|++|+ +++|.+..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~------------L~~n~l~~ 69 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL------LYTFSLATLMPYTRLTQLN------------LDRAELTK 69 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEE------------CTTSCCCE
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc------CCccCHHHhhcCCCCCEEE------------CCCCccCc
Confidence 456778888888888776653 689999998887 3344566788899999999 66666666
Q ss_pred cCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCccCccC-CCC
Q 002265 576 IPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKYMPIG-ISK 653 (945)
Q Consensus 576 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 653 (945)
+|.. +.+++|++|++++|.+..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++| .+..+|.+ +..
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 146 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP 146 (290)
T ss_dssp EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhhccc
Confidence 6654 78889999999999999999888999999999999987 76776 45788999999999988 56666654 578
Q ss_pred CCCCCcCCcccccCCcCCCC-cccccccccCCCCCe
Q 002265 654 LTSLRTLDRFVVGGGVDGSN-TCRLESLKNLQLRGK 688 (945)
Q Consensus 654 L~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~L~~~ 688 (945)
+++|+.|++..+.....+.. ...+.+|+.|+|+++
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 88888888877765554432 234566666666543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.7e-15 Score=166.20 Aligned_cols=209 Identities=15% Similarity=0.128 Sum_probs=120.5
Q ss_pred cccccc--CcccccccccccccccChhhhcCCcccEEEecCCCCccc-cCcccccccCCCeeecCCCCCCccCccCCCCC
Q 002265 578 KNVRKL--IHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRE-LPAGIGKLMNMRSLLNGETYSLKYMPIGISKL 654 (945)
Q Consensus 578 ~~i~~L--~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 654 (945)
..++.+ .+|++|++++|.+...+..+.++++|++|++++|..... +|..+..+++|++|++++|......|..++.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 344555 667777777777766555566677777777777662222 66666677777777777764333445555556
Q ss_pred CCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEec-cccCCCCCccc
Q 002265 655 TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFG-RVVDGEGEEGR 733 (945)
Q Consensus 655 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~ 733 (945)
++|++|++..+.... .......+.++++|+.|++++| .+.
T Consensus 142 ~~L~~L~L~~~~~l~-------------------------------~~~l~~~~~~~~~L~~L~l~~~~~l~-------- 182 (336)
T 2ast_B 142 SNLVRLNLSGCSGFS-------------------------------EFALQTLLSSCSRLDELNLSWCFDFT-------- 182 (336)
T ss_dssp TTCSEEECTTCBSCC-------------------------------HHHHHHHHHHCTTCCEEECCCCTTCC--------
T ss_pred CCCCEEECCCCCCCC-------------------------------HHHHHHHHhcCCCCCEEcCCCCCCcC--------
Confidence 666655544331000 0011223445566666666666 421
Q ss_pred cCchhHHHHHhcCCCCC-CccEEEEEeeC--C--CCCCcccccccCCcEEEEecCCCCC--cCCCCCccc-cceEeeccc
Q 002265 734 RKNEKDKQLLEALQPPL-NLEEFGIVFYG--G--NIFPKWLTSLTNLRELRLVSCVDCE--HLPPLGKLA-LEKLELGNL 805 (945)
Q Consensus 734 ~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~-L~~L~l~~~ 805 (945)
...+...+..++ +|+.|++++|. . ..+|..+..+++|+.|++++|..+. .++.++.++ |+.|++++|
T Consensus 183 -----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 183 -----EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp -----HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred -----hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 122333344455 77777777763 2 2345566678888888888887433 344566677 888888777
Q ss_pred cCceEeCccccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCc
Q 002265 806 KSVKRLGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGL 849 (945)
Q Consensus 806 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 849 (945)
..+.. ..+ ..+..+++|++|++++|
T Consensus 258 ~~~~~--~~~-----------------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 258 YDIIP--ETL-----------------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCG--GGG-----------------GGGGGCTTCCEEECTTS
T ss_pred CCCCH--HHH-----------------HHHhcCCCCCEEeccCc
Confidence 52211 110 11346788888888876
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=5.5e-16 Score=173.58 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=155.8
Q ss_pred CCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCC---CcccccCccccccC
Q 002265 508 GDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDP---NSIREIPKNVRKLI 584 (945)
Q Consensus 508 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~---~~l~~lp~~i~~L~ 584 (945)
...++..+..+++|++|+++++.... .....+...+..+++|++|++++|.+.. +.+ ..+..+...+..++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~~~~~~----l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDIFTGR----VKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCSCCTTS----CGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCcccccCc----cccchhHHHHHHHHHHhhCC
Confidence 34556677788899999998875210 0011234447788999999965543211 000 01122223347889
Q ss_pred cccccccccccccc-----cChhhhcCCcccEEEecCCCCcc----ccCcccccc---------cCCCeeecCCCCCC-c
Q 002265 585 HLKYLNLSELGIEI-----LPETLCELYNLQKLDIRRCRNLR----ELPAGIGKL---------MNMRSLLNGETYSL-K 645 (945)
Q Consensus 585 ~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lP~~i~~L---------~~L~~L~l~~~~~l-~ 645 (945)
+|++|+|++|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... .
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 99999999998875 78888999999999999987321 233344445 89999999988433 2
Q ss_pred cCc---cCCCCCCCCCcCCcccccCCc------CCCCcccccccccCCCCCeEEEcCCCCCCChh----hhhhcccccCC
Q 002265 646 YMP---IGISKLTSLRTLDRFVVGGGV------DGSNTCRLESLKNLQLRGKCSIEGLSNVSHLD----EAERSQLYNKK 712 (945)
Q Consensus 646 ~lp---~~i~~L~~L~~L~~~~~~~~~------~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~----~~~~~~l~~~~ 712 (945)
.+| ..+..+++|++|++..+.... .+.....+++|+.|+|+++ .+. ..++..+..++
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n----------~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN----------TFTHLGSSALAIALKSWP 244 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS----------CCHHHHHHHHHHHGGGCT
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC----------CCCcHHHHHHHHHHccCC
Confidence 334 356677788888877765441 1113345566666666644 121 23344566677
Q ss_pred CCCeEEEEeccccCCCCCccccCchhHHHHHhcC--CCCCCccEEEEEeeCCCC-----CCccc-ccccCCcEEEEecCC
Q 002265 713 NLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL--QPPLNLEEFGIVFYGGNI-----FPKWL-TSLTNLRELRLVSCV 784 (945)
Q Consensus 713 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----lp~~~-~~l~~L~~L~L~~~~ 784 (945)
+|+.|++++|.+.. .....++..+ ..+++|+.|++++|.... +|.++ .++++|+.|++++|.
T Consensus 245 ~L~~L~L~~n~i~~----------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 245 NLRELGLNDCLLSA----------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TCCEEECTTCCCCH----------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CcCEEECCCCCCch----------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 77777777766321 1112234444 336777777777776654 56666 456777777777775
Q ss_pred CCC
Q 002265 785 DCE 787 (945)
Q Consensus 785 ~~~ 787 (945)
...
T Consensus 315 l~~ 317 (386)
T 2ca6_A 315 FSE 317 (386)
T ss_dssp SCT
T ss_pred CCc
Confidence 443
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=2.2e-16 Score=187.91 Aligned_cols=343 Identities=16% Similarity=0.130 Sum_probs=202.6
Q ss_pred cCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc--cCccccccCccccccccc
Q 002265 516 CGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE--IPKNVRKLIHLKYLNLSE 593 (945)
Q Consensus 516 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~--lp~~i~~L~~L~~L~L~~ 593 (945)
..+++|++|+++++.. ....+..+...+++|++|++++|. .+.. ++..+..+++|++|+|++
T Consensus 102 ~~~~~L~~L~L~~~~~-----~~~~~~~l~~~~~~L~~L~L~~~~-----------~~~~~~l~~~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCE-----------GFSTDGLAAIAATCRNLKELDLRE 165 (594)
T ss_dssp HHCTTCCEEEEESCBC-----CHHHHHHHHHHCTTCCEEEEESCE-----------EEEHHHHHHHHHHCTTCCEEECTT
T ss_pred HhCCCCCeEEeeCcEE-----cHHHHHHHHHhCCCCcEEeCCCcC-----------CCCHHHHHHHHHhCCCCCEEeCcC
Confidence 3678999999998752 112233333468999999955442 2222 444456789999999999
Q ss_pred ccccc-----cChhhhcCCcccEEEecCCC-Cc--cccCcccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccc
Q 002265 594 LGIEI-----LPETLCELYNLQKLDIRRCR-NL--RELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVV 665 (945)
Q Consensus 594 ~~i~~-----lp~~i~~L~~L~~L~L~~~~-~l--~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~ 665 (945)
|.+.. ++.....+++|++|++++|. .+ ..++.-+.++++|++|++++|..+..+|..+..+++|+.|++..+
T Consensus 166 ~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 98663 33444477899999999986 11 223333456799999999999777777878888899999875443
Q ss_pred cCCc-------CCCCcccccccccC-CCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCch
Q 002265 666 GGGV-------DGSNTCRLESLKNL-QLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNE 737 (945)
Q Consensus 666 ~~~~-------~~~~~~~l~~L~~L-~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 737 (945)
.... .+.....+++|+.| .+. .. ....+...+..+++|+.|++++|.+.
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~---------~~--~~~~l~~~~~~~~~L~~L~L~~~~l~------------ 302 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFW---------DA--VPAYLPAVYSVCSRLTTLNLSYATVQ------------ 302 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCB---------TC--CGGGGGGGHHHHTTCCEEECTTCCCC------------
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCc---------cc--chhhHHHHHHhhCCCCEEEccCCCCC------------
Confidence 2110 00112233444433 111 11 11223334456889999999988631
Q ss_pred hHHHHHhcCCCCCCccEEEEEeeCCC-CCCcccccccCCcEEEEecCC--------CCCc--CCCCC-ccc-cceEeecc
Q 002265 738 KDKQLLEALQPPLNLEEFGIVFYGGN-IFPKWLTSLTNLRELRLVSCV--------DCEH--LPPLG-KLA-LEKLELGN 804 (945)
Q Consensus 738 ~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~--------~~~~--l~~l~-~l~-L~~L~l~~ 804 (945)
...+...+..+++|+.|.+.++... .++.....+++|+.|++++|. .+.. +..+. .+| |+.|.+.
T Consensus 303 -~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~- 380 (594)
T 2p1m_B 303 -SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF- 380 (594)
T ss_dssp -HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-
T ss_pred -HHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-
Confidence 2334444567899999999988321 123333468999999996642 2211 11111 256 7777443
Q ss_pred ccCceEeCccccCCCCCCCCCCCCCCCCCcC-cCCCccceeecc-----CccccccccccccccccccCCCcccccCCC-
Q 002265 805 LKSVKRLGNEFLGIEESSEDDPSSSSSSSSV-TAFPKLKSLEIK-----GLDELEEWNYRITRKENVSIMPQLPILEDH- 877 (945)
Q Consensus 805 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~-----~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~- 877 (945)
|..+...+.. .+ ..+|+|++|+++ +|.+++..+....-......+|.|...+..
T Consensus 381 ~~~l~~~~~~-------------------~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 381 CRQMTNAALI-------------------TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp ESCCCHHHHH-------------------HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred cCCcCHHHHH-------------------HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 3323211100 01 258999999999 566666433210000001223333332221
Q ss_pred CCC---------CCCccceEeeccCcCCCC-CCcCC-CCCCCccEEEEeCCcc
Q 002265 878 RTT---------DIPRLSSLRIWYCPKLKV-LPDYL-LRTTTLQKLTIWGCPL 919 (945)
Q Consensus 878 ~l~---------~l~~L~~L~l~~c~~L~~-lp~~~-~~l~~L~~L~l~~c~~ 919 (945)
.+. .+++|+.|+|++|. +.. -+..+ ..+++|+.|++++|+.
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 111 16789999999995 432 11122 4579999999999986
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=8.5e-14 Score=153.25 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=79.3
Q ss_pred cCCCcccccCccccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~ 645 (945)
-+++++.++|..+ ..+|++|+|++|.|+.+|+ .+.+|++|++|+|++|..+..+|. .+.++++|.++...+++.+.
T Consensus 16 C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 16 CQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred ecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 5566788888877 4689999999999999986 579999999999999986677775 46788888876555555777
Q ss_pred cCc-cCCCCCCCCCcCCcccccCCcC
Q 002265 646 YMP-IGISKLTSLRTLDRFVVGGGVD 670 (945)
Q Consensus 646 ~lp-~~i~~L~~L~~L~~~~~~~~~~ 670 (945)
.+| ..+..+++|++|++..+.....
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred ccCchhhhhccccccccccccccccC
Confidence 775 4578999999999887765543
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=4e-14 Score=149.87 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=26.5
Q ss_pred ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCC
Q 002265 580 VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGET 641 (945)
Q Consensus 580 i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~ 641 (945)
++.+++|++|++++|.++.+|.. ++++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC
Confidence 44444444444444444433332 3444444444444444 3333322 344444444444444
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=1.9e-14 Score=157.73 Aligned_cols=207 Identities=17% Similarity=0.115 Sum_probs=136.6
Q ss_pred HhccC--CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccc--cChhhhcCCcccEEEecCCCC
Q 002265 544 LFSKL--VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEI--LPETLCELYNLQKLDIRRCRN 619 (945)
Q Consensus 544 ~~~~l--~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~ 619 (945)
.+..+ +.++.|+ +.++.+...+..+..+.+|++|++++|.+.. +|..+..+++|++|++++|..
T Consensus 63 ~~~~~~~~~l~~L~------------l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l 130 (336)
T 2ast_B 63 VTGRLLSQGVIAFR------------CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130 (336)
T ss_dssp HHHHHHHTTCSEEE------------CTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC
T ss_pred HHHhhhhccceEEE------------cCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc
Confidence 34444 6788888 5666666666667788889999998888762 788888889999999988874
Q ss_pred ccccCcccccccCCCeeecCCCCCCc--cCccCCCCCCCCCcCCcccc-cCCcCCCCcccccccccCCCCCeEEEcCCCC
Q 002265 620 LRELPAGIGKLMNMRSLLNGETYSLK--YMPIGISKLTSLRTLDRFVV-GGGVDGSNTCRLESLKNLQLRGKCSIEGLSN 696 (945)
Q Consensus 620 l~~lP~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~~~~~-~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~ 696 (945)
....|..+..+++|++|++++|..+. .+|..+..+++|++|++..+ ....
T Consensus 131 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--------------------------- 183 (336)
T 2ast_B 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--------------------------- 183 (336)
T ss_dssp CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH---------------------------
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh---------------------------
Confidence 44677778888899999998885444 24555566666666665444 2111
Q ss_pred CCChhhhhhcccccCC-CCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCC--CCCCccccccc
Q 002265 697 VSHLDEAERSQLYNKK-NLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGG--NIFPKWLTSLT 773 (945)
Q Consensus 697 ~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~lp~~~~~l~ 773 (945)
......+..++ +|+.|++++|.+. .....++..+..+++|+.|++++|.. ...+..+..++
T Consensus 184 -----~~~~~~~~~l~~~L~~L~l~~~~~~-----------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 184 -----KHVQVAVAHVSETITQLNLSGYRKN-----------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp -----HHHHHHHHHSCTTCCEEECCSCGGG-----------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred -----HHHHHHHHhcccCCCEEEeCCCccc-----------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 01222344556 7777777666310 01133344445567788888877763 23466777888
Q ss_pred CCcEEEEecCCCCC--cCCCCCccc-cceEeeccc
Q 002265 774 NLRELRLVSCVDCE--HLPPLGKLA-LEKLELGNL 805 (945)
Q Consensus 774 ~L~~L~L~~~~~~~--~l~~l~~l~-L~~L~l~~~ 805 (945)
+|+.|++++|.... .+..++.+| |+.|++++|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 88888888886332 223466777 888888876
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=6.2e-14 Score=151.61 Aligned_cols=231 Identities=16% Similarity=0.074 Sum_probs=145.9
Q ss_pred CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc-ccCccc--cccCccccccccc
Q 002265 517 GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR-EIPKNV--RKLIHLKYLNLSE 593 (945)
Q Consensus 517 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~-~lp~~i--~~L~~L~~L~L~~ 593 (945)
....++.|.+.+..... ..... +.. +..++.|+.|+++ +|.+. ..|..+ +.+.+|++|+|++
T Consensus 62 ~~~~l~~l~l~~~~~~~-~~~~~-~~~-~~~~~~L~~L~l~------------~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 126 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPA-QLLVG-ALR-VLAYSRLKELTLE------------DLKITGTMPPLPLEATGLALSSLRLRN 126 (310)
T ss_dssp SSCCCCEEEECSCCCBH-HHHHH-HHH-HHHHSCCCEEEEE------------SCCCBSCCCCCSSSCCCBCCSSCEEES
T ss_pred hhcceeEEEEeCCcCCH-HHHHH-HHH-hcccCceeEEEee------------CCEeccchhhhhhhccCCCCCEEEeec
Confidence 34457778877655211 00111 111 2234679999944 44443 456666 8899999999999
Q ss_pred ccccc-cC----hhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCcc--Cc--cCCCCCCCCCcCCccc
Q 002265 594 LGIEI-LP----ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKY--MP--IGISKLTSLRTLDRFV 664 (945)
Q Consensus 594 ~~i~~-lp----~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~--lp--~~i~~L~~L~~L~~~~ 664 (945)
|.+.. .| ..+..+++|++|++++|......|..++.+++|++|++++|..... +| ..++.+++|++|++..
T Consensus 127 n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 127 VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 99884 22 3456799999999999984344446788999999999999853321 22 2235666777766654
Q ss_pred ccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHh
Q 002265 665 VGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLE 744 (945)
Q Consensus 665 ~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 744 (945)
+.... +.......+..+++|+.|++++|.+.+.... ...
T Consensus 207 N~l~~------------------------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-----------~~~ 245 (310)
T 4glp_A 207 TGMET------------------------------PTGVCAALAAAGVQPHSLDLSHNSLRATVNP-----------SAP 245 (310)
T ss_dssp SCCCC------------------------------HHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-----------CCS
T ss_pred CCCCc------------------------------hHHHHHHHHhcCCCCCEEECCCCCCCccchh-----------hHH
Confidence 43221 1111111234566777777777765432100 001
Q ss_pred cCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeecccc
Q 002265 745 ALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 745 ~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~~~ 806 (945)
.+..+++|+.|++++|....+|.++. ++|+.|+|++|.. ..+|.+..+| |+.|++++++
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL-NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC-CSCCCTTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC-CCCchhhhCCCccEEECcCCC
Confidence 12234688888888888888888764 7899999988854 4556677788 8888887754
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=3.8e-13 Score=142.29 Aligned_cols=179 Identities=22% Similarity=0.262 Sum_probs=121.1
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
...+++|+.|+ +.++.+..++ .++.+++|++|++++|.+..++ .++++++|++|++++|. +..+|
T Consensus 37 ~~~l~~L~~L~------------l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQII------------ANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLP 101 (272)
T ss_dssp HHHHTTCCEEE------------CTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCC
T ss_pred cccccceeeee------------eCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccC
Confidence 34567788888 6666666654 4778888888888888888764 68888888888888887 66666
Q ss_pred cc-cccccCCCeeecCCCCCCccCccC-CCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhh
Q 002265 625 AG-IGKLMNMRSLLNGETYSLKYMPIG-ISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDE 702 (945)
Q Consensus 625 ~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~ 702 (945)
.. +.++++|++|++++| .+..+|.. ++.+++|++|++..+.....+.
T Consensus 102 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------ 150 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------------------------ 150 (272)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------------
T ss_pred hhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCH------------------------------
Confidence 54 578888888888888 44555543 6777777777766554332211
Q ss_pred hhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEe
Q 002265 703 AERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLV 781 (945)
Q Consensus 703 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~ 781 (945)
..+..+++|+.|+++.|.+.... ...+..+++|+.|++++|....+|. .+..+++|+.|+++
T Consensus 151 ---~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 151 ---GVFDKLTNLTELDLSYNQLQSLP--------------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ---HHhccCccCCEEECCCCCcCccC--------------HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 12344556667777666543221 1224556777888887777766554 46788899999998
Q ss_pred cCCCC
Q 002265 782 SCVDC 786 (945)
Q Consensus 782 ~~~~~ 786 (945)
+|...
T Consensus 214 ~N~~~ 218 (272)
T 3rfs_A 214 DNPWD 218 (272)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 88543
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=4.2e-13 Score=140.18 Aligned_cols=147 Identities=24% Similarity=0.301 Sum_probs=107.3
Q ss_pred EEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc
Q 002265 499 RHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK 578 (945)
Q Consensus 499 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~ 578 (945)
+++.+..+++..+|..+. ++++.|++.++. +..+.+..|.++++|++|+ +++|.+..++.
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~------------L~~n~l~~~~~ 76 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG------LATLSDATFRGLTKLTWLN------------LDYNQLQTLSA 76 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSC------CCCCCTTTTTTCTTCCEEE------------CTTSCCCCCCT
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCC------cCccCHhHhcCcccCCEEE------------CCCCcCCccCH
Confidence 456667777777776554 678888888876 2234455678888888888 55555665544
Q ss_pred -cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCCCCccCcc-CCCCC
Q 002265 579 -NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETYSLKYMPI-GISKL 654 (945)
Q Consensus 579 -~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~L 654 (945)
.+..+.+|++|+|++|.++.+|. .+..+++|++|+|++|. +..+|.. +..+++|++|++++| .+..+|. .++.+
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 154 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKL 154 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcC
Confidence 46788888888888888887764 46788888888888886 7677765 477888888888888 5666665 47778
Q ss_pred CCCCcCCcccccC
Q 002265 655 TSLRTLDRFVVGG 667 (945)
Q Consensus 655 ~~L~~L~~~~~~~ 667 (945)
++|++|++..+..
T Consensus 155 ~~L~~L~L~~N~l 167 (251)
T 3m19_A 155 TNLQTLSLSTNQL 167 (251)
T ss_dssp TTCCEEECCSSCC
T ss_pred cCCCEEECCCCcC
Confidence 8888877766543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=3.2e-13 Score=148.61 Aligned_cols=235 Identities=17% Similarity=0.094 Sum_probs=144.9
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc-cccCc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI-REIPK 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l-~~lp~ 578 (945)
.+..+.+++..+|..+ .++++.|+++++. +..+.++.|.++++|++|+ +++|.+ +.+|.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~------i~~i~~~~f~~l~~L~~L~------------Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTK------LRVIQKGAFSGFGDLEKIE------------ISQNDVLEVIEA 72 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCC------CSEECTTSSTTCTTCCEEE------------EECCTTCCEECT
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCc------CCCcCHHHHcCCCCCCEEE------------CcCCCCCCccCh
Confidence 3455666667777655 3578888888776 3344555678888888888 444443 33543
Q ss_pred -cccccCcccc-cccccccccccC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCccC-CCC
Q 002265 579 -NVRKLIHLKY-LNLSELGIEILP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMPIG-ISK 653 (945)
Q Consensus 579 -~i~~L~~L~~-L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 653 (945)
.+.++.+|+. +.+++|.+..+| ..+..+++|++|++++|. +..+|. .+....++..|++.++..+..+|.. +..
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 3566766654 555567777664 456778888888888776 666654 3345566777777666566666543 333
Q ss_pred C-CCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCcc
Q 002265 654 L-TSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEG 732 (945)
Q Consensus 654 L-~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 732 (945)
+ ..|+.|++..+.....+.......+|+.|.+.++ |.+...+
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~---------------------------------n~l~~i~---- 194 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN---------------------------------NNLEELP---- 194 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC---------------------------------TTCCCCC----
T ss_pred cchhhhhhccccccccCCChhhccccchhHHhhccC---------------------------------CcccCCC----
Confidence 3 3455565555544433333333333443333221 1111100
Q ss_pred ccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCCcCCCCCccc-cceEeecc
Q 002265 733 RRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCEHLPPLGKLA-LEKLELGN 804 (945)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~-L~~L~l~~ 804 (945)
.+.+..+++|+.|++++|....+|.. .+.+|+.|.+.++..++.+|.+..++ |+.+++.+
T Consensus 195 ----------~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 195 ----------NDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ----------TTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ----------HHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 01244556777777777777778864 47888999988888899999988888 99988864
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=7.2e-15 Score=164.43 Aligned_cols=244 Identities=16% Similarity=0.082 Sum_probs=167.8
Q ss_pred hHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccc----ccChhh-------hcCCcc
Q 002265 541 LSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE----ILPETL-------CELYNL 609 (945)
Q Consensus 541 ~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~----~lp~~i-------~~L~~L 609 (945)
+...+..+++|++|++++|.+ .......++..+..+++|++|+|++|.+. .+|..+ .++++|
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTI-------GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEE-------CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHhcCCCccEEECCCCCC-------CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 445578899999999554442 11112235556778999999999997654 445554 789999
Q ss_pred cEEEecCCCCcc----ccCcccccccCCCeeecCCCCCCc----cCccCCCCC---------CCCCcCCcccccCCcC--
Q 002265 610 QKLDIRRCRNLR----ELPAGIGKLMNMRSLLNGETYSLK----YMPIGISKL---------TSLRTLDRFVVGGGVD-- 670 (945)
Q Consensus 610 ~~L~L~~~~~l~----~lP~~i~~L~~L~~L~l~~~~~l~----~lp~~i~~L---------~~L~~L~~~~~~~~~~-- 670 (945)
++|+|++|.... .+|..+.++++|++|++++|.... .++..+..+ ++|++|++..+.....
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999998333 378889999999999999995321 233334444 8999999988775421
Q ss_pred C---CCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCC
Q 002265 671 G---SNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQ 747 (945)
Q Consensus 671 ~---~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 747 (945)
+ .....++.|+.|++++| .+. . .......+..+..+++|+.|++++|.+.. .....++..+.
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n-~l~---~-~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----------~g~~~l~~~l~ 241 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQN-GIR---P-EGIEHLLLEGLAYCQELKVLDLQDNTFTH----------LGSSALAIALK 241 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSS-CCC---H-HHHHHHHHTTGGGCTTCCEEECCSSCCHH----------HHHHHHHHHGG
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCC---H-hHHHHHHHHHhhcCCCccEEECcCCCCCc----------HHHHHHHHHHc
Confidence 1 12235667787777765 111 0 01111233377889999999999987421 11245667788
Q ss_pred CCCCccEEEEEeeCCCC-----CCcccc--cccCCcEEEEecCCCCC----cCCC-C-Cccc-cceEeecccc
Q 002265 748 PPLNLEEFGIVFYGGNI-----FPKWLT--SLTNLRELRLVSCVDCE----HLPP-L-GKLA-LEKLELGNLK 806 (945)
Q Consensus 748 ~~~~L~~L~l~~~~~~~-----lp~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~~l~-L~~L~l~~~~ 806 (945)
.+++|+.|++++|.... +|.++. .+++|+.|+|++|.... .+|. + ..+| |+.|+++++.
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 88999999999998654 356664 48999999999997554 2554 3 4478 9999998875
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=1.9e-13 Score=158.42 Aligned_cols=188 Identities=16% Similarity=0.104 Sum_probs=143.2
Q ss_pred CccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccc
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIG 628 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~ 628 (945)
.+|+.|+ ++++.+..+|..+. ++|++|+|++|.|+.+| +.+++|++|++++|. +..+|. +.
T Consensus 59 ~~L~~L~------------Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQ------------LNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LP 119 (571)
T ss_dssp TTCSEEE------------CCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CC
T ss_pred CCccEEE------------eCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hh
Confidence 3899999 77777778888774 78999999999999999 568999999999997 778998 66
Q ss_pred cccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhccc
Q 002265 629 KLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQL 708 (945)
Q Consensus 629 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l 708 (945)
+ +|++|++++| .+..+|. .+++|+.|++..+.....+. .+.+|+.|+|+++ .+..++. +
T Consensus 120 ~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-----------l 178 (571)
T 3cvr_A 120 A--SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-----------L 178 (571)
T ss_dssp T--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC-----------C
T ss_pred c--CCCEEECCCC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch-----------h
Confidence 5 9999999998 5667887 68999999998888666554 5678888888865 2222221 2
Q ss_pred ccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhc-CCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCCC
Q 002265 709 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEA-LQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDCE 787 (945)
Q Consensus 709 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 787 (945)
. ++|+.|++++|.+...+. +... ...++.|+.|++++|.+..+|.++..+++|+.|+|++|...+
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~------------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA------------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC------------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred h--CCCCEEECcCCCCCchhh------------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 2 789999999998653321 0001 122334499999999999999988889999999999997655
Q ss_pred cCC
Q 002265 788 HLP 790 (945)
Q Consensus 788 ~l~ 790 (945)
..|
T Consensus 245 ~~p 247 (571)
T 3cvr_A 245 RIR 247 (571)
T ss_dssp HHH
T ss_pred cCH
Confidence 443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=8.7e-13 Score=140.84 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=89.6
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.++.+.+..+.+..++ .+..+++|++|+++++.. ..+.+ +.++++|++|+ +++|.+..+
T Consensus 47 ~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l------~~~~~--l~~l~~L~~L~------------l~~n~l~~~ 105 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL------TDIKP--LANLKNLGWLF------------LDENKVKDL 105 (291)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC------CCCGG--GTTCTTCCEEE------------CCSSCCCCG
T ss_pred cccEEEccCCCcccCh-hHhcCCCCCEEEccCCcc------CCCcc--cccCCCCCEEE------------CCCCcCCCC
Confidence 4666666666665554 356677777777776652 12222 66777777777 445555555
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
|. ++.+.+|++|++++|.+..++ .++.+++|++|++++|. +..+ ..+..+++|++|++++| .+..++. +..+++
T Consensus 106 ~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 106 SS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTK 179 (291)
T ss_dssp GG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTT
T ss_pred hh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCc
Confidence 43 667777777777777777653 56777777777777776 5555 34677777777777776 4444543 666666
Q ss_pred CCcCCcccc
Q 002265 657 LRTLDRFVV 665 (945)
Q Consensus 657 L~~L~~~~~ 665 (945)
|+.|++..+
T Consensus 180 L~~L~L~~N 188 (291)
T 1h6t_A 180 LQNLYLSKN 188 (291)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 666655443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=145.49 Aligned_cols=189 Identities=18% Similarity=0.091 Sum_probs=126.1
Q ss_pred hhhHHHh--ccCCccceEeeccccccccccccCCCcccccC-ccccccCcccccccccccccccC-hhhhcCCcccEEEe
Q 002265 539 SILSELF--SKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-KNVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDI 614 (945)
Q Consensus 539 ~~~~~~~--~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L 614 (945)
...+..+ ..+++|++|++++|.+... ...++ ..+..+++|++|+|++|.+..+| ..++++++|++|+|
T Consensus 105 ~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 176 (310)
T 4glp_A 105 GTMPPLPLEATGLALSSLRLRNVSWATG--------RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDL 176 (310)
T ss_dssp SCCCCCSSSCCCBCCSSCEEESCCCSST--------TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEEC
T ss_pred cchhhhhhhccCCCCCEEEeecccccch--------hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEEC
Confidence 3444445 8899999999666653210 00111 23457899999999999998665 67899999999999
Q ss_pred cCCCCccc--cCc--ccccccCCCeeecCCCCCCccCccC----CCCCCCCCcCCcccccCCcC-CCCcccccccccCCC
Q 002265 615 RRCRNLRE--LPA--GIGKLMNMRSLLNGETYSLKYMPIG----ISKLTSLRTLDRFVVGGGVD-GSNTCRLESLKNLQL 685 (945)
Q Consensus 615 ~~~~~l~~--lP~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~~~~~~~~~~-~~~~~~l~~L~~L~L 685 (945)
++|..... +|. .+..+++|++|++++| .+..+|.. ++.+++|++|++..+..... +.....
T Consensus 177 s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------- 246 (310)
T 4glp_A 177 SDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR--------- 246 (310)
T ss_dssp CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS---------
T ss_pred CCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh---------
Confidence 99973321 332 3468999999999999 55555542 46778888888777664432 111111
Q ss_pred CCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCC
Q 002265 686 RGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIF 765 (945)
Q Consensus 686 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l 765 (945)
+..+++|+.|++++|.+... +..+ +++|+.|++++|....+
T Consensus 247 ----------------------~~~~~~L~~L~Ls~N~l~~l---------------p~~~--~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 247 ----------------------CMWSSALNSLNLSFAGLEQV---------------PKGL--PAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp ----------------------CCCCTTCCCEECCSSCCCSC---------------CSCC--CSCCSCEECCSCCCCSC
T ss_pred ----------------------ccCcCcCCEEECCCCCCCch---------------hhhh--cCCCCEEECCCCcCCCC
Confidence 11124666666666664321 1112 26788888888887776
Q ss_pred CcccccccCCcEEEEecCCC
Q 002265 766 PKWLTSLTNLRELRLVSCVD 785 (945)
Q Consensus 766 p~~~~~l~~L~~L~L~~~~~ 785 (945)
|. +..+++|+.|++++|+.
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTT
T ss_pred ch-hhhCCCccEEECcCCCC
Confidence 65 57789999999998864
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=8.2e-13 Score=141.05 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=117.5
Q ss_pred ccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc
Q 002265 546 SKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA 625 (945)
Q Consensus 546 ~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~ 625 (945)
..+++|+.|+ ++++.+..+| .++.+++|++|++++|.+..+|. ++++++|++|++++|. +..+|.
T Consensus 43 ~~l~~L~~L~------------l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~ 107 (291)
T 1h6t_A 43 NELNSIDQII------------ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS 107 (291)
T ss_dssp HHHHTCCEEE------------CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG
T ss_pred hhcCcccEEE------------ccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh
Confidence 4566788888 6666666665 37788888888888888887776 8888888888888887 666665
Q ss_pred ccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhh
Q 002265 626 GIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAER 705 (945)
Q Consensus 626 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~ 705 (945)
+..+++|++|++++| .+..++ .++.+++|+.|++..+.....
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~~~----------------------------------- 149 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI----------------------------------- 149 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCCCCC-----------------------------------
T ss_pred -hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcCCcc-----------------------------------
Confidence 788888888888887 455443 466666666666554432221
Q ss_pred cccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCC
Q 002265 706 SQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCV 784 (945)
Q Consensus 706 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 784 (945)
..+..+++|+.|+++.|.+.+. . .+..+++|+.|++++|....+|. +..+++|+.|++++|.
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~---------------~-~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDI---------------V-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC---------------G-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred hhhccCCCCCEEEccCCccccc---------------h-hhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 1244556677777776664321 0 15566778888888877777664 7788888888888875
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=9.3e-13 Score=131.88 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=116.9
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE 575 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~ 575 (945)
..++.+.+..+.+..++ .+..+++|++|+++++... . ++ .+..+++|++|+ +++|.+..
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~------~-~~-~l~~l~~L~~L~------------l~~n~l~~ 102 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT------N-YN-PISGLSNLERLR------------IMGKDVTS 102 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS------C-CG-GGTTCTTCCEEE------------EECTTCBG
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC------c-ch-hhhcCCCCCEEE------------eECCccCc
Confidence 45788889888888777 6888999999999988521 1 22 478899999999 44445443
Q ss_pred -cCccccccCccccccccccccc-ccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCC
Q 002265 576 -IPKNVRKLIHLKYLNLSELGIE-ILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISK 653 (945)
Q Consensus 576 -lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 653 (945)
.|..++.+++|++|++++|.+. ..|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..+| .+..
T Consensus 103 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~ 179 (197)
T 4ezg_A 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIED 179 (197)
T ss_dssp GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGG
T ss_pred ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-Hhcc
Confidence 5677888999999999999988 478889999999999999987677787 5889999999999988 566666 6788
Q ss_pred CCCCCcCCcccccC
Q 002265 654 LTSLRTLDRFVVGG 667 (945)
Q Consensus 654 L~~L~~L~~~~~~~ 667 (945)
+++|+.|++.++..
T Consensus 180 l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 180 FPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEEECBC--
T ss_pred CCCCCEEEeeCccc
Confidence 88888888776653
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=2.1e-12 Score=134.86 Aligned_cols=153 Identities=24% Similarity=0.328 Sum_probs=127.2
Q ss_pred CCcEEEEEeecCCCCCCC-ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFP-MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++.+.+..+.+..++ ..+.++++|++|+++++. +..+.+..|..+++|++|+ +++|.+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~------------L~~n~l 95 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLG------------LANNQL 95 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEE------------CTTSCC
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEE------------CCCCcc
Confidence 457899999999887664 468899999999999987 3344566689999999999 666677
Q ss_pred cccCc-cccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCcc-
Q 002265 574 REIPK-NVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMPI- 649 (945)
Q Consensus 574 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~- 649 (945)
..+|. .++.+.+|++|+|++|.++.+|.. ++++++|++|+|++|. +..+|. .+..+++|++|++++| .+..+|.
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 173 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG 173 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHH
Confidence 77764 468999999999999999988876 5899999999999997 778877 5889999999999999 5556654
Q ss_pred CCCCCCCCCcCCcccccC
Q 002265 650 GISKLTSLRTLDRFVVGG 667 (945)
Q Consensus 650 ~i~~L~~L~~L~~~~~~~ 667 (945)
.+..+++|+.|++..+..
T Consensus 174 ~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSCCB
T ss_pred HHhCCCCCCEEEeeCCce
Confidence 688899999998877653
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=1.1e-12 Score=153.75 Aligned_cols=182 Identities=21% Similarity=0.199 Sum_probs=115.5
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccC
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYM 647 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 647 (945)
+..+.+..++ .+..|.+|++|++++|.+..+| .++.|++|+.|+|++|. +..+|. +..+++|++|+|++| .+..+
T Consensus 28 l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l 102 (605)
T 1m9s_A 28 LKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDL 102 (605)
T ss_dssp TTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred ccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCC
Confidence 4444444432 2456777888888888777776 47778888888888776 666666 777888888888777 45555
Q ss_pred ccCCCCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCC
Q 002265 648 PIGISKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDG 727 (945)
Q Consensus 648 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 727 (945)
| .++.+++|+.|++..+..... .....+++|+.|+|+++ .+. .+ ..+..+++|+.|+|+.|.+.+.
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~------~l-----~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KIT------DI-----TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSS-CCC------CC-----GGGGSCTTCSEEECCSSCCCCC
T ss_pred h-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCC-ccC------Cc-----hhhcccCCCCEEECcCCcCCCc
Confidence 4 677777777777766654432 22334555555555543 111 11 2355667777777777764321
Q ss_pred CCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCC
Q 002265 728 EGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVD 785 (945)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 785 (945)
. .+..+++|+.|+|++|....+| .+..+++|+.|+|++|..
T Consensus 169 ---------------~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 169 ---------------V-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ---------------G-GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred ---------------h-hhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 1 1555677777777777766654 466777777777777653
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=2.6e-12 Score=131.87 Aligned_cols=145 Identities=25% Similarity=0.371 Sum_probs=118.9
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCcc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN 579 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~ 579 (945)
.+.+..+....+|..+. ++|++|+++++. +..+.+..|..+++|++|+ +++|.+..+|..
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~------------L~~N~l~~i~~~ 82 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQ------ITKLEPGVFDSLINLKELY------------LGSNQLGALPVG 82 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEE------------CCSSCCCCCCTT
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCc------cCccCHHHhhCccCCcEEE------------CCCCCCCCcChh
Confidence 45666666777776553 899999999987 3344566788999999999 777777888754
Q ss_pred -ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCcc-CCCCCCC
Q 002265 580 -VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPI-GISKLTS 656 (945)
Q Consensus 580 -i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~ 656 (945)
+..+.+|++|+|++|.|+.+|.. +..+++|++|+|++|. +..+|..+..+++|++|++++| .+..+|. .+..+++
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSS 160 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCC
Confidence 68899999999999999988765 6899999999999988 8899999999999999999998 6667764 4788889
Q ss_pred CCcCCccccc
Q 002265 657 LRTLDRFVVG 666 (945)
Q Consensus 657 L~~L~~~~~~ 666 (945)
|+.|++..+.
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 9988877664
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=3.4e-13 Score=149.17 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=54.1
Q ss_pred CCceeEEEeccCCCCCCCchhhhhH----HHhccCC-ccceEeeccccccccccccCCCccccc-Ccccccc-----Ccc
Q 002265 518 LDRLRSLLIYDRSSFNPSLNSSILS----ELFSKLV-CLRALVIRQSSLYFHPFHLDPNSIREI-PKNVRKL-----IHL 586 (945)
Q Consensus 518 ~~~Lr~L~l~~~~~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p~~i~~L-----~~L 586 (945)
.++|++|+++++. +....+ ..+..++ +|++|+ +++|.+... +..+..+ .+|
T Consensus 21 ~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~------------Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 21 PHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLN------------LSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp CTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEE------------CCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEE------------CcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3446666666655 112122 4455666 666776 333333332 2233333 666
Q ss_pred cccccccccccccC-hh----hhcC-CcccEEEecCCCCccccCc-cc----cc-ccCCCeeecCCC
Q 002265 587 KYLNLSELGIEILP-ET----LCEL-YNLQKLDIRRCRNLRELPA-GI----GK-LMNMRSLLNGET 641 (945)
Q Consensus 587 ~~L~L~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~l~~lP~-~i----~~-L~~L~~L~l~~~ 641 (945)
++|+|++|.+...+ .. +..+ ++|++|++++|. +...+. .+ .. .++|++|++++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 67777766666333 22 3333 666777776666 444332 22 22 246666666666
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3.1e-12 Score=153.92 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=100.6
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE 575 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~ 575 (945)
..++++.+..++....+..+....+|+.+.+........ ....+++.+..++.|++|+ |++|.+..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n--~~~~~~~~~~~l~~L~~L~------------Ls~n~l~~ 238 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN--RMVMPKDSKYDDQLWHALD------------LSNLQIFN 238 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEE------------CTTSCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc--ceecChhhhccCCCCcEEE------------CCCCCCCC
Confidence 457788887777766665555555566655544321111 1124677789999999999 77778889
Q ss_pred cCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCC
Q 002265 576 IPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLT 655 (945)
Q Consensus 576 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 655 (945)
+|..+..+.+|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..+++|++|++|+|++| .+..+|.+++.|+
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC 316 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCT
T ss_pred CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCC
Confidence 9999999999999999999999999999999999999999998 7799999999999999999999 6789999999999
Q ss_pred CCCcCCcccccCC
Q 002265 656 SLRTLDRFVVGGG 668 (945)
Q Consensus 656 ~L~~L~~~~~~~~ 668 (945)
+|++|++..+...
T Consensus 317 ~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 317 NLQFLGVEGNPLE 329 (727)
T ss_dssp TCCCEECTTSCCC
T ss_pred CccEEeCCCCccC
Confidence 9999999887754
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=4e-12 Score=129.56 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=111.3
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc-Cc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-PK 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p~ 578 (945)
.+.+..+++..+|..+. ++++.|.+.++. +..+.+..|..+++|++|+ +++|.+..+ |.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~------------Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT------IKVIPPGAFSPYKKLRRID------------LSNNQISELAPD 74 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC------CCEECTTSSTTCTTCCEEE------------CCSSCCCEECTT
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEE------------CCCCcCCCcCHH
Confidence 45566666777776553 688999998876 3344555688889999999 666666666 67
Q ss_pred cccccCcccccccccccccccChh-hhcCCcccEEEecCCCCcccc-CcccccccCCCeeecCCCCCCccCcc-CCCCCC
Q 002265 579 NVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLREL-PAGIGKLMNMRSLLNGETYSLKYMPI-GISKLT 655 (945)
Q Consensus 579 ~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~ 655 (945)
.+..+.+|++|+|++|.|+.+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|. .+..++
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCC
Confidence 788999999999999999988876 5789999999999988 5555 567888999999999988 5555654 477788
Q ss_pred CCCcCCccccc
Q 002265 656 SLRTLDRFVVG 666 (945)
Q Consensus 656 ~L~~L~~~~~~ 666 (945)
+|+.|++..+.
T Consensus 153 ~L~~L~L~~N~ 163 (220)
T 2v9t_B 153 AIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 88888776654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=2.9e-12 Score=150.22 Aligned_cols=163 Identities=21% Similarity=0.242 Sum_probs=84.5
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
.++.|.+..+.+..++ .+..+++|+.|+++++.. ..+.+ +..+++|+.|+ |++|.+..+
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l------~~~~~--l~~l~~L~~L~------------Ls~N~l~~l 102 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL------TDIKP--LTNLKNLGWLF------------LDENKIKDL 102 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC------CCCGG--GGGCTTCCEEE------------CCSSCCCCC
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC------CCChh--hccCCCCCEEE------------CcCCCCCCC
Confidence 3455555555555544 455666777777766652 12222 56666777777 333334444
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
| .++.+.+|++|+|++|.+..+| .+..|++|+.|+|++|. +..+ ..+..+++|++|+|++| .+..++. +..+++
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~ 176 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTK 176 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTT
T ss_pred h-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCC
Confidence 3 3555555666666665555543 35555666666665554 4444 33555556666666555 3333333 555555
Q ss_pred CCcCCcccccCCcCCCCcccccccccCCCCC
Q 002265 657 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRG 687 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~ 687 (945)
|+.|++..+.....+ ....+++|+.|+|++
T Consensus 177 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 177 LQNLYLSKNHISDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp CCEEECCSSCCCBCG-GGTTCTTCSEEECCS
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEccC
Confidence 555555554433321 223344444444443
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=2.4e-13 Score=150.49 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=159.6
Q ss_pred hhhhHHHhccCCccceEeeccccccccccccCCCcccccC-----ccccccC-ccccccccccccccc-ChhhhcC----
Q 002265 538 SSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-----KNVRKLI-HLKYLNLSELGIEIL-PETLCEL---- 606 (945)
Q Consensus 538 ~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~i~~l-p~~i~~L---- 606 (945)
...++.++...++|++|+ +++|.+...+ ..+..++ +|++|+|++|.+... +..+..+
T Consensus 11 ~~~~~~~~~~~~~L~~L~------------Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLD------------LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp CCHHHHHHTSCTTCCEEE------------CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred hHHHHHHHhCCCCceEEE------------ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 355777777778899999 5556666555 5677888 899999999999854 5667665
Q ss_pred -CcccEEEecCCCCccccC-ccc----ccc-cCCCeeecCCCCCCccCcc-C----CCC-CCCCCcCCcccccCCcCCC-
Q 002265 607 -YNLQKLDIRRCRNLRELP-AGI----GKL-MNMRSLLNGETYSLKYMPI-G----ISK-LTSLRTLDRFVVGGGVDGS- 672 (945)
Q Consensus 607 -~~L~~L~L~~~~~l~~lP-~~i----~~L-~~L~~L~l~~~~~l~~lp~-~----i~~-L~~L~~L~~~~~~~~~~~~- 672 (945)
++|++|+|++|. +...+ ..+ ..+ ++|++|++++|. +...+. . +.. .++|++|++..+.......
T Consensus 79 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 79 PANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp CTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 999999999998 55443 433 344 899999999994 444442 2 344 3699999998887553221
Q ss_pred ----Ccccc-cccccCCCCCeEEEcCCCCCCChhhhhhcccccC-CCCCeEEEEeccccCCCCCccccCchhHHHHHhcC
Q 002265 673 ----NTCRL-ESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNK-KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL 746 (945)
Q Consensus 673 ----~~~~l-~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 746 (945)
....+ ..|+.|+|++| .+.. .....+...+..+ ++|+.|++++|.+... ....+...+
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n-~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----------~~~~l~~~l 220 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGN-NLAS-----KNCAELAKFLASIPASVTSLDLSANLLGLK----------SYAELAYIF 220 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTS-CGGG-----SCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------CHHHHHHHH
T ss_pred HHHHHHhcCCccccEeeecCC-CCch-----hhHHHHHHHHHhCCCCCCEEECCCCCCChh----------HHHHHHHHH
Confidence 11123 37888888865 1111 1112223344555 5999999999985431 123345555
Q ss_pred CC-CCCccEEEEEeeCCCCCCc-----ccccccCCcEEEEecCCCCC-------cC-CCCCccc-cceEeecccc
Q 002265 747 QP-PLNLEEFGIVFYGGNIFPK-----WLTSLTNLRELRLVSCVDCE-------HL-PPLGKLA-LEKLELGNLK 806 (945)
Q Consensus 747 ~~-~~~L~~L~l~~~~~~~lp~-----~~~~l~~L~~L~L~~~~~~~-------~l-~~l~~l~-L~~L~l~~~~ 806 (945)
.. +++|+.|++++|.....+. .+..+++|+.|++++|.... .+ ..+..++ |+.|+++++.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 44 4699999999998766432 34578999999999996211 11 1245566 7888887654
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1.5e-12 Score=130.29 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=106.5
Q ss_pred ccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc
Q 002265 546 SKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA 625 (945)
Q Consensus 546 ~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~ 625 (945)
..+++|+.|+ ++++.+..+| .+..+++|++|++++|.+..++ .++.+++|++|++++|......|.
T Consensus 41 ~~l~~L~~L~------------l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYIT------------LANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEE------------EESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEe------------ccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh
Confidence 4567788888 6666677777 6888999999999999877665 788899999999999874445778
Q ss_pred ccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCccccc-CCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhh
Q 002265 626 GIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVG-GGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAE 704 (945)
Q Consensus 626 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~ 704 (945)
.+..+++|++|++++|......|..++.+++|++|++..+. ....+ ....+++|+.|+++++ .+..+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~---------- 174 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDY---------- 174 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCC----------
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcCh----------
Confidence 88899999999999985555567778888888888887775 44432 3445555666655544 11111
Q ss_pred hcccccCCCCCeEEEEecc
Q 002265 705 RSQLYNKKNLLRLHLEFGR 723 (945)
Q Consensus 705 ~~~l~~~~~L~~L~l~~~~ 723 (945)
..+..+++|+.|++++|.
T Consensus 175 -~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 -RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -TTGGGCSSCCEEEECBC-
T ss_pred -HHhccCCCCCEEEeeCcc
Confidence 034455666666666554
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=3.9e-12 Score=128.59 Aligned_cols=145 Identities=29% Similarity=0.403 Sum_probs=97.5
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCcc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN 579 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~ 579 (945)
.+....++...+|..+ .++|++|+++++.. ..+.+..|..+++|++|+ +++|.+..+|..
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~ 70 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSL------KSLPNGVFDELTSLTQLY------------LGGNKLQSLPNG 70 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCC------CCCCTTTTTTCTTCSEEE------------CCSSCCCCCCTT
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCcc------CcCChhhhcccccCcEEE------------CCCCccCccChh
Confidence 3444455555555443 45788888877752 233445567778888888 555556666654
Q ss_pred -ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCCCCccCccC-CCCCC
Q 002265 580 -VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETYSLKYMPIG-ISKLT 655 (945)
Q Consensus 580 -i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~ 655 (945)
+..+.+|++|++++|.+..+|.. ++++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..++
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCC
Confidence 56778888888888888776654 5778888888888876 6666654 577888888888877 45555544 67777
Q ss_pred CCCcCCccccc
Q 002265 656 SLRTLDRFVVG 666 (945)
Q Consensus 656 ~L~~L~~~~~~ 666 (945)
+|+.|++..+.
T Consensus 149 ~L~~L~l~~N~ 159 (208)
T 2o6s_A 149 SLQYIWLHDNP 159 (208)
T ss_dssp TCCEEECCSCC
T ss_pred CccEEEecCCC
Confidence 77777766553
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=9.7e-12 Score=126.68 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=111.2
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhh-HHHhccCCccceEeeccccccccccccCCCcccccCc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSIL-SELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~ 578 (945)
.+.+..+.+..+|..+ .+.++.|.++++.. ..+. +..|..+++|++|+ +++|.+..++.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l------~~~~~~~~~~~l~~L~~L~------------L~~N~i~~i~~ 74 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEF------TVLEATGIFKKLPQLRKIN------------FSNNKITDIEE 74 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCC------CEECCCCCGGGCTTCCEEE------------CCSSCCCEECT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcC------CccCchhhhccCCCCCEEE------------CCCCcCCEECH
Confidence 5677777777777654 34578899888762 2322 24578889999999 66677777765
Q ss_pred -cccccCcccccccccccccccChh-hhcCCcccEEEecCCCCcccc-CcccccccCCCeeecCCCCCCccC-ccCCCCC
Q 002265 579 -NVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLREL-PAGIGKLMNMRSLLNGETYSLKYM-PIGISKL 654 (945)
Q Consensus 579 -~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L 654 (945)
.++.+.+|++|+|++|.++.+|.. ++++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+ |..+..+
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 152 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTL 152 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTC
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCC
Confidence 688899999999999999877654 8889999999999988 5555 6778889999999999884 4444 6778888
Q ss_pred CCCCcCCccccc
Q 002265 655 TSLRTLDRFVVG 666 (945)
Q Consensus 655 ~~L~~L~~~~~~ 666 (945)
++|+.|++..+.
T Consensus 153 ~~L~~L~L~~N~ 164 (220)
T 2v70_A 153 HSLSTLNLLANP 164 (220)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEecCcC
Confidence 888888876654
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=6.6e-14 Score=163.21 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=84.2
Q ss_pred EEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCC-------CchhhhhHHHhccCCccceEe-eccccccccc-ccc
Q 002265 498 VRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNP-------SLNSSILSELFSKLVCLRALV-IRQSSLYFHP-FHL 568 (945)
Q Consensus 498 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-------~~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~~~-l~l 568 (945)
++++.++.+.+..+|..+..+++|+.|++.++..... ......+|..+..+++|+.|+ ++.+.+...+ +.+
T Consensus 351 L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l 430 (567)
T 1dce_A 351 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 430 (567)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhh
Confidence 3445555555556666666777777766544310000 001123455566666666666 3333211100 011
Q ss_pred CCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCc
Q 002265 569 DPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMP 648 (945)
Q Consensus 569 ~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp 648 (945)
.++.+..+|. ..|++|+|++|.++.+|. ++++++|++|+|++|. +..+|..++.+++|++|++++| .+..+|
T Consensus 431 ~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp 502 (567)
T 1dce_A 431 LENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALENVD 502 (567)
T ss_dssp HHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred hcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC-CCCCCc
Confidence 1111222211 134555555555555554 5555555555555554 4455555555555555555554 333444
Q ss_pred cCCCCCCCCCcCCcccccCCcC--CCCcccccccccCCCCC
Q 002265 649 IGISKLTSLRTLDRFVVGGGVD--GSNTCRLESLKNLQLRG 687 (945)
Q Consensus 649 ~~i~~L~~L~~L~~~~~~~~~~--~~~~~~l~~L~~L~L~~ 687 (945)
.++.+++|++|++..+..... +.....+++|+.|+|++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 455555555555555444333 33344445555555544
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=5.6e-12 Score=122.60 Aligned_cols=130 Identities=25% Similarity=0.224 Sum_probs=76.2
Q ss_pred CceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccc
Q 002265 519 DRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEI 598 (945)
Q Consensus 519 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~ 598 (945)
++|+.|++.++.... ..+|..+..+++|++|+ +++|.+..+ ..++.+++|++|++++|.+..
T Consensus 24 ~~L~~L~l~~n~l~~-----~~i~~~~~~l~~L~~L~------------l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 24 AAVRELVLDNCKSND-----GKIEGLTAEFVNLEFLS------------LINVGLISV-SNLPKLPKLKKLELSENRIFG 85 (168)
T ss_dssp TSCSEEECCSCBCBT-----TBCSSCCGGGGGCCEEE------------EESSCCCCC-SSCCCCSSCCEEEEESCCCCS
T ss_pred ccCCEEECCCCCCCh-----hhHHHHHHhCCCCCEEe------------CcCCCCCCh-hhhccCCCCCEEECcCCcCch
Confidence 556666666554110 11333355666666666 333334444 455666667777777776665
Q ss_pred -cChhhhcCCcccEEEecCCCCccccC--cccccccCCCeeecCCCCCCccCcc----CCCCCCCCCcCCcccccCC
Q 002265 599 -LPETLCELYNLQKLDIRRCRNLRELP--AGIGKLMNMRSLLNGETYSLKYMPI----GISKLTSLRTLDRFVVGGG 668 (945)
Q Consensus 599 -lp~~i~~L~~L~~L~L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~~~~ 668 (945)
+|..+.++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+...
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 56666666777777777665 55554 45666667777777666 4445554 5666666666666655543
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.2e-11 Score=143.18 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=124.3
Q ss_pred cEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 497 KVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
+++.+.+..+.+..+|..+ +++|++|++++|.. .. +| ..+++|++|+ +++|.+..+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l------~~-ip---~~l~~L~~L~------------Ls~N~l~~i 115 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL------IS-LP---ELPASLEYLD------------ACDNRLSTL 115 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC------SC-CC---CCCTTCCEEE------------CCSSCCSCC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC------cc-cc---cccCCCCEEE------------ccCCCCCCc
Confidence 4677888888887777655 37899999988862 22 33 4568899999 666666777
Q ss_pred CccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCCC
Q 002265 577 PKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLTS 656 (945)
Q Consensus 577 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 656 (945)
|. ++. +|++|+|++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|++++| .+..+|. ++ ++
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~ 181 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ES 181 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TT
T ss_pred ch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CC
Confidence 77 655 89999999999988887 68899999999987 777887 5788999999988 5666887 65 88
Q ss_pred CCcCCcccccCCcCCCCccccccc-------ccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccc
Q 002265 657 LRTLDRFVVGGGVDGSNTCRLESL-------KNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRV 724 (945)
Q Consensus 657 L~~L~~~~~~~~~~~~~~~~l~~L-------~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 724 (945)
|+.|++..|.....+. ... +| +.|+|+++ .+.. ++..+..+++|+.|++++|.+
T Consensus 182 L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~----------lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 182 LEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITH----------IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCC----------CCGGGGGSCTTEEEECCSSSC
T ss_pred CCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-ccee----------cCHHHhcCCCCCEEEeeCCcC
Confidence 8888888777665544 221 44 55555543 1111 122344566677777776663
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=1.3e-11 Score=129.42 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=74.7
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP 624 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP 624 (945)
+..+++|++|+ ++++.+..+| .++.+++|++|+|++|.+..+|. ++++++|++|++++|. +..+|
T Consensus 37 ~~~l~~L~~L~------------l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~ 101 (263)
T 1xeu_A 37 QKELSGVQNFN------------GDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLN 101 (263)
T ss_dssp HHHHTTCSEEE------------CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCT
T ss_pred hhhcCcCcEEE------------CcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcC
Confidence 55667778887 6666666676 57777888888888888877776 7788888888888876 66676
Q ss_pred cccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCcccccCC
Q 002265 625 AGIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVGGG 668 (945)
Q Consensus 625 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~ 668 (945)
... . ++|++|++++| .+..+| .++.+++|+.|++..+...
T Consensus 102 ~~~-~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 102 GIP-S-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp TCC-C-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCC
T ss_pred ccc-c-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCC
Confidence 533 3 77888888777 555554 4777777777776665543
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.3e-11 Score=124.69 Aligned_cols=146 Identities=23% Similarity=0.337 Sum_probs=119.4
Q ss_pred CCcEEEEEeecCCCCCCCc-cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFPM-SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
...++++.+..+.+..++. .+..+++|++|++.++. +..+.+..|..+++|++|+ +++|.+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~------------Ls~n~l 88 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLN------------LSTNQL 88 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEE------------CCSSCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEE------------CCCCcC
Confidence 4578999999998887765 46789999999999986 2344556688999999999 666777
Q ss_pred cccCcc-ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCCCCccCccC
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETYSLKYMPIG 650 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~ 650 (945)
..+|.. ++.+.+|++|++++|.+..+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|. .
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-------~ 160 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP-------W 160 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC-------B
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC-------e
Confidence 777765 68999999999999999988775 6899999999999997 7777765 7889999999999983 2
Q ss_pred CCCCCCCCcCCccccc
Q 002265 651 ISKLTSLRTLDRFVVG 666 (945)
Q Consensus 651 i~~L~~L~~L~~~~~~ 666 (945)
.+.+++|+.|+++.+.
T Consensus 161 ~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 161 DCTCPGIRYLSEWINK 176 (208)
T ss_dssp CCCTTTTHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHh
Confidence 3556778888776665
No 119
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.23 E-value=5.2e-11 Score=134.36 Aligned_cols=254 Identities=13% Similarity=0.031 Sum_probs=145.4
Q ss_pred CceecchhHHHHHHHHH-hccccC-CCCeEEEEE--EecCCCcHHHHHHHHhcccccc-------C--------------
Q 002265 181 GEVCGRVDEKNELLSKL-CESSEQ-QKGLHVISL--VGLGGIGKTTLAQLAYNNDEVN-------S-------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l-~~~~~~-~~~~~vi~i--~G~gGiGKTtLa~~~~~~~~~~-------~-------------- 235 (945)
..++||+++++.+.+.+ .....+ ....+.+.| +|++|+||||||+++++..... .
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 432111 012345555 9999999999999887643110 0
Q ss_pred -----------------------------------CceEEEEEcCccCCCc------CChhhHHhhccCC---C--CCcE
Q 002265 236 -----------------------------------RKKIFLVLDDVWDGNC------NKWEPFFRCLKND---L--HGGK 269 (945)
Q Consensus 236 -----------------------------------~~~~LlvlDdv~~~~~------~~~~~l~~~~~~~---~--~gs~ 269 (945)
+++++|||||++.... +.+..+...+... + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 3589999999976321 2222233333221 2 3445
Q ss_pred EEEEcCchHHHHHhc-------CCCceeeeCCCCChHHHHHHHHHHhccC-CCCcchHHHHHHHHHHHHHcC------CC
Q 002265 270 ILVTTRNVSVARMMG-------TTELDIISIEQLAEEECWSLFERLVFFD-RSSEDREKLESIGRKIARNCK------GL 335 (945)
Q Consensus 270 iiiTtr~~~~~~~~~-------~~~~~~~~l~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~------gl 335 (945)
||+||+...+...+. ..-...+.+.+++.++++++|...+... ...... .+....|++.++ |.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCc
Confidence 888888665432221 1111249999999999999997654211 111111 345677888888 99
Q ss_pred hhHHHHHHHH-h----c-CC--CCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhccCC--CCce
Q 002265 336 PLAAKVIGNL-L----R-SK--STVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFP--KDYN 405 (945)
Q Consensus 336 PLai~~~~~~-L----~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp--~~~~ 405 (945)
|..+..+... . . .. -+.+.+..++..... ...+.-+++.||. +.+.++..++.+. .+..
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~--~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSI--HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCC
Confidence 9765554332 1 1 11 133444444332110 2234456788887 7788888888654 2234
Q ss_pred echHHHHHHHHH-h-ccccccccccHHHHHHHHHHHHHHcccccccc
Q 002265 406 MDKHELIDLWMA-Q-DYLNAKANKEMETIGEEYFNILATRSFFQEFE 450 (945)
Q Consensus 406 i~~~~Li~~w~a-e-g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 450 (945)
+...++...+.. . ..... ... .......+++.|.+.+++....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-KPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-CCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCC-CCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 555555444421 1 11110 001 1234567899999999997653
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=8.6e-12 Score=121.26 Aligned_cols=134 Identities=24% Similarity=0.197 Sum_probs=112.4
Q ss_pred CCcEEEEEeecCCCC--CCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 495 GVKVRHLGLNFEGGD--SFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
+..++.+.+..+.+. .+|..+..+++|++|++.++.. ..+ ..+..+++|++|+ +++|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l------~~~--~~~~~l~~L~~L~------------Ls~N~ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL------ISV--SNLPKLPKLKKLE------------LSENR 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC------CCC--SSCCCCSSCCEEE------------EESCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC------CCh--hhhccCCCCCEEE------------CcCCc
Confidence 467889999998887 7888888999999999999872 222 4588899999999 55555
Q ss_pred ccc-cCccccccCcccccccccccccccC--hhhhcCCcccEEEecCCCCccccCc----ccccccCCCeeecCCCCCCc
Q 002265 573 IRE-IPKNVRKLIHLKYLNLSELGIEILP--ETLCELYNLQKLDIRRCRNLRELPA----GIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 573 l~~-lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~----~i~~L~~L~~L~l~~~~~l~ 645 (945)
+.. +|..++.+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++| ...
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~ 160 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQ 160 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSC
T ss_pred CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chh
Confidence 555 7777778999999999999999877 789999999999999998 878886 7889999999999998 566
Q ss_pred cCccC
Q 002265 646 YMPIG 650 (945)
Q Consensus 646 ~lp~~ 650 (945)
.+|.+
T Consensus 161 ~~~~~ 165 (168)
T 2ell_A 161 EAPDS 165 (168)
T ss_dssp BCCSS
T ss_pred hcccc
Confidence 66653
No 121
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=2.6e-10 Score=125.75 Aligned_cols=249 Identities=11% Similarity=0.084 Sum_probs=148.6
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc---------cc----------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND---------EV---------------- 233 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~---------~~---------------- 233 (945)
....|+||+++++.+.+ +.. +++.|+|++|+|||||++++.+.. ..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHH
Confidence 34579999999999998 642 489999999999999998875421 00
Q ss_pred --------------------------------------cC-------------C-ceEEEEEcCccCCCc---CChhhHH
Q 002265 234 --------------------------------------NS-------------R-KKIFLVLDDVWDGNC---NKWEPFF 258 (945)
Q Consensus 234 --------------------------------------~~-------------~-~~~LlvlDdv~~~~~---~~~~~l~ 258 (945)
.. . ++++|||||++.... ..|..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 00 1 488999999976321 2333333
Q ss_pred hhccCCCCCcEEEEEcCchHHHHHh----------cCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHH
Q 002265 259 RCLKNDLHGGKILVTTRNVSVARMM----------GTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKI 328 (945)
Q Consensus 259 ~~~~~~~~gs~iiiTtr~~~~~~~~----------~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i 328 (945)
..+.....+.++|+|++.......+ .......+.+.+|+.+|+.+++...+........ . ...|
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~----~~~i 235 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D----YEVV 235 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C----HHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c----HHHH
Confidence 3333223477899999986543221 1111247899999999999999875421111111 1 1789
Q ss_pred HHHcCCChhHHHHHHHHhcCCCCHHHHHHH-HhhhcccccccCccchhHHH-hhcc--CCCCchHHHHHHhhhccCCCCc
Q 002265 329 ARNCKGLPLAAKVIGNLLRSKSTVEEWESI-LESEMWEVEEIGQGLLAPLL-LSYN--DLPSNSMVKQCFSYCAVFPKDY 404 (945)
Q Consensus 329 ~~~c~glPLai~~~~~~L~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~~k~cfl~~a~fp~~~ 404 (945)
+..++|.|+++..++..+....+...|..- .+... ..+...+. +.++ .+++ ..+..+..+|+ +.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~--~~~~~l~~la~---g~ 303 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARK--RYLNIMRTLSK---CG 303 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHH--HHHHHHHHHTT---CB
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccH--HHHHHHHHHHc---CC
Confidence 999999999999998876533334344221 11100 00111111 2221 4555 77889988888 21
Q ss_pred eechHHHHHHHH-HhccccccccccHHHHHHHHHHHHHHcccccccccCCCCCcceeE-echHHHHH
Q 002265 405 NMDKHELIDLWM-AQDYLNAKANKEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCK-MHDIVHDF 469 (945)
Q Consensus 405 ~i~~~~Li~~w~-aeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~-mHdlv~dl 469 (945)
+...+..... ..|. . .. ......+++.|++.+++.... + .+. .|.++++.
T Consensus 304 --~~~~l~~~~~~~~g~--~---~~-~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 --KWSDVKRALELEEGI--E---IS-DSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp --CHHHHHHHHHHHHCS--C---CC-HHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred --CHHHHHHHHHHhcCC--C---CC-HHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 3333332211 1120 0 01 134567899999999987542 1 244 46777764
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.7e-12 Score=156.25 Aligned_cols=123 Identities=22% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccc
Q 002265 510 SFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYL 589 (945)
Q Consensus 510 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L 589 (945)
..+..+..+++|+.|+++++.. .. ++..+.++++|++|+ |++|.+..+|..|+.|.+|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l------~~-l~~~~~~l~~L~~L~------------Ls~N~l~~lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI------FN-ISANIFKYDFLTRLY------------LNGNSLTELPAEIKNLSNLRVL 275 (727)
T ss_dssp -------CCCCCCEEECTTSCC------SC-CCGGGGGCCSCSCCB------------CTTSCCSCCCGGGGGGTTCCEE
T ss_pred cChhhhccCCCCcEEECCCCCC------CC-CChhhcCCCCCCEEE------------eeCCcCcccChhhhCCCCCCEE
Confidence 3366778899999999999873 23 333355899999999 7777788999999999999999
Q ss_pred ccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCC
Q 002265 590 NLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGIS 652 (945)
Q Consensus 590 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 652 (945)
+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++|+|++|.....+|..+.
T Consensus 276 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 276 DLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp ECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred eCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 99999999999999999999999999997 889999999999999999999965555555443
No 123
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.21 E-value=3e-10 Score=124.94 Aligned_cols=253 Identities=14% Similarity=0.099 Sum_probs=148.6
Q ss_pred cCCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc--------c-----------------
Q 002265 179 DEGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE--------V----------------- 233 (945)
Q Consensus 179 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~--------~----------------- 233 (945)
....|+||+++++.+.+++.. + +++.|+|++|+|||||++++++... .
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~-~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y-PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C-SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhc------C-CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHH
Confidence 345799999999999998864 1 5899999999999999988754210 0
Q ss_pred ----------------------------cC--------------CceEEEEEcCccCCCc------CChhhHHhhccCCC
Q 002265 234 ----------------------------NS--------------RKKIFLVLDDVWDGNC------NKWEPFFRCLKNDL 265 (945)
Q Consensus 234 ----------------------------~~--------------~~~~LlvlDdv~~~~~------~~~~~l~~~~~~~~ 265 (945)
.. .++++||+||++.... ..+......+....
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL 162 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc
Confidence 00 1389999999976431 11112222222222
Q ss_pred CCcEEEEEcCchHHHHHh----c------CCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC
Q 002265 266 HGGKILVTTRNVSVARMM----G------TTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 266 ~gs~iiiTtr~~~~~~~~----~------~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 335 (945)
++.++|+|++.......+ . ......+.+.+|+.+|+.+++............ .+.+..+++.++|.
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEIEEAVELLDGI 238 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHHTTC
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCC
Confidence 578899999876542221 1 011237999999999999999875421111111 24577899999999
Q ss_pred hhHHHHHHHHhcCCCCHHHHHH-HHhhhcccccccCccchhHH-HhhccCCCCchHHHHHHhhhccCCCCceechHHHHH
Q 002265 336 PLAAKVIGNLLRSKSTVEEWES-ILESEMWEVEEIGQGLLAPL-LLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELID 413 (945)
Q Consensus 336 PLai~~~~~~L~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~ 413 (945)
|+++..++..+....+...+.. ..+... ..+...+ .+.++ ++ ..+..+..+|+ + .++...+..
T Consensus 239 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~--~~--~~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRAMKRTLEVAK-------GLIMGELEELRRR--SP--RYVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH--CH--HHHHHHHHHHT---T-CCSHHHHHH
T ss_pred HHHHHHHHHHHhccccHhHHHHHHHHHHH-------HHHHHHHHHHHhC--Ch--hHHHHHHHHHh---C-CCCHHHHHH
Confidence 9999999876532222222211 111100 0011111 12222 44 67888888887 2 134444444
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHcccccccccCCCCCcceeEe-chHHHHHH
Q 002265 414 LWMAQDYLNAKANKEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKM-HDIVHDFA 470 (945)
Q Consensus 414 ~w~aeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~m-Hdlv~dl~ 470 (945)
..... .. +.+ ......+++.|.+.+++.... + .+.+ |.++++..
T Consensus 304 ~~~~~-~~----~~~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 304 YLAVK-GT----KIP-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp HHHHT-TC----CCC-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred HHHHH-hC----CCC-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 33221 00 111 134567899999999997541 1 2444 56666543
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=3.1e-11 Score=126.56 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=104.0
Q ss_pred CcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccc
Q 002265 496 VKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIRE 575 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~ 575 (945)
..++.+.+..+.+..++ .+..+++|++|+++++.. ..+.+ +..+++|++|+ +++|.+..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i------~~~~~--l~~l~~L~~L~------------L~~N~l~~ 99 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI------SDLSP--LKDLTKLEELS------------VNRNRLKN 99 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC------CCCGG--GTTCSSCCEEE------------CCSSCCSC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc------CCChh--hccCCCCCEEE------------CCCCccCC
Confidence 45677777777777666 567788888888887762 23233 77788888888 55555666
Q ss_pred cCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCCCCCccCccCCCCCC
Q 002265 576 IPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGETYSLKYMPIGISKLT 655 (945)
Q Consensus 576 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 655 (945)
+|.... .+|++|++++|.++.+| .++++++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..+..++
T Consensus 100 l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~ 172 (263)
T 1xeu_A 100 LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLK 172 (263)
T ss_dssp CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCC
T ss_pred cCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCC
Confidence 654333 78888888888888775 48888888888888877 77776 4788888888888887 44444 5677777
Q ss_pred CCCcCCcccccC
Q 002265 656 SLRTLDRFVVGG 667 (945)
Q Consensus 656 ~L~~L~~~~~~~ 667 (945)
+|+.|++..+..
T Consensus 173 ~L~~L~l~~N~~ 184 (263)
T 1xeu_A 173 KVNWIDLTGQKC 184 (263)
T ss_dssp CCCEEEEEEEEE
T ss_pred CCCEEeCCCCcc
Confidence 888877766653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=6.2e-12 Score=119.54 Aligned_cols=124 Identities=23% Similarity=0.221 Sum_probs=67.7
Q ss_pred CceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccc
Q 002265 519 DRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEI 598 (945)
Q Consensus 519 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~ 598 (945)
++|+.|+++++.... ..++..+..+++|++|+ +++|.+..+ ..++.+++|++|++++|.+..
T Consensus 17 ~~l~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~------------l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNE-----GKLEGLTDEFEELEFLS------------TINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBT-----TBCCSCCTTCTTCCEEE------------CTTSCCCCC-TTCCCCTTCCEEECCSSCCCS
T ss_pred ccCeEEEccCCcCCh-----hHHHHHHhhcCCCcEEE------------CcCCCCCCc-hhhhcCCCCCEEECCCCcccc
Confidence 455555555544100 11233345566666666 444444444 445566666666666666664
Q ss_pred -cChhhhcCCcccEEEecCCCCccccC--cccccccCCCeeecCCCCCCccCcc----CCCCCCCCCcCCc
Q 002265 599 -LPETLCELYNLQKLDIRRCRNLRELP--AGIGKLMNMRSLLNGETYSLKYMPI----GISKLTSLRTLDR 662 (945)
Q Consensus 599 -lp~~i~~L~~L~~L~L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~ 662 (945)
+|..++.+++|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 55555566666666666665 54443 55666666666666666 3444443 3555555555554
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=3.5e-11 Score=123.45 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=111.6
Q ss_pred CCcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++.|.+..+.+..+ +..+..+++|++|+++++. +..+.+..|..+++|++|+ +++|.+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~------------Ls~N~l 100 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLD------------LGTNQL 100 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEE------------CCSSCC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEE------------CCCCcC
Confidence 46789999999998876 6678899999999999987 2344556688999999999 777777
Q ss_pred cccCcc-ccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCC
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETY 642 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 642 (945)
..+|.. +..+.+|++|+|++|.+..+|..+.++++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 778765 688999999999999999999999999999999999997 777875 57889999999999984
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.4e-11 Score=120.71 Aligned_cols=131 Identities=23% Similarity=0.161 Sum_probs=96.2
Q ss_pred cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccc
Q 002265 514 SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSE 593 (945)
Q Consensus 514 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~ 593 (945)
.+.++++|+.|.+.++.. .. ++.+....++|++|+ +++|.+..+ ..++.+++|++|++++
T Consensus 14 ~~~~~~~L~~L~l~~n~l------~~-i~~~~~~~~~L~~L~------------Ls~N~l~~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI------PV-IENLGATLDQFDAID------------FSDNEIRKL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp EEECTTSCEEEECTTSCC------CS-CCCGGGGTTCCSEEE------------CCSSCCCEE-CCCCCCSSCCEEECCS
T ss_pred hcCCcCCceEEEeeCCCC------ch-hHHhhhcCCCCCEEE------------CCCCCCCcc-cccccCCCCCEEECCC
Confidence 345677888888888762 12 233233344888888 555666666 5678888899999999
Q ss_pred ccccccChhh-hcCCcccEEEecCCCCccccCc--ccccccCCCeeecCCCCCCccCccC----CCCCCCCCcCCccccc
Q 002265 594 LGIEILPETL-CELYNLQKLDIRRCRNLRELPA--GIGKLMNMRSLLNGETYSLKYMPIG----ISKLTSLRTLDRFVVG 666 (945)
Q Consensus 594 ~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~~~~~~ 666 (945)
|.|..+|+.+ +.+++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+.
T Consensus 74 N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 74 NRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888887665 888899999998887 777886 7888888999998888 45566664 7777788887766554
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.2e-11 Score=134.37 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=104.9
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhc-cCCccceEeeccccccccccccCCCcccccCc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFS-KLVCLRALVIRQSSLYFHPFHLDPNSIREIPK 578 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~ 578 (945)
.+.+..+++..+|..+. +.++.|+++++. +..+.+..|. .+++|++|+ +++|.+..+|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~------------L~~N~i~~i~~ 81 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLL------------LSHNHLNFISS 81 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC------CCEECTTSSSSCCTTCCEEE------------CCSSCCCEECT
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC------CCccChhhhhhcccccCEEE------------CCCCcCCccCh
Confidence 45666666777776543 457888888876 3344455565 788888888 66666677664
Q ss_pred -cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCcccc-CcccccccCCCeeecCCCCCCccCccCC----
Q 002265 579 -NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLREL-PAGIGKLMNMRSLLNGETYSLKYMPIGI---- 651 (945)
Q Consensus 579 -~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~i---- 651 (945)
.+..+.+|++|+|++|.+..+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~ 159 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDG 159 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC--
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCc
Confidence 57888888888888888887665 57888888888888887 5444 567788888888888887 666677654
Q ss_pred CCCCCCCcCCcccccCCc
Q 002265 652 SKLTSLRTLDRFVVGGGV 669 (945)
Q Consensus 652 ~~L~~L~~L~~~~~~~~~ 669 (945)
..+++|+.|++..+....
T Consensus 160 ~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp --CTTCCEEECCSSCCCC
T ss_pred ccCCcCCEEECCCCCCCc
Confidence 567777777776665443
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=1.1e-10 Score=121.14 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=113.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEE
T ss_pred HHHhCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceE
Confidence 469999999999999986532 23478999999999999999887643210
Q ss_pred -------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 235 -------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 235 -------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
.+++.+||+||++......++.+...+.....+..+|+||+... +...+... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r-~ 177 (250)
T 1njg_A 99 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-C 177 (250)
T ss_dssp EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-S
T ss_pred EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH-h
Confidence 03578999999987655566777777766666788888887643 22222222 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNL 345 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 345 (945)
..+.+.+++.++..+++...+........ .+....|++.|+|.|..+..+...
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 48999999999999999987753322222 244678999999999988876543
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=5.2e-11 Score=121.23 Aligned_cols=129 Identities=22% Similarity=0.310 Sum_probs=110.6
Q ss_pred CCcEEEEEeecCCCCCCCc-cccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcc
Q 002265 495 GVKVRHLGLNFEGGDSFPM-SICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSI 573 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l 573 (945)
+..++.|.+..+.+..++. .+..+++|+.|+++++. +..+.+..|..+++|++|+ +++|.+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~------------Ls~N~l 92 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLNSLV------------LYGNKI 92 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCCEEE------------CCSSCC
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCCEEE------------CCCCcC
Confidence 3578999999999887754 78889999999999987 3355577799999999999 777777
Q ss_pred cccCcc-ccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCC
Q 002265 574 REIPKN-VRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETY 642 (945)
Q Consensus 574 ~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 642 (945)
..+|.. +..+.+|++|+|++|.|..+ |..+.++++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 888876 58899999999999999976 5679999999999999998 777765 48889999999999983
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2.1e-11 Score=115.82 Aligned_cols=125 Identities=26% Similarity=0.238 Sum_probs=105.9
Q ss_pred CCcEEEEEeecCCCC--CCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 495 GVKVRHLGLNFEGGD--SFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
...++++.+..+.+. .+|..+..+++|++|+++++.. ..+ ..+..+++|++|+ +++|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~--~~~~~l~~L~~L~------------Ls~n~ 75 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------TSI--ANLPKLNKLKKLE------------LSDNR 75 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC------CCC--TTCCCCTTCCEEE------------CCSSC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC------CCc--hhhhcCCCCCEEE------------CCCCc
Confidence 467889999998887 7788889999999999999862 222 4588899999999 66666
Q ss_pred ccc-cCccccccCcccccccccccccccC--hhhhcCCcccEEEecCCCCccccCc----ccccccCCCeeecCC
Q 002265 573 IRE-IPKNVRKLIHLKYLNLSELGIEILP--ETLCELYNLQKLDIRRCRNLRELPA----GIGKLMNMRSLLNGE 640 (945)
Q Consensus 573 l~~-lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~----~i~~L~~L~~L~l~~ 640 (945)
+.. +|..++.+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 666 7777788999999999999999865 889999999999999997 777776 688999999998863
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=3.6e-11 Score=132.74 Aligned_cols=150 Identities=23% Similarity=0.252 Sum_probs=118.2
Q ss_pred CCcEEEEEeecCCCCCCCcc-cc-CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 495 GVKVRHLGLNFEGGDSFPMS-IC-GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
+..++.|.++.+.+..++.. +. .+++|++|+++++. +..+.+..|..+++|++|+ +++|.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~------------Ls~N~ 99 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH------LNFISSEAFVPVPNLRYLD------------LSSNH 99 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEE------------CCSSC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc------CCccChhhccCCCCCCEEE------------CCCCc
Confidence 44578899999998877554 44 89999999999987 3455566789999999999 77777
Q ss_pred ccccCc-cccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCccc----ccccCCCeeecCCCCCCcc
Q 002265 573 IREIPK-NVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPAGI----GKLMNMRSLLNGETYSLKY 646 (945)
Q Consensus 573 l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~i----~~L~~L~~L~l~~~~~l~~ 646 (945)
+..+|. .+..+.+|++|+|++|.|..+ |..+.++++|++|+|++|. +..+|..+ ..+++|++|++++| .+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 177 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKK 177 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence 777765 578999999999999999966 6789999999999999998 88899876 57999999999998 5666
Q ss_pred Ccc-CCCCCCC--CCcCCccc
Q 002265 647 MPI-GISKLTS--LRTLDRFV 664 (945)
Q Consensus 647 lp~-~i~~L~~--L~~L~~~~ 664 (945)
+|. .+..++. |+.|++..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCS
T ss_pred cCHHHhhhccHhhcceEEecC
Confidence 663 3444444 24454443
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=118.99 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=108.7
Q ss_pred CCcEEEEEeecCCCCCCC--ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCc
Q 002265 495 GVKVRHLGLNFEGGDSFP--MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
+..++.|.+..+.+..++ ..+..+++|++|+++++. +..+.+..|..+++|++|+ +++|.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~------------Ls~N~ 92 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEIL------------LTSNR 92 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEE------------CCSSC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEE------------CCCCc
Confidence 345678999999888763 347899999999999987 3355566789999999999 77777
Q ss_pred ccccCcc-ccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCcccc-CcccccccCCCeeecCCCC
Q 002265 573 IREIPKN-VRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLREL-PAGIGKLMNMRSLLNGETY 642 (945)
Q Consensus 573 l~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~ 642 (945)
+..+|.. ++.+.+|++|+|++|.|..+ |..+.++++|++|+|++|. +..+ |..+..+++|++|++++|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 7777654 88999999999999999976 6789999999999999998 6665 7789999999999999984
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1.1e-10 Score=114.20 Aligned_cols=127 Identities=23% Similarity=0.177 Sum_probs=107.2
Q ss_pred CCcEEEEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 495 GVKVRHLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 495 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
...++.+.+.++.+..++......++|++|+++++.. ..+ ..+..+++|++|+ +++|.+.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l------~~~--~~l~~l~~L~~L~------------Ls~N~l~ 77 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI------RKL--DGFPLLRRLKTLL------------VNNNRIC 77 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC------CEE--CCCCCCSSCCEEE------------CCSSCCC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC------Ccc--cccccCCCCCEEE------------CCCCccc
Confidence 4578999999998888765333344999999999872 232 3488899999999 7777788
Q ss_pred ccCccc-cccCcccccccccccccccCh--hhhcCCcccEEEecCCCCccccCcc----cccccCCCeeecCCCC
Q 002265 575 EIPKNV-RKLIHLKYLNLSELGIEILPE--TLCELYNLQKLDIRRCRNLRELPAG----IGKLMNMRSLLNGETY 642 (945)
Q Consensus 575 ~lp~~i-~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lP~~----i~~L~~L~~L~l~~~~ 642 (945)
.+|..+ +.+++|++|++++|.|..+|. .++.+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 888765 899999999999999999997 89999999999999998 7888885 8999999999998874
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2e-10 Score=133.87 Aligned_cols=90 Identities=22% Similarity=0.193 Sum_probs=51.8
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCcccc-
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLREL- 623 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l- 623 (945)
+..+++|+.|+ +++|.+..+|..++.+++|++|+|++|.|+.+| .+++|++|++|+|++|. +..+
T Consensus 459 ~~~l~~L~~L~------------Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~ 524 (567)
T 1dce_A 459 LEQLLLVTHLD------------LSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSA 524 (567)
T ss_dssp GGGGTTCCEEE------------CCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSS
T ss_pred ccccccCcEee------------cCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCC
Confidence 45555566666 444555555666666666666666666666555 56666666666666655 4444
Q ss_pred -CcccccccCCCeeecCCCCCCccCcc
Q 002265 624 -PAGIGKLMNMRSLLNGETYSLKYMPI 649 (945)
Q Consensus 624 -P~~i~~L~~L~~L~l~~~~~l~~lp~ 649 (945)
|..++.+++|++|++++| .+..+|.
T Consensus 525 ~p~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp TTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred CcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence 555666666666666655 3444443
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=2.4e-10 Score=113.52 Aligned_cols=122 Identities=24% Similarity=0.288 Sum_probs=55.1
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHH-HhccCCccceEeeccccccccccccCCCccccc-C
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSE-LFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI-P 577 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p 577 (945)
.+.+..+++..+|..+. .++++|.+.++.. ..+.+. .|..+++|++|+ +++|.+..+ |
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i------~~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~ 71 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNEL------GRISSDGLFGRLPHLVKLE------------LKRNQLTGIEP 71 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCC------CSBCCSCSGGGCTTCCEEE------------CCSSCCCCBCT
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcC------CccCCccccccCCCCCEEE------------CCCCCCCCcCH
Confidence 34445555555544332 2455555555431 111111 244455555555 333333333 3
Q ss_pred ccccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCC
Q 002265 578 KNVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 578 ~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~ 641 (945)
..++.+.+|++|+|++|.|+.+|. .++++++|++|+|++|......|..+..+++|++|++++|
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 444555555555555555553332 2445555555555555422223444445555555555544
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=4.5e-10 Score=111.57 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=79.6
Q ss_pred ccceEeeccccccccccccCCCcccccCcc--ccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCc-
Q 002265 550 CLRALVIRQSSLYFHPFHLDPNSIREIPKN--VRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPA- 625 (945)
Q Consensus 550 ~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~--i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~- 625 (945)
.|++|+ +++|.+..+|.. ++.+++|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|.
T Consensus 30 ~l~~L~------------l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 96 (192)
T 1w8a_A 30 HTTELL------------LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNK 96 (192)
T ss_dssp TCSEEE------------CCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSS
T ss_pred CCCEEE------------CCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHH
Confidence 788888 666667777653 78888888888888888866 6778888888888888887 555554
Q ss_pred ccccccCCCeeecCCCCCCccCccCCCCCCCCCcCCccccc
Q 002265 626 GIGKLMNMRSLLNGETYSLKYMPIGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 626 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~ 666 (945)
.+..+++|++|++++|......|..++.+++|++|++..+.
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 47788888888888885444557778888888888776654
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=9.5e-10 Score=109.21 Aligned_cols=98 Identities=19% Similarity=0.311 Sum_probs=72.0
Q ss_pred cCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCcc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKY 646 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~ 646 (945)
++++.+..+|..+. .+|++|++++|.|+.+|..+.++++|++|+|++|. +..+| ..+..+++|++|++++| .+..
T Consensus 17 ~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~ 92 (193)
T 2wfh_A 17 CSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRC 92 (193)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCB
T ss_pred cCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCE
Confidence 66677777777653 57888888888888888888888888888888877 65555 35778888888888887 4555
Q ss_pred Ccc-CCCCCCCCCcCCcccccCCc
Q 002265 647 MPI-GISKLTSLRTLDRFVVGGGV 669 (945)
Q Consensus 647 lp~-~i~~L~~L~~L~~~~~~~~~ 669 (945)
+|. .++.+++|+.|++..+....
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCB
T ss_pred eCHHHhCCCCCCCEEECCCCCCCe
Confidence 543 57777777777776655443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=8.6e-10 Score=108.03 Aligned_cols=121 Identities=26% Similarity=0.400 Sum_probs=73.1
Q ss_pred EEEeecCCCCCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCcc
Q 002265 500 HLGLNFEGGDSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN 579 (945)
Q Consensus 500 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~ 579 (945)
.+.+..+++..+|..+ .++|++|.+.++.. ..+.+..|..+++|++|+ +++|.+..+|..
T Consensus 11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~ 70 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKL------QSLPHGVFDKLTQLTKLS------------LSQNQIQSLPDG 70 (177)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECCSSCC------CCCCTTTTTTCTTCSEEE------------CCSSCCCCCCTT
T ss_pred EEEecCCCCccCCCCC--CCCCcEEEeCCCcc------cEeCHHHhcCcccccEEE------------CCCCcceEeChh
Confidence 4455555555555433 35677777766652 233344456667777777 555555555543
Q ss_pred -ccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCccc-ccccCCCeeecCCC
Q 002265 580 -VRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAGI-GKLMNMRSLLNGET 641 (945)
Q Consensus 580 -i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~ 641 (945)
++.+.+|++|++++|.++.+|.. ++++++|++|++++|. +..+|..+ ..+++|++|++++|
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 46667777777777777666554 4667777777777665 55666543 55667777777666
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=6.9e-10 Score=110.22 Aligned_cols=95 Identities=26% Similarity=0.387 Sum_probs=47.2
Q ss_pred cCCCcccccCccccccCcccccccccccccccC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~ 645 (945)
+++|.+..+|..+..+.+|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|. .+..+++|++|++++| .+.
T Consensus 38 L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~ 115 (193)
T 2wfh_A 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DIS 115 (193)
T ss_dssp CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCC
Confidence 444444455555555555555555555555443 235555555555555554 433332 3455555555555555 344
Q ss_pred cCccC-CCCCCCCCcCCccc
Q 002265 646 YMPIG-ISKLTSLRTLDRFV 664 (945)
Q Consensus 646 ~lp~~-i~~L~~L~~L~~~~ 664 (945)
.+|.. +..+++|+.|++..
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCS
T ss_pred eeChhhhhcCccccEEEeCC
Confidence 44432 44455555554433
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.97 E-value=2.2e-09 Score=109.51 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=107.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|++..++.+.+++... ....+.|+|++|+|||++|+.+++.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHH
Confidence 46899999999999998653 22238999999999999999887642100
Q ss_pred --------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHH
Q 002265 235 --------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 235 --------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
..++.+||+||++......++.+...+.....+.++|+||+... +...+... ...+.+.+++.++..+++
T Consensus 92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r-~~~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR-CAVFRFKPVPKEAMKKRL 170 (226)
T ss_dssp HHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHH
T ss_pred HhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh-CceeecCCCCHHHHHHHH
Confidence 04678999999987654455666666666566788898887653 22222222 237999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
.+.+........ .+....+++.++|.|..+..+
T Consensus 171 ~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 171 LEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 887643222122 234567888999999865543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=1e-11 Score=124.34 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=60.0
Q ss_pred CCCCccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccc
Q 002265 509 DSFPMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKY 588 (945)
Q Consensus 509 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~ 588 (945)
..+|..+..+++|++|+++++.. .. ++ .+..+++|++|+ +++|.+..+|..++.+++|++
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l------~~-l~-~~~~l~~L~~L~------------l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNI------EK-IS-SLSGMENLRILS------------LGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEE------SC-CC-CHHHHTTCCEEE------------EEEEEECSCSSHHHHHHHCSE
T ss_pred hhhhHHHhcCCCCCEEECCCCCC------cc-cc-ccccCCCCCEEE------------CCCCCcccccchhhcCCcCCE
Confidence 34444555566666666655541 11 22 345555666666 333344455555555566666
Q ss_pred cccccccccccChhhhcCCcccEEEecCCCCccccCc--ccccccCCCeeecCCC
Q 002265 589 LNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA--GIGKLMNMRSLLNGET 641 (945)
Q Consensus 589 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~ 641 (945)
|++++|.+..+| .++++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 98 LWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 666666666555 45566666666666655 444443 4555666666666655
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=1.7e-11 Score=122.79 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=86.8
Q ss_pred hHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCCcccEEEecCCCCc
Q 002265 541 LSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNL 620 (945)
Q Consensus 541 ~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 620 (945)
++..+..+++|++|+ +++|.+..+| .++.+++|++|++++|.+..+|..+..+++|++|++++|. +
T Consensus 40 l~~~~~~l~~L~~L~------------ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l 105 (198)
T 1ds9_A 40 MDATLSTLKACKHLA------------LSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-I 105 (198)
T ss_dssp CHHHHHHTTTCSEEE------------CSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-C
T ss_pred hhHHHhcCCCCCEEE------------CCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-C
Confidence 344688889999999 6666667777 7888999999999999999899888888999999999986 7
Q ss_pred cccCcccccccCCCeeecCCCCCCccCcc--CCCCCCCCCcCCccccc
Q 002265 621 RELPAGIGKLMNMRSLLNGETYSLKYMPI--GISKLTSLRTLDRFVVG 666 (945)
Q Consensus 621 ~~lP~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~~~~~~ 666 (945)
..+| .+..+++|++|++++| .+..+|. .+..+++|++|++..+.
T Consensus 106 ~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 106 ASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 7777 5888999999999888 4555443 56777777777765543
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.87 E-value=2.4e-08 Score=111.34 Aligned_cols=250 Identities=13% Similarity=0.008 Sum_probs=143.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc---------ccc-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND---------EVN----------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~---------~~~----------------- 234 (945)
..++||+++++++..++..... ....+.+.|+|++|+||||+|+.+++.. ...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR-GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS-SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 6799999999999998854311 2345689999999999999999887643 100
Q ss_pred ------------------------------CCceEEEEEcCccCCCcC--ChhhHHhhccCC-----CCCcEEEEEcCch
Q 002265 235 ------------------------------SRKKIFLVLDDVWDGNCN--KWEPFFRCLKND-----LHGGKILVTTRNV 277 (945)
Q Consensus 235 ------------------------------~~~~~LlvlDdv~~~~~~--~~~~l~~~~~~~-----~~gs~iiiTtr~~ 277 (945)
.+++.+||||+++..... ..+.+...+... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 045889999999754222 223333323211 3456788888765
Q ss_pred HH----HHHh-cCCCceeeeCCCCChHHHHHHHHHHhcc--CCCCcchHHHHHHHHHHHHHcC---CCh-hHHHHHHHHh
Q 002265 278 SV----ARMM-GTTELDIISIEQLAEEECWSLFERLVFF--DRSSEDREKLESIGRKIARNCK---GLP-LAAKVIGNLL 346 (945)
Q Consensus 278 ~~----~~~~-~~~~~~~~~l~~l~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~c~---glP-Lai~~~~~~L 346 (945)
.. .... .......+.+.+++.++..+++...+.. ...... + +....+++.++ |.| .|+..+..+.
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-P---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-S---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-H---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 21 1111 1111137999999999999999887531 111111 1 23456667776 988 3333332222
Q ss_pred c-----CC--CCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhc-cCCCCceechHHHHHHHHH-
Q 002265 347 R-----SK--STVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCA-VFPKDYNMDKHELIDLWMA- 417 (945)
Q Consensus 347 ~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a-~fp~~~~i~~~~Li~~w~a- 417 (945)
. +. -+.+.+..++.... ...+.-++..|+. +.+..++.++ ++.....+....+.+....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~--~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPL--HAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCH--HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 21 15666666665321 1234556778877 5566665555 3322223444444333221
Q ss_pred -hccccccccccHHHHHHHHHHHHHHcccccccc
Q 002265 418 -QDYLNAKANKEMETIGEEYFNILATRSFFQEFE 450 (945)
Q Consensus 418 -eg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 450 (945)
+.. .. ..........+++.|...+++....
T Consensus 322 ~~~~-~~--~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTL-GL--EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHT-TC--CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhc-CC--CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 111 00 0112345677899999999988643
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=3.3e-09 Score=103.28 Aligned_cols=96 Identities=25% Similarity=0.341 Sum_probs=81.7
Q ss_pred cCCCcccccCccccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~ 645 (945)
++++.+..+|..+. .+|++|+|++|.|..+ |..++++++|++|+|++|. +..+|.. +.++++|++|++++| .+.
T Consensus 19 ~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 19 CQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred eCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccc
Confidence 77788888998775 8899999999999977 5678999999999999987 8888876 478999999999998 677
Q ss_pred cCccC-CCCCCCCCcCCcccccC
Q 002265 646 YMPIG-ISKLTSLRTLDRFVVGG 667 (945)
Q Consensus 646 ~lp~~-i~~L~~L~~L~~~~~~~ 667 (945)
.+|.. ++.+++|+.|++..+..
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCB
T ss_pred eeCHHHhccccCCCEEEeCCCCc
Confidence 77765 88899999998877653
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=4.7e-09 Score=101.79 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=81.9
Q ss_pred cCCCcccccCccccccCccccccccccccccc-ChhhhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEIL-PETLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~ 645 (945)
++++.+..+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|.. +..+++|++|++++| .+.
T Consensus 16 ~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~ 91 (170)
T 3g39_A 16 CSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QLK 91 (170)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred eCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-ccC
Confidence 77888888998774 8899999999999977 6678999999999999997 7788876 478999999999998 677
Q ss_pred cCccC-CCCCCCCCcCCcccccC
Q 002265 646 YMPIG-ISKLTSLRTLDRFVVGG 667 (945)
Q Consensus 646 ~lp~~-i~~L~~L~~L~~~~~~~ 667 (945)
.+|.. ++.+++|+.|++..+..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeCHHHhcCCCCCCEEEeCCCCC
Confidence 77764 88999999998877653
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.81 E-value=7e-09 Score=112.56 Aligned_cols=162 Identities=19% Similarity=0.139 Sum_probs=103.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc----------------------CCce
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN----------------------SRKK 238 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~----------------------~~~~ 238 (945)
.+++|++..++.+...+............+.|+|++|+|||++|+++++..... ..+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 91 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEG 91 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCC
Confidence 569999999999888875321111234578899999999999999998753321 1356
Q ss_pred EEEEEcCccCCCcCChhhHHhhccCCC------------------CCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChH
Q 002265 239 IFLVLDDVWDGNCNKWEPFFRCLKNDL------------------HGGKILVTTRNVS-VARMMGTTELDIISIEQLAEE 299 (945)
Q Consensus 239 ~LlvlDdv~~~~~~~~~~l~~~~~~~~------------------~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~ 299 (945)
.+|+||++........+.+...+.... ++..+|.||.... +...+...-...+.+.+++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 799999997754334444544443221 2345666665432 111111111237999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002265 300 ECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGNLL 346 (945)
Q Consensus 300 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 346 (945)
+..+++...+........ .+....+++.++|.|-.+..+...+
T Consensus 172 e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999887643222122 2456778899999998877665443
No 148
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.81 E-value=1.2e-07 Score=105.56 Aligned_cols=249 Identities=11% Similarity=0.011 Sum_probs=142.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc-----------cc----------c-----
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND-----------EV----------N----- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~-----------~~----------~----- 234 (945)
..++||+++++++..++..... ....+.+.|+|++|+||||||+.+++.. .. .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 6799999999999988864221 2235689999999999999999988642 00 0
Q ss_pred ---------------------C-----------CceEEEEEcCccCCCcCC-hhhHHhhccCCCCCcEEEEEcCchH---
Q 002265 235 ---------------------S-----------RKKIFLVLDDVWDGNCNK-WEPFFRCLKNDLHGGKILVTTRNVS--- 278 (945)
Q Consensus 235 ---------------------~-----------~~~~LlvlDdv~~~~~~~-~~~l~~~~~~~~~gs~iiiTtr~~~--- 278 (945)
. .++.+|||||++...... .+.+...+.....+..||+||+...
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 0 223499999997643222 2330223322226788999998752
Q ss_pred -HHHHhcCCCceeeeCCCCChHHHHHHHHHHhcc-CCCCcchHHHHHHHHHHHHHcC---CChh-HHHHHHHHh--c-C-
Q 002265 279 -VARMMGTTELDIISIEQLAEEECWSLFERLVFF-DRSSEDREKLESIGRKIARNCK---GLPL-AAKVIGNLL--R-S- 348 (945)
Q Consensus 279 -~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~L--~-~- 348 (945)
+.......-...+.+.+++.++..++|...+.. .......+ +....+++.++ |.|. |+..+..+. . +
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 111111111128999999999999999987531 11111111 23455666666 8775 444433322 2 1
Q ss_pred -CCCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhccCCCCceechHHHHHHHHHhccccccccc
Q 002265 349 -KSTVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKDYNMDKHELIDLWMAQDYLNAKANK 427 (945)
Q Consensus 349 -~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~aeg~~~~~~~~ 427 (945)
.-+.+.+..++.... ...+..+++.|+. +.|..+..++....+-.+. +... -+++.+- . ...
T Consensus 256 ~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~--~~~~~l~al~~~~~~~~~~-~~~~--~~~~~~g-~-~~~ 318 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE----------QERLIEAVKALPF--HYKLALRSLIESEDVMSAH-KMYT--DLCNKFK-Q-KPL 318 (384)
T ss_dssp SCCCHHHHHHHHHHHH----------HHHHHHHHHSSCH--HHHHHHHHHHTCCBHHHHH-HHHH--HHHHHTT-C-CCC
T ss_pred CccCHHHHHHHHHHHh----------cchHHHHHHcCCH--HHHHHHHHHHHhcccChHH-HHHH--HHHHHcC-C-CCC
Confidence 226677777765421 1335567778876 5566665555511101110 0111 1222110 0 011
Q ss_pred cHHHHHHHHHHHHHHccccccccc
Q 002265 428 EMETIGEEYFNILATRSFFQEFEK 451 (945)
Q Consensus 428 ~~~~~~~~~~~~L~~~sll~~~~~ 451 (945)
.......++..|...+++.....
T Consensus 319 -~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 319 -SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp -CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred -CHHHHHHHHHHHHhCCCEEEEec
Confidence 12345678999999999986543
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=6.7e-09 Score=101.05 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=54.3
Q ss_pred CccceEeeccccccccccccCCCccccc-CccccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcc
Q 002265 549 VCLRALVIRQSSLYFHPFHLDPNSIREI-PKNVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAG 626 (945)
Q Consensus 549 ~~Lr~L~l~~~~~~~~~l~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~ 626 (945)
+.|++|+ +++|.+..+ |..++.+++|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|..
T Consensus 33 ~~L~~L~------------Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLW------------LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRG 99 (174)
T ss_dssp TTCSEEE------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCcEEE------------eCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHH
Confidence 5667777 555555555 44566777777777777777777665 3677777777777766 6666654
Q ss_pred -cccccCCCeeecCCC
Q 002265 627 -IGKLMNMRSLLNGET 641 (945)
Q Consensus 627 -i~~L~~L~~L~l~~~ 641 (945)
+..+++|++|++++|
T Consensus 100 ~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTCTTCSEEECCSS
T ss_pred HhccccCCCEEEeCCC
Confidence 667777777777776
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.3e-08 Score=99.51 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=56.6
Q ss_pred cCCCcccccCccccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCCCCc
Q 002265 568 LDPNSIREIPKNVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETYSLK 645 (945)
Q Consensus 568 l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~ 645 (945)
++++.+..+|..+. .+|++|++++|.+..+|.. ++++++|++|++++|. +..+|.. +..+++|++|++++| .+.
T Consensus 14 ~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~ 89 (177)
T 2o6r_A 14 CNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQ 89 (177)
T ss_dssp CCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred ecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-Ccc
Confidence 55555666665442 5667777777766655543 4666777777777665 5555543 456677777777666 344
Q ss_pred cCccC-CCCCCCCCcCCccccc
Q 002265 646 YMPIG-ISKLTSLRTLDRFVVG 666 (945)
Q Consensus 646 ~lp~~-i~~L~~L~~L~~~~~~ 666 (945)
.+|.. ++.+++|++|++..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhhCCcccCEEECcCCc
Confidence 44443 4566666666655443
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.77 E-value=1.2e-07 Score=105.75 Aligned_cols=274 Identities=13% Similarity=0.046 Sum_probs=153.3
Q ss_pred CceecchhHHHHHHHHHhccccC-CCCeEEEEEEecCCCcHHHHHHHHhcccccc--C----------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ-QKGLHVISLVGLGGIGKTTLAQLAYNNDEVN--S---------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~-~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~--~---------------------- 235 (945)
+.++||+.+++++..++.....+ ....+.+.|+|++|+||||||+.+++..... .
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 67999999999999988653111 1123489999999999999999887643211 0
Q ss_pred ---------------------------CceEEEEEcCccCCCcCChhhHHhhccCCC----CCcEEEEEcCchHHHHHhc
Q 002265 236 ---------------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL----HGGKILVTTRNVSVARMMG 284 (945)
Q Consensus 236 ---------------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~----~gs~iiiTtr~~~~~~~~~ 284 (945)
++..+||||+++..+......+...+.... .+..||++|+.......+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 247799999998764344444444443211 4667888887664332211
Q ss_pred C-----CCceeeeCCCCChHHHHHHHHHHhccCC-CCcchHHHHHHHHHHHHHc---------CCChhHHHHH-HHHhc-
Q 002265 285 T-----TELDIISIEQLAEEECWSLFERLVFFDR-SSEDREKLESIGRKIARNC---------KGLPLAAKVI-GNLLR- 347 (945)
Q Consensus 285 ~-----~~~~~~~l~~l~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c---------~glPLai~~~-~~~L~- 347 (945)
. .....+.+.+++.++..+++...+.... ..... .+....+++.+ +|.|-.+..+ ..+..
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 0 0112699999999999999988753210 11111 34566788888 6876443333 22221
Q ss_pred ----CCC--CHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhccCC---CCceechHHHHHHHHH-
Q 002265 348 ----SKS--TVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFP---KDYNMDKHELIDLWMA- 417 (945)
Q Consensus 348 ----~~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp---~~~~i~~~~Li~~w~a- 417 (945)
+.. +.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+..
T Consensus 254 a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~--~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 254 AQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPL--HEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCH--HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCH--HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 111 3333333333211 0112233455665 6676666666543 2224555555554432
Q ss_pred ---hccccccccccHHHHHHHHHHHHHHccccccccc----CCCCCccee----EechHHHHHHHHhh
Q 002265 418 ---QDYLNAKANKEMETIGEEYFNILATRSFFQEFEK----NDDDNIRSC----KMHDIVHDFAQFVS 474 (945)
Q Consensus 418 ---eg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~----~~~~~~~~~----~mHdlv~dl~~~i~ 474 (945)
.|... . .......+++.|.+.+++..... +..+....+ ..|+++..+...+.
T Consensus 322 ~~~~~~~~----~-~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 322 CEEYGERP----R-VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHTTCCC----C-CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHcCCCC----C-CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHH
Confidence 12111 0 12345678999999999987543 112332222 24566666655443
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=3e-08 Score=107.65 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecCCCCCcCCC--CCccc-cc-eEeeccccCceEeCccccCCCCCCC
Q 002265 749 PLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSCVDCEHLPP--LGKLA-LE-KLELGNLKSVKRLGNEFLGIEESSE 823 (945)
Q Consensus 749 ~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~-~L~l~~~~~L~~l~~~~~~~~~~~~ 823 (945)
+++|+.|.+.++....+|. .+..+.+|+.|+|.++ +..++. +..++ |+ .+.+.+ +++.++...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-------- 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-------- 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT--------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh--------
Confidence 6889999999887777766 4678999999999886 666654 66777 88 888876 567775432
Q ss_pred CCCCCCCCCCcCcCCCccceeeccC
Q 002265 824 DDPSSSSSSSSVTAFPKLKSLEIKG 848 (945)
Q Consensus 824 ~~~~~~~~~~~~~~~~~L~~L~L~~ 848 (945)
+.++++|+.+++.+
T Consensus 293 -----------F~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 293 -----------FMGCDNLRYVLATG 306 (329)
T ss_dssp -----------TTTCTTEEEEEECS
T ss_pred -----------hhCCccCCEEEeCC
Confidence 34788999998865
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=4e-08 Score=106.46 Aligned_cols=154 Identities=12% Similarity=0.157 Sum_probs=106.4
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|++..++.+..++... ....+.++|++|+||||+|+.+++....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-----NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHH
Confidence 46999999999999998643 2223899999999999999988765210
Q ss_pred ------c--CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHH
Q 002265 234 ------N--SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSL 304 (945)
Q Consensus 234 ------~--~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~l 304 (945)
. .+++.++|+||++......++.+...+.....++++|+||+... +...+... ...+++.+++.++..++
T Consensus 96 ~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr-~~~i~~~~~~~~~~~~~ 174 (323)
T 1sxj_B 96 FAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ-CAILRYSKLSDEDVLKR 174 (323)
T ss_dssp HHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHH
T ss_pred HHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh-ceEEeecCCCHHHHHHH
Confidence 0 13478999999987654455566666665566788888887643 22222222 34899999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHHHH
Q 002265 305 FERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVIGN 344 (945)
Q Consensus 305 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 344 (945)
+...+........ .+....+++.++|.|. |+..+..
T Consensus 175 l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 175 LLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9887642221112 2356778899999995 4444443
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=2.2e-08 Score=108.77 Aligned_cols=286 Identities=11% Similarity=0.087 Sum_probs=159.5
Q ss_pred CCceeEEEeccCCCCCCCchhhhhHHHhcc-CCccceEeeccccccccccccCCCcccccCccccccCcccccccccccc
Q 002265 518 LDRLRSLLIYDRSSFNPSLNSSILSELFSK-LVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGI 596 (945)
Q Consensus 518 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i 596 (945)
+.+++.|.+.+.-. ..-+.. +.. +++|++|||++|.+... ..+. +.+..++++.+..+.|
T Consensus 24 ~~~l~~L~l~g~i~------~~~~~~-l~~~l~~L~~LdLs~n~i~~~----------~~~~--~~~~~~~~~~~~~~~I 84 (329)
T 3sb4_A 24 ANSITHLTLTGKLN------AEDFRH-LRDEFPSLKVLDISNAEIKMY----------SGKA--GTYPNGKFYIYMANFV 84 (329)
T ss_dssp HHHCSEEEEEEEEC------HHHHHH-HHHSCTTCCEEEEEEEEECCE----------EESS--SSSGGGCCEEECTTEE
T ss_pred hCceeEEEEecccc------HHHHHH-HHHhhccCeEEecCcceeEEe----------cCcc--cccccccccccccccc
Confidence 56788888887531 111222 333 78899999665553200 1111 1222244555554433
Q ss_pred cccChhhhc--------CCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCc-cCCCCCCCCCcCCccccc
Q 002265 597 EILPETLCE--------LYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMP-IGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 597 ~~lp~~i~~--------L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~~~~~~ 666 (945)
. +..+.+ +.+|+.|+|.. . +..+++ .|..+++|+.|++.++. +..++ ..+..+.++..+......
T Consensus 85 ~--~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~ 159 (329)
T 3sb4_A 85 P--AYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSD 159 (329)
T ss_dssp C--TTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTH
T ss_pred C--HHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchh
Confidence 2 234556 89999999987 3 777776 46788999999998773 33443 334444444443321100
Q ss_pred CCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCC-eEEEEeccccCCCCCccccCchhHHHHHhc
Q 002265 667 GGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLL-RLHLEFGRVVDGEGEEGRRKNEKDKQLLEA 745 (945)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 745 (945)
. ...+.. .....+.++..|+ .+.+.... .........
T Consensus 160 ~---------~~~~~~--------------------i~~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~ 197 (329)
T 3sb4_A 160 A---------YRFKNR--------------------WEHFAFIEGEPLETTIQVGAMG-------------KLEDEIMKA 197 (329)
T ss_dssp H---------HHTSTT--------------------TTTSCEEESCCCEEEEEECTTC-------------CHHHHHHHT
T ss_pred h---------hhcccc--------------------ccccccccccccceeEEecCCC-------------cHHHHHhhc
Confidence 0 000000 0011233344443 22222111 011222223
Q ss_pred CCCCCCccEEEEEeeCCCCCCccc-ccccCCcEEEEecCCCCCcCCC--CCccc-cceEeeccccCceEeCccccCCCCC
Q 002265 746 LQPPLNLEEFGIVFYGGNIFPKWL-TSLTNLRELRLVSCVDCEHLPP--LGKLA-LEKLELGNLKSVKRLGNEFLGIEES 821 (945)
Q Consensus 746 l~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~l~~--l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~ 821 (945)
-..+.++..+.+.+.....-...+ ..+++|+.|+|.+|. +..+|. +..++ |+.|.+.+. ++.++...
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a------ 268 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV------ 268 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTT------
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHH------
Confidence 334567777777765321111111 247899999999875 556654 66777 899988763 67775532
Q ss_pred CCCCCCCCCCCCcCcCCCccc-eeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCC
Q 002265 822 SEDDPSSSSSSSSVTAFPKLK-SLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLP 900 (945)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp 900 (945)
+.++++|+ .+.+.+ +++.+.. ..+.++++|+.|.+.++ .++.++
T Consensus 269 -------------F~~~~~L~~~l~l~~--~l~~I~~-------------------~aF~~c~~L~~l~l~~n-~i~~I~ 313 (329)
T 3sb4_A 269 -------------FSNCGRLAGTLELPA--SVTAIEF-------------------GAFMGCDNLRYVLATGD-KITTLG 313 (329)
T ss_dssp -------------TTTCTTCCEEEEECT--TCCEECT-------------------TTTTTCTTEEEEEECSS-CCCEEC
T ss_pred -------------hhCChhccEEEEEcc--cceEEch-------------------hhhhCCccCCEEEeCCC-ccCccc
Confidence 34778888 888876 4444321 25666788999999776 788887
Q ss_pred c-CCCCCCCccEEE
Q 002265 901 D-YLLRTTTLQKLT 913 (945)
Q Consensus 901 ~-~~~~l~~L~~L~ 913 (945)
. .+.++++|+.|+
T Consensus 314 ~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCCCEEE
T ss_pred hhhhcCCcchhhhc
Confidence 5 566788888875
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=1e-07 Score=106.07 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=139.8
Q ss_pred CCceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc------c-------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV------N------------------- 234 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~------~------------------- 234 (945)
+..|+||+++++.+.+++..... ....+.+.|+|++|+||||||+.+++.... .
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 36799999999999998864311 234568999999999999999988864310 0
Q ss_pred ----------------------------CCceEEEEEcCccCCC----cCChhhHHhhccC-CCCCcEEEEEcCchHHHH
Q 002265 235 ----------------------------SRKKIFLVLDDVWDGN----CNKWEPFFRCLKN-DLHGGKILVTTRNVSVAR 281 (945)
Q Consensus 235 ----------------------------~~~~~LlvlDdv~~~~----~~~~~~l~~~~~~-~~~gs~iiiTtr~~~~~~ 281 (945)
.+++.+||||+++... .+.+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 0348899999996532 2223333333322 233556788887653221
Q ss_pred Hh-----cCCCceeeeCCCCChHHHHHHHHHHhccCC-CCcchHHHHHHHHHHHHHcC---CChhH-HHHHHHHhc----
Q 002265 282 MM-----GTTELDIISIEQLAEEECWSLFERLVFFDR-SSEDREKLESIGRKIARNCK---GLPLA-AKVIGNLLR---- 347 (945)
Q Consensus 282 ~~-----~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~---glPLa-i~~~~~~L~---- 347 (945)
.+ .......+.+.+++.++..+++...+.... ..... .+....+++.++ |.|.. +..+..+..
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 11 111114799999999999999988653111 11112 233455666665 88874 333322221
Q ss_pred -CC--CCHHHHHHHHhhhcccccccCccchhHHHhhccCCCCchHHHHHHhhhccCCC-C-ceechHHHHHHH--HHhcc
Q 002265 348 -SK--STVEEWESILESEMWEVEEIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPK-D-YNMDKHELIDLW--MAQDY 420 (945)
Q Consensus 348 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~k~cfl~~a~fp~-~-~~i~~~~Li~~w--~aeg~ 420 (945)
+. -+.+.+..++.... ...+.-++..++. ..+..+..++...+ + ..+...++.+.. +++.+
T Consensus 255 ~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPF--HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCH--HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 11 25566665554321 1235556677776 56666665653222 2 123333332221 11111
Q ss_pred -ccccccccHHHHHHHHHHHHHHccccccc
Q 002265 421 -LNAKANKEMETIGEEYFNILATRSFFQEF 449 (945)
Q Consensus 421 -~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 449 (945)
+.. . .......+++.|...+++...
T Consensus 323 g~~~---~-~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GVEA---V-TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TCCC---C-CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCC---C-CHHHHHHHHHHHHhCCCEEEE
Confidence 111 0 123456678999999998754
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.67 E-value=2.4e-08 Score=96.72 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=47.2
Q ss_pred cCCCccccc-CccccccCcccccccccccccccChh-hhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCC
Q 002265 568 LDPNSIREI-PKNVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGET 641 (945)
Q Consensus 568 l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~ 641 (945)
+++|.+..+ |..++.+.+|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 37 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 555555555 34566677777777777777766654 3667777777777765 5566553 566777777777766
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.2e-07 Score=102.90 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=107.5
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
.+++|++..++.+..++... ....+.++|++|+||||+|+.+++.....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKE 99 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHH
Confidence 46999999999999988653 23348999999999999999887652100
Q ss_pred -------C-CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHH
Q 002265 235 -------S-RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 235 -------~-~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
. +++.++|+|+++......++.+...+.....+.++|+||.... +...+... ...+.+.+++.++..+++
T Consensus 100 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr-~~~~~~~~l~~~~~~~~l 178 (327)
T 1iqp_A 100 FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR-CAIFRFRPLRDEDIAKRL 178 (327)
T ss_dssp HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT-EEEEECCCCCHHHHHHHH
T ss_pred HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh-CcEEEecCCCHHHHHHHH
Confidence 0 3578999999987655556667777766666788888887643 11111111 237899999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHH
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIGN 344 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 344 (945)
...+........ .+....+++.++|.|..+..+..
T Consensus 179 ~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 179 RYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 887643222122 23456788889999886554433
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=3.3e-07 Score=101.44 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=106.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|++..++.+...+.... ..+.+.|+|+.|+||||+|+.+++....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCE
T ss_pred hhccCcHHHHHHHHHHHHhCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceE
Confidence 459999999999999886432 2347889999999999999988754311
Q ss_pred -------c-----------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 234 -------N-----------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 234 -------~-----------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
. .+++.++|+||+.......++.+...+.....+..+|++|.... +...+... .
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr-~ 170 (373)
T 1jr3_A 92 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-C 170 (373)
T ss_dssp EEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT-S
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh-e
Confidence 0 04567999999987655556667777766556777777776432 22222222 3
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVIG 343 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 343 (945)
..+++.+++.++..+++...+........ .+....+++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 48999999999999999876532221112 2346678899999998776543
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=2.3e-07 Score=101.61 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=64.6
Q ss_pred cCCC-cccccCccccccCccccccccc-ccccccC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCC
Q 002265 568 LDPN-SIREIPKNVRKLIHLKYLNLSE-LGIEILP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYS 643 (945)
Q Consensus 568 l~~~-~l~~lp~~i~~L~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 643 (945)
.+++ .+..+|. ++.+.+|++|+|++ |.|..+| ..|++|.+|++|+|++|. +..+|+ .|.+|++|++|+|++| .
T Consensus 15 ~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 15 CTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp CCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-C
T ss_pred cCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-c
Confidence 5555 6677777 77777777777775 7777666 457777777777777776 555543 5677777777777777 5
Q ss_pred CccCccCCCCCCCCCcCCccccc
Q 002265 644 LKYMPIGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 644 l~~lp~~i~~L~~L~~L~~~~~~ 666 (945)
+..+|..+.....|+.|++..+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 56666554433337777665554
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.34 E-value=2.1e-06 Score=92.60 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=102.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc-----c---------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-----N--------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~-----~--------------------- 234 (945)
.+++|++..++.+.+++... ....+.++|++|+|||++|+.+++.... .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-----CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC-----CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHH
Confidence 45899999999998887642 2233899999999999999988765200 0
Q ss_pred --------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHH
Q 002265 235 --------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 235 --------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
.+++.++|+|++........+.+...+.....+.++|+||.... +...+... ...+.+.+++.++..+++
T Consensus 92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr-~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR-CAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp HHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT-CEEEECCCCCHHHHHHHH
T ss_pred HHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh-CeEEEecCCCHHHHHHHH
Confidence 03478999999977554445556666655556778888876543 22222222 248999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHH
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKV 341 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 341 (945)
...+........ .+....+++.++|.+..+..
T Consensus 171 ~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 171 LEICEKEGVKIT----EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp HHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 877643222222 23456778888998875543
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=1.6e-06 Score=89.30 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=90.9
Q ss_pred Cceecc---hhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 181 GEVCGR---VDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 181 ~~~vgr---~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
.+|+|. +..++.+..+.... ..+.+.|+|++|+||||+|+.+++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGL 102 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhc
Confidence 346663 34455555555431 345789999999999999999876543211
Q ss_pred CceEEEEEcCccCCCcCC--hhhHHhhccCC-CCC-cEEEEEcCc---------hHHHHHhcCCCceeeeCCCCChHHHH
Q 002265 236 RKKIFLVLDDVWDGNCNK--WEPFFRCLKND-LHG-GKILVTTRN---------VSVARMMGTTELDIISIEQLAEEECW 302 (945)
Q Consensus 236 ~~~~LlvlDdv~~~~~~~--~~~l~~~~~~~-~~g-s~iiiTtr~---------~~~~~~~~~~~~~~~~l~~l~~~~~~ 302 (945)
.+..+||+||++...... .+.+...+... ..+ .+||+||+. ..+...+.. ...+.+.+++.++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~--~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW--GLTYQLQPMMDDEKL 180 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH--SEEEECCCCCGGGHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc--CceEEeCCCCHHHHH
Confidence 346789999997654332 33344333211 112 247777763 222222222 148999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 303 SLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 303 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
+++...+........ .+....+++.++|.+-.+..+
T Consensus 181 ~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 181 AALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHH
Confidence 999887642221112 334567888888877655443
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.32 E-value=1.8e-06 Score=93.87 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=101.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------CceE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------RKKI 239 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------~~~~ 239 (945)
.+++|++..++.+..++............|.|+|++|+|||++|+++++.....+ .+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGD 108 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTC
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCC
Confidence 5699999999999888875321122345689999999999999999987643321 4567
Q ss_pred EEEEcCccCCCcCChhhHHhhccCCC------------------CCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKNDL------------------HGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~~~------------------~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
+|+||++..........+...+.... ++..+|.||.... +...+...-...+.+.+++.++
T Consensus 109 vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 109 ILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSE 188 (338)
T ss_dssp EEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHH
Confidence 89999998765444445555444321 1245666655432 2111211212489999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHH
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKV 341 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 341 (945)
..+++...+........ .+....+++.+.|.|-.+..
T Consensus 189 ~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 189 LALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp HHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHHH
Confidence 99999877643222111 33456778888998854443
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.24 E-value=1.4e-06 Score=95.35 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=47.4
Q ss_pred hccCCccceEeeccccccccccccCC-CcccccC-ccccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCcc
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDP-NSIREIP-KNVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLR 621 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~-~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~ 621 (945)
+..+++|+.|+ |++ |.+..+| ..|+.|.+|++|+|++|.|..+|+ .|++|++|++|+|++|. +.
T Consensus 27 l~~~~~L~~L~------------l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 93 (347)
T 2ifg_A 27 LPGAENLTELY------------IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LE 93 (347)
T ss_dssp SCSCSCCSEEE------------CCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CS
T ss_pred CCCCCCeeEEE------------ccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cc
Confidence 55555666666 443 4455555 345566666666666666664433 45666666666666655 55
Q ss_pred ccCcccccccCCCeeecCCC
Q 002265 622 ELPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 622 ~lP~~i~~L~~L~~L~l~~~ 641 (945)
.+|..+.....|++|++.+|
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSS
T ss_pred eeCHHHcccCCceEEEeeCC
Confidence 55554443333666666655
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=8.9e-05 Score=82.12 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=56.9
Q ss_pred HHHhccCCccceEeeccccccccccccCCCcccccCcc-ccccCcccccccccccccccC-hhhhcCCcccEEEecCCCC
Q 002265 542 SELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKN-VRKLIHLKYLNLSELGIEILP-ETLCELYNLQKLDIRRCRN 619 (945)
Q Consensus 542 ~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 619 (945)
...|.++ +|+.+. +..+ +..|+.. |.+ .+|+.+.+.. .+..++ ..+.+|.+|+.+++.+|.
T Consensus 129 ~~aF~~~-~L~~i~------------l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~- 191 (401)
T 4fdw_A 129 KDAFRNS-QIAKVV------------LNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK- 191 (401)
T ss_dssp TTTTTTC-CCSEEE------------CCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-
T ss_pred HhhcccC-CccEEE------------eCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-
Confidence 3445554 577776 4332 4455432 333 3577777765 455444 456777777777777665
Q ss_pred ccccCcccccccCCCeeecCCCCCCccCcc-CCCCCCCCCcCC
Q 002265 620 LRELPAGIGKLMNMRSLLNGETYSLKYMPI-GISKLTSLRTLD 661 (945)
Q Consensus 620 l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 661 (945)
+..+|.......+|+.+.+..+ +..++. .+..+++|+.+.
T Consensus 192 l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 192 ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 6677766555677777776533 344432 244444444443
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=1.7e-06 Score=85.50 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=76.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc--------c------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------N------------------ 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------~------------------ 234 (945)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++.... .
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 96 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSH
T ss_pred cccccchHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcc
Confidence 46899999999999998652 2345789999999999999988776421 0
Q ss_pred ----------------CCceEEEEEcCccCCC--------cCChhhHHhhccCCCCCcEEEEEcCchHHHH------Hhc
Q 002265 235 ----------------SRKKIFLVLDDVWDGN--------CNKWEPFFRCLKNDLHGGKILVTTRNVSVAR------MMG 284 (945)
Q Consensus 235 ----------------~~~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~------~~~ 284 (945)
.++..+||+||++... ......+...+.. .+..+|.||....... .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~ 174 (195)
T 1jbk_A 97 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALE 174 (195)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHHHH
Confidence 0446799999997642 1123333333322 2445777776654321 121
Q ss_pred CCCceeeeCCCCChHHHHHHH
Q 002265 285 TTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf 305 (945)
.. ...+.+.+++.++..+++
T Consensus 175 ~r-~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 175 RR-FQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TT-EEEEECCCCCHHHHHTTC
T ss_pred HH-hceeecCCCCHHHHHHHh
Confidence 11 226888999988876553
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.13 E-value=9e-06 Score=91.01 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=94.4
Q ss_pred CceecchhHH---HHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 181 GEVCGRVDEK---NELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~---~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
.+++|.+..+ ..+...+... ....+.|||++|+||||+|+.+++.....+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-----~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~ 100 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-----HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQ 100 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-----CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-----CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 4688988877 6666666542 346799999999999999999987654322
Q ss_pred ----CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEE-EEcCchH--HHHHhcCCCceeeeCCCCChHHHHHHHHHH
Q 002265 236 ----RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKIL-VTTRNVS--VARMMGTTELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 236 ----~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~ii-iTtr~~~--~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
+++.+|++|++........+.+...+..+ ...+| .||.+.. +...+-.. ..++.+.+++.++..+++.+.
T Consensus 101 ~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR-~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 101 NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSR-ARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp HHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTT-EEEEECCCCCHHHHHHHHHHH
T ss_pred hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCc-eeEEeeCCcCHHHHHHHHHHH
Confidence 46789999999876555556666666542 22333 3555532 22222222 347899999999999999887
Q ss_pred hccCCCC---cchHHHHHHHHHHHHHcCCChhHHH
Q 002265 309 VFFDRSS---EDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 309 ~~~~~~~---~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
+...... ....-..+....+++.++|-+-.+.
T Consensus 178 l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 178 MEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 6431100 0011123455667777888765444
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=7e-06 Score=89.87 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=101.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc------C-------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN------S------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~------~------------------- 235 (945)
.+++|++..++.+..++.... ...+.++|++|+||||+|+.+++..... .
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVK 111 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-----CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC-----CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHH
Confidence 468999999999999886432 2238999999999999999887653210 0
Q ss_pred --------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCC
Q 002265 236 --------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIE 294 (945)
Q Consensus 236 --------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~ 294 (945)
.+.-+|++|++..........+...+.......++|++|.... +...+... ...+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR-~~~i~~~ 190 (353)
T 1sxj_D 112 NFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ-CSKFRFK 190 (353)
T ss_dssp HHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH-SEEEECC
T ss_pred HHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc-CceEEeC
Confidence 1335899999976654445556666665555677777775432 22221111 2378999
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 295 QLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 295 ~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
+++.++..+.+...+........ .+....|++.++|.|-.+..+
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999887643222122 345677888999988764433
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.09 E-value=0.00011 Score=81.45 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=62.8
Q ss_pred CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc-cccccCcccccc
Q 002265 512 PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLN 590 (945)
Q Consensus 512 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~ 590 (945)
..+|.++++|+.+.+...- ..+-..+|.++.+|+.++ +.. .+..++. .+..+..|+.+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~i-------~~I~~~aF~~c~~L~~i~------------lp~-~l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTV-------REIGEFAFENCSKLEIIN------------IPD-SVKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp TTTTTTCTTEEEEECCTTC-------CEECTTTTTTCTTCCEEC------------CCT-TCCEECTTTTTTCTTCCCCC
T ss_pred HHHhhCCCCceEEEeCCCc-------cCcchhHhhCCCCCcEEE------------eCC-CceEccchhhcccccchhhc
Confidence 3467788889988885432 233455688888898888 432 2344433 355566666666
Q ss_pred cccccccccChhhhcCCcccEEEecCCCCccccC-cccccccCCCeeecCCCCCCccCcc-CCCCCCCCCcCCc
Q 002265 591 LSELGIEILPETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRSLLNGETYSLKYMPI-GISKLTSLRTLDR 662 (945)
Q Consensus 591 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~ 662 (945)
+..+-...-...+.++..+........ ..+. ..+..+.+|+.+.+.++ ...++. .+..+.+|+.+.+
T Consensus 124 ~p~~l~~i~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 124 LPLMLKSIGVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp CCTTCCEECTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred ccCceeeecceeeecccccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEc
Confidence 554321111223333333333222221 1111 23455566666665433 222322 2445555555544
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.07 E-value=1.3e-05 Score=84.87 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=92.7
Q ss_pred CceecchhHHHHHHHHHhccccC--------CCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ--------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~--------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.+++|.++.++.+.+.+...... -...+-+.|+|++|+|||+||+++++......
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~ 96 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHH
Confidence 56999999999998877432000 02344689999999999999999987653221
Q ss_pred ------------CceEEEEEcCccCC-----------CcCChhhHHhhc---c--CCCCCcEEEEEcCchHHHH-HhcC-
Q 002265 236 ------------RKKIFLVLDDVWDG-----------NCNKWEPFFRCL---K--NDLHGGKILVTTRNVSVAR-MMGT- 285 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~-----------~~~~~~~l~~~~---~--~~~~gs~iiiTtr~~~~~~-~~~~- 285 (945)
....+|+||++... .......+...+ . ....+..||.||....... ....
T Consensus 97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~ 176 (285)
T 3h4m_A 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRP 176 (285)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHST
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCC
Confidence 34579999999542 001112222222 1 1234567888887543221 1111
Q ss_pred -CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHH
Q 002265 286 -TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAK 340 (945)
Q Consensus 286 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 340 (945)
.-...+.+...+.++..++|...+..... ..... ...++..+.| .|-.+.
T Consensus 177 ~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 177 GRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 11237899999999999999887643221 11112 3456666666 443443
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.06 E-value=1.2e-05 Score=89.09 Aligned_cols=242 Identities=10% Similarity=0.054 Sum_probs=135.9
Q ss_pred ccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccC-ccccccCccccccc
Q 002265 513 MSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIP-KNVRKLIHLKYLNL 591 (945)
Q Consensus 513 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp-~~i~~L~~L~~L~L 591 (945)
.+|.++ +|+.+.+..+- ..+....|.++ .|+.+. +.. .+..++ ..|..+.+|+.+++
T Consensus 130 ~aF~~~-~L~~i~l~~~i-------~~I~~~aF~~~-~L~~i~------------lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEGL-------KSIGDMAFFNS-TVQEIV------------FPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp TTTTTC-CCSEEECCTTC-------CEECTTTTTTC-CCCEEE------------CCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred hhcccC-CccEEEeCCCc-------cEECHHhcCCC-CceEEE------------eCC-CccEehHHHhhCcccCCeeec
Confidence 345554 68888775542 13334446553 577777 443 455554 34677788888888
Q ss_pred ccccccccChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCccC-CCCCCCCCcCCcccccCCc
Q 002265 592 SELGIEILPETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMPIG-ISKLTSLRTLDRFVVGGGV 669 (945)
Q Consensus 592 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~ 669 (945)
++|.++.+|...-...+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++.. +.+ .+|+.+.+...-..-
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTCCEE
T ss_pred CCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCccEE
Confidence 88888877766555678888888643 566654 4567778888887654 4455443 333 567766653221111
Q ss_pred CCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCC
Q 002265 670 DGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPP 749 (945)
Q Consensus 670 ~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 749 (945)
....+..+.+|+.+.+.++... ...........+.+|++|+.+.+..+ +...+ ...+..+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~-----~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~--------------~~aF~~c 322 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFN-----DDPEAMIHPYCLEGCPKLARFEIPES-IRILG--------------QGLLGGN 322 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCC-----CCTTCEECTTTTTTCTTCCEECCCTT-CCEEC--------------TTTTTTC
T ss_pred ChhHhhCCCCCCEEEeCCcccc-----CCcccEECHHHhhCCccCCeEEeCCc-eEEEh--------------hhhhcCC
Confidence 1233445666666655432110 00001122345677888888877632 21110 1235566
Q ss_pred CCccEEEEEeeCCCCC-CcccccccCCcEEEEecCCCCCcCCC--CCccc--cceEeecc
Q 002265 750 LNLEEFGIVFYGGNIF-PKWLTSLTNLRELRLVSCVDCEHLPP--LGKLA--LEKLELGN 804 (945)
Q Consensus 750 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~--L~~L~l~~ 804 (945)
.+|+.+.|..+ ...+ +..+..+ +|+.|++.++.... ++. +..+| +..|.+..
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECG
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCH
Confidence 78888888543 2333 3456677 89999998874322 221 33444 66666643
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=3.3e-07 Score=100.68 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred cEEEEEeecCCCCCC-----Ccccc-CCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCC
Q 002265 497 KVRHLGLNFEGGDSF-----PMSIC-GLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDP 570 (945)
Q Consensus 497 ~~r~l~l~~~~~~~~-----~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~ 570 (945)
.++.+.+..+.+... ...+. ..++|+.|++++|... ......+...+++|+.|++++|.+. .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~L~~L~Ls~n~l~-------~ 140 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNSLG-------P 140 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-----HHHHHHTHHHHHTEEEEECCSSCCC-------H
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-----HHHHHHHHHHHHhccHhhcCCCCCC-------H
Confidence 355666666655421 11222 2367888888777521 1112333344557788884444321 1
Q ss_pred CcccccCccc-cccCccccccccccccc-----ccChhhhcCCcccEEEecCCCCcc-----ccCcccccccCCCeeecC
Q 002265 571 NSIREIPKNV-RKLIHLKYLNLSELGIE-----ILPETLCELYNLQKLDIRRCRNLR-----ELPAGIGKLMNMRSLLNG 639 (945)
Q Consensus 571 ~~l~~lp~~i-~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~-----~lP~~i~~L~~L~~L~l~ 639 (945)
.....+...+ ....+|++|+|++|.|. .++..+..+++|++|||++|. +. .++..+...++|++|+++
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECC
Confidence 1112222222 23467888888888765 355566777788888888776 43 234556667778888887
Q ss_pred CCCCCc----cCccCCCCCCCCCcCCcccccC
Q 002265 640 ETYSLK----YMPIGISKLTSLRTLDRFVVGG 667 (945)
Q Consensus 640 ~~~~l~----~lp~~i~~L~~L~~L~~~~~~~ 667 (945)
+|.... .++..+...++|++|++..|..
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 773221 2223344556666666665543
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=9.5e-06 Score=93.30 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=99.6
Q ss_pred CceecchhHHHHHHHHHhcccc------------CCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE------------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~------------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------- 234 (945)
.+++|++..++++.+++..... +.+..+.+.|+|++|+||||+|+.+++.....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 4699999999999999865210 00134689999999999999999988643110
Q ss_pred ---------------------------CCceEEEEEcCccCCCcCC---hhhHHhhccCCCCCcEEEEEcCchH--HHHH
Q 002265 235 ---------------------------SRKKIFLVLDDVWDGNCNK---WEPFFRCLKNDLHGGKILVTTRNVS--VARM 282 (945)
Q Consensus 235 ---------------------------~~~~~LlvlDdv~~~~~~~---~~~l~~~~~~~~~gs~iiiTtr~~~--~~~~ 282 (945)
..++.+|++|++....... +..+...+... +..||+++.+.. ....
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~ 196 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRP 196 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGG
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchh
Confidence 1356899999997643222 24444444332 334555554422 1112
Q ss_pred hcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHHHHHHH
Q 002265 283 MGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAKVIGNL 345 (945)
Q Consensus 283 ~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~ 345 (945)
+... ...+.+.+++.++..+.+...+........+ +....|++.++| ++-|+..+..+
T Consensus 197 l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 197 FDRV-CLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp GTTT-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred hHhc-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2221 3479999999999999988766432221222 235678888888 66666665433
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.03 E-value=2.8e-05 Score=80.92 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=88.3
Q ss_pred CceecchhHHHHHHHHHhc---ccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCE---SSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~---~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+++.. ... +....+-+.|+|++|+|||++|+++++......
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHH
Confidence 5689999888777665432 110 002334578999999999999999987543211
Q ss_pred -----------CceEEEEEcCccCCC------------cCChh---hHHhhccC--CCCCcEEEEEcCchHHH-HHhcC-
Q 002265 236 -----------RKKIFLVLDDVWDGN------------CNKWE---PFFRCLKN--DLHGGKILVTTRNVSVA-RMMGT- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~------------~~~~~---~l~~~~~~--~~~gs~iiiTtr~~~~~-~~~~~- 285 (945)
....+|++|+++... ..... .+...+.. ...+..||.||...... .....
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~ 165 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRP 165 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGST
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcC
Confidence 236899999997531 11111 22222222 12355677777654322 11111
Q ss_pred -CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh
Q 002265 286 -TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL 337 (945)
Q Consensus 286 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 337 (945)
.-...+.+...+.++..+++...+...... ... ......+++.+.|.+-
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~--~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSS--TFYSQRLAELTPGFSG 215 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTH--HHHHHHHHHTCTTCCH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cch--hhHHHHHHHHCCCCCH
Confidence 112478899999999999998876432221 111 1234677888887653
No 174
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.01 E-value=4.3e-05 Score=82.15 Aligned_cols=159 Identities=19% Similarity=0.085 Sum_probs=95.3
Q ss_pred CceecchhHHHHHHHHHhcc-------ccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCES-------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~-------~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+.+... .......+-|.++|++|+|||+||+++++.....+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 97 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 97 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHH
Confidence 56899999999998877310 01112245689999999999999999987643221
Q ss_pred -----------CceEEEEEcCccCCCcCC-----------hhhHHhhcc---CCCCCcEEEEEcCchHHH-HHhcCCCce
Q 002265 236 -----------RKKIFLVLDDVWDGNCNK-----------WEPFFRCLK---NDLHGGKILVTTRNVSVA-RMMGTTELD 289 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~~-----------~~~l~~~~~---~~~~gs~iiiTtr~~~~~-~~~~~~~~~ 289 (945)
.+..+|+||++....... ...+...+. ....+..||.||...... ..+...-..
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~ 177 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 177 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCE
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCe
Confidence 345799999997532110 122332222 233455666677653221 111111123
Q ss_pred eeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHHHHH
Q 002265 290 IISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAKVIG 343 (945)
Q Consensus 290 ~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 343 (945)
.+.+...+.++-.++|..++.......... ....+++.+.| .+-.|..+.
T Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 178 RIYIPLPDLAARTTMFEINVGDTPCVLTKE----DYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCCCCCHH----HHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHcCCCCHHHHHHHH
Confidence 788999999999999998875322211222 34567788877 344444443
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.00 E-value=1.2e-05 Score=86.81 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=96.9
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------- 235 (945)
.+++|.+..++.+.+++.... ...++-+.|++|+|||++|+.+.+......
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~----~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK----IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAAS 101 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC----CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC----CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcc
Confidence 579999999999999987432 345788889999999999999987643211
Q ss_pred --CceEEEEEcCccCCC-cCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHH------
Q 002265 236 --RKKIFLVLDDVWDGN-CNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLF------ 305 (945)
Q Consensus 236 --~~~~LlvlDdv~~~~-~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf------ 305 (945)
++..++++|++.... .+..+.+...+.....+.++|+||.... +...+... ...+++.+++.++-.+++
T Consensus 102 ~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-~~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-CRVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH-SEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh-CcEEEeCCCCHHHHHHHHHHHHHH
Confidence 378899999997654 3444555555544345668888887643 11111111 237999999988743332
Q ss_pred -HHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHHHHH
Q 002265 306 -ERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVIGNL 345 (945)
Q Consensus 306 -~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~ 345 (945)
...+......... .+....+++.++|-+- |+..+-.+
T Consensus 181 l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 181 LTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2222111111111 1456667788877554 44444333
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.96 E-value=7.6e-05 Score=78.14 Aligned_cols=154 Identities=20% Similarity=0.130 Sum_probs=88.1
Q ss_pred CceecchhHHHHHHH-------HHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLS-------KLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~-------~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
..++|....++++.. .+.... ....+.+.|+|++|+|||++|+++++.....+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~--~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS--SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 457788777666665 232111 23567899999999999999999887532111
Q ss_pred ------------CceEEEEEcCccCC------CcC---C-hhhHHhhccC---CCCCcEEEEEcCchHHHHHh--cCCCc
Q 002265 236 ------------RKKIFLVLDDVWDG------NCN---K-WEPFFRCLKN---DLHGGKILVTTRNVSVARMM--GTTEL 288 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~------~~~---~-~~~l~~~~~~---~~~gs~iiiTtr~~~~~~~~--~~~~~ 288 (945)
.+..+|+||++... ... . ...+...+.. ......||.||......... ...-.
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~ 190 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS 190 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccc
Confidence 34789999998542 111 1 1222222221 22234567778776554432 11113
Q ss_pred eeeeCCCCCh-HHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC------ChhHHHHHHHH
Q 002265 289 DIISIEQLAE-EECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG------LPLAAKVIGNL 345 (945)
Q Consensus 289 ~~~~l~~l~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~~~~ 345 (945)
..+.+.+++. ++..+++.... . .. .+....+++.+.| ++-++..+-.+
T Consensus 191 ~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 191 TTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp EEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred eEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 4788999988 66666665432 1 12 2235567777776 44444444433
No 177
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.4e-05 Score=81.44 Aligned_cols=162 Identities=9% Similarity=0.025 Sum_probs=105.4
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc----------c-----------------
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV----------N----------------- 234 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~----------~----------------- 234 (945)
.+.||+++++++...|...-. +.....+-|+|++|+|||++|+.+++.... .
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~-~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM-SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 388999999999988875432 234567899999999999999998776421 0
Q ss_pred ------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCC-CCCc--EEEEEcCchH---
Q 002265 235 ------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKND-LHGG--KILVTTRNVS--- 278 (945)
Q Consensus 235 ------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~gs--~iiiTtr~~~--- 278 (945)
.++.+++|||+++... .-+.+...+.+. ...+ .||.++.+.+
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 0357899999997653 334455444321 1223 3444444321
Q ss_pred --HHHHh-cCCCceeeeCCCCChHHHHHHHHHHhccCCC-----------------------------------CcchHH
Q 002265 279 --VARMM-GTTELDIISIEQLAEEECWSLFERLVFFDRS-----------------------------------SEDREK 320 (945)
Q Consensus 279 --~~~~~-~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~-----------------------------------~~~~~~ 320 (945)
+.... .......+.+.+++.+|-.+++.+++-.... ...+..
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a 257 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKI 257 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHH
Confidence 11111 1111237999999999999999887643211 014566
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHh
Q 002265 321 LESIGRKIARNCKGLPLAAKVIGNLL 346 (945)
Q Consensus 321 ~~~~~~~i~~~c~glPLai~~~~~~L 346 (945)
++-+|++++...|-.-.|+.++-.+.
T Consensus 258 i~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 258 TQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 77788888888888888888775554
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.94 E-value=2e-05 Score=84.45 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=82.2
Q ss_pred ceecchhHHHHHHHHHhccc----------cCCCCeEEEEEEecCCCcHHHHHHHHhcccccc-------C---------
Q 002265 182 EVCGRVDEKNELLSKLCESS----------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------S--------- 235 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~----------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------~--------- 235 (945)
+++|.+..++.+.+.+.... ........+.|+|++|+|||++|+.+++..... .
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 57888888888776654210 001234578999999999999998776654210 0
Q ss_pred -----------------CceEEEEEcCccCC---------CcCChhhHHhhccCCCCCcEEEEEcCchHHHHH------h
Q 002265 236 -----------------RKKIFLVLDDVWDG---------NCNKWEPFFRCLKNDLHGGKILVTTRNVSVARM------M 283 (945)
Q Consensus 236 -----------------~~~~LlvlDdv~~~---------~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~------~ 283 (945)
.+.-+|++|++... .......+...+.....+..||.||........ +
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 12348999999743 222334555556555566788888865432111 1
Q ss_pred cCCCceeeeCCCCChHHHHHHHHHHhc
Q 002265 284 GTTELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 284 ~~~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
...-...+.+.+++.++-.+++...+.
T Consensus 192 ~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 111124799999999999999988764
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.92 E-value=5e-05 Score=83.57 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=90.3
Q ss_pred CceecchhHHHHH---HHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------
Q 002265 181 GEVCGRVDEKNEL---LSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l---~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------------- 235 (945)
.+++|++..++.+ ...+.... ...+.+.|+|++|+|||++|+.+++......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK---IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC---CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHH
Confidence 4799999887664 44443321 1235799999999999999999886543110
Q ss_pred ---------------------------------------------------------------Cc----eEEEEEcCccC
Q 002265 236 ---------------------------------------------------------------RK----KIFLVLDDVWD 248 (945)
Q Consensus 236 ---------------------------------------------------------------~~----~~LlvlDdv~~ 248 (945)
++ ..+|++|++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 11 23899999977
Q ss_pred CCcCChhhHHhhccCCCCCcEEEEEcC-------------chHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCC
Q 002265 249 GNCNKWEPFFRCLKNDLHGGKILVTTR-------------NVSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSS 315 (945)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~gs~iiiTtr-------------~~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~ 315 (945)
........+...+...... .++++|. ...+...+... ...+.+.+++.++..+++...+......
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR-~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR-LLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT-EEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh-ccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6544455555555444333 3444443 11111111111 2368999999999999998876432222
Q ss_pred cchHHHHHHHHHHHHHcC-CChhHH
Q 002265 316 EDREKLESIGRKIARNCK-GLPLAA 339 (945)
Q Consensus 316 ~~~~~~~~~~~~i~~~c~-glPLai 339 (945)
.. .+....+++.+. |.|-.+
T Consensus 279 ~~----~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 279 MS----EDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp BC----HHHHHHHHHHHHHSCHHHH
T ss_pred CC----HHHHHHHHHHhcCCCHHHH
Confidence 22 234566777776 655443
No 180
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.91 E-value=2e-06 Score=94.53 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=94.5
Q ss_pred CcEEEEEeecCCCCCC--CccccCCCceeEEEeccCCCCCCCchhhhhHHHh-ccCCccceEeeccccccccccccCCCc
Q 002265 496 VKVRHLGLNFEGGDSF--PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELF-SKLVCLRALVIRQSSLYFHPFHLDPNS 572 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~~~l~l~~~~ 572 (945)
..++.+.+..+.+... ......+++|+.|++++|..... -...+...+ ...+.|+.|++++|.+ ....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~--~~~~L~~~L~~~~~~L~~L~Ls~n~l-------~~~~ 171 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE--ACKDLRDLLLHDQCQITTLRLSNNPL-------TAAG 171 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH--HHHHHHHHHHSTTCCCCEEECCSSCC-------HHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH--HHHHHHHHHHhcCCccceeeCCCCCC-------ChHH
Confidence 4688999988876421 11122456899999999862110 011122233 3578899999555542 1222
Q ss_pred ccccCccccccCccccccccccccc-----ccChhhhcCCcccEEEecCCCCcc-----ccCcccccccCCCeeecCCCC
Q 002265 573 IREIPKNVRKLIHLKYLNLSELGIE-----ILPETLCELYNLQKLDIRRCRNLR-----ELPAGIGKLMNMRSLLNGETY 642 (945)
Q Consensus 573 l~~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~ 642 (945)
...++..+..+++|++|+|++|.|. .++..+...++|++|+|++|. +. .++..+...++|++|++++|.
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 2346666778899999999999986 356778888999999999997 53 345556678999999999994
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.90 E-value=9.1e-05 Score=80.60 Aligned_cols=158 Identities=19% Similarity=0.099 Sum_probs=93.0
Q ss_pred CceecchhHHHHHHHHHhcc---c----cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCES---S----EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~---~----~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+.+... . ......+-|.++|++|+|||+||+++++.....+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~ 130 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 130 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHH
Confidence 46899999999988876311 0 0011234588999999999999999987643221
Q ss_pred -----------CceEEEEEcCccCCCcCC-----------hhhHHhhcc---CCCCCcEEEEEcCchH-HHHHhcCCCce
Q 002265 236 -----------RKKIFLVLDDVWDGNCNK-----------WEPFFRCLK---NDLHGGKILVTTRNVS-VARMMGTTELD 289 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~~-----------~~~l~~~~~---~~~~gs~iiiTtr~~~-~~~~~~~~~~~ 289 (945)
.+..+|+||++....... ...+...+. ....+..||.||.... +...+...-..
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~ 210 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 210 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCE
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCE
Confidence 357899999997532110 122222222 1234555666666432 11111111124
Q ss_pred eeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHHHH
Q 002265 290 IISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAKVI 342 (945)
Q Consensus 290 ~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 342 (945)
.+.+...+.++..++|..++......... .....|++.+.| .+-.|..+
T Consensus 211 ~i~i~~P~~~~r~~il~~~l~~~~~~~~~----~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 211 RIYIPLPDLAARTTMFEINVGDTPSVLTK----EDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCCCH----HHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHcCCCCHHHHHHH
Confidence 78899999999999998876432211122 234567788887 44444444
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.82 E-value=9.3e-06 Score=75.93 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=62.6
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------------CceE
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------------RKKI 239 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------~~~~ 239 (945)
+++|+...+.++.+.+..... ...-|-|+|..|+|||++|+.+++...... ...-
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g 78 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGG 78 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTS
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCc
Confidence 578999999999888764322 223478999999999999999987632110 1234
Q ss_pred EEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCc
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRN 276 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~ 276 (945)
.|++|++..........+...+.......+||.||..
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 6889999876554555566666554556677777764
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.82 E-value=8.4e-05 Score=81.04 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=94.0
Q ss_pred CceecchhHHHHHHHHHhccc---c----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS---E----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~---~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+.+.... . .....+.|.|+|++|+|||+||+++++.....+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~ 163 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEK 163 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHH
Confidence 468999999999988774210 0 012345789999999999999999987643211
Q ss_pred -----------CceEEEEEcCccCCCc-----------CChhhHHhhccCC----CCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 236 -----------RKKIFLVLDDVWDGNC-----------NKWEPFFRCLKND----LHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~-----------~~~~~l~~~~~~~----~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
.+..+|+||++..... .....+...+... ..+..||.||.... +...+...-.
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~ 243 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc
Confidence 3468999999953210 0112233333221 23445665665432 2222211212
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCC-ChhHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKG-LPLAAKVIG 343 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 343 (945)
..+.+...+.++..+++...+........ ......+++.+.| .+-++..+.
T Consensus 244 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 37889999999999998877632221111 2345667888887 455555543
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=3.1e-05 Score=84.73 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=97.9
Q ss_pred CceecchhHHHHHHHHH-hccccCCCCeEEEEEEecCCCcHHHHHHHHhccc-c--------------------------
Q 002265 181 GEVCGRVDEKNELLSKL-CESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND-E-------------------------- 232 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l-~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~-~-------------------------- 232 (945)
.+++|.+...+.+..++ ... .... +.|+|+.|+||||+|+.++... .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 46899999888888877 321 1233 8999999999999998776621 0
Q ss_pred -------cc----------------------------------CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEE
Q 002265 233 -------VN----------------------------------SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKIL 271 (945)
Q Consensus 233 -------~~----------------------------------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~ii 271 (945)
.. ..+.-++|+|++...+......+...+.....+..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 00 0023389999997755444556666665555577788
Q ss_pred EEcCch-HHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHH
Q 002265 272 VTTRNV-SVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKV 341 (945)
Q Consensus 272 iTtr~~-~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 341 (945)
++|.+. .+...+... ...+++.+++.++..+.+...+......... .+....|++.++|-+-.+..
T Consensus 169 l~t~~~~~l~~~l~sR-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQ-CLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp EEESCSCSSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHH
T ss_pred EEeCCHHHHHHHHHhh-ceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHH
Confidence 777653 222222222 2489999999999999998776322211110 13456778888887754443
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.81 E-value=2.9e-05 Score=83.67 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=74.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc---C----------------------------CceEEEEEcCccCCCcC--C
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN---S----------------------------RKKIFLVLDDVWDGNCN--K 253 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~---~----------------------------~~~~LlvlDdv~~~~~~--~ 253 (945)
...+.|+|++|+||||||+.+++..... . .+.-+|++||+...... .
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 4578999999999999999998754211 0 22568999999764321 1
Q ss_pred hhhHHhhccC-CCCCcEEEEEcCc---------hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 002265 254 WEPFFRCLKN-DLHGGKILVTTRN---------VSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLES 323 (945)
Q Consensus 254 ~~~l~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~ 323 (945)
.+.+...+.. ...|..||+||.. ..+...+... .++.+.+ +.++..+++...+.......+ .+
T Consensus 117 ~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~ 189 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLELR----KE 189 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCCCC----HH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HH
Confidence 2233333321 1235578887753 2233333332 3799999 999999999887743222222 23
Q ss_pred HHHHHHHHcCCCh
Q 002265 324 IGRKIARNCKGLP 336 (945)
Q Consensus 324 ~~~~i~~~c~glP 336 (945)
....+++.+ |..
T Consensus 190 ~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 190 VIDYLLENT-KNV 201 (324)
T ss_dssp HHHHHHHHC-SSH
T ss_pred HHHHHHHhC-CCH
Confidence 345566667 544
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=2.5e-06 Score=92.82 Aligned_cols=176 Identities=19% Similarity=0.048 Sum_probs=98.3
Q ss_pred ccccCCCCCeEEEEeccccCCCCCccccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCcccccccCCcEEEEecCCCC
Q 002265 707 QLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPKWLTSLTNLRELRLVSCVDC 786 (945)
Q Consensus 707 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 786 (945)
.+..+++|++|.+........+ .++.. ...+...+..+|+|+.|.|+++.+..+|. + .+++|++|+|..|...
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~---is~~~--~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQE---ISWIE--QVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCC---GGGCB--CCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCC
T ss_pred hhhhcchhhheeecCcchhhcc---ccccc--ccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCC
Confidence 3455678888877654210000 00000 00122334567899999999986555665 3 3899999999987532
Q ss_pred C-cCCCC--Cccc-cceEeeccccCceEeCc-cccCCCCCCCCCCCCCCCCCcCcCCCccceeeccCccccccccccccc
Q 002265 787 E-HLPPL--GKLA-LEKLELGNLKSVKRLGN-EFLGIEESSEDDPSSSSSSSSVTAFPKLKSLEIKGLDELEEWNYRITR 861 (945)
Q Consensus 787 ~-~l~~l--~~l~-L~~L~l~~~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~ 861 (945)
. .+..+ ..+| |+.|+|+.+.+.. .+. ....+.. ......||+|++|.|.+|.--.......
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~l~~-----------~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-- 272 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNVFRP-----------LFSKDRFPNLKWLGIVDAEEQNVVVEMF-- 272 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGGTGG-----------GSCTTTCTTCCEEEEESCTTHHHHHHHH--
T ss_pred hHHHHHHHHccCCCCcEEEEecccccc-ccchhHHHHHH-----------HHhcCCCCCcCEEeCCCCCCchHHHHHH--
Confidence 2 11122 2578 9999885322110 000 0000000 0011368999999998865221111000
Q ss_pred cccccCCCcccccCCCCCCCCCccceEeeccCcCCCC-----CCcCCCCCCCccEEEEeCCcc
Q 002265 862 KENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKV-----LPDYLLRTTTLQKLTIWGCPL 919 (945)
Q Consensus 862 ~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~-----lp~~~~~l~~L~~L~l~~c~~ 919 (945)
..... +|+|+.|+|+.| .++. ++..+.++++|+.|++++|..
T Consensus 273 -a~a~~--------------~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 273 -LESDI--------------LPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp -HHCSS--------------GGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred -HhCcc--------------CCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 01123 345999999877 5654 455556789999999999863
No 187
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.00024 Score=78.77 Aligned_cols=232 Identities=13% Similarity=0.088 Sum_probs=120.1
Q ss_pred CcEEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccc
Q 002265 496 VKVRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIR 574 (945)
Q Consensus 496 ~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~ 574 (945)
..++.+.+.. .+..+ ..+|.++++|+.+.+..+- ..+....|..+..|+.+.+.. .+.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l-------~~I~~~aF~~c~~L~~i~~p~-------------~l~ 129 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSV-------KMIGRCTFSGCYALKSILLPL-------------MLK 129 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTC-------CEECTTTTTTCTTCCCCCCCT-------------TCC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCc-------eEccchhhcccccchhhcccC-------------cee
Confidence 4677777753 34444 4578899999999986542 133345678888888776322 122
Q ss_pred ccCc-cccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCCCCCCccCc-cCC
Q 002265 575 EIPK-NVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGETYSLKYMP-IGI 651 (945)
Q Consensus 575 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp-~~i 651 (945)
.+.. .+.....+........ ...-...+.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ +..++ ..+
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~-~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F 204 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGV-TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCF 204 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTT
T ss_pred eecceeeecccccccccCccc-cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhh
Confidence 2221 1222222222211111 1112345778888888888653 445554 4566788888887654 34443 346
Q ss_pred CCCCCCCcCCcccccCCcCCCCcccccccccCCCCCeEEEcCCCCCCChhhhhhcccccCCCCCeEEEEeccccCCCCCc
Q 002265 652 SKLTSLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHLDEAERSQLYNKKNLLRLHLEFGRVVDGEGEE 731 (945)
Q Consensus 652 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 731 (945)
.++..|+.+.+...... ..........|+.+.+... ........+..+..|+.+.+..+...-.
T Consensus 205 ~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-----------~~~i~~~~f~~~~~l~~~~~~~~~~~i~---- 268 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-----------FTELGKSVFYGCTDLESISIQNNKLRIG---- 268 (394)
T ss_dssp TTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-----------CCEECSSTTTTCSSCCEEEECCTTCEEC----
T ss_pred ccccccceeecCCCceE-eehhhcccCCCceEEECCC-----------ceecccccccccccceeEEcCCCcceee----
Confidence 67777777665332211 1111222334444332211 1111123456777888888765431100
Q ss_pred cccCchhHHHHHhcCCCCCCccEEEEEeeCCCCCCc-ccccccCCcEEEEecC
Q 002265 732 GRRKNEKDKQLLEALQPPLNLEEFGIVFYGGNIFPK-WLTSLTNLRELRLVSC 783 (945)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~ 783 (945)
...+..+..++.+...... +|. .+..+.+|+.+.+.++
T Consensus 269 -----------~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 269 -----------GSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp -----------SCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT
T ss_pred -----------ccccccccccceeccCcee---eccccccccccccccccccc
Confidence 0123344566665543321 222 3446778888877543
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.80 E-value=3.8e-05 Score=86.10 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=81.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-------C--------------------------C-ceEEEEEcCccCCCc-
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVN-------S--------------------------R-KKIFLVLDDVWDGNC- 251 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------~--------------------------~-~~~LlvlDdv~~~~~- 251 (945)
...+.|+|++|+||||||+.+++..... + . +.-+|++||++....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5679999999999999999998754211 0 2 567999999976432
Q ss_pred -CChhhHHhhccC-CCCCcEEEEEcCc---------hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHH
Q 002265 252 -NKWEPFFRCLKN-DLHGGKILVTTRN---------VSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREK 320 (945)
Q Consensus 252 -~~~~~l~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~ 320 (945)
...+.+...+.. ...|..||+||.. ..+...+... .++.+.+++.++..+++.+.+.......+.
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~-- 285 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGELPE-- 285 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCCCT--
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCCCH--
Confidence 122334333321 2346788888875 2334434332 378999999999999998876422211121
Q ss_pred HHHHHHHHHHHcCCChhHH
Q 002265 321 LESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 321 ~~~~~~~i~~~c~glPLai 339 (945)
+....|++.+.|.+-.+
T Consensus 286 --e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 286 --EVLNFVAENVDDNLRRL 302 (440)
T ss_dssp --THHHHHHHHCCSCHHHH
T ss_pred --HHHHHHHHhcCCCHHHH
Confidence 23556778888877544
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=0.00011 Score=79.81 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=96.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------- 233 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------- 233 (945)
.+++|.+..++.+...+... .+..+.++|+.|+||||+|+.+++....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~ 99 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-----KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKD 99 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHH
Confidence 35788888888888877642 2223899999999999999988764210
Q ss_pred -------cCCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceeeeCCCCChHHHHHHH
Q 002265 234 -------NSRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDIISIEQLAEEECWSLF 305 (945)
Q Consensus 234 -------~~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~~l~~l~~~~~~~lf 305 (945)
..+++-++|+|++........+.+...+.......++|++|.... +...+... ...+.+.+++.++..+.+
T Consensus 100 ~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR-~~~~~~~~l~~~~~~~~l 178 (340)
T 1sxj_C 100 FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ-CTRFRFQPLPQEAIERRI 178 (340)
T ss_dssp HHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHH
T ss_pred HHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh-ceeEeccCCCHHHHHHHH
Confidence 002367889999976544455556666655555677777765432 22222222 237899999999988888
Q ss_pred HHHhccCCCCcchHHHHHHHHHHHHHcCCChhHH
Q 002265 306 ERLVFFDRSSEDREKLESIGRKIARNCKGLPLAA 339 (945)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 339 (945)
...+-....... ......+++.++|-+--+
T Consensus 179 ~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 179 ANVLVHEKLKLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHTTTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 776532221112 234567888888877543
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.79 E-value=3e-05 Score=75.89 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=38.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|++.+++.+.+.+... ..+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-----TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-----CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998652 23456899999999999999888754
No 191
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.76 E-value=9.8e-05 Score=79.72 Aligned_cols=156 Identities=20% Similarity=0.202 Sum_probs=92.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc---------------------CCceE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN---------------------SRKKI 239 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~---------------------~~~~~ 239 (945)
.+++|.+..++.+...+......+.....+.++|+.|+||||||+.+++..... ..++-
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~ 104 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGD 104 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCC
Confidence 457888877777766654321112234679999999999999999998765110 02345
Q ss_pred EEEEcCccCCCcCChhhHHhhccCCC--------C----------CcEE-EEEcCchHHHHHhcCCCceeeeCCCCChHH
Q 002265 240 FLVLDDVWDGNCNKWEPFFRCLKNDL--------H----------GGKI-LVTTRNVSVARMMGTTELDIISIEQLAEEE 300 (945)
Q Consensus 240 LlvlDdv~~~~~~~~~~l~~~~~~~~--------~----------gs~i-iiTtr~~~~~~~~~~~~~~~~~l~~l~~~~ 300 (945)
++++|++........+.+...+.... . .-.+ -.|++...+...+...-...+.+++.+.++
T Consensus 105 v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKE 184 (334)
T ss_dssp EEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHH
Confidence 77889886543222333332222111 0 1122 235554433332222212358899999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHH
Q 002265 301 CWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAK 340 (945)
Q Consensus 301 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 340 (945)
-.+++.+.+-....... .+.+..|++.++|.|-.+.
T Consensus 185 l~~iL~~~~~~~~~~~~----~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 185 LKEIIKRAASLMDVEIE----DAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp HHHHHHHHHHHTTCCBC----HHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCcC----HHHHHHHHHhcCCChHHHH
Confidence 99999887632222122 3457788999999996543
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.74 E-value=0.00023 Score=75.56 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=91.3
Q ss_pred CceecchhHHHHHHHHHhcccc-------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+.+..... .....+.+.|+|++|+||||+|+.+++.....+
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~ 100 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEK 100 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHH
Confidence 4699999999999887743110 011245789999999999999999987643211
Q ss_pred -----------CceEEEEEcCccCCCcCC-----------hhhHHhhc---cCC--CCCcEEEEEcCchH-----HHHHh
Q 002265 236 -----------RKKIFLVLDDVWDGNCNK-----------WEPFFRCL---KND--LHGGKILVTTRNVS-----VARMM 283 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~~-----------~~~l~~~~---~~~--~~gs~iiiTtr~~~-----~~~~~ 283 (945)
.+..+|++|++....... ...+...+ +.. +.+..||.||.... +...+
T Consensus 101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~ 180 (297)
T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF 180 (297)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC
T ss_pred HHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC
Confidence 345789999996532110 01122222 111 13345666776532 23222
Q ss_pred cCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHH
Q 002265 284 GTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVI 342 (945)
Q Consensus 284 ~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 342 (945)
...+.+...+.++..+++...+-....... ......+++.+.|.+- ++..+
T Consensus 181 ----~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 181 ----TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ----CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred ----CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 236788888888888888776532221112 2345667888888775 44443
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.72 E-value=0.00028 Score=75.55 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=92.8
Q ss_pred CceecchhHHHHHHHHHhcc---c----cCCCCeEEEEEEecCCCcHHHHHHHHhccc-cccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCES---S----EQQKGLHVISLVGLGGIGKTTLAQLAYNND-EVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~---~----~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~-~~~~----------------- 235 (945)
.+++|.+..++.+.+.+... . ......+-|.++|++|+|||+||+++++.. ...+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~ 91 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHH
Confidence 57899999888887766311 0 001224678999999999999999999765 2111
Q ss_pred ------------CceEEEEEcCccCCCc------CC-h----hhHHhhccC---CCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 236 ------------RKKIFLVLDDVWDGNC------NK-W----EPFFRCLKN---DLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~------~~-~----~~l~~~~~~---~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
.+..+|++|++..... .. . ..+...+.. ...+..||.||.... +-..+...-.
T Consensus 92 ~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~ 171 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 171 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcC
Confidence 4567999999965310 01 1 112222221 233445665665432 1111111112
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC-hhHHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL-PLAAKVIG 343 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 343 (945)
..+.+...+.++..++|..++........ ......+++.+.|. +-.|..+.
T Consensus 172 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 47889999999999999887642221112 23456788888886 44455443
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.4e-05 Score=78.28 Aligned_cols=118 Identities=15% Similarity=0.046 Sum_probs=62.2
Q ss_pred cccCCCceeEEEeccC-CCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccc
Q 002265 514 SICGLDRLRSLLIYDR-SSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLS 592 (945)
Q Consensus 514 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~ 592 (945)
.+...+.|++|+++++ . +...-. ..+...+...+.|++|++++|.+ .......+...+....+|++|+|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~-i~~~g~-~~l~~~L~~~~~L~~L~Ls~n~i-------~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMN-IPVPTL-KACAEALKTNTYVKKFSIVGTRS-------NDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHTTCTTCCEEECTTCTT-CCHHHH-HHHHHHHTTCCSCCEEECTTSCC-------CHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHhcCCCCCEEEecCCCC-CCHHHH-HHHHHHHHhCCCcCEEECcCCCC-------ChHHHHHHHHHHHhCCCcCEEECc
Confidence 3445666777777665 3 111101 12334455566777777444431 111222344445555667777777
Q ss_pred ccccc-----ccChhhhcCCcccEEEe--cCCCCcc-----ccCcccccccCCCeeecCCC
Q 002265 593 ELGIE-----ILPETLCELYNLQKLDI--RRCRNLR-----ELPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 593 ~~~i~-----~lp~~i~~L~~L~~L~L--~~~~~l~-----~lP~~i~~L~~L~~L~l~~~ 641 (945)
+|.|. .+...+...++|++|+| ++|. +. .+...+...++|++|++++|
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 77665 24555666667777777 5554 32 13333444566667766665
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.68 E-value=7.6e-06 Score=89.06 Aligned_cols=88 Identities=22% Similarity=0.173 Sum_probs=47.5
Q ss_pred ccCCCceeEEEeccCCCCCCCc--h-hhhhHHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccc
Q 002265 515 ICGLDRLRSLLIYDRSSFNPSL--N-SSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNL 591 (945)
Q Consensus 515 ~~~~~~Lr~L~l~~~~~~~~~~--~-~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L 591 (945)
...+++|+.|.+.+........ + ..-+..++..+++|+.|.++++ .-..+|. + .+.+|+.|+|
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~------------~~l~l~~-~-~~~~L~~L~L 200 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT------------NNLSIGK-K-PRPNLKSLEI 200 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC------------BTCBCCS-C-BCTTCSEEEE
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC------------CCceecc-c-cCCCCcEEEE
Confidence 4456788888775532100000 0 0114455677778888885443 1012333 3 2677888888
Q ss_pred cccccc-ccChhhh--cCCcccEEEecC
Q 002265 592 SELGIE-ILPETLC--ELYNLQKLDIRR 616 (945)
Q Consensus 592 ~~~~i~-~lp~~i~--~L~~L~~L~L~~ 616 (945)
..|.+. .....++ ++++|++|+|+.
T Consensus 201 ~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 201 ISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp ECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred ecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 777654 2122333 677888887753
No 196
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.68 E-value=0.00016 Score=78.01 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc---------------------------------
Q 002265 187 VDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------------------------------- 233 (945)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------------------------------- 233 (945)
++..+.+...+... .-.+.+-++|+.|+|||++|+.+.+....
T Consensus 8 ~~~~~~l~~~i~~~----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAG----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK 83 (334)
T ss_dssp HHHHHHHHHHHHTT----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT
T ss_pred HHHHHHHHHHHHcC----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc
Confidence 34455666666432 23467999999999999999887643110
Q ss_pred --cC-------------------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchH-HHHHhcCCCceee
Q 002265 234 --NS-------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVS-VARMMGTTELDII 291 (945)
Q Consensus 234 --~~-------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~-~~~~~~~~~~~~~ 291 (945)
.. +++-++|+|+++.........+...+.....++.+|++|.+.. +...+... ...+
T Consensus 84 ~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR-c~~~ 162 (334)
T 1a5t_A 84 GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR-CRLH 162 (334)
T ss_dssp TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc-ceee
Confidence 00 4577889999987655555667777766666777777776543 33333332 3489
Q ss_pred eCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChhHHHHH
Q 002265 292 SIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPLAAKVI 342 (945)
Q Consensus 292 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 342 (945)
.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999988765 1 11 234467889999999766543
No 197
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=7.2e-06 Score=80.29 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=83.6
Q ss_pred hhhhHHHhccCCccceEeeccc-cccccccccCCCcccccCccccccCccccccccccccc-----ccChhhhcCCcccE
Q 002265 538 SSILSELFSKLVCLRALVIRQS-SLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE-----ILPETLCELYNLQK 611 (945)
Q Consensus 538 ~~~~~~~~~~l~~Lr~L~l~~~-~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~ 611 (945)
...+...+...+.|+.|++++| . +.......+...+....+|++|+|++|.|. .+...+...++|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~-------i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMN-------IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTT-------CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHHHhcCCCCCEEEecCCCC-------CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCE
Confidence 3456677888999999996655 4 222233445566777889999999999986 35666777799999
Q ss_pred EEecCCCCccc-----cCcccccccCCCeeec--CCCCCCcc----CccCCCCCCCCCcCCccccc
Q 002265 612 LDIRRCRNLRE-----LPAGIGKLMNMRSLLN--GETYSLKY----MPIGISKLTSLRTLDRFVVG 666 (945)
Q Consensus 612 L~L~~~~~l~~-----lP~~i~~L~~L~~L~l--~~~~~l~~----lp~~i~~L~~L~~L~~~~~~ 666 (945)
|+|++|. +.. +...+...++|++|++ ++|..... +...+...++|++|++..+.
T Consensus 98 L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 98 LNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 9999997 532 5566777889999999 66632211 22334445666666665443
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.63 E-value=1.7e-05 Score=73.83 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=59.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc----ccC--------------CceEEEE
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE----VNS--------------RKKIFLV 242 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~----~~~--------------~~~~Llv 242 (945)
-+++|++..++++.+.+..... ...-|-|+|..|+|||++|+.+++... ... .+.-.++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 80 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLY 80 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEE
T ss_pred cCceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEE
Confidence 3588999999888888764321 122477999999999999999987543 000 2234788
Q ss_pred EcCccCCCcCChhhHHhhccCC-CCCcEEEEEcCc
Q 002265 243 LDDVWDGNCNKWEPFFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 243 lDdv~~~~~~~~~~l~~~~~~~-~~gs~iiiTtr~ 276 (945)
||++.....+....+...+... ..+.+||.||..
T Consensus 81 lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 81 VGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred EeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 9999876544444555555433 345678877753
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.61 E-value=0.00045 Score=76.33 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=91.8
Q ss_pred CceecchhHHHHHHHHHhcccc-------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+.+..... .....+-|.|+|++|+|||+||+++++.....+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 194 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEK 194 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHH
Confidence 5799999999999888732110 011245789999999999999999987643221
Q ss_pred -----------CceEEEEEcCccCCCc-------CChh----hHHhhcc---C-CCCCcEEEEEcCchH-HHHHhcCCCc
Q 002265 236 -----------RKKIFLVLDDVWDGNC-------NKWE----PFFRCLK---N-DLHGGKILVTTRNVS-VARMMGTTEL 288 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~-------~~~~----~l~~~~~---~-~~~gs~iiiTtr~~~-~~~~~~~~~~ 288 (945)
....+|+||++..... .... .+...+. . ......||.||.... +...+...-.
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~ 274 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFI 274 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcc
Confidence 3347899999964310 0011 1221121 1 122345565665432 2111111212
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCChh-HHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLPL-AAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 342 (945)
..+.+...+.++..+++...+........ ......+++.+.|..- ++..+
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 36889999999999999887643222122 2345678888887543 55444
No 200
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=1.6e-05 Score=75.71 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=47.1
Q ss_pred cCCCccceeeccCccccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCCCC-cCCCCCCCccEEEE
Q 002265 836 TAFPKLKSLEIKGLDELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKVLP-DYLLRTTTLQKLTI 914 (945)
Q Consensus 836 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l 914 (945)
..+++|++|+|++|.++++.... .+..++ ...++|+.|+|++|++++.-. ..+.++++|+.|++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~----------~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L 146 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLE-----RLSQLE----------NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL 146 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHH-----HHHTCH----------HHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEE
T ss_pred cCCCCCCEEEeCCCCccCHHHHH-----HHHhcc----------cccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEEC
Confidence 47888889999888877654321 111110 001358999999998887621 23446889999999
Q ss_pred eCCcchHH
Q 002265 915 WGCPLLEN 922 (945)
Q Consensus 915 ~~c~~L~~ 922 (945)
++|+.++.
T Consensus 147 ~~c~~Itd 154 (176)
T 3e4g_A 147 SDLPGVKE 154 (176)
T ss_dssp ESCTTCCC
T ss_pred CCCCCCCc
Confidence 99987754
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.59 E-value=0.00044 Score=77.61 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=93.1
Q ss_pred CceecchhHHHHHHHHHhcc-------ccCCCCeEEEEEEecCCCcHHHHHHHHhccc-cccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCES-------SEQQKGLHVISLVGLGGIGKTTLAQLAYNND-EVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~-------~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~-~~~~----------------- 235 (945)
.+++|.+..++.+.+.+... .......+-|.++|++|+|||+||+++++.. ...+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~ 213 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 213 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHH
Confidence 56899999999888876311 0001234678999999999999999999765 2111
Q ss_pred ------------CceEEEEEcCccCCCc-------CChhhHHh----hccC---CCCCcEEEEEcCchHH-HHHhcCCCc
Q 002265 236 ------------RKKIFLVLDDVWDGNC-------NKWEPFFR----CLKN---DLHGGKILVTTRNVSV-ARMMGTTEL 288 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~-------~~~~~l~~----~~~~---~~~gs~iiiTtr~~~~-~~~~~~~~~ 288 (945)
.+..+|+||++..... .....+.. .+.. ...+..||.||..... ...+...-.
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~ 293 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 293 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcc
Confidence 3457999999975311 01112222 2211 1345566667765422 111111212
Q ss_pred eeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC-hhHHHHH
Q 002265 289 DIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL-PLAAKVI 342 (945)
Q Consensus 289 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 342 (945)
..+.+...+.++..++|..++......... .....|++.+.|. +-.|..+
T Consensus 294 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHH
Confidence 478888899999999998876422111122 2345677888884 4444444
No 202
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.53 E-value=0.00015 Score=75.61 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=34.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++|.+..+.++.+.+..... ....|.|+|..|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~---~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP---LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT---SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3588999999888877654221 12357799999999999999998753
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=5.9e-05 Score=73.40 Aligned_cols=89 Identities=18% Similarity=0.155 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------------------
Q 002265 186 RVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------------ 235 (945)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------------ 235 (945)
....++.+.+++..-.. ..-+.++|+|+.|+||||||+.+++......
T Consensus 19 ~~~~~~~~~~~~~~~~~--~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP--EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLK 96 (180)
T ss_dssp HHHHHHHHHHHHHSCCG--GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHhccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHH
Confidence 34445555555533211 1246799999999999999999887653110
Q ss_pred --CceEEEEEcCccCCCcCChh--hHHhhccCC-CCCcEEEEEcCc
Q 002265 236 --RKKIFLVLDDVWDGNCNKWE--PFFRCLKND-LHGGKILVTTRN 276 (945)
Q Consensus 236 --~~~~LlvlDdv~~~~~~~~~--~l~~~~~~~-~~gs~iiiTtr~ 276 (945)
.+.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 23458999999753334443 233333221 246788888864
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.00031 Score=74.58 Aligned_cols=130 Identities=16% Similarity=0.073 Sum_probs=81.1
Q ss_pred CceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.+++|.+..++.+.+.+...- .+-...+.|.|+|++|+|||+||+++++.....+
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~ 94 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 94 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchH
Confidence 468999998888887764210 0012345789999999999999999987643221
Q ss_pred ------------CceEEEEEcCccCCC--------------cCChhhHHhhccC--CCCCcEEEEEcCchHHHH-HhcC-
Q 002265 236 ------------RKKIFLVLDDVWDGN--------------CNKWEPFFRCLKN--DLHGGKILVTTRNVSVAR-MMGT- 285 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~--------------~~~~~~l~~~~~~--~~~gs~iiiTtr~~~~~~-~~~~- 285 (945)
....+|++|++.... ......+...+.. ...+..||.||....... .+-.
T Consensus 95 ~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~ 174 (301)
T 3cf0_A 95 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRP 174 (301)
T ss_dssp THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGST
T ss_pred HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcC
Confidence 345899999995310 0002333333332 123556777776653322 1111
Q ss_pred -CCceeeeCCCCChHHHHHHHHHHhc
Q 002265 286 -TELDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 286 -~~~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
.-...+.+...+.++-.+++....-
T Consensus 175 gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 175 GRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CccceEEecCCcCHHHHHHHHHHHHc
Confidence 1124789999999999998877663
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.45 E-value=0.00032 Score=75.00 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=37.8
Q ss_pred CceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++|.+..++.+...+..... .......+.++|++|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3578999988888877764311 11224689999999999999999887653
No 206
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=3e-05 Score=79.84 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=45.8
Q ss_pred cccCccccccccccccccc---ChhhhcCCcccEEEecCCCCccccCccccccc--CCCeeecCCCCCCccCcc------
Q 002265 581 RKLIHLKYLNLSELGIEIL---PETLCELYNLQKLDIRRCRNLRELPAGIGKLM--NMRSLLNGETYSLKYMPI------ 649 (945)
Q Consensus 581 ~~L~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~--~L~~L~l~~~~~l~~lp~------ 649 (945)
.++++|+.|+|++|.|..+ |..++.+++|++|+|++|. +..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3456677777777766543 3555667777777777765 5444 2244444 677777777654333331
Q ss_pred -CCCCCCCCCcCC
Q 002265 650 -GISKLTSLRTLD 661 (945)
Q Consensus 650 -~i~~L~~L~~L~ 661 (945)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244555666655
No 207
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.44 E-value=0.00021 Score=75.76 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=36.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~---~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP---SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS---TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC---CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4589999999998888765332 2235779999999999999999874
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.43 E-value=0.00042 Score=73.98 Aligned_cols=127 Identities=10% Similarity=0.102 Sum_probs=77.2
Q ss_pred CceecchhHHHHHHHHHhcccc---------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE---------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~---------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
..++|.+..++.+...+...-. .......+.++|++|+|||++|+.+++......
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4689999999888877753100 001234678999999999999999876532100
Q ss_pred --------------------CceEEEEEcCccCCCcCC------------hhhHHhhccCC----------CCCcEEEEE
Q 002265 236 --------------------RKKIFLVLDDVWDGNCNK------------WEPFFRCLKND----------LHGGKILVT 273 (945)
Q Consensus 236 --------------------~~~~LlvlDdv~~~~~~~------------~~~l~~~~~~~----------~~gs~iiiT 273 (945)
+...+|+||++....... ...+...+... ..+..+|.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 136799999997654333 34444444432 124455555
Q ss_pred cC----ch-HHHHHhcCCCceeeeCCCCChHHHHHHHHH
Q 002265 274 TR----NV-SVARMMGTTELDIISIEQLAEEECWSLFER 307 (945)
Q Consensus 274 tr----~~-~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~ 307 (945)
+. .. .+...+...-...+.+.+++.++..+++.+
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 41 11 111111111123699999999999888874
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00014 Score=74.92 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=65.5
Q ss_pred hHHHhccCCccceEeeccccccccccccCCCcccccCccccccCcccccccccccccccChhhhcCC--cccEEEecCCC
Q 002265 541 LSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIEILPETLCELY--NLQKLDIRRCR 618 (945)
Q Consensus 541 ~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~ 618 (945)
++....+++.|+.|+|++|.+. .+..+|..++.+++|++|+|++|.|..+ ..+..+. +|++|+|++|.
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~l~---------~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNRLY---------RLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSCCC---------CCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred HHHHHhhCCCCCEEECCCCCCC---------CCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 3444477899999995555432 1234556778999999999999999976 4466666 99999999998
Q ss_pred CccccCc-------ccccccCCCeeec
Q 002265 619 NLRELPA-------GIGKLMNMRSLLN 638 (945)
Q Consensus 619 ~l~~lP~-------~i~~L~~L~~L~l 638 (945)
.-..+|. .+..+++|+.||-
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CccccCcchhHHHHHHHHCcccCeECC
Confidence 4455663 3678999999974
No 210
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.36 E-value=6.4e-05 Score=71.54 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=50.8
Q ss_pred cCCcEEEEecCCCCC-cCCCCCccc-cceEeeccccCceEeCccccCCCCCCCCCCCCCCCCCcC-cCCCccceeeccCc
Q 002265 773 TNLRELRLVSCVDCE-HLPPLGKLA-LEKLELGNLKSVKRLGNEFLGIEESSEDDPSSSSSSSSV-TAFPKLKSLEIKGL 849 (945)
Q Consensus 773 ~~L~~L~L~~~~~~~-~l~~l~~l~-L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~ 849 (945)
.+|+.|++++|.... .+..+..++ |+.|+|++|..+..-+...... . ...++|++|+|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~----------------~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ----------------LENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT----------------CHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh----------------cccccCCCCEEEcCCC
Confidence 356777777765221 244455666 7777777776554332221110 0 01346888888888
Q ss_pred cccccccccccccccccCCCcccccCCCCCCCCCccceEeeccCcCCCC
Q 002265 850 DELEEWNYRITRKENVSIMPQLPILEDHRTTDIPRLSSLRIWYCPKLKV 898 (945)
Q Consensus 850 ~~L~~~~~~~~~~~~~~~lp~l~~~~~~~l~~l~~L~~L~l~~c~~L~~ 898 (945)
+++++-.. ..+..+++|+.|+|++|+.++.
T Consensus 125 ~~ITD~Gl-------------------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 125 GNVTDKGI-------------------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCHHHH-------------------HHGGGCTTCCEEEEESCTTCCC
T ss_pred CcCCHHHH-------------------HHHhcCCCCCEEECCCCCCCCc
Confidence 76654321 0123345588888888877765
No 211
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.35 E-value=6.6e-05 Score=74.61 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-------------------------------Cc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------------------RK 237 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------------------~~ 237 (945)
.++.+.+++..... ....+.+.|+|++|+||||||+++++...... .+
T Consensus 37 ~~~~~~~~~~~~~~-~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (202)
T 2w58_A 37 AIRFAERFVAEYEP-GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK 115 (202)
T ss_dssp HHHHHHHHHHHCCS-SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC
Confidence 44555556554321 11126789999999999999999887542211 12
Q ss_pred eEEEEEcCccCCCcCChhh--HHh-hccCC-CCCcEEEEEcCc
Q 002265 238 KIFLVLDDVWDGNCNKWEP--FFR-CLKND-LHGGKILVTTRN 276 (945)
Q Consensus 238 ~~LlvlDdv~~~~~~~~~~--l~~-~~~~~-~~gs~iiiTtr~ 276 (945)
.-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 116 ~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 116 VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2389999997643333322 222 22211 235578888874
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0013 Score=71.06 Aligned_cols=151 Identities=14% Similarity=0.074 Sum_probs=90.1
Q ss_pred CceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.++.+++|.+.+.-.- -+-...+=|-++|++|+|||.||+++++.....+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHH
Confidence 568899988888877653210 0112345688999999999999999998755333
Q ss_pred ------------CceEEEEEcCccCCCc--------CC------hhhHHhhccC--CCCCcEEEEEcCchHHHHH-h-c-
Q 002265 236 ------------RKKIFLVLDDVWDGNC--------NK------WEPFFRCLKN--DLHGGKILVTTRNVSVARM-M-G- 284 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~--------~~------~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~-~-~- 284 (945)
...++|++|+++..-. .. ...+...+.. ...+-.||.||...+.... + .
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRp 307 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRP 307 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHST
T ss_pred HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCC
Confidence 5678999999965210 00 1112222222 2334456667765433211 1 1
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 285 TTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
..-+..+.+...+.++-.++|..+.-.-.- ...-+ ...+++.+.|.-
T Consensus 308 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 308 GRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 111348999999999999999876532111 11112 245667777643
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=0.008 Score=66.38 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=63.2
Q ss_pred ccccCCC-ceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCcccccCc-cccccCcccccc
Q 002265 513 MSICGLD-RLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLN 590 (945)
Q Consensus 513 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~ 590 (945)
.+|.++. .|+++.+...- ..+-..+|.++.+|+.+.+..+. ...+..+.. .|..+.+|+.+.
T Consensus 57 ~aF~~~~~~L~sI~iP~sv-------t~Ig~~AF~~C~~L~~i~~~~n~---------p~~l~~Ig~~aF~~c~~L~~i~ 120 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTV-------TEIGSNAFYNCTSLKRVTIQDNK---------PSCVKKIGRQAFMFCSELTDIP 120 (394)
T ss_dssp TTTTTCCSCCCEEEECTTC-------CEECTTTTTTCTTCCEEEEGGGC---------CCCCCEECTTTTTTCTTCCBCG
T ss_pred hhccCCCCcCEEEEECCCe-------eEEhHHHhhCCccCceEeecCCC---------CCeeeEechhhchhcccceeec
Confidence 3555664 57888775432 23345568888888888844321 122444543 355667777777
Q ss_pred cccccccccC-hhhhcCCcccEEEecCCCCccccCc-ccccccCCCeeecCC
Q 002265 591 LSELGIEILP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRSLLNGE 640 (945)
Q Consensus 591 L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~ 640 (945)
+..+ ++.++ ..+..+.+|+.+.+... +..++. .+..+.+|+.+.+..
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cCCc-cceehhhhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 6554 44333 34677788888887542 344443 345566777666644
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0011 Score=73.02 Aligned_cols=152 Identities=15% Similarity=0.081 Sum_probs=91.1
Q ss_pred CCceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
=.++.|.++.+++|.+.+.-.- .+-...+=|-++|++|+|||+||+++++.....+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHH
Confidence 3568899988888877653210 0112356789999999999999999998754332
Q ss_pred -------------CceEEEEEcCccCCC------cCC--------hhhHHhhccC--CCCCcEEEEEcCchHHHHHhcCC
Q 002265 236 -------------RKKIFLVLDDVWDGN------CNK--------WEPFFRCLKN--DLHGGKILVTTRNVSVARMMGTT 286 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~------~~~--------~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~~~~~ 286 (945)
...++|++|+++..- ... +..+...+.. ...+..||.||...+.....-..
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllR 339 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLR 339 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTS
T ss_pred HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhC
Confidence 567999999996421 000 1122222221 22345677788765443221111
Q ss_pred ---CceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 287 ---ELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 287 ---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
-+..+.+...+.++-.++|..+.-.-.. ...-++ ..+++.+.|.-
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 340 PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 1347888888888888888776532211 111122 45667777643
No 215
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.27 E-value=0.00056 Score=73.75 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=77.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------------Cc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------------RK 237 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------------~~ 237 (945)
..++|+++.++.+...+... .-+.++|++|+|||+||+.+.+.....+ ..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~ 99 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKG 99 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTT
T ss_pred cceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCC
Confidence 46889999998888877642 2588999999999999999876422110 11
Q ss_pred e----------EEEEEcCccCCCcCChhhHHhhccCC-----------CCCcEEEEEcCchH------HHHHhcCCCcee
Q 002265 238 K----------IFLVLDDVWDGNCNKWEPFFRCLKND-----------LHGGKILVTTRNVS------VARMMGTTELDI 290 (945)
Q Consensus 238 ~----------~LlvlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iiiTtr~~~------~~~~~~~~~~~~ 290 (945)
. .++++|++..........+...+... .....||.|+.... +...+-..-...
T Consensus 100 ~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~ 179 (331)
T 2r44_A 100 NFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMK 179 (331)
T ss_dssp EEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEE
T ss_pred ceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEE
Confidence 1 38899999776544444444443321 23445665665221 111111111225
Q ss_pred eeCCCCChHHHHHHHHHHhc
Q 002265 291 ISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 291 ~~l~~l~~~~~~~lf~~~~~ 310 (945)
+.+.+.+.++-.+++...+.
T Consensus 180 i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 180 IHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EECCCCCHHHHHHHHHHHHC
T ss_pred EEcCCCCHHHHHHHHHhccc
Confidence 88999999999999888764
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.23 E-value=0.00025 Score=73.95 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=74.7
Q ss_pred CceecchhHHHHHHHHHhcccc-------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++.+.+.+..-.. +....+-+.|+|++|+|||+||+.+++.....+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHH
Confidence 5689999888877776541000 001122377999999999999999987543211
Q ss_pred -----------CceEEEEEcCccCCCc---------------CChhhHHhhccCC---CCCcEEEEEcCchHHHH-HhcC
Q 002265 236 -----------RKKIFLVLDDVWDGNC---------------NKWEPFFRCLKND---LHGGKILVTTRNVSVAR-MMGT 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~---------------~~~~~l~~~~~~~---~~gs~iiiTtr~~~~~~-~~~~ 285 (945)
.+..+|++|++..... .....+...+... .....||.||....... ....
T Consensus 91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r 170 (268)
T 2r62_A 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMR 170 (268)
T ss_dssp SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGS
T ss_pred HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcC
Confidence 2347899999964311 1122232222211 12245666776543211 1111
Q ss_pred --CCceeeeCCCCChHHHHHHHHHHh
Q 002265 286 --TELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 286 --~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.-...+.+...+.++..+++...+
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 112367888888888888887665
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.20 E-value=0.00043 Score=78.17 Aligned_cols=130 Identities=11% Similarity=0.038 Sum_probs=81.2
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.+++|.+..++++.+.+..... +....+-|.|+|++|+|||++|+++++.....+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~ 283 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhH
Confidence 3589999999999887753200 012344689999999999999999987643221
Q ss_pred ------------CceEEEEEcCccCCCc------C-----ChhhHHhhccC--CCCCcEEEEEcCchH-HHHHhcC--CC
Q 002265 236 ------------RKKIFLVLDDVWDGNC------N-----KWEPFFRCLKN--DLHGGKILVTTRNVS-VARMMGT--TE 287 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~------~-----~~~~l~~~~~~--~~~gs~iiiTtr~~~-~~~~~~~--~~ 287 (945)
++..+|+||++..... . ....+...+.. ...+..||.||.... +...+.. .-
T Consensus 284 ~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf 363 (489)
T 3hu3_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (489)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcC
Confidence 4557999999943110 0 11223333332 223446666666543 2222221 11
Q ss_pred ceeeeCCCCChHHHHHHHHHHhc
Q 002265 288 LDIISIEQLAEEECWSLFERLVF 310 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~~ 310 (945)
...+.+...+.++-.++|..++.
T Consensus 364 ~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 364 DREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp CEEEECCCCCHHHHHHHHHHHTT
T ss_pred ceEEEeCCCCHHHHHHHHHHHHh
Confidence 23689999999999999988763
No 218
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.18 E-value=0.0025 Score=71.97 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=71.8
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc-----------------------C--
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-----------------------S-- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-----------------------~-- 235 (945)
..++||+.+++.+...+.... ..-+.++|++|+|||++|+.+++..... +
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-----~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~ 254 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CT
T ss_pred CCccCcHHHHHHHHHHHhccC-----CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHH
Confidence 459999999999999987532 2245799999999999999988764110 0
Q ss_pred -----------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHH------HhcCCCceeeeCCCCCh
Q 002265 236 -----------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVAR------MMGTTELDIISIEQLAE 298 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~------~~~~~~~~~~~l~~l~~ 298 (945)
.+..+|++|.- .+....+...+.. ..-++|.+|....... .+... ...+.+.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~R-f~~i~v~~p~~ 327 (468)
T 3pxg_A 255 RLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERR-FQPIQVDQPSV 327 (468)
T ss_dssp THHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHS-EEEEECCCCCH
T ss_pred HHHHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHh-CccceeCCCCH
Confidence 23578888811 1122223322321 1345665555433111 11111 23699999999
Q ss_pred HHHHHHHHHHh
Q 002265 299 EECWSLFERLV 309 (945)
Q Consensus 299 ~~~~~lf~~~~ 309 (945)
++..+++...+
T Consensus 328 e~~~~iL~~~~ 338 (468)
T 3pxg_A 328 DESIQILQGLR 338 (468)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999998755
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00018 Score=67.23 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=43.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccC-----------------CceEEEEEcCccCCCcCChhhHHhhccCC-CCCc-
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNS-----------------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-LHGG- 268 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~gs- 268 (945)
..++|+|..|+|||||++.+++...... .+.-++||||+.......-+.+...+... ..|.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~ 116 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKG 116 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCc
Confidence 4799999999999999999987542211 13348899999654322223333333211 1233
Q ss_pred EEEEEcCc
Q 002265 269 KILVTTRN 276 (945)
Q Consensus 269 ~iiiTtr~ 276 (945)
.||+||+.
T Consensus 117 ~iiits~~ 124 (149)
T 2kjq_A 117 FLLLGSEY 124 (149)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 48888874
No 220
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00098 Score=70.36 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=82.8
Q ss_pred cchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc--------c---------cc-------------
Q 002265 185 GRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND--------E---------VN------------- 234 (945)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~--------~---------~~------------- 234 (945)
|.++.++.+...+... .....-++|+.|+||||+|+.+.+.. . ..
T Consensus 1 g~~~~~~~L~~~i~~~-----~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTC-----SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCC-----CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh
Confidence 4455666777776532 25789999999999999999886531 0 00
Q ss_pred ----CCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCch-HHHHHhcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 235 ----SRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNV-SVARMMGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 235 ----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.+++-++|+|++........+.+...+....+.+.+|++|.+. .+...+... ++++.++++++..+.+.+.+
T Consensus 76 ~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 76 YSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 0456788999998776666777887887766778877776543 444444443 79999999999999888765
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.12 E-value=0.00094 Score=81.69 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=73.3
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc--------cC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--------NS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~--------~~----------------- 235 (945)
..++||++++..+++.+.... ..-+.++|.+|+||||+|+.+++.... ..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-----~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-----CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred cccCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 458999999999999986532 234689999999999999998875411 00
Q ss_pred -----------------CceEEEEEcCccCCC--------cCChhhHHhhccCCCCCcEEEEEcCchHHHH-----HhcC
Q 002265 236 -----------------RKKIFLVLDDVWDGN--------CNKWEPFFRCLKNDLHGGKILVTTRNVSVAR-----MMGT 285 (945)
Q Consensus 236 -----------------~~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~-----~~~~ 285 (945)
+++.+|++|++.... .+....+...+.. .+..+|.+|....... .+..
T Consensus 245 g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~r 322 (854)
T 1qvr_A 245 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALER 322 (854)
T ss_dssp -CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCS
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHh
Confidence 356899999996532 1111123333322 2334555554433211 1111
Q ss_pred CCceeeeCCCCChHHHHHHHHHH
Q 002265 286 TELDIISIEQLAEEECWSLFERL 308 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~ 308 (945)
. ...+.+.+++.++..+++...
T Consensus 323 R-f~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 323 R-FQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp C-CCCEEECCCCHHHHHHHHHHH
T ss_pred C-CceEEeCCCCHHHHHHHHHhh
Confidence 1 235889999999999988643
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.11 E-value=0.00064 Score=82.16 Aligned_cols=129 Identities=14% Similarity=0.205 Sum_probs=80.5
Q ss_pred CceecchhHHHHHHHHHhccccC----CCCeEEEEEEecCCCcHHHHHHHHhccccccC---------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ----QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS--------------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~----~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~--------------------- 235 (945)
..++|.+..++.+...+.....+ ......+.++|++|+|||++|+++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 56899999988888877643211 12234799999999999999999887641100
Q ss_pred -------CceEEEEEcCccCCCcCChhhHHhhccCC-----------CCCcEEEEEcCc-----hHH----HHHh----c
Q 002265 236 -------RKKIFLVLDDVWDGNCNKWEPFFRCLKND-----------LHGGKILVTTRN-----VSV----ARMM----G 284 (945)
Q Consensus 236 -------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iiiTtr~-----~~~----~~~~----~ 284 (945)
...-+|+||++.....+....+...+..+ ....+||.||.. ..+ ...+ -
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 22347899999876655555566555432 235588888873 111 1111 0
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHh
Q 002265 285 TTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
..-+.++.+.+++.++-.+++...+
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1112478889999888877776543
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0022 Score=70.40 Aligned_cols=150 Identities=16% Similarity=0.072 Sum_probs=88.9
Q ss_pred CceecchhHHHHHHHHHhcc--------ccCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCES--------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~--------~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.++.+++|.+.+.-. .-+-...+-|-++|++|+|||+||+++++.....+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGese 288 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGA 288 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHH
Confidence 46889998888887754210 00113456788999999999999999998654332
Q ss_pred ------------CceEEEEEcCccCCCc------CC--------hhhHHhhccCC--CCCcEEEEEcCchHHHHH-h-c-
Q 002265 236 ------------RKKIFLVLDDVWDGNC------NK--------WEPFFRCLKND--LHGGKILVTTRNVSVARM-M-G- 284 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~------~~--------~~~l~~~~~~~--~~gs~iiiTtr~~~~~~~-~-~- 284 (945)
...++|++|++...-. .. ...+...+... ..+..||.||...+.... + .
T Consensus 289 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRp 368 (467)
T 4b4t_H 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRP 368 (467)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHST
T ss_pred HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcc
Confidence 5678999999964210 00 01122222221 234456667765432211 1 1
Q ss_pred CCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC
Q 002265 285 TTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 285 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 335 (945)
..-+..+.+...+.++-.++|..+.-.-.- ...-++ ..+++.+.|.
T Consensus 369 GRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 369 GRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred ccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 112458999999999999999876632211 111122 4466777775
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.03 E-value=0.0011 Score=68.39 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=73.3
Q ss_pred CceecchhHHHHHHHHHh---cccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLC---ESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~---~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++++.+.+. .... +....+-+.|+|++|+||||+|+.+++.....+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~ 91 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 91 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHH
Confidence 468999988777665432 1110 001123488999999999999999987543111
Q ss_pred -----------CceEEEEEcCccCCCcC--------------ChhhHHhhccC--CCCCcEEEEEcCchHHH-HHhcC--
Q 002265 236 -----------RKKIFLVLDDVWDGNCN--------------KWEPFFRCLKN--DLHGGKILVTTRNVSVA-RMMGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~--------------~~~~l~~~~~~--~~~gs~iiiTtr~~~~~-~~~~~-- 285 (945)
....++++|++...... ....+...+.. ...+..||.||...... .....
T Consensus 92 ~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~ 171 (257)
T 1lv7_A 92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 171 (257)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTT
T ss_pred HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCC
Confidence 23468999999431100 01112222221 12345677777654321 21211
Q ss_pred CCceeeeCCCCChHHHHHHHHHHh
Q 002265 286 TELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.-...+.+...+.++-.+++..+.
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 112467888888888888887665
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.02 E-value=0.0024 Score=70.59 Aligned_cols=125 Identities=12% Similarity=0.103 Sum_probs=78.6
Q ss_pred EEEEEeecCCCCCC-CccccCCCceeEEEeccCCCCCCCchhhhhHHHhccCCccceEeeccccccccccccCCCccccc
Q 002265 498 VRHLGLNFEGGDSF-PMSICGLDRLRSLLIYDRSSFNPSLNSSILSELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREI 576 (945)
Q Consensus 498 ~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~l 576 (945)
+..+.+... +..+ ..+|.++++|+.+.+..+. ++.+..+-..+|..+..|+.+. +. ..+..+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~---p~~l~~Ig~~aF~~c~~L~~i~------------~~-~~~~~I 128 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK---PSCVKKIGRQAFMFCSELTDIP------------IL-DSVTEI 128 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC---CCCCCEECTTTTTTCTTCCBCG------------GG-TTCSEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCC---CCeeeEechhhchhcccceeec------------cC-Ccccee
Confidence 555555432 3333 4678899999999987653 1112233445688888888776 32 224455
Q ss_pred Cc-cccccCcccccccccccccccChhhhcCCcccEEEecCCCCccccCcccccccCCCeeecCCC
Q 002265 577 PK-NVRKLIHLKYLNLSELGIEILPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 577 p~-~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~ 641 (945)
+. .+..+.+|+.+.+..+....-...+..+.+|+.+.+..+ +..+......-.+|..+.+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred hhhhhhhhcccccccccceeeeecccceecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 43 356788889888876433333456778899999998753 5666655445567777776543
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0024 Score=69.28 Aligned_cols=150 Identities=14% Similarity=0.076 Sum_probs=88.9
Q ss_pred CceecchhHHHHHHHHHhcc---c-----cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCES---S-----EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~---~-----~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.++.+++|.+.+.-. . .+-...+=|-++|++|+|||.||+++++.....+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHH
Confidence 56889998888887765321 0 0112346799999999999999999998754332
Q ss_pred ------------CceEEEEEcCccCCCc--------C--C----hhhHHhhccC--CCCCcEEEEEcCchHHHHHhcC--
Q 002265 236 ------------RKKIFLVLDDVWDGNC--------N--K----WEPFFRCLKN--DLHGGKILVTTRNVSVARMMGT-- 285 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~--------~--~----~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~~~~-- 285 (945)
...++|++|+++..-. . . ...+...+.. ...+..||.||...+.....-.
T Consensus 262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRp 341 (437)
T 4b4t_I 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRP 341 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCT
T ss_pred HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcC
Confidence 5678999999864210 0 0 1112222221 2234466777766554332111
Q ss_pred -CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC
Q 002265 286 -TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 286 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 335 (945)
.-+..+.+...+.++-.++|..+.-.-. ....-++ ..+++.+.|.
T Consensus 342 GRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 342 GRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp TTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSC
T ss_pred CceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 1134688888888888889987663221 1111122 4466667664
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00077 Score=74.13 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=88.2
Q ss_pred CceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.++.+++|.+.+...- .+-...+-|-++|++|+|||+||+++++.....+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese 260 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHH
Confidence 578999998888877643210 0123456789999999999999999998754332
Q ss_pred ------------CceEEEEEcCccCC------CcC----Ch----hhHHhhccCC--CCCcEEEEEcCchHHHHH-hcC-
Q 002265 236 ------------RKKIFLVLDDVWDG------NCN----KW----EPFFRCLKND--LHGGKILVTTRNVSVARM-MGT- 285 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~------~~~----~~----~~l~~~~~~~--~~gs~iiiTtr~~~~~~~-~~~- 285 (945)
...++|++|+++.. ... .. ..+...+... ..+-.||.||...+.... +-.
T Consensus 261 ~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRp 340 (434)
T 4b4t_M 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRS 340 (434)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCST
T ss_pred HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcC
Confidence 45789999998531 000 01 1122222221 234456667776543322 111
Q ss_pred -CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCC
Q 002265 286 -TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGL 335 (945)
Q Consensus 286 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 335 (945)
.-+..+.+...+.++-.++|..+.-.-.. ...-++ ..+++.+.|.
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 341 GRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 12347889988998888888766532111 111122 4466777664
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.97 E-value=0.0016 Score=72.81 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=87.0
Q ss_pred CceecchhHHHHHHHHHhcccc-------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.++.++++.+.+..-.. +..-.+-|.|+|++|+|||+||+++++.....+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~ 95 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHH
Confidence 4689999887777665432100 001123488999999999999999987643221
Q ss_pred -----------CceEEEEEcCccCCCcC--------------ChhhHHhhccC--CCCCcEEEEEcCchHHHHH-hcC--
Q 002265 236 -----------RKKIFLVLDDVWDGNCN--------------KWEPFFRCLKN--DLHGGKILVTTRNVSVARM-MGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~--------------~~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~-~~~-- 285 (945)
....+|+||++...... ....+...+.. ...+..||.||...+.... .-.
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~g 175 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccC
Confidence 45679999999653210 11222222221 1235567777776544321 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 286 TELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
.-...+.+...+.++-.+++..++-...- ..... ...+++.+.|..
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred cceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 11347888888888888888776532211 11111 234677777766
No 229
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0027 Score=69.69 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=75.3
Q ss_pred CCceecchhHHHHHHHHHhccc--------cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~--------~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
-.++.|.++.+++|.+.+.-.- -+-...+-|-++|++|+|||+||+++++.....+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~ 250 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG 250 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchh
Confidence 3578999998888877653210 0113356689999999999999999998754332
Q ss_pred -------------CceEEEEEcCccCC---------CcC-C----hhhHHhhcc--CCCCCcEEEEEcCchHHHH-Hh-c
Q 002265 236 -------------RKKIFLVLDDVWDG---------NCN-K----WEPFFRCLK--NDLHGGKILVTTRNVSVAR-MM-G 284 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~---------~~~-~----~~~l~~~~~--~~~~gs~iiiTtr~~~~~~-~~-~ 284 (945)
...++|++|+++.. ..+ . ...+...+. ....+-.||.||...+... .+ .
T Consensus 251 e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllR 330 (428)
T 4b4t_K 251 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLR 330 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHS
T ss_pred HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhc
Confidence 56789999999421 001 1 111222222 1234556777776543221 11 1
Q ss_pred -CCCceeeeCCCC-ChHHHHHHHHHHh
Q 002265 285 -TTELDIISIEQL-AEEECWSLFERLV 309 (945)
Q Consensus 285 -~~~~~~~~l~~l-~~~~~~~lf~~~~ 309 (945)
..-+..+++..+ +.++-.++|..+.
T Consensus 331 pGRfd~~I~~p~lPd~~~R~~Il~~~~ 357 (428)
T 4b4t_K 331 PGRLDRKIEFPSLRDRRERRLIFGTIA 357 (428)
T ss_dssp SSSEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHh
Confidence 111235777655 4555555666554
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.93 E-value=0.0017 Score=78.57 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=76.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc--------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN-------------------------- 234 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~-------------------------- 234 (945)
..++||+.+++.+.+.|.... ..-+.++|.+|+||||+|+.+++.....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-----~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 260 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-----SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCS
T ss_pred CCccCCHHHHHHHHHHHhccC-----CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccccc
Confidence 468999999999999987532 2346899999999999999987654110
Q ss_pred ---------------CCceEEEEEcCccCCCc------CChhhHHhhccC--CCCCcEEEEEcCchHHHHHhcC-----C
Q 002265 235 ---------------SRKKIFLVLDDVWDGNC------NKWEPFFRCLKN--DLHGGKILVTTRNVSVARMMGT-----T 286 (945)
Q Consensus 235 ---------------~~~~~LlvlDdv~~~~~------~~~~~l~~~~~~--~~~gs~iiiTtr~~~~~~~~~~-----~ 286 (945)
..+..+|++|++..... ...+ ....+.. ...+..+|.+|........... .
T Consensus 261 g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~-~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~ 339 (758)
T 1r6b_X 261 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD-AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_dssp SCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH-HHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH-HHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHh
Confidence 02358899999965310 1111 1111211 1224466666655443211110 0
Q ss_pred CceeeeCCCCChHHHHHHHHHHh
Q 002265 287 ELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
....+.+.+.+.++..+++....
T Consensus 340 Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 340 RFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp GEEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCHHHHHHHHHHHH
Confidence 12368899999999988887644
No 231
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.78 E-value=0.0027 Score=76.83 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC--------------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS-------------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~-------------------- 235 (945)
...++|.+..++.+...+..... .+.....+.++|++|+|||++|+.+++.....+
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCC
Confidence 34688999988888777653211 012345789999999999999999876532100
Q ss_pred -------------------CceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 236 -------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 236 -------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
....+|+||++.....+....+...+..+. ....||.||..
T Consensus 537 ~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp CSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred CCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 224688999998765555555665554321 23457777764
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.75 E-value=0.0025 Score=67.14 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+.+.++|++|+|||+||+++++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999987643
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.62 E-value=0.0089 Score=72.11 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=72.7
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccc-------------------c----C--
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-------------------N----S-- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~-------------------~----~-- 235 (945)
..++|++.+++.+...+.... ..-+.++|++|+|||++|+.+++.... . +
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-----~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~ 254 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CT
T ss_pred CCccCchHHHHHHHHHHhCCC-----CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHH
Confidence 469999999999999987532 223679999999999999998876410 0 0
Q ss_pred -----------CceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHH------HhcCCCceeeeCCCCCh
Q 002265 236 -----------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVAR------MMGTTELDIISIEQLAE 298 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~------~~~~~~~~~~~l~~l~~ 298 (945)
.+..+|++|.- .+....+...+. ....++|.||....... .+... ...+.+.+.+.
T Consensus 255 ~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR-f~~i~v~~p~~ 327 (758)
T 3pxi_A 255 RLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR-FQPIQVDQPSV 327 (758)
T ss_dssp THHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS-EEEEECCCCCH
T ss_pred HHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh-CcEEEeCCCCH
Confidence 34678889921 111122322222 12345666665443111 11111 23799999999
Q ss_pred HHHHHHHHHHh
Q 002265 299 EECWSLFERLV 309 (945)
Q Consensus 299 ~~~~~lf~~~~ 309 (945)
++..+++....
T Consensus 328 ~~~~~il~~~~ 338 (758)
T 3pxi_A 328 DESIQILQGLR 338 (758)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.55 E-value=0.0028 Score=72.87 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=73.0
Q ss_pred CceecchhHHHHHHHHHhccc-cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESS-EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~-~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------------ 235 (945)
.+++|.+...+.+.+.+.-.. ........+.++|++|+||||||+.++......+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 458888887777655443211 0011345899999999999999999876432110
Q ss_pred -------------CceEEEEEcCccCCCcC----ChhhHHhhccCCC---------------CCcEEEEEcCchH-----
Q 002265 236 -------------RKKIFLVLDDVWDGNCN----KWEPFFRCLKNDL---------------HGGKILVTTRNVS----- 278 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~~~----~~~~l~~~~~~~~---------------~gs~iiiTtr~~~----- 278 (945)
...-+++||++.....+ ....+...+.... ....||.||....
T Consensus 161 ~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~a 240 (543)
T 3m6a_A 161 MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGP 240 (543)
T ss_dssp ---CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHH
T ss_pred CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHH
Confidence 13348889999764322 1233333332110 2346676766532
Q ss_pred HHHHhcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 279 VARMMGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 279 ~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
+...+ .++.+.+++.++-.+++..+.
T Consensus 241 L~~R~-----~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 241 LRDRM-----EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHE-----EEEECCCCCHHHHHHHHHHTH
T ss_pred HHhhc-----ceeeeCCCCHHHHHHHHHHHH
Confidence 22222 268899999998888887654
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.51 E-value=0.0057 Score=74.76 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=63.8
Q ss_pred CceecchhHHHHHHHHHhcccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccc---cC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---NS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~---~~------------------ 235 (945)
..++|.+..++.+...+..... .+.....+.|+|+.|+|||++|+.+++.... .+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~ 637 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 637 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHc
Confidence 3579999988888877754221 1123468999999999999999998765311 00
Q ss_pred ---------------------CceEEEEEcCccCCCcCChhhHHhhccCCC-----------CCcEEEEEcCc
Q 002265 236 ---------------------RKKIFLVLDDVWDGNCNKWEPFFRCLKNDL-----------HGGKILVTTRN 276 (945)
Q Consensus 236 ---------------------~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTtr~ 276 (945)
...-+|+||++.....+....+...+..+. .+..||+||..
T Consensus 638 g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 638 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp -------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred CCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 113489999998765555556666665331 24457788764
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.0084 Score=71.13 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=88.3
Q ss_pred CceecchhHHHHHHHHHhc----cc----cCCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCE----SS----EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~----~~----~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.++.|.++.+++|.+.+.- .. -+-...+-|-++|++|+|||+||+++++.....+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese 283 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHH
Confidence 4688999888888776531 11 0112356789999999999999999998754332
Q ss_pred ------------CceEEEEEcCccCCC------cCCh-h----hHHhhccCC--CCCcEEEEEcCchHHHH-HhcC--CC
Q 002265 236 ------------RKKIFLVLDDVWDGN------CNKW-E----PFFRCLKND--LHGGKILVTTRNVSVAR-MMGT--TE 287 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~------~~~~-~----~l~~~~~~~--~~gs~iiiTtr~~~~~~-~~~~--~~ 287 (945)
....+|++|+++..- .... . .+...+... ..+-.||.||...+... .+.. .-
T Consensus 284 ~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRF 363 (806)
T 3cf2_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (806)
T ss_dssp HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSS
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCccc
Confidence 567899999996421 0111 1 122111111 12334555665543222 2211 12
Q ss_pred ceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHcCCCh
Q 002265 288 LDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIARNCKGLP 336 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 336 (945)
...+++...+.++-.++|..+.-... .....+ ...+++.+.|.-
T Consensus 364 d~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 364 DREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 34789999999999999887653211 111112 345677777654
No 237
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.46 E-value=0.0099 Score=61.71 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=73.6
Q ss_pred CceecchhHHHHHHHHHhcccc---------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE---------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~---------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
.++.|.++.++++.+.+...-. -..... +.++|++|+||||||+.++......+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~ 88 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHH
Confidence 4688888888877765421100 001112 99999999999999999986533111
Q ss_pred -------------CceEEEEEcCccCCCc-----------CChhhHHhhccCC--CCCcEEEEEcCchHHHHHh-c--CC
Q 002265 236 -------------RKKIFLVLDDVWDGNC-----------NKWEPFFRCLKND--LHGGKILVTTRNVSVARMM-G--TT 286 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~~-----------~~~~~l~~~~~~~--~~gs~iiiTtr~~~~~~~~-~--~~ 286 (945)
....++++|++..... .....+...+..+ ....-++.+|...++.... . ..
T Consensus 89 ~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gR 168 (274)
T 2x8a_A 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGR 168 (274)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTS
T ss_pred HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCccc
Confidence 2457899999964210 0011122222222 1233455666665543321 1 11
Q ss_pred CceeeeCCCCChHHHHHHHHHHh
Q 002265 287 ELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 287 ~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
-+..+.+...+.++-.++|....
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHH
Confidence 23478899999999888988765
No 238
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.36 E-value=0.011 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999988754
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.31 E-value=0.0072 Score=62.13 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=71.3
Q ss_pred CceecchhHHHHHHHHHhccccC-------CCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ-------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+....++.+....-... -.-.+-+.|+|+.|+||||||+.++.......
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 95 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 95 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHH
Confidence 46888887666655443210000 00011289999999999999999887533111
Q ss_pred -----------CceEEEEEcCccCCC----------cCC----hhhHHhhccCCC--CCcEEEEEcCchHHHHH-hcC--
Q 002265 236 -----------RKKIFLVLDDVWDGN----------CNK----WEPFFRCLKNDL--HGGKILVTTRNVSVARM-MGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~----------~~~----~~~l~~~~~~~~--~gs~iiiTtr~~~~~~~-~~~-- 285 (945)
....++++|++.... ... ...+...+.... ....++.||....+... ...
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 175 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCC
Confidence 234789999994210 001 112222232222 22244456665544322 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHHh
Q 002265 286 TELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.-+..+.+...+.++-.+++..++
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHH
T ss_pred cCCeEEeeCCcCHHHHHHHHHHHH
Confidence 123478899999888888887665
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.30 E-value=0.0018 Score=68.60 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 187 VDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...++.+.+++..... .....+.|+|+.|+|||+||+++++...
T Consensus 134 ~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344455566654221 1245788999999999999998887543
No 241
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.27 E-value=0.0052 Score=66.64 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=32.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|.+..+..+........ ..-+-|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~-----~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG-----IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG-----GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC-----CceEEEECCCCccHHHHHHHHHHhC
Confidence 458999886655444333221 1238899999999999999988654
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.16 E-value=0.028 Score=61.54 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=6.8
Q ss_pred HHhccCCccceEe
Q 002265 543 ELFSKLVCLRALV 555 (945)
Q Consensus 543 ~~~~~l~~Lr~L~ 555 (945)
.+|.++.+|+.+.
T Consensus 63 ~aF~~C~~L~~I~ 75 (379)
T 4h09_A 63 ANFNSCYNMTKVT 75 (379)
T ss_dssp TTTTTCTTCCEEE
T ss_pred HHhhCCCCCCEEE
Confidence 3455555555555
No 243
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.11 E-value=0.0011 Score=64.12 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=35.2
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccccc----------C-----CceEEEEEcCccC
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVN----------S-----RKKIFLVLDDVWD 248 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~----------~-----~~~~LlvlDdv~~ 248 (945)
+..+..++.. .+..+.+.|+|++|+||||+|..+++....+ + ...-+++|||+..
T Consensus 45 ~~~l~~~~~~----iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~ 114 (212)
T 1tue_A 45 LGALKSFLKG----TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATT 114 (212)
T ss_dssp HHHHHHHHHT----CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECH
T ss_pred HHHHHHHHhc----CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCc
Confidence 4445555542 1223469999999999999988877653211 0 1233889999853
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.05 E-value=0.018 Score=64.70 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=74.4
Q ss_pred CceecchhHHHHHHHHHh---cccc----CCCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLC---ESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~---~~~~----~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..+.++.+... .... .-.-.+-+.|+|++|+||||||++++......+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~ 110 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 110 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHH
Confidence 568999887766655442 1100 000112389999999999999999987543111
Q ss_pred -----------CceEEEEEcCccCCCc----------CCh----hhHHhhccCC--CCCcEEEEEcCchHHHHH-hcC--
Q 002265 236 -----------RKKIFLVLDDVWDGNC----------NKW----EPFFRCLKND--LHGGKILVTTRNVSVARM-MGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~~----------~~~----~~l~~~~~~~--~~gs~iiiTtr~~~~~~~-~~~-- 285 (945)
....++++|++..... +.+ ..+...+... ..+..|+.||...++... +-.
T Consensus 111 ~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~g 190 (499)
T 2dhr_A 111 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 190 (499)
T ss_dssp HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTT
T ss_pred HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCccccccc
Confidence 1237899999954211 011 2233223222 223455556666554321 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHHh
Q 002265 286 TELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.-+..+.+...+.++-.+++..++
T Consensus 191 Rfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 191 RFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccceEEecCCCCHHHHHHHHHHHH
Confidence 113478899999998888887765
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.86 E-value=0.011 Score=61.58 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=70.7
Q ss_pred CceecchhHHHHHHHHHhccccC-------CCCeEEEEEEecCCCcHHHHHHHHhccccccC------------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQ-------QKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS------------------ 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~------------------ 235 (945)
.+++|.+..++++.+....-... -.-.+-+.|+|+.|+||||||+.++.......
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHH
Confidence 46889887766665543211000 00011289999999999999999887532111
Q ss_pred -----------CceEEEEEcCccCCC----------cCChh----hHHhhccCCC--CCcEEEEEcCchHHHHH-hcC--
Q 002265 236 -----------RKKIFLVLDDVWDGN----------CNKWE----PFFRCLKNDL--HGGKILVTTRNVSVARM-MGT-- 285 (945)
Q Consensus 236 -----------~~~~LlvlDdv~~~~----------~~~~~----~l~~~~~~~~--~gs~iiiTtr~~~~~~~-~~~-- 285 (945)
....++|+|++.... ...+. .+...+.... ....++.||....+... ...
T Consensus 120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~ 199 (278)
T 1iy2_A 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 199 (278)
T ss_dssp HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTT
T ss_pred HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCC
Confidence 234789999994210 00111 2222222221 12234445555443221 111
Q ss_pred CCceeeeCCCCChHHHHHHHHHHh
Q 002265 286 TELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 286 ~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.-+..+.+...+.++-.+++..++
T Consensus 200 rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 200 RFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHH
Confidence 113478899999888888887665
No 246
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.76 E-value=0.055 Score=59.17 Aligned_cols=80 Identities=6% Similarity=0.124 Sum_probs=50.6
Q ss_pred hccCCccceEeeccccccccccccCCCcccccCc-cccccCcccccccccccccccCh-hhhcCCcccEEEecCCCCccc
Q 002265 545 FSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPK-NVRKLIHLKYLNLSELGIEILPE-TLCELYNLQKLDIRRCRNLRE 622 (945)
Q Consensus 545 ~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ 622 (945)
+....+|+.+. +. ..+..|++ .|.++.+|+.+.|..+ ++.++. .+.++ +|+.+.+-. .+..
T Consensus 42 ~~~~~~i~~v~------------ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~ 104 (379)
T 4h09_A 42 YKDRDRISEVR------------VN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKK 104 (379)
T ss_dssp GGGGGGCSEEE------------EC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCE
T ss_pred cccccCCEEEE------------eC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeE
Confidence 45556777776 32 34566654 4778889999998754 555543 45554 677777654 3666
Q ss_pred cCcccccccCCCeeecCCC
Q 002265 623 LPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 623 lP~~i~~L~~L~~L~l~~~ 641 (945)
++.......+|+.+.+..+
T Consensus 105 I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 105 FGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp ECTTTTTTCCCSEEECCTT
T ss_pred eccceeccCCcccccCCCc
Confidence 6665545557887777543
No 247
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.72 E-value=0.0062 Score=68.55 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=36.6
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+++|.+..++.+..++..-..+....+-+.++|++|+|||++|+++++...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 6799999887765544432111111234688999999999999999988754
No 248
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.62 E-value=0.049 Score=55.29 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=64.2
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc---------cccC-----CceEEEEEcCccCCCcCChhh
Q 002265 191 NELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND---------EVNS-----RKKIFLVLDDVWDGNCNKWEP 256 (945)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~---------~~~~-----~~~~LlvlDdv~~~~~~~~~~ 256 (945)
..+..|+.... +...-|.++|++|+|||++|.++++.. ...+ ..+.+++.|++.-.. +..+.
T Consensus 91 ~~l~~~l~~~~---~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~~~~-d~~~~ 166 (267)
T 1u0j_A 91 SVFLGWATKKF---GKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTA-KVVES 166 (267)
T ss_dssp HHHHHHHTTCS---TTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCEET-TTHHH
T ss_pred HHHHHHHhCCC---CCCcEEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEeccccchh-HHHHH
Confidence 34556665421 234569999999999999999998742 0111 345566666664322 22233
Q ss_pred HHhhcc--------CCC-----CCcEEEEEcCc------------hHHHHHhcCCCceeeeCC--------CCChHHHHH
Q 002265 257 FFRCLK--------NDL-----HGGKILVTTRN------------VSVARMMGTTELDIISIE--------QLAEEECWS 303 (945)
Q Consensus 257 l~~~~~--------~~~-----~gs~iiiTtr~------------~~~~~~~~~~~~~~~~l~--------~l~~~~~~~ 303 (945)
+...+. ... +...+||||.. ......+... ...++.. ++++++...
T Consensus 167 lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR-~~~f~F~~~~p~~~~~lt~~~~~~ 245 (267)
T 1u0j_A 167 AKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDR-MFKFELTRRLDHDFGKVTKQEVKD 245 (267)
T ss_dssp HHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTT-EEEEECCSCCCTTSCCCCHHHHHH
T ss_pred HHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhh-EEEEECCCcCCcccCCCCHHHHHH
Confidence 333332 111 45579999987 2222223222 2355555 788888888
Q ss_pred HHHHH
Q 002265 304 LFERL 308 (945)
Q Consensus 304 lf~~~ 308 (945)
.|...
T Consensus 246 f~~w~ 250 (267)
T 1u0j_A 246 FFRWA 250 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88743
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.58 E-value=0.021 Score=68.79 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=77.3
Q ss_pred CceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC-----------------
Q 002265 181 GEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS----------------- 235 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------- 235 (945)
.+++|.+..++++.+++...-. .-.....|.|+|++|+||||||+.+++.....+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~ 283 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHH
Confidence 4689999999888887753100 012345699999999999999999987643211
Q ss_pred ------------CceEEEEEcCccCCCc------CC-----hhhHHhhccCC--CCCcEEEEEcCchHHHH-HhcC--CC
Q 002265 236 ------------RKKIFLVLDDVWDGNC------NK-----WEPFFRCLKND--LHGGKILVTTRNVSVAR-MMGT--TE 287 (945)
Q Consensus 236 ------------~~~~LlvlDdv~~~~~------~~-----~~~l~~~~~~~--~~gs~iiiTtr~~~~~~-~~~~--~~ 287 (945)
....++++|++..... .. ...+...+... ..+..||.||....... .+.. .-
T Consensus 284 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf 363 (806)
T 1ypw_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (806)
T ss_dssp HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccc
Confidence 3457999999954211 00 11222222221 23345666666543221 1111 11
Q ss_pred ceeeeCCCCChHHHHHHHHHHh
Q 002265 288 LDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
...+.+...+.++-.+++...+
T Consensus 364 ~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 364 DREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEECCCCCCHHHHHHHHHHTT
T ss_pred ccccccCCCCHHHHHHHHHHHH
Confidence 2357888888898888887665
No 250
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.04 E-value=0.013 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=29.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++.+||+|.|=|||||||.|..+.-.... .++|+|+|
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 36799999999999999999877665554 36777766
No 251
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.96 E-value=0.03 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=18.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999955543
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.86 E-value=0.031 Score=54.93 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 186 RVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
|++.++.+.+.+.... .....+|+|.|..|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~--~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK--TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSC--CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5566777777776432 23457999999999999999999887543
No 253
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.76 E-value=0.035 Score=64.85 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=35.1
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|.+..++.+...+... ..+.|+|+.|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888777776532 37999999999999999998764
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.41 E-value=0.039 Score=60.99 Aligned_cols=42 Identities=31% Similarity=0.355 Sum_probs=33.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
..++|.++|.+|+||||+|..+........++++++|==|..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 468999999999999999999988777654778877644553
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.28 E-value=0.024 Score=59.97 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=29.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
...++|+|+|-||+||||+|..+....... ++|+++|
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEE
Confidence 457899999999999999999888776654 6777766
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.20 E-value=0.035 Score=54.88 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
-+++|.+.+... ...-.+|+|+|..|.|||||++.+...........-.+-+|+.
T Consensus 7 ~~~~~~~~~~~~---~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 7 LCQGVLERLDPR---QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp HHHHHHHHSCTT---CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred HHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 344555555432 2346799999999999999999998765532112233445544
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.07 E-value=0.22 Score=53.50 Aligned_cols=130 Identities=8% Similarity=-0.096 Sum_probs=86.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc-----c-----------------------cCCceEEEEEcCccC-CCcCChhhH
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE-----V-----------------------NSRKKIFLVLDDVWD-GNCNKWEPF 257 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~-----~-----------------------~~~~~~LlvlDdv~~-~~~~~~~~l 257 (945)
.++.-++|..|.||++.|+.+.+... . -++++-++|+|++.. .....++.+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aL 97 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQL 97 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHH
Confidence 45777888888888887766644211 0 016677888899876 445667778
Q ss_pred HhhccCCCCCcEEEEEcCc-------hHHHHHhcCCCceeeeCCCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHHHH
Q 002265 258 FRCLKNDLHGGKILVTTRN-------VSVARMMGTTELDIISIEQLAEEECWSLFERLVFFDRSSEDREKLESIGRKIAR 330 (945)
Q Consensus 258 ~~~~~~~~~gs~iiiTtr~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 330 (945)
...+....+++.+|++|.. ..+...+... ..+++..+++.++..+.+...+-....... .+.+..+++
T Consensus 98 l~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr-~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~ 172 (343)
T 1jr3_D 98 LTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR-SVQVTCQTPEQAQLPRWVAARAKQLNLELD----DAANQVLCY 172 (343)
T ss_dssp HHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT-CEEEEECCCCTTHHHHHHHHHHHHTTCEEC----HHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Confidence 8888766678887776643 2455554433 358999999999988887776632221112 345677888
Q ss_pred HcCCChhHHHH
Q 002265 331 NCKGLPLAAKV 341 (945)
Q Consensus 331 ~c~glPLai~~ 341 (945)
.++|-+.++..
T Consensus 173 ~~~gdl~~~~~ 183 (343)
T 1jr3_D 173 CYEGNLLALAQ 183 (343)
T ss_dssp SSTTCHHHHHH
T ss_pred HhchHHHHHHH
Confidence 89987776654
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.05 E-value=0.024 Score=54.15 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHH
Q 002265 209 VISLVGLGGIGKTTLAQLA 227 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~ 227 (945)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.03 E-value=0.028 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999876
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.96 E-value=0.036 Score=58.05 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=33.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
..+++++|.+|+||||++..+........++++++|=-|..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 45899999999999999999988776555678777755553
No 261
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.92 E-value=0.047 Score=56.95 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++++..+...........+|.|.|++|+||||+|+.+....
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444332223346789999999999999999997654
No 262
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.028 Score=65.20 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=45.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccC----------------------------------CceEEEEEcCccCCCcCCh
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVNS----------------------------------RKKIFLVLDDVWDGNCNKW 254 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~~----------------------------------~~~~LlvlDdv~~~~~~~~ 254 (945)
-|-++|++|+|||+||+.+++...... ...-++++|+++....+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 488999999999999999887542100 1134789999987765555
Q ss_pred hhHHhhccCC-------------CCCcEEEEEcCc
Q 002265 255 EPFFRCLKND-------------LHGGKILVTTRN 276 (945)
Q Consensus 255 ~~l~~~~~~~-------------~~gs~iiiTtr~ 276 (945)
..+...+..+ .....||.||..
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECC
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCC
Confidence 5666555432 134567777764
No 263
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.74 E-value=0.065 Score=56.44 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=33.0
Q ss_pred ecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 184 CGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 184 vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|....+..+...+.... ......+|||.|..|+||||+|+.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~-~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP-EPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC-CCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccC-CCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455555555454432 134577999999999999999999876544
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.73 E-value=0.029 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999988653
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.68 E-value=0.028 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.093 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999987643
No 266
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.66 E-value=0.044 Score=61.72 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=36.0
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+.++|++..++.+...+... .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHHH
Confidence 45889999888888777643 258899999999999999998754
No 267
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.62 E-value=0.049 Score=56.04 Aligned_cols=40 Identities=30% Similarity=0.239 Sum_probs=30.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
....++.+.|.||+||||++..+..... .++++++|=-|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 3467899999999999999999987766 456776553243
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.60 E-value=0.061 Score=57.01 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=33.7
Q ss_pred ecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 184 CGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 184 vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
|+.+.-.+++++.+...-. .+....|.|+|+.|+||||+++.++....
T Consensus 2 ~~~~~L~~~il~~l~~~i~-~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE-DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT-TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc-cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4445556667666643221 23466799999999999999998877544
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.55 E-value=0.036 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
|.|.|.|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999987653
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.49 E-value=0.037 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 271
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.46 E-value=0.033 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.43 E-value=0.031 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|.|+|+.|+||||+|+.+....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998755
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.37 E-value=0.066 Score=55.78 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
....+|+|.|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999988776543
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.30 E-value=0.032 Score=53.22 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987543
No 275
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.26 E-value=0.042 Score=58.54 Aligned_cols=37 Identities=19% Similarity=-0.012 Sum_probs=26.7
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 191 NELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-++++.+..-. .-+.++|+|..|+|||||++.+.+..
T Consensus 162 iraID~~~pi~----rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 162 ARVLDLASPIG----RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHHSCCB----TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeeeeeeeec----CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34555555422 23589999999999999999887654
No 276
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.25 E-value=0.054 Score=55.37 Aligned_cols=43 Identities=26% Similarity=0.255 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 189 EKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+.++..+...........+|.+.|++|+||||+|+.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444444444332223446789999999999999999998754
No 277
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.24 E-value=0.052 Score=56.09 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=27.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|.|-||+||||+|..+...... .++|+++|
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~-~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA-MGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH-CCCcEEEE
Confidence 57888999999999999988877663 36787766
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.16 E-value=0.045 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998653
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.13 E-value=0.036 Score=53.57 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+.|.|+|+.|+||||+|+.+....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998754
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.10 E-value=0.045 Score=53.67 Aligned_cols=27 Identities=37% Similarity=0.257 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.-.+|+|.|+.|+||||+|+.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999988765
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.06 E-value=0.05 Score=51.96 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999987653
No 282
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.05 E-value=0.056 Score=56.55 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=28.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
.++|+|.|-||+||||+|..+....... ++|+|+|
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~-G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEE
Confidence 3688889999999999999888776643 6787766
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.00 E-value=0.051 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999975
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.97 E-value=0.048 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987654
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.96 E-value=0.041 Score=52.17 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..++|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999999987543
No 286
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.94 E-value=0.058 Score=52.15 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=32.7
Q ss_pred HHHhccCCccceEeeccccccccccccCCCcccccCccccccCccccccccccccc-----ccChhhhcCCcccEEEecC
Q 002265 542 SELFSKLVCLRALVIRQSSLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE-----ILPETLCELYNLQKLDIRR 616 (945)
Q Consensus 542 ~~~~~~l~~Lr~L~l~~~~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~ 616 (945)
.+.+..-+.|+.|+|++|.+ .......|.+.+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++
T Consensus 63 a~aL~~N~~L~~L~L~~n~i-------gd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAI-------SDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCC-------BHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCCcCEEEccCCCC-------ChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 33445556666666333331 11111223333444455666666666654 2333343344566666654
Q ss_pred C
Q 002265 617 C 617 (945)
Q Consensus 617 ~ 617 (945)
|
T Consensus 136 ~ 136 (197)
T 1pgv_A 136 Q 136 (197)
T ss_dssp C
T ss_pred C
Confidence 4
No 287
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.91 E-value=0.11 Score=46.79 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=31.1
Q ss_pred cCCCccc--ccCccccccCcccccccccccccccChh-hhcCCcccEEEecCCC
Q 002265 568 LDPNSIR--EIPKNVRKLIHLKYLNLSELGIEILPET-LCELYNLQKLDIRRCR 618 (945)
Q Consensus 568 l~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 618 (945)
.++..+. .+|..+ ..+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 15 Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 15 CGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred eCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555565 666543 23577777777777776654 4566777777777664
No 288
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.90 E-value=0.15 Score=60.56 Aligned_cols=128 Identities=18% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCceecchhHHHHHHHHHhcccc--------CCCCeEEEEEEecCCCcHHHHHHHHhccccccC----------------
Q 002265 180 EGEVCGRVDEKNELLSKLCESSE--------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNS---------------- 235 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~--------~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~---------------- 235 (945)
-.++.|.++..+++.+.+.-... +-...+-|.++|++|.|||.+|+++++.....+
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes 555 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchH
Confidence 35677888888877766532110 012234578999999999999999998765433
Q ss_pred -------------CceEEEEEcCccCCCc----------CC----hhhHHhhccCCC--CCcEEEEEcCchH-----HHH
Q 002265 236 -------------RKKIFLVLDDVWDGNC----------NK----WEPFFRCLKNDL--HGGKILVTTRNVS-----VAR 281 (945)
Q Consensus 236 -------------~~~~LlvlDdv~~~~~----------~~----~~~l~~~~~~~~--~gs~iiiTtr~~~-----~~~ 281 (945)
....+|++|+++..-. .. ...+...+.... .+--||-||...+ +.+
T Consensus 556 e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllR 635 (806)
T 3cf2_A 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHS
T ss_pred HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcC
Confidence 4678999999954210 01 112222222222 2223333554332 222
Q ss_pred HhcCCCceeeeCCCCChHHHHHHHHHHh
Q 002265 282 MMGTTELDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 282 ~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
.-.- +..+.+...+.++-.++|+.+.
T Consensus 636 pgRf--d~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 636 PGRL--DQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp TTTS--CCEEEC-----CHHHHTTTTTS
T ss_pred CCcc--eEEEEECCcCHHHHHHHHHHHh
Confidence 1112 3477887777777777776554
No 289
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.87 E-value=0.061 Score=58.38 Aligned_cols=50 Identities=28% Similarity=0.250 Sum_probs=35.7
Q ss_pred ceecchhHHHHHHHHHhcc----------ccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 182 EVCGRVDEKNELLSKLCES----------SEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~----------~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.++|.+..++.+...+... .........|.++|++|+|||++|+++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4789888888887777210 0001123568999999999999999998754
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.80 E-value=0.065 Score=56.69 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=31.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
..++|+|+|.+|+||||++..++..... .+++++++=-|.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4579999999999999999999877664 367777663344
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.77 E-value=0.054 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987664
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.75 E-value=0.053 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998753
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.71 E-value=0.051 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987543
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.71 E-value=0.066 Score=52.77 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998754
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.70 E-value=0.041 Score=54.05 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|+|.|+.|+||||+|+.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.68 E-value=0.041 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998654
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.65 E-value=0.056 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+|+|.|+.|+||||+++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998754
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.62 E-value=0.069 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997654
No 299
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.60 E-value=0.066 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
...+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999999875
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.60 E-value=0.056 Score=53.15 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 002265 209 VISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~ 229 (945)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 301
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.56 E-value=0.066 Score=52.93 Aligned_cols=27 Identities=37% Similarity=0.277 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...+|+|.|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999887543
No 302
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.56 E-value=0.084 Score=53.56 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=29.6
Q ss_pred CeEEEEEEe-cCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVG-LGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G-~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..++|+|++ -||+||||+|..+........++|+|+|
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 357888885 6999999999999887776557788766
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.53 E-value=0.073 Score=50.17 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=24.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
..++++|.|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999998876543
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.52 E-value=0.057 Score=52.37 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987544
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.49 E-value=0.053 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+++|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998754
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.48 E-value=0.042 Score=52.85 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.++|.|+|+.|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998654
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.45 E-value=0.058 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999987654
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.40 E-value=0.069 Score=52.58 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 309
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.39 E-value=0.14 Score=57.60 Aligned_cols=43 Identities=30% Similarity=0.292 Sum_probs=33.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD 248 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~ 248 (945)
...++|+|+|.+|+||||++..+....... ++++++|=.|...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccc
Confidence 347799999999999999999998776643 6788888666643
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.37 E-value=0.069 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.34 E-value=0.058 Score=52.16 Aligned_cols=28 Identities=36% Similarity=0.274 Sum_probs=24.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.-.+|.|.|+.|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999887654
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.23 E-value=0.064 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998764
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.21 E-value=0.066 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999875
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.21 E-value=0.053 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|.|.|++|+||||+|+.+.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987543
No 315
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.19 E-value=0.18 Score=54.41 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=33.5
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
...+...+... .....+|+|+|.+|+|||||+..+....... ++++.++
T Consensus 65 ~~~~~~~~~~~---~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi 113 (355)
T 3p32_A 65 AQQLLLRLLPD---SGNAHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVL 113 (355)
T ss_dssp HHHHHHHHGGG---CCCSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred HHHHHHHhHhh---cCCceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEE
Confidence 44455555432 2357899999999999999999987765433 4555444
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.19 E-value=0.049 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..++|+|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999997654
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.11 E-value=0.067 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997654
No 318
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.09 E-value=0.083 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+++|.|+.|.|||||++.+....
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.08 E-value=0.07 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999987654
No 320
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.06 E-value=0.055 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999987643
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.01 E-value=0.081 Score=55.48 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=27.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..+++|+|++|+||||+++.+....... +++++++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 4589999999999999999998776543 4455443
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.00 E-value=0.078 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..|++.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998654
No 323
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.00 E-value=0.064 Score=51.88 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=59.5
Q ss_pred hhhHHHhccCCccceEeeccc-cccccccccCCCcccccCccccccCccccccccccccc-----ccChhhhcCCcccEE
Q 002265 539 SILSELFSKLVCLRALVIRQS-SLYFHPFHLDPNSIREIPKNVRKLIHLKYLNLSELGIE-----ILPETLCELYNLQKL 612 (945)
Q Consensus 539 ~~~~~~~~~l~~Lr~L~l~~~-~~~~~~l~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L 612 (945)
..+...+.+-+.|+.|+|+++ . +.......|.+.+..-.+|+.|+|++|.|. .+-+.+..-+.|++|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~-------igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKR-------VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL 103 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCS-------SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE
T ss_pred HHHHHHHhcCCCccEEECCCCCC-------CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE
Confidence 445566677788999995543 2 222223344555666778999999998876 344555566788888
Q ss_pred EecCCCCcc-----ccCcccccccCCCeeecCCC
Q 002265 613 DIRRCRNLR-----ELPAGIGKLMNMRSLLNGET 641 (945)
Q Consensus 613 ~L~~~~~l~-----~lP~~i~~L~~L~~L~l~~~ 641 (945)
+|++|. +. .+-..+..-+.|++|+|+++
T Consensus 104 ~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 104 NVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 888877 32 22223344455777777654
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.80 E-value=0.09 Score=55.39 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...+|||.|..|+|||||++.+.....
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 457999999999999999999887554
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.80 E-value=0.076 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 326
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.80 E-value=0.17 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999876644
No 327
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.78 E-value=0.083 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997754
No 328
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.78 E-value=0.084 Score=53.90 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...+|+|.|+.|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999977544
No 329
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.77 E-value=0.17 Score=54.93 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCCeEEEEEEe-cCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 204 QKGLHVISLVG-LGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 204 ~~~~~vi~i~G-~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+...++|+|+| -||+||||+|..++...... ++|+|+|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~-g~rVlli 178 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANM-GKKVFYL 178 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH-TCCEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhC-CCCEEEE
Confidence 34678999985 99999999999888776554 6777665
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.77 E-value=0.08 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|+|+|+.|+|||||++.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.75 E-value=0.077 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
No 332
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.75 E-value=0.45 Score=51.86 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=32.8
Q ss_pred ceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 182 EVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 182 ~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.++|....+.++.+.+..-.. .+.. |-|.|..|+|||++|+.++..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~--~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC--AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT--CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC--CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 466766677777766654221 2333 489999999999999998764
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.74 E-value=0.062 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987543
No 334
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.73 E-value=0.11 Score=51.23 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=25.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
-.|.+.|.||+||||+|..+....... +++++++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEE
Confidence 347889999999999998888776544 5565444
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.72 E-value=0.081 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987543
No 336
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.70 E-value=0.25 Score=53.42 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=33.2
Q ss_pred CceecchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 181 GEVCGRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..++|....+.++...+..-.. .. ..|.|+|.+|+||+++|+.++..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~--~~-~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK--SK-APVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT--SC-SCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc--cc-hhheEEeCCCchHHHHHHHHHHh
Confidence 4578887777776665543221 12 23679999999999999998864
No 337
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.70 E-value=0.085 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|+|+.|+|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999988754
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.67 E-value=0.1 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999999875
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.64 E-value=0.083 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999987654
No 340
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.61 E-value=0.082 Score=51.28 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
-++++|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999998764
No 341
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.57 E-value=0.098 Score=55.64 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=28.3
Q ss_pred HHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 190 KNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
--++++.+..-. .-+.++|+|.+|+|||+|+..+.+..
T Consensus 162 GiraID~l~Pig----rGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 162 STRLIDLFAPIG----KGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHHSCCB----TTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cchhhhhccccc----CCceEEEecCCCCChhHHHHHHHHHH
Confidence 346667776432 23578999999999999998888753
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.57 E-value=0.091 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.55 E-value=0.13 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|+|.|+.|+||||+|+.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 344
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.53 E-value=0.098 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.283 Sum_probs=27.4
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+ +-||+||||+|..+...... .++|+++|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR-SGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEE
Confidence 578888 68999999999998887765 46777665
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.52 E-value=0.13 Score=54.21 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...+|||.|..|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987544
No 346
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.44 E-value=0.11 Score=54.25 Aligned_cols=35 Identities=34% Similarity=0.296 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
.++++++|.+|+||||++..++...... +++++++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 3689999999999999999998776543 5666554
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.42 E-value=0.09 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998754
No 348
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.40 E-value=0.17 Score=45.42 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=42.7
Q ss_pred ccccccccccc--ccChhhhcCCcccEEEecCCCCccccCcc-cccccCCCeeecCCCC
Q 002265 587 KYLNLSELGIE--ILPETLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRSLLNGETY 642 (945)
Q Consensus 587 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 642 (945)
..++.+++.++ .+|..+ -.+|++|+|++|. +..+|.+ +..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 36788888888 888754 3579999999988 8888875 4678999999999873
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.39 E-value=0.091 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.39 E-value=0.076 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+|.|.|+.|+||||+|+.+....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.38 E-value=0.11 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..+|||.|..|+|||||++.+....
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987753
No 352
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.38 E-value=0.1 Score=55.78 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=30.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccc-cCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEV-NSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~-~~~~~~Llv 242 (945)
..+++.+.|-||+||||+|..+...... ..++|+|+|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4678899999999999999998877663 457777766
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.37 E-value=0.068 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=17.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999976543
No 354
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.25 E-value=0.16 Score=53.29 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=29.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
...+++|+|.+|+||||++..++...... +++++++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999998776543 5666654
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.23 E-value=0.099 Score=53.36 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+|+|.|+.|+||||+++.+....
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998543
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.14 E-value=0.087 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999988754
No 357
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.05 E-value=0.12 Score=51.18 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 205 KGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 205 ~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
...++|.|.|++|+||||.|+.+.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4678999999999999999999987653
No 358
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.05 E-value=0.12 Score=49.56 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998754
No 359
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.98 E-value=0.13 Score=53.99 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceE
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKI 239 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~ 239 (945)
.+++|.|.+|+|||||++.++.......+.++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999998876554433333
No 360
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.98 E-value=0.065 Score=59.21 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=31.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVW 247 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~ 247 (945)
..+|+|+|.+|+||||+|..+....... ++++++|=-|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecccc
Confidence 5689999999999999999988876643 677776644543
No 361
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.97 E-value=0.13 Score=53.36 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHh
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAY 228 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~ 228 (945)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.88 E-value=0.24 Score=49.12 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHhccccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 185 GRVDEKNELLSKLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+.++..+.+...+.. ....+|+|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRE-----SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHH-----HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcc-----cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 334445555555432 2568999999999999999999887653
No 363
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.87 E-value=0.12 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
-.+++|+|+.|+|||||++.+...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999763
No 364
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.87 E-value=0.28 Score=51.86 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=30.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...+++|+|+.|+||||+++.+....... +++++++=-|+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~ 167 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDT 167 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecc
Confidence 46799999999999999999998766543 44555543344
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.87 E-value=0.12 Score=51.43 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999987653
No 366
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.84 E-value=0.11 Score=52.90 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=26.0
Q ss_pred EEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 210 ISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 210 i~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
|+|.|-||+||||+|..+....... ++|+|+|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~-g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD-YDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT-CSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 6679999999999999988877644 5777666
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.84 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998754
No 368
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.84 E-value=0.13 Score=56.75 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.++|+|..|+|||||++.+..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 5899999999999999876654
No 369
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.81 E-value=0.14 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.093 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
-.++.|+|.+|+||||||..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.75 E-value=0.12 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987544
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.74 E-value=0.11 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 372
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.71 E-value=0.1 Score=50.44 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+++|+|+.|+|||||++.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988766
No 373
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.70 E-value=0.15 Score=54.65 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=27.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFL 241 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Ll 241 (945)
...+++|+|+.|+||||+++.++...... ++++++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35799999999999999999998876543 344443
No 374
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.70 E-value=0.19 Score=50.04 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=28.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...+|+|+|.+|+|||||+..+....... .+.-+|-+|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEET
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCC
Confidence 46789999999999999999988764332 3444444443
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.62 E-value=0.11 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997654
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.61 E-value=0.12 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.61 E-value=0.12 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997754
No 378
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.45 E-value=0.13 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999876543
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.45 E-value=0.13 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..|+|.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998865
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.43 E-value=0.17 Score=52.90 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=27.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFL 241 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Ll 241 (945)
.-.+++|+|+.|+||||+++.++...... ++++++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 34699999999999999999998766543 344443
No 381
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.42 E-value=0.13 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999998874
No 382
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.42 E-value=0.12 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987543
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.33 E-value=0.14 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.208 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+|.|.|+.|+||||+|+.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999987655
No 384
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.32 E-value=0.13 Score=54.28 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=27.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.+|+|.|+.|+||||||+.++.... -.+|-.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 5899999999999999999988654 235556665
No 385
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.32 E-value=0.13 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999886554
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.29 E-value=0.084 Score=50.07 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=26.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
++++|+|..|+|||||++.+.........+.--|.+|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 479999999999999999998776544222233445654
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.26 E-value=0.14 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.+++|+|+.|+|||||.+.+..-....
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 489999999999999999998765543
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.16 E-value=0.085 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 389
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.09 E-value=0.12 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|+|+.|+|||||++.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999876
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.07 E-value=0.17 Score=55.38 Aligned_cols=39 Identities=33% Similarity=0.293 Sum_probs=30.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
..+++++|.+|+||||++..++...... +++++++=-|+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~ 136 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADT 136 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccc
Confidence 4689999999999999999998877644 66776654344
No 391
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.07 E-value=0.2 Score=53.24 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
.+++...|-||+||||+|..+....... ++|+|+|
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS-GKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEE
Confidence 4667777999999999999888776654 7788776
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.07 E-value=0.15 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~ 229 (945)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.98 E-value=0.12 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987543
No 394
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.96 E-value=0.21 Score=47.45 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..+++|.|..|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999987654
No 395
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.95 E-value=0.21 Score=53.64 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=28.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..+++.+.|-||+||||+|..+....... ++|+|+|
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlv 60 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIV 60 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEE
Confidence 45677777999999999999888776654 6777766
No 396
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.94 E-value=0.11 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=15.9
Q ss_pred EEEEEEecCCCcHHHHHHHHh-cc
Q 002265 208 HVISLVGLGGIGKTTLAQLAY-NN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~-~~ 230 (945)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 54
No 397
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.90 E-value=0.21 Score=54.83 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=33.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccC
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWD 248 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~ 248 (945)
...+|.++|.+|+||||++..++..... .++++++|=-|...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 3679999999999999999998877664 46788777656543
No 398
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.89 E-value=0.15 Score=50.12 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999977543
No 399
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.85 E-value=0.21 Score=53.55 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=54.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCccCCCcCChhhHHhhccCCCCCcEEEEEcCchHHHHHhcCCC
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDVWDGNCNKWEPFFRCLKNDLHGGKILVTTRNVSVARMMGTTE 287 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~ 287 (945)
.+++|+|+.|+||||+.+.+........+++++.+-|.+.... ..+.. .......+... .|-...++..+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~~~~~---~v~q~~~~~~~--~~~~~~La~aL~~~- 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-ESKKC---LVNQREVHRDT--LGFSEALRSALRED- 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSSS---EEEEEEBTTTB--SCHHHHHHHHTTSC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-hcccc---ceeeeeecccc--CCHHHHHHHHhhhC-
Confidence 4899999999999999999988776655677777777663211 00000 00000000000 01112344444444
Q ss_pred ceeeeCCCCChHHHHHHHHHHh
Q 002265 288 LDIISIEQLAEEECWSLFERLV 309 (945)
Q Consensus 288 ~~~~~l~~l~~~~~~~lf~~~~ 309 (945)
+.++-+.+..+.++++++.+.+
T Consensus 197 PdvillDEp~d~e~~~~~~~~~ 218 (356)
T 3jvv_A 197 PDIILVGEMRDLETIRLALTAA 218 (356)
T ss_dssp CSEEEESCCCSHHHHHHHHHHH
T ss_pred cCEEecCCCCCHHHHHHHHHHH
Confidence 3477777777777777766554
No 400
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.81 E-value=1.2 Score=60.08 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=57.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc---------------------------------------cCCceEEEEEcCccC
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV---------------------------------------NSRKKIFLVLDDVWD 248 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~---------------------------------------~~~~~~LlvlDdv~~ 248 (945)
+-|-++|++|+|||++|+.+...... ..+++.++++||+.-
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccccc
Confidence 46889999999999999665433210 014678889999754
Q ss_pred CCcC------ChhhHHhhccCCC-----C-------CcEEEEEcCchH------HHHHhcCCCceeeeCCCCChHHHHHH
Q 002265 249 GNCN------KWEPFFRCLKNDL-----H-------GGKILVTTRNVS------VARMMGTTELDIISIEQLAEEECWSL 304 (945)
Q Consensus 249 ~~~~------~~~~l~~~~~~~~-----~-------gs~iiiTtr~~~------~~~~~~~~~~~~~~l~~l~~~~~~~l 304 (945)
...+ ..+.+...+..++ . +..+|.++.... +...+... ..++.+...+.++-.++
T Consensus 1348 p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRr-f~vi~i~~P~~~~l~~I 1426 (2695)
T 4akg_A 1348 PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRH-AAILYLGYPSGKSLSQI 1426 (2695)
T ss_dssp SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTT-EEEEECCCCTTTHHHHH
T ss_pred ccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhe-eeEEEeCCCCHHHHHHH
Confidence 3322 2344444443221 1 123444443321 21222221 24788888888888888
Q ss_pred HHHHh
Q 002265 305 FERLV 309 (945)
Q Consensus 305 f~~~~ 309 (945)
|....
T Consensus 1427 ~~~il 1431 (2695)
T 4akg_A 1427 YEIYY 1431 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 401
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.74 E-value=0.25 Score=50.51 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=29.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
-.+++|+|+.|+|||||++.+..........++.+.=|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 4689999999999999999998766544245555544444
No 402
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.71 E-value=0.16 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||++.+..-...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999876554
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.70 E-value=0.16 Score=52.36 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||++.+..-...
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 48999999999999999999876554
No 404
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.63 E-value=0.16 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999876543
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.59 E-value=0.19 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.++|.|+|+.|+||||||..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998754
No 406
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.58 E-value=0.23 Score=54.58 Aligned_cols=40 Identities=38% Similarity=0.267 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...+|.++|.+|+||||++..+...... .++++++|=-|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCc
Confidence 3579999999999999999999887764 367776664454
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.54 E-value=0.15 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987644
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.47 E-value=0.14 Score=50.90 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 409
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.45 E-value=0.17 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|.|||||.+.++.-...
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999886553
No 410
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.43 E-value=0.18 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.+++|+|+.|.|||||.+.+..-....
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPT 55 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 589999999999999999998876543
No 411
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.41 E-value=0.17 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 412
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.40 E-value=0.15 Score=50.38 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|.|||||.+.++.-...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 47999999999999999999876543
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.40 E-value=0.17 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.+++|+|+.|.|||||++.+..-....
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 64 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPS 64 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 489999999999999999998865543
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.39 E-value=0.17 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 48999999999999999999876543
No 415
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.37 E-value=0.2 Score=55.02 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCeEEEEEE-ecCCCcHHHHHHHHhccccc-----cCCceEEEE
Q 002265 205 KGLHVISLV-GLGGIGKTTLAQLAYNNDEV-----NSRKKIFLV 242 (945)
Q Consensus 205 ~~~~vi~i~-G~gGiGKTtLa~~~~~~~~~-----~~~~~~Llv 242 (945)
...++|+|+ |-||+||||+|..+...... ..++|+|+|
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 457888888 78999999999988877653 346787766
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.36 E-value=0.17 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999876553
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.35 E-value=0.17 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999986543
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.33 E-value=0.18 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 419
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.33 E-value=0.22 Score=52.90 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..+++.+.|-||+||||+|..++...... ++|+|+|
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~-g~~vlli 50 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKV-RRSVLLL 50 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTS-SSCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhC-CCcEEEE
Confidence 45788889999999999999888766643 6777665
No 420
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.32 E-value=0.19 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.-.|+|+|..|+|||||.+.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46799999999999999999887543
No 421
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.31 E-value=0.19 Score=55.24 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=36.3
Q ss_pred CceecchhHHHHHHHHHhcc---------ccCCCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 181 GEVCGRVDEKNELLSKLCES---------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 181 ~~~vgr~~~~~~l~~~l~~~---------~~~~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..++|.++.++.+...+... .......+-|.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46889888877776555221 00001234588999999999999999988654
No 422
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.30 E-value=0.34 Score=49.82 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCeEEEEEEec-CCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 205 KGLHVISLVGL-GGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 205 ~~~~vi~i~G~-gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...++|.|+|. ||+||||+|..++..... .++|+|+|==|.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~ 121 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDM 121 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 35689999974 999999999988877664 477887763243
No 423
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.24 E-value=0.18 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999885
No 424
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.23 E-value=0.19 Score=52.67 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=26.3
Q ss_pred EEEEEEe---cCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVG---LGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G---~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|++ -||+||||+|..+...... .++|+|+|
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~-~G~rVlli 71 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDK-LNLKVLMI 71 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4667765 9999999999988876653 46777766
No 425
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.21 E-value=0.2 Score=52.06 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|.|.|+.|+||||||..++....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 5899999999999999999987653
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.19 E-value=0.11 Score=54.05 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=24.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
..+|+|.|..|+||||+|+.+.........+-..|=.|++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4589999999999999999998754321111234445565
No 427
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.17 E-value=0.19 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|.|||||.+.+..-...
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 48999999999999999999876543
No 428
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.13 E-value=0.19 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
+++.|+|++|+||||||.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56789999999999999999875
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.13 E-value=0.17 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997754
No 430
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.12 E-value=0.19 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999876543
No 431
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.08 E-value=0.22 Score=51.16 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=28.5
Q ss_pred CeEEEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..++|+|+ |-||+||||+|..+..... .++|+++|
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la--~g~~Vlli 61 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS--KNNKVLLI 61 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH--CCCCEEEE
Confidence 46788886 6899999999999988877 46787776
No 432
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.06 E-value=0.19 Score=50.93 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=22.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|.|||||.+.+..-...
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999886554
No 433
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.00 E-value=0.19 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999885
No 434
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.97 E-value=0.42 Score=45.91 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred CceEEEEEcCccC---CCcCChhhHHhhccCCCCCcEEEEEcCch
Q 002265 236 RKKIFLVLDDVWD---GNCNKWEPFFRCLKNDLHGGKILVTTRNV 277 (945)
Q Consensus 236 ~~~~LlvlDdv~~---~~~~~~~~l~~~~~~~~~gs~iiiTtr~~ 277 (945)
++-=|||||++-. -..-..+.+...+........||+|+|..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3445899999832 12235566777777667788999999984
No 435
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.82 E-value=0.25 Score=54.87 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
.-.+++|+|..|+|||||++.+....... +++++++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999998766533 4455443
No 436
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.82 E-value=0.2 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.+++|+|+.|+|||||.+.+..-....
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 479999999999999999998876554
No 437
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.82 E-value=0.24 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 438
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.79 E-value=0.29 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
+++.|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999877653
No 439
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.78 E-value=0.15 Score=52.09 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=28.8
Q ss_pred CeEEEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 206 GLHVISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 206 ~~~vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
..++|+|+ +-||+||||+|..+....... ++|+|+|
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~-g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL-GKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHC-CCCEEEE
Confidence 45688887 689999999999988877644 6788776
No 440
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.77 E-value=0.25 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+++|+|.+|+|||||++.+.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999986554
No 441
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.73 E-value=0.21 Score=51.13 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+++|+|+.|+|||||.+.+..-..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999988654
No 442
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.69 E-value=0.28 Score=48.82 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=27.6
Q ss_pred EEEEEEec-CCCcHHHHHHHHhccccccCCceEEEEEc
Q 002265 208 HVISLVGL-GGIGKTTLAQLAYNNDEVNSRKKIFLVLD 244 (945)
Q Consensus 208 ~vi~i~G~-gGiGKTtLa~~~~~~~~~~~~~~~LlvlD 244 (945)
++|.|.|. ||+||||+|..+....... ++|+++ +|
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~-G~rVll-~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA-GYRTAG-YK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEE-EC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEE-Ec
Confidence 57888885 8999999999988776643 678877 55
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.64 E-value=0.21 Score=51.42 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.+..-...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999886554
No 444
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.62 E-value=0.21 Score=51.62 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.+++|+|+.|+|||||.+.+..-....
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 479999999999999999998866543
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.56 E-value=0.21 Score=51.23 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|+|||||.+.++.-...
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 48999999999999999999876543
No 446
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.53 E-value=0.21 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+++|+|+.|+|||||.+.+..-..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999999999999999987544
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.47 E-value=0.25 Score=45.91 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988654
No 448
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.46 E-value=0.21 Score=47.91 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.41 E-value=0.21 Score=50.25 Aligned_cols=25 Identities=32% Similarity=0.161 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..|.|.|+.|+||||+|+.+.....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.39 E-value=0.25 Score=51.55 Aligned_cols=39 Identities=41% Similarity=0.278 Sum_probs=30.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
..+++++|.+|+||||++..+....... +++++++=-|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 5789999999999999999988776543 56776654444
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.36 E-value=0.26 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
+.|.|.|+.|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998753
No 452
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=88.33 E-value=0.27 Score=52.83 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=29.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc-cCCceEEEEEcCc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEV-NSRKKIFLVLDDV 246 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~-~~~~~~LlvlDdv 246 (945)
..++...|-||+||||+|..+...... ..++|+|+|==|.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 456667799999999999988877763 4577887763344
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.31 E-value=0.21 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
+|.|.|++|+||+|.|+.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 577999999999999999987643
No 454
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.29 E-value=0.23 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+++|+|.+|+|||||++.+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999998764
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.11 E-value=0.24 Score=48.25 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.-.|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 456
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.08 E-value=0.24 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.098 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..++|.|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 357899999999999999999987653
No 457
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.08 E-value=0.18 Score=54.53 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=27.6
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+ +-||+||||+|..+...... .++|+|+|
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVLlI 36 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFAL-QGKRVLYV 36 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCcEEEE
Confidence 578877 79999999999988876654 57888877
No 458
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.00 E-value=0.25 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999873
No 459
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.92 E-value=0.22 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.-.+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3469999999999999999988764
No 460
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.90 E-value=0.27 Score=48.35 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=24.7
Q ss_pred EEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 209 VISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 209 vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
+|+|+ +-||+||||+|..+....... + |+++|
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~-g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ-G-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT-S-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc-C-CEEEE
Confidence 56665 789999999999988777654 4 66665
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.84 E-value=0.25 Score=51.48 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.+++|+|+.|.|||||++.+..-.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999988765
No 462
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.77 E-value=0.31 Score=51.04 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=29.7
Q ss_pred CCeEEEEEEec-CCCcHHHHHHHHhccccccCCceEEEE
Q 002265 205 KGLHVISLVGL-GGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 205 ~~~~vi~i~G~-gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
...++|.|.|. ||+||||+|..++..... .++|+|+|
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEE
Confidence 35679999985 899999999988877664 47788776
No 463
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.77 E-value=0.7 Score=49.33 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=29.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...+|+|+|.+|+|||||+..+....... ++++.+|=.|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~~d~ 94 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAVDP 94 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEeecC
Confidence 56789999999999999999987665433 44555544444
No 464
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.77 E-value=0.31 Score=49.73 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=26.6
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+ +-||+||||+|..+...... .++|+++|
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~-~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh-CCCcEEEE
Confidence 577776 57999999999998887764 46777765
No 465
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.64 E-value=0.27 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.++.|+|.+|+|||||+..+....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999988643
No 466
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.46 E-value=0.36 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 467
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.43 E-value=0.3 Score=50.82 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=27.1
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLV-GLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~-G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+ +-||+||||+|..+....... ++|+++|
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYG-GAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHC-CCcEEEE
Confidence 578887 689999999999988776643 6787766
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.43 E-value=0.28 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.+++|+|+.|+|||||.+.+..-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998865
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.40 E-value=0.28 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998754
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.39 E-value=0.42 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.100 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.-++++|+|+.|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998864
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.37 E-value=0.27 Score=50.48 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNNDEVN 234 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~~~~~ 234 (945)
.++|+|..|+|||||.+.++......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999999999999865543
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.31 E-value=0.28 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998765
No 473
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.21 E-value=0.41 Score=51.28 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=29.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...+|+|+|.+|+|||||...+....... +.++.++--|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEeecC
Confidence 46799999999999999999998755443 34444444333
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.15 E-value=0.28 Score=49.36 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998744
No 475
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.11 E-value=0.37 Score=48.35 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=26.7
Q ss_pred EEEEEEe-cCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 208 HVISLVG-LGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 208 ~vi~i~G-~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
++|+|+| -||+||||+|..+....... ++|+++|
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~-g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDR-GRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 5777764 79999999999988877643 6777766
No 476
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.04 E-value=0.15 Score=61.46 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=37.5
Q ss_pred CCceecchhHHHHHHHHHhccccC--------CCCeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 180 EGEVCGRVDEKNELLSKLCESSEQ--------QKGLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 180 ~~~~vgr~~~~~~l~~~l~~~~~~--------~~~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-.+++|.++..+.+.+.+...... -.....+.++|++|+||||||+++++...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356788888888887766421100 01234688999999999999999987643
No 477
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.03 E-value=0.29 Score=49.55 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=25.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
-.++.|.|.+|+|||++|.+++.+.....+++++++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 358999999999999999987654333334444433
No 478
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.03 E-value=0.35 Score=51.42 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=27.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
.+++.+.|-||+||||+|..++...... ++|+++|
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllv 53 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLI 53 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEE
Confidence 4566778999999999999888776643 6787766
No 479
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.93 E-value=0.3 Score=48.80 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
-..|.|.|+.|+||||+++.+.....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987654
No 480
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=86.90 E-value=0.56 Score=48.60 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCeEEEEEEe-cCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 205 KGLHVISLVG-LGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 205 ~~~~vi~i~G-~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...++|+|+| -||+||||+|..++...... ++|+|+|==|.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~ 131 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQT-NKRVLLIDCDM 131 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTT-TCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhC-CCCEEEEeccC
Confidence 3567888887 58999999999888776643 67887762244
No 481
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.82 E-value=0.32 Score=45.85 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 482
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.78 E-value=0.32 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|.|||||.+.+..-...
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 48999999999999999999876543
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.71 E-value=0.68 Score=46.55 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
....|+|+|.+|+|||||...+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 456799999999999999999887543
No 484
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=86.69 E-value=0.24 Score=54.54 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCeEEEEEE-ecCCCcHHHHHHHHhccccc-----cCCceEEEE
Q 002265 205 KGLHVISLV-GLGGIGKTTLAQLAYNNDEV-----NSRKKIFLV 242 (945)
Q Consensus 205 ~~~~vi~i~-G~gGiGKTtLa~~~~~~~~~-----~~~~~~Llv 242 (945)
...++|+|+ |-||+||||+|..+...... ..++|+|+|
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 456788887 78999999999888876653 346777766
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.63 E-value=0.25 Score=51.62 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
.+++|+|+.|.|||||++.+..-.....+ . |.+|+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G-~--I~i~G~ 116 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSG-C--IRIDGQ 116 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEE-E--EEETTE
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCc-E--EEECCE
Confidence 58999999999999999999876654322 2 345655
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.62 E-value=0.4 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.-.|.++|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999998764
No 487
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.59 E-value=0.31 Score=46.85 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998653
No 488
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.55 E-value=0.35 Score=45.73 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.55 E-value=0.36 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 002265 209 VISLVGLGGIGKTTLAQLAYN 229 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~ 229 (945)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999865
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.51 E-value=0.35 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
..|+|.|..|+||||+++.+.....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999988653
No 491
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.51 E-value=0.33 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 002265 209 VISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 209 vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
.|+++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999998754
No 492
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.40 E-value=0.81 Score=48.70 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=29.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEcCc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLDDV 246 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlDdv 246 (945)
...+++|+|..|+|||||.+.+....... +.++.++=.|+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~d~ 93 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAVDP 93 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEEcC
Confidence 45799999999999999999998765443 34455544444
No 493
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.38 E-value=0.45 Score=47.07 Aligned_cols=35 Identities=17% Similarity=-0.014 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEE
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLV 242 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~Llv 242 (945)
-.++.|+|..|+||||++..+..+.... +++++++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 4689999999999999999888877544 5677666
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.37 E-value=0.37 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhccc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.-+++.|+|..|+|||||++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999987653
No 495
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.27 E-value=0.46 Score=47.92 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.++.|.|.+|+||||||.+++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999988765443
No 496
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.17 E-value=0.51 Score=51.00 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccCCceEEEEEc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNNDEVNSRKKIFLVLD 244 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~~~~~~~~~LlvlD 244 (945)
-.+++|+|+.|+||||+++.+..........+++++=|
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 45899999999999999999988665443445544433
No 497
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.12 E-value=0.35 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc
Q 002265 207 LHVISLVGLGGIGKTTLAQLAYNND 231 (945)
Q Consensus 207 ~~vi~i~G~gGiGKTtLa~~~~~~~ 231 (945)
.-.|+++|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 498
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.01 E-value=0.43 Score=46.06 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcc
Q 002265 206 GLHVISLVGLGGIGKTTLAQLAYNN 230 (945)
Q Consensus 206 ~~~vi~i~G~gGiGKTtLa~~~~~~ 230 (945)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999999865
No 499
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.00 E-value=0.36 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDE 232 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~ 232 (945)
.+|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999987653
No 500
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.00 E-value=0.37 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc
Q 002265 208 HVISLVGLGGIGKTTLAQLAYNNDEV 233 (945)
Q Consensus 208 ~vi~i~G~gGiGKTtLa~~~~~~~~~ 233 (945)
.+++|+|+.|.|||||.+.+..-...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 48999999999999999999876554
Done!