BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002266
(945 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 10/252 (3%)
Query: 37 SSETTISIHDPLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95
SS T S P+ P+ K L H V+++ SPN LAS S D +K++ G+F
Sbjct: 22 SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 81
Query: 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155
+ I+ L I +A++ ++L +A DD+ +K+ + G + LKGH V F+P
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 156 NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215
S + S +V W++++G+ L L SDP ++ + ++ DG +
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYD 194
Query: 216 NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDID 273
++D + + L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 274 RQKFDDRICCMA 285
+++ C A
Sbjct: 255 TGHKNEKYCIFA 266
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 135 GSIARVL-KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L PV+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 258
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 317
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 318 IASAALENDKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 10/252 (3%)
Query: 37 SSETTISIHDPLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95
SS T S P+ P+ K L H V+++ SPN LAS S D +K++ G+F
Sbjct: 20 SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 79
Query: 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155
+ I+ L I +A++ ++L +A DD+ +K+ + G + LKGH V F+P
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 156 NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215
S + S +V W++++G+ L L SDP ++ + ++ DG +
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYD 192
Query: 216 NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDID 273
++D + + L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 274 RQKFDDRICCMA 285
+++ C A
Sbjct: 253 TGHKNEKYCIFA 264
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 135 GSIARVL-KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L PV+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 256
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 315
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 316 IASAALENDKTIKLW 330
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 128/242 (52%), Gaps = 12/242 (4%)
Query: 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFN 112
L + L H V +A SP+ +AS S D +VKL+ G QT +T + +R +AF+
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFS 107
Query: 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172
G +A+A DD+ +KL N +G + + L GH V G+AF P+ + +AS TV W
Sbjct: 108 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232
++G+ L L SS+ +++SPDG+T+A V +++R+ + L +L
Sbjct: 167 N-RNGQLLQTLT-------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 217
Query: 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNA 292
G H + +++SP+G+ +A++S D+ + +W+ +L + +A++P G
Sbjct: 218 TG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 293 LA 294
+A
Sbjct: 277 IA 278
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%), Gaps = 12/213 (5%)
Query: 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFN 112
L + L H V +A SP+ +AS S D +VKL+ G QT +T + + +AF+
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFS 189
Query: 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172
G +A+A DD+ +KL N +G + + L GH V G+AF P+ + +AS TV W
Sbjct: 190 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232
++G+ L L SS+N +++ PDG+T+A V +++R+ + L +L
Sbjct: 249 N-RNGQLLQTLT-------GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL 299
Query: 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265
G H + +++SP+G+ +A++S D+ + +W+
Sbjct: 300 TG-HSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 12/242 (4%)
Query: 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFN 112
L + L H V +A SP+ +AS S D +VKL+ G QT +T + + +AF+
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFS 148
Query: 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172
G +A+A DD+ +KL N +G + + L GH V G+AF P+ + +AS TV W
Sbjct: 149 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Query: 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232
++G+ L L SS+ +++SPDG+T+A V +++R+ + L +L
Sbjct: 208 N-RNGQLLQTLT-------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 258
Query: 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNA 292
G H + +++ P+G+ +A++S D+ + +W+ +L + +A+ P G
Sbjct: 259 TG-HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 293 LA 294
+A
Sbjct: 318 IA 319
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 12/238 (5%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L H V +A SP+ +AS S D +VKL+ G QT +T + + +AF+ G
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQ 70
Query: 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176
+A+A DD+ +KL N +G + + L GH V G+AF P+ + +AS TV W ++
Sbjct: 71 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236
G+ L L SS+ +++SPDG+T+A V +++R+ + L +L G H
Sbjct: 129 GQLLQTLT-------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-H 179
Query: 237 VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALA 294
+ +++SP+G+ +A++S D+ + +W+ +L + +A+ P G +A
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 237
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 12/242 (4%)
Query: 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFN 112
L + L H V +A SP+ +AS S D +VKL+ G QT +T + + +AF+
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFS 353
Query: 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172
G +A+A DD+ +KL N +G + + L GH V G+AF P+ + +AS TV W
Sbjct: 354 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232
++G+ L L SS+ +++SPD +T+A V +++R+ + L +L
Sbjct: 413 N-RNGQLLQTLT-------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTL 463
Query: 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNA 292
G H + +++SP+G+ +A++S D+ + +W+ +L + +A+ P G
Sbjct: 464 TG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 522
Query: 293 LA 294
+A
Sbjct: 523 IA 524
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 115/213 (53%), Gaps = 12/213 (5%)
Query: 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFN 112
L + L H V +A SP+ +AS S D +VKL+ G QT +T + + +AF+
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFS 435
Query: 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172
+A+A DD+ +KL N +G + + L GH V G+AF P+ + +AS TV W
Sbjct: 436 PDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232
++G+ L L SS+ +++SPDG+T+A V +++R+ + L +L
Sbjct: 495 N-RNGQLLQTLT-------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 545
Query: 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265
G H + +++SP+G+ +A++S D+ + +W+
Sbjct: 546 TG-HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 10/254 (3%)
Query: 35 ASSSETTISIHDPLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG 93
A S T S P+ P+ K L H V+++ SPN LAS S D +K++ G
Sbjct: 2 AMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 94 EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAF 153
+F+ I+ L I +A++ ++L +A DD+ +K+ + G + LKGH V F
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 154 DPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG 213
+P S + S +V W++++G+ L L SDP ++ + ++ DG +
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSS 174
Query: 214 LKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLD 271
++D + + L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
Query: 272 IDRQKFDDRICCMA 285
+++ C A
Sbjct: 235 TYTGHKNEKYCIFA 248
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 240
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 299
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 300 IASAALENDKTIKLW 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 128 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 284 MA 285
A
Sbjct: 241 FA 242
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 234
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 293
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 294 IASAALENDKTIKLW 308
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 84
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 145 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 284 MA 285
A
Sbjct: 258 FA 259
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 251
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 310
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 311 IASAALENDKTIKLW 325
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 10/251 (3%)
Query: 38 SETTISIHDPLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ 96
S T S P+ P+ K L H V+++ SPN LAS S D +K++ G+F+
Sbjct: 5 SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
Query: 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPN 156
I+ L I +A++ ++L +A DD+ +K+ + G + LKGH V F+P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 157 SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN 216
S + S +V W++++G+ L L SDP ++ + ++ DG +
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDG 177
Query: 217 DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDR 274
++D + + L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 275 QKFDDRICCMA 285
+++ C A
Sbjct: 238 GHKNEKYCIFA 248
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 240
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 299
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 300 IASAALENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 68
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 129 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 284 MA 285
A
Sbjct: 242 FA 243
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 235
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 294
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 295 IASAALENDKTIKLW 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 128 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 284 MA 285
A
Sbjct: 241 FA 242
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 234
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 293
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 294 IASAALENDKTIKLW 308
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 134 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 284 MA 285
A
Sbjct: 247 FA 248
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 240
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 299
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 300 IASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 72
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 133 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 284 MA 285
A
Sbjct: 246 FA 247
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Query: 32 LVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP 91
L+ +SS + I D L ++ V+ + SPN + + ++D+++KL+ +
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Query: 92 GGEFQTNITRFTLPIRVLAFNKS---GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPV 148
G+ T + N S G + + +D + + N I + L+GH V
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 287
Query: 149 TGLAFDPNSEYLAS 162
A P +AS
Sbjct: 288 ISTACHPTENIIAS 301
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 63
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 124 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 284 MA 285
A
Sbjct: 237 FA 238
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 230
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 289
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 290 IASAALENDKTIKLW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 47 PLLPSNLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP 105
P+ P+ K L H V+++ SPN LAS S D +K++ G+F+ I+ L
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 66
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I +A++ ++L +A DD+ +K+ + G + LKGH V F+P S + S
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+V W++++G+ L L SDP ++ + ++ DG + ++D +
Sbjct: 127 DESVRIWDVKTGKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICC 283
+ L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 284 MA 285
A
Sbjct: 240 FA 241
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 233
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 292
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 293 IASAALENDKTIKLW 307
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 9/231 (3%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L H V+++ SPN LAS S D +K++ G+F+ I+ L I +A++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176
+L +A DD+ +K+ + G + LKGH V F+P S + S +V W++++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236
G+ L L SDP ++ + ++ DG + ++D + + L +L D
Sbjct: 142 GKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 237 VQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICCMA 285
P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C A
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 135 GSIARVLKGHKG-PVTGLAFDPNSEYLASIDSIGTVIYWELQSGREL 180
G + L PV+ + F PN +Y+ + T+ W+ G+ L
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 9/231 (3%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L H V+++ SPN LAS S D +K++ G+F+ I+ L I +A++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176
+L +A DD+ +K+ + G + LKGH V F+P S + S +V W++++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236
G+ L L SDP ++ + ++ DG + ++D + + L +L D
Sbjct: 142 GKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 237 VQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICCMA 285
P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C A
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 135 GSIARVLKGHKG-PVTGLAFDPNSEYLASIDSIGTVIYWELQSGREL 180
G + L PV+ + F PN +Y+ + T+ W+ G+ L
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 10/252 (3%)
Query: 37 SSETTISIHDPLLPS-NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95
SS T S P+ P+ L L H V+++ SPN LAS S D +K++ G+F
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155
+ I+ L I +A++ ++L +A DD+ +K+ + G + LKGH V F+P
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 156 NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215
S + S +V W++++G L L SDP ++ + ++ DG +
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYD 173
Query: 216 NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDID 273
++D + + L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 274 RQKFDDRICCMA 285
+++ C A
Sbjct: 234 TGHKNEKYCIFA 245
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 32 LVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP 91
L+ +SS + I D L ++ V+ + SPN + + ++D+ +KL+ +
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Query: 92 GGEFQTNITRFTLPIRVLAFNKS---GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPV 148
G+ T + N S G + + +D + + N I + L+GH V
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Query: 149 TGLAFDPNSEYLAS 162
A P +AS
Sbjct: 286 ISTACHPTENIIAS 299
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 10/252 (3%)
Query: 37 SSETTISIHDPLLPS-NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95
SS T S P+ P+ L L H V+++ SPN LAS S D +K++ G+F
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155
+ I+ L I +A++ ++L +A DD+ +K+ + G + LKGH V F+P
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 156 NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215
S + S +V W++++G L L SDP ++ + ++ DG +
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYD 173
Query: 216 NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDID 273
++D + + L +L D P+ F+ +SPNGKY+ ++LD + +WD GK L
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 274 RQKFDDRICCMA 285
+++ C A
Sbjct: 234 TGHKNEKYCIFA 245
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 135 GSIARVLKGHKGP-VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L P V+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 237
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 296
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 297 IASAALENDKTIKLW 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 9/231 (3%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L H V+++ SPN LA+ S D +K++ G+F+ I+ L I +A++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176
+L +A DD+ +K+ + G + LKGH V F+P S + S +V W++++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236
G+ L L SDP ++ + ++ DG + ++D + + L +L D
Sbjct: 142 GKCLKTLPA-----HSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 237 VQPICFLSWSPNGKYMATSSLDRQILIWDV--GKKLDIDRQKFDDRICCMA 285
P+ F+ +SPNGKY+ ++LD + +WD GK L +++ C A
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ + W ++ LV+AS + T+ I D + K L+ H + V +P S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASD-DKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS D SV+++ G+ + + P+ + FN+ GS++ ++ D ++ +T
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 135 GSIARVLKGHKG-PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193
G + L PV+ + F PN +Y+ + T+ W+ G+ L G
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHK 237
Query: 194 PSSMNVLS-WSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+ + +S G V G ++++V +++ T E + L+G H + + P
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENI 296
Query: 252 MATSSL--DRQILIW 264
+A+++L D+ I +W
Sbjct: 297 IASAALENDKTIKLW 311
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 9/224 (4%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF-NKSG 115
++ H D V A S + + +A+ S D VK++ G+ + + F NKS
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 116 SMLAAAG-DDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174
+L A G +D +KL + + GH V F P+ E LAS + GT+ W++
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 175 QSGRELH--NLKRVAPDIGSDPSSMNVL----SWSPDGETLAVPGLKNDVVMYDRDTAEK 228
+S E N+KR P + V+ SWS DG+ + V KN V+++D T+
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL 831
Query: 229 LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDI 272
L + H I + +SP + + +W++ +L +
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
Query: 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG 115
L+ H++ V L +S L S S D +VK++ G + + T + A +
Sbjct: 1039 FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097
Query: 116 SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175
+ ++ D+ K+ + S LKGH G V AF + LA+ D G + W +
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Query: 176 SGRELHNLKRVAPDIGSDPSSMNV--LSWSPDGETLAVPG 213
G+ LH+ ++ + G+ V + +SPD +TL G
Sbjct: 1158 DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 110 AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTV 169
F++ G +A+ G D+ +++ G +K H+ V AF + Y+A+ + V
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 170 IYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVV--MYDRDTAE 227
W+ +G+ +H + + N ++ L + ND ++D + E
Sbjct: 682 KIWDSATGKLVHTYDEHSEQV-------NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 228 KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
++ G H + +SP+ + +A+ S D + +WDV
Sbjct: 735 CRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 9/224 (4%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF-NKSG 115
++ H D V A S + + +A+ S D VK++ G+ + + F NKS
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 116 SMLAAAG-DDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174
+L A G +D +KL + + GH V F P+ E LAS + GT+ W++
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 175 QSGRELH--NLKRVAPDIGSDPSSMNVL----SWSPDGETLAVPGLKNDVVMYDRDTAEK 228
+S E N+KR P + V+ SWS DG+ + V KN V+++D T+
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL 838
Query: 229 LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDI 272
L + H I + +SP + + +W++ +L +
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 882
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
Query: 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG 115
L+ H++ V L +S L S S D +VK++ G + + T + A +
Sbjct: 1046 FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1104
Query: 116 SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175
+ ++ D+ K+ + S LKGH G V AF + LA+ D G + W +
Sbjct: 1105 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Query: 176 SGRELHNLKRVAPDIGSDPSSMNV--LSWSPDGETLAVPG 213
G+ LH+ ++ + G+ V + +SPD +TL G
Sbjct: 1165 DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 110 AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTV 169
F++ G +A+ G D+ +++ G +K H+ V AF + Y+A+ + V
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 170 IYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVV--MYDRDTAE 227
W+ +G+ +H + + N ++ L + ND ++D + E
Sbjct: 689 KIWDSATGKLVHTYDEHSEQV-------NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 228 KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
++ G H + +SP+ + +A+ S D + +WDV
Sbjct: 742 CRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L HR VT + P + + S S D ++K++ + G+F+ + T ++ ++F+ SG
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176
+LA+ D IKL + R + GH V+ ++ PN +++ S T+ WE+Q+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236
G + ++ + DG +A V ++ T E LR +H
Sbjct: 224 G-------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EH 275
Query: 237 VQPICFLSWSPN--------------------GKYMATSSLDRQILIWDV 266
+ +SW+P G ++ + S D+ I +WDV
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 111/253 (43%), Gaps = 19/253 (7%)
Query: 32 LVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP 91
++ ++S + TI + D + + L+ H D V ++ + LAS S D ++KL+ F
Sbjct: 122 VMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 92 GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGL 151
G E + + ++ +G + +A D+ IK+ G + GH+ V +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 152 AFDPNSEYLASIDSIGTVIYWELQSGR---ELHNLKRVAPDIGSDP-SSMNVLSWSPDGE 207
+ + +AS + TV W + + EL + V I P SS + +S + E
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 208 T--------LAVPGLKNDVV-MYDRDTAEKLFSLRG--DHVQPICFLSWSPNGKYMATSS 256
T + G ++ + M+D T L +L G + V+ + F S GK++ + +
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS---GGKFILSCA 357
Query: 257 LDRQILIWDVGKK 269
D+ + +WD K
Sbjct: 358 DDKTLRVWDYKNK 370
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 32 LVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP 91
L+ + S++ TI + D + + H V+++++ PN + S S D ++K+++
Sbjct: 164 LLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 92 GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGL 151
G T +R++ N+ G+++A+ +D+ +++ L+ H+ V +
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 152 AFDPNSEYLASIDSIG--------------------TVIYWELQSGRELHNLKRVAPDIG 191
++ P S Y + ++ G T+ W++ +G L L +G
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL------VG 336
Query: 192 SDPSSMNVLSWS--------PDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFL 243
D VL S D +TL V KN M + E + L
Sbjct: 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF----------VTSL 386
Query: 244 SWSPNGKYMATSSLDRQILIWD 265
+ Y+ T S+D+ + +W+
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVWE 408
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 24/196 (12%)
Query: 8 LREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTAL 67
+R H + S SI+ H+V+AS + TI + + + K HR+ V +
Sbjct: 185 IRTMHGHDHNVSSVSIM--PNGDHIVSASR-DKTIKMWE-VQTGYCVKTFTGHREWVRMV 240
Query: 68 ALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF---------------- 111
+ + T +AS S D +V+++ E + + + +++
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 112 ----NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG 167
K G L + D+ IK+ + G L GH V G+ F +++ S
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 168 TVIYWELQSGRELHNL 183
T+ W+ ++ R + L
Sbjct: 361 TLRVWDYKNKRCMKTL 376
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 112/215 (52%), Gaps = 18/215 (8%)
Query: 60 HRDGVTALALSPN----STCLASGSIDHSVKLYKFPGG--EFQTNITRFTLPIRVLAFNK 113
H D + ++A N S + +GS+D VK++K+ + Q ++ L + + +
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 114 SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTG--LAFDPNSEYLASIDSIGTVIY 171
+ + A++ D I+L + +G + + GPV LAF P+S+YLA+ +G V
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
+ ++SG++ ++L I S +++SPDG+ LA + + ++D T + L +
Sbjct: 149 FGVESGKKEYSLDTRGKFILS-------IAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201
Query: 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
L G H PI L++SP+ + + T+S D I I+DV
Sbjct: 202 LEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 64 VTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD 123
+ ++A SP+ LASG+ID + ++ G+ + +PIR L F+ +L A D
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 124 DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNL 183
D IK+ + ++A L GH V +AF P+ + S S +V W++ + +H
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 8/199 (4%)
Query: 67 LALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEG 126
LA SP+S LA+G+ V ++ G+ + ++ I +A++ G LA+ D
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 127 IKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRV 186
I + + G + L+GH P+ L F P+S+ L + G + +++Q +
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-------NL 240
Query: 187 APDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWS 246
A + S + +++ PD V ++D T + + DH + + ++
Sbjct: 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYN 299
Query: 247 PNGKYMATSSLDRQILIWD 265
NG + + D++I I+D
Sbjct: 300 GNGSKIVSVGDDQEIHIYD 318
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 9/221 (4%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
++ H D V A S + +A+ S+D VK++ GE + + F S
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 117 --MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174
+LA D +KL + + GH V F P+ + LAS + GT+ W+
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 175 QSGRELH--NLKRVAPDIGSDPSSMNVL----SWSPDGETLAVPGLKNDVVMYDRDTAEK 228
S E N+K+ ++ M V+ SWS DG + V KN + ++D T+
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA-KNKIFLFDIHTSGL 837
Query: 229 LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK 269
L + H I + +SP + + +W+ +
Sbjct: 838 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSR 878
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 2/159 (1%)
Query: 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG 115
LR H++ V L NS L S S D +VK++ G + + + +
Sbjct: 1045 FLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA 1103
Query: 116 SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175
+ ++ D+ K+ + L+GH G V AF +S LA+ D G + W +
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Query: 176 SGRELHNLKRVAPD-IGSDPSSMNVLSWSPDGETLAVPG 213
+G LH ++ + + + L +SPDG+ L G
Sbjct: 1164 NGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEK 228
++Y E + + + NL R+ +D ++ +S DG+ +A G + ++ +T EK
Sbjct: 598 MLYLEWINKKNITNLSRLVVRPHTD--AVYHACFSEDGQRIASCGADKTLQVFKAETGEK 655
Query: 229 LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265
L ++ + +C ++S + +++AT S+D+++ IW+
Sbjct: 656 LLEIKAHEDEVLC-CAFSTDDRFIATCSVDKKVKIWN 691
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKS 114
+ LR H V+ + +S + SGS D +++L+ G T + +AF+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARVL-KGHKGPVTGLAFDPNSE--YLASIDSIGTVIY 171
+ + D+ IKL NT+ V + H V+ + F PNS + S V
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W L N K IG +N ++ SPDG A G +++D + + L++
Sbjct: 200 WNLA------NCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252
Query: 232 LR-GDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK 276
L GD + +CF SPN +Y ++ I IWD+ K+ +D K
Sbjct: 253 LDGGDIINALCF---SPN-RYWLCAATGPSIKIWDLEGKIIVDELK 294
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 35/250 (14%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
+ S + T+ + D + + + H +D V ++A S ++ + SGS D ++KL+ G
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKD-VLSVAFSSDNRQIVSGSRDKTIKLWNTLG-- 159
Query: 95 FQTNITRFTLP-------IRVLAF--NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHK 145
+ ++T+ + + F N S ++ + G D+ +K+ N + + GH
Sbjct: 160 ----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215
Query: 146 GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD 205
G + + P+ AS G + W+L G+ L+ L DI +N L +SP+
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDI------INALCFSPN 267
Query: 206 --------GETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSS 256
G ++ + L+ +++ + +++ S P C L+WS +G+ +
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIV--DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 257 LDRQILIWDV 266
D + +W V
Sbjct: 326 TDNLVRVWQV 335
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 141 LKGHKGPVTGLAFDPN-SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNV 199
LKGH G VT +A P + + S T+I W+L + + + A S S V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 200 LSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR 259
+ S DG+ + ++D T G H + + +++S + + + + S D+
Sbjct: 94 I--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 260 QILIWDVGK--KLDIDRQKFDDRICCMAWKP 288
I +W+ K + + + + C+ + P
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKS 114
+ LR H V+ + +S + SGS D +++L+ G T + +AF+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARVL-KGHKGPVTGLAFDPNSE--YLASIDSIGTVIY 171
+ + D+ IKL NT+ V + H V+ + F PNS + S V
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W L N K IG +N ++ SPDG A G +++D + + L++
Sbjct: 177 WNLA------NCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 229
Query: 232 LR-GDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK 276
L GD + +CF SPN +Y ++ I IWD+ K+ +D K
Sbjct: 230 LDGGDIINALCF---SPN-RYWLCAATGPSIKIWDLEGKIIVDELK 271
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 35/250 (14%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
+ S + T+ + D + + + H +D V ++A S ++ + SGS D ++KL+ G
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKD-VLSVAFSSDNRQIVSGSRDKTIKLWNTLG-- 136
Query: 95 FQTNITRFTLP-------IRVLAF--NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHK 145
+ ++T+ + + F N S ++ + G D+ +K+ N + + GH
Sbjct: 137 ----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 192
Query: 146 GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD 205
G + + P+ AS G + W+L G+ L+ L DI +N L +SP+
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDI------INALCFSPN 244
Query: 206 --------GETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSS 256
G ++ + L+ +++ + +++ S P C L+WS +G+ +
Sbjct: 245 RYWLCAATGPSIKIWDLEGKIIV--DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 302
Query: 257 LDRQILIWDV 266
D + +W V
Sbjct: 303 TDNLVRVWQV 312
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 141 LKGHKGPVTGLAFDPN-SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNV 199
LKGH G VT +A P + + S T+I W+L + + + A S S V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 200 LSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR 259
+ S DG+ + ++D T G H + + +++S + + + + S D+
Sbjct: 71 I--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 260 QILIWDVGK--KLDIDRQKFDDRICCMAWKP 288
I +W+ K + + + + C+ + P
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 158
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITR--FTLPIRVLAFN 112
K L H +D V ++A SP++ + SG D++++++ G E ++R T + + F+
Sbjct: 104 KFLGHTKD-VLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFS 161
Query: 113 KS--GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVI 170
S ++ + G D +K+ + G + LKGH VT + P+ AS D G
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVAR 221
Query: 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLF 230
W+L G L + AP +N + +SP+ + K + ++D + + +
Sbjct: 222 LWDLTKGEALSEMAAGAP--------INQICFSPNRYWMCAATEKG-IRIFDLENKDIIV 272
Query: 231 SLRGDH-----VQPICF-LSWSPNGKYMATSSLDRQILIWDV 266
L +H + P C ++WS +G + + D I +W V
Sbjct: 273 ELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 22/254 (8%)
Query: 27 QQAHHLVTASSSETTISI------HDPLLPSNLP-KILRHHRDGVTALALSPNSTCLASG 79
+ A +V+ S +T +S H LP + L H V+ +ALS N S
Sbjct: 26 ETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSA 85
Query: 80 SIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR 139
S DHS++L+ G+ Q T + +AF+ + + G D +++ N +
Sbjct: 86 SWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHT 145
Query: 140 VLKG-HKGPVTGLAFDP--NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSS 196
+ +G H V+ + F P ++ + S V W+L +GR + +LK +
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK-------GHTNY 198
Query: 197 MNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL-RGDHVQPICFLSWSPNGKYMATS 255
+ ++ SPDG A ++D E L + G + ICF SPN +Y +
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF---SPN-RYWMCA 254
Query: 256 SLDRQILIWDVGKK 269
+ ++ I I+D+ K
Sbjct: 255 ATEKGIRIFDLENK 268
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
R L+GH V+ +A N + S ++ W LQ+G+ + D+ S
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLS------ 114
Query: 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL-RGDHVQPICFLSWSP--NGKYMATS 255
+++SPD + G N + +++ E + +L RG H + + +SP + + +
Sbjct: 115 -VAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 256 SLDRQILIWDVGK-KLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVW-----ESVV 309
D + +WD+ +L D + + + + P G+ A D G +W E++
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 310 PSSMKSPTEDIPSSRSNY-------NGLLLFDEEEKE 339
+ +P I S + Y G+ +FD E K+
Sbjct: 233 EMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKD 269
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 17/228 (7%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L H V + LS + SGS D ++L+ G T + +AF+
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 117 MLAAAGDDEGIKLINTIDG---SIARVLKGHKGPVTGLAFDPNS--EYLASIDSIGTVIY 171
+ +A D IKL NT+ +I+ +GH+ V+ + F PN+ + S TV
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W L + ++ + ++ ++ SPDG A G V+++D +KL+S
Sbjct: 546 WNLSNC-------KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 232 LRGDHV-QPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFD 278
L + V +CF SPN +Y ++ + I IWD+ K ++ K D
Sbjct: 599 LEANSVIHALCF---SPN-RYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 33/237 (13%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNIT------RFTLPIRV 108
+ + H +D V ++A S ++ + S S D ++KL+ G E + I+ R +
Sbjct: 467 RFVGHTKD-VLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVR 524
Query: 109 LAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGT 168
+ N + +A D+ +K+ N + + L GH G V+ +A P+ AS G
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLA--------VPGLKNDVVM 220
V+ W+L G++L++L+ S ++ L +SP+ L + L++ ++
Sbjct: 585 VLLWDLAEGKKLYSLEA--------NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636
Query: 221 YDRDTAEKLFSLRGDHVQPICF---------LSWSPNGKYMATSSLDRQILIWDVGK 268
D K + + D+ P L+WS +G + + D I +W +G+
Sbjct: 637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 33 VTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG 92
+ ++S + T+ + + L L L H V+ +A+SP+ + ASG D V L+
Sbjct: 534 IVSASWDKTVKVWN-LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Query: 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK 142
G+ ++ ++ I L F+ + L AA + GIK+ + SI LK
Sbjct: 593 GKKLYSLEANSV-IHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLK 640
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 31/219 (14%)
Query: 109 LAFNKSGSMLAAAGDDEGIKLINTI-DGSIARVL--KGHKGPVTGLAFDPNSEYLASIDS 165
LA+N +G++LA+ G D I++ T D I + + +GH+ V +A+ P YLAS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
T W+ + + + V G + + + ++W+P G LA V +++ D
Sbjct: 82 DATTCIWK----KNQDDFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 226 AE--KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICC 283
+ + S+ H Q + + W P+ + +A++S D + ++ R++ DD +CC
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY---------REEEDDWVCC 187
Query: 284 ------------MAWKPIGNALAVIDVMGKYGVWESVVP 310
+A+ P G LA +W +P
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 31/269 (11%)
Query: 23 ILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID 82
+ W ++L +AS TT L H + V ++A +P+ LA+ S D
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 83 HSVKLYKFPGG---EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLI--NTIDGSI 137
SV +++ E + + T ++ + ++ S +LA+A D+ +KL D
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186
Query: 138 ARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSM 197
L+GH+ V LAFDP+ + LAS TV W + L ++ GSDPS
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR----QYLPGNEQGVACSGSDPSWK 242
Query: 198 NV-------------LSWSPDGETLAVPGLKNDVVMY----DRDTAEKLFSLRGD----H 236
+ ++W LA + + ++ + D + FSL H
Sbjct: 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302
Query: 237 VQPICFLSWSPNG-KYMATSSLDRQILIW 264
Q + ++W+P +A+ S D ++ W
Sbjct: 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 26/146 (17%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYK--FPGGE-------------FQTNITR 101
L H V +LA P+ LAS S D +V++++ PG E ++
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 102 F-TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS---------IARVLKGHKGPVTGL 151
F + I +A+ + LA A D+ I++ S A + + H V +
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 152 AFDPNSE-YLASIDSIGTVIYWELQS 176
A++P LAS G V +W+ Q
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDD----RICCMAWKPIGNALAVID 297
FL+W+P G +A+ DR+I IW I + + + +AW P GN LA
Sbjct: 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 298 VMGKYGVWE 306
+W+
Sbjct: 81 FDATTCIWK 89
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 57 LRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGEFQTNI-------TRFTLPIRV 108
LR H+ L+ +PN + L S S DH++ L+ + + T T +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 109 LAFNK-SGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAFDPNSEY-LASI 163
+A++ S+ + DD+ + + +T + + ++ + H V L+F+P SE+ LA+
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 164 DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAVPGLKNDVVMYD 222
+ TV W+L+ NLK S + + WSP ET LA G + ++D
Sbjct: 297 SADKTVALWDLR------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Query: 223 -------------RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-SLDRQILIWDVGK 268
D +L + G H I SW+PN ++ S S D + +W + +
Sbjct: 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
Query: 269 KLDIDRQ 275
+ D +
Sbjct: 411 NVYNDEE 417
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 57 LRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGEFQTNI-------TRFTLPIRV 108
LR H+ L+ +PN + L S S DH++ L+ + + T T +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 109 LAFNK-SGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAFDPNSEY-LASI 163
+A++ S+ + DD+ + + +T + + ++ + H V L+F+P SE+ LA+
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 164 DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAVPGLKNDVVMYD 222
+ TV W+L+ NLK S + + WSP ET LA G + ++D
Sbjct: 299 SADKTVALWDLR------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Query: 223 -------------RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-SLDRQILIWDVGK 268
D +L + G H I SW+PN ++ S S D + +W + +
Sbjct: 353 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
Query: 269 KLDIDRQ 275
+ D +
Sbjct: 413 NVYNDEE 419
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 34/253 (13%)
Query: 46 DPLLPSNLPKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGEFQTNI----- 99
DP N LR H+ L+ + N S L S S DH+V L+ G + I
Sbjct: 164 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 223
Query: 100 --TRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAF 153
T + + +A++ S+ + DD+ + + +T + ++ ++ H V L+F
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 154 DPNSEY-LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAV 211
+P SE+ LA+ + TV W+L+ NLK S + + WSP ET LA
Sbjct: 284 NPYSEFILATGSADKTVALWDLR------NLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 212 PGLKNDVVMYD-------------RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-SL 257
G + ++D D +L + G H I SW+PN ++ S S
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 258 DRQILIWDVGKKL 270
D + IW + + +
Sbjct: 398 DNIMQIWQMAENI 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 57 LRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGEFQTNI-------TRFTLPIRV 108
LR H+ L+ +PN + L S S DH++ L+ + + T T +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 109 LAFNK-SGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAFDPNSEY-LASI 163
+A++ S+ + DD+ + + +T + + ++ + H V L+F+P SE+ LA+
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 164 DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAVPGLKNDVVMYD 222
+ TV W+L+ NLK S + + WSP ET LA G + ++D
Sbjct: 301 SADKTVALWDLR------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Query: 223 -------------RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-SLDRQILIWDVGK 268
D +L + G H I SW+PN ++ S S D + +W + +
Sbjct: 355 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
Query: 269 KLDIDRQ 275
+ D +
Sbjct: 415 NVYNDEE 421
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 27/244 (11%)
Query: 56 ILRHHRDGVTALAL------SPNSTCLASGSIDHSVKLYKF----PGGEF---QTNITRF 102
IL H D VT++ + +S L SGS D +V ++K G F +T
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 103 TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLAS 162
+ LA ++ ++ D+ ++L + G+ + GH+ V +AF P++ + S
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 163 IDSIGTVIYWELQ-----SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND 217
+ + W + S E N + P + P A G
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 218 VVMYDRDTAEKLFSLR---GDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR 274
+ +++ + F +R H + LS SPNGKY+AT D+++LIWD+ L +
Sbjct: 196 LKVWNTN-----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-LNLTYPQ 249
Query: 275 QKFD 278
++FD
Sbjct: 250 REFD 253
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLY-----KFPGGEFQTNITRFTLPIRVLAF 111
+ H V L++SPN +A+G D + ++ +P EF T I +AF
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST-----INQIAF 263
Query: 112 NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
N +A G D+G+K+ N + S A V P+T
Sbjct: 264 NPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPIT 300
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKS 114
K L H V+ LALS + S S D +++L+ G + +AF+
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 115 GSMLAAAGDDEGIKLINTI-DGSIARVLK-GHKGPVTGLAF----------DPNSEYLAS 162
+ +AG + IKL N + + + K H V+ + + P + Y AS
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 163 IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222
+ G + W ++ + S++N LS SP+G+ +A G ++++D
Sbjct: 190 VGWDGRLKVWNTNF--------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 34/242 (14%)
Query: 57 LRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGG-------EFQTNITRFTLPIRV 108
LR H+ L+ +PN S L S S DH++ L+ + +T T T +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 109 LAFNK-SGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAFDPNSEY-LASI 163
++++ S+ + DD+ + + +T + ++ + H V L+F+P SE+ LA+
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 164 DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAVPGLKNDVVMYD 222
+ TV W+L+ NLK S + + WSP ET LA G + ++D
Sbjct: 293 SADKTVALWDLR------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Query: 223 -------------RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-SLDRQILIWDVGK 268
D +L + G H I SW+PN ++ S S D + +W + +
Sbjct: 347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Query: 269 KL 270
+
Sbjct: 407 NI 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 46 DPLLPSNLPKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGEFQTNI----- 99
DP N LR H+ L+ + N S L S S DH+V L+ G + I
Sbjct: 164 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 223
Query: 100 --TRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAF 153
T + + +A++ S+ + DD+ + + +T + ++ ++ H V L+F
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 154 DPNSEY-LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAV 211
+P SE+ LA+ + TV W+L+ NLK S + + WSP ET LA
Sbjct: 284 NPYSEFILATGSADKTVALWDLR------NLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 212 PGLKNDVVMYD-------------RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-SL 257
G + ++D D +L + G H I SW+PN ++ S S
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 258 DRQILIWDVGKKL 270
D IW + +
Sbjct: 398 DNIXQIWQXAENI 410
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 18/217 (8%)
Query: 76 LASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG 135
+ SGS D++V +++ P +F++ T + + +N GS+ A+ G D I L N +DG
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 136 SIARVLK-------GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAP 188
+ V + H G V GL + P+ +AS + T+ W + + + +++ P
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK----VEKTIP 278
Query: 189 DIGSDPSSMNV-LSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP 247
+G+ + + W+ + V N + + + +R H + I LS S
Sbjct: 279 -VGTRIEDQQLGIIWT---KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Query: 248 NGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCM 284
+GK + ++ + I WD+ I + F D M
Sbjct: 335 DGKTLFSADAEGHINSWDI--STGISNRVFPDVHATM 369
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 22/225 (9%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE--FQTNITRFTLPIRVLAFN 112
+I H T SP+ ASG + +V+++ +T I F+ P++ ++++
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 112
Query: 113 KSGSMLAAAGDDE----GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY-LASIDSIG 167
+AA G+ + L +T G+ L G + + F P+ + + S
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Query: 168 TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE 227
TV +E G + G ++ + ++PDG A G +V+Y+
Sbjct: 171 TVAIFE---GPPF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223
Query: 228 KLFSLRGD------HVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
K D H + L+WSP+G +A++S D+ I IW+V
Sbjct: 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFT-LPIRVLAFNKSGSML 118
H V L SP+ T +AS S D ++K++ + + I T + + L + L
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 119 AAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGR 178
+ + I +N GSI +V GH +T L+ + + L S D+ G + W++ +G
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 179 ELHNLKRVAPDI 190
RV PD+
Sbjct: 358 S----NRVFPDV 365
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 236 HVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLD 271
H + +SWSP+ +AT SLD +++W++ K D
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 108/251 (43%), Gaps = 37/251 (14%)
Query: 44 IHDPLLPSNLPKILRH---HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNIT 100
+++P LP + L H V + S + LA+G + + ++Y+ G ++
Sbjct: 44 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLS 102
Query: 101 RFT------------------LPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK 142
+ L IR + F+ G LA +D I++ + + I +L+
Sbjct: 103 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
Query: 143 GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSW 202
GH+ + L + P+ + L S TV W+L++G+ L S + ++
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--------SIEDGVTTVAV 214
Query: 203 SP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGD------HVQPICFLSWSPNGKYMATS 255
SP DG+ +A L V ++D +T + L + H + + ++ +G+ + +
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274
Query: 256 SLDRQILIWDV 266
SLDR + +W++
Sbjct: 275 SLDRSVKLWNL 285
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 62 DGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNI-------TRFTLPIRVLAFNK 113
DGVT +A+SP + +A+GS+D +V+++ G + T + + F +
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 114 SGSMLAAAGDDEGIKLINTID------------GSIARVLKGHKGPVTGLAFDPNSEYLA 161
G + + D +KL N + G+ GHK V +A N EY+
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 162 SIDSIGTVIYWELQSGRELHNLK 184
S V++W+ +SG L L+
Sbjct: 327 SGSKDRGVLFWDKKSGNPLLMLQ 349
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 87/214 (40%), Gaps = 13/214 (6%)
Query: 64 VTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD 123
+ ++ SP+ LA+G+ D ++++ + + I L + SG L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 124 DEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHN 182
D +++ + G + L G VT +A P + +Y+A+ V W+ ++G +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 183 LKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRG-------- 234
L S+ + ++ DG+++ L V +++ A +
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 235 ---DHVQPICFLSWSPNGKYMATSSLDRQILIWD 265
H + ++ + N +Y+ + S DR +L WD
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN----------ITRFTLPIRVL 109
H+D V ++ + + + SGS+D SVKL+ +++ +T VL
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 110 --AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLA 152
A ++ + + D G+ + G+ +L+GH+ V +A
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 114 SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP--VTGLAFDPNSEYLASIDSIGTVIY 171
SG++LA A D+ + L + G I ++L+ + ++ +A+ YLA S V
Sbjct: 115 SGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W++Q + L N+ + +GS LSW + L+ + +D AE +
Sbjct: 174 WDVQQQKRLRNMTSHSARVGS-------LSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 224
Query: 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIW 264
H Q +C L W+P+G+++A+ D + +W
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 26/222 (11%)
Query: 80 SIDHSVKLYKFPGGEFQTNITRFTLP---IRVLAFNKSGSMLAAAGDDEGIKLINTIDGS 136
++D+SV L+ G+ + + P I +A+ K G+ LA ++L +
Sbjct: 122 ALDNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180
Query: 137 IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVA----PDIGS 192
R + H V L+++ Y+ S S +SG H+ RVA +
Sbjct: 181 RLRNMTSHSARVGSLSWN---SYILSSGS---------RSGHIHHHDVRVAEHHVATLSG 228
Query: 193 DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE------KLFSLRGDHVQPICFLSWS 246
+ L W+PDG LA G N V ++ E + F+ V+ + + W
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 247 PNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKP 288
N + DR I IW+V + ++C + W P
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
Query: 22 SILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI 81
S+ W ++ ++L +SS + + D L + H +LS NS L+SGS
Sbjct: 152 SVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSR 207
Query: 82 DHSVKLYKFPGGEFQT-NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140
+ + E ++ + + L + G LA+ G+D + + + G V
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 141 ----LKGHKGPVTGLAFDP-NSEYLASIDSIG--TVIYWELQSGRELHNLKRVAPDIGSD 193
H+G V +A+ P S LA+ + W + SG L A D S
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----SAVDAHSQ 322
Query: 194 PSSMNVLSWSPD-GETLAVPGL-KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
S + WSP E ++ G +N +V++ T K+ L+G H + L+ SP+G
Sbjct: 323 VCS---ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGAT 378
Query: 252 MATSSLDRQILIW 264
+A+++ D + +W
Sbjct: 379 VASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 114 SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP--VTGLAFDPNSEYLASIDSIGTVIY 171
SG++LA A D+ + L + G I ++L+ + ++ +A+ YLA S V
Sbjct: 126 SGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 184
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W++Q + L N+ + +GS LSW + L+ + +D AE +
Sbjct: 185 WDVQQQKRLRNMTSHSARVGS-------LSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 235
Query: 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIW 264
H Q +C L W+P+G+++A+ D + +W
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 26/222 (11%)
Query: 80 SIDHSVKLYKFPGGEFQTNITRFTLP---IRVLAFNKSGSMLAAAGDDEGIKLINTIDGS 136
++D+SV L+ G+ + + P I +A+ K G+ LA ++L +
Sbjct: 133 ALDNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 191
Query: 137 IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVA----PDIGS 192
R + H V L+++ Y+ S S +SG H+ RVA +
Sbjct: 192 RLRNMTSHSARVGSLSWN---SYILSSGS---------RSGHIHHHDVRVAEHHVATLSG 239
Query: 193 DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE------KLFSLRGDHVQPICFLSWS 246
+ L W+PDG LA G N V ++ E + F+ V+ + + W
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 247 PNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKP 288
N + DR I IW+V + ++C + W P
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 341
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
Query: 22 SILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI 81
S+ W ++ ++L +SS + + D L + H +LS NS L+SGS
Sbjct: 163 SVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSR 218
Query: 82 DHSVKLYKFPGGEFQ-TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140
+ + E ++ + + L + G LA+ G+D + + + G V
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 141 ----LKGHKGPVTGLAFDP-NSEYLASIDSIG--TVIYWELQSGRELHNLKRVAPDIGSD 193
H+G V +A+ P S LA+ + W + SG L A D S
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----SAVDAHSQ 333
Query: 194 PSSMNVLSWSPD-GETLAVPGL-KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
S + WSP E ++ G +N +V++ T K+ L+G H + L+ SP+G
Sbjct: 334 VCS---ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGAT 389
Query: 252 MATSSLDRQILIW 264
+A+++ D + +W
Sbjct: 390 VASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 114 SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP--VTGLAFDPNSEYLASIDSIGTVIY 171
SG++LA A D+ + L + G I ++L+ + ++ +A+ YLA S V
Sbjct: 35 SGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W++Q + L N+ + +GS LSW + L+ + +D AE +
Sbjct: 94 WDVQQQKRLRNMTSHSARVGS-------LSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 144
Query: 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIW 264
H Q +C L W+P+G+++A+ D + +W
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 26/222 (11%)
Query: 80 SIDHSVKLYKFPGGEFQTNITRFTLP---IRVLAFNKSGSMLAAAGDDEGIKLINTIDGS 136
++D+SV L+ G+ + + P I +A+ K G+ LA ++L +
Sbjct: 42 ALDNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100
Query: 137 IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVA----PDIGS 192
R + H V L+++ Y+ S S +SG H+ RVA +
Sbjct: 101 RLRNMTSHSARVGSLSWN---SYILSSGS---------RSGHIHHHDVRVAEHHVATLSG 148
Query: 193 DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE------KLFSLRGDHVQPICFLSWS 246
+ L W+PDG LA G N V ++ E + F+ V+ + + W
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 247 PNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKP 288
N + DR I IW+V + ++C + W P
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 250
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 25/254 (9%)
Query: 22 SILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHH-RDGVTALALSPNSTCLASGS 80
S+ W ++ ++L +SS + + D L + H R G +LS NS L+SGS
Sbjct: 72 SVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSARVG----SLSWNSYILSSGS 126
Query: 81 IDHSVKLYKFPGGEFQT-NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR 139
+ + E ++ + + L + G LA+ G+D + + + G
Sbjct: 127 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 140 V----LKGHKGPVTGLAFDP-NSEYLASIDSIG--TVIYWELQSGRELHNLKRVAPDIGS 192
V H+G V +A+ P S LA+ + W + SG L A D S
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----SAVDAHS 241
Query: 193 DPSSMNVLSWSPD-GETLAVPGL-KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK 250
S + WSP E ++ G +N +V++ T K+ L+G H + L+ SP+G
Sbjct: 242 QVCS---ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGA 297
Query: 251 YMATSSLDRQILIW 264
+A+++ D + +W
Sbjct: 298 TVASAAADETLRLW 311
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 22/205 (10%)
Query: 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTC 75
++A S+ W+ +++++ S I HD + + L H V L +P+
Sbjct: 108 HSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164
Query: 76 LASGSIDHSVKLYKFPGGE-----FQTNITRFTLPIRVLAFNKSGSMLAAAG---DDEGI 127
LASG D+ V ++ GE QT T+ ++ +A+ S + A G D I
Sbjct: 165 LASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 128 KLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG--TVIYWELQSGRELHNLKR 185
++ N G+ + H V + + P+ + L S ++ W+ + ++ LK
Sbjct: 224 RIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK- 281
Query: 186 VAPDIGSDPSSMNVLSWSPDGETLA 210
S + L+ SPDG T+A
Sbjct: 282 ------GHTSRVLSLTMSPDGATVA 300
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 107 RVLAFNKSGSMLAAAGDDEGIKLINTI--DGSIARVLK--GHKGPVTGLAFDPNSEYLAS 162
++ +F+ S +LA D IKL++ D ++ VL HK + +A+ P++ LA+
Sbjct: 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA 75
Query: 163 IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222
TV W + + + I + + ++WS DG LA V +++
Sbjct: 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 223 RDTAEKLF---SLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDD 279
D + + + S+ +H Q + + W P+ +A+SS D + IW + +DD
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW----------KDYDD 185
Query: 280 RICCMA 285
C+A
Sbjct: 186 DWECVA 191
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 140 VLKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
++ GH PV +A+ P N +AS TV+ WE+ G + L+ + +
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 199 VLSWSPDGE-TLAVPGLKNDVVMYDRDTAEKLFSLRGD-HVQPICFLSWSPNGKYMATSS 256
+++W P + L G N ++++D T + +L D H I + WS +G + TS
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 257 LDRQILI 263
D+++ +
Sbjct: 196 RDKRVRV 202
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 143 GHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLS 201
GH PV +A+ P N +AS TV+ WE+ G + L+ + + +++
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 202 WSPDGE-TLAVPGLKNDVVMYDRDTAEKLFSLRGD-HVQPICFLSWSPNGKYMATSSLDR 259
W P + L G N ++++D T + +L D H I + WS +G + TS D+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 260 QILI 263
++ +
Sbjct: 199 RVRV 202
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 64 VTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS-MLAAA 121
+T L +P N+ + S++ + +L F G + + T+ I + + S S +
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT 226
Query: 122 GDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG-TVIYWELQSGRE- 179
GD+ G ++ +DG L+ HK VT +A +P ++ + S+ TV W+L+ R
Sbjct: 227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286
Query: 180 ---LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMY 221
L++L P +N +SPDG L K+++ +Y
Sbjct: 287 ASFLYSLPHRHP--------VNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 64 VTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS-MLAAA 121
+T L +P N+ + S++ + +L F G + + T+ I + + S S +
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT 226
Query: 122 GDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG-TVIYWELQSGRE- 179
GD+ G ++ +DG L+ HK VT +A +P ++ + S+ TV W+L+ R
Sbjct: 227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286
Query: 180 ---LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMY 221
L++L P +N +SPDG L K+++ +Y
Sbjct: 287 ASFLYSLPHRHP--------VNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 130 INTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPD 189
N D R L+GH G V L + P ++ S G +I W + ++ H +K P
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW 110
Query: 190 IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMY------DRDTAEKLFSLRGDHVQPICFL 243
+ +++P+G+++A GL + ++ DRD + + H
Sbjct: 111 VME-------CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 244 SWSPNGKY-MATSSLDRQILIWDV--GKKLDIDRQKF 277
+ P+ + + T S D+ ++WDV G+++ I +F
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 32 LVTASSSETTISIHDPLLPS---NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88
L+ A S + D LL NL + H ++ L LS + + L +GS D ++K++
Sbjct: 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Query: 89 KFPG 92
F G
Sbjct: 372 AFSG 375
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 64 VTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS-MLAAA 121
+T L +P N+ + S++ + +L F G + + T+ I + + S S +
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT 227
Query: 122 GDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG-TVIYWELQSGRE- 179
GD+ G ++ +DG L+ HK VT +A +P ++ + S+ TV W+L+ R
Sbjct: 228 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 287
Query: 180 ---LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMY 221
L++L P +N +SPDG L K+++ +Y
Sbjct: 288 ASFLYSLPHRHP--------VNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 20/224 (8%)
Query: 14 CGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPN- 72
G+ + S+ D++A +++ S +T I + L H D V+ + + PN
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKT---IKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 73 -----STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGI 127
S + S D VK + + + + I L + G+++A+AG D I
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 128 KLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVA 187
L N L V LAF PN +LA+ + G ++ L + +L+
Sbjct: 221 XLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVF-SLDPQYLVDDLR--- 275
Query: 188 PDIG-----SDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA 226
P+ ++P +++ L+WS DG+TL N + ++ TA
Sbjct: 276 PEFAGYSKAAEPHAVS-LAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 47/273 (17%)
Query: 53 LPKILRHHRDGVTALALS---PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109
L L H VT+LA S PN L S S D ++ +K G + +F +P+R
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDD-----QKFGVPVRSF 61
Query: 110 ----------AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159
G+ +A D+ ++L + G + GHK V + D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 160 LASIDSIGTVIYWELQSGRELHNL---------KRVAPDIGSDPSSMNVLSWSPDGETLA 210
+ S T+ W ++ G+ L L RV P+ +D S+ ++S
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--------- 171
Query: 211 VPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
G V ++ + F + D H I L+ SP+G +A++ D +I +W++
Sbjct: 172 -AGNDKXVKAWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
Query: 268 KKLDIDRQKFDDRICCMAWKPIGNALAVIDVMG 300
K D + +A+ P LA G
Sbjct: 227 AKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
++S + T+ + D + + H D V ++ + ++ + SGS D ++K++ G
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSD-VXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 95 FQTNITR--FTLPIRVLAFNKSGS---MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
T + + +RV+ K+ + +AG+D+ +K N I GH +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN 200
Query: 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L P+ +AS G + W L + + + L S + L++SP+ L
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL--------SAQDEVFSLAFSPNRYWL 252
Query: 210 AVPGLKNDVVM-----YDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILI 263
A V Y D F+ +P L+WS +G+ + D I +
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 264 WDV 266
W V
Sbjct: 313 WQV 315
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 101 RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYL 160
+ T + LA++ G+ + ++ ++L N G++ VL H+ P+ + ++ + ++
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 161 ASIDSIGTVIYWELQSGRELHNLK-------RVAPDIGSDPSSMNV-LSWSPDGETLAVP 212
S+D I W + SG + + + + + S S+ V + W D + +P
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIP 223
Query: 213 GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
G K + +Y L G H PI L ++ K + ++S D + IW G
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN-DVVMYDRDTAEKL 229
YW+L EL + ++ G + + L+WS DG ++ V G++N ++ ++++ A L
Sbjct: 85 YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI-VTGVENGELRLWNKTGA--L 141
Query: 230 FSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
++ H PI + W+ +G ++ + ++ ++W+V
Sbjct: 142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLA-SI 163
PI VL FN + +L +A DD +++ + +G+ GH + ++ + + ++ S+
Sbjct: 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSM 308
Query: 164 DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222
D G+V W L+ L L V D + S DG+ AV + V +YD
Sbjct: 309 D--GSVRLWSLKQ-NTLLALSIV------DGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 141 LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVL 200
L GH GP++ L F+ ++ L S GT+ W +G + + I S
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS-------A 295
Query: 201 SWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP--------NGKYM 252
SW D + V+ D + +L+SL+ + + + + P +G+
Sbjct: 296 SWVGD----------DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKY 345
Query: 253 ATSSLDRQILIWDVGKKLDIDRQKFDDR 280
A + +D Q+ ++D+ K R + +R
Sbjct: 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNR 373
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 47/261 (18%)
Query: 53 LPKILRHHRDGVTALALS---PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109
L L H VT+LA S PN L S S D ++ +K G + +F +P+R
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDD-----QKFGVPVRSF 61
Query: 110 ----------AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159
G+ +A D+ ++L + G + GHK V + D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 160 LASIDSIGTVIYWELQSGRELHNL---------KRVAPDIGSDPSSMNVLSWSPDGETLA 210
+ S T+ W ++ G+ L L RV P+ +D S+ ++S
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--------- 171
Query: 211 VPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
ND ++ + + F + D H I L+ SP+G +A++ D +I++W++
Sbjct: 172 ---AGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 268 KKLDIDRQKFDDRICCMAWKP 288
K + D + +A+ P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSP 247
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
++S + T+ + D + + H D V ++ + ++ + SGS D ++K++ G
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 95 FQTNITR--FTLPIRVLAFNKSGS---MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
T + + +RV+ K+ + +AG+D+ +K N I GH +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L P+ +AS G ++ W L + + ++ L S + L++SP+ L
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--------SAQDEVFSLAFSPNRYWL 252
Query: 210 AVPGLKNDVVM-----YDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILI 263
A V Y D F+ +P L+WS +G+ + D I +
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 264 WDV 266
W V
Sbjct: 313 WQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 47/261 (18%)
Query: 53 LPKILRHHRDGVTALALS---PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109
L L H VT+LA S PN L S S D ++ +K G + +F +P+R
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDD-----QKFGVPVRSF 61
Query: 110 ----------AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159
G+ +A D+ ++L + G + GHK V + D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 160 LASIDSIGTVIYWELQSGRELHNL---------KRVAPDIGSDPSSMNVLSWSPDGETLA 210
+ S T+ W ++ G+ L L RV P+ +D S+ ++S
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--------- 171
Query: 211 VPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
ND ++ + + F + D H I L+ SP+G +A++ D +I++W++
Sbjct: 172 ---AGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 268 KKLDIDRQKFDDRICCMAWKP 288
K + D + +A+ P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSP 247
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
++S + T+ + D + + H D V ++ + ++ + SGS D ++K++ G
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 95 FQTNITR--FTLPIRVLAFNKSGS---MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
T + + +RV+ K+ + +AG+D+ +K N I GH +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L P+ +AS G ++ W L + + ++ L S + L++SP+ L
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--------SAQDEVFSLAFSPNRYWL 252
Query: 210 AVPGLKNDVVM-----YDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILI 263
A V Y D F+ +P L+WS +G+ + D I +
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 264 WDV 266
W V
Sbjct: 313 WQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 108/273 (39%), Gaps = 47/273 (17%)
Query: 53 LPKILRHHRDGVTALALS---PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109
L L H VT+LA S PN L S S D ++ +K G + +F +P+R
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDD-----QKFGVPVRSF 61
Query: 110 ----------AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159
G+ +A D+ ++L + G + GHK V + D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 160 LASIDSIGTVIYWELQSGRELHNL---------KRVAPDIGSDPSSMNVLSWSPDGETLA 210
+ S T+ W ++ G+ L L RV P+ +D S+ ++S
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--------- 171
Query: 211 VPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
ND ++ + + F + D H I L+ SP+G +A++ D +I++W++
Sbjct: 172 ---AGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 268 KKLDIDRQKFDDRICCMAWKPIGNALAVIDVMG 300
K + D + +A+ P LA G
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 20/241 (8%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
++S + T+ + D + + H D V ++ + ++ + SGS D ++K++ G
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 95 FQTNITR--FTLPIRVLAFNKSGS---MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
T + + +RV+ K+ + +AG+D+ +K N I GH +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L P+ +AS G ++ W L + + ++ L S + L++SP+ L
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--------SAQDEVFSLAFSPNRYWL 252
Query: 210 AVPGLKNDVVM-----YDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILI 263
A V Y D F+ +P L+WS +G+ + D I +
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 264 W 264
W
Sbjct: 313 W 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 47/261 (18%)
Query: 53 LPKILRHHRDGVTALALS---PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109
L L H VT+LA S PN L S S D ++ +K G + +F +P+R
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDD-----QKFGVPVRSF 61
Query: 110 ----------AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159
G+ +A D+ ++L + G + GHK V + D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 160 LASIDSIGTVIYWELQSGRELHNL---------KRVAPDIGSDPSSMNVLSWSPDGETLA 210
+ S T+ W ++ G+ L L RV P+ +D S+ ++S
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--------- 171
Query: 211 VPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
ND ++ + + F + D H I L+ SP+G +A++ D +I++W++
Sbjct: 172 ---AGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 268 KKLDIDRQKFDDRICCMAWKP 288
K + D + +A+ P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSP 247
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
++S + T+ + D + + H D V ++ + ++ + SGS D ++K++ G
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 95 FQTNITR--FTLPIRVLAFNKSGS---MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
T + + +RV+ K+ + +AG+D+ +K N I GH +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L P+ +AS G ++ W L + + ++ L S + L++SP+ L
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--------SAQDEVFSLAFSPNRYWL 252
Query: 210 AVPGLKNDVVM-----YDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILI 263
A V Y D F+ +P L+WS +G+ + D I +
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 264 WDV 266
W V
Sbjct: 313 WQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 47/261 (18%)
Query: 53 LPKILRHHRDGVTALALS---PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109
L L H VT+LA S PN L S S D ++ +K G + +F +P+R
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDD-----QKFGVPVRSF 55
Query: 110 ----------AFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159
G+ +A D+ ++L + G + GHK V + D +
Sbjct: 56 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 115
Query: 160 LASIDSIGTVIYWELQSGRELHNL---------KRVAPDIGSDPSSMNVLSWSPDGETLA 210
+ S T+ W ++ G+ L L RV P+ +D S+ ++S
Sbjct: 116 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--------- 165
Query: 211 VPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267
ND ++ + + F + D H I L+ SP+G +A++ D +I++W++
Sbjct: 166 ---AGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 268 KKLDIDRQKFDDRICCMAWKP 288
K + D + +A+ P
Sbjct: 221 AKKAMYTLSAQDEVFSLAFSP 241
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 35 ASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94
++S + T+ + D + + H D V ++ + ++ + SGS D ++K++ G
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIKGQC 134
Query: 95 FQTNITR--FTLPIRVLAFNKSGS---MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
T + + +RV+ K+ + +AG+D+ +K N I GH +
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 194
Query: 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L P+ +AS G ++ W L + + ++ L S + L++SP+ L
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--------SAQDEVFSLAFSPNRYWL 246
Query: 210 AVPGLKNDVVM-----YDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILI 263
A V Y D F+ +P L+WS +G+ + D I +
Sbjct: 247 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 306
Query: 264 WDV 266
W V
Sbjct: 307 WQV 309
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I L F SG L ++ D +K+ + DGS R L GH+ VT +A + S
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 166 IGTVIYWELQSGRELHNLKR 185
GT+ WE +G +H R
Sbjct: 199 DGTIRLWECGTGTTIHTFNR 218
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I L F SG L ++ D +K+ + DGS R L GH+ VT +A + S
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 166 IGTVIYWELQSGRELHNLKR 185
GT+ WE +G +H R
Sbjct: 202 DGTIRLWECGTGTTIHTFNR 221
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 32 LVTASSSETTISIHDPLLPSN--LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYK 89
++ S + +I++ D P++ L ++L HR V + ASG D ++K++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWN 282
Query: 90 FPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149
EF + I L + ++ + D I+L + G+ RVL+GH+ V
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 150 GLAFDPNSEYLASIDSIGTVIYWEL 174
+ FD + D G + W+L
Sbjct: 341 CIRFDNKRIVSGAYD--GKIKVWDL 363
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 29/224 (12%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKS 114
+IL H V L L + + +GS D +V+++ GE + + L FN
Sbjct: 167 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-- 222
Query: 115 GSMLAAAGDDEGIKLINT---IDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171
M+ D I + + D ++ RVL GH+ V + FD +Y+ S T+
Sbjct: 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 280
Query: 172 WELQSG---RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVV-MYDRDTAE 227
W + R L+ KR + L + + L V G ++ + ++D +
Sbjct: 281 WNTSTCEFVRTLNGHKR----------GIACLQYR---DRLVVSGSSDNTIRLWDIECGA 327
Query: 228 KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLD 271
L L G C + K + + + D +I +WD+ LD
Sbjct: 328 CLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWDLVAALD 368
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 124 DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNL 183
D IK+ + R+L GH G V L +D S DS TV W++ +G L+ L
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDS--TVRVWDVNTGEMLNTL 209
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS 78
S C L D Q + SS +TT ++ D H D V +L+L+P++ S
Sbjct: 147 SCCRFLDDNQ----IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVS 201
Query: 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131
G+ D S KL+ G + T I + F +G+ A DD +L +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
R L+GH + + + +S L S G +I W+ + ++H I S +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-------IPLRSSWVM 101
Query: 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP--NGKYMATSS 256
+++P G +A GL N +Y+ T E + + +LS + + TSS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 257 LDRQILIWDV 266
D +WD+
Sbjct: 162 GDTTCALWDI 171
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS 78
S C L D Q + SS +TT ++ D H D V +L+L+P++ S
Sbjct: 147 SCCRFLDDNQ----IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVS 201
Query: 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131
G+ D S KL+ G + T I + F +G+ A DD +L +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
R L+GH + + + +S L S G +I W+ + ++H I S +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-------IPLRSSWVM 101
Query: 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP--NGKYMATSS 256
+++P G +A GL N +Y+ T E + + +LS + + TSS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 257 LDRQILIWDV 266
D +WD+
Sbjct: 162 GDTTCALWDI 171
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS 78
S C L D Q + SS +TT ++ D H D V +L+L+P++ S
Sbjct: 147 SCCRFLDDNQ----IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVS 201
Query: 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131
G+ D S KL+ G + T I + F +G+ A DD +L +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
R L+GH + + + +S L S G +I W+ + ++H I S +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-------IPLRSSWVM 101
Query: 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP--NGKYMATSS 256
+++P G +A GL N +Y+ T E + + +LS + + TSS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 257 LDRQILIWDV 266
D +WD+
Sbjct: 162 GDTTCALWDI 171
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS 78
S C L D Q + SS +TT ++ D H D V +L+L+P++ S
Sbjct: 147 SCCRFLDDNQ----IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVS 201
Query: 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131
G+ D S KL+ G + T I + F +G+ A DD +L +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
R L+GH + + + +S L S G +I W+ + ++H I S +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-------IPLRSSWVM 101
Query: 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP--NGKYMATSS 256
+++P G +A GL N +Y+ T E + + +LS + + TSS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 257 LDRQILIWDV 266
D +WD+
Sbjct: 162 GDTTCALWDI 171
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS 78
S C L D Q + SS +TT ++ D H D V +L+L+P++ S
Sbjct: 158 SCCRFLDDNQ----IVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVS 212
Query: 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131
G+ D S KL+ G + T I + F +G+ A DD +L +
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198
R L+GH + + + +S L S G +I W+ + ++H I S +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-------IPLRSSWVM 112
Query: 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP--NGKYMATSS 256
+++P G +A GL N +Y+ T E + + +LS + + TSS
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 172
Query: 257 LDRQILIWDV 266
D +WD+
Sbjct: 173 GDTTCALWDI 182
>pdb|3FGB|A Chain A, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b.
pdb|3FGB|B Chain B, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b
Length = 361
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 151 LAFDPNSEYLASIDSI-GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGE-- 207
L F PN Y I+ + GTVI +E G EL ++ +A D S ++ SPDG+
Sbjct: 208 LTFAPNGSYAYLINELSGTVIAFEYNDG-ELKEIQTIAADTVGAKGSGDI-HISPDGKFL 265
Query: 208 ----TLAVPGLKNDVVMYDRDTAEKL-FSLRGDHVQPICFLSWSPNGKYMATSSLDRQIL 262
L GL + + K+ + L G H P F+ +PNGKY+ + D ++
Sbjct: 266 YASNRLKADGLAIFSIHPENGXLTKVGYQLTGIH--PRNFI-ITPNGKYLLVACRDSNVI 322
Query: 263 -IW----DVGKKLDIDRQKFDDRICCMAWKPI 289
++ D G DI + D+ C+ + P+
Sbjct: 323 QVYERDTDTGLLTDIRKDIKVDKPVCIKFVPL 354
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 99 ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE 158
+T P+ + +NK G +L + D + +++G L GH G + + D ++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 159 YLASIDSIGTVIYWELQSGRELHNLKRVAP------------------DIGSDPSSMNVL 200
Y + + ++ W++ +G+ + K P ++ +P S+N+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 201 SWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQ 260
D T +++ + K+ + G + WS GKY+ D +
Sbjct: 148 EIERDSAT-------HELTKVSEEPIHKIITHEG--LDAATVAGWSTKGKYIIAGHKDGK 198
Query: 261 ILIWDV 266
I +DV
Sbjct: 199 ISKYDV 204
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 83/223 (37%), Gaps = 16/223 (7%)
Query: 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116
L H +T + + L S S D S ++ GE + T I + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY-LASIDSI----GTVIY 171
D IKL + +G K PV + F P Y LA +D++ G++
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 172 WELQSGRELHNLKRVAPD--------IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDR 223
+E++ H L +V+ + G D ++ V WS G+ + + YD
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAAT--VAGWSTKGKYIIAGHKDGKISKYDV 204
Query: 224 DTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
+ H + I + +SP+ Y TSS D + DV
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 76 LASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG 135
+ SGS D +++++ G+ + +R + ++ G + + D +K+ +
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETE 269
Query: 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPS 195
+ L+GH V L FD S+D+ ++ W++++G +H L S S
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDT--SIRVWDVETGNCIHTL----TGHQSLTS 323
Query: 196 SMNVLSWSPDGETLAVPGLKNDVV-MYDRDTAEKLFSLRG--DHVQPICFLSWSPNGKYM 252
M + + + V G + V ++D T + L +L+G H + L ++ N ++
Sbjct: 324 GMEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FV 375
Query: 253 ATSSLDRQILIWDV 266
TSS D + +WD+
Sbjct: 376 ITSSDDGTVKLWDL 389
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST 74
G+ A+ + +D + V + + + + + DP + L L+ H + V +L +
Sbjct: 237 GHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQF--DGI 290
Query: 75 CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134
+ SGS+D S++++ G +T + + +L + D +K+ +
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKT 348
Query: 135 GSIARVLKG---HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNL 183
G + L+G H+ VT L F+ N +S D GTV W+L++G + NL
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD--GTVKLWDLKTGEFIRNL 398
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 46/196 (23%)
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I L F G+ + + DD +K+ + + G R L GH G V N S D
Sbjct: 122 ITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 179
Query: 166 IGTVIYWELQSGRELHNL--------------KRVAPDIGSDPSSMNVLSWSPD------ 205
T+ W ++G +H L KRV GS +++ V W +
Sbjct: 180 --TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS--GSRDATLRV--WDIETGQCLH 233
Query: 206 ---GETLAVPGLKND------------VVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK 250
G AV ++ D V ++D +T L +L+G H + L + +G
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGI 290
Query: 251 YMATSSLDRQILIWDV 266
++ + SLD I +WDV
Sbjct: 291 HVVSGSLDTSIRVWDV 306
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Query: 109 LAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGT 168
+ ++ GS L+ + + + + + R + GH+ V L++ N L+S G
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 169 VIYWELQSGRELHNLKRVAPDIGS---DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225
+ + H+++ IG+ S + L+W DG LA G N V ++D +
Sbjct: 198 IHH---------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
Query: 226 AEKLFSLRGDH---VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRIC 282
+ F+ + +H V+ + + W N ++D+QI W+ ++ ++
Sbjct: 249 SIPKFT-KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 283 CMAWKP 288
+ W P
Sbjct: 308 SLIWSP 313
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 7 KLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTA 66
KLR G+ A + W++ H++++ S I HD + ++ L+ H V
Sbjct: 168 KLRT--MAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222
Query: 67 LALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFT-----LPIRVLAFNKSGSMLAAA 121
LA + LASG D+ V+++ + +++I +FT ++ +A+ S L A
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIW-----DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLAT 277
Query: 122 GD---DEGIKLINTIDGSIARVLKGHKGP-VTGLAFDPNSEYLAS 162
G D+ I N G ARV G VT L + P+S+ + S
Sbjct: 278 GGGTMDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEIMS 320
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 29/212 (13%)
Query: 69 LSPNSTCLASGSID-----HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD 123
LS N L+SGS H V++ G Q + + + LA+ G LA+ G+
Sbjct: 182 LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE----VCGLAWRSDGLQLASGGN 237
Query: 124 DEGIKLINTIDGSIARVLK-GHKGPVTGLAFDPNSEYLASIDSIGT----VIYWELQSGR 178
D +++ + SI + K H V +A+ P L + GT + +W +G
Sbjct: 238 DNVVQIWDA-RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA 295
Query: 179 ELHNLKRVAPDIGSDPSSMNVLSWSPDG-ETLAVPGLKND---VVMYDRDTAEKLFSLRG 234
++ + D GS +S L WSP E ++ G ++ + Y K +
Sbjct: 296 RVNTV-----DAGSQVTS---LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347
Query: 235 DHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266
H + + + SP+G+ ++T++ D + W V
Sbjct: 348 -HDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 140 VLKGHKGPVTGLAFDPNSEYLASID------------SIGTVIYWELQSGRELHNLKRVA 187
V G V+ LA S Y+AS+ G V ++++S +L +
Sbjct: 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176
Query: 188 PDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD-RDTAEKLFSLRGDHVQPICFLSWS 246
+G LSW + L+ + +D R ++ +L+G H +C L+W
Sbjct: 177 ARVG-------CLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWR 226
Query: 247 PNGKYMATSSLDRQILIWDVGKKL-DIDRQKFDDRICCMAWKP 288
+G +A+ D + IWD + + + + +AW P
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 7/220 (3%)
Query: 52 NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
++ K + D V + P + + V+L+ + +I P+R F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 112 NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171
+ + DD I++ N G + H + +A P Y+ S TV
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W ++ L G + M V D T A L V ++ + F+
Sbjct: 124 WNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 232 LRGDHVQPICFLSWS--PNGKYMATSSLDRQILIWDVGKK 269
L + + ++ + P+ YM T+S D I IWD K
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 53 LPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
L + H V +A +P + + ASG +D +VK++ G+ N T T R + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY 189
Query: 112 NKSGSM-----LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166
+ + A DD IK+ + S L+GH V+ F P + S
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 167 GTVIYW 172
GT+ W
Sbjct: 250 GTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 7/220 (3%)
Query: 52 NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
++ K + D V + P + + V+L+ + +I P+R F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 112 NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171
+ + DD I++ N G + H + +A P Y+ S TV
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W ++ L G + M V D T A L V ++ + F+
Sbjct: 124 WNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 232 LRGDHVQPICFLSWS--PNGKYMATSSLDRQILIWDVGKK 269
L + + ++ + P+ YM T+S D I IWD K
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 53 LPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
L + H V +A +P + + ASG +D +VK++ G+ N T T R + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY 189
Query: 112 NKSGSM-----LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166
+ + A DD IK+ + S L+GH V+ F P + S
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 167 GTVIYW 172
GT+ W
Sbjct: 250 GTLKIW 255
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 72/263 (27%)
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARV---LKGHKGPV--TGLAFDPNSEYLASIDSIGTV 169
G LA D+ IK+ ++G ++ L GH+GPV A LAS G V
Sbjct: 21 GKRLATCSSDKTIKIFE-VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 170 IYWELQSGR-------ELH----NLKRVAPD----------------------------- 189
+ W+ ++GR +H N + AP
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 190 -IGSDPSSMNVLSWSP-----DGE--------TLAVPGLKNDVVMYDRDTAEKLFSLRGD 235
I + +N SW+P DGE G N V ++ ++ + + L
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 236 ---HVQPICFLSWSPN---GKYMATSSLDRQILIWDVG------KKLDIDRQKFDDRICC 283
H + ++WSP Y+A+ S DR +IW KK + +KF D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 284 MAWKPIGNALAVIDVMGKYGVWE 306
+W GN LA+ K +W+
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLWK 282
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 72/263 (27%)
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARV---LKGHKGPV--TGLAFDPNSEYLASIDSIGTV 169
G LA D+ IK+ ++G ++ L GH+GPV A LAS G V
Sbjct: 23 GKRLATCSSDKTIKIFE-VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 170 IYWELQSGR-------ELH----NLKRVAPD----------------------------- 189
+ W+ ++GR +H N + AP
Sbjct: 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141
Query: 190 -IGSDPSSMNVLSWSP-----DGE--------TLAVPGLKNDVVMYDRDTAEKLFSLRG- 234
I + +N SW+P DGE G N V ++ ++ + + L
Sbjct: 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201
Query: 235 --DHVQPICFLSWSPN---GKYMATSSLDRQILIWDV------GKKLDIDRQKFDDRICC 283
H + ++WSP Y+A+ S DR +IW KK + +KF D +
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 284 MAWKPIGNALAVIDVMGKYGVWE 306
+W GN LA+ K +W+
Sbjct: 262 ASWSLSGNVLALSGGDNKVTLWK 284
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 44/256 (17%)
Query: 76 LASGSIDHSVKLYKFPGGEFQT--NITRFTLPI-RV-LAFNKSGSMLAAAGDDEGIKLIN 131
+A+ S D ++K+++ G + +T P+ RV A K G++LA+ D + +
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 132 TIDGSIAR--VLKGHKGPVTGLAFDPNSEY-----LASIDSIGTVIYWELQSGRELHNLK 184
+G ++ V H V + + P+ EY +AS D +V+ E + +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPH-EYGPMLLVASSDGKVSVV--EFKENGTTSPII 140
Query: 185 RVAPDIGSDPSSMNVLSWSP-----DGE--------TLAVPGLKNDVVMYDRDTAEKLFS 231
A IG +N SW+P DGE G N V ++ ++ + +
Sbjct: 141 IDAHAIG-----VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 232 LRG---DHVQPICFLSWSPN---GKYMATSSLDRQILIWDV------GKKLDIDRQKFDD 279
L H + ++WSP YMA+ S DR +IW KK + +KF D
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 280 RICCMAWKPIGNALAV 295
+ +W GN LA+
Sbjct: 256 VLWRASWSLSGNVLAL 271
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 196 SMNVLSWSPD---GETLAVPGLKNDVVMYD-RDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
S+ LS+SP G L NDV ++ +D+ + + + H P+ + WS +G
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 100
Query: 252 MATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVI 296
+ T+S D+ +WD+ I + D + + W N V+
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM 145
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRV--LAFNKSGSM 117
H V ++ P+ ASGS D + +LY ++ ++ + F+ SG +
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 118 LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLAS 162
L A +D I + + + GS +L GH+ V+ L P+ S
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 32 LVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88
L+ A ++ TI++ D L S + IL H + V+ L +SP+ T SGS DH+++++
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVS-ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/212 (17%), Positives = 86/212 (40%), Gaps = 8/212 (3%)
Query: 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL--AFN 112
K + H + ++A + + + + + S D + L+ G+ + + L A +
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172
++G+ + G D+ + + G + + H+ V + + P+ + AS T +
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232
+L++ RE+ + + G+ + +S G L + ++D ++ L
Sbjct: 268 DLRADREVAIYSKESIIFGASS-----VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322
Query: 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIW 264
G H + L SP+G + S D + +W
Sbjct: 323 FG-HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSS-M 197
R LKGH V + + + + S G VI W+ + + H + P + +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM--------PCTWV 109
Query: 198 NVLSWSPDGETLAVPGLKNDVVMY------DRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251
+++P G +A GL N +Y + + A K S+ H + S++ +
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQ 168
Query: 252 MATSSLDRQILIWDV 266
+ T+S D +WDV
Sbjct: 169 ILTASGDGTCALWDV 183
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 7/220 (3%)
Query: 52 NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
++ K + D V + P + + V+L+ + +I P+R F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 112 NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171
+ + DD I++ N G + H + +A P Y+ S TV
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W ++ L G + M V D T A L V ++ + F+
Sbjct: 124 WNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 232 LRGDHVQPICFLSWS--PNGKYMATSSLDRQILIWDVGKK 269
L + + ++ + P+ YM T+S D I IWD K
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 53 LPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
L + H V +A +P + + ASG +D +VK++ G+ N T T R + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY 189
Query: 112 NKSGSM-----LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166
+ + A DD IK+ + S L+GH V+ F P + S
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 167 GTVIYW 172
GT+ W
Sbjct: 250 GTLKIW 255
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 72/263 (27%)
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARV---LKGHKGPV--TGLAFDPNSEYLASIDSIGTV 169
G LA D+ IK+ ++G ++ L GH+GPV A LAS G V
Sbjct: 21 GKRLATCSSDKTIKIFE-VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 170 IYWELQSGR-------ELH----NLKRVAPD----------------------------- 189
+ W+ ++GR +H N + AP
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 190 -IGSDPSSMNVLSWSP-----DGE--------TLAVPGLKNDVVMYDRDTAEKLFSLRG- 234
I + +N SW+P DGE G N V ++ ++ + + L
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 235 --DHVQPICFLSWSPN---GKYMATSSLDRQILIWDV------GKKLDIDRQKFDDRICC 283
H + ++WSP Y+A+ S DR +IW KK + +KF D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 284 MAWKPIGNALAVIDVMGKYGVWE 306
+W GN LA+ K +W+
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLWK 282
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 24/188 (12%)
Query: 43 SIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRF 102
++ P+ PS + G+ A N+ + + LY F E Q ++
Sbjct: 178 TVESPMTPSQFATSVDISERGLIATGF--NNGTVQISELSTLRPLYNF---ESQHSMINN 232
Query: 103 TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK----------------GHKG 146
+ IR + F+ GS+LA A D I + + H
Sbjct: 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292
Query: 147 PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG 206
V L+F+ + E L S G + +W++++ + L DI + ++L+ G
Sbjct: 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE---DILAVDEHG 349
Query: 207 ETLAVPGL 214
++LA PG+
Sbjct: 350 DSLAEPGV 357
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 24/188 (12%)
Query: 43 SIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRF 102
++ P+ PS + G+ A N+ + + LY F E Q ++
Sbjct: 188 TVESPMTPSQFATSVDISERGLIATGF--NNGTVQISELSTLRPLYNF---ESQHSMINN 242
Query: 103 TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK----------------GHKG 146
+ IR + F+ GS+LA A D I + + H
Sbjct: 243 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 302
Query: 147 PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG 206
V L+F+ + E L S G + +W++++ + L DI + ++L+ G
Sbjct: 303 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE---DILAVDEHG 359
Query: 207 ETLAVPGL 214
++LA PG+
Sbjct: 360 DSLAEPGV 367
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 7/220 (3%)
Query: 52 NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
++ K + D V + P + + V+++ + +I P+R F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 112 NKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171
+ + DD I++ N G + H + +A P Y+ S TV
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231
W ++ L G + M V D T A L V ++ + F+
Sbjct: 124 WNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 232 LRGDHVQPICFLSWS--PNGKYMATSSLDRQILIWDVGKK 269
L + + ++ + P+ YM T+S D I IWD K
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 53 LPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAF 111
L + H V +A +P + + ASG +D +VK++ G+ N T T R + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY 189
Query: 112 NKSGSM-----LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166
+ + A DD IK+ + S L+GH V+ F P + S
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 167 GTVIYW 172
GT+ W
Sbjct: 250 GTLKIW 255
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 44/266 (16%)
Query: 77 ASGSIDHSVKLYKFPGGEFQ--TNITRFTLPI-RV-LAFNKSGSMLAAAGDDEGIKLINT 132
A+ S D ++K+++ G + +T P+ RV A K G++LA+ D + +
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKE 84
Query: 133 IDGSIAR--VLKGHKGPVTGLAFDPNSEY-----LASIDSIGTVIYWELQSGRELHNLKR 185
+G ++ V H V + + P+ EY +AS D +V+ E + +
Sbjct: 85 ENGRWSQIAVHAVHSASVNSVQWAPH-EYGPXLLVASSDGKVSVV--EFKENGTTSPIII 141
Query: 186 VAPDIGSDPSSMNVLSWSP-----DGE--------TLAVPGLKNDVVMYDRDTAEKLFSL 232
A IG +N SW+P DGE G N V ++ ++ + + L
Sbjct: 142 DAHAIG-----VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 233 RG---DHVQPICFLSWSPN---GKYMATSSLDRQILIWDV------GKKLDIDRQKFDDR 280
H + ++WSP Y A+ S DR +IW KK + +KF D
Sbjct: 197 ESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256
Query: 281 ICCMAWKPIGNALAVIDVMGKYGVWE 306
+ +W GN LA+ K +W+
Sbjct: 257 LWRASWSLSGNVLALSGGDNKVTLWK 282
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 140 VLKGHKGPVTGLAFDPNSEYLASIDSIGTVI-YWELQSGRELHNLKRVAPDIGSDPSSMN 198
++K H PV + + + +A+ GT+I ++ +G + +R G D +S+
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRR-----GLDRTSII 228
Query: 199 VLSWSPDGETLAV 211
+ WSPDG LAV
Sbjct: 229 DMRWSPDGSKLAV 241
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165
I + SGS A D+G++ + + ++K H P+ + + S+ +A+
Sbjct: 161 IHITKLQSSGS---ATTQDQGVQQKAILGKGV--LIKAHTNPIKMVRLNRKSDMVATCSQ 215
Query: 166 IGTVI-YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD-- 222
GT+I ++ + G + +R G D + + + WS DG LAV K + +++
Sbjct: 216 DGTIIRVFKTEDGVLVREFRR-----GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270
Query: 223 RDTAEKLFSLRG 234
D K +L+G
Sbjct: 271 NDQDNKRHALKG 282
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 58 RHHRDGVTALALSPN-STCLASGSIDHSVKLY--KFPGGEFQTNITRFTLPIRVLAFNKS 114
R H VT +A SP+ + S S D+ + L+ + P Q + LA++
Sbjct: 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225
Query: 115 GSMLAAAGDDEG-IKLINTIDGSIARVLKGHKGPVTGLAFDPNS-EYLASI 163
S + GD+ G + L++T S H VTGL F P+S +LAS+
Sbjct: 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 185 RVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLS 244
R+ ++ S + L+ SPD + ++ ++D + +G H +
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCID 190
Query: 245 WSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAV 295
S +G + T LD + WD+ + + + F +I + + P G LAV
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241
>pdb|3SCY|A Chain A, Crystal Structure Of A Hypothetical Bacterial 6-
Phosphogluconolactonase (Bf1038) From Bacteroides
Fragilis Nctc 9343 At 1.50 A Resolution
Length = 361
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 24/143 (16%)
Query: 151 LAFDPNSEYLASIDSIG-TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209
L F+ + ++ I+ IG TVI + G L ++ VA D + S ++ SPDG+ L
Sbjct: 216 LIFNSDGKFAYLINEIGGTVIAFRYADGX-LDEIQTVAADTVNAQGSGDI-HLSPDGKYL 273
Query: 210 -AVPGLKND-VVMYDRD----TAEKL-FSLRGDHVQPICFLSWSPNGKYMATSSLDRQI- 261
A LK D V ++ D T K+ + L G H P F+ +PNGKY+ + D +
Sbjct: 274 YASNRLKADGVAIFKVDETNGTLTKVGYQLTGIH--PRNFI-ITPNGKYLLVACRDTNVI 330
Query: 262 ----------LIWDVGKKLDIDR 274
L+ D+ K + +D+
Sbjct: 331 QIFERDQATGLLTDIKKDIKVDK 353
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 60 HRDGVTALALSPNSTCL-ASGSIDHSVKLYKFPGGEFQT----NITRFTLPIRVLAFNKS 114
HR V + P+ T + S S D ++K++ QT N + +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWD--TNTLQTADVFNFEETVYSHHMSPVSTK 155
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY-LASIDSIGTVIYWE 173
++A ++L + GS + +L+GH+ + +++ P +Y LA+ + V W+
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 174 LQSGR------ELHNLKR---VAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD 224
++ + HN K+ V + +N L ++ DG L G N + +++
Sbjct: 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 225 TAE 227
E
Sbjct: 276 NGE 278
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 236 HVQPICFLSWSPNGKY-MATSSLDRQILIWDV 266
H Q I +SWSP Y +AT+S D ++ +WDV
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 115 GSMLAAAGDDEGIKLINTIDGSIARVLK-GHKGPVTGLAFDPNSEYLASIDSIGTV 169
G + A +D I L+ D S +++ K H +T + P+S Y+AS+ + T+
Sbjct: 281 GELAVLASNDNSIALVKLKDLSXSKIFKQAHSFAITEVTISPDSTYVASVSAANTI 336
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 24/171 (14%)
Query: 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV--LKGHKGPVTGLAFDPNSEYLAS 162
PI A+NK + +A ++ + + +V LK H G VTG+ + P+S + +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 163 IDSIGTVIYWELQSGRE------LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN 216
+ W L+ GR + + R A + W+P+ + AV G +
Sbjct: 70 CGTDRNAYVWTLK-GRTWKPTLVILRINRAA----------RCVRWAPNEKKFAV-GSGS 117
Query: 217 DVVMYDRDTAEKLFSLRGDHVQPI----CFLSWSPNGKYMATSSLDRQILI 263
V+ E + + +PI L W PN +A S D + I
Sbjct: 118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
Length = 189
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 799 ETKETPNTTLLISNNNVTARGDVDVSKASTSTERSEMVEPIVPSVKFSLPIFKKKVKSPE 858
E E P L++ NN V +G +V++ +T +EMV ++ L ++ KSP
Sbjct: 42 ENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMV-----AIDQVLDWCRQSGKSPS 96
Query: 859 EI 860
E+
Sbjct: 97 EV 98
>pdb|1HQZ|1 Chain 1, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|2 Chain 2, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|3 Chain 3, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|4 Chain 4, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|5 Chain 5, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|6 Chain 6, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|7 Chain 7, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|8 Chain 8, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|9 Chain 9, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
Length = 141
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 133 IDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGREL---HNLKRVAPD 189
ID ++++G T L PN++ +S G+ + LQ E + L RV+P
Sbjct: 15 IDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFDETKVQYGLARVSPP 74
Query: 190 IGSDPSSMNVLSWSPDGETL 209
GSD + ++ W PD L
Sbjct: 75 -GSDVEKIIIIGWCPDSAPL 93
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 2 KVRSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHR 61
K+ ++ + A K N ++ LV S +T I I+ P + K L H+
Sbjct: 533 KINAISWKPAEKGANE--------EEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHK 584
Query: 62 DGVTALALSPNSTCLASGSIDHSVKLY 88
DGV L ST ++SG+ D +K +
Sbjct: 585 DGVNNLLWETPSTLVSSGA-DACIKRW 610
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK 113
PK+ + DG TA+ + + + L F G ++ R P ++ ++
Sbjct: 409 PKVASANNDGFTAVLTNDDDLLI----------LQSFTGDIIKS--VRLNSPGSAVSLSQ 456
Query: 114 SGSMLAAAGDDEG--IKLINTIDGSIARVLKGH-KGPVTGLAFDPNSEYLASIDSIGTVI 170
+ A G +EG I++ D ++ LK + + ++ P+ Y+A+ D G ++
Sbjct: 457 N---YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKIL 513
Query: 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP----------DGETLAVPGLKNDVVM 220
++LQS RE+ + S +N +SW P + + +A L ++ +
Sbjct: 514 LYDLQS-REVKTSRWAFR-----TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567
Query: 221 YDRDTAEKLFSLRGDHVQPICFLSW-SPNGKYMATSSLDRQILIWDV 266
Y K+ H + L W +P+ + +S D I W+V
Sbjct: 568 YSVKRPXKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 612
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 24/171 (14%)
Query: 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV--LKGHKGPVTGLAFDPNSEYLAS 162
PI A+NK + +A ++ + + +V LK H G VTG+ + P+S + +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 163 IDSIGTVIYWELQSGRE------LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN 216
+ W L+ GR + + R A + W+P+ + AV G +
Sbjct: 70 CGTDRNAYVWTLK-GRTWKPTLVILRINRAA----------RCVRWAPNEKKFAV-GSGS 117
Query: 217 DVVMYDRDTAEKLFSLRGDHVQPI----CFLSWSPNGKYMATSSLDRQILI 263
V+ E + + +PI L W PN +A S D + I
Sbjct: 118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 2 KVRSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHR 61
K+ ++ + A K N ++ LV S +T I I+ P + K L H+
Sbjct: 533 KINAISWKPAEKGANE--------EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584
Query: 62 DGVTALALSPNSTCLASGSIDHSVKLY 88
DGV L ST ++SG+ D +K +
Sbjct: 585 DGVNNLLWETPSTLVSSGA-DACIKRW 610
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK 113
PK+ + DG TA+ + + + L F G ++ R P ++ ++
Sbjct: 409 PKVASANNDGFTAVLTNDDDLLI----------LQSFTGDIIKS--VRLNSPGSAVSLSQ 456
Query: 114 SGSMLAAAGDDEG--IKLINTIDGSIARVLKG-HKGPVTGLAFDPNSEYLASIDSIGTVI 170
+ A G +EG I++ D ++ LK + + ++ P+ Y+A+ D +G ++
Sbjct: 457 N---YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL 513
Query: 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP----------DGETLAVPGLKNDVVM 220
++LQS RE+ + S +N +SW P + + +A L ++ +
Sbjct: 514 LYDLQS-REVKTSRWAFR-----TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567
Query: 221 YDRDTAEKLFSLRGDHVQPICFLSW-SPNGKYMATSSLDRQILIWDV 266
Y K+ H + L W +P+ + +S D I W+V
Sbjct: 568 YSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 612
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 125 EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLK 184
EG +NT+ +ARV G GPVT L D +++ +D +G +++ G L +
Sbjct: 288 EGTDPVNTV--HVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQLWFVSGDGAPLKKIV 344
Query: 185 RV 186
RV
Sbjct: 345 RV 346
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 147 PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPD-IGSDPSSMNVLSWSPD 205
PV + F P ++L + S G + W LQ+ +++ N + D + S N+L +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 206 GETL 209
+T
Sbjct: 313 DDTF 316
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 147 PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPD-IGSDPSSMNVLSWSPD 205
PV + F P ++L + S G + W LQ+ +++ N + D + S N+L +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 206 GETL 209
+T
Sbjct: 313 DDTF 316
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 147 PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPD-IGSDPSSMNVLSWSPD 205
PV + F P ++L + S G + W LQ+ +++ N + D + S N+L +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 206 GETL 209
+T
Sbjct: 313 DDTF 316
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 147 PVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPD-IGSDPSSMNVLSWSPD 205
PV + F P ++L + S G + W LQ+ +++ N + D + S N+L +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 206 GETL 209
+T
Sbjct: 313 DDTF 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,864,593
Number of Sequences: 62578
Number of extensions: 1165623
Number of successful extensions: 3180
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2450
Number of HSP's gapped (non-prelim): 332
length of query: 945
length of database: 14,973,337
effective HSP length: 108
effective length of query: 837
effective length of database: 8,214,913
effective search space: 6875882181
effective search space used: 6875882181
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)