Query 002266
Match_columns 945
No_of_seqs 941 out of 3391
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 20:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1274 WD40 repeat protein [G 100.0 3E-133 6E-138 1139.7 74.6 854 1-875 1-902 (933)
2 KOG0271 Notchless-like WD40 re 100.0 3.3E-41 7.1E-46 352.5 27.1 288 15-306 113-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-39 9E-44 341.5 23.6 282 15-306 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 1.2E-35 2.6E-40 302.3 32.6 290 6-306 45-343 (343)
5 KOG0279 G protein beta subunit 100.0 4.2E-34 9E-39 289.6 31.5 294 4-308 3-313 (315)
6 KOG0271 Notchless-like WD40 re 100.0 3.3E-34 7.2E-39 300.1 24.4 252 52-312 106-443 (480)
7 KOG0284 Polyadenylation factor 100.0 8.8E-35 1.9E-39 307.2 19.2 283 18-311 97-383 (464)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-34 4.1E-39 306.2 20.6 241 15-265 215-458 (459)
9 KOG0273 Beta-transducin family 100.0 8.5E-33 1.8E-37 296.8 32.0 280 17-308 235-523 (524)
10 cd00200 WD40 WD40 domain, foun 100.0 2.6E-31 5.6E-36 285.5 37.6 282 15-306 7-289 (289)
11 KOG0295 WD40 repeat-containing 100.0 4.5E-32 9.7E-37 283.4 26.7 287 10-307 102-405 (406)
12 KOG0315 G-protein beta subunit 100.0 3.6E-31 7.8E-36 264.0 28.4 272 31-313 12-293 (311)
13 KOG0266 WD40 repeat-containing 100.0 9.5E-31 2.1E-35 305.2 34.4 284 17-307 159-453 (456)
14 KOG0263 Transcription initiati 100.0 1E-31 2.2E-36 305.7 24.2 273 18-311 379-652 (707)
15 KOG0296 Angio-associated migra 100.0 1.6E-30 3.5E-35 272.0 30.5 289 15-308 62-398 (399)
16 KOG0285 Pleiotropic regulator 100.0 6.4E-31 1.4E-35 273.4 26.9 283 15-309 149-440 (460)
17 KOG0318 WD40 repeat stress pro 100.0 2.8E-30 6E-35 280.6 32.7 304 4-312 178-564 (603)
18 KOG0645 WD40 repeat protein [G 100.0 7.1E-30 1.5E-34 257.9 32.6 283 10-308 8-311 (312)
19 KOG0291 WD40-repeat-containing 100.0 4E-30 8.7E-35 289.0 33.6 284 18-310 266-552 (893)
20 KOG0265 U5 snRNP-specific prot 100.0 1.9E-30 4.2E-35 265.4 27.7 282 15-305 45-335 (338)
21 KOG0273 Beta-transducin family 100.0 1.9E-30 4.2E-35 278.7 28.8 291 15-315 176-489 (524)
22 KOG0282 mRNA splicing factor [ 100.0 1E-31 2.3E-36 289.8 18.3 283 15-306 212-503 (503)
23 KOG0315 G-protein beta subunit 100.0 5.7E-30 1.2E-34 255.4 27.7 265 17-286 40-308 (311)
24 PLN00181 protein SPA1-RELATED; 100.0 4.8E-29 1E-33 311.3 41.1 283 15-308 481-793 (793)
25 KOG1274 WD40 repeat protein [G 100.0 2.8E-27 6E-32 272.2 51.2 243 58-309 10-263 (933)
26 KOG0286 G-protein beta subunit 100.0 1.7E-29 3.6E-34 257.5 29.4 250 54-312 48-307 (343)
27 KOG0279 G protein beta subunit 100.0 1.9E-29 4.2E-34 255.8 28.1 252 53-312 7-266 (315)
28 KOG0291 WD40-repeat-containing 100.0 3.8E-29 8.2E-34 281.2 32.8 286 18-313 308-617 (893)
29 KOG0293 WD40 repeat-containing 100.0 6.4E-30 1.4E-34 270.2 22.8 284 15-309 222-514 (519)
30 KOG0276 Vesicle coat complex C 100.0 3.7E-29 7.9E-34 275.9 26.3 290 1-304 1-295 (794)
31 KOG0284 Polyadenylation factor 100.0 2.9E-30 6.2E-35 273.1 16.1 243 15-266 136-379 (464)
32 KOG0316 Conserved WD40 repeat- 100.0 1.2E-28 2.7E-33 244.0 25.8 276 15-305 15-296 (307)
33 KOG0263 Transcription initiati 100.0 2.8E-29 6E-34 285.9 22.9 223 38-269 429-651 (707)
34 KOG0275 Conserved WD40 repeat- 100.0 1.9E-29 4E-34 258.8 18.3 285 15-306 211-507 (508)
35 KOG0310 Conserved WD40 repeat- 100.0 2.8E-28 6.2E-33 263.9 27.9 290 6-309 17-310 (487)
36 KOG0292 Vesicle coat complex C 100.0 2.2E-28 4.9E-33 278.0 27.2 289 16-308 8-321 (1202)
37 KOG0973 Histone transcription 100.0 3.7E-28 8E-33 285.2 29.8 290 18-309 14-356 (942)
38 KOG0281 Beta-TrCP (transducin 100.0 4E-29 8.8E-34 258.7 18.4 273 15-311 195-480 (499)
39 KOG0278 Serine/threonine kinas 100.0 8.4E-29 1.8E-33 246.9 19.2 283 15-311 12-300 (334)
40 KOG0319 WD40-repeat-containing 100.0 4.4E-28 9.4E-33 272.9 25.8 294 6-311 313-622 (775)
41 KOG1407 WD40 repeat protein [F 100.0 3.1E-27 6.7E-32 237.6 27.4 274 15-299 18-293 (313)
42 KOG0318 WD40 repeat stress pro 100.0 1.6E-26 3.4E-31 251.5 33.8 293 11-313 54-355 (603)
43 cd00200 WD40 WD40 domain, foun 100.0 1.8E-26 3.9E-31 247.9 34.2 249 55-311 3-252 (289)
44 KOG0285 Pleiotropic regulator 100.0 1.4E-27 2.9E-32 248.7 22.1 249 54-312 144-393 (460)
45 KOG0295 WD40 repeat-containing 100.0 2E-27 4.4E-32 248.7 22.8 243 15-266 148-405 (406)
46 KOG0313 Microtubule binding pr 100.0 6.6E-27 1.4E-31 246.0 26.3 284 8-307 96-417 (423)
47 KOG0643 Translation initiation 100.0 1.4E-26 3E-31 233.4 27.2 282 15-307 8-316 (327)
48 KOG0306 WD40-repeat-containing 100.0 7.8E-27 1.7E-31 262.5 26.9 281 15-308 371-664 (888)
49 KOG0266 WD40 repeat-containing 100.0 8.6E-27 1.9E-31 272.0 28.3 247 15-267 201-454 (456)
50 KOG0645 WD40 repeat protein [G 99.9 1.6E-25 3.5E-30 226.5 29.4 245 54-308 7-261 (312)
51 KOG0276 Vesicle coat complex C 99.9 2.1E-26 4.5E-31 254.2 24.3 249 55-311 7-260 (794)
52 KOG0640 mRNA cleavage stimulat 99.9 1.8E-26 3.9E-31 236.3 21.9 287 15-307 110-425 (430)
53 PTZ00421 coronin; Provisional 99.9 3.5E-25 7.6E-30 258.0 35.1 267 16-289 19-314 (493)
54 KOG0277 Peroxisomal targeting 99.9 2.7E-26 5.9E-31 229.9 21.8 279 21-307 12-308 (311)
55 KOG0265 U5 snRNP-specific prot 99.9 3E-26 6.5E-31 234.8 22.4 249 54-311 40-299 (338)
56 KOG0316 Conserved WD40 repeat- 99.9 5.3E-26 1.1E-30 225.4 22.7 248 53-312 9-261 (307)
57 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-24 2.6E-29 225.6 33.6 292 5-308 3-303 (311)
58 KOG0288 WD40 repeat protein Ti 99.9 9.2E-27 2E-31 247.1 18.0 279 16-306 174-459 (459)
59 KOG0641 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 213.3 31.6 289 16-307 31-348 (350)
60 KOG0283 WD40 repeat-containing 99.9 6.4E-26 1.4E-30 260.7 25.7 251 15-270 265-579 (712)
61 KOG0305 Anaphase promoting com 99.9 1.9E-25 4.1E-30 251.4 27.8 273 23-310 183-463 (484)
62 KOG0319 WD40-repeat-containing 99.9 8.5E-26 1.8E-30 254.6 23.3 245 15-268 363-620 (775)
63 KOG0296 Angio-associated migra 99.9 4.6E-25 1E-29 231.3 25.9 264 53-324 56-375 (399)
64 KOG0282 mRNA splicing factor [ 99.9 3E-26 6.4E-31 247.8 16.7 253 52-312 205-466 (503)
65 KOG0268 Sof1-like rRNA process 99.9 3.5E-26 7.6E-31 239.0 16.7 284 11-311 61-348 (433)
66 PLN00181 protein SPA1-RELATED; 99.9 2.4E-24 5.2E-29 269.2 35.0 261 39-310 457-740 (793)
67 KOG0281 Beta-TrCP (transducin 99.9 2.9E-26 6.3E-31 237.6 13.8 236 60-312 196-432 (499)
68 KOG0299 U3 snoRNP-associated p 99.9 9.2E-25 2E-29 235.1 25.8 288 10-308 136-456 (479)
69 KOG0292 Vesicle coat complex C 99.9 4E-25 8.6E-30 251.8 23.3 249 57-312 5-284 (1202)
70 KOG0289 mRNA splicing factor [ 99.9 3E-24 6.4E-29 229.1 28.2 284 15-307 217-505 (506)
71 KOG0772 Uncharacterized conser 99.9 9E-25 2E-29 236.9 24.3 289 15-306 165-485 (641)
72 KOG0293 WD40 repeat-containing 99.9 3E-25 6.6E-30 235.0 20.1 252 7-268 260-514 (519)
73 KOG0274 Cdc4 and related F-box 99.9 2.7E-24 5.9E-29 250.9 29.3 277 17-313 208-487 (537)
74 KOG0647 mRNA export protein (c 99.9 2.9E-24 6.3E-29 220.4 25.8 272 16-297 26-312 (347)
75 KOG0639 Transducin-like enhanc 99.9 4.7E-25 1E-29 237.9 20.8 288 9-308 411-704 (705)
76 KOG0283 WD40 repeat-containing 99.9 1.4E-24 3.1E-29 249.7 25.7 243 59-311 265-579 (712)
77 PTZ00420 coronin; Provisional 99.9 1.5E-23 3.2E-28 245.5 34.2 251 36-290 50-318 (568)
78 KOG0277 Peroxisomal targeting 99.9 9.8E-25 2.1E-29 218.8 19.0 244 17-266 60-308 (311)
79 KOG0305 Anaphase promoting com 99.9 4.8E-24 1E-28 240.2 25.7 240 17-269 217-463 (484)
80 KOG0306 WD40-repeat-containing 99.9 1.2E-23 2.7E-28 236.9 28.5 286 18-309 321-623 (888)
81 PTZ00421 coronin; Provisional 99.9 2.2E-23 4.8E-28 242.9 31.3 228 15-248 73-314 (493)
82 KOG0294 WD40 repeat-containing 99.9 1.7E-23 3.8E-28 215.8 25.9 244 9-269 36-283 (362)
83 KOG1446 Histone H3 (Lys4) meth 99.9 8.3E-23 1.8E-27 211.9 30.7 250 55-313 8-267 (311)
84 KOG0278 Serine/threonine kinas 99.9 2.1E-24 4.5E-29 215.7 16.5 245 15-272 57-302 (334)
85 KOG2055 WD40 repeat protein [G 99.9 3E-23 6.6E-28 223.2 25.3 283 17-308 213-512 (514)
86 KOG1273 WD40 repeat protein [G 99.9 4.5E-23 9.7E-28 212.2 24.6 281 20-311 26-325 (405)
87 KOG1036 Mitotic spindle checkp 99.9 1.2E-22 2.6E-27 209.6 27.7 267 18-298 14-294 (323)
88 KOG0310 Conserved WD40 repeat- 99.9 4.8E-23 1E-27 223.6 25.6 237 17-265 68-307 (487)
89 KOG0294 WD40 repeat-containing 99.9 1.1E-22 2.5E-27 209.8 27.0 242 56-311 38-284 (362)
90 KOG1407 WD40 repeat protein [F 99.9 4.1E-23 8.8E-28 208.1 23.0 249 55-313 14-266 (313)
91 KOG0643 Translation initiation 99.9 6.5E-23 1.4E-27 207.1 24.2 237 54-298 3-251 (327)
92 KOG0289 mRNA splicing factor [ 99.9 5.5E-23 1.2E-27 219.5 23.5 241 62-308 220-462 (506)
93 PTZ00420 coronin; Provisional 99.9 4.3E-22 9.4E-27 233.2 33.3 223 79-310 50-295 (568)
94 KOG1539 WD repeat protein [Gen 99.9 1.6E-22 3.6E-27 230.6 28.7 282 18-308 245-648 (910)
95 KOG0300 WD40 repeat-containing 99.9 4.5E-23 9.8E-28 211.7 21.8 286 15-311 146-479 (481)
96 KOG0275 Conserved WD40 repeat- 99.9 1.1E-23 2.5E-28 216.4 17.2 246 60-312 212-471 (508)
97 KOG1408 WD40 repeat protein [F 99.9 7.7E-23 1.7E-27 228.2 24.7 289 20-309 327-714 (1080)
98 KOG0308 Conserved WD40 repeat- 99.9 2E-23 4.2E-28 232.4 19.7 291 9-308 13-327 (735)
99 KOG0973 Histone transcription 99.9 5.8E-23 1.3E-27 241.8 24.6 252 10-270 63-358 (942)
100 KOG0288 WD40 repeat protein Ti 99.9 3.6E-23 7.8E-28 219.9 20.2 241 15-264 217-458 (459)
101 KOG0772 Uncharacterized conser 99.9 8.6E-23 1.9E-27 221.7 21.0 255 55-311 161-448 (641)
102 KOG0301 Phospholipase A2-activ 99.9 2.9E-22 6.2E-27 224.8 25.6 273 15-308 12-288 (745)
103 KOG0264 Nucleosome remodeling 99.9 8.6E-23 1.9E-27 220.4 20.6 254 8-268 115-405 (422)
104 KOG0274 Cdc4 and related F-box 99.9 3E-22 6.5E-27 233.8 26.8 243 15-275 247-490 (537)
105 KOG0313 Microtubule binding pr 99.9 3.3E-22 7.1E-27 210.8 23.3 244 15-267 142-418 (423)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.1E-21 1.5E-25 209.1 35.3 270 30-312 2-283 (300)
107 KOG2096 WD40 repeat protein [G 99.9 6.3E-22 1.4E-26 204.0 23.7 247 15-265 84-400 (420)
108 KOG1332 Vesicle coat complex C 99.9 2.8E-22 6.2E-27 200.2 18.5 250 56-310 6-288 (299)
109 KOG2048 WD40 repeat protein [G 99.9 4.7E-21 1E-25 215.0 30.3 285 18-308 26-319 (691)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 205.7 34.7 265 18-288 31-300 (300)
111 KOG0308 Conserved WD40 repeat- 99.9 1.4E-22 3E-27 225.7 17.4 245 66-311 29-288 (735)
112 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 211.9 23.7 256 30-295 51-336 (476)
113 KOG4283 Transcription-coupled 99.9 7.5E-21 1.6E-25 194.2 26.8 290 15-307 41-364 (397)
114 KOG0264 Nucleosome remodeling 99.9 1.1E-21 2.5E-26 211.8 21.2 244 59-308 122-404 (422)
115 KOG0269 WD40 repeat-containing 99.9 8.6E-22 1.9E-26 223.3 18.1 278 18-305 40-337 (839)
116 KOG1332 Vesicle coat complex C 99.9 1.7E-21 3.7E-26 194.7 17.8 247 15-267 9-286 (299)
117 KOG0267 Microtubule severing p 99.9 1.4E-22 3E-27 227.9 10.3 248 38-300 12-260 (825)
118 KOG0640 mRNA cleavage stimulat 99.9 3.2E-21 7E-26 197.9 19.0 247 16-266 171-425 (430)
119 KOG0299 U3 snoRNP-associated p 99.9 1.1E-20 2.5E-25 203.7 24.1 244 15-264 200-453 (479)
120 KOG0647 mRNA export protein (c 99.9 2.5E-20 5.3E-25 191.6 24.7 262 59-331 25-307 (347)
121 KOG1063 RNA polymerase II elon 99.9 2E-20 4.4E-25 209.9 25.5 293 15-308 189-648 (764)
122 KOG4328 WD40 protein [Function 99.9 1.2E-20 2.6E-25 203.2 22.6 290 15-307 184-494 (498)
123 KOG0641 WD40 repeat protein [G 99.9 9.3E-20 2E-24 179.7 26.6 244 15-267 87-349 (350)
124 KOG2445 Nuclear pore complex c 99.9 5.8E-20 1.3E-24 189.2 25.7 252 56-309 8-319 (361)
125 KOG0269 WD40 repeat-containing 99.9 2.2E-21 4.7E-26 220.1 14.8 238 20-266 90-339 (839)
126 KOG0300 WD40 repeat-containing 99.9 2.9E-20 6.2E-25 191.2 21.4 251 52-311 139-431 (481)
127 KOG2106 Uncharacterized conser 99.9 4.4E-19 9.6E-24 192.6 31.4 273 18-306 201-519 (626)
128 KOG0646 WD40 repeat protein [G 99.9 2.3E-20 5E-25 201.8 21.4 270 39-312 17-311 (476)
129 KOG1539 WD repeat protein [Gen 99.9 1.3E-19 2.8E-24 207.1 27.0 300 10-312 196-610 (910)
130 KOG0267 Microtubule severing p 99.8 1.7E-21 3.6E-26 219.3 10.8 235 15-259 26-260 (825)
131 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 202.4 23.8 288 23-310 55-393 (720)
132 KOG1009 Chromatin assembly com 99.8 1.6E-19 3.6E-24 192.2 23.7 288 18-308 14-372 (434)
133 KOG0639 Transducin-like enhanc 99.8 2E-20 4.4E-25 202.3 16.7 238 17-266 465-703 (705)
134 KOG0650 WD40 repeat nucleolar 99.8 1.9E-19 4.1E-24 199.0 23.0 278 15-305 398-732 (733)
135 KOG1408 WD40 repeat protein [F 99.8 9.6E-20 2.1E-24 203.8 20.7 252 14-272 456-718 (1080)
136 KOG1036 Mitotic spindle checkp 99.8 4.1E-19 8.8E-24 183.7 23.5 242 60-314 12-268 (323)
137 KOG2048 WD40 repeat protein [G 99.8 9.6E-17 2.1E-21 180.7 43.5 243 61-310 25-277 (691)
138 KOG0268 Sof1-like rRNA process 99.8 2.3E-20 5.1E-25 195.6 13.8 242 56-312 61-306 (433)
139 KOG0301 Phospholipase A2-activ 99.8 3.4E-19 7.5E-24 200.3 23.3 234 15-269 55-290 (745)
140 KOG2106 Uncharacterized conser 99.8 3.5E-18 7.5E-23 185.7 30.2 287 16-312 153-481 (626)
141 KOG2445 Nuclear pore complex c 99.8 1.2E-18 2.6E-23 179.6 25.1 246 15-267 11-318 (361)
142 KOG1273 WD40 repeat protein [G 99.8 7.2E-19 1.6E-23 181.4 22.6 246 64-313 26-285 (405)
143 KOG2096 WD40 repeat protein [G 99.8 1E-18 2.2E-23 180.5 22.8 250 54-307 79-401 (420)
144 KOG4378 Nuclear protein COP1 [ 99.8 5.7E-19 1.2E-23 191.1 21.5 264 19-290 36-305 (673)
145 KOG0270 WD40 repeat-containing 99.8 9.4E-19 2E-23 188.3 22.6 277 23-312 131-453 (463)
146 KOG4378 Nuclear protein COP1 [ 99.8 5.3E-19 1.1E-23 191.3 18.7 264 39-310 11-282 (673)
147 KOG1538 Uncharacterized conser 99.8 1.8E-18 3.8E-23 192.3 22.7 275 19-309 14-294 (1081)
148 KOG1063 RNA polymerase II elon 99.8 6.7E-18 1.5E-22 189.9 25.8 284 17-308 316-699 (764)
149 KOG0302 Ribosome Assembly prot 99.8 2.3E-18 5E-23 181.7 20.2 241 59-306 149-436 (440)
150 KOG0302 Ribosome Assembly prot 99.8 3.7E-18 8E-23 180.1 20.8 242 15-265 149-436 (440)
151 KOG2919 Guanine nucleotide-bin 99.8 7.3E-18 1.6E-22 174.7 22.5 269 20-298 52-360 (406)
152 KOG2919 Guanine nucleotide-bin 99.8 2.3E-17 4.9E-22 171.1 24.6 246 64-311 52-330 (406)
153 COG2319 FOG: WD40 repeat [Gene 99.8 4E-16 8.6E-21 176.2 37.5 287 15-311 63-362 (466)
154 KOG0307 Vesicle coat complex C 99.8 6.4E-19 1.4E-23 208.6 14.2 284 22-311 11-330 (1049)
155 KOG1445 Tumor-specific antigen 99.8 3.2E-18 6.9E-23 189.4 18.2 131 15-145 77-213 (1012)
156 KOG1034 Transcriptional repres 99.8 4.3E-17 9.3E-22 169.5 25.2 289 15-308 36-383 (385)
157 KOG0321 WD40 repeat-containing 99.8 8.5E-18 1.8E-22 187.5 20.2 254 5-269 92-393 (720)
158 KOG0307 Vesicle coat complex C 99.8 3.1E-18 6.7E-23 202.9 16.7 246 17-270 64-330 (1049)
159 KOG2055 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 180.1 19.3 239 61-307 213-466 (514)
160 KOG4283 Transcription-coupled 99.8 3.6E-17 7.8E-22 167.5 20.8 253 8-266 92-364 (397)
161 KOG0650 WD40 repeat nucleolar 99.8 4.9E-17 1.1E-21 180.0 21.2 245 53-308 392-680 (733)
162 KOG4227 WD40 repeat protein [G 99.7 1.4E-16 3E-21 168.1 22.7 291 15-308 54-387 (609)
163 KOG1963 WD40 repeat protein [G 99.7 3.6E-16 7.8E-21 181.2 28.0 298 9-310 198-540 (792)
164 COG2319 FOG: WD40 repeat [Gene 99.7 6.2E-15 1.3E-19 166.5 37.9 285 15-309 153-443 (466)
165 PRK11028 6-phosphogluconolacto 99.7 1.6E-15 3.5E-20 170.5 32.8 275 30-308 2-304 (330)
166 KOG0270 WD40 repeat-containing 99.7 4.4E-17 9.6E-22 175.6 18.8 245 21-273 177-455 (463)
167 KOG1334 WD40 repeat protein [G 99.7 4.9E-17 1.1E-21 176.6 16.4 305 4-312 130-470 (559)
168 KOG4328 WD40 protein [Function 99.7 1E-16 2.3E-21 173.1 18.7 250 55-311 180-453 (498)
169 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.3E-20 155.6 24.1 273 19-298 46-356 (364)
170 KOG0642 Cell-cycle nuclear pro 99.7 4.3E-17 9.4E-22 180.2 13.6 257 15-274 292-568 (577)
171 KOG1524 WD40 repeat-containing 99.7 3.6E-16 7.9E-21 170.9 20.5 265 15-307 12-285 (737)
172 KOG1587 Cytoplasmic dynein int 99.7 2.3E-15 5E-20 175.0 28.1 291 16-309 179-517 (555)
173 KOG0303 Actin-binding protein 99.7 1.1E-15 2.5E-20 162.3 22.7 265 19-290 29-321 (472)
174 KOG1034 Transcriptional repres 99.7 1.1E-16 2.4E-21 166.5 14.9 249 15-267 87-383 (385)
175 KOG0649 WD40 repeat protein [G 99.7 6.2E-15 1.4E-19 147.7 26.7 279 18-307 11-315 (325)
176 KOG1188 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 162.5 19.3 270 31-307 42-345 (376)
177 KOG4497 Uncharacterized conser 99.7 3.4E-15 7.3E-20 155.2 24.8 296 23-331 14-416 (447)
178 KOG0642 Cell-cycle nuclear pro 99.7 2.4E-16 5.1E-21 174.5 15.8 251 56-312 289-565 (577)
179 KOG1009 Chromatin assembly com 99.7 8.6E-16 1.9E-20 164.1 18.4 247 15-270 63-375 (434)
180 KOG0644 Uncharacterized conser 99.7 5.2E-17 1.1E-21 185.2 9.7 276 15-310 188-470 (1113)
181 PRK11028 6-phosphogluconolacto 99.7 2.2E-14 4.7E-19 161.4 30.1 263 18-286 35-327 (330)
182 KOG0771 Prolactin regulatory e 99.7 5.9E-15 1.3E-19 159.0 22.6 203 107-316 148-362 (398)
183 KOG0303 Actin-binding protein 99.7 3.3E-15 7.1E-20 158.8 19.4 233 10-248 74-320 (472)
184 KOG1007 WD repeat protein TSSC 99.7 8.8E-15 1.9E-19 149.9 21.2 261 38-307 38-360 (370)
185 KOG0322 G-protein beta subunit 99.7 1.2E-15 2.5E-20 154.7 14.2 247 11-266 9-322 (323)
186 PRK01742 tolB translocation pr 99.7 1.4E-14 3.1E-19 168.6 25.1 233 39-289 183-426 (429)
187 KOG1538 Uncharacterized conser 99.6 4.5E-15 9.9E-20 165.5 19.0 231 63-306 14-250 (1081)
188 KOG2110 Uncharacterized conser 99.6 1E-13 2.2E-18 147.0 27.9 236 62-309 6-249 (391)
189 KOG1523 Actin-related protein 99.6 2.6E-14 5.6E-19 148.8 22.0 230 17-248 10-260 (361)
190 KOG2321 WD40 repeat protein [G 99.6 4.9E-14 1.1E-18 156.0 25.1 285 15-307 49-342 (703)
191 KOG1445 Tumor-specific antigen 99.6 6.2E-15 1.3E-19 163.7 18.0 258 27-290 589-871 (1012)
192 KOG1517 Guanine nucleotide bin 99.6 3E-14 6.4E-19 166.7 24.1 282 20-309 1067-1382(1387)
193 KOG2110 Uncharacterized conser 99.6 1E-12 2.3E-17 139.4 33.5 277 17-309 5-331 (391)
194 KOG0771 Prolactin regulatory e 99.6 4.2E-15 9.1E-20 160.2 15.8 201 65-268 148-355 (398)
195 KOG1524 WD40 repeat-containing 99.6 9.3E-15 2E-19 160.1 18.5 207 31-264 77-283 (737)
196 KOG1007 WD repeat protein TSSC 99.6 1.4E-14 3E-19 148.5 18.3 225 81-309 38-290 (370)
197 KOG2139 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 144.2 26.1 279 18-308 99-431 (445)
198 KOG0322 G-protein beta subunit 99.6 1.3E-14 2.9E-19 147.1 16.2 251 54-307 7-322 (323)
199 KOG1587 Cytoplasmic dynein int 99.6 5.1E-14 1.1E-18 163.8 23.6 245 17-269 242-518 (555)
200 KOG1240 Protein kinase contain 99.6 1.3E-13 2.8E-18 163.9 25.2 290 10-306 1041-1431(1431)
201 KOG0644 Uncharacterized conser 99.6 2.1E-15 4.6E-20 172.3 9.4 246 55-314 184-432 (1113)
202 PRK01742 tolB translocation pr 99.6 1E-13 2.2E-18 161.5 21.2 217 15-248 201-426 (429)
203 KOG1272 WD40-repeat-containing 99.6 6.5E-15 1.4E-19 159.4 10.2 235 62-310 130-364 (545)
204 KOG1188 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 146.4 17.6 192 116-311 41-245 (376)
205 PRK03629 tolB translocation pr 99.6 1.2E-12 2.5E-17 152.3 28.8 235 40-289 179-428 (429)
206 KOG1523 Actin-related protein 99.6 2.7E-13 5.9E-18 141.3 20.4 234 61-299 10-269 (361)
207 KOG0290 Conserved WD40 repeat- 99.6 2.5E-13 5.5E-18 139.5 19.5 236 15-263 94-361 (364)
208 KOG1272 WD40-repeat-containing 99.5 2.2E-14 4.7E-19 155.4 12.1 268 20-304 132-405 (545)
209 KOG4497 Uncharacterized conser 99.5 1.2E-12 2.5E-17 136.5 24.3 279 18-301 49-425 (447)
210 KOG1963 WD40 repeat protein [G 99.5 2.4E-12 5.2E-17 149.9 29.6 289 21-312 164-491 (792)
211 PRK04922 tolB translocation pr 99.5 9.4E-13 2E-17 153.6 26.5 234 40-288 184-432 (433)
212 KOG4227 WD40 repeat protein [G 99.5 2.2E-13 4.8E-18 144.1 18.7 250 54-308 49-322 (609)
213 KOG1832 HIV-1 Vpr-binding prot 99.5 1.1E-14 2.3E-19 166.7 8.8 266 5-298 1090-1379(1516)
214 PRK05137 tolB translocation pr 99.5 2.6E-12 5.6E-17 150.1 28.9 234 40-289 182-433 (435)
215 KOG0649 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 131.3 22.2 231 62-307 11-273 (325)
216 PRK02889 tolB translocation pr 99.5 2.2E-12 4.8E-17 150.1 27.5 234 40-289 176-425 (427)
217 KOG2394 WD40 protein DMR-N9 [G 99.5 7.9E-13 1.7E-17 145.7 21.4 242 20-287 126-383 (636)
218 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-11 2.5E-16 140.2 31.8 274 29-312 5-351 (369)
219 KOG3881 Uncharacterized conser 99.5 1.4E-12 2.9E-17 139.4 22.1 263 17-289 55-342 (412)
220 KOG1310 WD40 repeat protein [G 99.5 1.2E-13 2.7E-18 151.8 13.9 222 53-274 42-310 (758)
221 KOG1310 WD40 repeat protein [G 99.5 1.3E-13 2.7E-18 151.7 13.9 225 6-232 40-311 (758)
222 KOG1240 Protein kinase contain 99.5 2.7E-12 5.9E-17 152.9 24.3 256 52-312 1039-1338(1431)
223 KOG2111 Uncharacterized conser 99.5 8.6E-12 1.9E-16 130.2 25.1 236 63-309 7-257 (346)
224 KOG1517 Guanine nucleotide bin 99.5 3.1E-12 6.6E-17 150.1 22.9 240 61-308 1064-1333(1387)
225 PRK05137 tolB translocation pr 99.5 2.5E-11 5.4E-16 141.8 28.9 213 83-308 182-412 (435)
226 PRK03629 tolB translocation pr 99.5 7.6E-12 1.6E-16 145.6 24.3 217 16-247 197-427 (429)
227 KOG2111 Uncharacterized conser 99.4 1.5E-10 3.3E-15 121.0 29.7 238 19-268 7-257 (346)
228 KOG2139 WD40 repeat protein [G 99.4 3.3E-11 7.2E-16 127.4 25.0 246 17-266 140-430 (445)
229 PF08662 eIF2A: Eukaryotic tra 99.4 1E-11 2.2E-16 128.3 21.0 155 106-274 8-185 (194)
230 PRK02889 tolB translocation pr 99.4 1.3E-11 2.8E-16 143.7 23.1 219 15-248 193-425 (427)
231 PRK04922 tolB translocation pr 99.4 2.9E-11 6.2E-16 141.2 25.7 212 83-307 184-410 (433)
232 KOG2394 WD40 protein DMR-N9 [G 99.4 2.3E-12 4.9E-17 142.1 15.3 139 17-155 219-384 (636)
233 PF02239 Cytochrom_D1: Cytochr 99.4 1.5E-10 3.3E-15 131.2 28.7 253 21-276 40-356 (369)
234 KOG3881 Uncharacterized conser 99.4 3.4E-11 7.3E-16 128.9 21.6 248 61-312 55-324 (412)
235 TIGR02800 propeller_TolB tol-p 99.4 1E-10 2.2E-15 135.9 27.7 233 39-286 169-416 (417)
236 PRK01029 tolB translocation pr 99.4 1.7E-10 3.8E-15 133.8 29.0 239 40-290 165-426 (428)
237 PF10282 Lactonase: Lactonase, 99.4 2.2E-09 4.8E-14 121.4 36.3 266 40-308 13-322 (345)
238 PRK00178 tolB translocation pr 99.4 1.9E-10 4.2E-15 134.3 28.5 234 41-289 180-428 (430)
239 PF08662 eIF2A: Eukaryotic tra 99.4 5.3E-11 1.1E-15 122.9 20.9 157 21-183 9-186 (194)
240 PRK04792 tolB translocation pr 99.3 2.2E-10 4.7E-15 134.0 27.4 233 41-288 199-446 (448)
241 KOG2321 WD40 repeat protein [G 99.3 1.1E-10 2.4E-15 129.9 23.2 242 59-313 49-307 (703)
242 PF10282 Lactonase: Lactonase, 99.3 4.2E-09 9.2E-14 119.1 36.6 267 18-286 37-345 (345)
243 KOG2315 Predicted translation 99.3 2.7E-10 5.8E-15 127.2 24.6 279 18-308 35-390 (566)
244 KOG1354 Serine/threonine prote 99.3 1.5E-10 3.3E-15 121.8 20.2 248 18-269 26-361 (433)
245 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.6E-09 7.8E-14 117.6 32.2 278 28-314 11-336 (352)
246 TIGR02800 propeller_TolB tol-p 99.3 6.5E-10 1.4E-14 129.2 27.6 204 84-300 171-386 (417)
247 KOG2041 WD40 repeat protein [G 99.3 2.9E-10 6.3E-15 128.6 22.1 283 16-308 13-337 (1189)
248 KOG1334 WD40 repeat protein [G 99.3 6.4E-11 1.4E-15 129.6 15.0 256 55-311 136-427 (559)
249 COG2706 3-carboxymuconate cycl 99.3 1.9E-08 4.2E-13 107.8 32.8 266 39-308 15-321 (346)
250 PRK01029 tolB translocation pr 99.2 1.3E-09 2.7E-14 126.7 25.2 220 18-249 185-426 (428)
251 KOG2314 Translation initiation 99.2 1.8E-09 3.8E-14 120.0 24.3 283 11-307 244-572 (698)
252 PRK00178 tolB translocation pr 99.2 1E-09 2.2E-14 128.2 24.1 218 16-248 197-428 (430)
253 PRK04792 tolB translocation pr 99.2 8E-10 1.7E-14 129.2 23.0 215 18-247 218-446 (448)
254 TIGR02658 TTQ_MADH_Hv methylam 99.2 2E-08 4.3E-13 111.8 32.1 245 25-275 53-338 (352)
255 KOG0280 Uncharacterized conser 99.2 3E-09 6.5E-14 110.3 22.6 263 39-310 45-335 (339)
256 PF12341 DUF3639: Protein of u 99.2 2.6E-11 5.7E-16 80.2 4.1 27 525-551 1-27 (27)
257 KOG1409 Uncharacterized conser 99.2 2.6E-09 5.6E-14 112.9 20.9 243 15-268 22-271 (404)
258 PF04762 IKI3: IKI3 family; I 99.2 2.5E-08 5.5E-13 124.8 32.9 286 17-311 75-459 (928)
259 COG5354 Uncharacterized protei 99.1 6.6E-09 1.4E-13 114.9 23.7 274 18-309 33-349 (561)
260 KOG4547 WD40 repeat-containing 99.1 4.8E-09 1E-13 118.2 22.6 188 71-268 3-221 (541)
261 KOG1354 Serine/threonine prote 99.1 1.3E-09 2.8E-14 114.9 16.6 249 61-311 25-362 (433)
262 KOG2314 Translation initiation 99.1 1.5E-08 3.2E-13 112.8 25.4 275 21-309 214-526 (698)
263 COG5354 Uncharacterized protei 99.1 2.2E-08 4.7E-13 110.8 25.9 278 18-310 72-397 (561)
264 KOG0974 WD-repeat protein WDR6 99.1 3.6E-09 7.9E-14 125.7 20.6 275 17-309 7-289 (967)
265 KOG2315 Predicted translation 99.1 9.3E-09 2E-13 115.0 22.4 250 21-289 129-411 (566)
266 KOG1832 HIV-1 Vpr-binding prot 99.1 1.5E-10 3.2E-15 133.6 8.3 220 53-292 1093-1315(1516)
267 COG4946 Uncharacterized protei 99.1 7.4E-08 1.6E-12 105.4 28.2 172 28-213 331-507 (668)
268 KOG0974 WD-repeat protein WDR6 99.1 4.6E-09 9.9E-14 124.9 19.7 198 62-268 88-289 (967)
269 PRK04043 tolB translocation pr 99.1 5.5E-08 1.2E-12 112.4 28.5 217 40-274 169-407 (419)
270 PF04762 IKI3: IKI3 family; I 99.1 2.1E-07 4.6E-12 116.6 34.8 282 17-307 120-518 (928)
271 KOG1409 Uncharacterized conser 99.0 7.3E-09 1.6E-13 109.5 17.0 246 53-309 16-271 (404)
272 TIGR03300 assembly_YfgL outer 99.0 1.3E-07 2.7E-12 108.6 29.1 270 29-313 65-343 (377)
273 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.4E-14 134.9 11.6 201 56-276 2203-2407(2439)
274 PLN02919 haloacid dehalogenase 99.0 2.2E-07 4.8E-12 118.6 32.8 247 21-271 571-892 (1057)
275 COG2706 3-carboxymuconate cycl 99.0 8.5E-07 1.8E-11 95.4 31.7 271 16-287 38-345 (346)
276 KOG4547 WD40 repeat-containing 99.0 5.4E-08 1.2E-12 109.9 23.2 189 26-225 2-221 (541)
277 PLN02919 haloacid dehalogenase 99.0 4.3E-07 9.3E-12 116.0 34.1 244 65-311 571-891 (1057)
278 KOG1064 RAVE (regulator of V-A 99.0 2.3E-09 5E-14 132.2 12.5 198 18-236 2209-2410(2439)
279 TIGR03300 assembly_YfgL outer 99.0 1.9E-07 4.1E-12 107.2 27.2 257 28-305 104-376 (377)
280 COG4946 Uncharacterized protei 99.0 3.1E-07 6.8E-12 100.6 26.2 216 69-297 274-507 (668)
281 KOG4532 WD40-like repeat conta 98.9 1.8E-07 3.8E-12 96.1 21.3 246 22-271 72-335 (344)
282 PRK04043 tolB translocation pr 98.9 6.6E-07 1.4E-11 103.5 29.1 209 83-307 169-397 (419)
283 KOG1912 WD40 repeat protein [G 98.9 5.3E-08 1.1E-12 112.0 18.5 288 17-309 15-365 (1062)
284 PF08450 SGL: SMP-30/Gluconola 98.9 2.7E-06 6E-11 91.4 30.9 216 66-297 4-244 (246)
285 KOG4190 Uncharacterized conser 98.9 6.8E-09 1.5E-13 114.6 10.4 244 56-307 730-987 (1034)
286 KOG0280 Uncharacterized conser 98.8 2.6E-07 5.6E-12 96.2 19.5 241 18-268 70-334 (339)
287 KOG1912 WD40 repeat protein [G 98.8 1E-06 2.3E-11 101.6 25.9 303 3-311 45-554 (1062)
288 PF08450 SGL: SMP-30/Gluconola 98.8 4.9E-06 1.1E-10 89.5 29.9 223 22-255 4-243 (246)
289 KOG4190 Uncharacterized conser 98.8 2.5E-08 5.4E-13 110.2 11.9 276 15-304 733-1032(1034)
290 KOG0309 Conserved WD40 repeat- 98.8 4.2E-08 9.1E-13 112.1 13.0 281 18-308 25-339 (1081)
291 KOG2041 WD40 repeat protein [G 98.8 1.7E-06 3.6E-11 98.9 24.1 249 6-269 61-339 (1189)
292 PF07433 DUF1513: Protein of u 98.8 5.1E-06 1.1E-10 89.6 26.9 232 22-261 9-279 (305)
293 KOG0882 Cyclophilin-related pe 98.7 1.8E-07 3.9E-12 102.1 14.8 263 16-282 8-320 (558)
294 PF13360 PQQ_2: PQQ-like domai 98.7 4.1E-06 8.9E-11 89.2 24.9 227 39-273 2-236 (238)
295 KOG4532 WD40-like repeat conta 98.7 2.7E-06 5.9E-11 87.6 21.4 248 38-297 50-321 (344)
296 KOG0309 Conserved WD40 repeat- 98.7 8.9E-08 1.9E-12 109.5 11.4 244 18-269 68-341 (1081)
297 PF15492 Nbas_N: Neuroblastoma 98.7 7E-06 1.5E-10 86.1 24.3 227 67-310 3-261 (282)
298 PF15492 Nbas_N: Neuroblastoma 98.7 1.3E-05 2.8E-10 84.2 25.9 231 23-275 3-267 (282)
299 COG5170 CDC55 Serine/threonine 98.7 3.1E-07 6.7E-12 95.9 13.8 244 61-306 26-365 (460)
300 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.4E-10 85.9 26.4 219 82-311 2-233 (238)
301 PRK11138 outer membrane biogen 98.6 9.5E-06 2.1E-10 93.7 26.8 257 29-307 120-393 (394)
302 PRK11138 outer membrane biogen 98.6 1.4E-05 3E-10 92.4 26.8 271 29-312 69-357 (394)
303 KOG4714 Nucleoporin [Nuclear s 98.6 6.8E-07 1.5E-11 91.6 13.0 235 64-306 39-316 (319)
304 PF07433 DUF1513: Protein of u 98.6 6.9E-05 1.5E-09 81.0 28.8 235 63-303 6-280 (305)
305 KOG3914 WD repeat protein WDR4 98.5 1.2E-06 2.6E-11 95.1 13.8 162 20-184 65-232 (390)
306 KOG1920 IkappaB kinase complex 98.5 2.3E-05 5E-10 95.5 24.9 275 16-306 67-363 (1265)
307 COG5170 CDC55 Serine/threonine 98.5 6.1E-06 1.3E-10 86.4 16.6 246 17-266 26-366 (460)
308 KOG4714 Nucleoporin [Nuclear s 98.4 7.2E-07 1.6E-11 91.5 9.1 148 28-176 100-255 (319)
309 KOG1275 PAB-dependent poly(A) 98.4 4.3E-06 9.4E-11 98.4 16.2 181 72-265 146-340 (1118)
310 KOG3914 WD repeat protein WDR4 98.4 2.4E-06 5.3E-11 92.8 12.8 158 148-313 65-228 (390)
311 KOG2066 Vacuolar assembly/sort 98.4 1.2E-05 2.6E-10 94.0 18.3 187 18-224 40-233 (846)
312 PF14583 Pectate_lyase22: Olig 98.3 0.00024 5.2E-09 79.1 26.5 278 23-311 41-384 (386)
313 KOG1645 RING-finger-containing 98.3 5.2E-05 1.1E-09 82.4 20.1 245 55-309 187-462 (463)
314 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00047 1E-08 71.3 25.6 145 25-172 18-162 (354)
315 PF06433 Me-amine-dh_H: Methyl 98.3 0.00043 9.2E-09 75.9 26.6 265 40-313 17-325 (342)
316 KOG2114 Vacuolar assembly/sort 98.3 0.00015 3.3E-09 85.6 24.5 207 19-237 27-256 (933)
317 PRK02888 nitrous-oxide reducta 98.3 0.00015 3.4E-09 85.0 24.7 254 27-297 139-450 (635)
318 cd00216 PQQ_DH Dehydrogenases 98.3 0.00041 8.8E-09 82.4 29.0 273 30-313 62-429 (488)
319 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0006 1.3E-08 77.5 28.0 263 26-296 1-345 (353)
320 KOG3617 WD40 and TPR repeat-co 98.2 2.3E-05 5.1E-10 91.3 16.0 247 65-317 19-342 (1416)
321 KOG2695 WD40 repeat protein [G 98.2 3.4E-06 7.3E-11 89.7 8.2 145 38-185 232-386 (425)
322 PF06433 Me-amine-dh_H: Methyl 98.2 0.00094 2E-08 73.2 27.2 251 22-277 40-330 (342)
323 KOG1920 IkappaB kinase complex 98.2 0.00011 2.4E-09 89.8 21.6 234 61-307 68-321 (1265)
324 KOG2695 WD40 repeat protein [G 98.2 5.5E-06 1.2E-10 88.1 9.5 150 77-234 228-386 (425)
325 KOG0882 Cyclophilin-related pe 98.2 2.3E-05 4.9E-10 86.1 14.3 243 60-311 8-308 (558)
326 KOG2066 Vacuolar assembly/sort 98.2 4.3E-05 9.4E-10 89.6 17.1 178 105-308 41-233 (846)
327 KOG3617 WD40 and TPR repeat-co 98.1 9.8E-05 2.1E-09 86.4 18.5 107 24-133 22-131 (1416)
328 KOG1645 RING-finger-containing 98.1 0.0001 2.3E-09 80.2 17.4 246 15-267 191-461 (463)
329 COG3391 Uncharacterized conser 98.1 0.0033 7.2E-08 72.2 30.9 264 20-290 33-310 (381)
330 COG0823 TolB Periplasmic compo 98.1 0.00027 5.8E-09 81.6 21.6 205 83-299 173-390 (425)
331 KOG2114 Vacuolar assembly/sort 98.1 0.00039 8.4E-09 82.3 22.7 203 63-272 27-248 (933)
332 KOG3621 WD40 repeat-containing 98.1 0.00077 1.7E-08 78.5 24.6 280 17-309 33-354 (726)
333 KOG1275 PAB-dependent poly(A) 98.1 0.00012 2.6E-09 86.7 17.8 180 114-306 146-340 (1118)
334 PRK02888 nitrous-oxide reducta 98.0 0.00075 1.6E-08 79.4 23.2 224 76-309 69-405 (635)
335 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0037 8.1E-08 72.3 28.8 211 84-306 62-285 (410)
336 PF04053 Coatomer_WDAD: Coatom 98.0 0.00099 2.2E-08 77.2 23.7 217 61-308 32-262 (443)
337 PF00400 WD40: WD domain, G-be 98.0 2.1E-05 4.6E-10 58.3 6.3 38 136-173 2-39 (39)
338 PF04053 Coatomer_WDAD: Coatom 98.0 0.0013 2.8E-08 76.3 24.0 217 18-270 33-265 (443)
339 PF11768 DUF3312: Protein of u 97.9 0.0064 1.4E-07 70.2 28.3 75 235-310 257-331 (545)
340 PF00400 WD40: WD domain, G-be 97.9 2.6E-05 5.6E-10 57.8 6.3 39 226-265 1-39 (39)
341 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.007 1.5E-07 72.3 30.1 282 29-314 69-496 (527)
342 COG0823 TolB Periplasmic compo 97.9 0.00055 1.2E-08 79.1 19.6 190 56-257 187-389 (425)
343 KOG1008 Uncharacterized conser 97.9 4.9E-06 1.1E-10 94.8 1.8 202 18-224 57-275 (783)
344 KOG1008 Uncharacterized conser 97.8 8.4E-06 1.8E-10 93.0 2.3 199 104-309 57-276 (783)
345 cd00216 PQQ_DH Dehydrogenases 97.8 0.0087 1.9E-07 71.2 27.5 239 30-282 111-439 (488)
346 PF06977 SdiA-regulated: SdiA- 97.8 0.015 3.2E-07 62.2 26.4 205 98-305 16-247 (248)
347 PF02897 Peptidase_S9_N: Proly 97.8 0.011 2.5E-07 68.6 27.9 246 19-273 125-410 (414)
348 PF06977 SdiA-regulated: SdiA- 97.7 0.0051 1.1E-07 65.7 21.9 204 57-264 17-247 (248)
349 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0015 3.3E-08 74.2 19.0 238 70-309 1-314 (353)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.034 7.3E-07 64.5 29.3 212 22-250 33-272 (410)
351 PF11768 DUF3312: Protein of u 97.6 0.0055 1.2E-07 70.7 21.3 120 104-232 206-337 (545)
352 PF08596 Lgl_C: Lethal giant l 97.6 0.014 3E-07 66.9 24.8 229 63-296 3-324 (395)
353 KOG3621 WD40 repeat-containing 97.6 0.00049 1.1E-08 80.1 12.7 202 103-310 33-246 (726)
354 COG3386 Gluconolactonase [Carb 97.6 0.011 2.4E-07 65.4 22.8 223 24-256 31-274 (307)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.043 9.2E-07 65.7 29.5 249 30-282 121-505 (527)
356 COG3386 Gluconolactonase [Carb 97.6 0.019 4.1E-07 63.5 23.9 219 68-298 31-275 (307)
357 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.036 7.9E-07 57.8 23.5 193 73-280 23-219 (354)
358 PF00780 CNH: CNH domain; Int 97.5 0.041 9E-07 60.0 26.3 235 27-277 5-265 (275)
359 COG3391 Uncharacterized conser 97.5 0.023 4.9E-07 65.4 25.1 218 21-248 77-309 (381)
360 PF03178 CPSF_A: CPSF A subuni 97.5 0.013 2.9E-07 65.5 22.5 213 84-307 3-264 (321)
361 PF00780 CNH: CNH domain; Int 97.3 0.11 2.3E-06 56.8 26.4 221 71-313 5-260 (275)
362 PF08596 Lgl_C: Lethal giant l 97.3 0.039 8.4E-07 63.3 23.1 229 19-256 3-325 (395)
363 PF02897 Peptidase_S9_N: Proly 97.2 0.22 4.8E-06 57.8 29.0 240 63-311 125-407 (414)
364 PF08553 VID27: VID27 cytoplas 97.2 0.0059 1.3E-07 74.6 16.0 145 116-266 494-646 (794)
365 PF03178 CPSF_A: CPSF A subuni 97.2 0.047 1E-06 61.2 22.4 211 41-264 3-262 (321)
366 PF14583 Pectate_lyase22: Olig 97.2 0.14 3E-06 57.6 25.2 221 68-298 42-302 (386)
367 KOG4640 Anaphase-promoting com 97.2 0.0015 3.3E-08 75.2 10.0 91 195-287 21-114 (665)
368 PRK13616 lipoprotein LpqB; Pro 97.2 0.034 7.4E-07 67.1 21.9 188 62-261 350-562 (591)
369 PRK13616 lipoprotein LpqB; Pro 97.2 0.041 9E-07 66.4 22.5 193 104-303 350-563 (591)
370 KOG1897 Damage-specific DNA bi 97.0 0.82 1.8E-05 56.1 30.0 286 15-307 528-897 (1096)
371 PRK10115 protease 2; Provision 97.0 1.6 3.6E-05 54.1 34.4 242 18-270 127-397 (686)
372 COG3490 Uncharacterized protei 97.0 0.071 1.5E-06 56.4 18.7 237 23-265 73-346 (366)
373 KOG2444 WD40 repeat protein [G 96.8 0.005 1.1E-07 63.2 8.7 140 160-308 33-177 (238)
374 KOG2395 Protein involved in va 96.8 0.016 3.4E-07 65.9 13.3 148 114-266 344-499 (644)
375 KOG4640 Anaphase-promoting com 96.8 0.0061 1.3E-07 70.5 10.1 95 145-247 20-115 (665)
376 PF05096 Glu_cyclase_2: Glutam 96.7 0.31 6.8E-06 52.1 21.8 185 64-255 47-249 (264)
377 PF14870 PSII_BNR: Photosynthe 96.7 1.4 3E-05 48.7 29.0 193 64-264 106-301 (302)
378 COG3204 Uncharacterized protei 96.7 0.24 5.2E-06 53.1 20.1 171 99-269 81-265 (316)
379 PF05694 SBP56: 56kDa selenium 96.7 0.41 8.8E-06 54.4 23.0 229 28-256 86-392 (461)
380 KOG1897 Damage-specific DNA bi 96.7 2.4 5.2E-05 52.3 30.6 292 18-313 488-861 (1096)
381 PF08553 VID27: VID27 cytoplas 96.5 0.1 2.3E-06 64.1 18.9 142 73-223 493-646 (794)
382 PF15390 DUF4613: Domain of un 96.5 0.9 2E-05 53.0 24.7 148 19-174 21-185 (671)
383 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.17 3.7E-06 46.6 15.1 100 64-170 2-109 (111)
384 COG3204 Uncharacterized protei 96.4 0.62 1.3E-05 50.1 21.3 204 20-225 45-264 (316)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.34 7.4E-06 55.7 20.6 91 21-113 5-118 (415)
386 PF07995 GSDH: Glucose / Sorbo 96.3 1.4 3E-05 49.6 25.4 240 19-262 3-330 (331)
387 TIGR03074 PQQ_membr_DH membran 96.3 0.9 2E-05 56.6 25.5 201 73-274 194-484 (764)
388 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.22 4.8E-06 45.9 15.1 100 197-303 2-109 (111)
389 PF05694 SBP56: 56kDa selenium 96.3 0.94 2E-05 51.5 23.1 221 72-297 86-392 (461)
390 KOG2079 Vacuolar assembly/sort 96.3 0.045 9.7E-07 67.1 13.4 103 71-175 97-203 (1206)
391 smart00320 WD40 WD40 repeats. 96.3 0.013 2.7E-07 41.1 5.8 38 136-173 3-40 (40)
392 PHA02713 hypothetical protein; 96.1 0.24 5.1E-06 59.9 18.9 188 72-272 303-538 (557)
393 PRK10115 protease 2; Provision 96.1 5.7 0.00012 49.4 31.2 111 62-174 127-254 (686)
394 COG3490 Uncharacterized protei 96.1 0.21 4.5E-06 53.1 15.5 190 24-224 120-348 (366)
395 KOG4499 Ca2+-binding protein R 96.0 0.98 2.1E-05 46.8 19.6 215 25-247 22-263 (310)
396 PF15390 DUF4613: Domain of un 96.0 0.3 6.5E-06 56.8 17.8 158 102-269 18-188 (671)
397 PF10647 Gmad1: Lipoprotein Lp 96.0 2.2 4.8E-05 46.1 24.1 147 105-259 25-187 (253)
398 smart00320 WD40 WD40 repeats. 96.0 0.018 3.9E-07 40.3 5.3 38 227-265 3-40 (40)
399 PF10647 Gmad1: Lipoprotein Lp 95.9 1.9 4.1E-05 46.5 23.1 153 63-216 25-187 (253)
400 TIGR02604 Piru_Ver_Nterm putat 95.9 1.4 3E-05 50.5 23.2 143 18-164 14-202 (367)
401 PHA02713 hypothetical protein; 95.6 0.66 1.4E-05 56.1 20.0 214 84-311 273-536 (557)
402 PF07995 GSDH: Glucose / Sorbo 95.6 5.2 0.00011 45.1 27.6 237 63-303 3-330 (331)
403 KOG4441 Proteins containing BT 95.6 0.79 1.7E-05 55.5 20.3 228 29-270 285-549 (571)
404 KOG2079 Vacuolar assembly/sort 95.6 0.16 3.4E-06 62.5 13.9 102 28-132 98-202 (1206)
405 PF05096 Glu_cyclase_2: Glutam 95.5 3.1 6.8E-05 44.7 22.0 190 18-213 45-249 (264)
406 PF14727 PHTB1_N: PTHB1 N-term 95.5 6.5 0.00014 45.4 29.8 272 30-309 38-361 (418)
407 TIGR03074 PQQ_membr_DH membran 95.3 2.6 5.6E-05 52.6 23.6 160 73-233 260-486 (764)
408 KOG2444 WD40 repeat protein [G 95.3 0.049 1.1E-06 56.2 7.2 135 38-175 38-177 (238)
409 KOG4441 Proteins containing BT 95.2 0.71 1.5E-05 55.8 18.3 226 72-311 284-549 (571)
410 PHA03098 kelch-like protein; P 95.1 1.3 2.8E-05 53.4 20.4 191 71-274 293-518 (534)
411 KOG2280 Vacuolar assembly/sort 95.1 1.9 4.1E-05 51.7 20.4 196 83-290 64-271 (829)
412 PF14870 PSII_BNR: Photosynthe 94.8 7.9 0.00017 42.8 34.5 268 17-305 16-301 (302)
413 KOG3630 Nuclear pore complex, 94.7 0.29 6.4E-06 60.5 12.7 143 104-255 101-261 (1405)
414 KOG4499 Ca2+-binding protein R 94.6 4 8.6E-05 42.6 18.5 207 73-289 27-264 (310)
415 COG5276 Uncharacterized conser 94.5 8.4 0.00018 41.6 27.6 272 20-307 89-368 (370)
416 COG4257 Vgb Streptogramin lyas 94.5 7.7 0.00017 41.5 20.8 239 62-309 62-306 (353)
417 PF13449 Phytase-like: Esteras 94.2 12 0.00025 42.1 23.8 151 103-254 19-231 (326)
418 KOG2280 Vacuolar assembly/sort 94.2 3.4 7.5E-05 49.6 19.5 214 23-249 38-271 (829)
419 PRK13684 Ycf48-like protein; P 94.1 13 0.00027 42.0 24.5 155 103-266 172-330 (334)
420 PLN00033 photosystem II stabil 94.0 15 0.00032 42.5 26.6 150 106-264 241-396 (398)
421 KOG3630 Nuclear pore complex, 93.9 0.53 1.2E-05 58.4 12.5 146 62-211 101-260 (1405)
422 COG1520 FOG: WD40-like repeat 93.5 16 0.00034 41.8 23.6 224 71-309 67-306 (370)
423 KOG2395 Protein involved in va 93.3 0.68 1.5E-05 53.1 11.3 146 26-175 342-500 (644)
424 TIGR02604 Piru_Ver_Nterm putat 93.2 1.7 3.8E-05 49.6 15.0 141 146-296 14-201 (367)
425 PHA03098 kelch-like protein; P 92.9 3.1 6.8E-05 50.1 17.3 145 72-226 342-513 (534)
426 PF10214 Rrn6: RNA polymerase 92.8 35 0.00075 43.2 28.5 207 101-310 77-331 (765)
427 PF12894 Apc4_WD40: Anaphase-p 92.8 0.3 6.4E-06 37.9 5.4 32 236-267 10-41 (47)
428 PF10168 Nup88: Nuclear pore c 92.7 20 0.00043 44.6 23.8 75 103-178 84-182 (717)
429 TIGR03547 muta_rot_YjhT mutatr 92.5 20 0.00044 40.4 22.4 54 71-124 62-128 (346)
430 PF10168 Nup88: Nuclear pore c 92.3 6.1 0.00013 49.0 18.8 75 18-93 85-181 (717)
431 KOG1916 Nuclear protein, conta 91.9 0.14 3E-06 61.6 3.8 134 38-174 109-264 (1283)
432 PF12894 Apc4_WD40: Anaphase-p 91.8 0.5 1.1E-05 36.7 5.6 33 275-307 8-40 (47)
433 TIGR03606 non_repeat_PQQ dehyd 91.8 17 0.00038 42.5 20.7 113 144-258 28-166 (454)
434 PHA02790 Kelch-like protein; P 91.7 7.9 0.00017 46.0 18.5 182 72-270 271-473 (480)
435 PF05935 Arylsulfotrans: Aryls 91.6 26 0.00056 41.6 22.6 149 81-234 126-311 (477)
436 TIGR03118 PEPCTERM_chp_1 conse 91.2 27 0.00057 38.3 25.5 223 63-288 24-307 (336)
437 PF08728 CRT10: CRT10; InterP 91.0 6.1 0.00013 48.3 16.4 145 29-175 49-246 (717)
438 PF08728 CRT10: CRT10; InterP 90.9 8.5 0.00018 47.1 17.4 148 157-307 49-245 (717)
439 COG1520 FOG: WD40-like repeat 90.9 34 0.00074 39.0 28.5 193 38-234 76-278 (370)
440 COG5167 VID27 Protein involved 90.8 2.9 6.4E-05 47.9 12.5 145 113-267 477-632 (776)
441 PF12234 Rav1p_C: RAVE protein 90.7 4.8 0.0001 48.7 15.0 111 198-310 33-158 (631)
442 KOG2377 Uncharacterized conser 90.7 4 8.8E-05 46.2 13.3 152 22-177 27-187 (657)
443 PHA02790 Kelch-like protein; P 90.5 12 0.00025 44.6 18.3 143 71-226 317-472 (480)
444 PRK13684 Ycf48-like protein; P 90.4 35 0.00076 38.4 30.5 270 17-307 45-330 (334)
445 PF12234 Rav1p_C: RAVE protein 90.4 6.8 0.00015 47.4 16.0 113 146-266 30-155 (631)
446 PF10433 MMS1_N: Mono-function 90.4 46 0.001 39.8 30.1 253 26-288 219-503 (504)
447 PLN02153 epithiospecifier prot 90.2 37 0.0008 38.2 22.8 65 114-178 85-170 (341)
448 PRK14131 N-acetylneuraminic ac 89.8 42 0.00092 38.4 23.4 97 28-124 38-149 (376)
449 COG3292 Predicted periplasmic 89.7 17 0.00036 42.8 17.5 271 17-303 164-442 (671)
450 TIGR03548 mutarot_permut cycli 88.3 47 0.001 37.0 22.2 106 72-178 72-197 (323)
451 COG1506 DAP2 Dipeptidyl aminop 87.9 77 0.0017 39.0 24.9 279 16-308 58-384 (620)
452 COG4590 ABC-type uncharacteriz 87.9 1.9 4.1E-05 48.7 8.2 165 99-269 216-388 (733)
453 KOG4460 Nuclear pore complex, 87.5 9.5 0.00021 44.1 13.5 101 105-234 105-208 (741)
454 PF07569 Hira: TUP1-like enhan 87.0 2.5 5.3E-05 44.6 8.4 71 153-224 18-95 (219)
455 KOG2247 WD40 repeat-containing 86.7 0.1 2.2E-06 59.1 -2.3 142 148-301 37-181 (615)
456 PF13449 Phytase-like: Esteras 86.5 44 0.00096 37.5 18.7 162 146-308 20-249 (326)
457 PF10214 Rrn6: RNA polymerase 86.4 61 0.0013 41.0 21.7 112 195-309 146-277 (765)
458 COG5290 IkappaB kinase complex 86.2 18 0.0004 43.8 15.3 107 106-222 249-364 (1243)
459 PF07569 Hira: TUP1-like enhan 86.0 4.2 9.2E-05 42.8 9.5 67 245-312 18-99 (219)
460 PF14761 HPS3_N: Hermansky-Pud 85.7 28 0.00061 36.2 14.8 137 158-307 29-213 (215)
461 KOG1900 Nuclear pore complex, 85.7 1.3E+02 0.0028 39.3 23.3 153 20-176 81-273 (1311)
462 PF14727 PHTB1_N: PTHB1 N-term 85.6 78 0.0017 36.8 27.2 224 73-309 37-319 (418)
463 COG5276 Uncharacterized conser 85.5 60 0.0013 35.3 24.5 197 62-269 87-287 (370)
464 smart00036 CNH Domain found in 85.4 65 0.0014 35.7 28.6 238 28-277 12-280 (302)
465 KOG1916 Nuclear protein, conta 85.2 0.87 1.9E-05 55.2 4.2 162 15-180 130-328 (1283)
466 COG3823 Glutamine cyclotransfe 85.2 22 0.00047 36.7 13.3 178 72-255 55-247 (262)
467 KOG2247 WD40 repeat-containing 85.2 0.13 2.8E-06 58.2 -2.4 148 20-172 37-185 (615)
468 TIGR03606 non_repeat_PQQ dehyd 85.0 87 0.0019 36.8 20.5 109 104-215 30-166 (454)
469 PF03022 MRJP: Major royal jel 84.6 68 0.0015 35.3 19.7 171 84-255 35-253 (287)
470 COG5167 VID27 Protein involved 84.3 11 0.00023 43.5 11.9 145 25-175 475-632 (776)
471 PLN02193 nitrile-specifier pro 84.2 97 0.0021 36.7 24.4 194 72-272 175-415 (470)
472 PF03022 MRJP: Major royal jel 84.2 71 0.0015 35.1 19.0 170 126-296 35-253 (287)
473 KOG2377 Uncharacterized conser 84.1 35 0.00076 39.1 15.6 127 143-274 64-192 (657)
474 PF14781 BBS2_N: Ciliary BBSom 84.0 23 0.00051 34.0 12.3 103 201-306 5-123 (136)
475 TIGR03118 PEPCTERM_chp_1 conse 84.0 73 0.0016 35.0 20.4 200 105-312 24-283 (336)
476 PLN00033 photosystem II stabil 83.6 93 0.002 36.0 34.2 145 148-305 241-396 (398)
477 COG3823 Glutamine cyclotransfe 83.6 45 0.00098 34.5 14.8 172 114-296 55-247 (262)
478 KOG2063 Vacuolar assembly/sort 83.1 53 0.0012 41.4 18.3 237 25-275 22-276 (877)
479 PF11635 Med16: Mediator compl 83.0 81 0.0017 39.8 20.4 68 195-262 260-345 (753)
480 PF14655 RAB3GAP2_N: Rab3 GTPa 81.8 10 0.00023 43.7 11.0 82 143-233 305-407 (415)
481 PF05935 Arylsulfotrans: Aryls 81.6 67 0.0014 38.2 18.2 146 123-277 126-311 (477)
482 PF10395 Utp8: Utp8 family; I 81.4 1.4E+02 0.0031 36.5 21.7 167 61-233 129-314 (670)
483 KOG4460 Nuclear pore complex, 81.1 18 0.00039 42.0 12.1 96 196-313 105-203 (741)
484 KOG0783 Uncharacterized conser 80.2 43 0.00092 41.2 15.2 70 21-93 188-258 (1267)
485 PF14781 BBS2_N: Ciliary BBSom 79.9 59 0.0013 31.3 13.5 116 22-140 3-132 (136)
486 PF10433 MMS1_N: Mono-function 79.7 1.4E+02 0.0031 35.6 21.0 228 70-309 219-477 (504)
487 PLN02193 nitrile-specifier pro 79.7 1.4E+02 0.003 35.4 24.4 149 72-227 228-413 (470)
488 PF10313 DUF2415: Uncharacteri 79.3 6.4 0.00014 29.9 5.4 32 146-177 1-35 (43)
489 PF12657 TFIIIC_delta: Transcr 78.6 13 0.00029 37.5 9.5 30 279-308 86-121 (173)
490 COG5290 IkappaB kinase complex 78.1 32 0.00069 41.9 13.3 96 148-250 249-349 (1243)
491 COG1506 DAP2 Dipeptidyl aminop 78.0 96 0.0021 38.2 18.6 168 100-297 56-234 (620)
492 KOG1983 Tomosyn and related SN 77.9 39 0.00086 43.7 15.5 31 62-92 36-66 (993)
493 PLN02153 epithiospecifier prot 77.7 1.2E+02 0.0027 34.0 18.2 104 71-178 136-287 (341)
494 PRK14131 N-acetylneuraminic ac 76.7 1.4E+02 0.0031 34.0 20.5 95 72-166 38-149 (376)
495 PF10313 DUF2415: Uncharacteri 76.6 7 0.00015 29.7 4.9 31 104-134 1-34 (43)
496 TIGR03548 mutarot_permut cycli 75.5 1.4E+02 0.003 33.2 21.8 107 114-227 72-197 (323)
497 PF12657 TFIIIC_delta: Transcr 75.3 11 0.00024 38.0 7.9 31 104-134 86-122 (173)
498 PF02333 Phytase: Phytase; In 75.3 1.6E+02 0.0034 33.8 22.4 193 113-310 66-292 (381)
499 TIGR03547 muta_rot_YjhT mutatr 75.2 1.5E+02 0.0032 33.3 22.0 54 113-166 62-128 (346)
500 PRK05560 DNA gyrase subunit A; 74.9 2.5E+02 0.0053 35.8 25.9 235 70-308 495-772 (805)
No 1
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-133 Score=1139.73 Aligned_cols=854 Identities=34% Similarity=0.530 Sum_probs=700.1
Q ss_pred CCccccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE
Q 002266 1 MKVRSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS 80 (945)
Q Consensus 1 Mk~~~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs 80 (945)
|+...+++|++|. ...+.|+|.|+|.+|++++ .||.|++|+.......+.++..+...|.+++.. +.+|++|+
T Consensus 1 M~~~r~klRyaht----~G~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s 73 (933)
T KOG1274|consen 1 MSSTRLKLRYAHT----GGLTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGS 73 (933)
T ss_pred CCcccccchhhcc----CceEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEee
Confidence 8899999999999 4488899999999999887 999999999877756677776678888888664 45999999
Q ss_pred cCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEE
Q 002266 81 IDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYL 160 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~L 160 (945)
.+++|.+|.+.+++....+.+++.++++++|+.+|+++|.|++|-.|++.++.+......+++|.++|.++.|+|++++|
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCeeeeeecccCCCCCCC-CCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC-
Q 002266 161 ASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD-PSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ- 238 (945)
Q Consensus 161 as~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~-~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~- 238 (945)
|+++.||.|+|||+.++.....+....+..... ...+..++|+|+|..|++.+.++.|++|++.+|...+.+...+..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 999999999999999999888888776666555 456778999999888888888999999999999999888765443
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCCC--CC
Q 002266 239 PICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMK--SP 316 (945)
Q Consensus 239 ~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~~--~~ 316 (945)
.++.++|+|+|.|||+++.||.|.|||+++ ..+......|++++|.|+.+.|-.....|...+|.-.++.... .+
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~~iv~~S~~~~~~ 310 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALGTLGVSPAIVPNSGLSVLS 310 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeeccccccChhhcccccccccC
Confidence 499999999999999999999999999998 3334456789999999999999999999999999888887766 55
Q ss_pred CCCCCCCccCCCCc-eeeccCCCCCCCC--------C-CCCCCCCCCCCCCCCcchhcccccCCCCCccccccccccCCC
Q 002266 317 TEDIPSSRSNYNGL-LLFDEEEKEPSTS--------G-SLSDLGEDSHGESEMPSRKRLRKQTVFDEDLDEEVNDELNLF 386 (945)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~d~dddee~~~--------~-~~~dd~dddd~d~~~~~~kr~~~~~~~ddd~ddD~~Dd~~~~ 386 (945)
+-..++...+.... ..+|++.+.+++. + ..+++.|+.++|++..+++++++....++|.+|-+|++.+ +
T Consensus 311 tv~~~d~v~k~~~~~l~~Dd~~~~~d~~~~~~~~~s~~~~~~~~d~a~~Ed~~t~~~~lrk~~~~~eD~~d~~e~~~~-~ 389 (933)
T KOG1274|consen 311 TVPLQDSVEKKRNSGLDVDDEVDLEDDEGNDDINKSEKLDSDINDEANEEDEFTSHDGLRKRKYNFEDEEDFDEDDNG-L 389 (933)
T ss_pred CcccccccccCCCcCcccchhhcccccccccccccchhhccccccccccccccccccchhhhcccccCccchhhhccc-c
Confidence 65666555553333 3333332222211 1 1123445555566666677776665554443332222221 1
Q ss_pred ccccccccccCCCcccccCCCCCcccccccccCCCCCccCCCcCCCCCCeeEEEeeceeEEEEEecCC-ccEEEEEEEcC
Q 002266 387 PKTESRKKAHSTHKEYSDKGNGSRSMRTSTRKNMQEAFQPGATPVQPGKRRFLCYNMLGTITTMEHDG-YSHIEIDFHDT 465 (945)
Q Consensus 387 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~fqPgsTp~~~~~rRyL~~N~iG~i~~~~~~~-~~sI~VeFhD~ 465 (945)
...+..|. .|.. ......+.......+.++|.||||||||+++++|||||||+||+|+++.+++ +++|+|||||+
T Consensus 390 ~~~s~~k~---~~s~-~~~T~~~p~~~a~~~~~rq~pFqpgsTP~~l~~R~yL~~N~vGiI~t~~~e~~~ssIdVeFHD~ 465 (933)
T KOG1274|consen 390 GYSSSKKP---GHSL-VHRTHPFPISSANTPKPRQKPFQPGSTPFDLTHRRYLCYNEVGIIRTVVNEANDSSIDVEFHDT 465 (933)
T ss_pred CCccccCc---cccc-cccccccccccCCCccccccCCCCCCCCCCCCcceEEEeeccceEEEEeccCcCceEEEEEecc
Confidence 11111211 1100 0001122222233455889999999999999887899999999999999887 99999999999
Q ss_pred CCCCCCcccccCCCceeeecCcceeEEeecCCCCCCcceEEEEeCCCCCCCCccEEEeC-CceEEEEEEcCCEEEEEeCC
Q 002266 466 GRGPRVPSMTDYFGFTMASLNENGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFE-GEEVKAVALGTAWVAAVTSL 544 (945)
Q Consensus 466 s~~~~~~~~~D~~~~~ma~L~~~g~~~a~~~~~~~~~s~l~~~~~~sw~~~~~W~~~l~-gE~i~~va~g~~~vav~Ts~ 544 (945)
+.| |.|||.|+++|+||+|++.|++||+|+.+++..+.+||+||+ |+.++||++.|| +|+|++||+|++|||||||+
T Consensus 466 sih-r~~H~~d~~~y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~-w~s~seWtm~lP~~E~~~~V~~t~~~Vav~TS~ 543 (933)
T KOG1274|consen 466 SIH-RAYHFSDLFGYELADLSEKGTLLASPESESKLGSILYRAHFS-WDSHSEWTMILPLQESIEAVAATSGWVAVATSL 543 (933)
T ss_pred Ccc-ceeeeeccccceeeeccccceEEecccccCCcceEEEEcccC-cccccceeeecCCCCceeEEEccCcEEEEEecc
Confidence 987 679999999999999999999999998877676777777777 999999999996 59999999999999999999
Q ss_pred CeEEEeecCCcc-----------------ceeEEEEEccCC----CceeEEEEEEecCCcceee--cceeCCCCCceeEE
Q 002266 545 NFLRIFTEGGFQ-----------------DQLAVVTHVSDC----DQMLEFRVFNIAKGTEPLK--GRLPLTPGSQLTWF 601 (945)
Q Consensus 545 ~~lRifs~~G~~-----------------~~l~vv~~~~~~----~q~l~~~~~~~~~~~~~~~--~~lpl~~~~~L~W~ 601 (945)
||||+||.+|+| ++|+||||.+.+ +|.|.|+++||+...+.+. +++||+||++|+||
T Consensus 544 ~~lRvFt~gGvq~~I~t~~gP~vtaag~~d~L~iv~h~s~~~~~~eq~l~~~l~nIn~~~~~~~~~d~vpltpg~~L~wi 623 (933)
T KOG1274|consen 544 GYLRVFTIGGVQREIFTLPGPVVTAAGFEDSLAIVYHSSKRFYGREQRLEVSLPNINKDSKKQENLDPVPLTPGGQLTWI 623 (933)
T ss_pred ceEEEEEecceeeeEeecccceEEeecccceEEEEEecCCCCCcccceeEEEeeccChHHHHHhcCCCcccCCCCeeEEE
Confidence 999999999999 889999999855 7899999999998877665 48999999999999
Q ss_pred EecCCCceEEEcCcceEEEeecCCCCeeEEcccCCcCCC-CCccEEEEEEeCCeEEEEEecCCCCCCCCCCCceeEEEEE
Q 002266 602 GFSEEGQLSSYDSKGILRVYTNLYGGSWLPIFSASKDKK-SDENYWIVGLNASKLFCIVCKNPDLFPQVMPKPVLTLLDL 680 (945)
Q Consensus 602 gfs~~g~p~~~Ds~gvl~~l~~~~~~~WvPv~d~~~~~k-~~~~~w~vgv~~~~l~ci~~kg~~~~P~~~P~P~~~~~~~ 680 (945)
|||++|+||+|||+|+||||+++.++.|+||||++++.+ .+++||||||+.++|+||+|||. .||+++|||++++|+|
T Consensus 624 gfS~~G~p~i~DS~g~l~vl~~~~~~~WiPI~dt~~~~~~~S~~ywpVgl~~~~l~cIlcKGs-~~pp~~PrP~~tel~f 702 (933)
T KOG1274|consen 624 GFSDEGDPCIYDSEGTLLVLSRWRGNKWIPILDTNKEIRKKSDHYWPVGLAYQQLRCILCKGS-RFPPVFPRPAPTELEF 702 (933)
T ss_pred EeccCCCceeecCcceeEeeeccCCCceeEeecchhhhcccccceEEEEEecceEEEEEEcCc-ccCCcCCCCcceeEEE
Confidence 999999999999999999999999999999999998644 49999999999999999999985 7888899999999999
Q ss_pred eeeeecCCCCchhhHHHHHhhcccc--cccchhhhhhhhcCCCCCcchHHHHhHHHHHHHHHHHHHHHHhcCCccchHHH
Q 002266 681 SFPLASSDLGAETLENEFMMNNFHL--SQIPKRMEEVTDAGLDTSSLDDEAFNLEAAQDRCILRLIASCCNGDKLVRATE 758 (945)
Q Consensus 681 ~~Pl~~~~~~~~~~Ee~~~~~~~~l--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~dk~ll~Lf~~ac~~~~~~rA~~ 758 (945)
+||+|+.+.+.+++|++++|..|.+ .+.+...+.....+..+...+.|.+.+|.+.|+++++|++.||+.+...|+++
T Consensus 703 riP~c~~~~~~se~e~~l~~k~l~~~~~e~k~~~ed~ik~~a~s~~~e~e~~~~Ev~~~~a~~~liq~ac~yas~~r~~~ 782 (933)
T KOG1274|consen 703 RIPLCQKEKEASEMEAELNLKQLRLADTEAKTLEEDKIKLFAVSTALEEEYRRLEVASDLATLTLIQSACKYASKNRVLA 782 (933)
T ss_pred eccccccccchhhhHHHHHHHHHhhhhHHHHhhhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999988876 33233333334444455567788899999999999999999999999999999
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCchHHHHHHHHHHHHhccccccCCCcc--cccCCCc--cccceeeccccCCCcccccc
Q 002266 759 LVKLLSLDKSMQGAIKLVTKLKLPNLAERFNSILEERLLSETKETPNTT--LLISNNN--VTARGDVDVSKASTSTERSE 834 (945)
Q Consensus 759 l~~~l~~~~sl~~A~k~A~~~~~~~La~ki~~l~e~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 834 (945)
|++.|....++.+|++.|.+.++..+|+++.+++++|+.+.+.+.. .. ++..+.+ .....+.....++ ...+.
T Consensus 783 L~e~l~e~~~~~aa~~~a~~~~~~~~ae~~~~~l~~r~~~~A~~~s-~~~~~p~~~~~s~~~~~~~~~~~~~P--~~~~~ 859 (933)
T KOG1274|consen 783 LAEKLYELASLRAAASAARKQNLTEAAEKIRELLQARALTTAVSIS-VPAELPSLVEKSSNIREAEKEQQNKP--NLFSL 859 (933)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhhhcccccccc-ccccccccccccchhhhhhhhhccCC--chhhh
Confidence 9999999999999999999999999999999999999999988776 32 2211112 2222222222222 44444
Q ss_pred cccC--CCCCccccCccccccccChhhhhcCCCcccccccccc
Q 002266 835 MVEP--IVPSVKFSLPIFKKKVKSPEEIKLGNEPTIQNQKAKV 875 (945)
Q Consensus 835 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (945)
...+ .+|+++.++|+..+|++...+.++++++..+-..+-.
T Consensus 860 at~s~~~~s~t~~i~~s~~~~~~~~~~~~~~~~~~~k~k~~rs 902 (933)
T KOG1274|consen 860 ATNSFAKSSDTSKITPSALSQASLSIGDQLSKEPNDKRKSARS 902 (933)
T ss_pred hccchhccCCCcccCcchhccccchhhhhcccccccccccccC
Confidence 4444 7888999999999999999999999998776554443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-41 Score=352.51 Aligned_cols=288 Identities=25% Similarity=0.397 Sum_probs=259.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.++|.|++|+|+|+.|++++ .|.++++||+.+. ....+.++|..-|.|++|+|||+.||+|+.||+|++||..+|+
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGs-GD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGS-GDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCCcEEEEEecCCCceEEecC-CCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 7889999999999999999987 8999999999887 5578899999999999999999999999999999999998887
Q ss_pred ee-eecccCCCCEEEEEEec-----CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCc
Q 002266 95 FQ-TNITRFTLPIRVLAFNK-----SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGT 168 (945)
Q Consensus 95 ~~-~~l~~~~~~V~~l~fsp-----dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~ 168 (945)
.+ ..+.+|...|++++|.| ..++||+++.||.|+|||+..+.++..+.+|+.+|+|+.|--+| ++++++.|++
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~Drt 269 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRT 269 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCce
Confidence 65 56889999999999976 67899999999999999999999999999999999999997554 8999999999
Q ss_pred EEEEEccCCeeeeeecccCC------------------------------------------------------------
Q 002266 169 VIYWELQSGRELHNLKRVAP------------------------------------------------------------ 188 (945)
Q Consensus 169 I~iwDl~t~~~i~~~~~~~~------------------------------------------------------------ 188 (945)
|++|+...|...+.++++..
T Consensus 270 Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf 349 (480)
T KOG0271|consen 270 IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF 349 (480)
T ss_pred EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence 99999877654433322110
Q ss_pred ------------CCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEE
Q 002266 189 ------------DIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSS 256 (945)
Q Consensus 189 ------------~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs 256 (945)
...+|...|+.+.|+||++++|+++.|..|++||-++|+.+.+|.+ |-.+|+.++||.|.++|++|+
T Consensus 350 lW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-Hv~~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 350 LWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-HVAAVYQVAWSADSRLLVSGS 428 (480)
T ss_pred EecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-ccceeEEEEeccCccEEEEcC
Confidence 1123345688999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 257 LDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 257 ~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
.|.+++||++++.++..- .+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999888776 56999999999999999999999999999994
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-39 Score=341.48 Aligned_cols=282 Identities=22% Similarity=0.348 Sum_probs=267.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecC--CCEEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPN--STCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spd--g~~Lasgs~Dg~V~iwdl~~ 92 (945)
|...+|..+.|+.+++.|+|++ .+|.++||..... ....++.+|...|.++.|+|. +..||+|+.||+|++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~s-wsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGS-WSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEee-cCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 7789999999999999999997 9999999998877 678899999999999999996 57999999999999999998
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
...+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|+|||.++++|+.|..-+||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 88999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-CCCE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP-NGKY 251 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp-dg~~ 251 (945)
|++++.++..+.. |...|..++|+|+|..||+|+.|++++|||++....+.+++. |..-|+.|+|+| .|.+
T Consensus 331 DlRtgr~im~L~g-------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG-------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYF 402 (459)
T ss_pred ecccCcEEEEecc-------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-ccchhhheEecccCCeE
Confidence 9999999988874 557889999999999999999999999999999888888887 999999999999 7899
Q ss_pred EEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 252 MATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
|+|++.|++++||...+..++.. .+|.+.|.++..++++..+++++.|.++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999998887 78999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=302.25 Aligned_cols=290 Identities=19% Similarity=0.344 Sum_probs=261.0
Q ss_pred cccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcE
Q 002266 6 VKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSV 85 (945)
Q Consensus 6 i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V 85 (945)
++.+...+ ||.+.|.++.|++|.++|++++ .||.+.|||..+.. ....+.-....|..++|+|.|+++|+|+-|+..
T Consensus 45 ~~~rr~Lk-GH~~Ki~~~~ws~Dsr~ivSaS-qDGklIvWDs~Ttn-K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLK-GHLNKIYAMDWSTDSRRIVSAS-QDGKLIVWDSFTTN-KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEec-ccccceeeeEecCCcCeEEeec-cCCeEEEEEccccc-ceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 34455566 7889999999999999999996 99999999988763 355566667889999999999999999999999
Q ss_pred EEEEcCCC------eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCC
Q 002266 86 KLYKFPGG------EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSE 158 (945)
Q Consensus 86 ~iwdl~~g------~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~ 158 (945)
.||++.+. ...+.+.+|++.+.|+.|.+| ..|++++.|.+..+||++++..+..+.+|.+.|.+++++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99999754 345668899999999999874 6799999999999999999999999999999999999999 999
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecC-CCC
Q 002266 159 YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRG-DHV 237 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~-~h~ 237 (945)
.+++|+.|+..++||++.+..++.+. .|.+.|+.++|.|+|.-|++|+.|++.++||++..+.+..+.. ...
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~-------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFE-------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred eEEecccccceeeeeccCcceeEeec-------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 99999999999999999999998887 4567899999999999999999999999999999888877753 234
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 238 QPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 238 ~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
.+|++++||..|++|.+|..|..+.+||.-.++.+.. .+|..+|+++..+|||..|++|+.|.+++||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 6899999999999999999999999999988877766 68999999999999999999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-34 Score=289.64 Aligned_cols=294 Identities=22% Similarity=0.336 Sum_probs=253.4
Q ss_pred cccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc----cccccccccccceEEEEEecCCCEEEEE
Q 002266 4 RSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS----NLPKILRHHRDGVTALALSPNSTCLASG 79 (945)
Q Consensus 4 ~~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~----~~~~~l~~h~~~V~~la~spdg~~Lasg 79 (945)
+.+.++.... +|.+.|+.++..+.+..++..++.|.++.+|++.... ...+.+.+|...|..+..++||++.+++
T Consensus 3 e~l~l~~tl~-gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 3 EQLVLRGTLE-GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred hhheeeeeec-CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec
Confidence 3455566666 8889999999999988777777799999999976543 3456788999999999999999999999
Q ss_pred EcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec-CCCCEEEEEEccC--
Q 002266 80 SIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG-HKGPVTGLAFDPN-- 156 (945)
Q Consensus 80 s~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~lafspd-- 156 (945)
+.|+++++||+.+++....+.+|...|.+++|++|.+.|++|+.|.+|++|++........... +.+.|.|+.|+|+
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999999999999965544433333 2789999999997
Q ss_pred CCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCC
Q 002266 157 SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236 (945)
Q Consensus 157 g~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h 236 (945)
..+|++++.|++|++||+++.+....+. +|.+.++.++++|||...++|+.||.+.+||++.++.++.+. |
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~-------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a 232 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFI-------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--A 232 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccc-------cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--C
Confidence 6799999999999999999887766654 466789999999999999999999999999999999988876 7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC----------CCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 237 VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF----------DDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 237 ~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~----------~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
...|.+++|+|+.-.|+.+. +..|+|||+.++.++..... .-...+++|+++|..|+.|..|+.|++|.
T Consensus 233 ~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred CCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 88999999999977776665 45599999999888765322 12246889999999999999999999998
Q ss_pred cC
Q 002266 307 SV 308 (945)
Q Consensus 307 ~~ 308 (945)
+.
T Consensus 312 v~ 313 (315)
T KOG0279|consen 312 VA 313 (315)
T ss_pred ee
Confidence 75
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-34 Score=300.11 Aligned_cols=252 Identities=21% Similarity=0.365 Sum_probs=221.0
Q ss_pred cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 002266 52 NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 52 ~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd 131 (945)
.+...+.+|.++|.|++|+|+|..|++|+.|.++++||+.+.....+.++|...|.|++|+|||+.||+|+.||.|.+||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeE-EEEEecCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC
Q 002266 132 TIDGSI-ARVLKGHKGPVTGLAFDP-----NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD 205 (945)
Q Consensus 132 ~~~~~~-~~~l~~h~~~V~~lafsp-----dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd 205 (945)
..+++. ...+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+. +|..+|+|++|--+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-------gHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-------GHTASVTCVRWGGE 258 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-------cCccceEEEEEcCC
Confidence 998865 467899999999999977 56799999999999999999998888776 45678888998644
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEE--------------------------------------------------------
Q 002266 206 GETLAVPGLKNDVVMYDRDTAEKL-------------------------------------------------------- 229 (945)
Q Consensus 206 g~~La~gs~dg~I~vwD~~t~~~~-------------------------------------------------------- 229 (945)
| +|++|+.|++|++|+...|...
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 3 7888888888888875432111
Q ss_pred -----------------------EeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec-cCCCCeeEEE
Q 002266 230 -----------------------FSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ-KFDDRICCMA 285 (945)
Q Consensus 230 -----------------------~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~-~~~~~V~~la 285 (945)
.... .|..-|+.+.||||++|+|+++.|..|++|+..+|+.+..+ +|-..|+.++
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 1111 26677899999999999999999999999999999999885 4899999999
Q ss_pred EecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 286 WKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 286 ~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
|+.|.++|++|+.|.++++|++.....
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeee
Confidence 999999999999999999999986553
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.8e-35 Score=307.20 Aligned_cols=283 Identities=24% Similarity=0.386 Sum_probs=254.9
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
..|..|.|.|+|+.|++++ ..|.+.+|+..+- ....++..|..+|+++.|+++|.++++|+.+|.|++|+..- ..+.
T Consensus 97 c~V~~v~WtPeGRRLltgs-~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGS-QSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK 173 (464)
T ss_pred cceeeEEEcCCCceeEeec-ccccEEEecCcee-eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence 4699999999999999997 8999999997443 44567789999999999999999999999999999999643 4455
Q ss_pred ecccCC-CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 002266 98 NITRFT-LPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176 (945)
Q Consensus 98 ~l~~~~-~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t 176 (945)
.+..|. ..|++++|+|+...++++++||+|+|||....+....+.+|...|.++.|+|...+|++++.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 555554 8999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-CCCEEEEE
Q 002266 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP-NGKYMATS 255 (945)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp-dg~~Lasg 255 (945)
+.++.++. .|...|..+.|+|++++|++++.|..+++||+++.+.++.+.+ |...|+++.|+| ...+|.+|
T Consensus 254 g~cl~tlh-------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 254 GSCLATLH-------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-HKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred cchhhhhh-------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-chhhheeeccccccccceeec
Confidence 99988775 4567889999999999999999999999999999999999987 999999999999 67789999
Q ss_pred ECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 256 SLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 256 s~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
+.||.|..|.+...+.+.. ..|...|++++|+|-|..|++|+.|.++++|.-..|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 9999999999986666655 5678999999999999999999999999999765443
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=306.17 Aligned_cols=241 Identities=25% Similarity=0.351 Sum_probs=227.0
Q ss_pred CCCCCEEEEEECCC--CCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCSILWDQQ--AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~svafspd--g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~ 92 (945)
||.+.|.++.|+|. +..|++++ .||++++|++... .....+.+|...|..++|+|+|++|+|++.|.+-++||+.+
T Consensus 215 gH~~~v~~~~fhP~~~~~~lat~s-~Dgtvklw~~~~e-~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t 292 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVDSDLNLATAS-ADGTVKLWKLSQE-TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET 292 (459)
T ss_pred ccccceeeEEEccCCCccceeeec-cCCceeeeccCCC-cchhhhhcchhhheeeeecCCCceeeecccccchhhccccc
Confidence 67799999999998 55788876 9999999998765 56788999999999999999999999999999999999999
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
+.......+|...|.+++|.+||.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..||+|+.|++++||
T Consensus 293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 293 KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred chhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~ 251 (945)
|++....+..+. .|...|+.++|+| .|.+|++++.|++++||...++.++..+.+ |.+.|.++.+++++.+
T Consensus 373 DLR~r~~ly~ip-------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 373 DLRMRSELYTIP-------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HEGKVISLDISPDSQA 444 (459)
T ss_pred eecccccceecc-------cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-CccceEEEEeccCCce
Confidence 999988876665 5567789999999 789999999999999999999999999998 9999999999999999
Q ss_pred EEEEECCCeEEEEE
Q 002266 252 MATSSLDRQILIWD 265 (945)
Q Consensus 252 Lasgs~Dg~I~IWD 265 (945)
+++++.|+++++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-33 Score=296.85 Aligned_cols=280 Identities=23% Similarity=0.422 Sum_probs=256.5
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~ 96 (945)
...|++++|+.+|..||++. .||.++||+.. +.+..++..|.++|.+|.|+.+|.||++++.|+++.+||..+|...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~-~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGS-EDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEee-cCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 46799999999999999986 99999999954 3567889999999999999999999999999999999999999999
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t 176 (945)
..+..|..+..++.|-.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.+|.|+|.|.+|++++.|++++||++..
T Consensus 312 q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 988888888788999754 5789999999999999999999999999999999999999999999999999999999888
Q ss_pred CeeeeeecccCCCCCCCCCCceEEEEcCCC---------CEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC
Q 002266 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDG---------ETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP 247 (945)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~i~~l~~spdg---------~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp 247 (945)
....+.+. .|...|..+.|+|.| ..+++++.|++|++||...+.+++.|.. |..+|.+++|||
T Consensus 391 ~~~~~~l~-------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~~pVysvafS~ 462 (524)
T KOG0273|consen 391 SNSVHDLQ-------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQEPVYSVAFSP 462 (524)
T ss_pred Ccchhhhh-------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CCCceEEEEecC
Confidence 77666665 445667888888864 4688999999999999999999999987 999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 248 NGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
+|+|+|+|+.||.|.||++.+++++......+.|..++|+..|..|..+-.||.+.+-|+.
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999998888899999999999999999999999998864
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.6e-31 Score=285.55 Aligned_cols=282 Identities=28% Similarity=0.504 Sum_probs=251.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
+|...|++++|+|++++|++++ .+|.|++|+.... .....+..|...+..+.|++++++|++++.+|.|++|++.+++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGS-GDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEee-cCcEEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 5669999999999999999987 8999999998765 3456677888999999999999999999999999999999887
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
....+..+...+.++.|++++.++++++.++.|.+||+.+++....+..|...|.+++|+|++.++++++.+|.|++||+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 77888888889999999999888888888999999999988888888899999999999999999998888999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMAT 254 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Las 254 (945)
++++.+..+. .+...+.+++|+|+++.+++++.++.|++||+..++.+..+.. |...+.+++|+|++.++++
T Consensus 165 ~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 165 RTGKCVATLT-------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred cccccceeEe-------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-cCCceEEEEEcCCCcEEEE
Confidence 8877766654 3345789999999999999999999999999999888877755 7789999999999999999
Q ss_pred EECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 255 SSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 255 gs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
++.||.|++|++.++..... ..|...|.+++|+|+++.|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98899999999998777665 45677899999999999999999999999996
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-32 Score=283.43 Aligned_cols=287 Identities=21% Similarity=0.351 Sum_probs=260.7
Q ss_pred cccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEE
Q 002266 10 EAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYK 89 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwd 89 (945)
.... ||..+|+.+-|+|+-..+++++ .|++|++||..++ ++...+++|.+.|..|+|+..|++|++++.|-.+++||
T Consensus 102 ~~l~-g~r~~vt~v~~hp~~~~v~~as-~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 102 QKLA-GHRSSVTRVIFHPSEALVVSAS-EDATIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhh-ccccceeeeeeccCceEEEEec-CCceEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 3344 7889999999999999888886 9999999999988 55888999999999999999999999999998899999
Q ss_pred cCC-CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCc
Q 002266 90 FPG-GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGT 168 (945)
Q Consensus 90 l~~-g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~ 168 (945)
+.+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-++.++.+|...|..+..+.||.++++++.|.+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 876 4566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCcEEEeec
Q 002266 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD---------------GETLAVPGLKNDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 169 I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd---------------g~~La~gs~dg~I~vwD~~t~~~~~~~~ 233 (945)
|++|-+.++++...+. .|..++-+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 259 l~vW~~~t~~~k~~lR-------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELR-------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred EEEEEeccchhhhhhh-------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 9999999886554443 34566777887652 3589999999999999999999999999
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 234 GDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 234 ~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
+ |...|..++|+|.|+||+++..|++++|||+.++++... ..|...|+++.|+.+..++++|+-|..+++|+.
T Consensus 332 g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 332 G-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred c-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 8 999999999999999999999999999999999988877 567889999999999999999999999999974
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-31 Score=264.00 Aligned_cols=272 Identities=22% Similarity=0.336 Sum_probs=234.4
Q ss_pred EEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe--eeeecccCCCCEEE
Q 002266 31 HLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE--FQTNITRFTLPIRV 108 (945)
Q Consensus 31 ~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~--~~~~l~~~~~~V~~ 108 (945)
+|+++ +.|.+|++|...++ .+..++....+.|..+...|+++.||+++. ..|++||+.++. .+..+.+|+..|..
T Consensus 12 iLvsA-~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSA-GYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEec-cCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 34555 49999999999887 667778777889999999999999999876 579999998765 46788899999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCC
Q 002266 109 LAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAP 188 (945)
Q Consensus 109 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~ 188 (945)
+.|..+|+++++|++||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+.+.+..
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--- 164 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--- 164 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---
Confidence 9999999999999999999999999966655555 779999999999999999999999999999988766554431
Q ss_pred CCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc------EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 002266 189 DIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE------KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQIL 262 (945)
Q Consensus 189 ~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~------~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~ 262 (945)
.....+.++...|||.+++.+...|..++|++-+.. ++..+.. |.+.+..+.+||+++|||+++.|.+++
T Consensus 165 ---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 165 ---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred ---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEE
Confidence 234678999999999999999999999999986543 4555555 899999999999999999999999999
Q ss_pred EEECCCCeee--eeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 263 IWDVGKKLDI--DRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 263 IWD~~~~~~i--~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
||++++.... ....|..-++..+||.+|++|++++.|+.+++|++..++..
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 9999987222 22567788999999999999999999999999999887754
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.5e-31 Score=305.19 Aligned_cols=284 Identities=25% Similarity=0.427 Sum_probs=251.2
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEc-CCCe
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPS-NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKF-PGGE 94 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl-~~g~ 94 (945)
...|+++.|+++|+++++++ .++.+++|+..... .....+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAAS-SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEcc-CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 68899999999999988876 89999999985553 245566889999999999999999999999999999999 5568
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
.+..+.+|...|++++|+|+|+++++|+.|++|+|||++++++...+.+|.+.|++++|++++.+|++++.||.|+|||+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCee--eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC---CeEEEEEcCCC
Q 002266 175 QSGRE--LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ---PICFLSWSPNG 249 (945)
Q Consensus 175 ~t~~~--i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~---~I~~l~fSpdg 249 (945)
.++.. ...+.... ... .+++++|+|++.+|++++.|+.+++||+..+..+..+.+ |.. .+.+...++.|
T Consensus 318 ~~~~~~~~~~~~~~~----~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAE----NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG-HSNLVRCIFSPTLSTGG 391 (456)
T ss_pred CCCceeeeecccCCC----CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc-cCCcceeEecccccCCC
Confidence 99984 34443211 112 689999999999999999999999999999999888887 444 34455567899
Q ss_pred CEEEEEECCCeEEEEECCCCeeeee-ccC-CCCeeEEEEecCCCEEEEEE--cCCeEEEEec
Q 002266 250 KYMATSSLDRQILIWDVGKKLDIDR-QKF-DDRICCMAWKPIGNALAVID--VMGKYGVWES 307 (945)
Q Consensus 250 ~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~-~~~V~~la~spdg~~Las~s--~DG~I~iWd~ 307 (945)
.++++|+.|+.|++||+.++..+.. ..| ...+..++|+|..+++++++ .|+.+++|..
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 9999999999999999998777766 556 68899999999999999988 7899999975
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-31 Score=305.69 Aligned_cols=273 Identities=19% Similarity=0.307 Sum_probs=236.1
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
..|+|+.|++|++.||.+. .|..|++|.+... . ...+++ .++- ..+=+.+.|-.+.+.|..++....
T Consensus 379 ~~v~ca~fSddssmlA~Gf-~dS~i~~~Sl~p~-k-l~~lk~-------~~~l---~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGF-VDSSVRVWSLTPK-K-LKKLKD-------ASDL---SNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcceeEeecCCcchhhccc-cccEEEEEecchh-h-hccccc-------hhhh---ccccccccchhhhhccccCCceeE
Confidence 5699999999999777664 8999999987543 1 222221 1111 122233445556777777777777
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG 177 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~ 177 (945)
.+.+|.++|..+.|+|+.++|++++.|++|++|.+.+...+..+++|..+|+++.|+|.|-|+|+++.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC
Q 002266 178 RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL 257 (945)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~ 257 (945)
...+.+. +|.+.+.|+.|||+..|+++|+.|.+|++||..+|..++.|.+ |.++|++++|||+|++|++|+.
T Consensus 526 ~PlRifa-------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 526 KPLRIFA-------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred Cchhhhc-------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeeccc
Confidence 7766665 4567789999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 258 DRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 258 Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
||.|.|||+.++..+.. .+|.+.|+++.|+.+|..||+|+.|.+|++||+....
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999887766 7789999999999999999999999999999986543
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-30 Score=272.05 Aligned_cols=289 Identities=18% Similarity=0.251 Sum_probs=249.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
.|...|.+|+.+|+.++++|+| .|..-.||+..++. ....+.+|+..|+++.|+.+|.+||||..+|.|+||...++.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGG-gDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGG-GDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred hcCCceEEEEeCCCCceEEecC-CCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 5669999999999888777776 88899999998874 677889999999999999999999999999999999999998
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
....+...-..+.-+.|+|.+..|++|+.||.+.+|.+.+....+.+.+|..++++=.|.|+|+.++++..||+|++|++
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 88888766778889999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCCeeeeeecccC------CCCC--------------------------------------CCCCCceEEE---EcCCCC
Q 002266 175 QSGRELHNLKRVA------PDIG--------------------------------------SDPSSMNVLS---WSPDGE 207 (945)
Q Consensus 175 ~t~~~i~~~~~~~------~~~~--------------------------------------~~~~~i~~l~---~spdg~ 207 (945)
.++++++.+.... .... .+...+.++. |+..=.
T Consensus 220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 9998887775211 0000 0001112222 333345
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEE
Q 002266 208 TLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAW 286 (945)
Q Consensus 208 ~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~ 286 (945)
+.|+|+.||+|.|||+...+..+.+. |..+|+.+.|-+ ..+|++++.+|.|++||.++|.+... .+|...|.+++.
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 67889999999999999887766665 888999999999 78999999999999999999999887 689999999999
Q ss_pred ecCCCEEEEEEcCCeEEEEecC
Q 002266 287 KPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 287 spdg~~Las~s~DG~I~iWd~~ 308 (945)
+|+++++++++.|++.+||++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999864
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=6.4e-31 Score=273.44 Aligned_cols=283 Identities=20% Similarity=0.289 Sum_probs=257.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.+.|.|+++.|...++++++ .|+++.|||+.++ .+..++.+|...|..+++++...||++++.|+.|+.||+...+
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs-~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGS-ADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred hccceEEEEeeCCCceeEEecC-CCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 6669999999999999999886 9999999999998 6778899999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|.++.+.|-...+++|+.|++|++||+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMAT 254 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Las 254 (945)
+.++....+. .|...+.+++.+|....+++++.| .|+-|++..+..+..+.+ |..-|.+++...|| ++++
T Consensus 307 ~agkt~~tlt-------~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsg-h~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 307 RAGKTMITLT-------HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSG-HNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ccCceeEeee-------cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccc-ccceeeeeeeccCc-eEEE
Confidence 9998877765 456778999999999999998755 799999999998888776 99999999988776 7889
Q ss_pred EECCCeEEEEECCCCeeeeec---------cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 255 SSLDRQILIWDVGKKLDIDRQ---------KFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 255 gs~Dg~I~IWD~~~~~~i~~~---------~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
|+.+|.|.+||.+++-..+.. .....|++.+|...|..|++|..|.+|.+|.-..
T Consensus 377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 999999999999987655442 2346789999999999999999999999997543
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.8e-30 Score=280.58 Aligned_cols=304 Identities=21% Similarity=0.314 Sum_probs=249.9
Q ss_pred cccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccc---ccccceEEEEEecCCCEEEEEE
Q 002266 4 RSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILR---HHRDGVTALALSPNSTCLASGS 80 (945)
Q Consensus 4 ~~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~---~h~~~V~~la~spdg~~Lasgs 80 (945)
.-+++...++ .|+.-|.|+.|+|||.+++++| .||+|.|||-.++.. ...+. +|.+.|.+|+|+||+..|++++
T Consensus 178 PPFKFk~s~r-~HskFV~~VRysPDG~~Fat~g-sDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 178 PPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAG-SDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred CCeeeeeccc-ccccceeeEEECCCCCeEEEec-CCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEEEec
Confidence 3456666777 8999999999999999999998 999999999888753 34444 8999999999999999999999
Q ss_pred cCCcEEEEEcCCCeeeeecccCCC---CEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCC
Q 002266 81 IDHSVKLYKFPGGEFQTNITRFTL---PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNS 157 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~~~~~l~~~~~---~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg 157 (945)
.|.+++|||+.+.+++.++..... .-..+.|. ...|++.+.+|.|.+++.........+.+|...|++++.+|++
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 999999999999988887764322 23344564 5689999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeeee-----------eecccC------------------------C----CCCCC-----
Q 002266 158 EYLASIDSIGTVIYWELQSGRELH-----------NLKRVA------------------------P----DIGSD----- 193 (945)
Q Consensus 158 ~~Las~s~Dg~I~iwDl~t~~~i~-----------~~~~~~------------------------~----~~~~~----- 193 (945)
++|++|+.||.|.-|+..++..-+ .+.... . .+...
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 999999999999999987653211 110000 0 00000
Q ss_pred ------------------------------CCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEe-ecCCCCCCeEE
Q 002266 194 ------------------------------PSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS-LRGDHVQPICF 242 (945)
Q Consensus 194 ------------------------------~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~-~~~~h~~~I~~ 242 (945)
.....+++++|++..+++|+.|+.|+||.+........ ....|.++|++
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 02245788999999999999999999999987553222 22348999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeeee-c-cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 243 LSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-Q-KFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~-~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
++||||+.|||+|...+.+.+||+.+++.... . -|...|.+++|+|+..+||+|+.|-.|.||++..|..
T Consensus 493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 99999999999999999999999999877433 3 3789999999999999999999999999999988765
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=7.1e-30 Score=257.93 Aligned_cols=283 Identities=19% Similarity=0.304 Sum_probs=236.4
Q ss_pred cccccCCCCCEEEEEECCC-CCEEEEEEcCCCeEEEEcCCCCc--cccccc-cccccceEEEEEecCCCEEEEEEcCCcE
Q 002266 10 EAHKCGNAASFCSILWDQQ-AHHLVTASSSETTISIHDPLLPS--NLPKIL-RHHRDGVTALALSPNSTCLASGSIDHSV 85 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspd-g~~L~t~g~~dg~V~IWd~~~~~--~~~~~l-~~h~~~V~~la~spdg~~Lasgs~Dg~V 85 (945)
..+. +|.++|..++|+|- |..|+++| .|..|+||+...+. .+...+ .+|+..|++++|+|.|++|++|+.|.++
T Consensus 8 ~~~~-gh~~r~W~~awhp~~g~ilAscg-~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 8 QKLS-GHKDRVWSVAWHPGKGVILASCG-TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred Eeec-CCCCcEEEEEeccCCceEEEeec-CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 3445 67789999999999 88788776 99999999976421 122222 4699999999999999999999999999
Q ss_pred EEEEcCCC--eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC---eEEEEEecCCCCEEEEEEccCCCEE
Q 002266 86 KLYKFPGG--EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG---SIARVLKGHKGPVTGLAFDPNSEYL 160 (945)
Q Consensus 86 ~iwdl~~g--~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~---~~~~~l~~h~~~V~~lafspdg~~L 160 (945)
.||.-..+ +++..+.+|...|.+++|+++|.+||+++.|..|.||.+..+ .+...+..|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986544 567889999999999999999999999999999999998743 5778899999999999999999999
Q ss_pred EEEeCCCcEEEEEccCC---eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCC
Q 002266 161 ASIDSIGTVIYWELQSG---RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHV 237 (945)
Q Consensus 161 as~s~Dg~I~iwDl~t~---~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~ 237 (945)
++++.|.+|++|+-..+ .+..++. .+...+.+++|++.|..|++++.|++|+||-.. ..+...|.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~-------g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~s 233 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLD-------GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHS 233 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEec-------CccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcc
Confidence 99999999999987632 3455554 445689999999999999999999999999866 33444577
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe------eee--eccCCCCeeEEEEecC-CCEEEEEEcCCeEEEEecC
Q 002266 238 QPICFLSWSPNGKYMATSSLDRQILIWDVGKKL------DID--RQKFDDRICCMAWKPI-GNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 238 ~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~------~i~--~~~~~~~V~~la~spd-g~~Las~s~DG~I~iWd~~ 308 (945)
..+..+.|. ...||+++.|+.|+||.-.... ++. ...|...|++++|.|. .++|++++.||.|++|.+.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 899999998 4589999999999999765421 111 1347778999999995 6799999999999999874
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4e-30 Score=288.97 Aligned_cols=284 Identities=20% Similarity=0.347 Sum_probs=256.3
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC-CcEEEEEcCCCeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID-HSVKLYKFPGGEFQ 96 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D-g~V~iwdl~~g~~~ 96 (945)
..|+|.+|++....|+++- ..|...+|.+..- .+.+.+.-...+|..++|+..|.+||.|+.. |++-||++.+...+
T Consensus 266 ~kvtaa~fH~~t~~lvvgF-ssG~f~LyelP~f-~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGF-SSGEFGLYELPDF-NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred cceeeeeccCCceEEEEEe-cCCeeEEEecCCc-eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence 7899999999988888875 8899999997654 5566666667899999999999999998764 89999999999988
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t 176 (945)
....+|...+.+++++|||.++|+|++||.|+|||...+-+..++..|+..|+.+.|+..|+.+++++-||+|+.||+..
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEE
Q 002266 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN-DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS 255 (945)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg-~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasg 255 (945)
.+..+++..+. +-...|++..|.|..+++|+.|. .|.+|++.+|+.+-.+.+ |+++|.+++|+|.|..||++
T Consensus 424 YrNfRTft~P~------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 424 YRNFRTFTSPE------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred cceeeeecCCC------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCeEEec
Confidence 99888887643 23457899999999999999887 699999999999998888 99999999999999999999
Q ss_pred ECCCeEEEEECCC-CeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 256 SLDRQILIWDVGK-KLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 256 s~Dg~I~IWD~~~-~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
+.|.+|++||+-. ...+....+...+..++|+|+|+.|++++.||.|.+||....
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred cccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 9999999999844 445566777889999999999999999999999999998643
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=1.9e-30 Score=265.38 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=247.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.+.|+.+.|+|+|.+|+++| .|..|.+|++....+-...+++|.++|..+.|.+|++.|++++.|.+|+.||..+|+
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG-~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGG-SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCcceEEEEEECCCCCeEeecC-CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 6779999999999999999997 999999999876666677888999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
....+..|..-|..+.-+.-| .++.++++|+++++||+++...++++. .+.+++++.|...+..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999999999999988855444 456778899999999999888887775 457899999999999999999999999999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEeecC-CC--CCCeEEEEEc
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE----KLFSLRG-DH--VQPICFLSWS 246 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~----~~~~~~~-~h--~~~I~~l~fS 246 (945)
++.....+.+. +|..+|+.+..+|+|.++.+-+.|.++++||++-+. ++..+.+ .| ......++||
T Consensus 203 ~r~~d~~~~ls-------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 203 LRKNDGLYTLS-------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred cccCcceEEee-------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99998888776 456889999999999999999999999999998543 3555544 12 2345667899
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 247 PNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 247 pdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iW 305 (945)
|+++++.+|+.|..+++||......+.. .+|.+.|.+++|+|....|.+++.|.+|++=
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 9999999999999999999988666555 7899999999999999999999999998864
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=1.9e-30 Score=278.74 Aligned_cols=291 Identities=23% Similarity=0.409 Sum_probs=252.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-c--cccccc----------ccccceEEEEEecCCCEEEEEEc
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS-N--LPKILR----------HHRDGVTALALSPNSTCLASGSI 81 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-~--~~~~l~----------~h~~~V~~la~spdg~~Lasgs~ 81 (945)
+|...|++++|+|-..-+++.|+.+.+.++|++.... . ....++ .....|++++|+.+|.+||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3558999999999888555555589999999976411 1 111111 12357999999999999999999
Q ss_pred CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEE
Q 002266 82 DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLA 161 (945)
Q Consensus 82 Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~La 161 (945)
||.+++|+. +|.....+..|.+||.++.|+..|++|++++.|+++.+||..++...+.+.-|..+-..+.|-.+ ..++
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFA 333 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEe
Confidence 999999996 56778899999999999999999999999999999999999999999999989888788899754 4688
Q ss_pred EEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeE
Q 002266 162 SIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPIC 241 (945)
Q Consensus 162 s~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~ 241 (945)
+++.||.|+|+-+....++.++. +|...|+++.|.|.|.+|++++.|++++||.+........+.. |...|.
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~-------GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~-Hskei~ 405 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFI-------GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA-HSKEIY 405 (524)
T ss_pred ecCCCceEEEEEecCCCcceeee-------cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh-hcccee
Confidence 99999999999998887777765 4678899999999999999999999999999998888888887 999999
Q ss_pred EEEEcCCC---------CEEEEEECCCeEEEEECCCCeeeeec-cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 242 FLSWSPNG---------KYMATSSLDRQILIWDVGKKLDIDRQ-KFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 242 ~l~fSpdg---------~~Lasgs~Dg~I~IWD~~~~~~i~~~-~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
.+.|+|.| ..+++++.|++|++||+..+.++..+ +|..+|.+++|+|+|++||+|+.||.|.+|+.....
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 99999964 47899999999999999999999985 899999999999999999999999999999998777
Q ss_pred CCCC
Q 002266 312 SMKS 315 (945)
Q Consensus 312 ~~~~ 315 (945)
..+.
T Consensus 486 l~~s 489 (524)
T KOG0273|consen 486 LVKS 489 (524)
T ss_pred eeEe
Confidence 5543
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1e-31 Score=289.83 Aligned_cols=283 Identities=18% Similarity=0.358 Sum_probs=246.1
Q ss_pred CCCCCEEEEEECC-CCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC
Q 002266 15 GNAASFCSILWDQ-QAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 15 gh~~~V~svafsp-dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g 93 (945)
||...|+++.|.| .+.+|+++ +.|+.|+||++.....+.+++.+|..+|.+++|+++|..|++++.|+.|++||+++|
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~-gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSG-GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred CCccccchhhhccceeeEEEec-CCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 7889999999999 55555555 599999999998877889999999999999999999999999999999999999999
Q ss_pred eeeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 94 EFQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 94 ~~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
++...+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++++.|+.++||
T Consensus 291 ~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 291 QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 9988776 46678999999988 899999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEeecCCCC--CCeEEEEEcC
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE---KLFSLRGDHV--QPICFLSWSP 247 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~---~~~~~~~~h~--~~I~~l~fSp 247 (945)
+.+....+..+... ......++..+|+++++++-+.++.|.+|.+...- ....+.+ |. +.-..+.|||
T Consensus 370 e~~~~v~ik~i~~~------~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSp 442 (503)
T KOG0282|consen 370 ENRIPVPIKNIADP------EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSP 442 (503)
T ss_pred EcCCCccchhhcch------hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcC
Confidence 99887665544321 22345679999999999999999999999865322 2233444 43 4566789999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCC-CEEEEEEcCCeEEEEe
Q 002266 248 NGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIG-NALAVIDVMGKYGVWE 306 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg-~~Las~s~DG~I~iWd 306 (945)
||++|++|+.||.+.+||.++-+++.. ..|...+..+.|+|.. ..+|+|+.+|.|++|+
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999888877 4577899999999975 4799999999999996
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=255.42 Aligned_cols=265 Identities=18% Similarity=0.290 Sum_probs=226.6
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc-ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN-LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~-~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
.+.|+.+...|+++.|+++| ...|++||+.+... ...++.+|...|+++.|..+|+++++|++||+++|||++...+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~--~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAG--NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred ccceeeEEEcCCcchhhhcc--CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 45699999999999999987 67899999988764 6678899999999999999999999999999999999998665
Q ss_pred eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK-GHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~-~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
.+.+ .+..+|.++..+|+...|++|..+|.|++||+....+...+. ....+|.++...|+|.+|+.+...|..++|++
T Consensus 118 qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 118 QRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred chhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 5444 577999999999999999999999999999998876655543 34578999999999999999999999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA-EKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~-~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
-.......+.. ..++..|...+..+.+||++++|++++.|.+++||+.++. +....+.+ |...+..++||.+|+||+
T Consensus 197 ~~~~~~s~l~P-~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 197 LNHQTASELEP-VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQRWVWDCAFSADGEYLV 274 (311)
T ss_pred cCCCccccceE-hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-CCceEEeeeeccCccEEE
Confidence 87654444332 2345577888999999999999999999999999999988 44455555 888999999999999999
Q ss_pred EEECCCeEEEEECCCCeeeee-ccCCCCeeEEEE
Q 002266 254 TSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAW 286 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~ 286 (945)
+|+.|+.+++|++..++.+.. .+|.....|++.
T Consensus 275 Tassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 999999999999999987766 456555555554
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.8e-29 Score=311.32 Aligned_cols=283 Identities=17% Similarity=0.303 Sum_probs=236.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc---c---ccccccccccceEEEEEec-CCCEEEEEEcCCcEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS---N---LPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKL 87 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~---~---~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~i 87 (945)
.|.+.|++++|+|+|++|+++| .|+.|+||+..... . .+.....+...|.+++|++ ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg-~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAG-VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 4779999999999999999987 99999999975311 0 0111122356799999988 5789999999999999
Q ss_pred EEcCCCeeeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEc-cCCCEEEEEeC
Q 002266 88 YKFPGGEFQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFD-PNSEYLASIDS 165 (945)
Q Consensus 88 wdl~~g~~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafs-pdg~~Las~s~ 165 (945)
||+.+++.+..+..|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 99999998889999999999999997 7899999999999999999999888888754 689999995 57899999999
Q ss_pred CCcEEEEEccCCee-eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCC------CcEEEeecCCCCC
Q 002266 166 IGTVIYWELQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT------AEKLFSLRGDHVQ 238 (945)
Q Consensus 166 Dg~I~iwDl~t~~~-i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t------~~~~~~~~~~h~~ 238 (945)
||.|++||+++... +..+. .|...|.++.|. ++.+|++++.|+.|++||+.. +..+..+.+ |..
T Consensus 639 dg~I~iwD~~~~~~~~~~~~-------~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~~ 709 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMI-------GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG-HTN 709 (793)
T ss_pred CCeEEEEECCCCCccceEec-------CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC-CCC
Confidence 99999999987642 33332 456788999997 788999999999999999974 356677776 888
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee--------------ccCCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 002266 239 PICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR--------------QKFDDRICCMAWKPIGNALAVIDVMGKYGV 304 (945)
Q Consensus 239 ~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~--------------~~~~~~V~~la~spdg~~Las~s~DG~I~i 304 (945)
.+..++|+|++.+|++|+.|+.|+||+......+.. ..+...|.+++|+|++..|++|+.+|.|+|
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 999999999999999999999999999876543321 123456999999999999999999999999
Q ss_pred EecC
Q 002266 305 WESV 308 (945)
Q Consensus 305 Wd~~ 308 (945)
|++.
T Consensus 790 ~~~~ 793 (793)
T PLN00181 790 LEMV 793 (793)
T ss_pred EecC
Confidence 9873
No 25
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.8e-27 Score=272.24 Aligned_cols=243 Identities=17% Similarity=0.251 Sum_probs=206.2
Q ss_pred cccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC-eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 002266 58 RHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG-EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS 136 (945)
Q Consensus 58 ~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g-~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~ 136 (945)
..|..+.+.|+|.|+|.+|++++.||.|++|+.... +....+..+...|.+++. ++.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368888999999999999999999999999997665 444455546677777765 45699999999999999998887
Q ss_pred EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC
Q 002266 137 IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN 216 (945)
Q Consensus 137 ~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg 216 (945)
.-..+....-++++++|+.+|+++|.|+.|-.|++.++........+. +|..+|.++.|+|.+++||+.+.||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-------gh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-------GHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-------ccCCceeeeeEcCCCCEEEEEecCc
Confidence 665666667899999999999999999999999999998887766665 5678899999999999999999999
Q ss_pred eEEEEECCCCcEEEeecCC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec---cCCCCeeEEEE
Q 002266 217 DVVMYDRDTAEKLFSLRGD-------HVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ---KFDDRICCMAW 286 (945)
Q Consensus 217 ~I~vwD~~t~~~~~~~~~~-------h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~---~~~~~V~~la~ 286 (945)
.|++||+.++....++.+- ....++.++|+|+|..|+..+.|+.|.+|+..+....... .+...++.+.|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 9999999998876665431 1345678999999888888888999999999998877653 23445999999
Q ss_pred ecCCCEEEEEEcCCeEEEEecCC
Q 002266 287 KPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 287 spdg~~Las~s~DG~I~iWd~~~ 309 (945)
+|.|++||+++.+|.|.|||...
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999874
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=257.50 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=229.3
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI 133 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~ 133 (945)
.+++++|.+.|.++.|++|+++|++++.||.+.|||.-+......+.-....|..++|+|.|+++|+|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 46899999999999999999999999999999999998888788888778899999999999999999999999999998
Q ss_pred CC------eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-CC
Q 002266 134 DG------SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DG 206 (945)
Q Consensus 134 ~~------~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg 206 (945)
+. ...+.+.+|.+.+.|+.|-+ ...|++++.|.++.+||+++++.+..+. +|.+.|.++.++| ++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-------GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-------GHTGDVMSLSLSPSDG 199 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-------CCcccEEEEecCCCCC
Confidence 54 35567899999999999987 4578999999999999999999988886 4567899999999 99
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC---CCCeeE
Q 002266 207 ETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF---DDRICC 283 (945)
Q Consensus 207 ~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~---~~~V~~ 283 (945)
+.+++|+-|+..++||++.+..+++|.+ |...|++++|.|+|.-+++|+.|++.++||++....+..+.+ ..+|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee
Confidence 9999999999999999999999999998 999999999999999999999999999999999888877665 367999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 284 MAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 284 la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
++|+..|++|++|..|.++.+||..-++.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccce
Confidence 99999999999999999999999875553
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-29 Score=255.84 Aligned_cols=252 Identities=19% Similarity=0.295 Sum_probs=225.4
Q ss_pred ccccccccccceEEEEEecC-CCEEEEEEcCCcEEEEEcCC-----CeeeeecccCCCCEEEEEEecCCCEEEEEECCCc
Q 002266 53 LPKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPG-----GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEG 126 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~~-----g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~ 126 (945)
+..++.+|.+.|+.++..+. ...|++++.|.++.+|++.. |..++.+.+|...|..+..+++|++.++++.|+.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 34578899999999999986 57889999999999999753 5667889999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-
Q 002266 127 IKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD- 205 (945)
Q Consensus 127 I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd- 205 (945)
+++||+.+++..+.|.+|...|.+++|++|++.+++|+.|.+|.+|++....... +... .+...|+|++|+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t-~~~~-----~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT-IHED-----SHREWVSCVRFSPNE 160 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE-EecC-----CCcCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999986654433 3211 22578999999997
Q ss_pred -CCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEE
Q 002266 206 -GETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCM 284 (945)
Q Consensus 206 -g~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~l 284 (945)
..+|+.++.|++|++||+++.+....+.+ |.+.++.+++||||.++++|+.||.+.+||++.++.+....+...|.++
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl 239 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL 239 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE
Confidence 78999999999999999999998888887 9999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 285 AWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 285 a~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
+|+|....|+.+...+ |+|||+.....
T Consensus 240 ~fspnrywL~~at~~s-IkIwdl~~~~~ 266 (315)
T KOG0279|consen 240 CFSPNRYWLCAATATS-IKIWDLESKAV 266 (315)
T ss_pred EecCCceeEeeccCCc-eEEEeccchhh
Confidence 9999987777765555 99999876654
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.8e-29 Score=281.17 Aligned_cols=286 Identities=19% Similarity=0.277 Sum_probs=250.7
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
..|..++|+..|.+|+.+|+.-|.+.||+..+.. ......+|...+++++++|||+++|+|+.||.|+|||..+|-+..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc-eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 5689999999999999999888999999988763 344567899999999999999999999999999999999999999
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC-CCCEEEEEEccCCCEEEEEeCCC-cEEEEEcc
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH-KGPVTGLAFDPNSEYLASIDSIG-TVIYWELQ 175 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h-~~~V~~lafspdg~~Las~s~Dg-~I~iwDl~ 175 (945)
++..|+..|+.+.|+..|+.+++.+-||+|+.||+......+++... .....|++.+|.|..+.+|+.|. .|.+|++.
T Consensus 387 TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 99999999999999999999999999999999999999988888753 34578999999999999998887 69999999
Q ss_pred CCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcCCCCEEEE
Q 002266 176 SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSPNGKYMAT 254 (945)
Q Consensus 176 t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSpdg~~Las 254 (945)
+|+.+-.+. +|.++|.+++|+|.|..|++++.|.+|++||+-... .+.++. +...+..++|+|+|+-||+
T Consensus 467 TGqllDiLs-------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 467 TGQLLDILS-------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE--IRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred cCeeeehhc-------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe--eccceeEEEEcCCCCeEEE
Confidence 999887765 577999999999999999999999999999986543 344444 5678999999999999999
Q ss_pred EECCCeEEEEECCCCeeeeec---------------------cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 255 SSLDRQILIWDVGKKLDIDRQ---------------------KFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 255 gs~Dg~I~IWD~~~~~~i~~~---------------------~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
++.||.|.+||...+..+..+ ......+.+++++||..|++|+....|.+|++...-.+
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 999999999998765544221 11356899999999999999999999999998765544
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.4e-30 Score=270.22 Aligned_cols=284 Identities=18% Similarity=0.280 Sum_probs=241.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc--cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS--NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~ 92 (945)
.|.+.|+-+.||++|++||+++ .|.+..||++.... .+..++.+|..+|..+.||||.++|++|+.+..+.+||+.+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaS-kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASAS-KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeecc-CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 5679999999999999999997 99999999876543 34677889999999999999999999999999999999999
Q ss_pred Ceeeeeccc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCC-CCEEEEEEccCCCEEEEEeCCCcEE
Q 002266 93 GEFQTNITR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHK-GPVTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 93 g~~~~~l~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~-~~V~~lafspdg~~Las~s~Dg~I~ 170 (945)
|.....+.. +...+.+++|.|||..+++|+.|+.|..||+. |.....+++-. ..|.+++..+||+++++.+.|..|+
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 997766653 35689999999999999999999999999984 44455555433 4599999999999999999999999
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC--CeEEEEEcC-
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ--PICFLSWSP- 247 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~--~I~~l~fSp- 247 (945)
+|+..+......+ ....++++++.|.+|+++++.-.+..|++||+..+..+..+.+ |.. -|..-||.-
T Consensus 380 l~~~e~~~dr~li--------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~G-hkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 380 LYNREARVDRGLI--------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFG-HKQGHFIIRSCFGGG 450 (519)
T ss_pred eechhhhhhhccc--------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhc-ccccceEEEeccCCC
Confidence 9998776544322 2346789999999999999999999999999998888888877 544 344556654
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCC-EEEEEEcCCeEEEEecCC
Q 002266 248 NGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGN-ALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~-~Las~s~DG~I~iWd~~~ 309 (945)
+..++++|+.|+.|+||+..+++++.. .+|...|.+++|+|... ++|+++.||+|+||.+..
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 558999999999999999999999887 67899999999999664 799999999999997653
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-29 Score=275.87 Aligned_cols=290 Identities=19% Similarity=0.256 Sum_probs=258.4
Q ss_pred CCccccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE
Q 002266 1 MKVRSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS 80 (945)
Q Consensus 1 Mk~~~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs 80 (945)
|+.+..+.... |+.+|-++.|+|...+++++- .+|.|.||+.++. ...+.+.-...+|++..|-+..+++++|+
T Consensus 1 ~~l~~krk~~~----rSdRVKsVd~HPtePw~la~L-ynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 1 MKLDFKRKFQS----RSDRVKSVDFHPTEPWILAAL-YNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred CcchhhhHhhc----cCCceeeeecCCCCceEEEee-ecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEec
Confidence 34444444444 448999999999999999885 8999999998876 45667777788999999999999999999
Q ss_pred cCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-eEEEEEecCCCCEEEEEEcc-CCC
Q 002266 81 IDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG-SIARVLKGHKGPVTGLAFDP-NSE 158 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~~~~~l~~h~~~V~~lafsp-dg~ 158 (945)
.|..|+||+..+++.+..+..|..-|++++.+|...+++++++|..|++||.+.+ .+.+++.+|...|.+++|+| |.+
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999999999999864 67889999999999999999 667
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEeecCCC
Q 002266 159 YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG--ETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg--~~La~gs~dg~I~vwD~~t~~~~~~~~~~h 236 (945)
.+++++-|++|+||.+.+..+..++. +|...|+|+++-+.| .+|++|+.|..|+|||..+..++.++.+ |
T Consensus 155 tFaS~sLDrTVKVWslgs~~~nfTl~-------gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG-H 226 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHPNFTLE-------GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG-H 226 (794)
T ss_pred ceeeeeccccEEEEEcCCCCCceeee-------ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc-c
Confidence 99999999999999999888888776 456789999998844 6999999999999999999999999998 9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 002266 237 VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF-DDRICCMAWKPIGNALAVIDVMGKYGV 304 (945)
Q Consensus 237 ~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~~~V~~la~spdg~~Las~s~DG~I~i 304 (945)
...|..++|+|.-.++++|+.||+++||+..+-+....... -++++|++-.+.++.+++|...|.|.+
T Consensus 227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999999999998877766544 478999999999989999988887654
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.9e-30 Score=273.13 Aligned_cols=243 Identities=21% Similarity=0.398 Sum_probs=221.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
.|...|+++.|+++|.+++++. .+|.|++|+..-. .+......|...|++++|+|+...|++|+.||+|+|||....+
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD-~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGD-KGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred hhcccceeEEEccCCCEEEEcC-CCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence 4559999999999999999985 9999999997543 3333444556999999999999999999999999999999888
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
....+.+|...|.++.|+|...+|++|+.|..|++||.+++.++.++.+|+..|..+.|+|++++|++++.|..++++|+
T Consensus 214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di 293 (464)
T KOG0284|consen 214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI 293 (464)
T ss_pred hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEeh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
++.+.+..+. .|...++++.|+| ...+|.+|+.||.|..|.+...+++..+...|...|.+++|+|=|.+|+
T Consensus 294 R~mkEl~~~r-------~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 294 RTMKELFTYR-------GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred hHhHHHHHhh-------cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEe
Confidence 9877777665 4567789999999 6778899999999999999988888888888999999999999999999
Q ss_pred EEECCCeEEEEEC
Q 002266 254 TSSLDRQILIWDV 266 (945)
Q Consensus 254 sgs~Dg~I~IWD~ 266 (945)
+|+.|.++++|.-
T Consensus 367 tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 367 TGSNDRTVRFWTR 379 (464)
T ss_pred ecCCCcceeeecc
Confidence 9999999999964
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=244.01 Aligned_cols=276 Identities=18% Similarity=0.272 Sum_probs=243.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
.|.++|.++.|+-+|+|.+++| .|.+|++|++..+ .+.+++.+|...|..++.+.|+..|++|+.|..|.+||+.+|+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcG-sdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCG-SDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred ccccceEEEEEccCCCEEEEcC-CCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence 5669999999999999999998 9999999998776 6788999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC--eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG--SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~--~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
..+.+.+|.+.|..+.|+.+...+++|+-|..+++||.+.. ++++.+......|.++... +..+++|+.||+++.|
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence 99999999999999999999999999999999999999864 5788888888999999886 5679999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCe--EEEEEcCCCC
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPI--CFLSWSPNGK 250 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I--~~l~fSpdg~ 250 (945)
|++.|+.....- ..+|++++|+++|+..++++.++.+++.|..+|+.+..+.+ |...- ..+++.....
T Consensus 171 diR~G~l~sDy~---------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG-hkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 171 DIRKGTLSSDYF---------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG-HKNMEYKLDCCLNQSDT 240 (307)
T ss_pred Eeecceeehhhc---------CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc-cccceeeeeeeecccce
Confidence 999987654432 36799999999999999999999999999999999999887 65533 4456777788
Q ss_pred EEEEEECCCeEEEEECCCCeeeeeccCCCC--eeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 251 YMATSSLDRQILIWDVGKKLDIDRQKFDDR--ICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 251 ~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~--V~~la~spdg~~Las~s~DG~I~iW 305 (945)
.+++|+.||.|++||+.....+....+.+. |++++++|.-..|+++...+ +..|
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 999999999999999999988887665443 68999999887777775554 4444
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2.8e-29 Score=285.86 Aligned_cols=223 Identities=25% Similarity=0.390 Sum_probs=207.5
Q ss_pred CCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCE
Q 002266 38 SETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM 117 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~ 117 (945)
.|-.+.+.|.... .....+.+|.++|..+.|+|+.++|++++.|++|++|.+.+..+...+.+|..||+++.|+|.|-+
T Consensus 429 ad~~~~~~D~~~~-~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyY 507 (707)
T KOG0263|consen 429 ADVDVDMLDDDSS-GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYY 507 (707)
T ss_pred cchhhhhccccCC-ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceE
Confidence 4444566665554 445668999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCc
Q 002266 118 LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSM 197 (945)
Q Consensus 118 Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i 197 (945)
+|+++.|++.++|......+.+.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+. +|.++|
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-------GH~~~V 580 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-------GHKGPV 580 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------CCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999988885 567899
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002266 198 NVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 198 ~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.+++|+|+|++|++|+.||.|.+||+.+++.+..+.+ |.+.|.++.||.+|..||+|+.|.+|++||+...
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999988 8999999999999999999999999999998653
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=258.76 Aligned_cols=285 Identities=19% Similarity=0.255 Sum_probs=251.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc-------ccccccccccceEEEEEecCCCEEEEEEcCCcEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN-------LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKL 87 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~-------~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~i 87 (945)
|...-+-|..|||||++|++++ .||-|.||+..+++. ....+.-+..+|.|+.|+.|...|++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgS-vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGS-VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeecc-ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 4445688999999999999986 999999999877641 11234457889999999999999999999999999
Q ss_pred EEcCCCeeeeecc-cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 88 YKFPGGEFQTNIT-RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 88 wdl~~g~~~~~l~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
|.+.+|+++..+. .|+..|+|+.|+.|+..+++++.|.++++.-+..|+++..+++|...|+...|.++|.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999998887 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCC--CCCCeEEE
Q 002266 167 GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGD--HVQPICFL 243 (945)
Q Consensus 167 g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~--h~~~I~~l 243 (945)
|+|++|+..+..++.+++.. ....+|+.+-.-| +...++++...++|+|.++. |+.+..+..+ ..+...+.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~-----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPL-----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred ccEEEecCcchhhhhhccCC-----CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 99999999999998888653 2345678888777 66789999999999999996 7778777643 23567778
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 244 SWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 244 ~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
+.||.|.++++.+.|+.++.|.+.++.+-.. ..|...|.+++-+|..+.||+.+.||.+++|.
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 8999999999999999999999999988776 45778899999999999999999999999995
No 35
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=263.95 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=247.5
Q ss_pred cccccccccCCCCCEEEEEECCCCCE-EEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCc
Q 002266 6 VKLREAHKCGNAASFCSILWDQQAHH-LVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHS 84 (945)
Q Consensus 6 i~~~~aH~~gh~~~V~svafspdg~~-L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~ 84 (945)
......|. +| +.|.+++|+|...+ +++++ .-.+.||+..+. .....+......|.++.|-.||++|++|...|.
T Consensus 17 ~~~~~~~k-e~-~~vssl~fsp~~P~d~aVt~--S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~ 91 (487)
T KOG0310|consen 17 ETFPPVHK-EH-NSVSSLCFSPKHPYDFAVTS--SVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGH 91 (487)
T ss_pred hccccccc-cc-CcceeEecCCCCCCceEEec--ccEEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCc
Confidence 34455666 66 88999999997765 44443 568999997765 445556666889999999999999999999999
Q ss_pred EEEEEcCCCeeeeecccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccC-CCEEEE
Q 002266 85 VKLYKFPGGEFQTNITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPN-SEYLAS 162 (945)
Q Consensus 85 V~iwdl~~g~~~~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspd-g~~Las 162 (945)
|+|||+.+...+..+..|+.++..+.|+|. +..+++|++|+.+++||+.+......+.+|++.|.|.+|+|- +..+++
T Consensus 92 V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 92 VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 999997776667788999999999999995 566778888899999999998877789999999999999995 458899
Q ss_pred EeCCCcEEEEEccCC-eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeE
Q 002266 163 IDSIGTVIYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPIC 241 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~ 241 (945)
|+.||.|++||++.. ..+..+ .|..+|..+.+-|.|..|++++ .+.|+|||+.+|..+......|...|+
T Consensus 172 GsYDg~vrl~DtR~~~~~v~el--------nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVEL--------NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred cCCCceEEEEEeccCCceeEEe--------cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEE
Confidence 999999999999987 444444 4568899999999999999986 678999999977655444444999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
|+++..++..|++++.|+.|+|||+.+.+.+......++|.+++.+|+++.++.|-.+|.+.+-...+
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999888774443
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-28 Score=278.03 Aligned_cols=289 Identities=18% Similarity=0.274 Sum_probs=251.4
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
.+++|-.++|+|...+++++- ..|.|++||..-+ .+...+..|.++|+.++|+|++.++++|+.|-.|++|+..+.++
T Consensus 8 kSsRvKglsFHP~rPwILtsl-HsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSL-HSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEee-cCceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 347899999999999999985 8999999998665 56778899999999999999999999999999999999999999
Q ss_pred eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 002266 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~ 175 (945)
+.++.+|-.-|+.+.|++.-.+|+++|+|.+|+||+..+++++..+.+|...|.|..|+|....+++++-|.+|+|||+.
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCeeeeeecc----------------------cCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEe
Q 002266 176 SGRELHNLKR----------------------VAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE--KLFS 231 (945)
Q Consensus 176 t~~~i~~~~~----------------------~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~--~~~~ 231 (945)
.-+....-.. ......+|...|+.++|+|.-..|++|+.|..|++|.+...+ .+-+
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh
Confidence 4221110000 011234677889999999999999999999999999986443 2344
Q ss_pred ecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC-CCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF-DDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 232 ~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
..+ |...|+++-|+|...++++.+.|++|+|||+...+.+..+.+ .++.+.++-+|..+++++|...| +.+|.+.
T Consensus 246 crg-H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 246 CRG-HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred hhc-ccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence 455 999999999999999999999999999999999998888654 57899999999998887765555 6677665
No 37
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.7e-28 Score=285.23 Aligned_cols=290 Identities=23% Similarity=0.328 Sum_probs=245.7
Q ss_pred CCEEEEEECCCCCEEEEEEc-CCCeEEEEcCCCC-----------ccccccccccccceEEEEEecCCCEEEEEEcCCcE
Q 002266 18 ASFCSILWDQQAHHLVTASS-SETTISIHDPLLP-----------SNLPKILRHHRDGVTALALSPNSTCLASGSIDHSV 85 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~-~dg~V~IWd~~~~-----------~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V 85 (945)
..|.+|..+|+|..++++|. .|+.++||+...- .....+...|.+.|.|+.|+|||++||+|++|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 45999999999999999862 6778889984321 12233456799999999999999999999999999
Q ss_pred EEEEcCC------------------CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCC
Q 002266 86 KLYKFPG------------------GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP 147 (945)
Q Consensus 86 ~iwdl~~------------------g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~ 147 (945)
.||.... .+....+.+|...|.+++|+|++.+|++++.|++|.||+..+.+.+.++.+|.+.
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence 9998762 1356678899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC----CCeEEEEEC
Q 002266 148 VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL----KNDVVMYDR 223 (945)
Q Consensus 148 V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~----dg~I~vwD~ 223 (945)
|..+.|+|-|+|||+-+.|++|+||++.+....+.+..+.... .....+.++.|+|||.+|+++.. -..+.|.++
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~-~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES-PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC-CCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 9999999999999999999999999987766666665543222 22345688999999999998643 347999999
Q ss_pred CCCcEEEeecCCCCCCeEEEEEcCC-----CC------------EEEEEECCCeEEEEECCCCeeeeecc--CCCCeeEE
Q 002266 224 DTAEKLFSLRGDHVQPICFLSWSPN-----GK------------YMATSSLDRQILIWDVGKKLDIDRQK--FDDRICCM 284 (945)
Q Consensus 224 ~t~~~~~~~~~~h~~~I~~l~fSpd-----g~------------~Lasgs~Dg~I~IWD~~~~~~i~~~~--~~~~V~~l 284 (945)
.+|+.-..+.+ |..++.++.|+|. .. .+|+|+.|++|.||.....+++.... +...|..+
T Consensus 253 ~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm 331 (942)
T KOG0973|consen 253 GTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM 331 (942)
T ss_pred CCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee
Confidence 99998888888 9999999999981 11 57889999999999998887777643 47889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEecCC
Q 002266 285 AWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 285 a~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
+|+|||..|++++.||+|.+....-
T Consensus 332 sWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 332 SWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999999999999999999998753
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4e-29 Score=258.68 Aligned_cols=273 Identities=19% Similarity=0.334 Sum_probs=233.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
.....|+|+.+ |...+++| ..|.+|+|||..+. .+...+.+|++.|.|+.|.. +.|++|+.|.+|++||+.+|+
T Consensus 195 e~skgVYClQY--DD~kiVSG-lrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 195 ENSKGVYCLQY--DDEKIVSG-LRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred ccCCceEEEEe--cchhhhcc-cccCceEEeccccH-HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCc
Confidence 34577999998 45556666 59999999998765 66788999999999999864 599999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe---EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS---IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~---~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
++..+..|...|..+.|+. .++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 9999999999999999974 689999999999999997654 345678999999999997 569999999999999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCE
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~ 251 (945)
|++.++..++++.++ ...|.|+.+ .|+++++|+.|.+|++||+..|.++..+.+ |+.-|.++.| +.+.
T Consensus 345 W~~st~efvRtl~gH-------kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG-HEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGH-------KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRF--DNKR 412 (499)
T ss_pred Eeccceeeehhhhcc-------cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc-hHHhhhheee--cCce
Confidence 999999998888654 344555544 689999999999999999999999999988 9999999999 6678
Q ss_pred EEEEECCCeEEEEECCCCeee----------eeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 252 MATSSLDRQILIWDVGKKLDI----------DRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~~~~~~i----------~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
+++|+.||.|+|||+..+... ....|.+.|..+.|. ...+++++.|.+|.|||...+.
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 999999999999999765432 124677899999996 4579999999999999986543
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=8.4e-29 Score=246.90 Aligned_cols=283 Identities=17% Similarity=0.289 Sum_probs=254.6
Q ss_pred CCCCCEEEEEECC---CCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcC
Q 002266 15 GNAASFCSILWDQ---QAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 15 gh~~~V~svafsp---dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~ 91 (945)
||..+|..++||| +|-+|++++ .|+.-.+-+.+++ .-.-++.+|.+.|+....+.+...-++++.|-+-++||.-
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~-kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISAS-KDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEec-cCCCchhccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 7889999999985 788888887 9999999988887 4577899999999999999988888999999999999999
Q ss_pred CCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe-EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002266 92 GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS-IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 92 ~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~ 170 (945)
+|..+..+. |..-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.+++++.|++|+
T Consensus 90 tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 90 TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 998877765 78889999999999999999999999999998754 5677889999999999999999999999999999
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCC
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
+||.+++..++++.. ..+++++..+++|++|.++ ..+.|.+||..+...+..+. -...|.+..++|+..
T Consensus 169 LWD~rTgt~v~sL~~--------~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEF--------NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKE 237 (334)
T ss_pred EEEeccCcEEEEEec--------CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc--CccccccccccCCCc
Confidence 999999999988864 3668899999999988776 47789999999999988876 456899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 251 YMATSSLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 251 ~Lasgs~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
++++|+.|..++.||..++..+.. .+|.++|.|+.|+|+|...++|+.||+|++|......
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999999988877 5788999999999999999999999999999987654
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.4e-28 Score=272.92 Aligned_cols=294 Identities=20% Similarity=0.281 Sum_probs=255.5
Q ss_pred cccccccccCCCCCEEEEEE-CCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCc
Q 002266 6 VKLREAHKCGNAASFCSILW-DQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHS 84 (945)
Q Consensus 6 i~~~~aH~~gh~~~V~svaf-spdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~ 84 (945)
+++...-. |-++.|..|+| .|+.++|+++. +.+.+++|+..+.. ...+.+|.+.|.+++...+|.+|++|+.|.+
T Consensus 313 l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVAT-Ns~~lr~y~~~~~~--c~ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 313 LTIVKQIV-GYNDEILDMKFLGPEESHLAVAT-NSPELRLYTLPTSY--CQIIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred cEEehhhc-CCchhheeeeecCCccceEEEEe-CCCceEEEecCCCc--eEEEeCchhheeeeeecccCcEEEEecCCce
Confidence 34444444 66788999987 57788999987 89999999876653 4488999999999996678889999999999
Q ss_pred EEEEEcCCCe----eeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-----EEE----EEecCCCCEEE
Q 002266 85 VKLYKFPGGE----FQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGS-----IAR----VLKGHKGPVTG 150 (945)
Q Consensus 85 V~iwdl~~g~----~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~-----~~~----~l~~h~~~V~~ 150 (945)
|++|.++++. ++....+|...|.+++++..+ .+|+++|.|+++++|++...+ ... +...|...|++
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 9999885443 345567899999999998754 689999999999999997622 111 23579999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002266 151 LAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLF 230 (945)
Q Consensus 151 lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~ 230 (945)
++++|+.++++||+.|.+.+||++........+. +|...+.++.|+|..+.+++++.|++|+||.+.+..++.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-------GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-------GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEee-------CCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 9999999999999999999999999888777776 456789999999999999999999999999999999999
Q ss_pred eecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 231 SLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 231 ~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
++.+ |...|..+.|-.+|..|++++.||.|+||++.++.++.. -.|.+.|++++-+|.+..+++|+.||.|.+|...+
T Consensus 542 T~eG-H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 542 TFEG-HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eecC-ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9998 999999999999999999999999999999999999988 46899999999999999999999999999998765
Q ss_pred CC
Q 002266 310 PS 311 (945)
Q Consensus 310 ~~ 311 (945)
..
T Consensus 621 e~ 622 (775)
T KOG0319|consen 621 EE 622 (775)
T ss_pred HH
Confidence 43
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=237.62 Aligned_cols=274 Identities=20% Similarity=0.283 Sum_probs=239.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc-ccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN-LPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~-~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~ 92 (945)
+|...|.+|+|+.+|..|+.++ .|+++.||++..... ......+|.+.|-.++|+| ....|++++.|..|++||++.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs-~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGS-FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecc-cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 6778899999999999999986 999999999876532 2234678999999999998 568999999999999999999
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
+++...+....+ -.-+.|+|+|.++++++.|..|.++|.++.+.....+ ....+..++|+-++.+++.....|+|.|.
T Consensus 97 ~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 97 GKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred CcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 998877764443 4468899999999999999999999999887766554 45678889999888887777778999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYM 252 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~L 252 (945)
....-+.+..++ .|+....|+.|+|+|++||+|+.|-.+.+||+...-+++.+.. +.-+|..+.||.+|++|
T Consensus 175 sypsLkpv~si~-------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 175 SYPSLKPVQSIK-------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRML 246 (313)
T ss_pred eccccccccccc-------cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCccee
Confidence 988777776665 5567788999999999999999999999999998888888876 88999999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcC
Q 002266 253 ATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVM 299 (945)
Q Consensus 253 asgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~D 299 (945)
|+++.|..|-|=++.+|..+..+.+.++...++|+|...+||.+..|
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 99999999999999999999999999999999999999999998765
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.6e-26 Score=251.47 Aligned_cols=293 Identities=16% Similarity=0.211 Sum_probs=250.9
Q ss_pred ccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-cccccccccccceEEEEEecCCCEEEEEEcC----CcE
Q 002266 11 AHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS-NLPKILRHHRDGVTALALSPNSTCLASGSID----HSV 85 (945)
Q Consensus 11 aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-~~~~~l~~h~~~V~~la~spdg~~Lasgs~D----g~V 85 (945)
... +|...++-..|||.|.|++++- ..|.|||||..... .+...+..-.++|..|+|+.++++|++.++. |.+
T Consensus 54 iYt-EH~~~vtVAkySPsG~yiASGD-~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 54 IYT-EHAHQVTVAKYSPSGFYIASGD-VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eec-cccceeEEEEeCCCceEEeecC-CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 345 7778899999999999888874 89999999976532 3445566678899999999999999887653 456
Q ss_pred EEEEcCCCeeeeecccCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002266 86 KLYKFPGGEFQTNITRFTLPIRVLAFNKSGS-MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASID 164 (945)
Q Consensus 86 ~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s 164 (945)
.+|| +|..+..+.+|...|.++.|-|... .+++|++|+.|.+|+-...+...+++.|...|.|+.|+|||+++++++
T Consensus 132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 6665 7778889999999999999998654 699999999999999877777788899999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCC--CCeEE
Q 002266 165 SIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHV--QPICF 242 (945)
Q Consensus 165 ~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~--~~I~~ 242 (945)
.||+|.+||-.+++.+..+.. ...|.+.|..++|+||+..|++++.|.+++|||..+.+.+.++.-... .....
T Consensus 210 sDgki~iyDGktge~vg~l~~----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELED----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred CCccEEEEcCCCccEEEEecC----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence 999999999999999888864 336789999999999999999999999999999999998888865322 33444
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 243 LSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
+.|- ...|++.+.+|.|.+++.....++.. .+|...|+++..+|++.+|++|+.||.|.-|+...+..-
T Consensus 286 ~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 286 CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 5565 66899999999999999988886665 679999999999999999999999999999999877653
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.8e-26 Score=247.86 Aligned_cols=249 Identities=28% Similarity=0.496 Sum_probs=224.3
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
..+.+|.++|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+++++++++++.++.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999998887778888888999999999999999999999999999998
Q ss_pred CeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 135 GSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 135 ~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
+.....+..|...|.++.|++++.++++++.+|.|.+||+.+++....+. .+...+.+++|+|++.++++++.
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-------GHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-------cCCCcEEEEEEcCcCCEEEEEcC
Confidence 88888888999999999999998888888889999999999887766654 34567899999999999998888
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec-cCCCCeeEEEEecCCCEE
Q 002266 215 KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ-KFDDRICCMAWKPIGNAL 293 (945)
Q Consensus 215 dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~-~~~~~V~~la~spdg~~L 293 (945)
++.|++||+++++.+..+.. |...|.+++|+|+++.+++++.++.|++||+..+..+... .+...+.+++|+|++.++
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred CCcEEEEEccccccceeEec-CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 99999999998888877775 7789999999999999999999999999999988888776 777899999999998888
Q ss_pred EEEEcCCeEEEEecCCCC
Q 002266 294 AVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 294 as~s~DG~I~iWd~~~~~ 311 (945)
++++.+|.|++|+.....
T Consensus 235 ~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EEEcCCCcEEEEEcCCce
Confidence 888889999999987544
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=248.73 Aligned_cols=249 Identities=19% Similarity=0.322 Sum_probs=230.4
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI 133 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~ 133 (945)
...+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.+|++..++.+|-..|+.+++|+-..|+++++.|+.|+.||++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe
Q 002266 134 DGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG 213 (945)
Q Consensus 134 ~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs 213 (945)
..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...++.+. +|..+|.++.+.|-...+++|+
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-------GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-------GHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-------CCCCcceeEEeecCCCceEEec
Confidence 999999999999999999999999999999999999999999999888886 4568889999999777899999
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCE
Q 002266 214 LKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNA 292 (945)
Q Consensus 214 ~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~ 292 (945)
.|++|++||++.++....+.. |...|.+++.+|....+|+++.|. |+-|++..+..+.. .+|..-|.+++...|+ +
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred CCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 999999999999999888876 899999999999999999999775 99999999888776 5577788999998877 8
Q ss_pred EEEEEcCCeEEEEecCCCCC
Q 002266 293 LAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 293 Las~s~DG~I~iWd~~~~~~ 312 (945)
+++|+.+|.+.+||-..+-.
T Consensus 374 ~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred EEEcCCceEEEEEecCcCcc
Confidence 89999999999999876654
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=248.65 Aligned_cols=243 Identities=21% Similarity=0.335 Sum_probs=227.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||...|..|+|+..|++|++++ .|-.+.+||........+.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+|-
T Consensus 148 GHt~sv~di~~~a~Gk~l~tcS-sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~ 226 (406)
T KOG0295|consen 148 GHTDSVFDISFDASGKYLATCS-SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY 226 (406)
T ss_pred ccccceeEEEEecCccEEEecC-CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce
Confidence 6778999999999999999986 888899999877666778888999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccC---------------CCE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPN---------------SEY 159 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspd---------------g~~ 159 (945)
++..+.+|...|+.+..+.||.++|+++.|.+|++|-+.++.+...++.|..+|.+++|-|. +.+
T Consensus 227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence 99999999999999999999999999999999999999999888999999999999999763 248
Q ss_pred EEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCC
Q 002266 160 LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQP 239 (945)
Q Consensus 160 Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~ 239 (945)
+++++.|++|++||+.++.++.++. +|...|..++|+|.|+||+++..|+++++||+++.++...+.. |..-
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~-------ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~hf 378 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLV-------GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HEHF 378 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEe-------cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-Ccce
Confidence 9999999999999999999998886 4678899999999999999999999999999999999999985 9999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002266 240 ICFLSWSPNGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 240 I~~l~fSpdg~~Lasgs~Dg~I~IWD~ 266 (945)
++++.|..+-.|+++|+-|..+++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999964
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.6e-27 Score=245.99 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=239.8
Q ss_pred cccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCC---CEEEEEEcCCc
Q 002266 8 LREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS---TCLASGSIDHS 84 (945)
Q Consensus 8 ~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg---~~Lasgs~Dg~ 84 (945)
+.+.|.+-|...|.+|... +++|++++ .||.++|||... ....++.+|.++|.+++|.-.. ..|++++.|.+
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~Iltgs-YDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGS-YDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEee-cCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 4555666788999998886 88899987 999999999643 5677889999999998887533 35999999999
Q ss_pred EEEEEcCCCeee----eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC-------------------------CC
Q 002266 85 VKLYKFPGGEFQ----TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI-------------------------DG 135 (945)
Q Consensus 85 V~iwdl~~g~~~----~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~-------------------------~~ 135 (945)
+++|.++.++.. ....+|...|-++...++|..+++|+.|.+|+||+.. ++
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 999999877543 3345899999999999999999999999999999932 12
Q ss_pred eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d 215 (945)
.++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.. ...++++..+|..++|++|+.|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--------~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--------NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--------CcceeEeecccccceeeecCCC
Confidence 35667889999999999998 67899999999999999999988777653 3567899999999999999999
Q ss_pred CeEEEEECCCCc---EEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe-eeee-ccCCCCeeEEEEecC
Q 002266 216 NDVVMYDRDTAE---KLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKKL-DIDR-QKFDDRICCMAWKPI 289 (945)
Q Consensus 216 g~I~vwD~~t~~---~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~~-~i~~-~~~~~~V~~la~spd 289 (945)
..|++||.+++. ..+++.+ |..-|.++.|+|. ...|++++.|+++++||+++.. ++.. ..|...|.++.|+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~- 399 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE- 399 (423)
T ss_pred CceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-
Confidence 999999998764 3456666 9999999999995 4568899999999999998866 5544 67899999999985
Q ss_pred CCEEEEEEcCCeEEEEec
Q 002266 290 GNALAVIDVMGKYGVWES 307 (945)
Q Consensus 290 g~~Las~s~DG~I~iWd~ 307 (945)
+..|++|+.|.+|+|+.-
T Consensus 400 ~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CceEEeccCcceEEEecc
Confidence 448999999999999864
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-26 Score=233.45 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=238.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||..+++.|.|+.+|.+|++|+ .|.+..||-..++ ...-++.+|.+.|+|++.+.+.++|++|+.|.++++||+++|+
T Consensus 8 GHERplTqiKyN~eGDLlFsca-KD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCA-KDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cCccccceEEecCCCcEEEEec-CCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 6779999999999999999997 9999999987666 4567899999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCC-------CeEEEEEecCCCCEEEEEEccCCCEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDD-----EGIKLINTID-------GSIARVLKGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~-------~~~~~~l~~h~~~V~~lafspdg~~Las 162 (945)
.+..+. ...+|..+.|+++|++++...++ +.|.++|++. .++...+..+...++.+.|.|-+++|++
T Consensus 86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 988876 67899999999999998888654 5699999983 4457777888899999999999999999
Q ss_pred EeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEE
Q 002266 163 IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF 242 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~ 242 (945)
|..||.|.+||++++........ .|...|+.++++++..++++++.|.+-++||..+.+.+.++. ...+|++
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~ 236 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDE------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNT 236 (327)
T ss_pred ecCCCcEEEEEcccCceeeechh------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccccc
Confidence 99999999999999865543321 455689999999999999999999999999999999999887 4689999
Q ss_pred EEEcCCCCEEEEEECCCe--EEEEECCCCe------------eee-eccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 243 LSWSPNGKYMATSSLDRQ--ILIWDVGKKL------------DID-RQKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~--I~IWD~~~~~------------~i~-~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
.+++|.-.+++.|+.-.. |.-=+.+.++ .+. ..+|-++|++++|+|+|+..++|+.||.|++.-.
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 999998777777754322 2111222221 122 2467899999999999999999999999999743
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.8e-27 Score=262.51 Aligned_cols=281 Identities=15% Similarity=0.226 Sum_probs=247.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.+.|.++++|.+...++++ ..+.++||+..+. .+..++.. +-+.+..|.|.++++++|...|.+.+||+.+..
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sg--a~~SikiWn~~t~-kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASG--AGESIKIWNRDTL-KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred cchhheeEEEeecCceeeeec--CCCcEEEEEccCc-ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 788999999999888766665 5789999998876 44555543 488999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-----CeEEEEEe-------cCCCCEEEEEEccCCCEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID-----GSIARVLK-------GHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-----~~~~~~l~-------~h~~~V~~lafspdg~~Las 162 (945)
.+..+..|.+.|++++.+||+..+++|+.|.+|++||..- +...+.+. .-...|.|++++|||++|++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 9999999999999999999999999999999999999741 22211111 24578999999999999999
Q ss_pred EeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEE
Q 002266 163 IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF 242 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~ 242 (945)
+--|.+|+||-+.+-+...++. +|.-+|.|+..+||++.+++|+.|..|++|-++-|.+-..+.. |...|.+
T Consensus 526 sLLdnTVkVyflDtlKFflsLY-------GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA-HdDSvm~ 597 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLY-------GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-HDDSVMS 597 (888)
T ss_pred EeccCeEEEEEecceeeeeeec-------ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc-ccCceeE
Confidence 9999999999998877665554 5678899999999999999999999999999999999888887 9999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 243 LSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
+.|.|...++.+++.|+.|+-||-...+.+.. .+|...|++++.+|+|.++++++.|.+|++|+-.
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 99999999999999999999999998887776 6788999999999999999999999999999764
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.6e-27 Score=271.96 Aligned_cols=247 Identities=26% Similarity=0.387 Sum_probs=222.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
+|...|.+++|+|+|+++++++ .|++|+|||+.......+++.+|...|++++|+|+|+++++|+.|++|+|||+.+++
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s-~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGS-DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEec-CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 7889999999999999999886 999999999966557788999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe--EEEEEecCCCC--EEEEEEccCCCEEEEEeCCCcEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS--IARVLKGHKGP--VTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~--~~~~l~~h~~~--V~~lafspdg~~Las~s~Dg~I~ 170 (945)
+...+..|...|++++|++++++|++++.|+.|+|||+.++. +...+..+... ++++.|+|++.+|++++.|+.++
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 999999999999999999999999999999999999999998 55677766655 99999999999999999999999
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCC-CCCeEEEEEcCCC
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH-VQPICFLSWSPNG 249 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h-~~~I~~l~fSpdg 249 (945)
+||+..+..+..+..+... ...+.+...++.|.++++|+.|+.|++||+.++..+..+.+ | ...+..+.|+|..
T Consensus 360 ~w~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNL----VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-HSKAAVSDLSSHPTE 434 (456)
T ss_pred EEEccCCcceeeecccCCc----ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-CCCCceeccccCCCc
Confidence 9999999888877654322 12344555678999999999999999999999888888887 7 8899999999999
Q ss_pred CEEEEEE--CCCeEEEEECC
Q 002266 250 KYMATSS--LDRQILIWDVG 267 (945)
Q Consensus 250 ~~Lasgs--~Dg~I~IWD~~ 267 (945)
.++++++ .|+.|++|...
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeeeecCcCCCceEEEecCC
Confidence 9999998 68999999754
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=226.52 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=208.7
Q ss_pred cccccccccceEEEEEecC-CCEEEEEEcCCcEEEEEcCCC---eeeeec-ccCCCCEEEEEEecCCCEEEEEECCCcEE
Q 002266 54 PKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGG---EFQTNI-TRFTLPIRVLAFNKSGSMLAAAGDDEGIK 128 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~~g---~~~~~l-~~~~~~V~~l~fspdg~~Lasgs~Dg~I~ 128 (945)
...+.+|.+.|..++|+|- |..||+|+.|..|++|+...+ .+...+ ..|+..|+.++|+|.|++|++|+.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4567889999999999997 889999999999999998753 233223 35888999999999999999999999999
Q ss_pred EEEcCCC--eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC
Q 002266 129 LINTIDG--SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG 206 (945)
Q Consensus 129 iwd~~~~--~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg 206 (945)
||.-..+ +++.++.+|...|.|++|+++|++||+|+.|..|.||.+..+........ +..|...|..+.|||..
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV----L~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV----LQEHTQDVKHVIWHPTE 162 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee----eccccccccEEEEcCCc
Confidence 9987654 57889999999999999999999999999999999999986654433322 22556778889999999
Q ss_pred CEEEEEeCCCeEEEEECC---CCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeE
Q 002266 207 ETLAVPGLKNDVVMYDRD---TAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICC 283 (945)
Q Consensus 207 ~~La~gs~dg~I~vwD~~---t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~ 283 (945)
.+|++++.|++|++|... .+.++.++.+ |...|.+++|++.|..|++++.|++|+||...+. ....|...+..
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEe
Confidence 999999999999999876 5678888887 8889999999999999999999999999986632 12345678999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEecC
Q 002266 284 MAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 284 la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
++|. ...|++++.|+.|++|...
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEec
Confidence 9999 4489999999999999866
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-26 Score=254.24 Aligned_cols=249 Identities=16% Similarity=0.331 Sum_probs=229.9
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
+.+..++..|.++.|+|...+++++-.+|.|.||+..+...+..+.-...||++..|-+..+++++|++|+.|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 44556889999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC-eeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEE
Q 002266 135 GSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVP 212 (945)
Q Consensus 135 ~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~g 212 (945)
++.+..+..|.+.|++++.+|...++++++.|-+|++||.... .+.+++. +|...|.+++|.| |.+.++++
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-------GH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-------GHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-------CcceEEEEEEecCCCccceeee
Confidence 9999999999999999999999999999999999999999876 4445554 5678899999999 78999999
Q ss_pred eCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecC
Q 002266 213 GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNG--KYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPI 289 (945)
Q Consensus 213 s~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg--~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spd 289 (945)
+.|++|+||.+.+..+.+++.+ |...|+++.+-+.| .||++|+.|..|+|||.++..++.+ .+|...|..+.|+|.
T Consensus 160 sLDrTVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred eccccEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 9999999999999999999997 99999999998854 6999999999999999999999988 569999999999999
Q ss_pred CCEEEEEEcCCeEEEEecCCCC
Q 002266 290 GNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 290 g~~Las~s~DG~I~iWd~~~~~ 311 (945)
-..+++|+.||+++||...+=.
T Consensus 239 lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred CcEEEEecCCccEEEecCccee
Confidence 9999999999999999876544
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=236.29 Aligned_cols=287 Identities=18% Similarity=0.281 Sum_probs=240.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC------C-----------ccccccccccccceEEEEEecCCCEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLL------P-----------SNLPKILRHHRDGVTALALSPNSTCLA 77 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~------~-----------~~~~~~l~~h~~~V~~la~spdg~~La 77 (945)
.|...+.+.+|+|||.++++++ .|..|+|.|++. . ..+.+++-.|.+.|+++.|+|....|+
T Consensus 110 ~HK~~cR~aafs~DG~lvATGs-aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGS-ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ecccceeeeeeCCCCcEEEccC-CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 5669999999999999999986 999999999751 0 123456778999999999999999999
Q ss_pred EEEcCCcEEEEEcCCCeeeeec--ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE---ecCCCCEEEEE
Q 002266 78 SGSIDHSVKLYKFPGGEFQTNI--TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL---KGHKGPVTGLA 152 (945)
Q Consensus 78 sgs~Dg~V~iwdl~~g~~~~~l--~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l---~~h~~~V~~la 152 (945)
+|+.|++|++||+......+.+ .....+|+++.|+|.|.+|++|.+-..+++||+.+.++.... ..|.+.|+++.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence 9999999999999765433322 234678999999999999999999999999999988765543 36889999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee
Q 002266 153 FDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 153 fspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~ 232 (945)
+++.+++.++++.||.|++||--+++++.++... .....|++..|..+|+++++.+.|..+++|.+.+++.+..+
T Consensus 269 Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-----H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-----HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred ecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-----cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999999888887642 33467899999999999999999999999999999999888
Q ss_pred cCCCC-C---CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 233 RGDHV-Q---PICFLSWSPNGKYMATSSL-DRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 233 ~~~h~-~---~I~~l~fSpdg~~Lasgs~-Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG~I~iW 305 (945)
.+... + --+...|.....|++.-.. .+.+.-||.++...+.. .+|.+.+..+.-+|.+..+++|+.|-.+++|
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 76321 1 1233457777778776654 57899999988766554 7899999999999999999999999999999
Q ss_pred ec
Q 002266 306 ES 307 (945)
Q Consensus 306 d~ 307 (945)
--
T Consensus 424 yr 425 (430)
T KOG0640|consen 424 YR 425 (430)
T ss_pred ee
Confidence 54
No 53
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=258.00 Aligned_cols=267 Identities=13% Similarity=0.169 Sum_probs=209.7
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc---------c---ccccccccccceEEEEEec-CCCEEEEEEcC
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS---------N---LPKILRHHRDGVTALALSP-NSTCLASGSID 82 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~---------~---~~~~l~~h~~~V~~la~sp-dg~~Lasgs~D 82 (945)
|-..|.....++++..+++++ .+.....|+...+. . ....+.+|.+.|++++|+| ++.+|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n-~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACN-DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeEC-CceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 445566666777877666654 55555666532221 1 1124678999999999999 88999999999
Q ss_pred CcEEEEEcCCCe-------eeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEc
Q 002266 83 HSVKLYKFPGGE-------FQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFD 154 (945)
Q Consensus 83 g~V~iwdl~~g~-------~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafs 154 (945)
++|++|++.++. .+..+.+|...|.+++|+|++ .+|++|+.|+.|+|||+.++.....+.+|...|.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 999999997652 355678899999999999975 699999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEE-
Q 002266 155 PNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG----LKNDVVMYDRDTAEKL- 229 (945)
Q Consensus 155 pdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs----~dg~I~vwD~~t~~~~- 229 (945)
|+|.+|++++.||.|++||+++++.+..+..+. ......+.|.+++..+++++ .|+.|++||+++....
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~------~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA------SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCC------CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 999999999999999999999998877665331 12235678999887777654 4789999999876533
Q ss_pred EeecCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeeeec--cCCCCeeEEEEecC
Q 002266 230 FSLRGDHVQPICFLSWSPNGKYMATSS-LDRQILIWDVGKKLDIDRQ--KFDDRICCMAWKPI 289 (945)
Q Consensus 230 ~~~~~~h~~~I~~l~fSpdg~~Lasgs-~Dg~I~IWD~~~~~~i~~~--~~~~~V~~la~spd 289 (945)
..........+....|++++.+|++++ .|+.|++||+.++..+... .+..++.+++|.|.
T Consensus 252 ~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 252 STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 333322344566678999999999887 5999999999998877653 34567889999885
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-26 Score=229.92 Aligned_cols=279 Identities=21% Similarity=0.347 Sum_probs=225.3
Q ss_pred EEEEECCC-CCEEEEEE------cCCCeEEEEcCCCCccccccc-cccccceEEEEEecC-CCEEEEEEcCCcEEEEEcC
Q 002266 21 CSILWDQQ-AHHLVTAS------SSETTISIHDPLLPSNLPKIL-RHHRDGVTALALSPN-STCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 21 ~svafspd-g~~L~t~g------~~dg~V~IWd~~~~~~~~~~l-~~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~ 91 (945)
.++.|||- ..+|+++. ...|++.|.++..+..+.... -.-.+.+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 56789994 23344332 247899999986433222211 123678999999995 4688889999999999964
Q ss_pred C-CeeeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCc
Q 002266 92 G-GEFQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASIDSIGT 168 (945)
Q Consensus 92 ~-g~~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~Las~s~Dg~ 168 (945)
. ..++..++.|...|.++.|++ ++..+++++.|++|++|+...+..+.++.+|...|...+|+| .++.+++++.||+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 346778889999999999998 566788889999999999999999999999999999999999 6789999999999
Q ss_pred EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEc
Q 002266 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWS 246 (945)
Q Consensus 169 I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fS 246 (945)
+++||++.......+. .|...+.++.|+. +.+.+++|+.|+.|+.||++..+ ++..+.+ |.-.|..+.||
T Consensus 172 l~lwdvr~~gk~~~i~-------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~S 243 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIE-------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG-HGLAVRKVKFS 243 (311)
T ss_pred EEEEEecCCCceeEEE-------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC-CceEEEEEecC
Confidence 9999998764433343 4456789999998 77889999999999999999865 5677765 99999999999
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCee-eee-ccCCCCeeEEEEecC-CCEEEEEEcCCeEEEEec
Q 002266 247 PN-GKYMATSSLDRQILIWDVGKKLD-IDR-QKFDDRICCMAWKPI-GNALAVIDVMGKYGVWES 307 (945)
Q Consensus 247 pd-g~~Lasgs~Dg~I~IWD~~~~~~-i~~-~~~~~~V~~la~spd-g~~Las~s~DG~I~iWd~ 307 (945)
|. ..+||+++.|-+++|||...+.. +.. ..|...++++.|++- +.++|+++.|+.++||+.
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 95 56899999999999999985443 333 456788999999984 558999999999999985
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=234.80 Aligned_cols=249 Identities=20% Similarity=0.385 Sum_probs=217.0
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcC-CCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP-GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT 132 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~-~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 132 (945)
...+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++. .-+....+.+|.+.|..+.|.+|++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34567899999999999999999999999999999954 33445677899999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE
Q 002266 133 IDGSIARVLKGHKGPVTGLAFDPNSE-YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV 211 (945)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~lafspdg~-~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~ 211 (945)
++|+.++.+++|...|+.+.-+.-|. ++.+++.||++++||+++...++++.. ...++++.|...+..+.+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--------kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--------KYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--------ceeEEEEEecccccceee
Confidence 99999999999999999998554444 567788899999999998887776632 355788999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----eee-cc----CCCCee
Q 002266 212 PGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLD----IDR-QK----FDDRIC 282 (945)
Q Consensus 212 gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~----i~~-~~----~~~~V~ 282 (945)
|+-|+.|++||++....++.+.+ |..+|+.+..+|+|.++.+-+.|.++++||++.... +.. .+ +.....
T Consensus 192 ggIdn~ikvWd~r~~d~~~~lsG-h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTLSG-HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ccccCceeeeccccCcceEEeec-ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 99999999999999999999998 999999999999999999999999999999975322 332 22 244567
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 283 CMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 283 ~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
.++|+|++..+.+|+.|..+++||...-.
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred eeeccCCCCccccccccceEEEeeccccc
Confidence 88999999999999999999999986644
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-26 Score=225.37 Aligned_cols=248 Identities=18% Similarity=0.236 Sum_probs=217.8
Q ss_pred ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 002266 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT 132 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 132 (945)
...++..|.++|.++.|+-||+|.++++.|.+|++|+...|.+++++.+|...|.+++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC--eeeeeecccCCCCCCCCCCceEEEEcCCCCEEE
Q 002266 133 IDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG--RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLA 210 (945)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~--~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La 210 (945)
.+|+..+.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++. ++++.+.. ....|.++.. .+..|+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-------a~D~V~Si~v--~~heIv 159 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-------AKDGVSSIDV--AEHEIV 159 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-------hcCceeEEEe--cccEEE
Confidence 999999999999999999999999999999999999999999875 34444432 2345666665 467899
Q ss_pred EEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCC--eeEEEEe
Q 002266 211 VPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDR--ICCMAWK 287 (945)
Q Consensus 211 ~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~--V~~la~s 287 (945)
.|+.||+++.||++.|.......+ .+|++++|+++|+.+++++.|++|++.|-.+++++.. .+|... -...+++
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g---~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFG---HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcC---CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 999999999999999987655544 6999999999999999999999999999999999887 445433 3456677
Q ss_pred cCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 288 PIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 288 pdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
.....+++|+.||.|++||+.....
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ccceeEEeccCCceEEEEEecccee
Confidence 7778999999999999999986654
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-24 Score=225.57 Aligned_cols=292 Identities=14% Similarity=0.243 Sum_probs=237.9
Q ss_pred ccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc--C
Q 002266 5 SVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI--D 82 (945)
Q Consensus 5 ~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~--D 82 (945)
+++..+... .-.+.|+++.|+++|.+|++++ .|..++|||..++. ...++..+.-.|..++|......++.++. |
T Consensus 3 s~~~ak~f~-~~~~~i~sl~fs~~G~~litss-~dDsl~LYd~~~g~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 3 SFRPAKVFR-ETNGKINSLDFSDDGLLLITSS-EDDSLRLYDSLSGK-QVKTINSKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred ccccccccc-cCCCceeEEEecCCCCEEEEec-CCCeEEEEEcCCCc-eeeEeecccccccEEEEecCCceEEEccCCCC
Confidence 344444444 4457899999999999999976 88899999998874 46667777778999999887777777766 8
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEE
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las 162 (945)
.+|+..++.+.+.++.+.+|...|..|+.+|-+..+++++.|++|++||++..++...+.....+ .++|+|.|-++|+
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~ 157 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFAL 157 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEE
Confidence 89999999999999999999999999999999999999999999999999988877766654444 4789999999999
Q ss_pred EeCCCcEEEEEccCC--eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC--
Q 002266 163 IDSIGTVIYWELQSG--RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ-- 238 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~--~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~-- 238 (945)
+.....|++||++.- .+..++.... ......+.+.|+|+|++|++++..+.+++.|.-+|..+.++.. +..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~~~ 232 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITD----NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-YPNAG 232 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCC----CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee-ccCCC
Confidence 988779999999874 2233332211 2345678899999999999999999999999999998888765 222
Q ss_pred -CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc--CCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 239 -PICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK--FDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 239 -~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~--~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
--...+|+|+|+++++|+.||+|.+|+++++..+.... +..++.++.|+|.-..+++ .+..+.+|-..
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPD 303 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--cCceEEEEecc
Confidence 12567899999999999999999999999998887743 4678999999998555554 46678888543
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=9.2e-27 Score=247.11 Aligned_cols=279 Identities=17% Similarity=0.263 Sum_probs=241.4
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS-NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
|.+.|..+.|-++...|+++| .|..|++|++...+ ....++.+..++|+++.|.++++++++++.|+.+++|++...+
T Consensus 174 h~gev~~v~~l~~sdtlatgg-~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGG-SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred cccccceeEEccCcchhhhcc-hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 448899999999989999997 89999999976543 3556777888999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
...++.+|+..|+++.|......+++|+.|.+|++||+....+..++. ....+..|..+ ...++++..|+.|++||+
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEec
Confidence 999999999999999999877779999999999999999887776654 23556666665 556889999999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC---CCCCeEEEEEcCCCCE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSWSPNGKY 251 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~---h~~~I~~l~fSpdg~~ 251 (945)
++......... .+.|+++..+++|..|++++.|..+.++|+++.+....+... .....+.++|||++.|
T Consensus 330 Rs~~~~~sv~~--------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 330 RSADKTRSVPL--------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred cCCceeeEeec--------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 99988877653 257899999999999999999999999999998877666531 2245889999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeeecc--C-CCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 252 MATSSLDRQILIWDVGKKLDIDRQK--F-DDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~~~~~~i~~~~--~-~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
+|+|+.||.|+||++.++++..... + ...|++++|+|.|..|++++.++.+.+|.
T Consensus 402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999998877633 2 23699999999999999999999999993
No 59
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=213.33 Aligned_cols=289 Identities=22% Similarity=0.324 Sum_probs=238.8
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCC------C----Cccc----cccccccccceEEEEEecCCCEEEEEEc
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPL------L----PSNL----PKILRHHRDGVTALALSPNSTCLASGSI 81 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~------~----~~~~----~~~l~~h~~~V~~la~spdg~~Lasgs~ 81 (945)
....|.+++|+|.|...++++ +..+++|.... . .... .+..+.|.+.|+|.+|+|+|.+|++|+.
T Consensus 31 dsqairav~fhp~g~lyavgs-nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGS-NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCceEEecc-CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 346799999999999888875 88888887421 1 1111 1234578999999999999999999999
Q ss_pred CCcEEEEEcCCCee-----eeecccCCCCEEEEEEec----CCCEEEEEE-CCCcEEEEEcCCCeEEEEEecCCCCEEEE
Q 002266 82 DHSVKLYKFPGGEF-----QTNITRFTLPIRVLAFNK----SGSMLAAAG-DDEGIKLINTIDGSIARVLKGHKGPVTGL 151 (945)
Q Consensus 82 Dg~V~iwdl~~g~~-----~~~l~~~~~~V~~l~fsp----dg~~Lasgs-~Dg~I~iwd~~~~~~~~~l~~h~~~V~~l 151 (945)
|.+|++..+....+ ...+..|.+.|+.++|.. .+.+|++++ .|..|++-|..+|+..+.+.+|.+.|.++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 99999988754332 234566889999999975 345666665 46788888999999999999999999876
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEe
Q 002266 152 AFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231 (945)
Q Consensus 152 afspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~ 231 (945)
++-+|-.+++|+.|.+|++||++-..++..+.......+-..+.|..++..|.|++|++|..|....+||++.++.+..
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 3446889999999999999999998888887655444444557889999999999999999999999999999999999
Q ss_pred ecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----eeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKL-----DIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 232 ~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~-----~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
+.. |...|.++.|||...|+++++.|..|++-|+.... .+....|...+..+.|+|..-.+++.+.|.++.+|-
T Consensus 269 f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 269 FHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 986 99999999999999999999999999999986531 122356888899999999998899999999999996
Q ss_pred c
Q 002266 307 S 307 (945)
Q Consensus 307 ~ 307 (945)
+
T Consensus 348 ~ 348 (350)
T KOG0641|consen 348 L 348 (350)
T ss_pred c
Confidence 5
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.4e-26 Score=260.73 Aligned_cols=251 Identities=15% Similarity=0.225 Sum_probs=207.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC--------------------------------C------------
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLL--------------------------------P------------ 50 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~--------------------------------~------------ 50 (945)
.|.+.|+++.||+||+|||++| .|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaG-eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAG-EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecC-CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 4569999999999999999998 999999997644 0
Q ss_pred ---------------ccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEec-C
Q 002266 51 ---------------SNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK-S 114 (945)
Q Consensus 51 ---------------~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fsp-d 114 (945)
......+.+|.+.|..|.|+.+ .+|++++.|.+|++|++...+++..+. |..-|+|++|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 0011235689999999999986 489999999999999999888887775 899999999999 8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccC--CCCCC
Q 002266 115 GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVA--PDIGS 192 (945)
Q Consensus 115 g~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~--~~~~~ 192 (945)
.++|++|+-||.|+||++.+.+.+.-.. -..-|++++|.|+|++.++|+.+|.+++|+....+......... .....
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 8999999999999999998877665444 44889999999999999999999999999998776655443221 11222
Q ss_pred CCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 002266 193 DPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ-PICFLSWSPNGKYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 193 ~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~-~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
+ ..|+.+.|.| +...+++.+.|..|+|||.++...+..+++.+.. .-....|+.||++|++++.|..|+||+.....
T Consensus 501 ~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 501 G-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred C-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 2 3799999998 4456888889999999999988888888874433 34567899999999999999999999986543
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-25 Score=251.45 Aligned_cols=273 Identities=20% Similarity=0.332 Sum_probs=232.5
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeeccc-
Q 002266 23 ILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITR- 101 (945)
Q Consensus 23 vafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~- 101 (945)
+.|+ ....|+++ ....|++|+..++. .......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..
T Consensus 183 ldWs-s~n~laVa--lg~~vylW~~~s~~-v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 183 LDWS-SANVLAVA--LGQSVYLWSASSGS-VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hhcc-cCCeEEEE--ecceEEEEecCCCc-eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 4677 44456655 35689999987763 3444444588999999999999999999999999999998888888888
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeee
Q 002266 102 FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV-LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGREL 180 (945)
Q Consensus 102 ~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~-l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i 180 (945)
|...|.+++|+ +..+.+|+.++.|.++|++....... +.+|...|+.+.|++++.+||+|+.|+.+.|||.......
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 89999999997 67899999999999999998765444 8899999999999999999999999999999999666666
Q ss_pred eeecccCCCCCCCCCCceEEEEcC-CCCEEEEEe--CCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEE--
Q 002266 181 HNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPG--LKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS-- 255 (945)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs--~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasg-- 255 (945)
..+. .|...|..++|+| ....||+|+ .|+.|++||..++..+..+. ....|+.|.|++..+-|+++
T Consensus 337 ~~~~-------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 337 FTFT-------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred EEEe-------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecC
Confidence 5554 4567889999999 677888865 58999999999999988876 46799999999988666654
Q ss_pred ECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 256 SLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 256 s~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
..++.|.||++.+...+.. .+|..+|..++|+|+|..+++|+.|.++++|++...
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3467899999988776665 789999999999999999999999999999999864
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=8.5e-26 Score=254.59 Aligned_cols=245 Identities=21% Similarity=0.238 Sum_probs=217.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc---cccccccccccceEEEEEecCC-CEEEEEEcCCcEEEEEc
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS---NLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVKLYKF 90 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~---~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl 90 (945)
||...|.++....+|.+|++++ .|.++++|.+.... .+.....+|.+.|.+++++..+ .+|+++|.|+++++|++
T Consensus 363 GH~e~vlSL~~~~~g~llat~s-KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGS-KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred CchhheeeeeecccCcEEEEec-CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 6779999999666787777775 99999999763322 3345567899999999998755 79999999999999999
Q ss_pred CCCeee---------eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEE
Q 002266 91 PGGEFQ---------TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLA 161 (945)
Q Consensus 91 ~~g~~~---------~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~La 161 (945)
...+.. .....|...|.+++++|+.++||+||.|.+.+||+++......++.+|...|.|+.|+|..+.++
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeE
Confidence 762211 12345888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeE
Q 002266 162 SIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPIC 241 (945)
Q Consensus 162 s~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~ 241 (945)
+++.|++|+||.+.+..++.++. +|...|..+.|-.+|+.|++++.||-|++|++++..++.++.. |...|.
T Consensus 522 T~SgD~TvKIW~is~fSClkT~e-------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~DrvW 593 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFE-------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HNDRVW 593 (775)
T ss_pred eccCCceEEEEEeccceeeeeec-------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-ccceeE
Confidence 99999999999999999999887 4568889999999999999999999999999999999999987 999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~ 268 (945)
+++.+|.+.++++|+.||.|.+|.=.+
T Consensus 594 aL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 594 ALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999999999999999996443
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=4.6e-25 Score=231.28 Aligned_cols=264 Identities=18% Similarity=0.247 Sum_probs=225.4
Q ss_pred ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 002266 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT 132 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 132 (945)
....+..|+.+|.+++.+|+.++++||+.|..-.+|++.+|.....+.+|+..|+++.|+.+|.+||+|+-+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE
Q 002266 133 IDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP 212 (945)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g 212 (945)
.++.....+...-..|.-+.|+|.+.+|++|+.||.+.+|.+.++...+.+. +|..++++=.|.|+|+.++++
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-------Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-------GHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-------CCCCCcccccccCCCceEEEE
Confidence 9998888887666788889999999999999999999999999875555554 466788899999999999999
Q ss_pred eCCCeEEEEECCCCcEEEeecCC--------------------------------------------------CCCCeEE
Q 002266 213 GLKNDVVMYDRDTAEKLFSLRGD--------------------------------------------------HVQPICF 242 (945)
Q Consensus 213 s~dg~I~vwD~~t~~~~~~~~~~--------------------------------------------------h~~~I~~ 242 (945)
..||+|++|+..++.+++.+.+. +...+.+
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 99999999999998887766521 0011122
Q ss_pred E---EEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCCC---CC
Q 002266 243 L---SWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMK---SP 316 (945)
Q Consensus 243 l---~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~~---~~ 316 (945)
+ .||..=.+.|+|+.||+|.|||+...++.....|...|+.+.|-+ ..+|++++.+|.|+.||..++..+. .+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 2 223334567889999999999999999989999999999999999 6799999999999999999988643 34
Q ss_pred CCCCCCCc
Q 002266 317 TEDIPSSR 324 (945)
Q Consensus 317 ~~~~~~~~ 324 (945)
...+.+..
T Consensus 368 ~~~Il~f~ 375 (399)
T KOG0296|consen 368 QMGILDFA 375 (399)
T ss_pred chheeEEE
Confidence 44444433
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=3e-26 Score=247.83 Aligned_cols=253 Identities=21% Similarity=0.361 Sum_probs=220.7
Q ss_pred cccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCC-CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 002266 52 NLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPG-GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKL 129 (945)
Q Consensus 52 ~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~-g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~i 129 (945)
.....+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|++++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45567889999999999999 889999999999999999876 8899999999999999999999999999999999999
Q ss_pred EEcCCCeEEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCE
Q 002266 130 INTIDGSIARVLKGHKGPVTGLAFDPNS-EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET 208 (945)
Q Consensus 130 wd~~~~~~~~~l~~h~~~V~~lafspdg-~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~ 208 (945)
||+++|.+...+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+.. |-+.+..+.|-++|++
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-------hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-------HLGAILDITFVDEGRR 356 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-------hhhheeeeEEccCCce
Confidence 9999999998887 45678999999988 7899999999999999999998777653 4577889999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee----ccC--CCCee
Q 002266 209 LAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR----QKF--DDRIC 282 (945)
Q Consensus 209 La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~----~~~--~~~V~ 282 (945)
+++.+.|+.++||+.+..-++..+...+.....++..+|++.++++-+.|+.|.||.+...-.... .+| .+.-+
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 999999999999999988776655443445677899999999999999999999998755433322 223 45678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 283 CMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 283 ~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
.+.|||||.+|++|+.||.+.+||-.+...
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 899999999999999999999999766543
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.5e-26 Score=238.97 Aligned_cols=284 Identities=16% Similarity=0.277 Sum_probs=233.4
Q ss_pred ccccCCCCCEEEEEECCCC-CEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEE
Q 002266 11 AHKCGNAASFCSILWDQQA-HHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYK 89 (945)
Q Consensus 11 aH~~gh~~~V~svafspdg-~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwd 89 (945)
+.. ||...|.|++=+|.. ..++++ +.||.|+|||+... .+..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~-gHrdGV~~lakhp~~ls~~aSG-s~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLD-GHRDGVSCLAKHPNKLSTVASG-SCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hcc-ccccccchhhcCcchhhhhhcc-ccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 334 788999999999988 445555 59999999998776 66888999999999999987 6788999999999999
Q ss_pred cCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC-EEEEEeCCCc
Q 002266 90 FPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE-YLASIDSIGT 168 (945)
Q Consensus 90 l~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~-~Las~s~Dg~ 168 (945)
+.. .....+. ....+..|.-+..+..++++|. .|.|||.....++..+.-....|.++.|+|... .|++|+.|+.
T Consensus 136 ~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 765 3444443 3455667777777778888875 489999999889999988889999999999654 6777789999
Q ss_pred EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC
Q 002266 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN 248 (945)
Q Consensus 169 I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd 248 (945)
|.+||++++.+++.+... ...+.++|+|.+-.+++++.|..++.||++...........|.+.|.++.|||.
T Consensus 212 IvLyD~R~~~Pl~KVi~~--------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILT--------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred eEEEecccCCccceeeee--------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 999999999887766432 234679999988889999999999999999876544444459999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 249 GKYMATSSLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 249 g~~Lasgs~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
|+-+++||.|.+|+||.+..+..... ..--..|.|+.|+.|.+++++|+.|++|++|.-...+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999999999999987654333 2234679999999999999999999999999865433
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.4e-24 Score=269.17 Aligned_cols=261 Identities=14% Similarity=0.245 Sum_probs=214.0
Q ss_pred CCeEEEEcCCCCccc----cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC----e----eeeecccCCCCE
Q 002266 39 ETTISIHDPLLPSNL----PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG----E----FQTNITRFTLPI 106 (945)
Q Consensus 39 dg~V~IWd~~~~~~~----~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g----~----~~~~l~~~~~~V 106 (945)
+|.+++|+....... ...+..|.+.|.+++|+|+|++|++|+.|+.|+||++... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 566777876543211 1123458999999999999999999999999999997532 1 111222 34678
Q ss_pred EEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeeeeeec
Q 002266 107 RVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHNLK 184 (945)
Q Consensus 107 ~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~i~~~~ 184 (945)
.+++|++ ++.+|++++.||.|++||+.++..+..+.+|...|++++|+| ++.+|++++.||.|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 478999999999999999999999999999999999999997 78899999999999999999888776664
Q ss_pred ccCCCCCCCCCCceEEEEc-CCCCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 002266 185 RVAPDIGSDPSSMNVLSWS-PDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQIL 262 (945)
Q Consensus 185 ~~~~~~~~~~~~i~~l~~s-pdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~ 262 (945)
. ...+.++.|+ ++|.+|++|+.|+.|++||+++.. .+..+.+ |...|.++.|. ++.+|++++.|+.|+
T Consensus 616 ~--------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 616 T--------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred c--------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 2 2457889995 479999999999999999998766 4555655 88999999997 788999999999999
Q ss_pred EEECCCC------eeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 263 IWDVGKK------LDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 263 IWD~~~~------~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
|||+... ..+.. .+|...+..++|+|++.+|++|+.||.|.+|+...+
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999743 23333 467788999999999999999999999999997644
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=2.9e-26 Score=237.60 Aligned_cols=236 Identities=17% Similarity=0.322 Sum_probs=207.3
Q ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE
Q 002266 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR 139 (945)
Q Consensus 60 h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 139 (945)
....|+|+.+. ...+++|..|.+|+|||..+..+...+.+|++.|.|+.|. .+.|++|+.|.+|+|||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 35679999875 4589999999999999999999999999999999999985 5699999999999999999999999
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEE
Q 002266 140 VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVV 219 (945)
Q Consensus 140 ~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~ 219 (945)
++..|...|..+.|+ +.++++++.|.++.+||+.+...+... ....+|...|+.+.|+ .+++++++.|.+|+
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~r----rVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLR----RVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHH----HHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 999999999999997 568999999999999999876532211 1123566778888885 56999999999999
Q ss_pred EEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEc
Q 002266 220 MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDV 298 (945)
Q Consensus 220 vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~ 298 (945)
+|++.+++.+.++.+ |...|-|+++ .|+++++|+.|.+|++||+..|.++.. .+|+.-|.++.|. .+.+++|+.
T Consensus 344 vW~~st~efvRtl~g-HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY 418 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY 418 (499)
T ss_pred EEeccceeeehhhhc-ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccc
Confidence 999999999999987 9899988876 799999999999999999999999887 6788899999996 458999999
Q ss_pred CCeEEEEecCCCCC
Q 002266 299 MGKYGVWESVVPSS 312 (945)
Q Consensus 299 DG~I~iWd~~~~~~ 312 (945)
||+|++||+.....
T Consensus 419 DGkikvWdl~aald 432 (499)
T KOG0281|consen 419 DGKIKVWDLQAALD 432 (499)
T ss_pred cceEEEEecccccC
Confidence 99999999986553
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.2e-25 Score=235.08 Aligned_cols=288 Identities=19% Similarity=0.242 Sum_probs=242.5
Q ss_pred cccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc----cc------------cc-cccccceEEEEEecC
Q 002266 10 EAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNL----PK------------IL-RHHRDGVTALALSPN 72 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~----~~------------~l-~~h~~~V~~la~spd 72 (945)
..+. .|..+|+||+++|++++.++++ .+++|.=|++.++... .. .- ..|...|.+++.++|
T Consensus 136 ~~~~-~H~~s~~~vals~d~~~~fsas-k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 136 RVIG-KHQLSVTSVALSPDDKRVFSAS-KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred eeec-cccCcceEEEeeccccceeecC-CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 3455 7889999999999999999997 9999999997765422 00 11 268888999999999
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEE
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLA 152 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~la 152 (945)
|+||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++.+|++.|.+|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee
Q 002266 153 FDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 153 fspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~ 232 (945)
...-++.+-+++.|+++++|++.....+. +. ++.+.+-|++|- +...+++|+.+|.|.+|++...+++++.
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~eesqli-fr-------g~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEESQLI-FR-------GGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccccceeEEEeccccceee-ee-------CCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEe
Confidence 88888888888899999999995433221 11 335667888887 4567999999999999999999998877
Q ss_pred cCCCC-----------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eeeeeccCCCCeeEEEEecCCCEEEE-E
Q 002266 233 RGDHV-----------QPICFLSWSPNGKYMATSSLDRQILIWDVGKK----LDIDRQKFDDRICCMAWKPIGNALAV-I 296 (945)
Q Consensus 233 ~~~h~-----------~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~----~~i~~~~~~~~V~~la~spdg~~Las-~ 296 (945)
...|. ..|++++..|...++|+|+.+|.|++|-+..+ .++......+.|++++|+++|+.|++ +
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 65442 26899999999999999999999999999877 44455667889999999999995555 5
Q ss_pred EcCCeEEEEecC
Q 002266 297 DVMGKYGVWESV 308 (945)
Q Consensus 297 s~DG~I~iWd~~ 308 (945)
+..-.+.-|-..
T Consensus 445 GkEhRlGRW~~~ 456 (479)
T KOG0299|consen 445 GKEHRLGRWWCL 456 (479)
T ss_pred ccccccceeeEe
Confidence 666677777654
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4e-25 Score=251.80 Aligned_cols=249 Identities=16% Similarity=0.277 Sum_probs=222.6
Q ss_pred ccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 002266 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS 136 (945)
Q Consensus 57 l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~ 136 (945)
+...+..|..++|+|...+++++-..|.|++||.+-+.++..+..|.++|+.+.|+|.+.++++|++|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34446789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC
Q 002266 137 IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN 216 (945)
Q Consensus 137 ~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg 216 (945)
++.++.+|-+.|+.+.|++.-.++++++.|.+|+||+..+++++..+. +|...|.|..|+|....+++++.|.
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-------GHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-------GHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-------cCceEEEeeccCCccceEEEecccc
Confidence 999999999999999999999999999999999999999999998876 5667899999999999999999999
Q ss_pred eEEEEECCCCc----------------------------EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002266 217 DVVMYDRDTAE----------------------------KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 217 ~I~vwD~~t~~----------------------------~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~ 268 (945)
+|+|||+...+ .+..+..+|...|+-++|+|.-.+|++|+.|..|++|.+..
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 99999975311 11222224899999999999999999999999999999865
Q ss_pred Ceee---eeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 269 KLDI---DRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 269 ~~~i---~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
.+.- ...+|...|.++-|+|..+.+++.+.|+.|+|||+.-...
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 4433 2378899999999999999999999999999999875443
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3e-24 Score=229.11 Aligned_cols=284 Identities=17% Similarity=0.257 Sum_probs=245.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
-....++++...|....++++| .|..+.++|.... +...++.+|...|+.+.++++...+++++.|..|+||......
T Consensus 217 t~~pgi~ald~~~s~~~ilTGG-~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILTGG-EDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred cCCCCeeEEeecCCCCcceecC-CCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 3456789988888877788876 9999999998776 6788999999999999999999999999999999999998888
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG--HKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~--h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
.......|..+|+.+..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||.+|.+|..||.|+||
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 8888889999999999999999999999999999999999987766553 23458999999999999999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYM 252 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~L 252 (945)
|+.++..+..|. .|.++|..++|+.+|-+|++++.|+.|++||++..+...++.......+.++.|.+.|.||
T Consensus 375 dlks~~~~a~Fp-------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 375 DLKSQTNVAKFP-------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred EcCCccccccCC-------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 999887666554 5678999999999999999999999999999998887777765455689999999999999
Q ss_pred EEEECCCeEEEEECCCC--eeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 253 ATSSLDRQILIWDVGKK--LDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 253 asgs~Dg~I~IWD~~~~--~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
+.++.|=.|++++-.+. ..+.. ..|.+..+++.|....++|++++.|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99988877777775443 33333 456678899999999999999999999888754
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=9e-25 Score=236.93 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=224.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccc---c-ccccccceEEEEEecCCCEEEEEEcCCcEEEEEc
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPK---I-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKF 90 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~---~-l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl 90 (945)
+|+..|.++++.|.|-.+++++ -|.+|++||......... . .......|.+++|++.|..|++.+.....+|+|-
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs-~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGS-LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred CCceEEEEeeecCCCceeeecc-ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 5778899999999999999987 999999999764332221 1 2234568999999999998888888889999996
Q ss_pred CCCeeee------------ecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-EEEEEe-----cCCCCEEEE
Q 002266 91 PGGEFQT------------NITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGS-IARVLK-----GHKGPVTGL 151 (945)
Q Consensus 91 ~~g~~~~------------~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~-~~~~l~-----~h~~~V~~l 151 (945)
...+... .-.+|...++|.+|+|.. ..+++++.||+++|||+.+.+ ....++ +..-+++.+
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 4433222 224678889999999954 578999999999999998754 223332 334578999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EE
Q 002266 152 AFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEK-LF 230 (945)
Q Consensus 152 afspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~-~~ 230 (945)
+|+++|+++|+|+.||.|.+|+.........+.. .........|++++|+++|++|++-+.|+.+++||++..+. +.
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 9999999999999999999999855432221111 11112234799999999999999999999999999998764 33
Q ss_pred eecC-CCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeeeeeccC-CCCeeEEEEecCCCEEEEEEcCCeE
Q 002266 231 SLRG-DHVQPICFLSWSPNGKYMATSSL------DRQILIWDVGKKLDIDRQKF-DDRICCMAWKPIGNALAVIDVMGKY 302 (945)
Q Consensus 231 ~~~~-~h~~~I~~l~fSpdg~~Lasgs~------Dg~I~IWD~~~~~~i~~~~~-~~~V~~la~spdg~~Las~s~DG~I 302 (945)
...+ ....+-+.++|||+.++|++|+. .|.+.+||..+...+..+.. ...|..+.|+|.=+.|++++.||.+
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCce
Confidence 3333 23346788999999999999864 47899999999888888665 4578899999999999999999999
Q ss_pred EEEe
Q 002266 303 GVWE 306 (945)
Q Consensus 303 ~iWd 306 (945)
++|=
T Consensus 482 ~vyY 485 (641)
T KOG0772|consen 482 HVYY 485 (641)
T ss_pred EEEE
Confidence 9874
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3e-25 Score=234.97 Aligned_cols=252 Identities=17% Similarity=0.267 Sum_probs=207.3
Q ss_pred ccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEE
Q 002266 7 KLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVK 86 (945)
Q Consensus 7 ~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~ 86 (945)
++..... ||..+|..+.||||.++|++|| .+..+++||+.++......-.+|...+.+++|.|||..+++|+.|+++.
T Consensus 260 kl~~tlv-gh~~~V~yi~wSPDdryLlaCg-~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 260 KLKKTLV-GHSQPVSYIMWSPDDRYLLACG-FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeeee-cccCceEEEEECCCCCeEEecC-chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3444445 7889999999999999999997 7778999999988544333344668899999999999999999999999
Q ss_pred EEEcCCCeeeeecccC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002266 87 LYKFPGGEFQTNITRF-TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 87 iwdl~~g~~~~~l~~~-~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~ 165 (945)
.||+.. .......+. ...|.+++..+||+++++.+.|..|++++.++........ ...+|++++.+.+++++++.-.
T Consensus 338 ~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 338 MWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred EecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcc
Confidence 999864 334444332 3469999999999999999999999999988765443333 4578999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEE
Q 002266 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLS 244 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~ 244 (945)
+..+.+||+.....+..+.++.. ...+-.-||-- +..++++|+.|+.|+||+..+++++..+.+ |...|++++
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq-----~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVs 489 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQ-----GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVS 489 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccc-----cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-CcceeeEEe
Confidence 99999999997777766655432 12344456655 568999999999999999999999999998 999999999
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCC
Q 002266 245 WSP-NGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 245 fSp-dg~~Lasgs~Dg~I~IWD~~~ 268 (945)
|+| +..++|+++.||+|+||-...
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 999 567899999999999998754
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=250.86 Aligned_cols=277 Identities=21% Similarity=0.326 Sum_probs=242.3
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~ 96 (945)
...|.+..|. +.+++++. .+.+|++|+...+..+...+.+|.+.|+++++..-+.+|++|+.|.++++||..+|++.
T Consensus 208 ~~~~~~~q~~--~~~~~~~s-~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGS-DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred cchhhhheee--cCeEEecC-CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 4668888887 55566664 89999999998886655569999999999999887789999999999999999999999
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t 176 (945)
..+.+|...|+++... ...+++|+.|.+|++|++.++..+..+.+|.++|+++.++ +.++++|+.||+|++||+.+
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 9999999999999875 4578888999999999999999999999999999999998 88999999999999999999
Q ss_pred CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEeecCCCCCCeEEEEEcCCCCEEEEE
Q 002266 177 GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA-EKLFSLRGDHVQPICFLSWSPNGKYMATS 255 (945)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~-~~~~~~~~~h~~~I~~l~fSpdg~~Lasg 255 (945)
++++..+.+ |...|.++.+.+. ..++.|+.|+.|++||+.+. +++..+.+ |..-+..+.+ .+++|+++
T Consensus 361 ~~cl~sl~g-------H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~-h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 361 GKCLKSLSG-------HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG-HTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred ceeeeeecC-------CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC-Cccccccccc--ccceeEec
Confidence 999988864 5678888877655 89999999999999999999 88888887 8777765554 67899999
Q ss_pred ECCCeEEEEECCCCeeeeeccC--CCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 256 SLDRQILIWDVGKKLDIDRQKF--DDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 256 s~Dg~I~IWD~~~~~~i~~~~~--~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
+.|+.|++||..++.++..... ...|+.+++. ...+++++.||.+.+||+......
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 9999999999999999888554 4778888876 468999999999999999877653
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-24 Score=220.37 Aligned_cols=272 Identities=15% Similarity=0.235 Sum_probs=223.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCC-ccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLP-SNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~-~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
-.+.|.+|+|||....++++|+.|++||+|++... ....+....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 34789999999977778877779999999998773 45566777899999999999999999999999999999999996
Q ss_pred eeeecccCCCCEEEEEEecCCC--EEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGS--MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~--~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
...+..|..+|.++.|-+... .|++|+.|.+|+.||++...++.++. ..+.++++.. ...+++++..++.|.+|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEE
Confidence 556778999999999998665 89999999999999999988888776 3466666654 34578888999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEeecCCCC---------CCeE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA--EKLFSLRGDHV---------QPIC 241 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~--~~~~~~~~~h~---------~~I~ 241 (945)
+++.+...... ... .....+++++..++....+.|+-+|.+.+..+..+ +.-+.|+. |. ..|+
T Consensus 182 nL~n~~te~k~--~~S---pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC-HR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 182 NLENPPTEFKR--IES---PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC-HRSTNSVNDDVYAVN 255 (347)
T ss_pred EcCCCcchhhh--hcC---cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE-eccCCCCCCceEEec
Confidence 99876433221 111 12345788999998888899999999999988876 33344443 32 3578
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEE
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVID 297 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s 297 (945)
+++|+|.-..|+|++.||++.+||-+....+.. ..+..+|++.+|+.+|.++|.+.
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 899999888999999999999999988766666 67899999999999999888763
No 75
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.7e-25 Score=237.88 Aligned_cols=288 Identities=17% Similarity=0.245 Sum_probs=243.8
Q ss_pred ccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc--ccccc--ccccceEEEEEecCCCEEEEEEcCCc
Q 002266 9 REAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNL--PKILR--HHRDGVTALALSPNSTCLASGSIDHS 84 (945)
Q Consensus 9 ~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~--~~~l~--~h~~~V~~la~spdg~~Lasgs~Dg~ 84 (945)
++.+...|..-|+++.+|...++++|+| .|.|+|||+...... ...+. ....-|+++...|||+.|++|++-.+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhVyTgG--kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcceeEecC--CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 3344446778999999999999999986 889999998654321 11111 23467899999999999999999999
Q ss_pred EEEEEcCCCee--eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEE
Q 002266 85 VKLYKFPGGEF--QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 85 V~iwdl~~g~~--~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las 162 (945)
|.|||+..... ...+.........++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.||..+++|..|.+
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec
Confidence 99999975432 2334444456778999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEE
Q 002266 163 IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF 242 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~ 242 (945)
|+-|.+|+.||++++..+..... .+.|.++..+|.+.+|++|-.++.+.|...... ..+.+.. |...|.+
T Consensus 569 GGlDntvRcWDlregrqlqqhdF--------~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl-heScVLS 638 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQHDF--------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL-HESCVLS 638 (705)
T ss_pred CCCccceeehhhhhhhhhhhhhh--------hhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc-cccEEEE
Confidence 99999999999999876654321 356788999999999999999999999887644 3344544 8999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 243 LSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
+.|++.|+++++.+.|..+..|.+.-+..+...+-...|.++..+-+.++|++|+.|..-.||++.
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 999999999999999999999999999888888888899999999999999999999999998764
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=249.68 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=201.1
Q ss_pred ccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC--------------------------------C-------------
Q 002266 59 HHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG--------------------------------G------------- 93 (945)
Q Consensus 59 ~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~--------------------------------g------------- 93 (945)
.|.+.|+++.|++||+|||+||.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999998754 0
Q ss_pred ---------------eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CC
Q 002266 94 ---------------EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NS 157 (945)
Q Consensus 94 ---------------~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg 157 (945)
++...+.+|.+.|.+|.|+.+ .+|++++.|.+|++|++....++..+. |...|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 112334678889999999976 689999999999999999999998887 999999999999 78
Q ss_pred CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC--
Q 002266 158 EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD-- 235 (945)
Q Consensus 158 ~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~-- 235 (945)
+|+++|+-||.|+||++...+.+.-... ...|++++|.|+|++.++|+.+|.+++|++...+....+.-.
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDL--------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhh--------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 8999999999999999987766543322 256899999999999999999999999999877654433210
Q ss_pred -----CCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeeeecc-C--CCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 236 -----HVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKKLDIDRQK-F--DDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 236 -----h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~~~i~~~~-~--~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
....|+.++|.|. ...|++.+.|..|+|||..+..++..++ + ...-....|+.||++|++++.|..|+||+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 1237999999984 3457777789999999998887777644 2 23345678999999999999999999999
Q ss_pred cCCCC
Q 002266 307 SVVPS 311 (945)
Q Consensus 307 ~~~~~ 311 (945)
...+.
T Consensus 575 ~~~~~ 579 (712)
T KOG0283|consen 575 NDSFN 579 (712)
T ss_pred CCCCc
Confidence 86544
No 77
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=245.53 Aligned_cols=251 Identities=12% Similarity=0.131 Sum_probs=193.4
Q ss_pred EcCCCeEEEEcCCCCccccccccccccceEEEEEecC-CCEEEEEEcCCcEEEEEcCCCe--------eeeecccCCCCE
Q 002266 36 SSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGE--------FQTNITRFTLPI 106 (945)
Q Consensus 36 g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~~g~--------~~~~l~~~~~~V 106 (945)
|+.++.|++|+.... .....+.+|.+.|.+++|+|+ +.+|++|+.||+|+||++.++. ....+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 446788999987654 445677899999999999996 7899999999999999997642 233567889999
Q ss_pred EEEEEecCCCE-EEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecc
Q 002266 107 RVLAFNKSGSM-LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKR 185 (945)
Q Consensus 107 ~~l~fspdg~~-Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~ 185 (945)
.+++|+|++.. |++++.|+.|+|||++++.....+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+..
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999998876 4788999999999999998777765 668899999999999999999999999999999988877654
Q ss_pred cCCCCCCCCCCceEEEEcCCCCEEEEEeCCC----eEEEEECCC-CcEEEeecCC-CCCCeEEEEEcCCCCEEEEEECCC
Q 002266 186 VAPDIGSDPSSMNVLSWSPDGETLAVPGLKN----DVVMYDRDT-AEKLFSLRGD-HVQPICFLSWSPNGKYMATSSLDR 259 (945)
Q Consensus 186 ~~~~~~~~~~~i~~l~~spdg~~La~gs~dg----~I~vwD~~t-~~~~~~~~~~-h~~~I~~l~fSpdg~~Lasgs~Dg 259 (945)
+..... ...+....|++++.+|++++.++ .|+|||++. .+++..+... +.+.+......++|.++++|+.|+
T Consensus 208 H~g~~~--s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 208 HDGGKN--TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ccCCce--eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 321110 01122334568999999987764 799999995 4555544321 223333333455699999999999
Q ss_pred eEEEEECCCCeeeee--ccCCCCeeEEEEecCC
Q 002266 260 QILIWDVGKKLDIDR--QKFDDRICCMAWKPIG 290 (945)
Q Consensus 260 ~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg 290 (945)
.|++|++..+..... ..+..++.+++|.|+.
T Consensus 286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 999999987754333 4456788999999964
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.8e-25 Score=218.82 Aligned_cols=244 Identities=17% Similarity=0.295 Sum_probs=208.8
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCCCee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
...+..++|++.....+.+++.||.++|||...+......++.|...|.++.|++ ++..+++++.|++|++|+...+..
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 4678999999987766655568999999998777778888999999999999999 667788889999999999998888
Q ss_pred eeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 002266 96 QTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwD 173 (945)
+.++.+|...|...+|+| ..+.+++++.|+.+++||++.......+..|...|.++.|+. +...|++++.|+.|++||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 999999999999999999 678999999999999999987655555889999999999998 667899999999999999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-CCCE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP-NGKY 251 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp-dg~~ 251 (945)
++.-+. +...+.+|.-.|..+.||| ....|++++.|-+++|||.............|..-+..+.||+ ++.+
T Consensus 220 ir~~r~------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~ 293 (311)
T KOG0277|consen 220 IRNLRT------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQ 293 (311)
T ss_pred hhhccc------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCce
Confidence 987542 1223346778899999999 5678999999999999999866544333334888999999998 6789
Q ss_pred EEEEECCCeEEEEEC
Q 002266 252 MATSSLDRQILIWDV 266 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~ 266 (945)
+|+++.|+.++||+.
T Consensus 294 vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 294 VASTGWDELLYVWNP 308 (311)
T ss_pred eeecccccceeeecc
Confidence 999999999999984
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-24 Score=240.19 Aligned_cols=240 Identities=22% Similarity=0.366 Sum_probs=213.5
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccc-cccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRH-HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~-h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
...|+++.|+++|.+|+++. .+|.|.|||...... ...+.+ |...|-+++|. +..+.+|+.++.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~-~~g~v~iwD~~~~k~-~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGT-SDGTVQIWDVKEQKK-TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEee-cCCeEEEEehhhccc-cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 68899999999999999997 999999999887744 445555 99999999998 56899999999999999988765
Q ss_pred eee-cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCEEEEEe--CCCcEEE
Q 002266 96 QTN-ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASID--SIGTVIY 171 (945)
Q Consensus 96 ~~~-l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~Las~s--~Dg~I~i 171 (945)
... +..|...|..+.|++++.++|+|+.|+.+.|||.....+...+..|...|..++|+| ...+||+|+ .|++|++
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 544 788999999999999999999999999999999988888999999999999999999 567888874 5899999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE--eCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCC
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP--GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNG 249 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g--s~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg 249 (945)
||..++..+..+.. .+.|+.+.|++..+-|+++ ..++.|.||+..+.+.+..+.+ |...|..+++||+|
T Consensus 373 wn~~~g~~i~~vdt--------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~~RVl~la~SPdg 443 (484)
T KOG0305|consen 373 WNTNTGARIDSVDT--------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HTSRVLYLALSPDG 443 (484)
T ss_pred EEcCCCcEeccccc--------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-CcceeEEEEECCCC
Confidence 99999988877643 4678999999988777664 4577899999999999998887 99999999999999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q 002266 250 KYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 250 ~~Lasgs~Dg~I~IWD~~~~ 269 (945)
..+++|+.|.++++|++-..
T Consensus 444 ~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 444 ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CEEEEecccCcEEeccccCC
Confidence 99999999999999998664
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=236.94 Aligned_cols=286 Identities=22% Similarity=0.277 Sum_probs=239.7
Q ss_pred CCEEEEEECCCCCE---EEEEEcCCCeEEEEcCCCCccc--------cccccccccceEEEEEecCCCEEEEEEcCCcEE
Q 002266 18 ASFCSILWDQQAHH---LVTASSSETTISIHDPLLPSNL--------PKILRHHRDGVTALALSPNSTCLASGSIDHSVK 86 (945)
Q Consensus 18 ~~V~svafspdg~~---L~t~g~~dg~V~IWd~~~~~~~--------~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~ 86 (945)
..|-++.|.|.+.. |++ -.++++.+|.+...... ...+.+|...|++++++.+...+++|+ .+.|+
T Consensus 321 ~kiks~dv~~~~~~~~~lv~--l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Sik 397 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVL--LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIK 397 (888)
T ss_pred hheeEEEEEecCCcceeEEE--eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEE
Confidence 34888888876643 343 25778888876541111 134668999999999999987777765 47899
Q ss_pred EEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 87 LYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 87 iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
+|+..+.+++.++.. ..+.+..|.|.++++++|...|.+.+||+.....+.+.++|.+.|++++.+||++.+++++.|
T Consensus 398 iWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred EEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC
Confidence 999999999988874 388999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCC-----eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeE
Q 002266 167 GTVIYWELQSG-----RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPIC 241 (945)
Q Consensus 167 g~I~iwDl~t~-----~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~ 241 (945)
.+|++||..-- ...+.+.......-.-...+.|+.+||||++|+++-.|++|+||-+++.+....+.+ |.-||.
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~ 554 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVL 554 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-ccccee
Confidence 99999997421 111111111111112346789999999999999999999999999999998888888 999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
++..|||+++++|||.|..|+||-++-|.+-.. +.|.+.|.++.|-|....+.+++.||.|+-||-.-
T Consensus 555 smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 999999999999999999999999999988776 78999999999999999999999999999998543
No 81
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.2e-23 Score=242.94 Aligned_cols=228 Identities=17% Similarity=0.266 Sum_probs=188.0
Q ss_pred CCCCCEEEEEECC-CCCEEEEEEcCCCeEEEEcCCCCc------cccccccccccceEEEEEecCC-CEEEEEEcCCcEE
Q 002266 15 GNAASFCSILWDQ-QAHHLVTASSSETTISIHDPLLPS------NLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVK 86 (945)
Q Consensus 15 gh~~~V~svafsp-dg~~L~t~g~~dg~V~IWd~~~~~------~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~ 86 (945)
||.+.|++++|+| ++.+|++++ .|++|+|||+.... .....+.+|...|.+++|+|++ .+|++|+.|++|+
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS-~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTAS-EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEe-CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 6779999999999 788888886 99999999986542 2345678899999999999975 7999999999999
Q ss_pred EEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCC-EEEEEEccCCCEEEEEe-
Q 002266 87 LYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP-VTGLAFDPNSEYLASID- 164 (945)
Q Consensus 87 iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~-V~~lafspdg~~Las~s- 164 (945)
|||+.+++....+..|...|.+++|+|+|.+|++++.|+.|++||++++..+..+.+|.+. +..+.|.+++..+++++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 9999999988888889999999999999999999999999999999999998889888765 45678999888877654
Q ss_pred ---CCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEeecCCCCCCe
Q 002266 165 ---SIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG-LKNDVVMYDRDTAEKLFSLRGDHVQPI 240 (945)
Q Consensus 165 ---~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs-~dg~I~vwD~~t~~~~~~~~~~h~~~I 240 (945)
.|+.|++||+++.......... .....+....|++++++|++++ .|+.|++||+.+++........+..++
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~-----d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDL-----DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEecc-----CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 4789999999875432221110 1123455678999999999887 499999999999887766654456678
Q ss_pred EEEEEcCC
Q 002266 241 CFLSWSPN 248 (945)
Q Consensus 241 ~~l~fSpd 248 (945)
..++|.|.
T Consensus 307 ~g~~~~pk 314 (493)
T PTZ00421 307 KGLCMMPK 314 (493)
T ss_pred cceEeccc
Confidence 88888885
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=215.76 Aligned_cols=244 Identities=22% Similarity=0.302 Sum_probs=205.0
Q ss_pred ccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCC--EEEEEEcCCcEE
Q 002266 9 REAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST--CLASGSIDHSVK 86 (945)
Q Consensus 9 ~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~--~Lasgs~Dg~V~ 86 (945)
..+|. .|.++|++++. +|.++++++ .|-+|+|||..... ....+..|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 36 lF~~~-aH~~sitavAV--s~~~~aSGs-sDetI~IYDm~k~~-qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFS-AHAGSITALAV--SGPYVASGS-SDETIHIYDMRKRK-QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccc-ccccceeEEEe--cceeEeccC-CCCcEEEEeccchh-hhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 45566 78899999999 699999987 89999999998764 4566778999999999999664 899999999999
Q ss_pred EEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 87 LYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 87 iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
+|+.....++..+..|.+.|+.++++|.|++.++.+.|+.++.||+.+|+....+.- ...-+.+.|+|.|.+++.+..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence 999999999999999999999999999999999999999999999999886655542 2333459999999999888875
Q ss_pred CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEE-
Q 002266 167 GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSW- 245 (945)
Q Consensus 167 g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~f- 245 (945)
.|-||.+.+......+... ..+.++.|. ++.+|++|+.++.|.+||..+..+...+.. |...|.++.+
T Consensus 190 -~i~i~q~d~A~v~~~i~~~--------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~~RVK~i~~~ 258 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENP--------KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-HENRVKDIASY 258 (362)
T ss_pred -EEEEEecccHhHhhhhhcc--------ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec-chhheeeeEEE
Confidence 5889988776655444321 234455554 678899999999999999999888888887 9999999984
Q ss_pred -cCCCCEEEEEECCCeEEEEECCCC
Q 002266 246 -SPNGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 246 -Spdg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.|.+.||++++.||.|+|||++..
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999775
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.3e-23 Score=211.89 Aligned_cols=250 Identities=19% Similarity=0.270 Sum_probs=213.5
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEEC--CCcEEEEEc
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD--DEGIKLINT 132 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~iwd~ 132 (945)
+.+....+.|.++.|+++|.+|++++.|.++++||..+++...++..+.-.+..++|....+.++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 345556788999999999999999999999999999999999999988889999999888787877776 889999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE
Q 002266 133 IDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP 212 (945)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g 212 (945)
.+.+.++.+.+|...|.+|+.+|-+..+++++.|++|++||++..++...+... .-..++|.|.|-++|++
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---------~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---------GRPIAAFDPEGLIFALA 158 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---------CCcceeECCCCcEEEEe
Confidence 999999999999999999999999999999999999999999987766555432 22358999999999999
Q ss_pred eCCCeEEEEECCCCc--EE--EeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC---CC-CeeEE
Q 002266 213 GLKNDVVMYDRDTAE--KL--FSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF---DD-RICCM 284 (945)
Q Consensus 213 s~dg~I~vwD~~t~~--~~--~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~---~~-~V~~l 284 (945)
.....|++||++... +. ..+........+.+.|||||++|+.++..+.+++.|.-+|..+..... .. -....
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 888899999998752 33 333323467889999999999999999999999999999987776432 12 22578
Q ss_pred EEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 285 AWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 285 a~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
+|.|+++++++|+.||+|.+|++.++...
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 89999999999999999999999877653
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.1e-24 Score=215.66 Aligned_cols=245 Identities=22% Similarity=0.350 Sum_probs=213.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.+.|++.+++.+...-++++ .|-+-+|||..++.. ...+ .|..-|.+++|+.|.++|++|+.+..++|||+...+
T Consensus 57 ghkgavw~~~l~~na~~aasaa-adftakvw~a~tgde-lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAA-ADFTAKVWDAVTGDE-LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred ccCcceeeeecCchhhhhhhhc-ccchhhhhhhhhhhh-hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 6779999999998887777765 899999999888744 3333 477889999999999999999999999999987643
Q ss_pred -eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 95 -FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 95 -~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
....+.+|++.|+.+.|....+.|++.++|++|++||.+++..++++. ...+|+++.++++|.+|.++. .+.|.+||
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwd 211 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWD 211 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEec
Confidence 456788999999999999999999999999999999999999999887 568899999999999877664 57899999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
..+-..+..++. +..|.+.+++|+...+++|+.|..++.||..+++.+..+...|.++|.++.|+|+|...|
T Consensus 212 aksf~~lKs~k~--------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 212 AKSFGLLKSYKM--------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred cccccceeeccC--------ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceee
Confidence 998887777654 355778899999999999999999999999999998887445999999999999999999
Q ss_pred EEECCCeEEEEECCCCeee
Q 002266 254 TSSLDRQILIWDVGKKLDI 272 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~i 272 (945)
+|+.||+|+||.+..++..
T Consensus 284 sGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEEEEecCCCch
Confidence 9999999999988765443
No 85
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-23 Score=223.17 Aligned_cols=283 Identities=17% Similarity=0.233 Sum_probs=233.4
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc-ccccccccccceEEEEEecCCC-EEEEEEcCCcEEEEEcCCCe
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN-LPKILRHHRDGVTALALSPNST-CLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~-~~~~l~~h~~~V~~la~spdg~-~Lasgs~Dg~V~iwdl~~g~ 94 (945)
.+.|++|.|+|....|+++| .|++++||.+..... ..+.+.....+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG-~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAG-LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEec-CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 48899999999999999998 999999998764432 2333444567999999999998 89999999999999998877
Q ss_pred eeee--cccC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 95 FQTN--ITRF-TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 95 ~~~~--l~~~-~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
.... ..++ ...+.....++++++|+..|..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5432 2222 3357788899999999999999999999999999888877 5688999999999999999999999999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCC------CcEEEeecCCCCCCeEEEEE
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT------AEKLFSLRGDHVQPICFLSW 245 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t------~~~~~~~~~~h~~~I~~l~f 245 (945)
||++...+++.+.... .-.-+++|.+++|.+||+|+..|.|.|||..+ .+++..+.. -...|++++|
T Consensus 371 ~nl~~~~~~~rf~D~G------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Ltt~Itsl~F 443 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDG------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LTTAITSLQF 443 (514)
T ss_pred EecCCcceEEEEeecC------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hheeeeeeee
Confidence 9999998888875421 11235688889999999999999999999653 345666554 6678999999
Q ss_pred cCCCCEEEEEEC--CCeEEEEECCCCeeeeeccC----CCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 246 SPNGKYMATSSL--DRQILIWDVGKKLDIDRQKF----DDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 246 Spdg~~Lasgs~--Dg~I~IWD~~~~~~i~~~~~----~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
+|++.+||.+|. +..+++-.+.+..+...+.. -+.|+|++|+|.+-+||+|..+|.+.+|.+.
T Consensus 444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999988874 67899999888766655332 3569999999999999999999999999874
No 86
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=212.24 Aligned_cols=281 Identities=17% Similarity=0.232 Sum_probs=218.4
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI 99 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l 99 (945)
-.|+.|++.|.+||+|+ .+|.|.|||..+. ....++.+|..+|++++||+||++|+|++.|..|.+||+..|.+...+
T Consensus 26 a~~~~Fs~~G~~lAvGc-~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC-ANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeec-cCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 68899999999999998 9999999999887 578889999999999999999999999999999999999999977776
Q ss_pred ccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEEec-C----CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 100 TRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVLKG-H----KGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 100 ~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l~~-h----~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
. +..+|+.+.|+|.. +.+++.--+..-.+.++.++.. ..+.. . ...-.+..|++.|+++++|...|.+.++|
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 5 78999999999944 3333333344455666654321 11211 1 11223446899999999999999999999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC-------cE--EEeecC-CCCCCeEEE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA-------EK--LFSLRG-DHVQPICFL 243 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~-------~~--~~~~~~-~h~~~I~~l 243 (945)
..+.+++..+.... ...|..+.++..|+.|++-+.|..|+.|++..- ++ .+.+.. -....-.++
T Consensus 182 a~t~e~vas~rits------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 182 AETLECVASFRITS------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred cchheeeeeeeech------heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99998887775422 245778999999999999999999999998631 11 111111 012345678
Q ss_pred EEcCCCCEEEEEEC-CCeEEEEECCCCeeeeecc-CC-CCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 244 SWSPNGKYMATSSL-DRQILIWDVGKKLDIDRQK-FD-DRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 244 ~fSpdg~~Lasgs~-Dg~I~IWD~~~~~~i~~~~-~~-~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
+||.+|.|+++++. -..++||....|.++.... .. .....+.|+|-...+++. ..|.+++|......
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 99999999988874 4679999999999888743 33 567899999998888887 88999999876543
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.2e-22 Score=209.61 Aligned_cols=267 Identities=17% Similarity=0.266 Sum_probs=217.8
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
..|.+|.|+|.+..|++++ .||.+++|++... .....-.|..++.+++|.++ ..+++|+.||.|+.+|+.++.. .
T Consensus 14 d~IS~v~f~~~~~~LLvss-WDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSS-WDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred hceeeEEEcCcCCcEEEEe-ccCcEEEEeccch--hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-e
Confidence 6799999999999999887 9999999998765 33444568899999999874 5789999999999999988774 4
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG 177 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~ 177 (945)
.+..|..+|+|+.+++-...+++|+.|++|++||.+.......+. ....|.++... |+.|++|+.+..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 566799999999999988899999999999999998755555554 33478888765 778999999999999999987
Q ss_pred eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEeecCCCC---------CCeEEEE
Q 002266 178 RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA----EKLFSLRGDHV---------QPICFLS 244 (945)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~----~~~~~~~~~h~---------~~I~~l~ 244 (945)
....+.. ...-...+.++++-|++.-+++++-+|.|.+=.++.. +..+.|+. |. .+|++++
T Consensus 166 ~~~~q~r-----eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC-Hr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 166 DEPFQRR-----ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC-HRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cchhhhc-----cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe-eecccCCceEEEEeceeE
Confidence 5443221 1122356789999999888999999999988766654 33444443 32 3799999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEc
Q 002266 245 WSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDV 298 (945)
Q Consensus 245 fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~ 298 (945)
|+|-...||||+.||.|.+||+.+.+.+.. .+....|.+++|+.+|..||+++.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999989999999999999999998877766 445677999999999999999864
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.8e-23 Score=223.60 Aligned_cols=237 Identities=19% Similarity=0.261 Sum_probs=205.6
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCCCee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
...|++++|-.||++|++|. ..|.|+|+|..+ ......+..|+.+|..+.|+| ++..|++|+.|+.+++||+.+...
T Consensus 68 k~~v~s~~fR~DG~LlaaGD-~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGD-ESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred ccceeEEEeecCCeEEEccC-CcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 36799999999999888875 999999999544 356788899999999999999 557788899999999999999887
Q ss_pred eeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCC-eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 96 QTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDG-SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~-~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
...+.+|+..|+|.+|+| ++..+++|+.||.|++||++.. ..+..+. |..+|..+.+-|.|..+++++. ..|+|||
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 678999999999999999 4568999999999999999987 5555554 9999999999999999999875 5799999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
+.+|....... ..|...|+|+++..++..|++++.|+.|++||+.+++.+..+. ..++|.+++.+|++..++
T Consensus 224 l~~G~qll~~~------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 224 LTTGGQLLTSM------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred ecCCceehhhh------hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEE
Confidence 99765433221 1366889999999999999999999999999999999988886 578999999999999999
Q ss_pred EEECCCeEEEEE
Q 002266 254 TSSLDRQILIWD 265 (945)
Q Consensus 254 sgs~Dg~I~IWD 265 (945)
.|..+|.+.+-+
T Consensus 296 iGmsnGlv~~rr 307 (487)
T KOG0310|consen 296 IGMSNGLVSIRR 307 (487)
T ss_pred Eecccceeeeeh
Confidence 999999887763
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=209.78 Aligned_cols=242 Identities=24% Similarity=0.354 Sum_probs=207.0
Q ss_pred cccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC--EEEEEECCCcEEEEEcC
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS--MLAAAGDDEGIKLINTI 133 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~--~Lasgs~Dg~I~iwd~~ 133 (945)
.+..|.++|++++.+ +.++|+|+.|-+|+|||+........+..|.+.|+++.|.++-. .|++|++||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 456799999999885 78999999999999999999988889999999999999998765 89999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe
Q 002266 134 DGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG 213 (945)
Q Consensus 134 ~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs 213 (945)
....+..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-+|+.-...... ...+.+.|+|.|.+++++.
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--------~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--------NKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--------CcceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999998765554321 1224499999999999987
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEE--ecCC
Q 002266 214 LKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAW--KPIG 290 (945)
Q Consensus 214 ~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~--spdg 290 (945)
...|-+|.+.+......+.. ...+.++.|- ++.+|++|+.|+.|.+||.++..++.. ..|..+|-++.+ .|++
T Consensus 188 -~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 188 -RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred -ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 45799999988776655543 2456666665 567899999999999999998777665 678999999985 5677
Q ss_pred CEEEEEEcCCeEEEEecCCCC
Q 002266 291 NALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 291 ~~Las~s~DG~I~iWd~~~~~ 311 (945)
.+|++++.||.|++||+....
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eEEEEeccCceEEEEEccccc
Confidence 899999999999999987654
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=208.06 Aligned_cols=249 Identities=18% Similarity=0.304 Sum_probs=216.8
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee--ecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEE
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT--NITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~--~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd 131 (945)
..+.+|...|.+++|+.+|..|++|+.|+++.+|++....... ...+|...|-.++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998765443 3457888999999998 567899999999999999
Q ss_pred cCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE
Q 002266 132 TIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV 211 (945)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~ 211 (945)
++.+++........+.| -+.|+|+|++++++..|..|.+.|.++.+.....+. ...++.++|+-++.+++.
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~--------~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF--------KFEVNEISWNNSNDLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc--------cceeeeeeecCCCCEEEE
Confidence 99999998887655555 489999999999999999999999998876655432 234677999988888888
Q ss_pred EeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCC
Q 002266 212 PGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIG 290 (945)
Q Consensus 212 gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg 290 (945)
.+..|.|.|......+++..+.. |.....++.|+|+|+|||+|+.|..+.+||++.-.++.. ..+.-+|..+.|+.+|
T Consensus 165 t~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG 243 (313)
T ss_pred ecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence 77789999999999999999987 999999999999999999999999999999998777666 4577899999999999
Q ss_pred CEEEEEEcCCeEEEEecCCCCCC
Q 002266 291 NALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 291 ~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
++||+++.|-.|-|=++.++..+
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred ceeeccCccceEEeEecccCCeE
Confidence 99999999999988888887764
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=6.5e-23 Score=207.08 Aligned_cols=237 Identities=18% Similarity=0.225 Sum_probs=211.8
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI 133 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~ 133 (945)
+..+.+|..+++.|.++.+|.+|++|+.|.++.+|-..+|+.+.++.+|.+.|+|+....+.+++++|+.|.++++||+.
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 34578999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEccCCe-------eeeeecccCCCCCCCCCCceEEE
Q 002266 134 DGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-----IGTVIYWELQSGR-------ELHNLKRVAPDIGSDPSSMNVLS 201 (945)
Q Consensus 134 ~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-----Dg~I~iwDl~t~~-------~i~~~~~~~~~~~~~~~~i~~l~ 201 (945)
+|+.+..++ ...+|..+.|+++|++++.+.. .+.|.++|++... +...+. .+.+.++.+-
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-------t~~skit~a~ 154 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-------TPDSKITSAL 154 (327)
T ss_pred CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-------CCccceeeee
Confidence 999998887 5688999999999998877654 3579999998432 233332 3447789999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCe
Q 002266 202 WSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRI 281 (945)
Q Consensus 202 ~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V 281 (945)
|.|-+++|++|..+|.|.+||.+++..+......|...|+.++++|+..++++++.|.+-++||+.+-.++.......+|
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc
Confidence 99999999999999999999999997776665569999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEEc
Q 002266 282 CCMAWKPIGNALAVIDV 298 (945)
Q Consensus 282 ~~la~spdg~~Las~s~ 298 (945)
++.+++|....++.|+.
T Consensus 235 N~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGG 251 (327)
T ss_pred cceecccccceEEecCC
Confidence 99999998888777654
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.5e-23 Score=219.51 Aligned_cols=241 Identities=23% Similarity=0.386 Sum_probs=217.2
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL 141 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l 141 (945)
..+.++...+....+++|+.|..+.++|...++.+..+.+|...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46788888887789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEE
Q 002266 142 KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMY 221 (945)
Q Consensus 142 ~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vw 221 (945)
..|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .....+++.+|||||..|.+|+.|+.|+||
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-----~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-----TSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----cccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 999999999999999999999999999999999999877665421 123457899999999999999999999999
Q ss_pred ECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCC--CCeeEEEEecCCCEEEEEEcC
Q 002266 222 DRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFD--DRICCMAWKPIGNALAVIDVM 299 (945)
Q Consensus 222 D~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~--~~V~~la~spdg~~Las~s~D 299 (945)
|+.+...+..|.+ |.++|..++|+.+|-|||+++.|+.|++||++..+....+... ..+.++.|.+.|.+|+.++.+
T Consensus 375 dlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 375 DLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred EcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999999999988 9999999999999999999999999999999988776665443 369999999999999999888
Q ss_pred CeEEEEecC
Q 002266 300 GKYGVWESV 308 (945)
Q Consensus 300 G~I~iWd~~ 308 (945)
=+|++++-.
T Consensus 454 l~Vy~~~k~ 462 (506)
T KOG0289|consen 454 LQVYICKKK 462 (506)
T ss_pred eEEEEEecc
Confidence 777777644
No 93
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=4.3e-22 Score=233.19 Aligned_cols=223 Identities=16% Similarity=0.253 Sum_probs=180.7
Q ss_pred EEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCe--------EEEEEecCCCCEE
Q 002266 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDGS--------IARVLKGHKGPVT 149 (945)
Q Consensus 79 gs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~--------~~~~l~~h~~~V~ 149 (945)
|+.++.|++|+......+..+.+|..+|.+++|+|+ +.+|++|+.|+.|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566788999998777777888999999999999996 7899999999999999997642 3446788999999
Q ss_pred EEEEccCCCE-EEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 002266 150 GLAFDPNSEY-LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEK 228 (945)
Q Consensus 150 ~lafspdg~~-Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~ 228 (945)
+++|+|++.. |++++.|++|+|||+++++.+..+. +...+.+++|+|+|.+|++++.|+.|+|||+++++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 9999998875 5788999999999999987665543 124689999999999999999999999999999999
Q ss_pred EEeecCCCCCCeEE-----EEEcCCCCEEEEEECCC----eEEEEECCC-CeeeeeccCCCC---eeEEEEecCCCEEEE
Q 002266 229 LFSLRGDHVQPICF-----LSWSPNGKYMATSSLDR----QILIWDVGK-KLDIDRQKFDDR---ICCMAWKPIGNALAV 295 (945)
Q Consensus 229 ~~~~~~~h~~~I~~-----l~fSpdg~~Lasgs~Dg----~I~IWD~~~-~~~i~~~~~~~~---V~~la~spdg~~Las 295 (945)
+..+.+ |.+.+.. ..|++++.+|++++.|+ .|+|||++. ..++....+... +......++|.++++
T Consensus 202 i~tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 202 ASSFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 888876 7665433 33568999999988774 799999985 555555444332 223333445888999
Q ss_pred EEcCCeEEEEecCCC
Q 002266 296 IDVMGKYGVWESVVP 310 (945)
Q Consensus 296 ~s~DG~I~iWd~~~~ 310 (945)
|..|+.|++|++..+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 999999999998654
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=230.59 Aligned_cols=282 Identities=21% Similarity=0.324 Sum_probs=237.9
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee--
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF-- 95 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~-- 95 (945)
+.|++++|..||..+.++|...|.+.+||++.......+...|.+.|..+.|.|....|++++.|+.+++|-.+++.-
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 889999999999998888778899999999877555555557888888888888777888888777776663321100
Q ss_pred ------------------------------------------------e-e------------------------e----
Q 002266 96 ------------------------------------------------Q-T------------------------N---- 98 (945)
Q Consensus 96 ------------------------------------------------~-~------------------------~---- 98 (945)
. . .
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 0 0 0
Q ss_pred ---------------------------------------cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE
Q 002266 99 ---------------------------------------ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR 139 (945)
Q Consensus 99 ---------------------------------------l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 139 (945)
+......+++++.++.|++.+.|+..|.|-+|++.+|-...
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~ 484 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK 484 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec
Confidence 00011346788889999999999999999999999998877
Q ss_pred EE---ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC
Q 002266 140 VL---KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN 216 (945)
Q Consensus 140 ~l---~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg 216 (945)
.+ ..|.++|++++.+.-++.+++++.+|.+.+||......+..+.. ...+.++..+.....++++..+-
T Consensus 485 sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--------~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 485 SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--------GSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc--------CCCcceeeeeehhhhhhhhcCce
Confidence 77 58999999999999999999999999999999988876666542 34567788888888899999999
Q ss_pred eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEE
Q 002266 217 DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVI 296 (945)
Q Consensus 217 ~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~ 296 (945)
.|+++|..+.+.++.+.+ |...|++++|||||++|++++.|++|++||+.++.++.......+.+++.|+|+|.+||+.
T Consensus 557 ~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC-CeEEEEecC
Q 002266 297 DVM-GKYGVWESV 308 (945)
Q Consensus 297 s~D-G~I~iWd~~ 308 (945)
..| .-|++|...
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 988 569999754
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.5e-23 Score=211.66 Aligned_cols=286 Identities=16% Similarity=0.220 Sum_probs=241.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEc----
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKF---- 90 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl---- 90 (945)
||...|+.++-......+.+++ .|.+-+||.++++ .+...+.+|.+.|.+|.|++.+.++++++.|++..||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtAS-ADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTAS-ADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ccccceeeehhhcCCcceeecc-cccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 5558899999887777666665 9999999999988 567788999999999999999999999999999999972
Q ss_pred --CCC----------------------------------eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 91 --PGG----------------------------------EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 91 --~~g----------------------------------~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
+.. .++..+.+|...|.+..|...|..+++++.|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 110 12345677888999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 135 GSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 135 ~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
+..+..+.+|....+.++-+|..+++++++.|.+.++||++.. +.... .+.+|...++++.|..+. .+++|+.
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~----VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVA----VFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceee----eecccccceeEEEEecCC-ceeecCC
Confidence 9999999999999999999999999999999999999999843 22221 223667889999998654 5889999
Q ss_pred CCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-----ccCCCCeeEEEEec
Q 002266 215 KNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-----QKFDDRICCMAWKP 288 (945)
Q Consensus 215 dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-----~~~~~~V~~la~sp 288 (945)
|.+|++||+++.. ++.++. ...+++.++.+..+..||.--.+..|++||+....+... .+|..-|+|++|..
T Consensus 377 DrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred CceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccc
Confidence 9999999999876 455665 568999999999999999999899999999987665433 46778899999987
Q ss_pred CCC--EEEEEEcCCeEEEEecCCCC
Q 002266 289 IGN--ALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 289 dg~--~Las~s~DG~I~iWd~~~~~ 311 (945)
+.. -|++++.|..+.-|.+.+|.
T Consensus 455 ehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cCcccccccccccceeeeeEecccC
Confidence 643 58899999999999998775
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=216.39 Aligned_cols=246 Identities=19% Similarity=0.286 Sum_probs=213.7
Q ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec--------ccCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 002266 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI--------TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 60 h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l--------~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd 131 (945)
...-+.|..|+|||++|++|+.||.|.+|+..+|+....+ .-+..+|.|+.|+.|...+|+|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4566889999999999999999999999999998765433 34577999999999999999999999999999
Q ss_pred cCCCeEEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEE
Q 002266 132 TIDGSIARVLK-GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLA 210 (945)
Q Consensus 132 ~~~~~~~~~l~-~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La 210 (945)
+++|.+++.+. .|...|+|+.|+.|+..+++++.|.+++|.-+.+|+.+..+. +|.+.|+...|.++|.+++
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-------GHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-------GHSSYVNEATFTDDGHHII 364 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-------CccccccceEEcCCCCeEE
Confidence 99999999886 899999999999999999999999999999999999887776 4567889999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEeecC-CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeeee---ccCCCCeeEEE
Q 002266 211 VPGLKNDVVMYDRDTAEKLFSLRG-DHVQPICFLSWSP-NGKYMATSSLDRQILIWDVGKKLDIDR---QKFDDRICCMA 285 (945)
Q Consensus 211 ~gs~dg~I~vwD~~t~~~~~~~~~-~h~~~I~~l~fSp-dg~~Lasgs~Dg~I~IWD~~~~~~i~~---~~~~~~V~~la 285 (945)
+++.||+|++|+.++.+++.++.. +...+|..+..-| +...++.|...++|+|.++....+... ..-.+...+.+
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEE
Confidence 999999999999999999888864 3456888888777 567899999999999999876443332 12234567778
Q ss_pred EecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 286 WKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 286 ~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
.+|.|.++++.+.|+.++.|....+..
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCce
Confidence 999999999999999999999887764
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=7.7e-23 Score=228.25 Aligned_cols=289 Identities=13% Similarity=0.219 Sum_probs=232.2
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccc--ccccccccceEEEEEec-C----------CCEEEEEEcCCcEE
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLP--KILRHHRDGVTALALSP-N----------STCLASGSIDHSVK 86 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~--~~l~~h~~~V~~la~sp-d----------g~~Lasgs~Dg~V~ 86 (945)
-.++.|++....|.+.- .|..++|||+....... ..+..|...|+.+.--| + ...|+||+.|++|+
T Consensus 327 ~IA~~Fdet~~klscVY-ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVY-NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCceEEEEE-cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 45778999999988875 89999999987665433 33456888888876655 1 13689999999999
Q ss_pred EEEcCCCeeeee----------------------c---------------ccCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 002266 87 LYKFPGGEFQTN----------------------I---------------TRFTLPIRVLAFNKSGSMLAAAGDDEGIKL 129 (945)
Q Consensus 87 iwdl~~g~~~~~----------------------l---------------~~~~~~V~~l~fspdg~~Lasgs~Dg~I~i 129 (945)
+|++..+..-.. + ......+++++.+|+|.+||+|..-|+++|
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 999865211000 0 011235899999999999999999999999
Q ss_pred EEcCCCeEEEEEecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEccCC-eeeeeecccCCC----------------
Q 002266 130 INTIDGSIARVLKGHKGPVTGLAFDP---NSEYLASIDSIGTVIYWELQSG-RELHNLKRVAPD---------------- 189 (945)
Q Consensus 130 wd~~~~~~~~~l~~h~~~V~~lafsp---dg~~Las~s~Dg~I~iwDl~t~-~~i~~~~~~~~~---------------- 189 (945)
|++..-+....+..|...|.|+.|+- ..++||+++.|..|.|||+... ..+.++..+...
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 99999888889999999999999986 3568999999999999998542 111111110000
Q ss_pred --------------------------CCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC--CCCCeE
Q 002266 190 --------------------------IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD--HVQPIC 241 (945)
Q Consensus 190 --------------------------~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~--h~~~I~ 241 (945)
.......++.++..|..+++++++.|..|+||++.+++....|++. |.+...
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 0011244677889999999999999999999999999999999874 557788
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
.+...|.|.|||+...|.+|.++|+.+++++.. .+|...|+++.|.+|-+.|++.+.||.|.||.+..
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 899999999999999999999999999999987 78999999999999999999999999999999764
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-23 Score=232.40 Aligned_cols=291 Identities=20% Similarity=0.238 Sum_probs=244.9
Q ss_pred ccccccCCCCCEE---EEEEC-CCCCEEEEEEcCCCeEEEEcCCCCcc-----ccccccccccceEEEEEecCCCEEEEE
Q 002266 9 REAHKCGNAASFC---SILWD-QQAHHLVTASSSETTISIHDPLLPSN-----LPKILRHHRDGVTALALSPNSTCLASG 79 (945)
Q Consensus 9 ~~aH~~gh~~~V~---svafs-pdg~~L~t~g~~dg~V~IWd~~~~~~-----~~~~l~~h~~~V~~la~spdg~~Lasg 79 (945)
+..+...|...|. ++..+ |.+++|+++| .||.|++|+...... ....+..|.+.|..++...+|+.|+++
T Consensus 13 ~D~~e~qn~~~v~~~~~Lq~da~~~ryLfTgG-RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 13 RDENEKQNRNGVNITKALQLDAPNGRYLFTGG-RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred cchhhhhccccccchhhccccCCCCceEEecC-CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe
Confidence 4444434555566 55555 4566788887 999999999765543 355678899999999999999999999
Q ss_pred EcCCcEEEEEcCCC--eeeeecccCCCCEEEEEE-ecCCCEEEEEECCCcEEEEEcCCCe--EE--------EEEe-cCC
Q 002266 80 SIDHSVKLYKFPGG--EFQTNITRFTLPIRVLAF-NKSGSMLAAAGDDEGIKLINTIDGS--IA--------RVLK-GHK 145 (945)
Q Consensus 80 s~Dg~V~iwdl~~g--~~~~~l~~~~~~V~~l~f-spdg~~Lasgs~Dg~I~iwd~~~~~--~~--------~~l~-~h~ 145 (945)
+.|.+|++|+...+ -+..++..|...|.|+++ -++...+|+||-|+.|.+||+.++. .+ ..+. ++.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 99999999998776 567788999999999999 7788999999999999999999772 22 2223 788
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 002266 146 GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT 225 (945)
Q Consensus 146 ~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t 225 (945)
..|++++.++.|..+++|+..+.+++||.++.+.+..+. +|...|..+..++||..+++++.||+|++||+..
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeee-------ccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 999999999999999999999999999999998877765 4567889999999999999999999999999999
Q ss_pred CcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 002266 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK-LDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGV 304 (945)
Q Consensus 226 ~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~-~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~i 304 (945)
.+++.++.. |...|.++..+|+-.++++|+.||.|..=|+.+. +.....+-..+|..+..+...+.+-+++.|+.|.-
T Consensus 245 QrCl~T~~v-H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 245 QRCLATYIV-HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred cceeeeEEe-ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecccccee
Confidence 999999876 8888999999999999999999999999999884 33344455667888888876666678889999999
Q ss_pred EecC
Q 002266 305 WESV 308 (945)
Q Consensus 305 Wd~~ 308 (945)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9764
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=5.8e-23 Score=241.77 Aligned_cols=252 Identities=20% Similarity=0.287 Sum_probs=211.2
Q ss_pred cccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC------C----c-------cccccccccccceEEEEEecC
Q 002266 10 EAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLL------P----S-------NLPKILRHHRDGVTALALSPN 72 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~------~----~-------~~~~~l~~h~~~V~~la~spd 72 (945)
-.+. .|.+.|+|+.|+|||++||+|+ .|+.|.||.... . + ....++.+|...|..++|+|+
T Consensus 63 ~~m~-~h~~sv~CVR~S~dG~~lAsGS-DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 63 CTMD-DHDGSVNCVRFSPDGSYLASGS-DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred eeec-cccCceeEEEECCCCCeEeecc-CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3445 7889999999999999999987 999999998652 0 0 133467889999999999999
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC------CC
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH------KG 146 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h------~~ 146 (945)
+.+|++++.|++|.||+..+.+....+.+|.+.|..+.|.|-|++||+-++|++|+||++.+....+.+..+ ..
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999998887777776654 34
Q ss_pred CEEEEEEccCCCEEEEEeC----CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-----CC----------
Q 002266 147 PVTGLAFDPNSEYLASIDS----IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD-----GE---------- 207 (945)
Q Consensus 147 ~V~~lafspdg~~Las~s~----Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd-----g~---------- 207 (945)
.+..+.|+|||.+|++... -.++.|.+-.+.+.-..+. +|..++.++.|+|. .+
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 5788999999999998632 2357777655444434433 56678999999872 12
Q ss_pred --EEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 002266 208 --TLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 208 --~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
.+|+|+.|+.|.||.....+++.....-....|.+++|+|||..|.++|.||+|.++.++..+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 578899999999999998888877765566899999999999999999999999999987643
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=3.6e-23 Score=219.93 Aligned_cols=241 Identities=20% Similarity=0.251 Sum_probs=209.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
|..+.|+++.|.++++++++++ .|+.+++|++... ....++.+|++.|+++.|......+++|+.|.+|++||+....
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas-~d~~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAAS-NDKNLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred ccCCCcceeeecCCCceEEeec-CCCceeeeeccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 4557899999999999999987 9999999998776 6788999999999999999877779999999999999999887
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
+...+. ....+.+|+.+ ...+++|-.|++|++||++...+......+ +.|+++..++++..|++++.|.++.+.|+
T Consensus 295 C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 295 CSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred eecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeec
Confidence 776654 34456666665 567888999999999999999999888876 49999999999999999999999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC-CeEEEEEcCCCCEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ-PICFLSWSPNGKYMA 253 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~-~I~~l~fSpdg~~La 253 (945)
++....+.+...... ..+..+.++|||++.|+++|+.||.|+||++.+++....+...+.. .|++++|+|.|.+|+
T Consensus 371 Rt~eI~~~~sA~g~k---~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFK---CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred ccccEEEEeeccccc---cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 998888777643222 2244788999999999999999999999999999998888765544 799999999999999
Q ss_pred EEECCCeEEEE
Q 002266 254 TSSLDRQILIW 264 (945)
Q Consensus 254 sgs~Dg~I~IW 264 (945)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=8.6e-23 Score=221.66 Aligned_cols=255 Identities=20% Similarity=0.357 Sum_probs=199.6
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee----ee-cccCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ----TN-ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKL 129 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~----~~-l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~i 129 (945)
..+.+|+..|.++++.|.|..|++|+.|-+|++||+...... +. .......|+++.|++.|..|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 346778899999999999999999999999999999754321 11 2234568999999999999999999999999
Q ss_pred EEcCCCeEEEE------------EecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCe-eeeeecccCCCCCCCCC
Q 002266 130 INTIDGSIARV------------LKGHKGPVTGLAFDPNS-EYLASIDSIGTVIYWELQSGR-ELHNLKRVAPDIGSDPS 195 (945)
Q Consensus 130 wd~~~~~~~~~------------l~~h~~~V~~lafspdg-~~Las~s~Dg~I~iwDl~t~~-~i~~~~~~~~~~~~~~~ 195 (945)
+|-........ .++|...++|.+|+|.. +.+++++.||+++|||+...+ ....++.. ..+....
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--~~~g~Rv 318 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--PAGGKRV 318 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec--cCCCccc
Confidence 99754433332 25788999999999965 478999999999999997754 33333321 1223446
Q ss_pred CceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEeecCCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCee
Q 002266 196 SMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE--KLFSLRGDHVQ--PICFLSWSPNGKYMATSSLDRQILIWDVGKKLD 271 (945)
Q Consensus 196 ~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~--~~~~~~~~h~~--~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~ 271 (945)
+++.++|+|+|+.||+|+.||.|.+|+...+. +...+...|.. .|++|.||++|++|++-+.|+++++||++..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 78899999999999999999999999986553 44555556766 899999999999999999999999999987543
Q ss_pred -eee-cc--CCCCeeEEEEecCCCEEEEEE------cCCeEEEEecCCCC
Q 002266 272 -IDR-QK--FDDRICCMAWKPIGNALAVID------VMGKYGVWESVVPS 311 (945)
Q Consensus 272 -i~~-~~--~~~~V~~la~spdg~~Las~s------~DG~I~iWd~~~~~ 311 (945)
+.. .+ ..-.-+.++|+|+.++|++|+ ..|.+.+||-.+-.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 333 22 234568899999999999975 35779999865444
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.9e-22 Score=224.84 Aligned_cols=273 Identities=15% Similarity=0.234 Sum_probs=230.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccc-ccccccccceEE-EEEec-CCCEEEEEEcCCcEEEEEcC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLP-KILRHHRDGVTA-LALSP-NSTCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~-~~l~~h~~~V~~-la~sp-dg~~Lasgs~Dg~V~iwdl~ 91 (945)
||...|+.++..+.. .++.++ .||++++|+-....-.. ..+.+|.+-|.+ +++.+ ++-.|++|+.|+.|.+|...
T Consensus 12 gH~~DVr~v~~~~~~-~i~s~s-Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGV-CIISGS-RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred cCccchheeEecCCe-EEeecC-CCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 677899999887555 556554 89999999864443222 456677777776 88875 55579999999999999999
Q ss_pred CCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 92 GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 92 ~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
...+...+.+|...|.++....++. +++|+.|.++++|-. +++...+.+|+..|+.++.-|++ .+++|+.|.+|++
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeee
Confidence 9999999999999999999888877 999999999999975 55566799999999999999988 7899999999999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCE
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~ 251 (945)
|.- ++.++++. +|...|+.+++-+++. |++++.||.|++|++ +++.+.+..+ |..-|.++....++..
T Consensus 166 Wk~--~~~l~tf~-------gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 166 WKG--GTLLKTFS-------GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGL 233 (745)
T ss_pred ccC--Cchhhhhc-------cchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCe
Confidence 974 55566554 5678889999987654 667788999999999 6888888887 9999999998888899
Q ss_pred EEEEECCCeEEEEECCCCeeeeeccCCC-CeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 252 MATSSLDRQILIWDVGKKLDIDRQKFDD-RICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~~~~~~i~~~~~~~-~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
+++++.|++++||+.. .+.+.+.++. .|+++.+-++| -|++|+.||.|+||...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEec
Confidence 9999999999999987 7777777765 79999888877 47899999999999764
No 103
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=8.6e-23 Score=220.41 Aligned_cols=254 Identities=22% Similarity=0.363 Sum_probs=205.8
Q ss_pred cccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccc---------ccccccccceEEEEEecC-CCEEE
Q 002266 8 LREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLP---------KILRHHRDGVTALALSPN-STCLA 77 (945)
Q Consensus 8 ~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~---------~~l~~h~~~V~~la~spd-g~~La 77 (945)
+...++..|.+.|+.+.+-|+...|+++.+..+.|.|||........ ..+.+|...-++|+|++. .-.|+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 33444456889999999999999999887789999999975433222 267889888899999994 45889
Q ss_pred EEEcCCcEEEEEcCCCe-------eeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcC--CCeEEEEEecCCCC
Q 002266 78 SGSIDHSVKLYKFPGGE-------FQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTI--DGSIARVLKGHKGP 147 (945)
Q Consensus 78 sgs~Dg~V~iwdl~~g~-------~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~--~~~~~~~l~~h~~~ 147 (945)
+++.|+.|++||+.... ....+.+|...|..++|++ +..+|+++++|+.+.|||++ +.+......+|.+.
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 99999999999986543 2356778999999999998 56788999999999999999 55667778899999
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEccCCee-eeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 002266 148 VTGLAFDP-NSEYLASIDSIGTVIYWELQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRD 224 (945)
Q Consensus 148 V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~-i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~ 224 (945)
|.|++|+| ++..||+|+.|++|.+||+|+... ++.+ ..|...|.++.|+| ....|++++.|+.+.|||+.
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-------e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF-------EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec-------cCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 99999999 556789999999999999988643 3333 36778899999999 56788899999999999987
Q ss_pred CCcE-------------EEeecCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC
Q 002266 225 TAEK-------------LFSLRGDHVQPICFLSWSPNGK-YMATSSLDRQILIWDVGK 268 (945)
Q Consensus 225 t~~~-------------~~~~~~~h~~~I~~l~fSpdg~-~Lasgs~Dg~I~IWD~~~ 268 (945)
.... +....++|...|..+.|+|+.. .|++.+.|+.+.||....
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 4321 1233445999999999999766 567888999999998764
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=3e-22 Score=233.83 Aligned_cols=243 Identities=23% Similarity=0.348 Sum_probs=212.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.+.|.+++|..-+..|++++ .|.+++|||..++ .+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++.
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS-~D~t~rvWd~~sg-~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGS-TDKTERVWDCSTG-ECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEe-cCCcEEeEecCCC-cEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence 7779999999988677777775 9999999998776 67888999999999997654 578889999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
.+..+.+|..+|+++..+ +.++++|+.|+.|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|++|++||+
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 999999999999999997 789999999999999999999999999999999999988765 89999999999999999
Q ss_pred cCC-eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 175 QSG-RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 175 ~t~-~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
++. +++..+..+ ...+..+ ...+++|++++.|+.|++||..+++++..+.+.|...|..+++. ...++
T Consensus 400 ~~~~~c~~tl~~h-------~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il 468 (537)
T KOG0274|consen 400 RTKRKCIHTLQGH-------TSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEIL 468 (537)
T ss_pred CchhhhhhhhcCC-------ccccccc--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEE
Confidence 999 777766543 3333333 34688999999999999999999999999987566888888876 46788
Q ss_pred EEECCCeEEEEECCCCeeeeec
Q 002266 254 TSSLDRQILIWDVGKKLDIDRQ 275 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~i~~~ 275 (945)
+++.||.+.+||+.++..+...
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 8889999999999999887764
No 105
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=3.3e-22 Score=210.79 Aligned_cols=244 Identities=19% Similarity=0.353 Sum_probs=201.8
Q ss_pred CCCCCEEEEEECCCCC---EEEEEEcCCCeEEEEcCCCCccc---cccccccccceEEEEEecCCCEEEEEEcCCcEEEE
Q 002266 15 GNAASFCSILWDQQAH---HLVTASSSETTISIHDPLLPSNL---PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88 (945)
Q Consensus 15 gh~~~V~svafspdg~---~L~t~g~~dg~V~IWd~~~~~~~---~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iw 88 (945)
||.++|.+++|--... .+++++ .|.++++|....+... .....+|...|-+++..++|..+++|+.|..|.||
T Consensus 142 Ght~~ik~v~~v~~n~~~~~fvsas-~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiW 220 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNSSSCLFVSAS-MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIW 220 (423)
T ss_pred cCCcceeeeEEEecCCccceEEEec-CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeec
Confidence 5559999888854333 477775 9999999987765432 23445999999999999999999999999999999
Q ss_pred EcCC-------------------------CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec
Q 002266 89 KFPG-------------------------GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG 143 (945)
Q Consensus 89 dl~~-------------------------g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~ 143 (945)
+..+ +..+..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.+
T Consensus 221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT 299 (423)
T ss_pred ccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec
Confidence 9321 123456788999999999997 67899999999999999999998888774
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEE
Q 002266 144 HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 144 h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD 222 (945)
...+.++.++|...+|++|+.|..+++||.+++.-.... ..+.+|...|..+.|+| +...|++++.|+++++||
T Consensus 300 -~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 300 -NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred -CcceeEeecccccceeeecCCCCceeecCCCCCCCceeE----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 577899999999999999999999999999987321111 12336778899999999 566788899999999999
Q ss_pred CCCCc-EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002266 223 RDTAE-KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 223 ~~t~~-~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~ 267 (945)
+++.+ +++.+.+ |...|.++.|. ++.+|++|+.|.+|+|+...
T Consensus 375 vRS~k~plydI~~-h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 375 VRSTKAPLYDIAG-HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eccCCCcceeecc-CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99877 8888887 99999999997 56689999999999998653
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=7.1e-21 Score=209.15 Aligned_cols=270 Identities=15% Similarity=0.188 Sum_probs=203.9
Q ss_pred CEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEE-EEEEcCCcEEEEEcCCCeeeeecccCCCCEEE
Q 002266 30 HHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCL-ASGSIDHSVKLYKFPGGEFQTNITRFTLPIRV 108 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~L-asgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~ 108 (945)
..+++++ .|+.|++||..++. ....+..+ ..+.+++|+|++..+ ++++.++.|++||..+++....+..+. .+..
T Consensus 2 ~~~~s~~-~d~~v~~~d~~t~~-~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 77 (300)
T TIGR03866 2 KAYVSNE-KDNTISVIDTATLE-VTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPEL 77 (300)
T ss_pred cEEEEec-CCCEEEEEECCCCc-eEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccE
Confidence 3455554 89999999987763 34455544 346789999999876 566778999999999888776665433 3567
Q ss_pred EEEecCCCEEEEE-ECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEccCCeeeeeeccc
Q 002266 109 LAFNKSGSMLAAA-GDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG-TVIYWELQSGRELHNLKRV 186 (945)
Q Consensus 109 l~fspdg~~Lasg-s~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg-~I~iwDl~t~~~i~~~~~~ 186 (945)
++|+|+++.++++ +.++.|++||+.+...+..+.. ...+.+++|+|++.++++++.++ .+.+||..++.....+..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~- 155 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV- 155 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-
Confidence 8999999977665 4688999999998877766653 34568899999999999888765 467789888766544321
Q ss_pred CCCCCCCCCCceEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEeecCC----CC--CCeEEEEEcCCCCEEEEE-ECC
Q 002266 187 APDIGSDPSSMNVLSWSPDGETLAVPG-LKNDVVMYDRDTAEKLFSLRGD----HV--QPICFLSWSPNGKYMATS-SLD 258 (945)
Q Consensus 187 ~~~~~~~~~~i~~l~~spdg~~La~gs-~dg~I~vwD~~t~~~~~~~~~~----h~--~~I~~l~fSpdg~~Lasg-s~D 258 (945)
......++|+|+|++|++++ .++.|++||+.+++.+..+... +. .....++|+|+|++++++ +.+
T Consensus 156 -------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 156 -------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred -------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 12345689999999886654 5899999999998776554320 11 123568899999986554 456
Q ss_pred CeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEE-EcCCeEEEEecCCCCC
Q 002266 259 RQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVI-DVMGKYGVWESVVPSS 312 (945)
Q Consensus 259 g~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~-s~DG~I~iWd~~~~~~ 312 (945)
+.|.+||+.+++.+....+...+.+++|+|+|++|+++ ..+|.|.+||......
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 78999999998887665566789999999999998886 4689999999987654
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.3e-22 Score=203.98 Aligned_cols=247 Identities=23% Similarity=0.352 Sum_probs=193.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccc----------------------------------------
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLP---------------------------------------- 54 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~---------------------------------------- 54 (945)
||...|++++|+.||++|++++ .|+.|+||++..-....
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~-~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATIS-GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEe-CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 7789999999999999999997 99999999853210000
Q ss_pred ------------------ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC
Q 002266 55 ------------------KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116 (945)
Q Consensus 55 ------------------~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~ 116 (945)
..-..|.-.|..+-....+.+|++++.|..|.+|++. |+.+..+......-+..+.+|+|+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCc
Confidence 0001133345555555667899999999999999997 888888887777888899999999
Q ss_pred EEEEEECCCcEEEEEcC---CCe-----EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC----eeeeeec
Q 002266 117 MLAAAGDDEGIKLINTI---DGS-----IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG----RELHNLK 184 (945)
Q Consensus 117 ~Lasgs~Dg~I~iwd~~---~~~-----~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~----~~i~~~~ 184 (945)
++++++..--|++|.+- +|+ .+..+++|...|..++|+++...+++.+.||+++|||+.-. +-...++
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999999874 232 35568899999999999999999999999999999997532 1111222
Q ss_pred ccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002266 185 RVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIW 264 (945)
Q Consensus 185 ~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IW 264 (945)
..........+....+.++|+|+.|++.. ...+.+|..++++..-.+...|...|++++|+++|+++++++ |..++++
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 11111111223345899999999999865 678999999999988888777999999999999999999998 7788887
Q ss_pred E
Q 002266 265 D 265 (945)
Q Consensus 265 D 265 (945)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.8e-22 Score=200.22 Aligned_cols=250 Identities=24% Similarity=0.359 Sum_probs=203.8
Q ss_pred cccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC---eeeeecccCCCCEEEEEEec--CCCEEEEEECCCcEEEE
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG---EFQTNITRFTLPIRVLAFNK--SGSMLAAAGDDEGIKLI 130 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g---~~~~~l~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~iw 130 (945)
+...|.+.|..+...--|++|+||+.|++|+|+..++. ..+..+.+|.+||..++|.. -|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 44578888998888888999999999999999998754 46778999999999999986 89999999999999999
Q ss_pred EcCCCe--EEEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-
Q 002266 131 NTIDGS--IARVLKGHKGPVTGLAFDPN--SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD- 205 (945)
Q Consensus 131 d~~~~~--~~~~l~~h~~~V~~lafspd--g~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd- 205 (945)
.-.++. .......|...|++++|.|. |-.|++++.||.|.|.+.+....-.. ......|.-.+++++|.|.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t----~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT----SKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc----hhhhhccccccceeeecCcC
Confidence 988774 34456789999999999995 55889999999999999876511111 1122356778899999985
Q ss_pred --C-----------CEEEEEeCCCeEEEEECCCCc--EEEeecCCCCCCeEEEEEcCCC----CEEEEEECCCeEEEEEC
Q 002266 206 --G-----------ETLAVPGLKNDVVMYDRDTAE--KLFSLRGDHVQPICFLSWSPNG----KYMATSSLDRQILIWDV 266 (945)
Q Consensus 206 --g-----------~~La~gs~dg~I~vwD~~t~~--~~~~~~~~h~~~I~~l~fSpdg----~~Lasgs~Dg~I~IWD~ 266 (945)
| +.|++|+.|+.|+||+...+. .-.++.+ |..-|..++|.|.- .+||+++.||++.||..
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-cchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 5 569999999999999988753 3344665 99999999999953 58999999999999987
Q ss_pred CCC----eeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 267 GKK----LDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 267 ~~~----~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
+.. +......+...+..+.|+..|+.|++++.|+.|.+|.....
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 632 11222346788999999999999999999999999976543
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.7e-21 Score=214.99 Aligned_cols=285 Identities=17% Similarity=0.190 Sum_probs=235.4
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccccc-ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHH-RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h-~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~ 96 (945)
..|.|+||+.+.+.||++- .+|.|-||++...-.....+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+++..
T Consensus 26 s~I~slA~s~kS~~lAvsR-t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSR-TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred cceEEEEEeccCCceeeec-cCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 7799999999999999886 89999999998765555566655 46799999995 457788889999999999999999
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE--EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR--VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~--~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
..+....+.|++++.+|.+..+++|++||.+..++...+.... .+...++.|.+++|+|++..|++|+.||.|++||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 9999899999999999999999999999988888887776543 34445689999999999999999999999999999
Q ss_pred cCCeeeeeecccCCCCCC-CCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 175 QSGRELHNLKRVAPDIGS-DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~-~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
.++..++........... ....+.++.|-. ...|++|...|.|.+||...+..+..+.. |...|.+++..+++.+++
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~-h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSC-HDADVLALAVADNEDRVF 261 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhh-hhcceeEEEEcCCCCeEE
Confidence 999877743322222222 333455555553 45689999999999999999999988887 999999999999999999
Q ss_pred EEECCCeEEEEECCCCee-----eeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 254 TSSLDRQILIWDVGKKLD-----IDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~-----i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
+++.|+.|.-|...+... ..+..|...|.+++..++ .|++|+.|+.+.+-...
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 999999999998877633 233557788999999877 89999999988876544
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.9e-20 Score=205.75 Aligned_cols=265 Identities=18% Similarity=0.177 Sum_probs=199.5
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEE-EcCCcEEEEEcCCCeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASG-SIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasg-s~Dg~V~iwdl~~g~~~ 96 (945)
..+.+++|+|+|+.+++++..++.|++||..++.. ...+..+. .+..++|+|+++.++++ +.++.|++||+.+++.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 34678999999998876655889999999877633 33333333 35688999999877655 56899999999988766
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEc
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDE-GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASI-DSIGTVIYWEL 174 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~Dg-~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~-s~Dg~I~iwDl 174 (945)
..+. ....+.+++|+|+|.++++++.++ .+.+||..++.....+.. ...+.+++|+|++.+|+++ ..++.|++||+
T Consensus 109 ~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 109 AEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred eEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 6554 234568899999999999988775 467789988876655442 3456789999999988655 46899999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP-GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g-s~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
.+++.+..+................++|+|+|++++++ +.++.|.+||+.+++.+..+. +...+.+++|+|+|.+|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEE
Confidence 99877665542211111111223468899999986554 456789999999888776553 345788999999999998
Q ss_pred EE-ECCCeEEEEECCCCeeeeeccCCCCeeEEEEec
Q 002266 254 TS-SLDRQILIWDVGKKLDIDRQKFDDRICCMAWKP 288 (945)
Q Consensus 254 sg-s~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~sp 288 (945)
++ +.+|.|.|||+.+++.+..+......++++++|
T Consensus 265 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 265 TTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 86 458999999999999988887777889988875
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=225.67 Aligned_cols=245 Identities=20% Similarity=0.310 Sum_probs=212.4
Q ss_pred EEEEec-CCCEEEEEEcCCcEEEEEcCCCe------eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC--e
Q 002266 66 ALALSP-NSTCLASGSIDHSVKLYKFPGGE------FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG--S 136 (945)
Q Consensus 66 ~la~sp-dg~~Lasgs~Dg~V~iwdl~~g~------~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~--~ 136 (945)
++..+. .+++|++|+.||.|++|++.... ....+..|...|.+++...+++.|++++.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 444443 66789999999999999985422 35667889999999999999999999999999999999876 5
Q ss_pred EEEEEecCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEEccCC--eeeeeecccC--CCCCCCCCCceEEEEcCCCCEEEE
Q 002266 137 IARVLKGHKGPVTGLAF-DPNSEYLASIDSIGTVIYWELQSG--RELHNLKRVA--PDIGSDPSSMNVLSWSPDGETLAV 211 (945)
Q Consensus 137 ~~~~l~~h~~~V~~laf-spdg~~Las~s~Dg~I~iwDl~t~--~~i~~~~~~~--~~~~~~~~~i~~l~~spdg~~La~ 211 (945)
+..++..|.+.|.|+++ -++...+|+|+-|+.|.+||+.++ +.+..+.... ....++...+++++..+.|..|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 67788999999999999 778889999999999999999988 3344333221 112256678999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCC
Q 002266 212 PGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIG 290 (945)
Q Consensus 212 gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg 290 (945)
|+..+.|++||.++.+.+..+.+ |...|..+..++||..+++++.||+|++||+...+++.. ..|...|+++..+|+=
T Consensus 189 Ggtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 99999999999999999999997 999999999999999999999999999999999999887 5688889999999998
Q ss_pred CEEEEEEcCCeEEEEecCCCC
Q 002266 291 NALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 291 ~~Las~s~DG~I~iWd~~~~~ 311 (945)
..+++|+.||.|..=|+..+.
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ceEEecCCCCcEEecccCCch
Confidence 999999999999998887653
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=211.91 Aligned_cols=256 Identities=18% Similarity=0.253 Sum_probs=214.9
Q ss_pred CEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEE
Q 002266 30 HHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVL 109 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l 109 (945)
.+++++......+.+|.+....... ...--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-..|+|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 3566665566688899876554333 222336789999999999999998899999999999999999999999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEEcC---------CCeEEEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEccCCe
Q 002266 110 AFNKSGSMLAAAGDDEGIKLINTI---------DGSIARVLKGHKGPVTGLAFDPN--SEYLASIDSIGTVIYWELQSGR 178 (945)
Q Consensus 110 ~fspdg~~Lasgs~Dg~I~iwd~~---------~~~~~~~l~~h~~~V~~lafspd--g~~Las~s~Dg~I~iwDl~t~~ 178 (945)
.|+-||.+|++|+.||.|.+|.+. +..+.+.+..|.-+|+++...+. ..+|++++.|.++++||+..+.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 999999999999999999999874 23567888999999999998775 3589999999999999999998
Q ss_pred eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------EEEeecCCCCC--Ce
Q 002266 179 ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE----------------KLFSLRGDHVQ--PI 240 (945)
Q Consensus 179 ~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~----------------~~~~~~~~h~~--~I 240 (945)
.+.++.. +..+.+++.+|-+..+++|+.+|.|.+.++.... .+..+.+ |.. .|
T Consensus 210 LLlti~f--------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~~~I 280 (476)
T KOG0646|consen 210 LLLTITF--------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENESAI 280 (476)
T ss_pred eeEEEec--------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc-ccCCcce
Confidence 8877653 4678899999999999999999999998876543 2334444 666 99
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc-CCCCeeEEEEecCCCEEEE
Q 002266 241 CFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK-FDDRICCMAWKPIGNALAV 295 (945)
Q Consensus 241 ~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~-~~~~V~~la~spdg~~Las 295 (945)
+|++.+-||.+|++|+.||.|+|||+.+.+++.+.. ..++|+.+.+.|-.+....
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceec
Confidence 999999999999999999999999999999999876 6789999999876443333
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=7.5e-21 Score=194.21 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=224.4
Q ss_pred CCCCCEEEEEECCC-CCEEEEEEcCCCeEEEEcCCCCcccc--------------ccccccccceEEEEEec-CCCEEEE
Q 002266 15 GNAASFCSILWDQQ-AHHLVTASSSETTISIHDPLLPSNLP--------------KILRHHRDGVTALALSP-NSTCLAS 78 (945)
Q Consensus 15 gh~~~V~svafspd-g~~L~t~g~~dg~V~IWd~~~~~~~~--------------~~l~~h~~~V~~la~sp-dg~~Las 78 (945)
.|.+.|+++...+. |++++++| .||.|.|||++...... ..-.+|.-.|..+.|.| |.-.+.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGg-adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGG-ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecC-CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 56689999999885 66777765 99999999987543110 11235778899999999 6678889
Q ss_pred EEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEec---CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc
Q 002266 79 GSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK---SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155 (945)
Q Consensus 79 gs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fsp---dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp 155 (945)
++.|.++++||..+.+....+. ..+.|.+-+++| ...++|+|..+-.|++.|+..|...+++.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999888766655 577888889988 345788888999999999999999999999999999999999
Q ss_pred CCCE-EEEEeCCCcEEEEEccCC-eeeeeecccC-------CCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 002266 156 NSEY-LASIDSIGTVIYWELQSG-RELHNLKRVA-------PDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA 226 (945)
Q Consensus 156 dg~~-Las~s~Dg~I~iwDl~t~-~~i~~~~~~~-------~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~ 226 (945)
..++ |++|+.||.|++||++.. .+...+..+. .....|.+.++.++|..+|.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 8875 688999999999999875 3444443222 113357788999999999999999999999999999887
Q ss_pred cEEEeecC--CCCC---CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCC
Q 002266 227 EKLFSLRG--DHVQ---PICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMG 300 (945)
Q Consensus 227 ~~~~~~~~--~h~~---~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG 300 (945)
+....-.+ .|.. .-..+. +-+...++---.++.+.++++-.+..+.. ..|...|.+.++.|+=+.+.+++.|+
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred cccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC
Confidence 64322111 1111 111122 23333444444568899999988888877 34667899999999988999999999
Q ss_pred eEEEEec
Q 002266 301 KYGVWES 307 (945)
Q Consensus 301 ~I~iWd~ 307 (945)
.|..|-.
T Consensus 358 ni~~w~p 364 (397)
T KOG4283|consen 358 NIYMWSP 364 (397)
T ss_pred ccccccc
Confidence 9999976
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.1e-21 Score=211.78 Aligned_cols=244 Identities=18% Similarity=0.366 Sum_probs=195.5
Q ss_pred ccccceEEEEEecCC-CEEEEEEcCCcEEEEEcCCCe----------eeeecccCCCCEEEEEEecC-CCEEEEEECCCc
Q 002266 59 HHRDGVTALALSPNS-TCLASGSIDHSVKLYKFPGGE----------FQTNITRFTLPIRVLAFNKS-GSMLAAAGDDEG 126 (945)
Q Consensus 59 ~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl~~g~----------~~~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~ 126 (945)
.|.+.|+.+.+-|.. .++++.+..+.|.|||..... ....+.+|...-..++|++. .-.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 478889999999954 567777888999999975421 12267778877788999984 457899999999
Q ss_pred EEEEEcCCCe-------EEEEEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCce
Q 002266 127 IKLINTIDGS-------IARVLKGHKGPVTGLAFDPN-SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198 (945)
Q Consensus 127 I~iwd~~~~~-------~~~~l~~h~~~V~~lafspd-g~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~ 198 (945)
|.+||+.... ....+.+|...|..++|++. ..++++++.|+.+.|||+|++ ... .......|...++
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~----~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSK----PSHSVKAHSAEVN 276 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCC----CcccccccCCcee
Confidence 9999997532 34567899999999999995 457788999999999999963 111 1122336778999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC------
Q 002266 199 VLSWSP-DGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKK------ 269 (945)
Q Consensus 199 ~l~~sp-dg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~------ 269 (945)
|++|+| ++..||+|+.|++|.+||+++.. ++.++.+ |...|..|.|||+ ...||+++.|+.+.|||+..-
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 999999 77889999999999999999875 5677776 9999999999995 568899999999999998541
Q ss_pred --------eeeee-ccCCCCeeEEEEecCCC-EEEEEEcCCeEEEEecC
Q 002266 270 --------LDIDR-QKFDDRICCMAWKPIGN-ALAVIDVMGKYGVWESV 308 (945)
Q Consensus 270 --------~~i~~-~~~~~~V~~la~spdg~-~Las~s~DG~I~iWd~~ 308 (945)
+++.. -+|...|..+.|+|... .|++.+.|+.+.||+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 11222 56788999999999887 68889999999999875
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.6e-22 Score=223.28 Aligned_cols=278 Identities=17% Similarity=0.266 Sum_probs=216.9
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccc-cc--ccc---ccceEEEEEec-CCCEEEEEEcCCcEEEEEc
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPK-IL--RHH---RDGVTALALSP-NSTCLASGSIDHSVKLYKF 90 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~-~l--~~h---~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl 90 (945)
+...+|...++-..|+.+| ...+.||.+........ .+ ... .-.+..+.|.. +.++|||++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEec--ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 4466777889988899887 55777886543321111 11 111 12355678876 5689999999999999999
Q ss_pred CC---CeeeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCEEEEEeC
Q 002266 91 PG---GEFQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASIDS 165 (945)
Q Consensus 91 ~~---g~~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~Las~s~ 165 (945)
.. .+.+..+..|...+.++.|++ ...+|++|+.||.|++||++......++.+....|+.++|+| .+.+++++..
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 76 455567888999999999998 457899999999999999999988888888899999999999 6778999999
Q ss_pred CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEeecCCCCCCeEEE
Q 002266 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEK--LFSLRGDHVQPICFL 243 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~--~~~~~~~h~~~I~~l 243 (945)
.|.+++||++....-. ..+..|.+++.++.|+|++.+||+|+.|+.|+|||..+.+. +.++. ...+|.+|
T Consensus 198 sG~lqlWDlRqp~r~~------~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rV 269 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCE------KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRV 269 (839)
T ss_pred CceEEEeeccCchhHH------HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeee
Confidence 9999999998753211 22347889999999999999999999999999999986653 33433 56799999
Q ss_pred EEcCCCC-EEEEEEC--CCeEEEEECCCCeeeee--ccCCCCeeEEEEec-CCCEEEEEEcCCeEEEE
Q 002266 244 SWSPNGK-YMATSSL--DRQILIWDVGKKLDIDR--QKFDDRICCMAWKP-IGNALAVIDVMGKYGVW 305 (945)
Q Consensus 244 ~fSpdg~-~Lasgs~--Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~sp-dg~~Las~s~DG~I~iW 305 (945)
.|-|... .||+++. |-.|+|||++..-+... ..|...++.++|.. |...|.+++.||.|..-
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 9999655 5666653 78899999987654433 56788899999976 34478889999987643
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.7e-21 Score=194.66 Aligned_cols=247 Identities=21% Similarity=0.291 Sum_probs=200.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc--cccccccccccceEEEEEec--CCCEEEEEEcCCcEEEEEc
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS--NLPKILRHHRDGVTALALSP--NSTCLASGSIDHSVKLYKF 90 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~sp--dg~~Lasgs~Dg~V~iwdl 90 (945)
+|...|..+...-.|++|+|++ .|++|+|+.+.... .+...+.+|.++|..++|.. -|.+||+++.||.|.||.-
T Consensus 9 ~H~D~IHda~lDyygkrlATcs-SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCS-SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeec-CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5668898888888999999997 99999999987665 46678899999999999987 8999999999999999998
Q ss_pred CCCeee--eecccCCCCEEEEEEecC--CCEEEEEECCCcEEEEEcCCC---eEEEEEecCCCCEEEEEEccC---C---
Q 002266 91 PGGEFQ--TNITRFTLPIRVLAFNKS--GSMLAAAGDDEGIKLINTIDG---SIARVLKGHKGPVTGLAFDPN---S--- 157 (945)
Q Consensus 91 ~~g~~~--~~l~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~iwd~~~~---~~~~~l~~h~~~V~~lafspd---g--- 157 (945)
.+|+-. .....|...|.+++|.|. |-.|++++.||.|.|.+.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 877533 334568899999999984 678999999999999988754 233455689999999999995 4
Q ss_pred --------CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC----CEEEEEeCCCeEEEEECCC
Q 002266 158 --------EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG----ETLAVPGLKNDVVMYDRDT 225 (945)
Q Consensus 158 --------~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg----~~La~gs~dg~I~vwD~~t 225 (945)
+.|++|+.|..|+||+..++.-+ +. ..+..|...++.++|.|.- .+|++++.||++.||..+.
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~--~e---~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK--LE---RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchh--hh---hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 56999999999999999887321 11 1244677889999999953 5799999999999998762
Q ss_pred Cc--EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002266 226 AE--KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 226 ~~--~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~ 267 (945)
.. -..++.......+..+.||..|++|+.++.|+.|.+|.-.
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 21 1122222245689999999999999999999999999653
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.4e-22 Score=227.89 Aligned_cols=248 Identities=26% Similarity=0.378 Sum_probs=221.0
Q ss_pred CCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCE
Q 002266 38 SETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM 117 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~ 117 (945)
....++||+.. .+..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.|+++..+
T Consensus 12 ~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 12 RATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERL 84 (825)
T ss_pred eeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhh
Confidence 55667788743 24467888888888678899999999999999998776666678999999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCc
Q 002266 118 LAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSM 197 (945)
Q Consensus 118 Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i 197 (945)
|++|+.+|+|++||++..+.++++.+|...+.++.|+|-+.|.+.++.|+.+.+||++...+.+.+. +|...+
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-------s~~~vv 157 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-------SHTRVV 157 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-------CCccee
Confidence 9999999999999999999999999999999999999999999999999999999999777777765 355678
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc-
Q 002266 198 NVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK- 276 (945)
Q Consensus 198 ~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~- 276 (945)
.++.|+|+|++++.++.|..++|||...|+....|.. |.+.+..+.|+|..-++++|+.|++|++||+++.+.+...+
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeeccccccccccccc-ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 8999999999999999999999999999999999987 99999999999999999999999999999999988887744
Q ss_pred CCCCeeEEEEecCCCEEEEEEcCC
Q 002266 277 FDDRICCMAWKPIGNALAVIDVMG 300 (945)
Q Consensus 277 ~~~~V~~la~spdg~~Las~s~DG 300 (945)
....|.+++|+|++..+++|....
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 357899999999998888876544
No 118
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=3.2e-21 Score=197.93 Aligned_cols=247 Identities=19% Similarity=0.311 Sum_probs=205.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc--ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN--LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~--~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g 93 (945)
|...|+++.|+|....|++++ .|++|+++|...... ..+.+. ...+|++|.|+|.|.+|++|....++++||+.+.
T Consensus 171 H~devn~l~FHPre~ILiS~s-rD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGS-RDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred ccCcccceeecchhheEEecc-CCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 559999999999999998886 999999999865431 122232 3578999999999999999999999999999998
Q ss_pred eeeeec---ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe-cCC-CCEEEEEEccCCCEEEEEeCCCc
Q 002266 94 EFQTNI---TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK-GHK-GPVTGLAFDPNSEYLASIDSIGT 168 (945)
Q Consensus 94 ~~~~~l---~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~-~h~-~~V~~lafspdg~~Las~s~Dg~ 168 (945)
++.... ..|++.|+++.+++.|++.++|+.||.|++||-..++++.++. .|. ..|++..|..+|+|+++++.|..
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 865433 3578899999999999999999999999999999988887774 454 56999999999999999999999
Q ss_pred EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC
Q 002266 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP 247 (945)
Q Consensus 169 I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp 247 (945)
|++|.+.+++.+..+.+.... +....-+...|.....+++.... .+.+.-||.++...+..+..+|.+.+..+.-||
T Consensus 329 vkLWEi~t~R~l~~YtGAg~t--grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTT--GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred eeeeeecCCceEEEEecCCcc--cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence 999999999998887653211 11112234567777777777654 567999999999888777777999999999999
Q ss_pred CCCEEEEEECCCeEEEEEC
Q 002266 248 NGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~ 266 (945)
.+.-+++|+.|..+++|--
T Consensus 407 ~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCceeeecccceeeeeee
Confidence 9999999999999999953
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.1e-20 Score=203.70 Aligned_cols=244 Identities=19% Similarity=0.271 Sum_probs=205.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
+|...|.+++.|+||++|++++ .|..|.||+..+. .....+.+|.+.|.+++|-.....|++++.|..|++|++....
T Consensus 200 ~h~keil~~avS~Dgkylatgg-~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGG-RDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecC-CCceEEEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 6778899999999999999997 9999999999887 5567789999999999999888899999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
.+.++.+|...|..|....-++.+-+|+.|+++++|++... ....+.+|.+.+-|++|-. ...+++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence 89999999999999999888888888889999999999443 3456788999999999984 567999999999999999
Q ss_pred cCCeeeeeecccCCCCCC-----CCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEeecCCCCCCeEEEEE
Q 002266 175 QSGRELHNLKRVAPDIGS-----DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA----EKLFSLRGDHVQPICFLSW 245 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~-----~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~----~~~~~~~~~h~~~I~~l~f 245 (945)
...+++.+.....+.... ++..|++++..|...++++|+.+|.|++|-+..+ .++..+. ..+-|++++|
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f 433 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAF 433 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEE
Confidence 999888876543332221 2347899999999999999999999999998877 3444444 5678999999
Q ss_pred cCCCCEEEEE-ECCCeEEEE
Q 002266 246 SPNGKYMATS-SLDRQILIW 264 (945)
Q Consensus 246 Spdg~~Lasg-s~Dg~I~IW 264 (945)
+++|++|++| +....+-=|
T Consensus 434 ~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 434 SNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccCCCEEEEeccccccccee
Confidence 9999976665 333333333
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.5e-20 Score=191.64 Aligned_cols=262 Identities=18% Similarity=0.291 Sum_probs=203.1
Q ss_pred ccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCC-Ceee-eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 002266 59 HHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPG-GEFQ-TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG 135 (945)
Q Consensus 59 ~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~-g~~~-~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~ 135 (945)
...+.|.+|+||| ...++++++.||+|++|++.. |... +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4467899999999 556677899999999999976 4433 334568999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEEccCCC--EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSE--YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG 213 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~--~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs 213 (945)
+ +..+..|.++|..+.|-+... .|++|+.|.+|+.||++...++.++..+ ..++++ .--...+++++
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--------eRvYa~--Dv~~pm~vVat 173 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--------ERVYAA--DVLYPMAVVAT 173 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--------ceeeeh--hccCceeEEEe
Confidence 5 556778999999999988665 8999999999999999999888877542 223333 33345788899
Q ss_pred CCCeEEEEECCCCcEEE-eecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeee--ec-cC------C---CC
Q 002266 214 LKNDVVMYDRDTAEKLF-SLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDID--RQ-KF------D---DR 280 (945)
Q Consensus 214 ~dg~I~vwD~~t~~~~~-~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~--~~-~~------~---~~ 280 (945)
.+..|.+|+++.+...+ .......-.+.+++..++....|.|+..|.+.|..+..+.... .+ -| . ..
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 99999999998765432 2223344578899998888888999999999999987752211 11 11 1 24
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEecCCCCCCCC---CCCCCCCCccCCCCce
Q 002266 281 ICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKS---PTEDIPSSRSNYNGLL 331 (945)
Q Consensus 281 V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~ 331 (945)
|.+++|+|.-..|++++.||++.+||-.....++. ...+++...++.++..
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 78999999988999999999999999766555433 3345555556555554
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2e-20 Score=209.94 Aligned_cols=293 Identities=21% Similarity=0.286 Sum_probs=226.3
Q ss_pred CCCCCEEEEEECCCCC--EEEEEEcCCCeEEEEcCCCCc------------------------ccc------cccccccc
Q 002266 15 GNAASFCSILWDQQAH--HLVTASSSETTISIHDPLLPS------------------------NLP------KILRHHRD 62 (945)
Q Consensus 15 gh~~~V~svafspdg~--~L~t~g~~dg~V~IWd~~~~~------------------------~~~------~~l~~h~~ 62 (945)
||.+.|.+++|...+. +++++++.|..|+||.+.... ... ..+.+|.+
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 7779999999987554 566666799999999753222 000 23458999
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcCCC--e-----eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFPGG--E-----FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG 135 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g--~-----~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~ 135 (945)
-|+++.|+|.+..|++++.|.++.+|.-.+. - .+..+.+..+......|+|+++.+++-+..|..++|-..+.
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 9999999999999999999999999986543 1 12223344566889999999999999999999999984432
Q ss_pred ---eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC-----------------------------------
Q 002266 136 ---SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG----------------------------------- 177 (945)
Q Consensus 136 ---~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~----------------------------------- 177 (945)
.....+.+|...|++++|+|.|++|++.+.|.+-|+|-.-..
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE 428 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc
Confidence 344456799999999999999999999999988777543200
Q ss_pred eeeeeeccc-------------------------------------C---------------------------------
Q 002266 178 RELHNLKRV-------------------------------------A--------------------------------- 187 (945)
Q Consensus 178 ~~i~~~~~~-------------------------------------~--------------------------------- 187 (945)
+.++.+..+ .
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 001111000 0
Q ss_pred ----------CCCCCCCCCceEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEE
Q 002266 188 ----------PDIGSDPSSMNVLSWSPDGETLAVPGLKN-----DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYM 252 (945)
Q Consensus 188 ----------~~~~~~~~~i~~l~~spdg~~La~gs~dg-----~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~L 252 (945)
.+..+|...|.+++.+|+|+++|+++... .|++|+..++..+..+.+ |.-.|+.++|||||+||
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEE
Confidence 00012225689999999999999988654 599999999999888887 99999999999999999
Q ss_pred EEEECCCeEEEEECCCCeeee-----eccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 253 ATSSLDRQILIWDVGKKLDID-----RQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 253 asgs~Dg~I~IWD~~~~~~i~-----~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
++.+.|+++.+|......... ...|..-|++..|+|++.++++++.|.+|.+|...
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 999999999999985433322 24577789999999999999999999999999764
No 122
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=203.20 Aligned_cols=290 Identities=18% Similarity=0.230 Sum_probs=221.2
Q ss_pred CCCCCEEEEEECCCCC-EEEEEEcCCCeEEEEcCCC---CccccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEE
Q 002266 15 GNAASFCSILWDQQAH-HLVTASSSETTISIHDPLL---PSNLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYK 89 (945)
Q Consensus 15 gh~~~V~svafspdg~-~L~t~g~~dg~V~IWd~~~---~~~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwd 89 (945)
-+.++|++++|+|... .++++|...|.|-+||+.+ ...-...+..|..+|.+|.|+| +...+++.+.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 4568999999999887 7777777999999999842 2233445678999999999999 457888999999999999
Q ss_pred cCCCeeeeeccc--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeE-EEEEecCCCCEEEEEEccC-CCEEEEEeC
Q 002266 90 FPGGEFQTNITR--FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI-ARVLKGHKGPVTGLAFDPN-SEYLASIDS 165 (945)
Q Consensus 90 l~~g~~~~~l~~--~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~l~~h~~~V~~lafspd-g~~Las~s~ 165 (945)
+..+.....+.. ....+..+.|+.+...++.+..-|...+||++++.. ...+.-|...|++|+++|- ..+|++++.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 987754433333 455678888988888888888888999999998654 5667778899999999995 457899999
Q ss_pred CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC----CCcEEEeecCCCC--C-
Q 002266 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD----TAEKLFSLRGDHV--Q- 238 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~----t~~~~~~~~~~h~--~- 238 (945)
|++++|||++.-..... ..-....|...|++..|||.|-.|++.+.|..|+|||.. ...+..++...+. .
T Consensus 344 D~T~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred CcceeeeehhhhcCCCC---cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc
Confidence 99999999987533222 011122567789999999987779999999999999984 3334444442221 1
Q ss_pred -CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC--CCCeeE-EEEecCCCE-EEEEEcCCeEEEEec
Q 002266 239 -PICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF--DDRICC-MAWKPIGNA-LAVIDVMGKYGVWES 307 (945)
Q Consensus 239 -~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~--~~~V~~-la~spdg~~-Las~s~DG~I~iWd~ 307 (945)
......|.|+..++++|-.-..|-|+|-..++.+..... ...|++ ..|+|-+.. ++.++..|.|+||..
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 233457999999999999999999999999886665322 234554 479998884 445567789999854
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.3e-20 Score=179.65 Aligned_cols=244 Identities=19% Similarity=0.297 Sum_probs=200.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc----cccccccccccceEEEEEecC----CCEEEEEE-cCCcE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS----NLPKILRHHRDGVTALALSPN----STCLASGS-IDHSV 85 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~----~~~~~l~~h~~~V~~la~spd----g~~Lasgs-~Dg~V 85 (945)
-|.+.|+|.+|+|+|+.|++++ +|.+|++.-..... .....+.-|.+.|+.++|-.+ |.+|++++ .|..|
T Consensus 87 hhkgsiyc~~ws~~geliatgs-ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGS-NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred ccCccEEEEEecCccCeEEecC-CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 3568999999999999999986 99999986543221 122346678999999999753 45777754 46778
Q ss_pred EEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec--C-----CCCEEEEEEccCCC
Q 002266 86 KLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG--H-----KGPVTGLAFDPNSE 158 (945)
Q Consensus 86 ~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~--h-----~~~V~~lafspdg~ 158 (945)
++-|...|+....+.+|++.|..+ ++-+|-.+++|+.|.+|++||++-..++.++.. | ...|.+++.+|.|+
T Consensus 166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 888889999999999999999876 445788999999999999999998888777642 2 25799999999999
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEeecCC
Q 002266 159 YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA---EKLFSLRGD 235 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~---~~~~~~~~~ 235 (945)
+|++|..|....+||++.++.++.+. .|...|.++.|+|...|+++++.|..|++-|+... +....+.+.
T Consensus 245 ll~sg~~dssc~lydirg~r~iq~f~-------phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMIQRFH-------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred eeeeccCCCceEEEEeeCCceeeeeC-------CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999999999999999999988875 35577899999999999999999999999998732 122223345
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002266 236 HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 236 h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~ 267 (945)
|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88888899999998889999999999999764
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.8e-20 Score=189.24 Aligned_cols=252 Identities=21% Similarity=0.330 Sum_probs=197.3
Q ss_pred cccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC----eeeeecccCCCCEEEEEEec--CCCEEEEEECCCcEEE
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG----EFQTNITRFTLPIRVLAFNK--SGSMLAAAGDDEGIKL 129 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g----~~~~~l~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~i 129 (945)
+..+|.+-|+++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|..+|+++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 34578899999999999999999999999999996533 45566778999999999976 5899999999999999
Q ss_pred EEcC---------CCeEEEEEecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeee------eeecccCCCCCC
Q 002266 130 INTI---------DGSIARVLKGHKGPVTGLAFDP--NSEYLASIDSIGTVIYWELQSGREL------HNLKRVAPDIGS 192 (945)
Q Consensus 130 wd~~---------~~~~~~~l~~h~~~V~~lafsp--dg~~Las~s~Dg~I~iwDl~t~~~i------~~~~~~~~~~~~ 192 (945)
|.-. ......++......|+++.|.| -|-.||+++.||.++||+.-..-.+ +.+.......+.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9752 1124456677789999999999 4668999999999999987554322 223322223334
Q ss_pred CCCCceEEEEcCC---CCEEEEEeCC-----CeEEEEECCC----CcEEEeecCCCCCCeEEEEEcCC-C---CEEEEEE
Q 002266 193 DPSSMNVLSWSPD---GETLAVPGLK-----NDVVMYDRDT----AEKLFSLRGDHVQPICFLSWSPN-G---KYMATSS 256 (945)
Q Consensus 193 ~~~~i~~l~~spd---g~~La~gs~d-----g~I~vwD~~t----~~~~~~~~~~h~~~I~~l~fSpd-g---~~Lasgs 256 (945)
+..+..|+.|+|. ..+|++|+.+ +.++||.... +..+.++.+ |..+|++++|.|+ | ..||+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeeeccccCCceeeEEEee
Confidence 5567789999983 5689998865 4788887643 345666775 9999999999995 3 4789999
Q ss_pred CCCeEEEEECCCCe--------------------eee-eccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 257 LDRQILIWDVGKKL--------------------DID-RQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 257 ~Dg~I~IWD~~~~~--------------------~i~-~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
.|| |+||.+.... .+. .-.|.+.|+.+.|+-.|..|++.+.||.|++|....
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 999 9999987311 111 235788999999999999999999999999998653
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.2e-21 Score=220.05 Aligned_cols=238 Identities=21% Similarity=0.345 Sum_probs=190.2
Q ss_pred EEEEEECCC-CCEEEEEEcCCCeEEEEcCCCC--ccccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCCCee
Q 002266 20 FCSILWDQQ-AHHLVTASSSETTISIHDPLLP--SNLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 20 V~svafspd-g~~L~t~g~~dg~V~IWd~~~~--~~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
+..|.|+.- .++|||+ +..|.|.+||+... ......+..|...++++.|++ ...+|++|+.||+|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~-s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATC-STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheee-cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455678754 4455665 59999999999763 344567889999999999998 557999999999999999999888
Q ss_pred eeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCe-EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 96 QTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGS-IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~-~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
..++.+....|+++.|+| .+..++++.+.|.+.+||++... +...+..|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888888888999999999 67899999999999999998754 5677889999999999999999999999999999999
Q ss_pred ccCCee--eeeecccCCCCCCCCCCceEEEEcCCC-CEEEEEeC--CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-
Q 002266 174 LQSGRE--LHNLKRVAPDIGSDPSSMNVLSWSPDG-ETLAVPGL--KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP- 247 (945)
Q Consensus 174 l~t~~~--i~~~~~~~~~~~~~~~~i~~l~~spdg-~~La~gs~--dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp- 247 (945)
+.+.+. +.++.. ..++.++.|-|.. ..|++++. |-.|+|||++..-..+.....|...++.++|..
T Consensus 249 ~t~~~~~~~~tInT--------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 249 MTDSRAKPKHTINT--------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSG 320 (839)
T ss_pred ccCCCccceeEEee--------cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCC
Confidence 986533 333322 3568899999965 45666543 678999999876544433334999999999976
Q ss_pred CCCEEEEEECCCeEEEEEC
Q 002266 248 NGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~ 266 (945)
+...|.+++.||.|..-.+
T Consensus 321 d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 321 DRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred CceeeEeecCccHHHHhhh
Confidence 4456777777776654433
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=191.18 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=218.3
Q ss_pred cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 002266 52 NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 52 ~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd 131 (945)
.+...+.+|.+.|+.++.......+.+++.|.+.+||.+++|.++..+.+|.+.|.+|.|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45667889999999999887777899999999999999999999999999999999999999999999999999999996
Q ss_pred c------CC------------------------------C----eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 132 T------ID------------------------------G----SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 132 ~------~~------------------------------~----~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
. .. + .++..+.+|.+.|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 10 0 134567889999999999999999999999999999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcCCCC
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
||+.++..+..+. +|....+.++-+|..+++++.+.|.+.++||.+..- .+..|.+ |...|+++.|..+.
T Consensus 299 wDVEtge~v~~Lt-------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd- 369 (481)
T KOG0300|consen 299 WDVETGEVVNILT-------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDD- 369 (481)
T ss_pred eeeccCceecccc-------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cccceeEEEEecCC-
Confidence 9999999888776 455667778999999999999999999999998443 3455665 99999999998764
Q ss_pred EEEEEECCCeEEEEECCCC-eeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 251 YMATSSLDRQILIWDVGKK-LDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 251 ~Lasgs~Dg~I~IWD~~~~-~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
.+++|+.|.+|+|||++.. ..+..+....++..++.+..+..|+.-..+..|++||+.-..
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 5889999999999999774 566778888999999999988899999999999999986443
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=4.4e-19 Score=192.63 Aligned_cols=273 Identities=15% Similarity=0.238 Sum_probs=218.2
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccc--cccccc-ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLP--KILRHH-RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~--~~l~~h-~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
..|..+.|+|.+..|++++ ..+.+..|+...+.... .++..+ ..-|.|++|.++|. +++|..+|.|.||+..+.+
T Consensus 201 e~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred ceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 5578889999998888776 68899999987664222 223332 36799999999986 6789999999999998877
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe--------------------------------------
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS-------------------------------------- 136 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-------------------------------------- 136 (945)
..+....|.+.|.+++...+|.+|- |+.|..|..||-.-.+
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 7777779999999999999997666 9999999999832000
Q ss_pred --EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 137 --IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 137 --~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
......+|......++.+|+.+.+++++.|+.+++|+ ..+.+.+... ..+..++.|+|.| .+++|+.
T Consensus 358 ~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--------~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--------EDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe--------cCceeEeeccCcc-eEEEeec
Confidence 0011235788889999999999999999999999999 4444443321 2556889999999 9999999
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeeee--ccCCCCeeEEEEecCCC
Q 002266 215 KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK-LDIDR--QKFDDRICCMAWKPIGN 291 (945)
Q Consensus 215 dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~-~~i~~--~~~~~~V~~la~spdg~ 291 (945)
.|...+.|..+... .++.. ...+++.+.|+|+|.+||.|+.|+.|+||.+... ..+.+ .-+..+|+.+.|++|++
T Consensus 427 ~G~w~V~d~e~~~l-v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 427 TGRWFVLDTETQDL-VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ 504 (626)
T ss_pred cceEEEEeccccee-EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc
Confidence 99999999998544 44444 2789999999999999999999999999998654 33333 22458999999999999
Q ss_pred EEEEEEcCCeEEEEe
Q 002266 292 ALAVIDVMGKYGVWE 306 (945)
Q Consensus 292 ~Las~s~DG~I~iWd 306 (945)
+|.+-+.|-.|..|.
T Consensus 505 ~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWK 519 (626)
T ss_pred eEEeccCceEEEEEc
Confidence 999999999999993
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=201.81 Aligned_cols=270 Identities=16% Similarity=0.153 Sum_probs=207.0
Q ss_pred CCeEEEEcCCCCcccccccccc-ccceEEEEEecCCCEEEEEE-cCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC
Q 002266 39 ETTISIHDPLLPSNLPKILRHH-RDGVTALALSPNSTCLASGS-IDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~~~l~~h-~~~V~~la~spdg~~Lasgs-~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~ 116 (945)
...+.+||+.++.... .+++. ...-.++..- .+.+++++. ....|.+|.+............+++|.+++-+|+|.
T Consensus 17 ~~~~~~~dl~TGt~~~-~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLL-QYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred CcceeEEecCCCceeE-EecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence 3459999999885433 33332 1111111111 235666654 346799999876554444445688899999999999
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCee-eee-ecccCCCCCCCC
Q 002266 117 MLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRE-LHN-LKRVAPDIGSDP 194 (945)
Q Consensus 117 ~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~-i~~-~~~~~~~~~~~~ 194 (945)
+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+-||.+|++|+.||.|.+|++..--. ... ...+......|.
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 999999999999999999999999999999999999999999999999999999999754210 000 111122344567
Q ss_pred CCceEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--
Q 002266 195 SSMNVLSWSPD--GETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKL-- 270 (945)
Q Consensus 195 ~~i~~l~~spd--g~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~-- 270 (945)
-+|+.+...+. ..+|++++.|.++++||+..+..+.++. ....+.+++.+|-++.++.|+.+|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 77888877664 4689999999999999999999888776 56799999999999999999999999998874422
Q ss_pred ---------------eeeeccCCC--CeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 271 ---------------DIDRQKFDD--RICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 271 ---------------~i~~~~~~~--~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
.....+|.. .|+|++.+-||..|++|+.||+|.|||+.....
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 111245555 899999999999999999999999999866554
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=207.11 Aligned_cols=300 Identities=15% Similarity=0.184 Sum_probs=238.4
Q ss_pred cccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCC-EEEEEEcCCcEEEE
Q 002266 10 EAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST-CLASGSIDHSVKLY 88 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~-~Lasgs~Dg~V~iw 88 (945)
+... ++...|+++.=+|-=..+++|. .+|+|.|+++..++ ....++...+.|++++|.-||. .+++|+..|.+.+|
T Consensus 196 ~~f~-~~~s~IT~ieqsPaLDVVaiG~-~~G~ViifNlK~dk-il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 196 YTFQ-EFFSRITAIEQSPALDVVAIGL-ENGTVIIFNLKFDK-ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred EEec-ccccceeEeccCCcceEEEEec-cCceEEEEEcccCc-EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 3344 5668999999999988888886 99999999998874 4555555469999999999996 55666777999999
Q ss_pred EcCCCeeeeecc-cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC--CC--eEEEEEecCCCCEEEEEEc-cCCCEEEE
Q 002266 89 KFPGGEFQTNIT-RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI--DG--SIARVLKGHKGPVTGLAFD-PNSEYLAS 162 (945)
Q Consensus 89 dl~~g~~~~~l~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~--~~--~~~~~l~~h~~~V~~lafs-pdg~~Las 162 (945)
|++..+....+. .|.+.|..+.|.|....+++++.|..+++|=.. +| ..++.-.+|..+..||.|. .+|.++.+
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 999888776655 677899999999999999999999988877544 33 3455667899999999998 68889999
Q ss_pred EeCCCcEEEEEccCCee---------------eee-------------ec--------------cc--------------
Q 002266 163 IDSIGTVIYWELQSGRE---------------LHN-------------LK--------------RV-------------- 186 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~---------------i~~-------------~~--------------~~-------------- 186 (945)
++.|++++.+++..... +.. +. .+
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 99999888887643100 000 00 00
Q ss_pred --------CCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeec--CCCCCCeEEEEEcCCCCEEEEEE
Q 002266 187 --------APDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLR--GDHVQPICFLSWSPNGKYMATSS 256 (945)
Q Consensus 187 --------~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~--~~h~~~I~~l~fSpdg~~Lasgs 256 (945)
..........+++++.++.|++.++|+..|.|-+|++.+|-....+. ..|.++|+.++...-++.+++++
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~ 512 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG 512 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc
Confidence 00000112457889999999999999999999999999998888772 35999999999999999999999
Q ss_pred CCCeEEEEECCCCeee------------------------------------------eeccCCCCeeEEEEecCCCEEE
Q 002266 257 LDRQILIWDVGKKLDI------------------------------------------DRQKFDDRICCMAWKPIGNALA 294 (945)
Q Consensus 257 ~Dg~I~IWD~~~~~~i------------------------------------------~~~~~~~~V~~la~spdg~~La 294 (945)
.+|.+.+||+.++.++ ...+|...|++++|||||++|+
T Consensus 513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE
Confidence 9999999998775421 0135788999999999999999
Q ss_pred EEEcCCeEEEEecCCCCC
Q 002266 295 VIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 295 s~s~DG~I~iWd~~~~~~ 312 (945)
+++.|++|++||+.++..
T Consensus 593 sasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTL 610 (910)
T ss_pred EeecCCcEEEEeccCcce
Confidence 999999999999987664
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.7e-21 Score=219.27 Aligned_cols=235 Identities=21% Similarity=0.322 Sum_probs=211.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
-|...|.|+..-..++.+++|| .+..+-+|.+... .....+.+|..+|.++.|+++..+|++|+.+|+|++||+..++
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg-~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGG-EDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCC-CceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 4668899988877778888876 8989999998766 3345588999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
.+..+.+|...+..+.|+|-+.++|.|+.|+.+++||++...+...+.+|...|.++.|+|+|.++++++.|.+++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMAT 254 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Las 254 (945)
..|+.+..+. .|.+.+..+.|+|..-+++.|+.|+.|++||+++.+.+..... ....|.++.|+|+|..+++
T Consensus 184 ~agk~~~ef~-------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 184 TAGKLSKEFK-------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-ETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred cccccccccc-------cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-ccCCceeeeecCCceeeec
Confidence 9998887776 3456778889999999999999999999999999888877766 5788999999999999998
Q ss_pred EECCC
Q 002266 255 SSLDR 259 (945)
Q Consensus 255 gs~Dg 259 (945)
|....
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 86543
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=202.42 Aligned_cols=288 Identities=15% Similarity=0.179 Sum_probs=212.7
Q ss_pred EEECC--CCCEEEEEEcCCCeEEEEcCCCCccc-----cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 23 ILWDQ--QAHHLVTASSSETTISIHDPLLPSNL-----PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 23 vafsp--dg~~L~t~g~~dg~V~IWd~~~~~~~-----~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
+.|++ ..+++++.+..+|.|.++|....... ......|...|..+.|.|....|++++.|.++++||+..+.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55653 45566666679999999997543211 234557999999999999667899999999999999999988
Q ss_pred eee--cccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCe---------------------------EEEEEecCC
Q 002266 96 QTN--ITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDGS---------------------------IARVLKGHK 145 (945)
Q Consensus 96 ~~~--l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~---------------------------~~~~l~~h~ 145 (945)
... +.+|...|.+++|.+. ...|++|+.||.|.|||++-.. .+.....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 876 8899999999999994 5678999999999999986322 011112344
Q ss_pred CCEEE---EEEccCCCEEEEEeC-CCcEEEEEccCCeeeeeecccCC-CC---CCCCCCceEEEEcCCCCEEEEEeCCCe
Q 002266 146 GPVTG---LAFDPNSEYLASIDS-IGTVIYWELQSGRELHNLKRVAP-DI---GSDPSSMNVLSWSPDGETLAVPGLKND 217 (945)
Q Consensus 146 ~~V~~---lafspdg~~Las~s~-Dg~I~iwDl~t~~~i~~~~~~~~-~~---~~~~~~i~~l~~spdg~~La~gs~dg~ 217 (945)
..|.+ +.+..|...||+++. |+.|+|||++............. .. ......+.++.....|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44555 556678888999887 99999999998654433321110 01 111345677888888999999889999
Q ss_pred EEEEECCCCc--EEEeecCCCCCCe-EEEEEcCCCCEEEEEECCCeEEEEECCCCeee--eeccCCCCeeEEEEecCCC-
Q 002266 218 VVMYDRDTAE--KLFSLRGDHVQPI-CFLSWSPNGKYMATSSLDRQILIWDVGKKLDI--DRQKFDDRICCMAWKPIGN- 291 (945)
Q Consensus 218 I~vwD~~t~~--~~~~~~~~h~~~I-~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i--~~~~~~~~V~~la~spdg~- 291 (945)
|++|++.+.. ++..+.+.....+ ..-..+|++.+|++|+.|...+||.+.+...- ...+|.-.|++++|.|..-
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 9999998654 3444444111222 22357899999999999999999999886543 3367888999999998643
Q ss_pred EEEEEEcCCeEEEEecCCC
Q 002266 292 ALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 292 ~Las~s~DG~I~iWd~~~~ 310 (945)
-+++++.|-.++||++..+
T Consensus 375 ~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceeeccCcceEEEeccCc
Confidence 4778899999999998543
No 132
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.6e-19 Score=192.20 Aligned_cols=288 Identities=20% Similarity=0.257 Sum_probs=220.3
Q ss_pred CCEEEEEECCCCC-EEEEEEcCCCeEEEEcCCCCc--------cccccccccccceEEEEEecCCCEEEEEEcCCcEEEE
Q 002266 18 ASFCSILWDQQAH-HLVTASSSETTISIHDPLLPS--------NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88 (945)
Q Consensus 18 ~~V~svafspdg~-~L~t~g~~dg~V~IWd~~~~~--------~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iw 88 (945)
.+|.++.|.+++. .|+++| .|..|+||.+.... .....+..|...|+++.|+|+|.+|++|+.+|.|.+|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G-~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAG-GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CceEEEEeccCcccceeccc-CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 7899999999887 788887 89999999865432 1224567899999999999999999999999999999
Q ss_pred EcC--------C--------CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEE
Q 002266 89 KFP--------G--------GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLA 152 (945)
Q Consensus 89 dl~--------~--------g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~la 152 (945)
... + ......+.+|...|..++|+|++.++++++-|..+++||+..|.....+..|...|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 865 2 123345667889999999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCeeeeeecc--cCCCCC----------CC----CCCceEEEEcCCCCEEEEEeC--
Q 002266 153 FDPNSEYLASIDSIGTVIYWELQSGRELHNLKR--VAPDIG----------SD----PSSMNVLSWSPDGETLAVPGL-- 214 (945)
Q Consensus 153 fspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~--~~~~~~----------~~----~~~i~~l~~spdg~~La~gs~-- 214 (945)
|+|-++++++-+.|...+++++...+.+..... ...... .| ......++|+|+|.+++++..
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 999999999999999888888766544433320 000000 01 123467899999999998643
Q ss_pred -------CCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcC------------------CCCEEEEEECCCeEEEEECCC
Q 002266 215 -------KNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSP------------------NGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 215 -------dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSp------------------dg~~Lasgs~Dg~I~IWD~~~ 268 (945)
-+..++|+....+ +...++. ...+...+.|+| -+-.+|.++ ...|+|||.++
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPS-PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCC-CCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 2345677765433 4445554 445555666655 122344555 56799999999
Q ss_pred Ceeeeec--cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 269 KLDIDRQ--KFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 269 ~~~i~~~--~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
..++... -|-..|+.++|+++|..|+..+.||...+-...
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 8777763 367899999999999999999999987765443
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=2e-20 Score=202.27 Aligned_cols=238 Identities=17% Similarity=0.213 Sum_probs=204.7
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc-ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN-LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~-~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
.+-|.+|.+.|||+.|+++| .-.++.|||+..+.. +...+....-.+++++.+||.+..++++.||.|.|||+.+...
T Consensus 465 dnyiRSckL~pdgrtLivGG-eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecCCCceEEecc-ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 46689999999999999998 788999999987642 2223333345688999999999999999999999999999999
Q ss_pred eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 002266 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~ 175 (945)
++.+.+|+..+.||.++++|..|-+|+-|.+|+.||++++..+.... ....|.++.++|++.+|++|-.++.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999987665433 45789999999999999999999988887764
Q ss_pred CCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEE
Q 002266 176 SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS 255 (945)
Q Consensus 176 t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasg 255 (945)
.... ..+ ..|.+.|.++.|.+.|+++++.+.|+.+..|.+--|..++..+ ....|.++.+|.|.+||+||
T Consensus 623 kp~k-yql-------hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 623 KPEK-YQL-------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred Cccc-eee-------cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEec
Confidence 4322 222 2456788999999999999999999999999999998888876 56899999999999999999
Q ss_pred ECCCeEEEEEC
Q 002266 256 SLDRQILIWDV 266 (945)
Q Consensus 256 s~Dg~I~IWD~ 266 (945)
+.|..-.||.+
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99988888865
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.9e-19 Score=198.95 Aligned_cols=278 Identities=18% Similarity=0.247 Sum_probs=213.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCC--EEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST--CLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~--~Lasgs~Dg~V~iwdl~~ 92 (945)
||.+.|.||..+|.|.+|++|+ .||+|+||.+.++.. ...+.. .+.|.||+|+|.+. .||++-. ..+.|.+..-
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGs-dDGtvriWEi~TgRc-vr~~~~-d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~ 473 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGS-DDGTVRIWEIATGRC-VRTVQF-DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIF 473 (733)
T ss_pred ccCCeEEEEEecCCcceeeecC-CCCcEEEEEeecceE-EEEEee-cceeEEEEecCCCCceeEEEEec-CceEEeCccc
Confidence 7889999999999999999986 999999999998844 443332 46899999999663 4444332 2343333211
Q ss_pred C------------------------------------e-eeeecccCCCCEEEEEEecCCCEEEEEECC---CcEEEEEc
Q 002266 93 G------------------------------------E-FQTNITRFTLPIRVLAFNKSGSMLAAAGDD---EGIKLINT 132 (945)
Q Consensus 93 g------------------------------------~-~~~~l~~~~~~V~~l~fspdg~~Lasgs~D---g~I~iwd~ 132 (945)
| + -+.....|..+|+.+.|+..|.||++..-+ ..|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1 0 012333467789999999999999998654 46889999
Q ss_pred CCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE
Q 002266 133 IDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP 212 (945)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g 212 (945)
.......-+....+.|.++.|+|...+|++++. ..|+|||+..+..+..+.. ....|..++.||.|..|++|
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-------g~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-------GSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-------CCeeeeeeeecCCCCeEEEe
Confidence 877666667667789999999999999998876 6799999988665554432 23557889999999999999
Q ss_pred eCCCeEEEEECCCCcE-EEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-------CCCeeeee---ccCC---
Q 002266 213 GLKNDVVMYDRDTAEK-LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV-------GKKLDIDR---QKFD--- 278 (945)
Q Consensus 213 s~dg~I~vwD~~t~~~-~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~-------~~~~~i~~---~~~~--- 278 (945)
+.|+.+..||+.-... ..++.. |...+++|+|++.-.++++|+.||++.||.- .+..++.. .+|.
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 9999999999986654 444444 9999999999999999999999999999852 22222222 2343
Q ss_pred -CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 279 -DRICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 279 -~~V~~la~spdg~~Las~s~DG~I~iW 305 (945)
-.|....|||...+|++++.||+|++|
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEee
Confidence 348889999999999999999999999
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=9.6e-20 Score=203.76 Aligned_cols=252 Identities=17% Similarity=0.284 Sum_probs=212.2
Q ss_pred cCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec---CCCEEEEEEcCCcEEEEEc
Q 002266 14 CGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP---NSTCLASGSIDHSVKLYKF 90 (945)
Q Consensus 14 ~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp---dg~~Lasgs~Dg~V~iwdl 90 (945)
++....|.+++.||+|++|+++- .-|.++||++... .....+..|...|.|+.|+. ..++||+++.|..|.|||+
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGD-r~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGD-RGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred cCcccceEEEEECCCcceecccC-ccCceEEEEehhh-hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 35567899999999999999875 8899999998765 45667789999999999986 3478999999999999998
Q ss_pred CC-CeeeeecccCCCCEEEEEEecCC--CEEEEEECCCcEEEEEcCCCeEEEEEe-----cCCCCEEEEEEccCCCEEEE
Q 002266 91 PG-GEFQTNITRFTLPIRVLAFNKSG--SMLAAAGDDEGIKLINTIDGSIARVLK-----GHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 91 ~~-g~~~~~l~~~~~~V~~l~fspdg--~~Lasgs~Dg~I~iwd~~~~~~~~~l~-----~h~~~V~~lafspdg~~Las 162 (945)
.. -.++.++..|...|+++.|..+| ..+++++.|..|.+--.+.......+. .....++.++..|..+++++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 54 45677889999999999999877 778999999877643332211111121 12367899999999999999
Q ss_pred EeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEE
Q 002266 163 IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF 242 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~ 242 (945)
++.|..|+||++.+++..+.+++.. .+.+....+...|.|.||++.+.|.++.+||..+++++....+ |...|+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~----~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-HsE~VTG 688 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSR----DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HSEAVTG 688 (1080)
T ss_pred EecccceEEEeccccceeeeecccc----cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cchheee
Confidence 9999999999999999999987643 4556677899999999999999999999999999999999988 9999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeee
Q 002266 243 LSWSPNGKYMATSSLDRQILIWDVGKKLDI 272 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i 272 (945)
+.|.+|-+.|++.+.||.|.||.+.....+
T Consensus 689 ~kF~nDCkHlISvsgDgCIFvW~lp~~mii 718 (1080)
T KOG1408|consen 689 VKFLNDCKHLISVSGDGCIFVWKLPLTMII 718 (1080)
T ss_pred eeecccchhheeecCCceEEEEECchhHhH
Confidence 999999999999999999999998764433
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.1e-19 Score=183.65 Aligned_cols=242 Identities=18% Similarity=0.288 Sum_probs=193.7
Q ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE
Q 002266 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR 139 (945)
Q Consensus 60 h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 139 (945)
....|..+.|+|.+..|++++.||.+++|++........ ..|..++.+++|.+ ...+++|+-||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 357899999999888999999999999999987754444 45899999999986 478999999999999999887654
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEE
Q 002266 140 VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVV 219 (945)
Q Consensus 140 ~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~ 219 (945)
.+..|..+|.||.+.+....+++|+.|++|++||.+.......+.. ...|.++ +-.|..|++|+.+..|.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--------~kkVy~~--~v~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--------GKKVYCM--DVSGNRLVVGTSDRKVL 158 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--------CceEEEE--eccCCEEEEeecCceEE
Confidence 4556999999999999888999999999999999987544433322 2245544 44688999999999999
Q ss_pred EEECCCCcEEEeec-CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeee-----eccC---------CCCeeEE
Q 002266 220 MYDRDTAEKLFSLR-GDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDID-----RQKF---------DDRICCM 284 (945)
Q Consensus 220 vwD~~t~~~~~~~~-~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~-----~~~~---------~~~V~~l 284 (945)
+||+++.....+.. ....-.+.++++-|++.-.++++.||.|.+=.++...... ..-| -.+|.++
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 99999877654332 2245678999999998889999999999987665542211 1111 2478999
Q ss_pred EEecCCCEEEEEEcCCeEEEEecCCCCCCC
Q 002266 285 AWKPIGNALAVIDVMGKYGVWESVVPSSMK 314 (945)
Q Consensus 285 a~spdg~~Las~s~DG~I~iWd~~~~~~~~ 314 (945)
+|+|-...||+|+.||.|.+||+.....+.
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhhh
Confidence 999998899999999999999998776643
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.6e-17 Score=180.67 Aligned_cols=243 Identities=16% Similarity=0.181 Sum_probs=201.3
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee-eccc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT-NITR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIA 138 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~-~l~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~ 138 (945)
..+|+++||+.+.+.||.+-.+|.|.||++..+-+.. .+.+ ....|..++|++ +..|.+.+-+|.|.-||+.+++..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 5689999999999999999999999999998764332 3333 356899999995 556778888999999999999999
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeE
Q 002266 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDV 218 (945)
Q Consensus 139 ~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I 218 (945)
..+....+.|++++.+|.+..++.||.||.+..++...+........ ....+.+.+++|+|++..|+.|+.||.|
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-----~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL-----MRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec-----ccccceEEEEEecCCccEEEecccCceE
Confidence 99999999999999999999999999999777777776665443322 1235788999999999999999999999
Q ss_pred EEEECCCCcEEEeec----C---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCC
Q 002266 219 VMYDRDTAEKLFSLR----G---DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIG 290 (945)
Q Consensus 219 ~vwD~~t~~~~~~~~----~---~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg 290 (945)
++||..++..+.... + ....-|.++.|-.+ ..|++|...|.|.+||...+.++.. ..|...|.+++..+++
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 999999988766221 1 12234667777655 4799999999999999999999887 4578899999999999
Q ss_pred CEEEEEEcCCeEEEEecCCC
Q 002266 291 NALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 291 ~~Las~s~DG~I~iWd~~~~ 310 (945)
.++++++.|+.|..|.....
T Consensus 258 d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CeEEEccCCCceEEEEecCC
Confidence 99999999999998877654
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.3e-20 Score=195.63 Aligned_cols=242 Identities=19% Similarity=0.297 Sum_probs=202.6
Q ss_pred cccccccceEEEEEecCC-CEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 56 ILRHHRDGVTALALSPNS-TCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
.+.+|.++|.|++=+|.. ..+++|+.||.|+|||+....+...+..|.+.|+.|++.. ..++++++|.+|+.|-+..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 467899999999999976 7899999999999999999999999999999999999986 6789999999999999855
Q ss_pred CeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEe
Q 002266 135 GSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPG 213 (945)
Q Consensus 135 ~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs 213 (945)
....++.+ ...+..|.-+..+..+++|+. .|.|||.....++..+.. ....+.++.|+|- ...|++++
T Consensus 139 -~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw-------G~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 139 -PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW-------GADSISSVKFNPVETSILASCA 207 (433)
T ss_pred -Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeec-------CCCceeEEecCCCcchheeeec
Confidence 35566553 466777877777788888875 699999988777776653 2356789999995 45677777
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-eee-ccCCCCeeEEEEecCCC
Q 002266 214 LKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLD-IDR-QKFDDRICCMAWKPIGN 291 (945)
Q Consensus 214 ~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~-i~~-~~~~~~V~~la~spdg~ 291 (945)
.|+.|.+||+++..++..+. ....-+.++|+|.+--+++|+.|..++.||++.-.. +.. .+|.+.|.++.|+|.|+
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred cCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 99999999999999887765 345667899999888899999999999999976433 332 67888999999999999
Q ss_pred EEEEEEcCCeEEEEecCCCCC
Q 002266 292 ALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 292 ~Las~s~DG~I~iWd~~~~~~ 312 (945)
-+++|+.|.+|+||....+..
T Consensus 286 EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred hhccccccceEEEeecCCCcc
Confidence 999999999999999876543
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=3.4e-19 Score=200.30 Aligned_cols=234 Identities=21% Similarity=0.335 Sum_probs=195.2
Q ss_pred CCCCCEEE-EEECCCCC-EEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCS-ILWDQQAH-HLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~s-vafspdg~-~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~ 92 (945)
+|.+.|.+ ++|-+..+ .|++++ .|++|.+|..... ....++.+|...|.|++...++. +++|+.|.++++|..
T Consensus 55 ~~~g~i~~~i~y~e~~~~~l~~g~-~D~~i~v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~-- 129 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDKGRLVVGG-MDTTIIVFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI-- 129 (745)
T ss_pred cCcceeeccceeccccCcceEeec-ccceEEEEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--
Confidence 45566766 88876444 466665 9999999998665 56788999999999999888887 999999999999974
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
+++...+.+|+..|+.++.-|++ .+++|+.|.+|++|.- ++.++++.+|.+.|+++++-+++ .+++|+.||.|+.|
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w 205 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLW 205 (745)
T ss_pred hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEE
Confidence 56667799999999999999987 8999999999999984 78899999999999999999775 48889999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYM 252 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~L 252 (945)
++ ++..+.... +|...+.+++..+++..+++++.|+++++|+.. ++...+.. ....|.++++-++|. |
T Consensus 206 ~~-~ge~l~~~~-------ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-PttsiWsa~~L~NgD-I 273 (745)
T KOG0301|consen 206 DL-DGEVLLEMH-------GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGD-I 273 (745)
T ss_pred ec-cCceeeeee-------ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-CccceEEEEEeeCCC-E
Confidence 99 666666554 456778999988888999999999999999987 55555542 335899999888887 5
Q ss_pred EEEECCCeEEEEECCCC
Q 002266 253 ATSSLDRQILIWDVGKK 269 (945)
Q Consensus 253 asgs~Dg~I~IWD~~~~ 269 (945)
++|+.||.|+||.....
T Consensus 274 vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEeccCceEEEEEeccc
Confidence 66677999999988643
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=3.5e-18 Score=185.75 Aligned_cols=287 Identities=13% Similarity=0.186 Sum_probs=220.7
Q ss_pred CCCCEEEEEECCC--CCEEEEE-EcCCCeEEEEcCCCCccccccccccccceEEEEEecCC-CEEEEEEcCCcEEEEEcC
Q 002266 16 NAASFCSILWDQQ--AHHLVTA-SSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 16 h~~~V~svafspd--g~~L~t~-g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl~ 91 (945)
....|+|++|++- |.+|++. .+.+..+.|||...+.. ........+.|....|+|.+ +++++++ .|.+.+|+++
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~ 230 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLR 230 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhc-cCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEcc
Confidence 3477999999973 4555554 23567888999877643 33344456789999999955 5555554 5889999998
Q ss_pred CCeeeeec---cc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002266 92 GGEFQTNI---TR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG 167 (945)
Q Consensus 92 ~g~~~~~l---~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg 167 (945)
.+.+.... .. ....|.|++|.++|. +++|..+|.|.||+..+....+....|.+.|.+++.-.+|.+|- |+.|+
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDR 308 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDR 308 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccc
Confidence 87665432 22 245799999999886 68999999999999988888777779999999999999987555 99999
Q ss_pred cEEEEEccCCeeeeeeccc----------------------------------CCCCCCCCCCceEEEEcCCCCEEEEEe
Q 002266 168 TVIYWELQSGRELHNLKRV----------------------------------APDIGSDPSSMNVLSWSPDGETLAVPG 213 (945)
Q Consensus 168 ~I~iwDl~t~~~i~~~~~~----------------------------------~~~~~~~~~~i~~l~~spdg~~La~gs 213 (945)
.|..||- .-+.++..+.+ ......|......++.+|+...+++++
T Consensus 309 ki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 309 KIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred eEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 9999993 21111111100 000112334567788899999999999
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEE
Q 002266 214 LKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNAL 293 (945)
Q Consensus 214 ~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~L 293 (945)
.|+.+++|+ ..+++.+.. ...++.++.|+|.| .+|.|+..|...|.|.++...+.......++++++|+|+|.+|
T Consensus 388 qdk~v~lW~--~~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred CcceEEEcc--CCceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence 999999999 344444443 45688999999999 9999999999999999998888776668899999999999999
Q ss_pred EEEEcCCeEEEEecCCCCC
Q 002266 294 AVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 294 as~s~DG~I~iWd~~~~~~ 312 (945)
|.|+.|+.|+||.+.....
T Consensus 463 Avgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEecCCCeEEEEEECCCCc
Confidence 9999999999998876543
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.2e-18 Score=179.59 Aligned_cols=246 Identities=20% Similarity=0.322 Sum_probs=188.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc---cccccccccccceEEEEEec--CCCEEEEEEcCCcEEEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS---NLPKILRHHRDGVTALALSP--NSTCLASGSIDHSVKLYK 89 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~---~~~~~l~~h~~~V~~la~sp--dg~~Lasgs~Dg~V~iwd 89 (945)
+|..-|.++.|.+.|+++++|+ .|++|+|||...+. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCS-sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCS-SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeecccCceeeecc-CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 6779999999999999999997 99999999965443 23345678999999999987 689999999999999997
Q ss_pred cCC---------CeeeeecccCCCCEEEEEEec--CCCEEEEEECCCcEEEEEcCCCe------EEEEEe-------cCC
Q 002266 90 FPG---------GEFQTNITRFTLPIRVLAFNK--SGSMLAAAGDDEGIKLINTIDGS------IARVLK-------GHK 145 (945)
Q Consensus 90 l~~---------g~~~~~l~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~~~------~~~~l~-------~h~ 145 (945)
-.. .....++......|+++.|.| -|-.||+++.||.++||+..+.. +...+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 421 112344555678899999998 57789999999999999876532 222222 356
Q ss_pred CCEEEEEEccC---CCEEEEEeCC-----CcEEEEEccCCe-eeeeecccCCCCCCCCCCceEEEEcCC-C---CEEEEE
Q 002266 146 GPVTGLAFDPN---SEYLASIDSI-----GTVIYWELQSGR-ELHNLKRVAPDIGSDPSSMNVLSWSPD-G---ETLAVP 212 (945)
Q Consensus 146 ~~V~~lafspd---g~~Las~s~D-----g~I~iwDl~t~~-~i~~~~~~~~~~~~~~~~i~~l~~spd-g---~~La~g 212 (945)
.+..|+.|+|. ..+||+|+.+ +.++||....+. ...... ....+..+|+.++|.|+ | ..||++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva----~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA----ELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh----hcCCCCCcceeeeeccccCCceeeEEEe
Confidence 77889999984 3477777765 478899876543 322222 22367789999999995 3 478999
Q ss_pred eCCCeEEEEECCCC--------------------cEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002266 213 GLKNDVVMYDRDTA--------------------EKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 213 s~dg~I~vwD~~t~--------------------~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~ 267 (945)
+.|| |+||.+... +.+..+. .|.+.|..+.|.-.|..|++.+.||.|++|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD-DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc-CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 999998731 1222333 499999999999999999999999999999753
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.2e-19 Score=181.41 Aligned_cols=246 Identities=20% Similarity=0.260 Sum_probs=191.1
Q ss_pred eEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec
Q 002266 64 VTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG 143 (945)
Q Consensus 64 V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~ 143 (945)
..|+.|++.|.+||+|+.||.|.|||+.+...-..+..|..+|++++||++|+.|++++.|..|.+||+..|.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999988888899999999999999999999999999999999999999988887
Q ss_pred CCCCEEEEEEccCCC-EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEE
Q 002266 144 HKGPVTGLAFDPNSE-YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 144 h~~~V~~lafspdg~-~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD 222 (945)
...+|+...|+|... ..+++-.+..-.+-++..+. +..-..... +.......+..|++.|+++++|+..|.+.+||
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d-~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDD-GDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCc-cccccccccccccCCCCEEEEecCcceEEEEe
Confidence 679999999999443 33333334445555554432 111111011 11112223457899999999999999999999
Q ss_pred CCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eeeeeccC-----CCCeeEEEEecCC
Q 002266 223 RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK-------LDIDRQKF-----DDRICCMAWKPIG 290 (945)
Q Consensus 223 ~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~-------~~i~~~~~-----~~~V~~la~spdg 290 (945)
..+.+++..++......|..+.|+..|++|+.-+.|+.|+.|++..- ++-...+. ...-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999998887634478999999999999999999999999998631 21111121 2234578899999
Q ss_pred CEEEEEEc-CCeEEEEecCCCCCC
Q 002266 291 NALAVIDV-MGKYGVWESVVPSSM 313 (945)
Q Consensus 291 ~~Las~s~-DG~I~iWd~~~~~~~ 313 (945)
.+++.++. ...++||+-.+++..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred cEEEeccccceeEEEEecCCccee
Confidence 99887764 456999998888764
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1e-18 Score=180.46 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=188.2
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee------------------------------------ee
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF------------------------------------QT 97 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~------------------------------------~~ 97 (945)
...+++|.+.|++++|+.||++|++++.|++|++|++++-.. +.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 346789999999999999999999999999999999753210 00
Q ss_pred ec-----------------------ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEc
Q 002266 98 NI-----------------------TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFD 154 (945)
Q Consensus 98 ~l-----------------------~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafs 154 (945)
.+ ..|...+..+-...++.+|++++.|..|.+|++. |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 00 0122234444455567789999999999999997 88888888777778889999
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCee--eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC------
Q 002266 155 PNSEYLASIDSIGTVIYWELQSGRE--LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA------ 226 (945)
Q Consensus 155 pdg~~Las~s~Dg~I~iwDl~t~~~--i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~------ 226 (945)
|+|+++++++-.-.|++|.+--++. .+.... .....+|.+.|..++|+++...+++.+.||.+++||++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r-vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR-VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhh-hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999998743211 111111 1234467889999999999999999999999999997631
Q ss_pred -cEEEeecC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCC
Q 002266 227 -EKLFSLRG---DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMG 300 (945)
Q Consensus 227 -~~~~~~~~---~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG 300 (945)
+.+..... ...+....+.+||+|..||.+. ...|.+|..++++.... ..|...|.+++|+++|+++++++ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 11222110 1223344899999999998876 46799999999887766 45789999999999999999986 45
Q ss_pred eEEEEec
Q 002266 301 KYGVWES 307 (945)
Q Consensus 301 ~I~iWd~ 307 (945)
.++++..
T Consensus 395 ~vrv~~n 401 (420)
T KOG2096|consen 395 YVRVIRN 401 (420)
T ss_pred eeeeecC
Confidence 5776653
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=5.7e-19 Score=191.08 Aligned_cols=264 Identities=15% Similarity=0.291 Sum_probs=208.2
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPS-NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
.|.+++|+.....++...+.|..|++|.-.... .++.+-......-.|++......++++|+..+.|+|||+....+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 399999987776555545578899999633221 1222222222344566666666899999999999999999777778
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC-CCCEEEEEEccCCC-EEEEEeCCCcEEEEEcc
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH-KGPVTGLAFDPNSE-YLASIDSIGTVIYWELQ 175 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h-~~~V~~lafspdg~-~Las~s~Dg~I~iwDl~ 175 (945)
.+..|...|+++.++....+||+++..|.|.|..+.++.....+... ...|+-+.|+|..+ +|.+++.+|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 88999999999999999999999999999999999988877777644 34566899999776 45678999999999998
Q ss_pred CCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEE
Q 002266 176 SGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMAT 254 (945)
Q Consensus 176 t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Las 254 (945)
...+++.+.. .|..+...+||+| +..+|++.+.|..|.+||.+.......+. ...+.+.++|+++|.+|++
T Consensus 196 g~sp~~~~~~------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 196 GMSPIFHASE------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred CCCcccchhh------hccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEe
Confidence 8777665543 4667778899999 55677888999999999999776666554 3468999999999999999
Q ss_pred EECCCeEEEEECCCCe-eeee-ccCCCCeeEEEEecCC
Q 002266 255 SSLDRQILIWDVGKKL-DIDR-QKFDDRICCMAWKPIG 290 (945)
Q Consensus 255 gs~Dg~I~IWD~~~~~-~i~~-~~~~~~V~~la~spdg 290 (945)
|+..|.|..||++..+ ++.. ..|...|++++|-|..
T Consensus 268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999997643 3333 5678889999998875
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.4e-19 Score=188.33 Aligned_cols=277 Identities=17% Similarity=0.254 Sum_probs=204.8
Q ss_pred EEECCCCCEEEEEEcCCC----eEEEEcCCCCccccccccccc----cceEEEEEec-------CCCEEEEEEcCCcEEE
Q 002266 23 ILWDQQAHHLVTASSSET----TISIHDPLLPSNLPKILRHHR----DGVTALALSP-------NSTCLASGSIDHSVKL 87 (945)
Q Consensus 23 vafspdg~~L~t~g~~dg----~V~IWd~~~~~~~~~~l~~h~----~~V~~la~sp-------dg~~Lasgs~Dg~V~i 87 (945)
+..-|+...|+++-..+. .|+||+-.. ...+..|. ....|++|.. .|+++|.|+.|..|.|
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e----~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEE----ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCC----cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 345666777776643332 345565322 22333332 2345777753 3689999999999999
Q ss_pred EEcCCCee---e------------------eecccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCeEEEEEecCC
Q 002266 88 YKFPGGEF---Q------------------TNITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDGSIARVLKGHK 145 (945)
Q Consensus 88 wdl~~g~~---~------------------~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~ 145 (945)
||+.-... . ....+|+..|..++|+.. .+.||+||.|.+|++||+.++++..++..|.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 99742110 0 012256777888888874 4678999999999999999999999999999
Q ss_pred CCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeee-eeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEE
Q 002266 146 GPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGREL-HNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 146 ~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~i-~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD 222 (945)
+.|.++.|+| ...+|++|+.|++|.+.|.+..... ..++ -.+.|-.++|.| ....+++++.||.|+-+|
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--------eccceEEEEecCCCceeEEEecCCceEEeee
Confidence 9999999999 5678999999999999999852211 1111 135678899999 566788888999999999
Q ss_pred CCCC-cEEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeeeeccC---CCCeeEEEEecCCC-EEEEE
Q 002266 223 RDTA-EKLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKKLDIDRQKF---DDRICCMAWKPIGN-ALAVI 296 (945)
Q Consensus 223 ~~t~-~~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~~~i~~~~~---~~~V~~la~spdg~-~Las~ 296 (945)
++.. ++++++.. |..+|.++++++. ..+|++++.|+.|++|++.....-....| -+...|+++.|+-. .|++|
T Consensus 359 ~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 359 IRNPGKPVWTLKA-HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred cCCCCCceeEEEe-ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEec
Confidence 9976 78888887 9999999999884 56789999999999999865444333222 24477888888765 68888
Q ss_pred EcCCeEEEEecCCCCC
Q 002266 297 DVMGKYGVWESVVPSS 312 (945)
Q Consensus 297 s~DG~I~iWd~~~~~~ 312 (945)
+..+.++|||+.....
T Consensus 438 G~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTNSP 453 (463)
T ss_pred CccceEEEeecccChh
Confidence 8889999999986553
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=5.3e-19 Score=191.33 Aligned_cols=264 Identities=17% Similarity=0.252 Sum_probs=206.9
Q ss_pred CCeEEEEcCCCCccccccccc-cccceEEEEEecCCCEEEEE--EcCCcEEEEEcCCCe---eeeecccCCCCEEEEEEe
Q 002266 39 ETTISIHDPLLPSNLPKILRH-HRDGVTALALSPNSTCLASG--SIDHSVKLYKFPGGE---FQTNITRFTLPIRVLAFN 112 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~~~l~~-h~~~V~~la~spdg~~Lasg--s~Dg~V~iwdl~~g~---~~~~l~~~~~~V~~l~fs 112 (945)
...++|||..........+.. ....+.++.|..... |+++ +.|..|++|.- .|+ ....-......-.|++..
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecc-cCCCCccceeeccccchHHHHhhh
Confidence 347999998655432322211 123489999988654 5544 45778888863 333 111111111233455555
Q ss_pred cCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCC
Q 002266 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGS 192 (945)
Q Consensus 113 pdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~ 192 (945)
....++++|+..+.|+|||++...+.+.+++|+..|+++.|+-...|||+++..|.|.|..+.++.....+.. .
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~------~ 162 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI------D 162 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec------C
Confidence 5568999999999999999998778888999999999999999999999999999999999988876555542 1
Q ss_pred CCCCceEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe
Q 002266 193 DPSSMNVLSWSPDGET-LAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP-NGKYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 193 ~~~~i~~l~~spdg~~-La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp-dg~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
....+.-+.|+|..++ |.+++.+|.|.+||+....+++.+...|..+...+||+| +..+|++.+.|..|.+||+....
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 2344667999996654 566788999999999998898888777999999999999 56788999999999999999988
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 271 DIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 271 ~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
.........+...++|+++|.+|+.|+..|.|..||+...
T Consensus 243 s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 8888888889999999999999999999999999998643
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=192.28 Aligned_cols=275 Identities=20% Similarity=0.270 Sum_probs=214.3
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~ 98 (945)
.|..++|-|||..|+.+. +..+.|||+..+ ....++++|.+.|+|++|+.||+.+++|+.|..|.+|.-.-.. +.
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL- 88 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee-
Confidence 699999999999999885 678999999877 5688999999999999999999999999999999999843221 11
Q ss_pred cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCe
Q 002266 99 ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGR 178 (945)
Q Consensus 99 l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~ 178 (945)
-..|+..|.|+.|+|-...|++++-. ..-+|......... . .....|.+.+|..||.+|+.|-.+|+|.|-+- +++
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gE 164 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGE 164 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCC
Confidence 13588999999999998999988754 35678775544322 1 12367889999999999999999999998753 333
Q ss_pred eeeeecccCCCCCCCCCCceEEEEcCCC-----CEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 179 ELHNLKRVAPDIGSDPSSMNVLSWSPDG-----ETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 179 ~i~~~~~~~~~~~~~~~~i~~l~~spdg-----~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
....+.. .++..++|.+++|+|.. ..+++.....++.+|.+. |+.+..-.. ..-...++++.++|.|+.
T Consensus 165 ek~~I~R----pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 165 EKVKIER----PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA-LNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred cceEEeC----CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc-CCCCchhheeccCCcEEE
Confidence 3333332 23567889999999952 467777777778888775 444432222 334567889999999999
Q ss_pred EEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 254 TSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
.|+.|+.+.+|-- .|..+.+ -.....|+.++.+|++++++.|..||+|-.|++..
T Consensus 239 iGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9999999999964 4445554 34567899999999999999999999999998864
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=6.7e-18 Score=189.88 Aligned_cols=284 Identities=23% Similarity=0.371 Sum_probs=222.0
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc--cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC-
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPS--NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG- 93 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g- 93 (945)
......+.|+|++..+++-| ..|..++|...... .....+.+|.+.|++++|+|.|.+|++.+.|.+-+++---..
T Consensus 316 a~GF~g~lw~~n~~~ii~~g-~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHG-RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred ccceeeEEEcCCCCEEEEec-ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 45688999999999888876 89999999833321 234467899999999999999999999999999999864311
Q ss_pred ---eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC------------------------------------
Q 002266 94 ---EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID------------------------------------ 134 (945)
Q Consensus 94 ---~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~------------------------------------ 134 (945)
-.+..-+-|...++|++|-+....+++|.+...+++|+...
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 12333445777899999998667888888888888887520
Q ss_pred -------CeE---------------------------------EEEEecCCCCEEEEEEccCCCEEEEEeCCC-----cE
Q 002266 135 -------GSI---------------------------------ARVLKGHKGPVTGLAFDPNSEYLASIDSIG-----TV 169 (945)
Q Consensus 135 -------~~~---------------------------------~~~l~~h~~~V~~lafspdg~~Las~s~Dg-----~I 169 (945)
|.. +..+-+|...|.+++.+|+++++|+++... .|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 000 001235888999999999999999998643 59
Q ss_pred EEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---EeecCCCCCCeEEEEEc
Q 002266 170 IYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKL---FSLRGDHVQPICFLSWS 246 (945)
Q Consensus 170 ~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~---~~~~~~h~~~I~~l~fS 246 (945)
++|+..+-..+..+. .|.-.|+.++|+|||++|++.+.|.++.+|........ +.....|..-|.++.|+
T Consensus 555 ~lw~t~~W~~~~~L~-------~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 555 RLWNTANWLQVQELE-------GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred EEEeccchhhhheec-------ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence 999987766655544 56678999999999999999999999999987543221 11123488899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCC--eeeee---ccCCCCeeEEEEecC-----CCEEEEEEcCCeEEEEecC
Q 002266 247 PNGKYMATSSLDRQILIWDVGKK--LDIDR---QKFDDRICCMAWKPI-----GNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 247 pdg~~Lasgs~Dg~I~IWD~~~~--~~i~~---~~~~~~V~~la~spd-----g~~Las~s~DG~I~iWd~~ 308 (945)
|++.++||+|.|..|+||..... +.+.. ..+...|+.++|.|- +..+++|-..|.|.+|...
T Consensus 628 pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 628 PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999999999999999998776 33333 567889999999883 2368889999999999854
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=181.67 Aligned_cols=241 Identities=22% Similarity=0.328 Sum_probs=184.3
Q ss_pred ccccceEEEEEecCC--CEEEEEEcCCcEEEEEcCC----------------CeeeeecccCCCCEEEEEEecC-CCEEE
Q 002266 59 HHRDGVTALALSPNS--TCLASGSIDHSVKLYKFPG----------------GEFQTNITRFTLPIRVLAFNKS-GSMLA 119 (945)
Q Consensus 59 ~h~~~V~~la~spdg--~~Lasgs~Dg~V~iwdl~~----------------g~~~~~l~~~~~~V~~l~fspd-g~~La 119 (945)
.|.+.+..+.-++-+ .+.++-+..|.|+||++.. .+.+.++.+|...-..++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 466777777777644 5666667889999999742 1345566778888899999993 23478
Q ss_pred EEECCCcEEEEEcCCCeEE---EEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCC
Q 002266 120 AAGDDEGIKLINTIDGSIA---RVLKGHKGPVTGLAFDPNS-EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPS 195 (945)
Q Consensus 120 sgs~Dg~I~iwd~~~~~~~---~~l~~h~~~V~~lafspdg-~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~ 195 (945)
+|..-+.|++|...++.-. ..+.+|...|-.++|+|.. ..|++|+.||+|+|||++.+.....+.. ..|.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-----kAh~s 303 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-----KAHNS 303 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-----eccCC
Confidence 8888889999999886532 3466799999999999954 5889999999999999999843322221 25677
Q ss_pred CceEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe-
Q 002266 196 SMNVLSWSPDGETLAVPGLKNDVVMYDRDT---AEKLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKKL- 270 (945)
Q Consensus 196 ~i~~l~~spdg~~La~gs~dg~I~vwD~~t---~~~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~~- 270 (945)
.|+.+.|+..-.+||+|+.+|+++|||+++ ++++..|.. |..+|+++.|+|. ...|++++.|.+|.|||+.-..
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 899999999878999999999999999986 456778876 9999999999994 5678888899999999984321
Q ss_pred ------------------eeeeccCCCCeeEEEEecCCC-EEEEEEcCCeEEEEe
Q 002266 271 ------------------DIDRQKFDDRICCMAWKPIGN-ALAVIDVMGKYGVWE 306 (945)
Q Consensus 271 ------------------~i~~~~~~~~V~~la~spdg~-~Las~s~DG~I~iWd 306 (945)
++........+..+.|++.-. +|++.+.|| +.||.
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 111222245688899999754 788888888 45553
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=180.14 Aligned_cols=242 Identities=15% Similarity=0.278 Sum_probs=182.0
Q ss_pred CCCCCEEEEEECCCCC-EEEEEEcCCCeEEEEcCCCC---------------ccccccccccccceEEEEEecC-CCEEE
Q 002266 15 GNAASFCSILWDQQAH-HLVTASSSETTISIHDPLLP---------------SNLPKILRHHRDGVTALALSPN-STCLA 77 (945)
Q Consensus 15 gh~~~V~svafspdg~-~L~t~g~~dg~V~IWd~~~~---------------~~~~~~l~~h~~~V~~la~spd-g~~La 77 (945)
+|.+.|+.+.-++-|+ .++++-+..|.|.||++... .....++.+|...=++|+|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 5667788887787754 44445568999999995321 1233456788888899999992 23577
Q ss_pred EEEcCCcEEEEEcCCCeee---eecccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCC---eEEEEEecCCCCEEE
Q 002266 78 SGSIDHSVKLYKFPGGEFQ---TNITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDG---SIARVLKGHKGPVTG 150 (945)
Q Consensus 78 sgs~Dg~V~iwdl~~g~~~---~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~---~~~~~l~~h~~~V~~ 150 (945)
+|.--+.|++|...+|.-. ..+.+|+..|-.++|||. ...|++|+.||+|+|||++.+ ..+. .+.|.+.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceee
Confidence 8777788999998876532 346679999999999994 568999999999999999987 3333 3789999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCe---eeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 002266 151 LAFDPNSEYLASIDSIGTVIYWELQSGR---ELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTA 226 (945)
Q Consensus 151 lafspdg~~Las~s~Dg~I~iwDl~t~~---~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~ 226 (945)
|.|+..-.+||+|+.||+++|||+++-+ ++..+ ..|..+|+++.|+| +...|++++.|..|.+||+..-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-------k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-------KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-------EeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999988899999999999999998753 33333 36778999999999 5678888899999999998532
Q ss_pred cE-----------------EEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q 002266 227 EK-----------------LFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWD 265 (945)
Q Consensus 227 ~~-----------------~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD 265 (945)
.- ...|.......+..+.|++. ..+|++.+.|| +.||.
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11 01111112356788999984 45788888888 55553
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=7.3e-18 Score=174.66 Aligned_cols=269 Identities=19% Similarity=0.317 Sum_probs=202.0
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-----ccccccc-------ccccceEEEEEe-------cCCCEEEEEE
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPS-----NLPKILR-------HHRDGVTALALS-------PNSTCLASGS 80 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-----~~~~~l~-------~h~~~V~~la~s-------pdg~~Lasgs 80 (945)
.-.+.|+|||..|++.+ .|..+.+|++.... .....+. .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~s-edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLS-EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeec-ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 44678999999999986 89999999864221 0011111 123567788886 5678999999
Q ss_pred cCCcEEEEEcCCCeeeeecccCC-----CCEEEEEEecCCCEEEEEECCCcEEEEEc-CCCeEE--EEE-----ecCCCC
Q 002266 81 IDHSVKLYKFPGGEFQTNITRFT-----LPIRVLAFNKSGSMLAAAGDDEGIKLINT-IDGSIA--RVL-----KGHKGP 147 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~~~~~l~~~~-----~~V~~l~fspdg~~Lasgs~Dg~I~iwd~-~~~~~~--~~l-----~~h~~~ 147 (945)
.+.-|.+||.-+|+....+.... ....+++|+|||.+|++| ....|+++|+ +.|... ... .+..+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999998776665422 245789999999998876 5678999999 445321 111 233678
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 002266 148 VTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDT 225 (945)
Q Consensus 148 V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t 225 (945)
|.+++|+| +...+++++....+-||.-..+.++..+- .|.+.|+.++|+++|+.|++|.. +..|..||++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-------ccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 99999999 45589999998888888877777666553 56788999999999999999876 67899999986
Q ss_pred Cc-EEEeecCCCCC-CeEE--EEEcCCCCEEEEEECCCeEEEEECCC-Ceeeee-ccCCCCeeEEEEecCCCEEEEEEc
Q 002266 226 AE-KLFSLRGDHVQ-PICF--LSWSPNGKYMATSSLDRQILIWDVGK-KLDIDR-QKFDDRICCMAWKPIGNALAVIDV 298 (945)
Q Consensus 226 ~~-~~~~~~~~h~~-~I~~--l~fSpdg~~Lasgs~Dg~I~IWD~~~-~~~i~~-~~~~~~V~~la~spdg~~Las~s~ 298 (945)
.. ++..+.. |.. .-.. ....|+|++|++|+.||.|++||+++ +..+.. ..+...+..++++|--..+|+++.
T Consensus 283 ~~~pv~~L~r-hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 283 SRDPVYALER-HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccchhhhhhh-hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 54 5555554 433 2233 44568999999999999999999988 553443 557789999999999777777754
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2.3e-17 Score=171.07 Aligned_cols=246 Identities=22% Similarity=0.348 Sum_probs=186.2
Q ss_pred eEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee------------eec-ccCCCCEEEEEEe-------cCCCEEEEEEC
Q 002266 64 VTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ------------TNI-TRFTLPIRVLAFN-------KSGSMLAAAGD 123 (945)
Q Consensus 64 V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~------------~~l-~~~~~~V~~l~fs-------pdg~~Lasgs~ 123 (945)
...+.|+|||..|++-+.|..+.+|+++..... ..+ ......|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999998532100 011 1234567777775 67789999999
Q ss_pred CCcEEEEEcCCCeEEEEEec--CCC---CEEEEEEccCCCEEEEEeCCCcEEEEEc-cCCeeeeeecccCCCCCCCCCCc
Q 002266 124 DEGIKLINTIDGSIARVLKG--HKG---PVTGLAFDPNSEYLASIDSIGTVIYWEL-QSGRELHNLKRVAPDIGSDPSSM 197 (945)
Q Consensus 124 Dg~I~iwd~~~~~~~~~l~~--h~~---~V~~lafspdg~~Las~s~Dg~I~iwDl-~t~~~i~~~~~~~~~~~~~~~~i 197 (945)
+.-|++||.-+|+....+++ |.. ...+++|+|||.+|++|. ..+|++||+ +.|..............+..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999987776653 333 346899999999999765 689999999 55644333332222222445778
Q ss_pred eEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCee-eee
Q 002266 198 NVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL-DRQILIWDVGKKLD-IDR 274 (945)
Q Consensus 198 ~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~-Dg~I~IWD~~~~~~-i~~ 274 (945)
.+++|+| +.+.+++|+....+-||.-....++..+.+ |.+.|+.++|.++|+.|.+|+. |-.|..||++.... +..
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 8999999 667999999999999999888888888776 9999999999999999999875 67899999976433 222
Q ss_pred -ccCCC-Cee--EEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 275 -QKFDD-RIC--CMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 275 -~~~~~-~V~--~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
..|.. .-. -+...|+++.|++|+.||.|++||+..+.
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 23322 222 34457889999999999999999987744
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=4e-16 Score=176.20 Aligned_cols=287 Identities=29% Similarity=0.470 Sum_probs=228.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccc-cceEEEEE-ecCCC-EEEEEEc-CCcEEEEEc
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHR-DGVTALAL-SPNST-CLASGSI-DHSVKLYKF 90 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~-~~V~~la~-spdg~-~Lasgs~-Dg~V~iwdl 90 (945)
+|...|.++.|.+.+..++.++ .++.+.+|+..........+..+. ..+..+.+ ++++. .++..+. |+.+.+|+.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGS-SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eccceEEEEEECCCCcEEEEec-CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 5668999999999999999886 899999999877642344444433 36777777 78777 5555444 899999999
Q ss_pred CC-CeeeeecccCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC-EEEEEeCCC
Q 002266 91 PG-GEFQTNITRFTLPIRVLAFNKSGSMLAAAGD-DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE-YLASIDSIG 167 (945)
Q Consensus 91 ~~-g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~-~Las~s~Dg 167 (945)
.. ......+..|...|..++|+|++..+++++. ++.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 87 7778888889999999999999998888885 99999999999888889999999999999999998 555558999
Q ss_pred cEEEEEccCCeeee-eecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEeecCCCCCCeEEEEE
Q 002266 168 TVIYWELQSGRELH-NLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEK-LFSLRGDHVQPICFLSW 245 (945)
Q Consensus 168 ~I~iwDl~t~~~i~-~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~-~~~~~~~h~~~I~~l~f 245 (945)
.|++||...+..+. .+. .+.... ...|+|++.++++++.++.+++|+...... +..+ ..|...+.++.|
T Consensus 222 ~i~~wd~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 292 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLS-------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAF 292 (466)
T ss_pred cEEEEECCCCcEEeeecC-------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEE
Confidence 99999888666655 232 222322 228999998899999999999999987665 4444 347889999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeeeec---cCCCCeeEEEEecCCCEEEEE-EcCCeEEEEecCCCC
Q 002266 246 SPNGKYMATSSLDRQILIWDVGKKLDIDRQ---KFDDRICCMAWKPIGNALAVI-DVMGKYGVWESVVPS 311 (945)
Q Consensus 246 Spdg~~Lasgs~Dg~I~IWD~~~~~~i~~~---~~~~~V~~la~spdg~~Las~-s~DG~I~iWd~~~~~ 311 (945)
+|++..+++++.|+.+.+|+..+....... .|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999888888998999999999887766553 455679999993332456655 678899999887544
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.4e-19 Score=208.61 Aligned_cols=284 Identities=20% Similarity=0.335 Sum_probs=212.9
Q ss_pred EEEECCCCC-EEEEEE---------cCCCeEEEEcCCCCccc--ccccc--ccccceEEEEEecCCCE----EEEEEcCC
Q 002266 22 SILWDQQAH-HLVTAS---------SSETTISIHDPLLPSNL--PKILR--HHRDGVTALALSPNSTC----LASGSIDH 83 (945)
Q Consensus 22 svafspdg~-~L~t~g---------~~dg~V~IWd~~~~~~~--~~~l~--~h~~~V~~la~spdg~~----Lasgs~Dg 83 (945)
.++|+|.+. +++++. +.+.++-||.+...... ..... .-....+.|+|.+.|.. |+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 356999997 444431 23455666654322111 11111 12456789999997765 88889999
Q ss_pred cEEEEEcCC---C---eeeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEE--ecCCCCEEEEEEc
Q 002266 84 SVKLYKFPG---G---EFQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVL--KGHKGPVTGLAFD 154 (945)
Q Consensus 84 ~V~iwdl~~---g---~~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l--~~h~~~V~~lafs 154 (945)
.|.+|+... + ..+.....|+++|+.+.|++.. ++||+|+++|.|.|||+...+.-..+ ....+.|.+++|+
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN 170 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence 999999754 2 2345667899999999999965 59999999999999999875433333 1245789999999
Q ss_pred cCC-CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC-CEEEEEeCCC---eEEEEECCCCc-E
Q 002266 155 PNS-EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG-ETLAVPGLKN---DVVMYDRDTAE-K 228 (945)
Q Consensus 155 pdg-~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg-~~La~gs~dg---~I~vwD~~t~~-~ 228 (945)
..- ..|++++.+|.+.|||++..+.+..+.... ....+..++|||+. ..|++++.|. .|.+||++... +
T Consensus 171 rkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 171 RKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred hhhhHHhhccCCCCCceeccccCCCcccccccCC-----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 754 467888999999999999887766654332 12446789999965 5566666543 69999988654 4
Q ss_pred EEeecCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeeeeccC-CCCeeEEEEecCCC-EEEEEEcCCeEEEE
Q 002266 229 LFSLRGDHVQPICFLSWSPNG-KYMATSSLDRQILIWDVGKKLDIDRQKF-DDRICCMAWKPIGN-ALAVIDVMGKYGVW 305 (945)
Q Consensus 229 ~~~~~~~h~~~I~~l~fSpdg-~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~~~V~~la~spdg~-~Las~s~DG~I~iW 305 (945)
+..+.+ |...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+.. ...+..+.|+|... .+++++.||.|.|+
T Consensus 246 ~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 555555 99999999999955 8999999999999999999999988654 56789999999776 78889999999999
Q ss_pred ecCCCC
Q 002266 306 ESVVPS 311 (945)
Q Consensus 306 d~~~~~ 311 (945)
.+....
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987655
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=3.2e-18 Score=189.39 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=103.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc----cccc-ccccccceEEEEEecCCCEEEEEEcCCcEEEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN----LPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLYK 89 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~----~~~~-l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwd 89 (945)
+|...|+.+.|+|-...|+++|+.|..|+||.+..+.. .+.. +.+..-.|-++.|+|...-|+..+..|.|+|||
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D 156 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITD 156 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEE
Confidence 56699999999997776666667999999999863321 1112 233345688999999665555556679999999
Q ss_pred cCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CeEEEEEecCC
Q 002266 90 FPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID-GSIARVLKGHK 145 (945)
Q Consensus 90 l~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~~~l~~h~ 145 (945)
+.+++....+..|...|.+..|+.||.+|++++.|..|+|||.+. ++.++...+|.
T Consensus 157 ~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 157 ISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred cccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence 999999999999999999999999999999999999999999875 44555555553
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=4.3e-17 Score=169.54 Aligned_cols=289 Identities=16% Similarity=0.279 Sum_probs=215.5
Q ss_pred CCCCCEEEEEECC----CC-CEEEEEEcCCCeEEEEcCCCCc--cccccc-c-ccccceEEEEEecC----CCEEEEEEc
Q 002266 15 GNAASFCSILWDQ----QA-HHLVTASSSETTISIHDPLLPS--NLPKIL-R-HHRDGVTALALSPN----STCLASGSI 81 (945)
Q Consensus 15 gh~~~V~svafsp----dg-~~L~t~g~~dg~V~IWd~~~~~--~~~~~l-~-~h~~~V~~la~spd----g~~Lasgs~ 81 (945)
+|..+|..++|++ +. ..++++| ...+.+|...... ...+.. . .|......++|+-+ ..+||+|+.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG--GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC--CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 5668899999984 22 3344554 5678888765443 222222 1 36777888999864 348888999
Q ss_pred CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEE---ecCCCCEEEEEEccCC
Q 002266 82 DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVL---KGHKGPVTGLAFDPNS 157 (945)
Q Consensus 82 Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l---~~h~~~V~~lafspdg 157 (945)
-|.|+|.|+.++++...+.+|...|..|.+.|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.|+++|
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 9999999999999999999999999999999964 68999999999999999999988876 5799999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeeeeeec------------------ccCCC---CCCCCCCceEEEEcCCCCEEEEEeCCC
Q 002266 158 EYLASIDSIGTVIYWELQSGRELHNLK------------------RVAPD---IGSDPSSMNVLSWSPDGETLAVPGLKN 216 (945)
Q Consensus 158 ~~Las~s~Dg~I~iwDl~t~~~i~~~~------------------~~~~~---~~~~~~~i~~l~~spdg~~La~gs~dg 216 (945)
.++++++.|..|++|++...+....++ .+.+. ...|...|.|+.|- |.++++-+-++
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen 271 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN 271 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence 999999999999999998432111111 11111 11233445555554 67888888899
Q ss_pred eEEEEECCC-CcE-------------EEeecCCCCCCeEEE--EEcCCCCEEEEEECCCeEEEEECCCCeeeee-----c
Q 002266 217 DVVMYDRDT-AEK-------------LFSLRGDHVQPICFL--SWSPNGKYMATSSLDRQILIWDVGKKLDIDR-----Q 275 (945)
Q Consensus 217 ~I~vwD~~t-~~~-------------~~~~~~~h~~~I~~l--~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-----~ 275 (945)
.|..|.... .+. +.++.- ....|.-+ +|.|-++.||.|...|.|++||++....... .
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999998721 111 122221 23445555 4566789999999999999999987665322 2
Q ss_pred cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 276 KFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 276 ~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
.....|...+|+.+|..|+....||.|.-||-.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 235679999999999999999999999999864
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=8.5e-18 Score=187.51 Aligned_cols=254 Identities=21% Similarity=0.252 Sum_probs=184.1
Q ss_pred ccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccc--cccccccceEEEEEec-CCCEEEEEEc
Q 002266 5 SVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPK--ILRHHRDGVTALALSP-NSTCLASGSI 81 (945)
Q Consensus 5 ~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~--~l~~h~~~V~~la~sp-dg~~Lasgs~ 81 (945)
+++...+|. +.|..+.|-|....|++++ .|.++++||+.... +.. .+.+|...|.+++|.| +...|++|+.
T Consensus 92 ~lk~~~aH~----nAifDl~wapge~~lVsas-GDsT~r~Wdvk~s~-l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 92 QLKKPLAHK----NAIFDLKWAPGESLLVSAS-GDSTIRPWDVKTSR-LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred hhccccccc----ceeEeeccCCCceeEEEcc-CCceeeeeeeccce-eecceeecccccccchhhhccCCCcceeeccC
Confidence 455566666 9999999999555566664 89999999998764 333 4789999999999999 4578899999
Q ss_pred CCcEEEEEcCCCee---------------------------eeecccCCCCEEE---EEEecCCCEEEEEEC-CCcEEEE
Q 002266 82 DHSVKLYKFPGGEF---------------------------QTNITRFTLPIRV---LAFNKSGSMLAAAGD-DEGIKLI 130 (945)
Q Consensus 82 Dg~V~iwdl~~g~~---------------------------~~~l~~~~~~V~~---l~fspdg~~Lasgs~-Dg~I~iw 130 (945)
||.|.|||++-... +..-..+...|.. +.+..|...||+++. |+.|+||
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW 245 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence 99999999853210 0001112233444 556678889999887 9999999
Q ss_pred EcCCCeEEEE--------EecC---CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCee--eeeecccCCCCCCCCCCc
Q 002266 131 NTIDGSIARV--------LKGH---KGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRE--LHNLKRVAPDIGSDPSSM 197 (945)
Q Consensus 131 d~~~~~~~~~--------l~~h---~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~--i~~~~~~~~~~~~~~~~i 197 (945)
|++....... +..| .-.+.++..+..|.+|++.+.|+.|++|++.+... +..+.... .....
T Consensus 246 DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-----~~sf~ 320 (720)
T KOG0321|consen 246 DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-----NSSFY 320 (720)
T ss_pred eecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc-----cceee
Confidence 9987543222 2223 34578888888999999999999999999976432 22221111 01112
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC
Q 002266 198 NVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 198 ~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~ 269 (945)
..-..+|++.++++|+.|...++|.+.+.+....+..+|...|++++|.|. -.-+++++.|..++||++..+
T Consensus 321 vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 321 VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 234568999999999999999999999876544444449999999999984 234777799999999999654
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.1e-18 Score=202.86 Aligned_cols=246 Identities=21% Similarity=0.317 Sum_probs=197.4
Q ss_pred CCCEEEEEECCCCCE---EEEEEcCCCeEEEEcCCCC---c--cccccccccccceEEEEEecCC-CEEEEEEcCCcEEE
Q 002266 17 AASFCSILWDQQAHH---LVTASSSETTISIHDPLLP---S--NLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVKL 87 (945)
Q Consensus 17 ~~~V~svafspdg~~---L~t~g~~dg~V~IWd~~~~---~--~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~i 87 (945)
..+.+.++|.+.|.. |++||..||.|.+||...- . ........|.+.|..+.|++.. ++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 467899999999887 5677779999999997541 1 3445667899999999999955 59999999999999
Q ss_pred EEcCCCeeeeecc--cCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCC--CEEEEEEccCCC-EEE
Q 002266 88 YKFPGGEFQTNIT--RFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKG--PVTGLAFDPNSE-YLA 161 (945)
Q Consensus 88 wdl~~g~~~~~l~--~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~--~V~~lafspdg~-~La 161 (945)
||+..-+...... .....|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..|.+ .+..++|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755443332 2456899999997 456788899999999999999887777765544 478999999764 566
Q ss_pred EEeCCC---cEEEEEccCCe-eeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEeecCCC
Q 002266 162 SIDSIG---TVIYWELQSGR-ELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236 (945)
Q Consensus 162 s~s~Dg---~I~iwDl~t~~-~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs~dg~I~vwD~~t~~~~~~~~~~h 236 (945)
+++.|. .|.+||+|... .++.+ ..|...|.++.|++. ..+|++++.|+.|.+|+..+++.+..+.. .
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~-------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~ 295 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKIL-------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q 295 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhh-------cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C
Confidence 665543 69999998643 22222 356788999999995 58999999999999999999999999987 6
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCe
Q 002266 237 VQPICFLSWSPNG-KYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 237 ~~~I~~l~fSpdg-~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
...+..+.|+|.. ..+++++.||.|.|+.+....
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7889999999954 488899999999999986644
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=180.10 Aligned_cols=239 Identities=16% Similarity=0.250 Sum_probs=194.7
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC--eeeeecccCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCeE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGG--EFQTNITRFTLPIRVLAFNKSGS-MLAAAGDDEGIKLINTIDGSI 137 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g--~~~~~l~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~ 137 (945)
.++|+++.|+|....|++|+.|+.++||.+... ..+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999998543 23444555577999999999999 888899899999999988764
Q ss_pred EE--EEecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 138 AR--VLKGHK-GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 138 ~~--~l~~h~-~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
.. .+.++. ..+.....+|++++|+..+..|.|.+....++..+.+++. .+.+..++|+.+|+.|++++.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--------ccEEeeEEEecCCcEEEEEcC
Confidence 33 233333 4577888999999999999999999999999988887754 366888999999999999999
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------Ceeeee-ccCCCCeeEEEEe
Q 002266 215 KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK------KLDIDR-QKFDDRICCMAWK 287 (945)
Q Consensus 215 dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~------~~~i~~-~~~~~~V~~la~s 287 (945)
+|.|++||++...++..+.....-.-+++|.|++|.|||+|+..|.|.|||..+ .+++.. ......|++|.|+
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 999999999999998888753333456788889999999999999999999754 233333 3346789999999
Q ss_pred cCCCEEEEEEc--CCeEEEEec
Q 002266 288 PIGNALAVIDV--MGKYGVWES 307 (945)
Q Consensus 288 pdg~~Las~s~--DG~I~iWd~ 307 (945)
++++.||.++. +..+++-.+
T Consensus 445 ~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred cchhhhhhhhhccccceEEEec
Confidence 99999888764 455666544
No 160
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=3.6e-17 Score=167.46 Aligned_cols=253 Identities=20% Similarity=0.335 Sum_probs=195.8
Q ss_pred cccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec---CCCEEEEEEcCCc
Q 002266 8 LREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP---NSTCLASGSIDHS 84 (945)
Q Consensus 8 ~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp---dg~~Lasgs~Dg~ 84 (945)
+...|.-+|.=.|.++.|-|-..-++++++.|.+++|||..+.. ....+. ..+.|++-+|+| ...++|+|..+-.
T Consensus 92 v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ-~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 92 VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ-EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce-eeEEee-cCceeehhhcChhhhcceEEEEecCCCc
Confidence 45566668889999999999888888888899999999987763 333333 357888889998 2356777888899
Q ss_pred EEEEEcCCCeeeeecccCCCCEEEEEEecCCCE-EEEEECCCcEEEEEcCCC-eEEEEE--------------ecCCCCE
Q 002266 85 VKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM-LAAAGDDEGIKLINTIDG-SIARVL--------------KGHKGPV 148 (945)
Q Consensus 85 V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~-Lasgs~Dg~I~iwd~~~~-~~~~~l--------------~~h~~~V 148 (945)
|++.|+.+|.+...+.+|...|.++.|+|...+ |++|+.||.|++||++.- .+...+ ..|.+.|
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 999999999999999999999999999997765 678899999999999864 233333 3577889
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCCeeee-eecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 002266 149 TGLAFDPNSEYLASIDSIGTVIYWELQSGRELH-NLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE 227 (945)
Q Consensus 149 ~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~-~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~ 227 (945)
.+++|..++.++++++.|..+++|+..+|.... .+.........+ -.+. +.-...+.++... .++.+.++.+-.+.
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~-~~~~-~~~~~s~vfv~~p-~~~~lall~~~sgs 326 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTS-FAVH-IQSMDSDVFVLFP-NDGSLALLNLLEGS 326 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCccccccccccccccccc-ceEE-EeecccceEEEEe-cCCeEEEEEccCce
Confidence 999999999999999999999999998885422 221111100011 1111 2211123344444 35899999999999
Q ss_pred EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002266 228 KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 228 ~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~ 266 (945)
.+..+.. |...|.+..+-|+-..+.+|..|+.|..|-.
T Consensus 327 ~ir~l~~-h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 327 FVRRLST-HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEeeec-ccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999987 7889999999999889999999999999976
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=4.9e-17 Score=180.02 Aligned_cols=245 Identities=20% Similarity=0.298 Sum_probs=193.2
Q ss_pred ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC--EEEEEECCCcEEEE
Q 002266 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS--MLAAAGDDEGIKLI 130 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~--~Lasgs~Dg~I~iw 130 (945)
+...+.+|++.|++|+..|.|.+|++|+.||+|+||.+.+|.++..+. ..+.|.|++|+|.+. .||++-... +.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 334678999999999999999999999999999999999999998876 567999999999664 344443332 4444
Q ss_pred EcCCC-------------------------------------eEEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEE
Q 002266 131 NTIDG-------------------------------------SIARVLKGHKGPVTGLAFDPNSEYLASIDSIG---TVI 170 (945)
Q Consensus 131 d~~~~-------------------------------------~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg---~I~ 170 (945)
+..-| .-+...-.|...|..+.|+..|.||++.+.++ .|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 43211 01223345888999999999999999986643 688
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCC
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
|+++........+. ...+.+.++.|+|...+|++++ ...|+|||+.....+..+.. ....|..++.+|.|.
T Consensus 550 iHQLSK~~sQ~PF~-------kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GD 620 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFR-------KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGD 620 (733)
T ss_pred EEecccccccCchh-------hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCC
Confidence 88887654433222 2246688999999999999987 67899999998777766654 567899999999999
Q ss_pred EEEEEECCCeEEEEECCCC-eeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 251 YMATSSLDRQILIWDVGKK-LDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 251 ~Lasgs~Dg~I~IWD~~~~-~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
-|+.|+.|+.+..||+.-. ++... ..|...+++++||+.-.++++|+.||.+.|+--.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 9999999999999999765 33333 4577889999999999999999999999988643
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=168.11 Aligned_cols=291 Identities=10% Similarity=0.088 Sum_probs=213.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCC----c-ccccc-ccccccceEEEEEecCCCEEEEEEcCCcEEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLP----S-NLPKI-LRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~----~-~~~~~-l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iw 88 (945)
+|.+.|+++.|+.++++|+++| .|..++||++... . ..+.. -..|...|.|++|....++|++|..+++|.+.
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGG-DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGG-DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhccccceeeeccCCeEEeecC-CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 7889999999999999999987 9999999986421 0 11112 23466899999999999999999999999999
Q ss_pred EcCCCeeeeecccC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe-E--EEEEecCCCCEEEEEEccC-CCEEEE
Q 002266 89 KFPGGEFQTNITRF--TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS-I--ARVLKGHKGPVTGLAFDPN-SEYLAS 162 (945)
Q Consensus 89 dl~~g~~~~~l~~~--~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~--~~~l~~h~~~V~~lafspd-g~~Las 162 (945)
|+.+.+.+..+... .+.|..+..+|-.+.|++.+.++.|.+||.+... . ...+.........+.|+|. ..+|++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99998877655432 3589999999999999999999999999998754 1 1222334456788999994 567888
Q ss_pred EeCCCcEEEEEccCCee-eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEeecCCC----
Q 002266 163 IDSIGTVIYWELQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDH---- 236 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~-i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h---- 236 (945)
.+..+.+-+||++.... +..... ...+.........+.|+|+|+.|++--....-.+||+-+.. .+..+....
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~-~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSM-FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred ccccCCCCceeeccccchHHhhhc-cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcce
Confidence 88889999999986532 111111 01111112223568899999998887666667788887644 344443111
Q ss_pred -CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------------------eeeeeccCCCCeeEEEEecCCC
Q 002266 237 -VQPICFLSWSPNGKYMATSSLDRQILIWDVGKK------------------------LDIDRQKFDDRICCMAWKPIGN 291 (945)
Q Consensus 237 -~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~------------------------~~i~~~~~~~~V~~la~spdg~ 291 (945)
...+.+++|.-+ ..+++|+.+-.|+||.+... ......+|..-+..+.|+|...
T Consensus 292 N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 292 NIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 234666777655 44999999999999987321 1112245777889999999999
Q ss_pred EEEEEEcCCeEEEEecC
Q 002266 292 ALAVIDVMGKYGVWESV 308 (945)
Q Consensus 292 ~Las~s~DG~I~iWd~~ 308 (945)
+|++.+....++||...
T Consensus 371 ~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 371 LLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEeccchhhheeccccc
Confidence 99999999999999754
No 163
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.6e-16 Score=181.24 Aligned_cols=298 Identities=17% Similarity=0.255 Sum_probs=225.1
Q ss_pred ccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC---CccccccccccccceEEEEEecCCCEEEEEEcCCcE
Q 002266 9 REAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLL---PSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSV 85 (945)
Q Consensus 9 ~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~---~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V 85 (945)
+..+. .|.-.++|.++||++++++++- .||.|.+|.-.. .....+.+.-|...|.+++|+++|.+|++|+..|.+
T Consensus 198 ~~~~~-~Htf~~t~~~~spn~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 198 RDITV-HHTFNITCVALSPNERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred chhhh-hhcccceeEEeccccceEEEec-cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEE
Confidence 34444 5667799999999999999986 899999996432 224456677899999999999999999999999999
Q ss_pred EEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec-----------CCCCEEEEEEc
Q 002266 86 KLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG-----------HKGPVTGLAFD 154 (945)
Q Consensus 86 ~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~-----------h~~~V~~lafs 154 (945)
.+|.+.+++ .+.+.+..++|..+.++||+.+.++...|..|.+....+.....++.+ ..+-.+.++++
T Consensus 276 v~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 276 VLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred EEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 999999988 677888999999999999999999999999999998766544333322 24557789999
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCC----CCCCCceEEEEcCCCCEEEEEeC--------C--CeEEE
Q 002266 155 PNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIG----SDPSSMNVLSWSPDGETLAVPGL--------K--NDVVM 220 (945)
Q Consensus 155 pdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~----~~~~~i~~l~~spdg~~La~gs~--------d--g~I~v 220 (945)
|..+.++..+..|.|.+||+-+...+..+........ .....++.++.+-.|.++++.-. + ..+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 9777888889999999999988877666543221111 11234566777778998888532 2 35788
Q ss_pred EECC----CCcEEEeecCCCCCCeEEEEEcC-CC-CEEEEEECCCeEEEEECCCCeee----------ee-ccCCCCeeE
Q 002266 221 YDRD----TAEKLFSLRGDHVQPICFLSWSP-NG-KYMATSSLDRQILIWDVGKKLDI----------DR-QKFDDRICC 283 (945)
Q Consensus 221 wD~~----t~~~~~~~~~~h~~~I~~l~fSp-dg-~~Lasgs~Dg~I~IWD~~~~~~i----------~~-~~~~~~V~~ 283 (945)
|-.. ++.....+..+|...+...++.+ .. ..+++++.||.++||-+....-+ .. .-|..++++
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 8654 34444555566888777777655 22 37899999999999988332211 11 125778999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 284 MAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 284 la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
++|+.|| .|++++.++.|.+||...+
T Consensus 515 ~~fs~dG-slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 515 LCFSQDG-SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred hhhcCCC-cEEEEecCCEEEEecCCCh
Confidence 9999999 5666778999999998754
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=6.2e-15 Score=166.47 Aligned_cols=285 Identities=28% Similarity=0.451 Sum_probs=225.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCC-EEEEEEcCCcEEEEEcCCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST-CLASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~-~Lasgs~Dg~V~iwdl~~g 93 (945)
+|...|.+++|+|++..+++++..++.+++|+.... .....+..|...|.+++|+|++. .+++++.|+.|++|+...+
T Consensus 153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 566889999999999988877523999999998764 44566777999999999999998 5555589999999998877
Q ss_pred eeee-ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeE-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 94 EFQT-NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI-ARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 94 ~~~~-~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
.... .+..|.... ...|++++..+++++.++.+++|++..... ...+..|...|.++.|+|++..+++++.|+.+.+
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~ 310 (466)
T COG2319 232 KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310 (466)
T ss_pred cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEE
Confidence 7776 577777665 448999998999999999999999987664 4444678899999999998888888998989999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCC
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP-GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g-s~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
||+.+........ ...+...+..+.|.+++..++.+ ..++.+.+|+............ ...+..+.+++ ..
T Consensus 311 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 382 (466)
T COG2319 311 WDLETGKLLSSLT-----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG--HSNVLSVSFSP-DG 382 (466)
T ss_pred EEcCCCceEEEee-----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC--CceEEEEEECC-CC
Confidence 9988876655544 11233467888884343566666 5788999999988773333332 22288899998 54
Q ss_pred EEEE-EECCCeEEEEECCCCeeeeeccCC-CCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 251 YMAT-SSLDRQILIWDVGKKLDIDRQKFD-DRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 251 ~Las-gs~Dg~I~IWD~~~~~~i~~~~~~-~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
.++. +..++.+.+|+............. ..+....+.+++..++.++.++.+.+|+...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 4444 678999999999998888776655 7899999999999999999999999999876
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.6e-15 Score=170.47 Aligned_cols=275 Identities=12% Similarity=0.130 Sum_probs=184.6
Q ss_pred CEEEEEEcCCCeEEEEcCCCCcc--ccccccccccceEEEEEecCCCEEEEEE-cCCcEEEEEcC-CCee--eeecccCC
Q 002266 30 HHLVTASSSETTISIHDPLLPSN--LPKILRHHRDGVTALALSPNSTCLASGS-IDHSVKLYKFP-GGEF--QTNITRFT 103 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~--~~~~l~~h~~~V~~la~spdg~~Lasgs-~Dg~V~iwdl~-~g~~--~~~l~~~~ 103 (945)
.+++++...++.|.+|++.+... ....+. +.+....++++|++++|++++ .++.|.+|++. ++.. ..... ..
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~ 79 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP 79 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC
Confidence 34556655799999999864322 223332 345678899999999987765 47889999986 3432 22222 23
Q ss_pred CCEEEEEEecCCCEEEEEEC-CCcEEEEEcCC-Ce---EEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 002266 104 LPIRVLAFNKSGSMLAAAGD-DEGIKLINTID-GS---IARVLKGHKGPVTGLAFDPNSEYLASID-SIGTVIYWELQSG 177 (945)
Q Consensus 104 ~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~-~~---~~~~l~~h~~~V~~lafspdg~~Las~s-~Dg~I~iwDl~t~ 177 (945)
.....++|+|++++|++++. ++.|.+|++.+ +. .+..+. +.....+++++|+++++++++ .++.|.+||+.+.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 45678999999999888864 78899999964 32 222222 334567789999999886554 5689999999764
Q ss_pred eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCC--Cc--EEEeecC-----CCCCCeEEEEEcC
Q 002266 178 RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDT--AE--KLFSLRG-----DHVQPICFLSWSP 247 (945)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t--~~--~~~~~~~-----~h~~~I~~l~fSp 247 (945)
..+.......... ........++|+|+|+++++... ++.|.+|++.. ++ .+..+.. .+......+.|+|
T Consensus 159 g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3222110000000 01233567999999999988876 89999999973 22 2333321 0112234688999
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCe----eeeeccCCCCeeEEEEecCCCEEEEEEc-CCeEEEEecC
Q 002266 248 NGKYMATSSL-DRQILIWDVGKKL----DIDRQKFDDRICCMAWKPIGNALAVIDV-MGKYGVWESV 308 (945)
Q Consensus 248 dg~~Lasgs~-Dg~I~IWD~~~~~----~i~~~~~~~~V~~la~spdg~~Las~s~-DG~I~iWd~~ 308 (945)
+|++|+++.. ++.|.+|++.... .+...........++|+|+|++|++++. ++.|.+|++.
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999998854 7899999985432 2222222345678999999999988775 8899999875
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=4.4e-17 Score=175.56 Aligned_cols=245 Identities=22% Similarity=0.295 Sum_probs=185.8
Q ss_pred EEEEECC-------CCCEEEEEEcCCCeEEEEcCCCCcc-cc-------------------ccccccccceEEEEEecC-
Q 002266 21 CSILWDQ-------QAHHLVTASSSETTISIHDPLLPSN-LP-------------------KILRHHRDGVTALALSPN- 72 (945)
Q Consensus 21 ~svafsp-------dg~~L~t~g~~dg~V~IWd~~~~~~-~~-------------------~~l~~h~~~V~~la~spd- 72 (945)
.|++|.. -|+++|+|+ .+..|.|||+.-... .+ ....+|+..|.+|+|+..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGt-mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGT-MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEec-cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 4566643 356888876 999999999642211 00 112368889999999874
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEE
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGL 151 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~l 151 (945)
.+.||+|+.|.+|++||+.+|++...+..|...|.++.|+| ...+|++|+.|++|.+.|.+........-...+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 46899999999999999999999999999999999999999 56789999999999999999643333333356889999
Q ss_pred EEccCCC-EEEEEeCCCcEEEEEccCC-eeeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcE
Q 002266 152 AFDPNSE-YLASIDSIGTVIYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPGLKNDVVMYDRDTAEK 228 (945)
Q Consensus 152 afspdg~-~Las~s~Dg~I~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs~dg~I~vwD~~t~~~ 228 (945)
+|+|... .+++++.||+|+-+|+|.. +++.+++ .|...|.++++++. ..++++++.++.|++|++..-.+
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEE-------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 9999655 6677788999999999986 6677665 56678999999984 56788899999999999875443
Q ss_pred EEeecC-CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeeee
Q 002266 229 LFSLRG-DHVQPICFLSWSPNGK-YMATSSLDRQILIWDVGKKLDID 273 (945)
Q Consensus 229 ~~~~~~-~h~~~I~~l~fSpdg~-~Lasgs~Dg~I~IWD~~~~~~i~ 273 (945)
...... -.-+...|.++.|+-. ++|.|+..+.++|||+.+...+.
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 221110 0113456667777544 57778888899999998765543
No 167
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.9e-17 Score=176.63 Aligned_cols=305 Identities=15% Similarity=0.223 Sum_probs=233.8
Q ss_pred cccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec--CCCEEEEEEc
Q 002266 4 RSVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP--NSTCLASGSI 81 (945)
Q Consensus 4 ~~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp--dg~~Lasgs~ 81 (945)
+++.+.+... +|.+.|..|.|+..|..|++++ .|..|.+||............+|...|....|-| +.+-+++++.
T Consensus 130 qr~~l~~kL~-~H~GcVntV~FN~~Gd~l~SgS-DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 130 QRLRLQKKLN-KHKGCVNTVHFNQRGDVLASGS-DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred HHhhhhhccc-CCCCccceeeecccCceeeccC-ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 3445555556 7889999999999999999886 9999999999988777777889999999999988 4478999999
Q ss_pred CCcEEEEEcCCC-ee--eeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEE---ecCCC---CEEEE
Q 002266 82 DHSVKLYKFPGG-EF--QTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVL---KGHKG---PVTGL 151 (945)
Q Consensus 82 Dg~V~iwdl~~g-~~--~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l---~~h~~---~V~~l 151 (945)
||.|++=.+... .+ ...+..|.++|.-++.-|+. ..|.+++.|+.+.-+|++.+.....+ ..+.. ....+
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 999999876533 22 34567899999999999854 56899999999999999876543322 22333 56789
Q ss_pred EEccCCC-EEEEEeCCCcEEEEEccCCeee------eeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC
Q 002266 152 AFDPNSE-YLASIDSIGTVIYWELQSGREL------HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD 224 (945)
Q Consensus 152 afspdg~-~Las~s~Dg~I~iwDl~t~~~i------~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~ 224 (945)
+.+|... .+++++.|..+++||.+.-... ..+... .........|++++|+.++.-|++...|-.|++|...
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc-cccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 9999655 7899999999999998764221 222211 1122445678999999888778887889999999543
Q ss_pred C--C----------cEEEe-ecCCCCC--CeEEEE-EcCCCCEEEEEECCCeEEEEECCCCeeeeeccC-CCCeeEEEEe
Q 002266 225 T--A----------EKLFS-LRGDHVQ--PICFLS-WSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF-DDRICCMAWK 287 (945)
Q Consensus 225 t--~----------~~~~~-~~~~h~~--~I~~l~-fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~~~V~~la~s 287 (945)
- + ..+.. +++ |.. .|..+- |-|...|+++|+.-|.|.||+-.+++.+..... ..-|.||.=+
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH 445 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH 445 (559)
T ss_pred cccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC
Confidence 2 2 11222 344 543 466665 578899999999999999999999998887443 3478999999
Q ss_pred cCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 288 PIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 288 pdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
|--..||+++-|..|+||.....+.
T Consensus 446 P~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred CCCchhhccCCccceeeecCCcccc
Confidence 9999999999999999998755554
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=1e-16 Score=173.08 Aligned_cols=250 Identities=18% Similarity=0.206 Sum_probs=191.6
Q ss_pred ccccccccceEEEEEecCC--CEEEEEEcCCcEEEEEcCCC----eeeeecccCCCCEEEEEEec-CCCEEEEEECCCcE
Q 002266 55 KILRHHRDGVTALALSPNS--TCLASGSIDHSVKLYKFPGG----EFQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGI 127 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg--~~Lasgs~Dg~V~iwdl~~g----~~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I 127 (945)
...+.+.+.|++++|+|.. +++++|..-|+|-+||+.+. .-+..+..|..+|.++.|+| +-..+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3455678999999999943 68888999999999999532 23455678899999999999 45689999999999
Q ss_pred EEEEcCCCeE--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCee-eeeecccCCCCCCCCCCceEEEEcC
Q 002266 128 KLINTIDGSI--ARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSP 204 (945)
Q Consensus 128 ~iwd~~~~~~--~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~-i~~~~~~~~~~~~~~~~i~~l~~sp 204 (945)
++-|++.+.. +..+......+.++.|+.+...++.+..=|...+||++++.. ...+. .|...|+.++++|
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-------lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-------LHKKKITSVALNP 332 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-------hhhcccceeecCC
Confidence 9999987643 333333556678888988888788887778999999998754 22222 3445789999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEE---eecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCeeeeecc
Q 002266 205 -DGETLAVPGLKNDVVMYDRDTAEKLF---SLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVG----KKLDIDRQK 276 (945)
Q Consensus 205 -dg~~La~gs~dg~I~vwD~~t~~~~~---~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~----~~~~i~~~~ 276 (945)
...+|++++.|++++|||++...... ...-.|...|.+..|||.|-.|+|.+.|..|+|||.. .-.....+.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 56789999999999999998643222 1122489999999999987779999999999999983 334444444
Q ss_pred CCC------CeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 277 FDD------RICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 277 ~~~------~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
|.. ......|.|+..++++|..-..|-|++..-+.
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 432 24567899999999999888888888765444
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=1.5e-15 Score=155.64 Aligned_cols=273 Identities=21% Similarity=0.307 Sum_probs=196.9
Q ss_pred CEEEEEEC--CCCC-EEEEEEc---CCCeEEEEcCCCCc--cccccccccccceEEEEEecCC-----CEEEEEEcCCcE
Q 002266 19 SFCSILWD--QQAH-HLVTASS---SETTISIHDPLLPS--NLPKILRHHRDGVTALALSPNS-----TCLASGSIDHSV 85 (945)
Q Consensus 19 ~V~svafs--pdg~-~L~t~g~---~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~spdg-----~~Lasgs~Dg~V 85 (945)
.+.++.|+ |+.+ +|+.++- ..+.|.|-.+.... .....-..|.-+++.+.|.|+. ++||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 57888898 3443 5666542 34566665543322 2222234688999999999976 3666644 379
Q ss_pred EEEEcCC--Ceee--e-----ecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCe---EEEEEecCCCCEEEEE
Q 002266 86 KLYKFPG--GEFQ--T-----NITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGS---IARVLKGHKGPVTGLA 152 (945)
Q Consensus 86 ~iwdl~~--g~~~--~-----~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~---~~~~l~~h~~~V~~la 152 (945)
++|.+.. .+.. . .-..+..++++..|+. +-++|.+.+-|-+..|||++++. ....+-.|...|..|+
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999863 2211 1 1124567899999987 67889999999999999999863 3566788999999999
Q ss_pred EccCCC-EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeC-CCeEEEEECCCCc-E
Q 002266 153 FDPNSE-YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGL-KNDVVMYDRDTAE-K 228 (945)
Q Consensus 153 fspdg~-~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~-dg~I~vwD~~t~~-~ 228 (945)
|...+. .+|+.+.||.|++||++.......+.... ....+...++|++ |-+++|+-.. ...|.|.|++... +
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p----~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP----SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCC----CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 998654 78999999999999999865443332211 1135678899998 5677776544 4579999998754 5
Q ss_pred EEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCee------eeeccCCCCeeEEEEecC-CCEEEEEEc
Q 002266 229 LFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKKLD------IDRQKFDDRICCMAWKPI-GNALAVIDV 298 (945)
Q Consensus 229 ~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~~~------i~~~~~~~~V~~la~spd-g~~Las~s~ 298 (945)
+..+.+ |.+.|+.++|.|. ...|++++.|..+.|||+...-. +......+.|..+.|++. +..|+.+..
T Consensus 280 va~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 280 VARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eehhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 677776 9999999999994 67899999999999999976322 222345678999999975 446666644
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4.3e-17 Score=180.23 Aligned_cols=257 Identities=16% Similarity=0.222 Sum_probs=196.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCC-------ccccccccccccceEEEEEecCCCEEEEEEcCCcEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLP-------SNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKL 87 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~-------~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~i 87 (945)
.|...|++++|.|....|++++ .||.+.+|++... -....++.+|.++|.|+++.+++..+++|+.||+|+.
T Consensus 292 s~~d~ir~l~~~~sep~lit~s-ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITAS-EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEec-cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 6778999999999999999996 9999999998321 1334578899999999999999999999999999999
Q ss_pred EEcCCC----------eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC--CCCEEEEEEcc
Q 002266 88 YKFPGG----------EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH--KGPVTGLAFDP 155 (945)
Q Consensus 88 wdl~~g----------~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h--~~~V~~lafsp 155 (945)
|++... .....+.+|...|+.++++.....|++++.||+++.|+...... .++... .+.-.++.+-.
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeecc
Confidence 976521 23456788999999999999999999999999999999876655 333221 23334555543
Q ss_pred CC-CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecC
Q 002266 156 NS-EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 156 dg-~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~ 234 (945)
.. ...++...-+.-.++++.....+..+.............++.+.++|.+.+.+++..++.|+++|..++..++....
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee
Confidence 22 22333333334444455444444444332222222335678899999999999999999999999999999988876
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002266 235 DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR 274 (945)
Q Consensus 235 ~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~ 274 (945)
|...++++++.|+|-+|++++.|+.+++|.+....++..
T Consensus 530 -~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 530 -HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred -ccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 889999999999999999999999999999977665543
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=3.6e-16 Score=170.95 Aligned_cols=265 Identities=17% Similarity=0.212 Sum_probs=193.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEc-CCCCccccccccccccceE-EEEEec-------CCCEEEEEEcCCcE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHD-PLLPSNLPKILRHHRDGVT-ALALSP-------NSTCLASGSIDHSV 85 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd-~~~~~~~~~~l~~h~~~V~-~la~sp-------dg~~Lasgs~Dg~V 85 (945)
-|...|+|+.|+.....+.++ .|..+.+|. +.+..... +.-...-|. .+-.-+ ....|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~--dDh~~~~~~~~~~~s~~~--~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS--DDHQIFKWSDVSRDSVEV--AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEec--cCceEEEeecccchhhhh--hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 356889999999888777665 466666664 43322111 111111111 111111 23578888999999
Q ss_pred EEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002266 86 KLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 86 ~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~ 165 (945)
.|.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|-...++.....+|+|++|.|+.+-++.|-.
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 9987 567777888899999999999999999999999999999984 55555555566789999999998887666543
Q ss_pred CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEE
Q 002266 166 IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSW 245 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~f 245 (945)
+.+.|=.+.....+..++ .|.+.|.++.|++..+.+++|+.|-..+|||-. |..++.-.. |..+|++++|
T Consensus 166 -~h~~IKpL~~n~k~i~Wk-------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-~ey~ITSva~ 235 (737)
T KOG1524|consen 166 -GHISIKPLAANSKIIRWR-------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-EEYAITSVAF 235 (737)
T ss_pred -CeEEEeecccccceeEEe-------ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-hccceeeeee
Confidence 566666655444444443 577889999999999999999999999999986 666666554 8999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 246 SPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 246 Spdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
.|+ ..++.++. ++++ ......+.|..++|++||..++.|+..|.+.+=-.
T Consensus 236 npd-~~~~v~S~-nt~R----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 236 NPE-KDYLLWSY-NTAR----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ccc-cceeeeee-eeee----------ecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 999 55665553 3344 11123468999999999999999999998776443
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.3e-15 Score=174.95 Aligned_cols=291 Identities=19% Similarity=0.219 Sum_probs=207.2
Q ss_pred CCCCEEEEEECCCCC--EEEEE-----------------EcCCCeEEEEcCCCCccccccccccccceEEEEEec-CCCE
Q 002266 16 NAASFCSILWDQQAH--HLVTA-----------------SSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP-NSTC 75 (945)
Q Consensus 16 h~~~V~svafspdg~--~L~t~-----------------g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp-dg~~ 75 (945)
+...+.++.|.|++. ..... ...++.+.||++..+ ..+...-.....|+|+.|+| +..+
T Consensus 179 ~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~l 257 (555)
T KOG1587|consen 179 PKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNL 257 (555)
T ss_pred hhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEEecCCceeEEEeccCCcce
Confidence 345677788888776 11111 012347899999887 33444444578999999999 6688
Q ss_pred EEEEEcCCcEEEEEcCCCee--ee----ecccCCCCEEEEEEecCCC--EEEEEECCCcEEEEEcCCCeE-EE-----EE
Q 002266 76 LASGSIDHSVKLYKFPGGEF--QT----NITRFTLPIRVLAFNKSGS--MLAAAGDDEGIKLINTIDGSI-AR-----VL 141 (945)
Q Consensus 76 Lasgs~Dg~V~iwdl~~g~~--~~----~l~~~~~~V~~l~fspdg~--~Lasgs~Dg~I~iwd~~~~~~-~~-----~l 141 (945)
|+.|+.+|+|.+||+..+.. .. ....|..++..+.|..+-. -+++++.||.|..|+++.-.. .. ..
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 88999999999999987654 22 2345788999999987544 499999999999998864321 10 11
Q ss_pred e------cCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeee--eeecccCCCCCCCCCCceEEEEcCCCCEEEEE
Q 002266 142 K------GHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGREL--HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP 212 (945)
Q Consensus 142 ~------~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~i--~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g 212 (945)
. .....+++++|.+ +...+++|+..|.|..-+......- ..++. ......|.++++.+.++|=+..++..
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~-~~~~~~h~g~v~~v~~nPF~~k~fls 416 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG-HSTFITHIGPVYAVSRNPFYPKNFLS 416 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc-cccccccCcceEeeecCCCccceeee
Confidence 1 1234688999998 4567889999998877433222111 11121 12334677899999999965544444
Q ss_pred eCCCeEEEEECC-CCcEEEeecCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC--eeeeecc-CCCCeeEEEEe
Q 002266 213 GLKNDVVMYDRD-TAEKLFSLRGDHVQPICFLSWSPNG-KYMATSSLDRQILIWDVGKK--LDIDRQK-FDDRICCMAWK 287 (945)
Q Consensus 213 s~dg~I~vwD~~-t~~~~~~~~~~h~~~I~~l~fSpdg-~~Lasgs~Dg~I~IWD~~~~--~~i~~~~-~~~~V~~la~s 287 (945)
+.|..++||... ...++..+.. +...|++++|||.. ..++++..||.|.|||+... .++.... .....+.+.|+
T Consensus 417 ~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 417 VGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS 495 (555)
T ss_pred eccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecC
Confidence 449999999988 6667777765 66779999999954 57788888999999999653 3333322 24567788899
Q ss_pred cCCCEEEEEEcCCeEEEEecCC
Q 002266 288 PIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 288 pdg~~Las~s~DG~I~iWd~~~ 309 (945)
+.|+.|++|+..|.+.+|++..
T Consensus 496 ~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 496 PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999999999999853
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=1.1e-15 Score=162.25 Aligned_cols=265 Identities=14% Similarity=0.199 Sum_probs=194.3
Q ss_pred CEEEEEECC-----CCCEEEEEE--cCCCeEEEEcCCCCc---cccccccccccceEEEEEec-CCCEEEEEEcCCcEEE
Q 002266 19 SFCSILWDQ-----QAHHLVTAS--SSETTISIHDPLLPS---NLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKL 87 (945)
Q Consensus 19 ~V~svafsp-----dg~~L~t~g--~~dg~V~IWd~~~~~---~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~i 87 (945)
.|+.+.|.. +.++|++.. +..|...|.-+...+ ...-.+.+|.++|..++|+| +...||+|+.|.+|.|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v 108 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV 108 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence 455666643 345555432 233344444332222 12235679999999999999 6678999999999999
Q ss_pred EEcCCCe-------eeeecccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCE
Q 002266 88 YKFPGGE-------FQTNITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159 (945)
Q Consensus 88 wdl~~g~-------~~~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~ 159 (945)
|.+..+. .+..+.+|...|..++|+|. .+.|++++.|..|.+|++.+++.+.++. |.+.|+++.|+.+|.+
T Consensus 109 W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 109 WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL 187 (472)
T ss_pred EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCce
Confidence 9997653 35567889999999999995 4678999999999999999999888887 9999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEEeec-CC
Q 002266 160 LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG---LKNDVVMYDRDTAEKLFSLR-GD 235 (945)
Q Consensus 160 Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs---~dg~I~vwD~~t~~~~~~~~-~~ 235 (945)
|++++.|..|+|||.++++.+..-..+. ......+.|-.+|..+-+|. .+..+.+||..+.+....+. -.
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 9999999999999999999887654322 23345678888898555543 36689999987765332221 12
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeee----eccCCCCeeEEEEecCC
Q 002266 236 HVQPICFLSWSPNGKYMATSS-LDRQILIWDVGKKLDID----RQKFDDRICCMAWKPIG 290 (945)
Q Consensus 236 h~~~I~~l~fSpdg~~Lasgs-~Dg~I~IWD~~~~~~i~----~~~~~~~V~~la~spdg 290 (945)
....|.---|.++...++.++ .|+.|+-|.+....+.. .+....+-.++.|-|..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 455677677889888776555 59999999998765322 23445566777777753
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=1.1e-16 Score=166.50 Aligned_cols=249 Identities=18% Similarity=0.265 Sum_probs=189.2
Q ss_pred CCCCCEEEEEECCCC----CEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCC-CEEEEEEcCCcEEEEE
Q 002266 15 GNAASFCSILWDQQA----HHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVKLYK 89 (945)
Q Consensus 15 gh~~~V~svafspdg----~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwd 89 (945)
.|......++|+-+- .+||++| .-|.|+|.|+.+. .....+.+|...|..|.++|+. +++++++.|..|++|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G-~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGG-YLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeec-ceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 477888999997542 3566665 8999999999876 6677889999999999999954 7999999999999999
Q ss_pred cCCCeeeeecc---cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeE------E----------------------
Q 002266 90 FPGGEFQTNIT---RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI------A---------------------- 138 (945)
Q Consensus 90 l~~g~~~~~l~---~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~------~---------------------- 138 (945)
+.+..++..+. +|...|.++.|+++|.+|++++.|..|++|++...+. .
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 99999887764 6888999999999999999999999999999973210 0
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeeeeeecccC------CCCCCCCCCce--EEEEcCCCCEE
Q 002266 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ-SGRELHNLKRVA------PDIGSDPSSMN--VLSWSPDGETL 209 (945)
Q Consensus 139 ~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~-t~~~i~~~~~~~------~~~~~~~~~i~--~l~~spdg~~L 209 (945)
.+-.-|...|-|+.|- |+++++-+.++.|..|-.. -++.++.++... .........+. ..+|.|-++.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0112367777788876 6889999999999999872 222222221100 01111223333 35566778999
Q ss_pred EEEeCCCeEEEEECCCCcEEE--eec-CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002266 210 AVPGLKNDVVMYDRDTAEKLF--SLR-GDHVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 210 a~gs~dg~I~vwD~~t~~~~~--~~~-~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~ 267 (945)
|.|...|.|++||++..++.. ++. ......|...+||.||.+|+..+.|++|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999776531 111 1134578899999999999999999999999853
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.2e-15 Score=147.68 Aligned_cols=279 Identities=13% Similarity=0.126 Sum_probs=201.7
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC---------CccccccccccccceEEEEEecCCCEEEEEEcCCcEEEE
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLL---------PSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~---------~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iw 88 (945)
..|.+-+|+|.+++|+++. .+|.|.+..+.. ++.......+|.++|+.++|.. .+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEe
Confidence 3477778999999999886 999999997542 1122234478999999999983 4777765 5999999
Q ss_pred EcCCCeee----e----ecccC-----CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc
Q 002266 89 KFPGGEFQ----T----NITRF-----TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155 (945)
Q Consensus 89 dl~~g~~~----~----~l~~~-----~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp 155 (945)
........ . ....+ --.|.++...|..+-++.++.|+.++-||+++|+..+++++|++.|.++.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 87543210 0 01111 12578888998888888888999999999999999999999999999999855
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCC---CCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee
Q 002266 156 NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGS---DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 156 dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~---~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~ 232 (945)
....+++|+.||++++||+++++.+..+......... ....|.++ .-+..++++|+ ...+.+|.++..++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEEE
Confidence 5667999999999999999999998887654322111 11223333 44566787775 678999999999988877
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCC-CEEEEEEcCCeEEEEec
Q 002266 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIG-NALAVIDVMGKYGVWES 307 (945)
Q Consensus 233 ~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg-~~Las~s~DG~I~iWd~ 307 (945)
+ -..++..+.|.. ..+++++..+.|.-|.+..-............++..|+... ++|..++....+.|+..
T Consensus 244 p--ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 244 P--IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILKD 315 (325)
T ss_pred e--cccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeeec
Confidence 6 356788888854 47888887888999987654333333333445666676544 35556677777777754
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=162.51 Aligned_cols=270 Identities=16% Similarity=0.199 Sum_probs=193.7
Q ss_pred EEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec--CCCEEEEEEcCCcEEEEEcCCCeeeeec--ccCC-CC
Q 002266 31 HLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP--NSTCLASGSIDHSVKLYKFPGGEFQTNI--TRFT-LP 105 (945)
Q Consensus 31 ~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp--dg~~Lasgs~Dg~V~iwdl~~g~~~~~l--~~~~-~~ 105 (945)
.+|++. ..|.|++||..++ +....+.++...+..+.|.. ....+.+|+.||+|++||++.......+ ..+. .+
T Consensus 42 ~vav~l-Sngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 42 AVAVSL-SNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eEEEEe-cCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 356554 8999999999885 66778899999999999987 4578899999999999999876554433 2333 46
Q ss_pred EEEEEEecCCCEEEEEEC----CCcEEEEEcCCCeE-EEE-EecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCe
Q 002266 106 IRVLAFNKSGSMLAAAGD----DEGIKLINTIDGSI-ARV-LKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGR 178 (945)
Q Consensus 106 V~~l~fspdg~~Lasgs~----Dg~I~iwd~~~~~~-~~~-l~~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~ 178 (945)
..+++.+.+++.+++|+. +-.|.+||++..+. +.. ...|...|+++.|+| +.++|++|+.||.|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 777887778888888854 56799999998765 444 457999999999999 56799999999999999997653
Q ss_pred eeeeecccCCCCCCCCCCceEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEeecCCCC-----------CCeEEEEEc
Q 002266 179 ELHNLKRVAPDIGSDPSSMNVLSWSPDG-ETLAVPGLKNDVVMYDRDTAEKLFSLRGDHV-----------QPICFLSWS 246 (945)
Q Consensus 179 ~i~~~~~~~~~~~~~~~~i~~l~~spdg-~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~-----------~~I~~l~fS 246 (945)
.--.+.. .-.+.+.|.++.|+.++ +.|.+-+......+|++..+.....+..+.. ..+.. +.+
T Consensus 200 EeDaL~~----viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~ 274 (376)
T KOG1188|consen 200 EEDALLH----VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHS 274 (376)
T ss_pred chhhHHH----hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-ccc
Confidence 2211111 11344668899999877 4577778899999999998876555443100 01111 123
Q ss_pred C-CCCEEEEEEC-CCeEEEEECC---CCeeee-----eccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 247 P-NGKYMATSSL-DRQILIWDVG---KKLDID-----RQKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 247 p-dg~~Lasgs~-Dg~I~IWD~~---~~~~i~-----~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
| ++.+++.++. -+...++-+. ++.... .-+|..-|.++.|...+..+.+|+.||.+.+|..
T Consensus 275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4 4445555544 4555555433 222221 1235567889999988999999999999999986
No 177
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=3.4e-15 Score=155.21 Aligned_cols=296 Identities=16% Similarity=0.187 Sum_probs=211.2
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEE-EcCCcEEEEEcCCCeeeeeccc
Q 002266 23 ILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASG-SIDHSVKLYKFPGGEFQTNITR 101 (945)
Q Consensus 23 vafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasg-s~Dg~V~iwdl~~g~~~~~l~~ 101 (945)
++|||+|+++|++. +..+.|-|..+- ++.+.+. .-+.|.-|.|..|..+++++ ..++.|.+|++...+-...+..
T Consensus 14 c~fSp~g~yiAs~~--~yrlviRd~~tl-q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS--RYRLVIRDSETL-QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeee--eeEEEEeccchh-hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 45999999999985 568889887665 3333332 25678889999988766654 6788999999998888888888
Q ss_pred CCCCEEEEEEecCCCEEEE-EECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCC-------------
Q 002266 102 FTLPIRVLAFNKSGSMLAA-AGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG------------- 167 (945)
Q Consensus 102 ~~~~V~~l~fspdg~~Las-gs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg------------- 167 (945)
...++..++|||+|+.|+. ..-+-.|.||.+.+.+... +.-.+..+..++|+|+|++.+.++.-.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8999999999999966555 5568889999998766443 222345568899999999888765321
Q ss_pred -----------------------cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC
Q 002266 168 -----------------------TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD 224 (945)
Q Consensus 168 -----------------------~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~ 224 (945)
.+.+||.--.-.+. .....-.+..+.|+|.+++|++|+.|+.+++.+--
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--------aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--------AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheee--------eeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 12233311110000 00112456789999999999999999998877643
Q ss_pred CCcEEEe------------------------------------------------------------ecC-----CCCCC
Q 002266 225 TAEKLFS------------------------------------------------------------LRG-----DHVQP 239 (945)
Q Consensus 225 t~~~~~~------------------------------------------------------------~~~-----~h~~~ 239 (945)
+|+...+ ++. .....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 3221111 100 01234
Q ss_pred eEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCCCCCC
Q 002266 240 ICFLSWSPNGKYMATSSL--DRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSPT 317 (945)
Q Consensus 240 I~~l~fSpdg~~Lasgs~--Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~~~~~ 317 (945)
+.-++||+|..|+++-.. -..+.|||++..++........+|....|+|....|+.+.....+++|...-+.....|.
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~ 400 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK 400 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC
Confidence 667899999999998764 367999999998887777777899999999999999999999999999987666554444
Q ss_pred C--CCCCCccCCCCce
Q 002266 318 E--DIPSSRSNYNGLL 331 (945)
Q Consensus 318 ~--~~~~~~~~~~~~~ 331 (945)
. .+.++.|...+..
T Consensus 401 ~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGEF 416 (447)
T ss_pred CCceeeeEEecCCCcE
Confidence 3 4555666544443
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.4e-16 Score=174.49 Aligned_cols=251 Identities=20% Similarity=0.218 Sum_probs=193.7
Q ss_pred cccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC--------CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcE
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG--------GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGI 127 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~--------g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I 127 (945)
++..|.+.|++++|.|....|++++.||++.+|++.. -+.+..+..|.++|.|+++.+++..+++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4567889999999999999999999999999999932 24567788999999999999999999999999999
Q ss_pred EEEEcCCC----------eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCc
Q 002266 128 KLINTIDG----------SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSM 197 (945)
Q Consensus 128 ~iwd~~~~----------~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i 197 (945)
+.|++... .....+.+|.+.|+.+++++....|++++.||+++.|+...... .++.... .....
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~-----e~g~P 442 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK-----EHGYP 442 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc-----ccCCc
Confidence 99965421 23456789999999999999999999999999999999866554 2232211 11222
Q ss_pred eEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEeecCC------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 002266 198 NVLSWSPDG-ETLAVPGLKNDVVMYDRDTAEKLFSLRGD------HVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 198 ~~l~~spdg-~~La~gs~dg~I~vwD~~t~~~~~~~~~~------h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
.++.+-... ...++...-+.-.+++......+..+... ....+..+.+.|++.+.+++..|+.|+++|..++.
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 344443322 22233333344444555555444444321 12357788999999999999999999999999999
Q ss_pred eeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 271 DIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 271 ~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
++.. ..|...++++++.|+|.+|++++.||.+++|.+..+.+
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 8877 67889999999999999999999999999999876654
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=8.6e-16 Score=164.06 Aligned_cols=247 Identities=21% Similarity=0.272 Sum_probs=181.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCC--------C-----C--ccccccccccccceEEEEEecCCCEEEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPL--------L-----P--SNLPKILRHHRDGVTALALSPNSTCLASG 79 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~--------~-----~--~~~~~~l~~h~~~V~~la~spdg~~Lasg 79 (945)
.|...|++|.|+|+|..|++++ .+|.|.+|... + . -.....+.+|...|..++|+|++.+++++
T Consensus 63 ~H~~aVN~vRf~p~gelLASg~-D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 63 RHTRAVNVVRFSPDGELLASGG-DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred CCcceeEEEEEcCCcCeeeecC-CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 5669999999999999999987 99999999754 1 1 02234567899999999999999999999
Q ss_pred EcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe-----------------
Q 002266 80 SIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK----------------- 142 (945)
Q Consensus 80 s~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~----------------- 142 (945)
+.|..+++||+..|+....+..|...+..++|.|-+.++++-+.|...+++.+.....+....
T Consensus 142 s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~ 221 (434)
T KOG1009|consen 142 SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKST 221 (434)
T ss_pred eccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCccee
Confidence 999999999999999999999999999999999999999999988876666654332221111
Q ss_pred --cCC----CCEEEEEEccCCCEEEEEeC----CCcE-----EEEEccCC-eeeeeecccCCCCCCCCCCceEEEEc---
Q 002266 143 --GHK----GPVTGLAFDPNSEYLASIDS----IGTV-----IYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWS--- 203 (945)
Q Consensus 143 --~h~----~~V~~lafspdg~~Las~s~----Dg~I-----~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~s--- 203 (945)
-|. .....++|+|+|.+|++... .+.+ ++|+-..- ++...+. ....+...+.|+
T Consensus 222 rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-------~~~k~~lavr~~pVy 294 (434)
T KOG1009|consen 222 RLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-------SPKKPALAVRFSPVY 294 (434)
T ss_pred eeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC-------CCCcceEEEEeeeeE
Confidence 021 23456889999999887542 2222 33332110 1111111 111112222222
Q ss_pred ---------------CCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002266 204 ---------------PDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 204 ---------------pdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~ 268 (945)
|.+-.+++++ .+.|++||..+..++..+..-|-..|+.++|+++|.+|+..+.||...+.-++.
T Consensus 295 ~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 295 YELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 3344566666 668999999999999888888999999999999999999999999877766655
Q ss_pred Ce
Q 002266 269 KL 270 (945)
Q Consensus 269 ~~ 270 (945)
.+
T Consensus 374 ~e 375 (434)
T KOG1009|consen 374 WE 375 (434)
T ss_pred hh
Confidence 44
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=5.2e-17 Score=185.24 Aligned_cols=276 Identities=18% Similarity=0.269 Sum_probs=217.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
||.+.|+|+.|...|.++++++ .|..|+||...+. .+...+.+|.+.|+.++.+.+..++++++.|..|++|.+.++.
T Consensus 188 gH~naVyca~fDrtg~~Iitgs-dd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGS-DDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecC-ccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 7779999999999999999986 9999999997776 6678899999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE---E-ecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV---L-KGHKGPVTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~---l-~~h~~~V~~lafspdg~~Las~s~Dg~I~ 170 (945)
.+..+.+|++.|++|+|+|-. +.+.||++++||.+-...+.. + .....-+.++.|...+.-+++++.|+.-.
T Consensus 266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 999999999999999999954 778999999999871111111 0 01235677888888888999999999888
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-C
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP-N 248 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp-d 248 (945)
.|.+..-.. +...+.-+..+.+ ..+.+++-.+..+.+|++.++...+.+.+ |...+..+.++| +
T Consensus 342 n~e~~~l~~-------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 342 NHEFEQLAW-------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFN 407 (1113)
T ss_pred cchhhHhhh-------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceeeeeecCCC
Confidence 886532110 0001111122212 13455555677899999999988887776 899999999999 5
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeecc-CCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 249 GKYMATSSLDRQILIWDVGKKLDIDRQK-FDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 249 g~~Lasgs~Dg~I~IWD~~~~~~i~~~~-~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
.+...+++.||.+.|||+-.+..+.... ....+..-.|+++|..++....-|.++|....-+
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 6667788999999999998887766522 2456777789999999999998999999875433
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=2.2e-14 Score=161.35 Aligned_cols=263 Identities=14% Similarity=0.139 Sum_probs=174.0
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc--cccccccccceEEEEEecCCCEEEEEEc-CCcEEEEEcCC-C
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNL--PKILRHHRDGVTALALSPNSTCLASGSI-DHSVKLYKFPG-G 93 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~--~~~l~~h~~~V~~la~spdg~~Lasgs~-Dg~V~iwdl~~-g 93 (945)
+....++++|++++|++++..++.|.+|++...... .... ...+....++|+|++++|++++. ++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 456778999999999888767899999998632221 1111 12335678999999999988764 78999999864 3
Q ss_pred ee---eeecccCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeEEE-------EEecCCCCEEEEEEccCCCEEEE
Q 002266 94 EF---QTNITRFTLPIRVLAFNKSGSMLAAAG-DDEGIKLINTIDGSIAR-------VLKGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 94 ~~---~~~l~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~~~~~-------~l~~h~~~V~~lafspdg~~Las 162 (945)
.. ...+. .......++++|+++++++++ .++.|.+||+.+...+. ... .......++|+|+|++|++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEE
Confidence 22 22222 223467789999999886665 46899999997633221 111 2244678999999999988
Q ss_pred EeC-CCcEEEEEccC--Ce--eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCCCcE----EEee
Q 002266 163 IDS-IGTVIYWELQS--GR--ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDTAEK----LFSL 232 (945)
Q Consensus 163 ~s~-Dg~I~iwDl~t--~~--~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t~~~----~~~~ 232 (945)
+.. ++.|.+|++.. +. .+..+....... ........+.++|+|++++++.. ++.|.+|++..... +..+
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADF-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 876 89999999974 22 233332211111 11222346889999999999854 68999999864432 2222
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCee--eeeccCCCCeeEEEE
Q 002266 233 RGDHVQPICFLSWSPNGKYMATSSL-DRQILIWDVG--KKLD--IDRQKFDDRICCMAW 286 (945)
Q Consensus 233 ~~~h~~~I~~l~fSpdg~~Lasgs~-Dg~I~IWD~~--~~~~--i~~~~~~~~V~~la~ 286 (945)
.. ......+.|+|+|++|+++.. ++.|.||+++ ++.. +..........++++
T Consensus 271 ~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 271 PT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred ec--cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 21 134557899999999998775 8899999874 3333 222333444555554
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.9e-15 Score=159.03 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=162.4
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeeccc
Q 002266 107 RVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRV 186 (945)
Q Consensus 107 ~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~ 186 (945)
.+++|+.+|..+++|+.||+++||+..+...+.....|...|.++.|+|||++|++.+.| ..+||++.++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 689999999999999999999999988887777888899999999999999999999999 899999999965554431
Q ss_pred CCCCCCCCCCceEEEEcCCC---C--EEEEEeCCCeEEEEECCCCcEE-----EeecCCCCCCeEEEEEcCCCCEEEEEE
Q 002266 187 APDIGSDPSSMNVLSWSPDG---E--TLAVPGLKNDVVMYDRDTAEKL-----FSLRGDHVQPICFLSWSPNGKYMATSS 256 (945)
Q Consensus 187 ~~~~~~~~~~i~~l~~spdg---~--~La~gs~dg~I~vwD~~t~~~~-----~~~~~~h~~~I~~l~fSpdg~~Lasgs 256 (945)
...+.....+.|+.++ . .++.....+.|+.|++..|..- .+.. .....|++++.|++|+++|.|+
T Consensus 226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEec
Confidence 1223345567888766 2 2333344567777777655431 1111 1345799999999999999999
Q ss_pred CCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCCCCC
Q 002266 257 LDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSP 316 (945)
Q Consensus 257 ~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~~~~ 316 (945)
.||.|.|++..+.+.+.. ..|...|+.+.|+|+.+++++.+.+....+..+........+
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~ 362 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLH 362 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeeccccccc
Confidence 999999999999888776 457889999999999999999999999999998876554433
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=3.3e-15 Score=158.80 Aligned_cols=233 Identities=16% Similarity=0.268 Sum_probs=174.8
Q ss_pred cccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc------cccccccccccceEEEEEecC-CCEEEEEEcC
Q 002266 10 EAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS------NLPKILRHHRDGVTALALSPN-STCLASGSID 82 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~------~~~~~l~~h~~~V~~la~spd-g~~Lasgs~D 82 (945)
+..-|||.+.|..++|+|-....+++|+.|.+|.||.+..+. .....+.+|...|--++|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 333458889999999999888888777899999999975443 234567899999999999994 4789999999
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCC-EEEEEEccCCCEEE
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP-VTGLAFDPNSEYLA 161 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~-V~~lafspdg~~La 161 (945)
.+|.+|++.+|+....+. |...|.++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.++.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999888877 9999999999999999999999999999999999999888778653 34456777888554
Q ss_pred EE---eCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEee-cC-C
Q 002266 162 SI---DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG-LKNDVVMYDRDTAEKLFSL-RG-D 235 (945)
Q Consensus 162 s~---s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs-~dg~I~vwD~~t~~~~~~~-~~-~ 235 (945)
+| ..+..+.+||...-..-..+... .....|.---|.++.+.++.++ .|+.|+.|.+....+...+ .. .
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~el-----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQEL-----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eccccccccceeccCcccccCcceeEEe-----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 44 24678999997654332222111 1224456667788877776544 5899999999876543222 11 1
Q ss_pred CCCCeEEEEEcCC
Q 002266 236 HVQPICFLSWSPN 248 (945)
Q Consensus 236 h~~~I~~l~fSpd 248 (945)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 2234455566553
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=8.8e-15 Score=149.91 Aligned_cols=261 Identities=17% Similarity=0.261 Sum_probs=194.4
Q ss_pred CCCeEEEEcCCCCc--cccccccccccceEEEEEec-CCCEEEEEEcC-------CcEEEEEcCCCe---------eeee
Q 002266 38 SETTISIHDPLLPS--NLPKILRHHRDGVTALALSP-NSTCLASGSID-------HSVKLYKFPGGE---------FQTN 98 (945)
Q Consensus 38 ~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~D-------g~V~iwdl~~g~---------~~~~ 98 (945)
.++.|.+.+..... .....+..|.+.|+.|+-+| +.+.|+++..+ ..+.||.++... ++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 46778776654433 34456778899999999999 55667766442 246799886432 2222
Q ss_pred cc-cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeE-EEEEe-----cCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 002266 99 IT-RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI-ARVLK-----GHKGPVTGLAFDP--NSEYLASIDSIGTV 169 (945)
Q Consensus 99 l~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~l~-----~h~~~V~~lafsp--dg~~Las~s~Dg~I 169 (945)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +|+.+++. .|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence 32 3445899999999999988875 78899999987764 33332 3556778889999 77777775 47999
Q ss_pred EEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcC
Q 002266 170 IYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG-ETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSP 247 (945)
Q Consensus 170 ~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg-~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSp 247 (945)
..||+++.+....+.. .|...+..+.|.|+- .+|++|+.||.|++||.+.-+ ++.++.+ |...|.++.|.|
T Consensus 196 ~~~D~RT~~~~~sI~d------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIED------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNP 268 (370)
T ss_pred EEEEccchhhhcchhh------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecC
Confidence 9999998877666543 456778899999965 467888999999999998655 6677776 999999999999
Q ss_pred -CCCEEEEEECCCeEEEEECCCC------------------------------eeeeeccCCCCeeEEEEecCCC-EEEE
Q 002266 248 -NGKYMATSSLDRQILIWDVGKK------------------------------LDIDRQKFDDRICCMAWKPIGN-ALAV 295 (945)
Q Consensus 248 -dg~~Lasgs~Dg~I~IWD~~~~------------------------------~~i~~~~~~~~V~~la~spdg~-~Las 295 (945)
...+|++|+.|..|.+|...+- .+.....|...|.+++|+.-.. .+|+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 4678899999999999965321 0111134678999999998666 5778
Q ss_pred EEcCCeEEEEec
Q 002266 296 IDVMGKYGVWES 307 (945)
Q Consensus 296 ~s~DG~I~iWd~ 307 (945)
-+.||.+.|=.+
T Consensus 349 LSYDGRviIs~V 360 (370)
T KOG1007|consen 349 LSYDGRVIISSV 360 (370)
T ss_pred eccCceEEeecC
Confidence 899999887544
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=154.72 Aligned_cols=247 Identities=19% Similarity=0.277 Sum_probs=182.0
Q ss_pred ccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccc-ccccceEEEEEecCCCEEEEEEcCCcEEEEE
Q 002266 11 AHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILR-HHRDGVTALALSPNSTCLASGSIDHSVKLYK 89 (945)
Q Consensus 11 aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~-~h~~~V~~la~spdg~~Lasgs~Dg~V~iwd 89 (945)
..+ +|.+.|+++.|..+++ |+.+ ..-|.|.+|++.+... ...+. .|...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 9 vLR-p~~~~v~s~~fqa~~r-L~sg-~~~G~V~~w~lqt~r~-~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 9 VLR-PHSSSVTSVLFQANER-LMSG-LSVGIVKMWVLQTERD-LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred Eec-cccchheehhhccchh-hhcc-cccceEEEEEeecCcc-chhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 344 7779999999998887 5555 4899999999988744 33444 67888999998887 5678889999999999
Q ss_pred cCCCeeeee--------------c---------------------------------------ccCCCCEEEEEEec-CC
Q 002266 90 FPGGEFQTN--------------I---------------------------------------TRFTLPIRVLAFNK-SG 115 (945)
Q Consensus 90 l~~g~~~~~--------------l---------------------------------------~~~~~~V~~l~fsp-dg 115 (945)
+.-+..+.. + ....+.+.+..+.. ++
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 754221100 0 00011233333322 22
Q ss_pred C--EEEEEECCCcEEEEEcCCCeE----------EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeee
Q 002266 116 S--MLAAAGDDEGIKLINTIDGSI----------ARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNL 183 (945)
Q Consensus 116 ~--~Lasgs~Dg~I~iwd~~~~~~----------~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~ 183 (945)
. ++++|..+|.|.+||+.++.. ......|..+|.++.|.+.-..=++++.+..+..|++........+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 467778899999999998733 3334569999999999986666677788888999988654211111
Q ss_pred cccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 002266 184 KRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILI 263 (945)
Q Consensus 184 ~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~I 263 (945)
.. ........+..+..-||++.+|+++.|+.|+||..++..++..+.- |...|.+++|+|+..++|+++.|++|.+
T Consensus 244 ~~---e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 244 RK---EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cc---eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hhcceeEEEeCCCCchhhhccCCceEEe
Confidence 10 0011224567789999999999999999999999999999988887 9999999999999999999999999999
Q ss_pred EEC
Q 002266 264 WDV 266 (945)
Q Consensus 264 WD~ 266 (945)
|++
T Consensus 320 WkL 322 (323)
T KOG0322|consen 320 WKL 322 (323)
T ss_pred eec
Confidence 986
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-14 Score=168.56 Aligned_cols=233 Identities=19% Similarity=0.178 Sum_probs=165.3
Q ss_pred CCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCC
Q 002266 39 ETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG 115 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg 115 (945)
+..|+|||.... . ...+..|...+.+++|+|||+.|+.++.+ ..|++||+.+++... +.........++|+|||
T Consensus 183 ~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCC
Confidence 468999997543 2 45566778889999999999999987654 469999998875432 22233345578999999
Q ss_pred CEEEEEE-CCCcEEE--EEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCee-eeeecccCCCC
Q 002266 116 SMLAAAG-DDEGIKL--INTIDGSIARVLKGHKGPVTGLAFDPNSEYLASID-SIGTVIYWELQSGRE-LHNLKRVAPDI 190 (945)
Q Consensus 116 ~~Lasgs-~Dg~I~i--wd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s-~Dg~I~iwDl~t~~~-i~~~~~~~~~~ 190 (945)
+.|++++ .+|.+.| ||+.++. ...+..+...+.++.|+|+|+.|+.++ .+|...||++..... ...+ .
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~----- 332 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G----- 332 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-----
Confidence 9988875 5776554 5665555 445666777788999999999776554 578888888754321 1211 1
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CC
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV--GK 268 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~--~~ 268 (945)
+.. ..+.|+|+|++|++.+.+ .+.+||+.+++....... + ....+.|+|+|++|++++.++.+.+|.+ .+
T Consensus 333 --~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 333 --GRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSST-F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred --CCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 111 347899999999888765 466799988875433222 2 2356789999999999999998888875 24
Q ss_pred Ceeeee-ccCCCCeeEEEEecC
Q 002266 269 KLDIDR-QKFDDRICCMAWKPI 289 (945)
Q Consensus 269 ~~~i~~-~~~~~~V~~la~spd 289 (945)
+..+.. ..+.+.+...+|+|-
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEccCCCCCCCCcccCCC
Confidence 555444 345677889999984
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=4.5e-15 Score=165.48 Aligned_cols=231 Identities=16% Similarity=0.316 Sum_probs=184.5
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK 142 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~ 142 (945)
.|..++|.|||..|+.+.. ..+.+||...|.....+.+|...|.+++|+.||+.+|+|+.|..|.+|...-...+ . -
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-Y 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-e
Confidence 7999999999998887654 57999999999999999999999999999999999999999999999986433322 2 2
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEE
Q 002266 143 GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 143 ~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD 222 (945)
.|.+.|.|+.|+|-...|++++-. ..-+|.......... .....+.+++|..||++|+.|-.+|+|.+-+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~---------kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH---------KSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh---------hhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 599999999999999999988763 467887654332211 1125678899999999999999999999986
Q ss_pred CCCCcE-EEeecCCCCCCeEEEEEcCCC-----CEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEE
Q 002266 223 RDTAEK-LFSLRGDHVQPICFLSWSPNG-----KYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVI 296 (945)
Q Consensus 223 ~~t~~~-~~~~~~~h~~~I~~l~fSpdg-----~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~ 296 (945)
-...+. ...-+++..++|.+++|+|.. ..+++.....++.++.+.....-......-...|+.+.++|.++..|
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEc
Confidence 543322 233345577899999999952 47888888888888887654443344455567899999999999999
Q ss_pred EcCCeEEEEe
Q 002266 297 DVMGKYGVWE 306 (945)
Q Consensus 297 s~DG~I~iWd 306 (945)
+.|+.+.+|.
T Consensus 241 Gsdk~L~~fT 250 (1081)
T KOG1538|consen 241 GSDKQLSLFT 250 (1081)
T ss_pred cCCCceEEEe
Confidence 9999999985
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1e-13 Score=146.97 Aligned_cols=236 Identities=18% Similarity=0.256 Sum_probs=180.6
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCC--cEEEEEcCCCeEEE
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDE--GIKLINTIDGSIAR 139 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg--~I~iwd~~~~~~~~ 139 (945)
..+..+.|..+...|..|+.|| .++|....-............|..+-|+ ..++|..+.+. .++++++..+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 4567777999999999999988 6788876543322222222334444554 45666665543 48999998888777
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC--CCe
Q 002266 140 VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL--KND 217 (945)
Q Consensus 140 ~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~--dg~ 217 (945)
.+. ....|.++.++. +.|+++-.+ .|+|||+++.+.++++.... .+...+..+++++.+.+++..+. .|.
T Consensus 83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~----~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTP----PNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccC----CCccceEeeccCCCCceEEecCCCCCce
Confidence 665 457899999874 456666554 49999999999998886542 23344555555556779998653 689
Q ss_pred EEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeeeeccC---CCCeeEEEEecCCCEE
Q 002266 218 VVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQ-ILIWDVGKKLDIDRQKF---DDRICCMAWKPIGNAL 293 (945)
Q Consensus 218 I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~-I~IWD~~~~~~i~~~~~---~~~V~~la~spdg~~L 293 (945)
|.+||..+.+++..+.. |.+++-+++|+++|.+|||++..|+ |+||.+.+++.+..+.- ...|.+++|+|++++|
T Consensus 155 V~l~d~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEEEcccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 99999999999999985 9999999999999999999999886 79999999988877443 3568999999999999
Q ss_pred EEEEcCCeEEEEecCC
Q 002266 294 AVIDVMGKYGVWESVV 309 (945)
Q Consensus 294 as~s~DG~I~iWd~~~ 309 (945)
++.+..++|++|.+..
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998864
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=2.6e-14 Score=148.79 Aligned_cols=230 Identities=17% Similarity=0.226 Sum_probs=176.6
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc--cccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC-
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPS--NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG- 93 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g- 93 (945)
..+|+|.+|++|+..++++. ....|.||...... ....++..|...|++|+|+|..+.|++|+.|..-++|....+
T Consensus 10 ~~pitchAwn~drt~iAv~~-~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSP-NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEecc-CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 47899999999999999987 78899999865543 456788899999999999999999999999999999998433
Q ss_pred --eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEE----EEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002266 94 --EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIA----RVLKGHKGPVTGLAFDPNSEYLASIDSIG 167 (945)
Q Consensus 94 --~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~----~~l~~h~~~V~~lafspdg~~Las~s~Dg 167 (945)
+....+.++...++++.|+|.++.||+|+....|.||-++...-- +.-+.+...|.++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 234456778999999999999999999999999999887654321 12345678899999999999999999999
Q ss_pred cEEEEEccCCeee-----------eeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEeecCC
Q 002266 168 TVIYWELQSGREL-----------HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGD 235 (945)
Q Consensus 168 ~I~iwDl~t~~~i-----------~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~ 235 (945)
.++|+..--...- ..|...........+.+..+.|+|+|..|+..+.|..+.+-|..... .+..+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 9999974211000 00001111122345778999999999999999999999999987664 33444332
Q ss_pred CCCCeEEEEEcCC
Q 002266 236 HVQPICFLSWSPN 248 (945)
Q Consensus 236 h~~~I~~l~fSpd 248 (945)
+ .+..++.|-.+
T Consensus 249 ~-lP~ls~~~ise 260 (361)
T KOG1523|consen 249 Q-LPLLSVSWISE 260 (361)
T ss_pred c-CCceeeEeecC
Confidence 3 66777777544
No 190
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.9e-14 Score=155.98 Aligned_cols=285 Identities=17% Similarity=0.208 Sum_probs=217.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccc--cceEEEEEecCCCEEEEEEcCCcEEEEEcCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHR--DGVTALALSPNSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~--~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~ 92 (945)
+|.+.-+.|..+|||+|++++|..--.|++||+..-. ..+.-|. ..|.-.-.+.|-..++.-..|.+|.+..-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS---LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS---LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce---eeeeecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 5667788999999999999988788899999986542 2233332 334444445555555555677777776532
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
|.... .+.+..-++++++.-..-|++++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|..|
T Consensus 125 G~hy~--~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 125 GRHYR--TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred Ceeee--eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 22111 1223345667777544556666667789999999999998888888999999999999999999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCC-----CCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC
Q 002266 173 ELQSGRELHNLKRVAPDIGSDP-----SSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP 247 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~-----~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp 247 (945)
|.+....+..+..... +..++ ..|+++.|+.+|-.+++|+..|.|.|||+++.+++..-......+|..+.|-+
T Consensus 203 DpR~ksrv~~l~~~~~-v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASS-VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred cchhhhhheeeecccc-cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 9998877666654322 22222 34899999999999999999999999999999988776655667999999987
Q ss_pred C--CCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 248 N--GKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 248 d--g~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
. +..|++.. ...++|||-.+++....+.....+..+|+-|++-+++++..++.+..|=+
T Consensus 282 ~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 282 TDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 5 45566554 57899999999999999888888999999999999999988887776643
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=6.2e-15 Score=163.66 Aligned_cols=258 Identities=21% Similarity=0.262 Sum_probs=185.2
Q ss_pred CCCCEEEEE-EcCCCeEEEEcCCCCcccccccc---ccccceEEEEEec-CCCEEEEEEcCCcEEEEEcCCC-------e
Q 002266 27 QQAHHLVTA-SSSETTISIHDPLLPSNLPKILR---HHRDGVTALALSP-NSTCLASGSIDHSVKLYKFPGG-------E 94 (945)
Q Consensus 27 pdg~~L~t~-g~~dg~V~IWd~~~~~~~~~~l~---~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~~g-------~ 94 (945)
.+..++++- .+..|.|.||++..++.++.... .....|+.+.|.| |...|++++.||.|++|.+..+ .
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 345555542 22679999999987766554322 1356799999999 7889999999999999998754 2
Q ss_pred eeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
....++.|...|+++.|+| -...|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+++.+.||+|++|.
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 3456788999999999999 457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCee-eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC----eEEEEECCCCc--EEEeecCCCCCCeEEEEEc
Q 002266 174 LQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN----DVVMYDRDTAE--KLFSLRGDHVQPICFLSWS 246 (945)
Q Consensus 174 l~t~~~-i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg----~I~vwD~~t~~--~~~~~~~~h~~~I~~l~fS 246 (945)
.+++.. +..-+... ...--.+.|.-+|+++++.+.|. .|.+||..+.. ++.+..-.-.-.+.--.+.
T Consensus 749 Prs~e~pv~Eg~gpv------gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD 822 (1012)
T KOG1445|consen 749 PRSREQPVYEGKGPV------GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYD 822 (1012)
T ss_pred CCCCCCccccCCCCc------cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcccccccc
Confidence 887643 22222111 12235688988999999887654 58888876532 3333221111112222345
Q ss_pred CCC-CEEEEEECCCeEEEEECCCCeeeee--ccC--CCCeeEEEEecCC
Q 002266 247 PNG-KYMATSSLDRQILIWDVGKKLDIDR--QKF--DDRICCMAWKPIG 290 (945)
Q Consensus 247 pdg-~~Lasgs~Dg~I~IWD~~~~~~i~~--~~~--~~~V~~la~spdg 290 (945)
+|. -++++|-.|..|.+|.+-....... ..| ...-.+++|.+..
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeeccc
Confidence 554 4667888899999999865443322 222 2333567776654
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3e-14 Score=166.66 Aligned_cols=282 Identities=15% Similarity=0.142 Sum_probs=200.6
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccc---cccceEEEEEec--CCCEEEEEEcCCcEEEEEcC-C-
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRH---HRDGVTALALSP--NSTCLASGSIDHSVKLYKFP-G- 92 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~---h~~~V~~la~sp--dg~~Lasgs~Dg~V~iwdl~-~- 92 (945)
-..+.|+|-...++++. ..-.|+|||.+.+.. ..-+.. ....|+.+.+-. |..+|++|+.||.|+||+-- +
T Consensus 1067 pk~~~~hpf~p~i~~ad-~r~~i~vwd~e~~~~-l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAAD-DRERIRVWDWEKGRL-LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CceeeecCCCceeEEcC-CcceEEEEecccCce-eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 45577999999999986 567999999876633 222222 245788998876 55789999999999999732 2
Q ss_pred ---Ceeeeeccc-------CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe-cCCCCEEEEEEcc-CCCEE
Q 002266 93 ---GEFQTNITR-------FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK-GHKGPVTGLAFDP-NSEYL 160 (945)
Q Consensus 93 ---g~~~~~l~~-------~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~-~h~~~V~~lafsp-dg~~L 160 (945)
.+.+..... ..+.-.-+.|.....+|+++|+-..|+|||.....++..+. +....|+++.-+. .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 122222211 11112446787777778888888899999998887776654 3445677776544 46899
Q ss_pred EEEeCCCcEEEEEccCCee---eeeecccCCCCCCCCCCceEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEE--eecC
Q 002266 161 ASIDSIGTVIYWELQSGRE---LHNLKRVAPDIGSDPSSMNVLSWSPDGET-LAVPGLKNDVVMYDRDTAEKLF--SLRG 234 (945)
Q Consensus 161 as~s~Dg~I~iwDl~t~~~---i~~~~~~~~~~~~~~~~i~~l~~spdg~~-La~gs~dg~I~vwD~~t~~~~~--~~~~ 234 (945)
++|..||.|++||.+.... +.....+ ....+|..+.+.+.|-. |++|+.+|.|++||++...... .+..
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h-----~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREH-----NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeeccc-----CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 9999999999999987543 2222211 11223888899886654 9999999999999999742221 1111
Q ss_pred CC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc-------CCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 235 DH--VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK-------FDDRICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 235 ~h--~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~-------~~~~V~~la~spdg~~Las~s~DG~I~iW 305 (945)
.. .+..+++..+++...+|+|+. +.|.||++.....-.... -...+.|++|||..-.||+|..|..|.||
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 01 235999999999999999998 999999987654432211 13567999999999999999999999999
Q ss_pred ecCC
Q 002266 306 ESVV 309 (945)
Q Consensus 306 d~~~ 309 (945)
...-
T Consensus 1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred ecCC
Confidence 7653
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1e-12 Score=139.44 Aligned_cols=277 Identities=18% Similarity=0.253 Sum_probs=200.3
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC--CcEEEEEcCCCe
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID--HSVKLYKFPGGE 94 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D--g~V~iwdl~~g~ 94 (945)
...+..+.|+.+...|.+++ .+| .++|....-.. ......+.+.-+..--...++|..+.+ ..++++++..+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs-~~G-yk~~~~~~~~k---~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGS-KDG-YKIFSCSPFEK---CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccC-CCc-eeEEecCchHH---hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence 35677888998888777764 665 67777654322 222222333333333334577766654 348999988887
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec---CCCCEEEEEEccCCCEEEEE--eCCCcE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG---HKGPVTGLAFDPNSEYLASI--DSIGTV 169 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~---h~~~V~~lafspdg~~Las~--s~Dg~I 169 (945)
.+..+. +..+|.++.++. +.|+++-.+. |+|||+.+.+.+.++.. +...+..+++++.+.+|+.- ...|.|
T Consensus 80 ~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 777665 677899999875 4566665554 99999999998887753 45567777777777788864 346899
Q ss_pred EEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEeecCC-CCCCeEEEEEcC
Q 002266 170 IYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND-VVMYDRDTAEKLFSLRGD-HVQPICFLSWSP 247 (945)
Q Consensus 170 ~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~-I~vwD~~t~~~~~~~~~~-h~~~I~~l~fSp 247 (945)
.+||+.+-+.+..+. .|.+.+.+++|+++|.+||+++..|+ |+||.+.+++.+++|..+ ....|.+++|+|
T Consensus 156 ~l~d~~nl~~v~~I~-------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 156 VLFDTINLQPVNTIN-------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred EEEEcccceeeeEEE-------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 999999888877765 56788999999999999999999886 799999999999999753 345789999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeee--------------------e-----------------e--ccCCC--CeeEEEE
Q 002266 248 NGKYMATSSLDRQILIWDVGKKLDI--------------------D-----------------R--QKFDD--RICCMAW 286 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~~~~~~i--------------------~-----------------~--~~~~~--~V~~la~ 286 (945)
++.+|++.+..++|.||.++....- . . ..... .++.+.=
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence 9999999999999999987542110 0 0 00011 2333333
Q ss_pred ecCCCEEEEEEcCCeEEEEecCC
Q 002266 287 KPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 287 spdg~~Las~s~DG~I~iWd~~~ 309 (945)
.+...++.+++.||.++.|.+..
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCC
Confidence 34677899999999999998764
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.2e-15 Score=160.15 Aligned_cols=201 Identities=19% Similarity=0.274 Sum_probs=162.2
Q ss_pred EEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec-
Q 002266 65 TALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG- 143 (945)
Q Consensus 65 ~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~- 143 (945)
.+++|+.+|..|++|+.||+++||++++...+.....|...|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999999988888888899999999999999999999999 899999999976665542
Q ss_pred -CCCCEEEEEEccCC---CE--EEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe
Q 002266 144 -HKGPVTGLAFDPNS---EY--LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND 217 (945)
Q Consensus 144 -h~~~V~~lafspdg---~~--Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~ 217 (945)
.......+.|+.++ .+ ++.....+.|+.|++.....-..+.. .........|++++.+++|++++.|+.+|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~--~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL--RKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch--hhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 23446677888776 32 23334456778777654322111111 111123357899999999999999999999
Q ss_pred EEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002266 218 VVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 218 I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~ 268 (945)
|.|++..+.+.++.++..|...|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999888999999999999999999999999888887643
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=9.3e-15 Score=160.07 Aligned_cols=207 Identities=17% Similarity=0.284 Sum_probs=167.0
Q ss_pred EEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEE
Q 002266 31 HLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLA 110 (945)
Q Consensus 31 ~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~ 110 (945)
.++.++ .||.+.|.+-. ..+...+..|.+.|.+-.|+|||.-|+++++||.|++|+ ++|-+...+.....+|+|++
T Consensus 77 ~~~i~s-~DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 77 TLLICS-NDGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred eEEEEc-CCceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 455554 89999988732 356778889999999999999999999999999999998 56766677777888999999
Q ss_pred EecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCC
Q 002266 111 FNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 111 fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
|.|+.+.++.+. .+.+.|=.+.....+..++.|.+-|.++.|++..+++++|+.|-..+|||-. |..+..-
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S------- 223 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS------- 223 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-------
Confidence 999888777654 4457777777777777899999999999999999999999999999999964 3333322
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIW 264 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IW 264 (945)
..|..+|++++|.|+ +.+++++. +.++ +.....+.|..++||+||..+++|+..|.+.+=
T Consensus 224 ~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred Chhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 246688999999999 66777652 2333 444466889999999999999999999987653
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=1.4e-14 Score=148.51 Aligned_cols=225 Identities=19% Similarity=0.281 Sum_probs=169.1
Q ss_pred cCCcEEEEEcCCCe--ee-eecccCCCCEEEEEEecC-CCEEEEEECC-------CcEEEEEcCCCe---------EEEE
Q 002266 81 IDHSVKLYKFPGGE--FQ-TNITRFTLPIRVLAFNKS-GSMLAAAGDD-------EGIKLINTIDGS---------IARV 140 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~--~~-~~l~~~~~~V~~l~fspd-g~~Lasgs~D-------g~I~iwd~~~~~---------~~~~ 140 (945)
.|+.|.+.++..+. .. ..+..+.+.|+.++-+|- .+.|+++..+ ..+.||.+.... ++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 35778887776543 22 345567889999999994 4556665432 247789886431 2233
Q ss_pred Ee-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeee-eeecccCCCCCCCCCCceEEEEcC--CCCEEEEEeCCC
Q 002266 141 LK-GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGREL-HNLKRVAPDIGSDPSSMNVLSWSP--DGETLAVPGLKN 216 (945)
Q Consensus 141 l~-~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i-~~~~~~~~~~~~~~~~i~~l~~sp--dg~~La~gs~dg 216 (945)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+..+ ..+.. +....+....++-+|+| +|+.+++.+ ++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s--s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS--SESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc--cccccccceecccccCCCCccceEEEeC-CC
Confidence 33 4557899999999999988776 789999999887653 33322 11122345567789999 888888864 99
Q ss_pred eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCee-ee-eccCCCCeeEEEEecC-CCE
Q 002266 217 DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK-YMATSSLDRQILIWDVGKKLD-ID-RQKFDDRICCMAWKPI-GNA 292 (945)
Q Consensus 217 ~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~-~Lasgs~Dg~I~IWD~~~~~~-i~-~~~~~~~V~~la~spd-g~~ 292 (945)
++..||+++.++...+...|...|..+.|.|+-. +|++|+.||.|+|||.+..+. +. ...|..-|+++.|+|. .++
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 9999999999999999888999999999999865 688999999999999976443 33 3678889999999995 457
Q ss_pred EEEEEcCCeEEEEecCC
Q 002266 293 LAVIDVMGKYGVWESVV 309 (945)
Q Consensus 293 Las~s~DG~I~iWd~~~ 309 (945)
|.+++.|..|.+|....
T Consensus 274 iLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEecCCCceeEEEeccc
Confidence 88899999999997654
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.9e-13 Score=144.17 Aligned_cols=279 Identities=17% Similarity=0.268 Sum_probs=191.0
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccc-ccccceEEEEEecC-CCEEEEEEcCCcEEEEEcCCC--
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILR-HHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGG-- 93 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~-~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~~g-- 93 (945)
-.+..++|++.--.+++++ .|-.|++|+-.. ..+..++ .....|+|++|-|. +.-|+.|+..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~-nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVAT-NDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhc-cCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 4577889999766677776 888999999655 2333333 34678999999994 46788887755 999986421
Q ss_pred --eee--------eecc-cCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEE
Q 002266 94 --EFQ--------TNIT-RFTLPIRVLAFNKSGSMLAAAGD-DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLA 161 (945)
Q Consensus 94 --~~~--------~~l~-~~~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~La 161 (945)
..+ ..+. ....+|+++.|.+||..+++++. +..|.|||..++..+.......+.+.-+.|+|||.+|+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 110 0111 12358999999999999999875 56799999999887655545567889999999999999
Q ss_pred EEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cE-
Q 002266 162 SIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA------------EK- 228 (945)
Q Consensus 162 s~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~------------~~- 228 (945)
+++.|+..++|.....-...... ...+.+...+|+|+|++|+..+ .+.-++|.+.-. +.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~-------lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWI-------LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred Eecccceeeeehhcccceeccee-------ccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccceee
Confidence 99999999999654332111111 1124788899999999887765 333444443210 00
Q ss_pred --EEeec-----C---CCCCCeEEEEEcCCCCEEEEEECCC--------eEEEEECCCCeeeeec--c--CCCCeeEEEE
Q 002266 229 --LFSLR-----G---DHVQPICFLSWSPNGKYMATSSLDR--------QILIWDVGKKLDIDRQ--K--FDDRICCMAW 286 (945)
Q Consensus 229 --~~~~~-----~---~h~~~I~~l~fSpdg~~Lasgs~Dg--------~I~IWD~~~~~~i~~~--~--~~~~V~~la~ 286 (945)
+..+. . --.+.+.+++|.|.|.|||+.-..+ .|.+||....-.+... + .......++|
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF 406 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISF 406 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEe
Confidence 00010 0 0145788999999999999876543 4778888765554442 1 1233566777
Q ss_pred ec---CCCEEEEEEcCCeEEEEecC
Q 002266 287 KP---IGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 287 sp---dg~~Las~s~DG~I~iWd~~ 308 (945)
+| ++.+|..+=..|.+.-|.+.
T Consensus 407 ~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 407 GPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eecccCCcEEEEEeccCceEeeeeE
Confidence 77 56678888888998888764
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=147.13 Aligned_cols=251 Identities=19% Similarity=0.222 Sum_probs=188.9
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecc-cCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNIT-RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT 132 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 132 (945)
...+++|.+.|+++.|-.+++ |++|..-|.|.+|++.+......+. .+...|+.+...|+ ..+.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 445678999999999988764 8899999999999999887777776 56778888888887 56788888999999988
Q ss_pred CCCeEEEE--------------E---------------------------------------ecCCCCEEEEEEcc-CCC
Q 002266 133 IDGSIARV--------------L---------------------------------------KGHKGPVTGLAFDP-NSE 158 (945)
Q Consensus 133 ~~~~~~~~--------------l---------------------------------------~~h~~~V~~lafsp-dg~ 158 (945)
.-+..+.. + .+..+.+.|..+.. .+.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 54221100 0 00123455555433 233
Q ss_pred --EEEEEeCCCcEEEEEccCCeeeeeecccC---CCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEE--
Q 002266 159 --YLASIDSIGTVIYWELQSGRELHNLKRVA---PDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA--EKL-- 229 (945)
Q Consensus 159 --~Las~s~Dg~I~iwDl~t~~~i~~~~~~~---~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~--~~~-- 229 (945)
+|++|-.+|.|.+||+.++..+..++... .....+..++.++.+.+.-..=+.|+.+..+..|.+... ...
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 46778889999999999986655554322 223457788999999876555567777888888887643 211
Q ss_pred EeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec-cCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 230 FSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ-KFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 230 ~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~-~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
..+.. ..-.|..+..-||++.+|+++.|+.|+||..++...+... -|...|.+++|+|+.+.+|+++.|++|.+|++
T Consensus 245 ~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 11111 2346888899999999999999999999999999998884 47889999999999999999999999999986
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=5.1e-14 Score=163.77 Aligned_cols=245 Identities=18% Similarity=0.182 Sum_probs=182.3
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc-c----ccccccccceEEEEEecCC--CEEEEEEcCCcEEEEE
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNL-P----KILRHHRDGVTALALSPNS--TCLASGSIDHSVKLYK 89 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~-~----~~l~~h~~~V~~la~spdg--~~Lasgs~Dg~V~iwd 89 (945)
...|.|++|+|....++++|..+|.|.+||+...... . .....|..+|+.+.|..+. .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4789999999999999999889999999998766432 1 2234688999999998744 4489999999999998
Q ss_pred cCCCeee------eecc------cCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCe--------EEEEEecCCCCE
Q 002266 90 FPGGEFQ------TNIT------RFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGS--------IARVLKGHKGPV 148 (945)
Q Consensus 90 l~~g~~~------~~l~------~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~--------~~~~l~~h~~~V 148 (945)
++.-... .... .....++++.|.+ +-..+++|++.|.|..-+....+ ....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7543211 1111 1234688899988 55779999999988874433221 133556788999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcc-CCeeeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 002266 149 TGLAFDPNSEYLASIDSIGTVIYWELQ-SGRELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTA 226 (945)
Q Consensus 149 ~~lafspdg~~Las~s~Dg~I~iwDl~-t~~~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~ 226 (945)
+++.++|=+..++.++.|.+|+||... ...++..+. .+...++.++||| ....|+++..+|.|.+||+...
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhh-------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999977666555559999999876 334433332 2234588999999 4567888888999999998643
Q ss_pred --cEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002266 227 --EKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 227 --~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.++.+... +....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 34555544 3567788889999999999999999999999643
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=1.3e-13 Score=163.94 Aligned_cols=290 Identities=17% Similarity=0.159 Sum_probs=200.0
Q ss_pred cccccCCCCCEEEEEECCCC-CEEEEEEcCCCeEEEEcCCCCccc------cccccccccceEEEEEecCCCEEEEEEcC
Q 002266 10 EAHKCGNAASFCSILWDQQA-HHLVTASSSETTISIHDPLLPSNL------PKILRHHRDGVTALALSPNSTCLASGSID 82 (945)
Q Consensus 10 ~aH~~gh~~~V~svafspdg-~~L~t~g~~dg~V~IWd~~~~~~~------~~~l~~h~~~V~~la~spdg~~Lasgs~D 82 (945)
-+|-.+|...|..++.++.. .++++++ .||+|++|+...-... ..++......+.++.+.+.++.+|+++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS-~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGS-DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEec-CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 35555688889999988766 7777765 9999999996532211 11222246789999999999999999999
Q ss_pred CcEEEEEcCCC--e-----eeeecc--cCCCCEEEEEEec-CCC-EEEEEECCCcEEEEEcCCCeEEEEEe--cCCCCEE
Q 002266 83 HSVKLYKFPGG--E-----FQTNIT--RFTLPIRVLAFNK-SGS-MLAAAGDDEGIKLINTIDGSIARVLK--GHKGPVT 149 (945)
Q Consensus 83 g~V~iwdl~~g--~-----~~~~l~--~~~~~V~~l~fsp-dg~-~Lasgs~Dg~I~iwd~~~~~~~~~l~--~h~~~V~ 149 (945)
|.|.+.++... . ...... ....-|..-+|.. .+. .++.+..-+.|..||++......+++ ...+.|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999998652 1 111111 1222233444443 333 78888999999999998766554443 2348899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC---CCEEEEEe--CCCeEEEEECC
Q 002266 150 GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD---GETLAVPG--LKNDVVMYDRD 224 (945)
Q Consensus 150 ~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd---g~~La~gs--~dg~I~vwD~~ 224 (945)
+++.+|.+.+++.|+..|.+.+||++-+..+..+... +..+++.++.+|- ....++++ ..+.|.+|++.
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCc------ccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 9999999999999999999999999988887776542 2356677777762 24555444 46789999999
Q ss_pred CCcEEEeecCC------------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeee--------------
Q 002266 225 TAEKLFSLRGD------------------HVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDI-------------- 272 (945)
Q Consensus 225 t~~~~~~~~~~------------------h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i-------------- 272 (945)
++.+...+... +.-.....++..-+.++.+|+.|..|+.||.......
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 88765555431 0111122333334568899999999999997432110
Q ss_pred -------------------------------------------eeccCCCCeeEEEEecCC-CEEEEEEcCCeEEEEe
Q 002266 273 -------------------------------------------DRQKFDDRICCMAWKPIG-NALAVIDVMGKYGVWE 306 (945)
Q Consensus 273 -------------------------------------------~~~~~~~~V~~la~spdg-~~Las~s~DG~I~iWd 306 (945)
....|...|+++++.... .+|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001244678888876654 4889999999999994
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=2.1e-15 Score=172.26 Aligned_cols=246 Identities=19% Similarity=0.292 Sum_probs=195.3
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
+.+.+|...|+|+.|...|.++++|+.|..|+||.+.++.+...+.+|.+.|+.++.+.+..++++++.|..|++|.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 135 GSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 135 ~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
+.++..+.+|++.|++|+|+|-. +.+.||++++||.+-. .+. + ...+........+.++.|...+..+++++.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~-y-~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRI-Y-VPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccc-c-CCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999964 7788999999998711 111 1 111112223355667888888889999999
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCE
Q 002266 215 KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNA 292 (945)
Q Consensus 215 dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~ 292 (945)
++.-..|....... +...+.-+.++.+ ..+.+++-.+-.+.+|++.++...+. ..|...+..|.++|-...
T Consensus 337 d~ea~n~e~~~l~~-------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW-------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred CcccccchhhHhhh-------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 99888776642110 1112222222222 24667777788999999999988776 678889999999997654
Q ss_pred -EEEEEcCCeEEEEecCCCCCCC
Q 002266 293 -LAVIDVMGKYGVWESVVPSSMK 314 (945)
Q Consensus 293 -Las~s~DG~I~iWd~~~~~~~~ 314 (945)
..+++.||.+.|||+..+..++
T Consensus 410 i~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred hhhhccCCCceEeeecccCCcce
Confidence 5568999999999987766543
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-13 Score=161.47 Aligned_cols=217 Identities=18% Similarity=0.217 Sum_probs=152.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcC--CCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE-cCCcEEEE--E
Q 002266 15 GNAASFCSILWDQQAHHLVTASSS--ETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS-IDHSVKLY--K 89 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~--dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs-~Dg~V~iw--d 89 (945)
.|...|.+.+|||||+.|++++.. +..|++||+.++.. ..+....+...+++|+|||+.|++++ .+|.+.|| +
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 455779999999999999987633 34799999876532 11222223345789999999888765 67766555 6
Q ss_pred cCCCeeeeecccCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCC-eEEEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002266 90 FPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAG-DDEGIKLINTIDG-SIARVLKGHKGPVTGLAFDPNSEYLASIDSIG 167 (945)
Q Consensus 90 l~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~-~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg 167 (945)
+.++. ...+..+...+....|+|||+.|+.++ .++...||++... .....+ .+.. .++.|+|+|++|++++.++
T Consensus 279 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~ 354 (429)
T PRK01742 279 ANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN 354 (429)
T ss_pred CCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC
Confidence 55555 345566667788999999999887766 4677788876432 222223 3433 4678999999998887755
Q ss_pred cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcEEEeecCCCCCCeEEEEE
Q 002266 168 TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDR--DTAEKLFSLRGDHVQPICFLSW 245 (945)
Q Consensus 168 ~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~--~t~~~~~~~~~~h~~~I~~l~f 245 (945)
+.+||+.++......... ....+.|+|+|++|++++.++.+.+|.+ .++..+..+.. |.+.+..++|
T Consensus 355 -i~~~Dl~~g~~~~lt~~~---------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~-~~g~~~~p~w 423 (429)
T PRK01742 355 -VVKQDLTSGSTEVLSSTF---------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG-SDGQVKFPAW 423 (429)
T ss_pred -EEEEECCCCCeEEecCCC---------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC-CCCCCCCccc
Confidence 666999887654222110 1234789999999999998998887775 35777777765 7778889999
Q ss_pred cCC
Q 002266 246 SPN 248 (945)
Q Consensus 246 Spd 248 (945)
+|-
T Consensus 424 sp~ 426 (429)
T PRK01742 424 SPY 426 (429)
T ss_pred CCC
Confidence 984
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=6.5e-15 Score=159.42 Aligned_cols=235 Identities=18% Similarity=0.332 Sum_probs=198.4
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL 141 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l 141 (945)
-..+.+.++.+|++|+.|+..|.|-.+|+.++.+...+. ....|.++.|..+..++|++ ....++|||- .|..++.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeeh
Confidence 345788999999999999999999999999998877665 45679999999998888887 4567999995 56667777
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEE
Q 002266 142 KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMY 221 (945)
Q Consensus 142 ~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vw 221 (945)
+.| ..|..+.|-|..-+|++++..|.+..-|+.+|+.+..+... .+.+..++-.|-+-.+-+|...|+|.+|
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-------~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-------AGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-------CCccchhhcCCccceEEEcCCCceEEec
Confidence 755 67899999999999999999999999999999988776532 3556678888988899999999999999
Q ss_pred ECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCe
Q 002266 222 DRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGK 301 (945)
Q Consensus 222 D~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~ 301 (945)
.....+++..+.. |.++|.++++.++|+|+||++.|..++|||++....+.......+...+++|..| +++++....
T Consensus 279 SP~skePLvKiLc-H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 279 SPNSKEPLVKILC-HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDH 355 (545)
T ss_pred CCCCcchHHHHHh-cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCe
Confidence 9999998888877 9999999999999999999999999999999988766665556778889998766 444555667
Q ss_pred EEEEecCCC
Q 002266 302 YGVWESVVP 310 (945)
Q Consensus 302 I~iWd~~~~ 310 (945)
|.||.....
T Consensus 356 v~iw~d~~~ 364 (545)
T KOG1272|consen 356 VQIWKDALK 364 (545)
T ss_pred eeeehhhhc
Confidence 999976554
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.7e-14 Score=146.44 Aligned_cols=192 Identities=18% Similarity=0.296 Sum_probs=156.8
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCC
Q 002266 116 SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP--NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193 (945)
Q Consensus 116 ~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp--dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~ 193 (945)
..+|++...|.|++||..++..+..++++...+..+.|.. ....+.+|+.||+|++||+++......+.... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~----~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ----QS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC----CC
Confidence 5789999999999999999999999999999999999987 45679999999999999999876554443211 11
Q ss_pred CCCceEEEEcCCCCEEEEEeC----CCeEEEEECCCCcE-EEeecCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC
Q 002266 194 PSSMNVLSWSPDGETLAVPGL----KNDVVMYDRDTAEK-LFSLRGDHVQPICFLSWSP-NGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 194 ~~~i~~l~~spdg~~La~gs~----dg~I~vwD~~t~~~-~~~~~~~h~~~I~~l~fSp-dg~~Lasgs~Dg~I~IWD~~ 267 (945)
..+..+++..-.++.+++|+. +-.|.+||.+.++. +..+...|...|++++|+| +.++|++|+.||.|.|||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 234566666657788888764 56799999998887 6777777999999999999 56899999999999999996
Q ss_pred CC----eeeeeccCCCCeeEEEEecCC-CEEEEEEcCCeEEEEecCCCC
Q 002266 268 KK----LDIDRQKFDDRICCMAWKPIG-NALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 268 ~~----~~i~~~~~~~~V~~la~spdg-~~Las~s~DG~I~iWd~~~~~ 311 (945)
.. .++..+.+...|.++.|..++ +.|.+-+..+...+|++..++
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 54 234457778889999999877 468888999999999987654
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=152.35 Aligned_cols=235 Identities=18% Similarity=0.192 Sum_probs=163.0
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc---CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI---DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~---Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~ 116 (945)
..|++||.... ....+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.. .+......+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~--~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCC--CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCC
Confidence 36888887543 23445556778999999999999987643 357999999887643 3333444556789999999
Q ss_pred EEEEEE-CCC--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC-Cc--EEEEEccCCeeeeeecccCCCC
Q 002266 117 MLAAAG-DDE--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI-GT--VIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 117 ~Lasgs-~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D-g~--I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
.|+... .+| .|++||+.++.... +..+...+....|+|+|+.|+.++.+ |. |+++|+.++... .+..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~----- 328 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW----- 328 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----
Confidence 888763 344 48999998876543 44445677899999999988776654 44 444466555432 2211
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCe---EEEE
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLK---NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQ---ILIW 264 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~d---g~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~---I~IW 264 (945)
........+|+|+|++|+..+.+ ..|++||+.++... .+... .......|+|||++|+.++.++. +.++
T Consensus 329 --~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 329 --EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred --CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 11223468999999999886543 35889999887643 33321 22346789999999999887764 7788
Q ss_pred ECCCCeeeeeccCCCCeeEEEEecC
Q 002266 265 DVGKKLDIDRQKFDDRICCMAWKPI 289 (945)
Q Consensus 265 D~~~~~~i~~~~~~~~V~~la~spd 289 (945)
++..+.......+...+...+|+|-
T Consensus 404 ~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 404 STDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ECCCCCeEECccCCCCcCCcccCCC
Confidence 8866555555556778889999873
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=2.7e-13 Score=141.27 Aligned_cols=234 Identities=12% Similarity=0.166 Sum_probs=181.9
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe---eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-C-
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE---FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID-G- 135 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~---~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~- 135 (945)
..+|+|.+|++|+..+|++.....|.||.....+ ...++..|...|+.+.|+|..+.|++++.|..-+||.... +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 5789999999999999999999999999987654 5567888999999999999999999999999999999843 3
Q ss_pred -eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 136 -SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 136 -~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
++...+..+...++++.|+|.++.+++++.-..|.||-++....-..-+.. .....+.|.++.|+|++-+|++|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi---kkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI---KKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh---CCccccceeeeeccCCcceeccccc
Confidence 345556678899999999999999999999999999988665432221111 1133577899999999999999999
Q ss_pred CCeEEEEECC-----C-------------CcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eeee-
Q 002266 215 KNDVVMYDRD-----T-------------AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKL-DIDR- 274 (945)
Q Consensus 215 dg~I~vwD~~-----t-------------~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~-~i~~- 274 (945)
|+..+||..- . |+.+.++. ...+.|..+.|+|+|..|+-.+.|+.+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 9999998632 1 12222332 256789999999999999999999999999987764 2222
Q ss_pred ccCCCCeeEEEEecCCCEEEEEEcC
Q 002266 275 QKFDDRICCMAWKPIGNALAVIDVM 299 (945)
Q Consensus 275 ~~~~~~V~~la~spdg~~Las~s~D 299 (945)
....-+..++.|-.+. .++.++.|
T Consensus 246 ~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 246 ATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred hhccCCceeeEeecCC-ceeecCCC
Confidence 2223567788887654 34444444
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.55 E-value=2.5e-13 Score=139.51 Aligned_cols=236 Identities=14% Similarity=0.317 Sum_probs=174.9
Q ss_pred CCCCCEEEEEECCCCC-----EEEEEEcCCCeEEEEcCCCCc---ccccc-----ccccccceEEEEEec-CCCEEEEEE
Q 002266 15 GNAASFCSILWDQQAH-----HLVTASSSETTISIHDPLLPS---NLPKI-----LRHHRDGVTALALSP-NSTCLASGS 80 (945)
Q Consensus 15 gh~~~V~svafspdg~-----~L~t~g~~dg~V~IWd~~~~~---~~~~~-----l~~h~~~V~~la~sp-dg~~Lasgs 80 (945)
.|.=+++.+-|.|+.. .||+++ -.+|+|.+.... .+... -..+..++++..|+. +.++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc---CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 5667899999999873 455543 479999876321 11111 224567899999998 778999999
Q ss_pred cCCcEEEEEcCCCe---eeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEEEEE---ecCCCCEEEEEE
Q 002266 81 IDHSVKLYKFPGGE---FQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIARVL---KGHKGPVTGLAF 153 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~---~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~l---~~h~~~V~~laf 153 (945)
-|.+..|||+.++. ....+..|...|.+++|...+ ..+|+.|.||.|++||++.......+ .....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999863 355677899999999999854 57899999999999999875433222 222467888999
Q ss_pred cc-CCCEEEEEeCC-CcEEEEEccCCe-eeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE-
Q 002266 154 DP-NSEYLASIDSI-GTVIYWELQSGR-ELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEK- 228 (945)
Q Consensus 154 sp-dg~~Las~s~D-g~I~iwDl~t~~-~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~- 228 (945)
++ +-+++|+-..| ..|.|.|++... .+..+ ..|...|+.++|.| ....|++++.|..+.+||+.+.-.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-------~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-------RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehh-------hcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 98 45677776555 479999998753 33333 36778899999999 678999999999999999975432
Q ss_pred -----EEeecCCCCCCeEEEEEcC-CCCEEEEEECCCeEEE
Q 002266 229 -----LFSLRGDHVQPICFLSWSP-NGKYMATSSLDRQILI 263 (945)
Q Consensus 229 -----~~~~~~~h~~~I~~l~fSp-dg~~Lasgs~Dg~I~I 263 (945)
+..+. ..+.|+.++|++ .+.+++.+. ++.+.|
T Consensus 324 ~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 324 NGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 22222 457899999997 677888776 344444
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.2e-14 Score=155.43 Aligned_cols=268 Identities=18% Similarity=0.243 Sum_probs=213.4
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI 99 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l 99 (945)
-+.+.|+.+|++|+.+| ..|.|..+|..+.. +...+. -...|.++.|..+..++|++- ...++|||- .|..+..+
T Consensus 132 PY~~~ytrnGrhlllgG-rKGHlAa~Dw~t~~-L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGG-RKGHLAAFDWVTKK-LHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecC-Cccceeeeecccce-eeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeeh
Confidence 35688999999999997 89999999988763 232222 256799999999888888865 467999994 56666666
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCee
Q 002266 100 TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRE 179 (945)
Q Consensus 100 ~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~ 179 (945)
..+ ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-+..+-+|..+|+|.+|.......
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 654 5788999999988999999999999999999999999988889999999999999999999999999999887766
Q ss_pred eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC
Q 002266 180 LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR 259 (945)
Q Consensus 180 i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg 259 (945)
+..+- .|.++|.++++.++|+|+++.+.|..++|||++....+.++.. ..+...+++|..|- ||. +...
T Consensus 286 LvKiL-------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkgl-LA~-~~G~ 354 (545)
T KOG1272|consen 286 LVKIL-------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGL-LAL-SYGD 354 (545)
T ss_pred HHHHH-------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccccc-eee-ecCC
Confidence 55443 5678899999999999999999999999999999887777654 34677788887763 333 3445
Q ss_pred eEEEEE-CCCC-----eeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 002266 260 QILIWD-VGKK-----LDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGV 304 (945)
Q Consensus 260 ~I~IWD-~~~~-----~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~i 304 (945)
.|.||. .-.+ .+.........|..+.|+|-...|-.|...|.-.+
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 799994 2221 11122334678999999998888888887775444
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=136.54 Aligned_cols=279 Identities=12% Similarity=0.174 Sum_probs=198.8
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCE-EEEEEcCCcEEEEEcCCCeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTC-LASGSIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~-Lasgs~Dg~V~iwdl~~g~~~ 96 (945)
..|.-+.|..|..+++.+...++.|.+|++..+. -...+.....++.+++|+|||+. |.+...+-.|.+|++.+....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 4567788999999999888899999999987653 23344555788999999999955 455667889999999876543
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECC------------------------------------CcEEEEEcCCCeEEEE
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDD------------------------------------EGIKLINTIDGSIARV 140 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~D------------------------------------g~I~iwd~~~~~~~~~ 140 (945)
.+...+..+..++|+|+|++.+.++.- ..+.|||..-.-.+..
T Consensus 128 -~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 128 -LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred -EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 344445567889999999988776532 1234444321112212
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeee-----------------------------ccc-----
Q 002266 141 LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNL-----------------------------KRV----- 186 (945)
Q Consensus 141 l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~-----------------------------~~~----- 186 (945)
+. -.-.+..++|+|.+++|++|+.|+.++|.+--+-+....+ ...
T Consensus 207 Ye-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 207 YE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred ee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 21 2256889999999999999999999888654321111000 000
Q ss_pred -----------------------C--CCCCCCCCCceEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEeecCCCCCC
Q 002266 187 -----------------------A--PDIGSDPSSMNVLSWSPDGETLAVPGL--KNDVVMYDRDTAEKLFSLRGDHVQP 239 (945)
Q Consensus 187 -----------------------~--~~~~~~~~~i~~l~~spdg~~La~gs~--dg~I~vwD~~t~~~~~~~~~~h~~~ 239 (945)
. .........+..++|++|..++++-.. -+.+.+||++..+.-..+. ...+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~p 363 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHP 363 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--hccc
Confidence 0 001111234667999999999998653 3579999998766544443 4568
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCe
Q 002266 240 ICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGK 301 (945)
Q Consensus 240 I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~ 301 (945)
|....|.|....|+.+.....+++|.......+....-.-.|..+.|+-+|..++..+.|..
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 99999999888888888788899999988777777666678999999999999999988864
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.4e-12 Score=149.88 Aligned_cols=289 Identities=19% Similarity=0.230 Sum_probs=213.8
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc---ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC--C--
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSN---LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG--G-- 93 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~---~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~--g-- 93 (945)
.+|.+++.|.+.+.+- +..+.+|....... ....-..|.-.++|.+++|.++++|+|..||.|.+|.--. +
T Consensus 164 ~~I~~~~~ge~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH--MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEE--eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 4567888898877763 66788998766431 1122335777799999999999999999999999997322 1
Q ss_pred eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 94 EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 94 ~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
.....+.-|...|.+++|+++|.+|++||..+.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|..|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 2345677789999999999999999999999999999999988 455666778999999999999999999999999998
Q ss_pred ccCCeeeeeecccCCC----CCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecC----------CCCCC
Q 002266 174 LQSGRELHNLKRVAPD----IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRG----------DHVQP 239 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~----~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~----------~h~~~ 239 (945)
..+.....++.+..+. .....+-.+.++++|.-+.++..+..|.|.+||+-+.+.+..+.. .+.-.
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ 400 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG 400 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence 8666555555443333 112334567799999777888888999999999988776554431 12235
Q ss_pred eEEEEEcCCCCEEEEEE--------CCC--eEEEEECCCCe----eeee--ccCCCCeeEEEEec-CCC-EEEEEEcCCe
Q 002266 240 ICFLSWSPNGKYMATSS--------LDR--QILIWDVGKKL----DIDR--QKFDDRICCMAWKP-IGN-ALAVIDVMGK 301 (945)
Q Consensus 240 I~~l~fSpdg~~Lasgs--------~Dg--~I~IWD~~~~~----~i~~--~~~~~~V~~la~sp-dg~-~Las~s~DG~ 301 (945)
++.++.+..|.+++|.- .|| .+++|-..... +... ..|...+...++.+ ... .+++++.||.
T Consensus 401 itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 401 ITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred eeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCe
Confidence 77888888899999874 233 57889764432 2222 34555555555544 333 7999999999
Q ss_pred EEEEecCCCCC
Q 002266 302 YGVWESVVPSS 312 (945)
Q Consensus 302 I~iWd~~~~~~ 312 (945)
++||.+...+.
T Consensus 481 ~KiW~~~~~~n 491 (792)
T KOG1963|consen 481 FKIWVFTDDSN 491 (792)
T ss_pred EEEEEEecccc
Confidence 99999865443
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.4e-13 Score=153.58 Aligned_cols=234 Identities=18% Similarity=0.184 Sum_probs=162.3
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~ 116 (945)
..|++||.... ....+..+...+.+.+|+|||+.|+.++.. ..|++|++.+++.. .+..+.+....+.|+|+|+
T Consensus 184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC
Confidence 46889987532 344566677789999999999999987643 46999999887653 3344455566889999999
Q ss_pred EEEEE-ECCC--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CCc--EEEEEccCCeeeeeecccCCCC
Q 002266 117 MLAAA-GDDE--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IGT--VIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 117 ~Lasg-s~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg~--I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
.|+.. +.++ .|++||+.++.. ..+..+......++|+|+|++|+.++. +|. |+++|+.+++... +..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~----- 333 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF----- 333 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-----
Confidence 87654 4555 599999988764 345556556678999999998887663 444 6666766654322 211
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEE
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLD---RQILIW 264 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D---g~I~IW 264 (945)
.......++|+|+|++|+..+.++ .|.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|.++
T Consensus 334 --~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 --QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred --CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 112234589999999998876443 6999999887654 3332 2234567999999998877653 468888
Q ss_pred ECCCCeeeeeccCCCCeeEEEEec
Q 002266 265 DVGKKLDIDRQKFDDRICCMAWKP 288 (945)
Q Consensus 265 D~~~~~~i~~~~~~~~V~~la~sp 288 (945)
++..+.......+.+.+...+|+|
T Consensus 409 ~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCCCceEEcccCCCCCCCCccCC
Confidence 886654433333456677888886
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.2e-13 Score=144.11 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=187.6
Q ss_pred cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC------Ceeeeecc-cCCCCEEEEEEecCCCEEEEEECCCc
Q 002266 54 PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG------GEFQTNIT-RFTLPIRVLAFNKSGSMLAAAGDDEG 126 (945)
Q Consensus 54 ~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~------g~~~~~l~-~~~~~V~~l~fspdg~~Lasgs~Dg~ 126 (945)
.+-+.+|.+.|.+|.|+.++++|++|+.|..+++|.+.. .+.+.... .|...|.|++|....+.+.+|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345678999999999999999999999999999999753 23333333 34578999999999999999999999
Q ss_pred EEEEEcCCCeEEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC
Q 002266 127 IKLINTIDGSIARVLKG--HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP 204 (945)
Q Consensus 127 I~iwd~~~~~~~~~l~~--h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp 204 (945)
|...|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+.......+... .........+.|+|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~----AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP----ANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee----cCCCccceeeeecC
Confidence 99999999887766642 3358999999999999999999999999999876521111111 12234567789999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCcE-EEeecCC-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-eeecc
Q 002266 205 -DGETLAVPGLKNDVVMYDRDTAEK-LFSLRGD-----HVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLD-IDRQK 276 (945)
Q Consensus 205 -dg~~La~gs~dg~I~vwD~~t~~~-~~~~~~~-----h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~-i~~~~ 276 (945)
...+|++.+..+.+-+||++.... +....+. ....-..+.|+|+|..|.+.-....-.+||+.+..+ +....
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 567888889899999999986542 2221110 112235688999999988877666677889877443 34444
Q ss_pred CC-------CCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 277 FD-------DRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 277 ~~-------~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
|. ..+.+++|..+- .+++|+.+=.|++|.+.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 43 346677787654 48999999999999875
No 213
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.1e-14 Score=166.72 Aligned_cols=266 Identities=17% Similarity=0.226 Sum_probs=190.0
Q ss_pred ccccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC--
Q 002266 5 SVKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID-- 82 (945)
Q Consensus 5 ~i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D-- 82 (945)
+++.+.... .|....+|++|+-+.++|++|. ..|.|+++++.++. .......|..+|+-+.=+.||..+++.+.-
T Consensus 1090 RFr~w~~fr-d~~~~fTc~afs~~~~hL~vG~-~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFR-DETALFTCIAFSGGTNHLAVGS-HAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hcccchhhh-ccccceeeEEeecCCceEEeee-ccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccC
Confidence 344455555 6779999999999999999986 89999999998884 456678899999999988899888775543
Q ss_pred CcEEEEEcCC-CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe----cCCCCEEEEEEccCC
Q 002266 83 HSVKLYKFPG-GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK----GHKGPVTGLAFDPNS 157 (945)
Q Consensus 83 g~V~iwdl~~-g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~----~h~~~V~~lafspdg 157 (945)
-...+|++.+ +.....+. .-.++.|+.....-+.|+......+||++++..+.++- +....-.+..|+|+.
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred chHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 3578999754 22222222 34678888765555667666788999999988766532 122333678899998
Q ss_pred CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCC
Q 002266 158 EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHV 237 (945)
Q Consensus 158 ~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~ 237 (945)
.+++ .|| .+||++..+.++.+....... .-.|||.|..+++-+ .|||+++.+.++.++.
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~--------~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~--- 1301 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFTDYG--------GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS--- 1301 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhheecc--------cccccCCCceEEeec-----hhhhhHHHHHHhcCcc---
Confidence 8776 355 589999988888776543211 236999999999876 6899999988877754
Q ss_pred CCeEEEEEcCCCCEEEEEEC------C-----------CeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEc
Q 002266 238 QPICFLSWSPNGKYMATSSL------D-----------RQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDV 298 (945)
Q Consensus 238 ~~I~~l~fSpdg~~Lasgs~------D-----------g~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~ 298 (945)
-.-+.+.|...|..++..-. | ...+-||......+..+.....|..++-.|...+|++...
T Consensus 1302 Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1302 LDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred ccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEec
Confidence 33456788888876654420 0 1244455555556666666677888888887777777644
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.6e-12 Score=150.06 Aligned_cols=234 Identities=15% Similarity=0.175 Sum_probs=164.3
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc---CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI---DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~---Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~ 116 (945)
..|++||... .....+..|...+.+.+|+|||+.|+..+. +..|++|++.+++.. .+..+.+.+...+|+|||+
T Consensus 182 ~~l~~~d~dg--~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG--ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC--CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 4788888643 334556677889999999999999988764 468999999887653 4555666788899999999
Q ss_pred EEEEE-ECCCc--EEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeeeeeecccCCCC
Q 002266 117 MLAAA-GDDEG--IKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IG--TVIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 117 ~Lasg-s~Dg~--I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg--~I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
.|+.. +.++. |++||+.++.. ..+..+........|+|+|+.|+..+. +| .|++||+..+... .+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~----- 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF----- 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-----
Confidence 87654 44554 78889887764 445556667788999999998887663 33 5888887665432 2221
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECC------CeE
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLK---NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLD------RQI 261 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~d---g~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D------g~I 261 (945)
....+....|+|+|++|+..+.+ ..|.+||+.++.. ..+.. ...+..+.|+|||++|+..+.+ ..|
T Consensus 332 --~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 332 --GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred --CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence 12234558899999999887643 3688999865543 33332 2346778999999998776543 368
Q ss_pred EEEECCCCeeeeeccCCCCeeEEEEecC
Q 002266 262 LIWDVGKKLDIDRQKFDDRICCMAWKPI 289 (945)
Q Consensus 262 ~IWD~~~~~~i~~~~~~~~V~~la~spd 289 (945)
+++|+..+... .......+...+|+|-
T Consensus 407 ~~~dl~g~~~~-~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 407 YTVDLTGRNER-EVPTPGDASDPAWSPL 433 (435)
T ss_pred EEEECCCCceE-EccCCCCccCcccCCC
Confidence 88888776553 3233445677788763
No 215
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.3e-12 Score=131.26 Aligned_cols=231 Identities=13% Similarity=0.122 Sum_probs=174.0
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCC----------eeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGG----------EFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g----------~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd 131 (945)
..|.+-+|+|.+++|++|+.+|+|.++.+.+. ..+.....|.++|..++|. ..+|++|++ |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 34666789999999999999999999998531 2233457899999999998 356666654 9999887
Q ss_pred cCCCeE------EEEE--ecCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCce
Q 002266 132 TIDGSI------ARVL--KGHK-----GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMN 198 (945)
Q Consensus 132 ~~~~~~------~~~l--~~h~-----~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~ 198 (945)
.+.... +... .-|. -.|+++...|..+-+++++.|+.++.||+++|+..+.+.+ |...+.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-------HtDYvH 160 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-------HTDYVH 160 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-------Ccceee
Confidence 654221 1011 1122 3588999999888888888999999999999998888764 557778
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC--------C-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002266 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD--------H-VQPICFLSWSPNGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 199 ~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~--------h-~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
++.-......+++|+.||++++||.++++.+..+... | ...|.+++ -+..+|++|+ ...+.+|.++..
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCC
Confidence 8887555667899999999999999999988776431 1 12344444 4566888876 456999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 270 LDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 270 ~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
+....+....++..+.|..+ .+++++....|.-|.+
T Consensus 238 e~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 238 ESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceEEEecccceeEeeeecc--eEEEeccccceeeeee
Confidence 99999888999999999765 5666776667777764
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.2e-12 Score=150.09 Aligned_cols=234 Identities=18% Similarity=0.170 Sum_probs=156.0
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCC
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGS 116 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~ 116 (945)
..|.+||... .....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+......+...+|+|||+
T Consensus 176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 4677777532 3344455677889999999999999887643 45999999888754 3344455677899999999
Q ss_pred EEEE-EECCCcEEEE--EcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcc--CCeeeeeecccCCCC
Q 002266 117 MLAA-AGDDEGIKLI--NTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IGTVIYWELQ--SGRELHNLKRVAPDI 190 (945)
Q Consensus 117 ~Las-gs~Dg~I~iw--d~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg~I~iwDl~--t~~~i~~~~~~~~~~ 190 (945)
.|+. .+.++...|| |+..+. ...+..+...+....|+|||++|+..+. +|...||.+. ++.. ..+...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~---- 326 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT---- 326 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC----
Confidence 8875 5667765555 554444 4455556666678899999998876554 4666666553 3332 222110
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC---eEEEE
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR---QILIW 264 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg---~I~IW 264 (945)
.......+|+|+|++|+..+.++ .|++||+.+++....... .......|+|||++|+.++.++ .+.+.
T Consensus 327 ---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 327 ---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred ---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC---CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 11223578999999999877654 699999988765433222 2346789999999988877544 36666
Q ss_pred ECCCCeeeee-ccCCCCeeEEEEecC
Q 002266 265 DVGKKLDIDR-QKFDDRICCMAWKPI 289 (945)
Q Consensus 265 D~~~~~~i~~-~~~~~~V~~la~spd 289 (945)
++.. ..... ..+.+.+...+|+|-
T Consensus 401 ~~~g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SSDG-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECCC-CceEEeecCCCCCCCCccCCC
Confidence 6643 33333 334566778888874
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=7.9e-13 Score=145.67 Aligned_cols=242 Identities=17% Similarity=0.218 Sum_probs=161.6
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccc---ccccceEEEEE-----ecCCCEEEEEEcCCcEEEEEcC
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILR---HHRDGVTALAL-----SPNSTCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~---~h~~~V~~la~-----spdg~~Lasgs~Dg~V~iwdl~ 91 (945)
+....++-.|++|+..- ...+.+|+..........+. -.....+|-+| .+.+--|+.|-..|.|+++|..
T Consensus 126 ~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEec--CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 44555666778887764 44677887653222111111 01122334444 3466677788888999999865
Q ss_pred CCeeeeecc----cCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEE--EccCCCEEEEEe
Q 002266 92 GGEFQTNIT----RFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLA--FDPNSEYLASID 164 (945)
Q Consensus 92 ~g~~~~~l~----~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~la--fspdg~~Las~s 164 (945)
..+....+. -....|+|+.|-| +...++++-.+|.+++||.. +....+... ..+++..+....
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCeeEEee
Confidence 532211111 1246899999999 44567777889999999861 111222222 233555554432
Q ss_pred CCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEE
Q 002266 165 SIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLS 244 (945)
Q Consensus 165 ~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~ 244 (945)
.-+. .+...+..+. .....|+.++|+|||++||+.+.||.++|||..+.+.+..++. .-+...|++
T Consensus 274 ~ksk------~~rNPv~~w~-------~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvc 339 (636)
T KOG2394|consen 274 SKSK------KTRNPVARWH-------IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVC 339 (636)
T ss_pred eecc------ccCCccceeE-------eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEE
Confidence 2110 1112222221 1124678899999999999999999999999998877666654 557899999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEe
Q 002266 245 WSPNGKYMATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWK 287 (945)
Q Consensus 245 fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~s 287 (945)
|||||+||++|+.|--|.||.+..++++.+ .+|...|..++|.
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999988 8899999999998
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=1.2e-11 Score=140.23 Aligned_cols=274 Identities=13% Similarity=0.150 Sum_probs=177.0
Q ss_pred CCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEE
Q 002266 29 AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRV 108 (945)
Q Consensus 29 g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~ 108 (945)
+++++++-..++.|.|.|..+. +....+.........+.|+|||+++++++.||.|.++|+.+++.+..+.. ......
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 3445555557899999998776 34445554333345578999999999999999999999999998888864 445788
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEEcCCCeEEEEEecC-------CCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCee
Q 002266 109 LAFNKSGSMLAAAG-DDEGIKLINTIDGSIARVLKGH-------KGPVTGLAFDPNSEYLASIDS-IGTVIYWELQSGRE 179 (945)
Q Consensus 109 l~fspdg~~Lasgs-~Dg~I~iwd~~~~~~~~~l~~h-------~~~V~~lafspdg~~Las~s~-Dg~I~iwDl~t~~~ 179 (945)
+++++||++++++. ..+.+.++|.++.+.++.+... ...+..|..+|....++..-. .+.|.+.|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999998876 5889999999999988877542 346788888888885555544 47888888766543
Q ss_pred eeeecccCCCCCCCCCCceEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEee--------------------------
Q 002266 180 LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP-GLKNDVVMYDRDTAEKLFSL-------------------------- 232 (945)
Q Consensus 180 i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g-s~dg~I~vwD~~t~~~~~~~-------------------------- 232 (945)
+...... .........|+|++++++++ ...+.|.++|..+++.+..+
T Consensus 163 ~~~~~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 163 LKVTTIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp EEEEEEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred cceeeec------ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 3221110 11334568999999988775 34557777776655433221
Q ss_pred -----------------------------cCCCCCCeEEEEEcCCCCEEEEE----ECCCeEEEEECCCCeeeeeccC--
Q 002266 233 -----------------------------RGDHVQPICFLSWSPNGKYMATS----SLDRQILIWDVGKKLDIDRQKF-- 277 (945)
Q Consensus 233 -----------------------------~~~h~~~I~~l~fSpdg~~Lasg----s~Dg~I~IWD~~~~~~i~~~~~-- 277 (945)
.. ...+ ..+..+|+++++.+. ...+.|.|+|..+.+.+..+..
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~ 314 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP 314 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred cccceecccccCCccccchhhcCeEEEEEEC-CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence 11 1112 446679999999988 3458999999999987776543
Q ss_pred CCCeeEEEEecCCCEEEEEE--cCCeEEEEecCCCCC
Q 002266 278 DDRICCMAWKPIGNALAVID--VMGKYGVWESVVPSS 312 (945)
Q Consensus 278 ~~~V~~la~spdg~~Las~s--~DG~I~iWd~~~~~~ 312 (945)
...+..+.|+++|+.+..+. .+|.|.+||..+-+.
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 33599999999999655543 444799999876554
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.4e-12 Score=139.42 Aligned_cols=263 Identities=12% Similarity=0.142 Sum_probs=192.3
Q ss_pred CCCEEEEEECCCCCE-EEEEEcCCCeEEEEcCCCCccccc-----cccccccceEEEEEecCCCEEEEEEcCCcEEEEEc
Q 002266 17 AASFCSILWDQQAHH-LVTASSSETTISIHDPLLPSNLPK-----ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKF 90 (945)
Q Consensus 17 ~~~V~svafspdg~~-L~t~g~~dg~V~IWd~~~~~~~~~-----~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl 90 (945)
...|.+++|.-+++. ++.+++.+..+..+.......... .......+|..++.. | ..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEec
Confidence 456888888766653 333333555666666544432222 233445677777654 3 37888889999999998
Q ss_pred CCCee----eeecccCCCCEEEEEEecCCC-EEEEEECC--CcEEEEEcCCCeEEEEEecC---------CCCEEEEEEc
Q 002266 91 PGGEF----QTNITRFTLPIRVLAFNKSGS-MLAAAGDD--EGIKLINTIDGSIARVLKGH---------KGPVTGLAFD 154 (945)
Q Consensus 91 ~~g~~----~~~l~~~~~~V~~l~fspdg~-~Lasgs~D--g~I~iwd~~~~~~~~~l~~h---------~~~V~~lafs 154 (945)
..+.. ...+. ...++..+.-++... .+++|+.. ..+.|||++..+.+..-+.- .-.++++.|-
T Consensus 133 k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 75431 11222 234566666666444 55668888 78999999988655443221 2356788998
Q ss_pred cC--CCEEEEEeCCCcEEEEEccCC-eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEe
Q 002266 155 PN--SEYLASIDSIGTVIYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFS 231 (945)
Q Consensus 155 pd--g~~Las~s~Dg~I~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~ 231 (945)
+. ...|++++.-+.|++||.+.+ +++..+. ....+++++...|+|++|++|...+.+..||++.++....
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEec-------cccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 87 789999999999999999876 3444443 2357789999999999999999999999999999988777
Q ss_pred ecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecC
Q 002266 232 LRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPI 289 (945)
Q Consensus 232 ~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spd 289 (945)
......+.|+++..+|.+++||+++.|..|+|+|+.+.+++...-....++++.+.++
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 4444889999999999999999999999999999999888877666777888877654
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=151.76 Aligned_cols=222 Identities=21% Similarity=0.242 Sum_probs=164.9
Q ss_pred ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec-ccCCCCEEEEEEec--CCCEEEEEECCCcEEE
Q 002266 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI-TRFTLPIRVLAFNK--SGSMLAAAGDDEGIKL 129 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l-~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~i 129 (945)
....+.+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ ++|...|.++.|.| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999999999999999999999998776665544 67999999999999 5678999999999999
Q ss_pred EEcCCC----------eEEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCeeeeeec-ccCC--CCCCCCC
Q 002266 130 INTIDG----------SIARVLKGHKGPVTGLAFDPNS-EYLASIDSIGTVIYWELQSGRELHNLK-RVAP--DIGSDPS 195 (945)
Q Consensus 130 wd~~~~----------~~~~~l~~h~~~V~~lafspdg-~~Las~s~Dg~I~iwDl~t~~~i~~~~-~~~~--~~~~~~~ 195 (945)
+|+... .....+..|...|..|+-.|++ ..+.+++.||+|+-||++....-..-. .+.. ......-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999742 2345567899999999999988 789999999999999998742211100 0000 0001113
Q ss_pred CceEEEEcC-CCCEEEEEeCCCeEEEEECCC--------Cc----------EEEeecCCCC-----------CCeEEEEE
Q 002266 196 SMNVLSWSP-DGETLAVPGLKNDVVMYDRDT--------AE----------KLFSLRGDHV-----------QPICFLSW 245 (945)
Q Consensus 196 ~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t--------~~----------~~~~~~~~h~-----------~~I~~l~f 245 (945)
...++..+| +..+|++|+.+...++||++. +. ++..+...|. ..++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 356789999 678999999999999999431 11 1222222222 12566889
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002266 246 SPNGKYMATSSLDRQILIWDVGKKLDIDR 274 (945)
Q Consensus 246 Spdg~~Lasgs~Dg~I~IWD~~~~~~i~~ 274 (945)
+|+|.-|+..-..-.|+++|+..++....
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 99998766665566899999987665544
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=151.67 Aligned_cols=225 Identities=16% Similarity=0.235 Sum_probs=164.5
Q ss_pred cccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec--CCCEEEEEEcCC
Q 002266 6 VKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP--NSTCLASGSIDH 83 (945)
Q Consensus 6 i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp--dg~~Lasgs~Dg 83 (945)
+.+..... ||.+.|+|+.|+.+|.+|++|+ .|-.+.|||....+....+-.+|...|.++.|-| +.+.+++|+.|.
T Consensus 40 L~lE~eL~-GH~GCVN~LeWn~dG~lL~SGS-DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 40 LDLEAELT-GHTGCVNCLEWNADGELLASGS-DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred cchhhhhc-cccceecceeecCCCCEEeecC-CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 33444455 8889999999999999999886 9999999998866555566679999999999999 557889999999
Q ss_pred cEEEEEcCCC----------eeeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCeEE----------EEEe
Q 002266 84 SVKLYKFPGG----------EFQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGSIA----------RVLK 142 (945)
Q Consensus 84 ~V~iwdl~~g----------~~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~----------~~l~ 142 (945)
.|++||+... .....+..|...|..|+-.|++ +.+.+++.||+|+-+|++..... ..+.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999742 2233455678889999999988 78999999999999999864211 1111
Q ss_pred cCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCee------------------eeeecc-cCCCCCC-CC---CCce
Q 002266 143 GHKGPVTGLAFDPN-SEYLASIDSIGTVIYWELQSGRE------------------LHNLKR-VAPDIGS-DP---SSMN 198 (945)
Q Consensus 143 ~h~~~V~~lafspd-g~~Las~s~Dg~I~iwDl~t~~~------------------i~~~~~-~~~~~~~-~~---~~i~ 198 (945)
..--...|+..+|. ..+|++|+.|-..++||.+.... +..+.. +...... .. ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 22245678999995 45889999999999999543211 111100 0000000 00 1245
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee
Q 002266 199 VLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 199 ~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~ 232 (945)
-++|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 6889999998888777779999999887755443
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=2.7e-12 Score=152.88 Aligned_cols=256 Identities=16% Similarity=0.186 Sum_probs=185.2
Q ss_pred cccccccccccceEEEEEecCC-CEEEEEEcCCcEEEEEcCCC-------eeeeecccCCCCEEEEEEecCCCEEEEEEC
Q 002266 52 NLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVKLYKFPGG-------EFQTNITRFTLPIRVLAFNKSGSMLAAAGD 123 (945)
Q Consensus 52 ~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl~~g-------~~~~~l~~~~~~V~~l~fspdg~~Lasgs~ 123 (945)
.....+..|...|..++.++.. .+|++|+.||+|++|++..- +...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4456677788889899888754 99999999999999997532 122233345678999999999999999999
Q ss_pred CCcEEEEEcCCCe-------EEEEEecC-CCCE-EEEEEcc-CCC-EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCC
Q 002266 124 DEGIKLINTIDGS-------IARVLKGH-KGPV-TGLAFDP-NSE-YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGS 192 (945)
Q Consensus 124 Dg~I~iwd~~~~~-------~~~~l~~h-~~~V-~~lafsp-dg~-~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~ 192 (945)
||.|.+.++.... ..+....+ .+.+ ..-+|.. .+. .|+.+...+.|..||++.......++.. .
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-----~ 1193 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-----L 1193 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC-----c
Confidence 9999999887521 11111112 2233 3333433 233 6778888899999999987666555432 2
Q ss_pred CCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC---CCEEEEEE--CCCeEEEEECC
Q 002266 193 DPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN---GKYMATSS--LDRQILIWDVG 267 (945)
Q Consensus 193 ~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd---g~~Lasgs--~Dg~I~IWD~~ 267 (945)
..+.|++++.+|.+.++++|+..|.+.+||++-+.++.....++..+|..+..+|- ....++++ ..+.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 34678999999999999999999999999999888888887767789999888773 24555544 46789999998
Q ss_pred CCeeeeeccCC------------------C--CeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 268 KKLDIDRQKFD------------------D--RICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 268 ~~~~i~~~~~~------------------~--~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
++......-.. . .....++...+..+.+|+.|+.|+.||...|..
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 87543321110 1 112233333455899999999999999987764
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=8.6e-12 Score=130.24 Aligned_cols=236 Identities=14% Similarity=0.233 Sum_probs=166.2
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEE-EECC------CcEEEEEcCCC
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAA-AGDD------EGIKLINTIDG 135 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Las-gs~D------g~I~iwd~~~~ 135 (945)
....++|+.|...+++|..+| .+||+++--+.......+.+.+.-+...-..++||. ||.. ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999988777 899998653322222222222222221123344444 3332 36999996666
Q ss_pred eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ-SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~-t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
.++..+. ...+|.++.+.++ .|++.- .+.|.||... ..+.++.+.... .+..+.+++-+.+..+||..+.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-----NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-----NPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-----CCCceEeecCCCCceEEEcCCC
Confidence 7777765 5689999999865 355444 5789999987 446666665432 1223333333334556666554
Q ss_pred -CCeEEEEECCCCcE--EEeecCCCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeeeecc---CCCCeeEEEEe
Q 002266 215 -KNDVVMYDRDTAEK--LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQ-ILIWDVGKKLDIDRQK---FDDRICCMAWK 287 (945)
Q Consensus 215 -dg~I~vwD~~t~~~--~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~-I~IWD~~~~~~i~~~~---~~~~V~~la~s 287 (945)
-|.|.|.|+...+. ...+.. |...|.+++.+-+|..+||+|..|+ |+|||..++..+.... ....|.+++|+
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 68999999986554 345554 9999999999999999999999997 7999999999887743 24679999999
Q ss_pred cCCCEEEEEEcCCeEEEEecCC
Q 002266 288 PIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 288 pdg~~Las~s~DG~I~iWd~~~ 309 (945)
|++.+||+++..|+|.|+.+..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999998864
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.1e-12 Score=150.14 Aligned_cols=240 Identities=14% Similarity=0.198 Sum_probs=175.9
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccC---CCCEEEEEEec--CCCEEEEEECCCcEEEEEcCC-
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRF---TLPIRVLAFNK--SGSMLAAAGDDEGIKLINTID- 134 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~---~~~V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~- 134 (945)
..+...+.|+|-...++++...-.|+|||...++....+..+ ...|+.+.+-. |..++++|+.||.|+||+--.
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345677888998888999887789999999998876665433 34688888875 567899999999999996432
Q ss_pred ----CeEEEEEec-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEc
Q 002266 135 ----GSIARVLKG-------HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWS 203 (945)
Q Consensus 135 ----~~~~~~l~~-------h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s 203 (945)
.+.+..+.+ ..+.-.-+.|.....+|++++.-..|+|||......+..+... ....++++.-+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~------s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG------SSTLVTALSAD 1217 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC------CCccceeeccc
Confidence 223333222 1122244678777777777777789999999887777666432 23445555443
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCCcE---EEeecCCCCCC--eEEEEEcCCCCE-EEEEECCCeEEEEECCCCeeeee--
Q 002266 204 P-DGETLAVPGLKNDVVMYDRDTAEK---LFSLRGDHVQP--ICFLSWSPNGKY-MATSSLDRQILIWDVGKKLDIDR-- 274 (945)
Q Consensus 204 p-dg~~La~gs~dg~I~vwD~~t~~~---~~~~~~~h~~~--I~~l~fSpdg~~-Lasgs~Dg~I~IWD~~~~~~i~~-- 274 (945)
- .|+.|++|..||.|++||.+...+ +..... |... |..+.+.+.|-- |++|+.+|.|++||++.......
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCccccceeecc-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 3 579999999999999999986543 333333 6655 999999997754 99999999999999987422211
Q ss_pred -c---cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 275 -Q---KFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 275 -~---~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
. ...+.++++..|++...+|+|+. +.|.||++.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 1 12345999999999999999998 999999975
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.5e-11 Score=141.77 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=149.8
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEEC---CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCE
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD---DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~---Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~ 159 (945)
..|.+||... .....+..+...+...+|+|||+.|+..+. +..|++||+.++... .+..+.+.+...+|+|+|+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 3788888754 445566777889999999999999988764 457999999887653 45556677889999999997
Q ss_pred EE-EEeCCCc--EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-C--CeEEEEECCCCcEEEeec
Q 002266 160 LA-SIDSIGT--VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-K--NDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 160 La-s~s~Dg~--I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-d--g~I~vwD~~t~~~~~~~~ 233 (945)
|+ +.+.+|. |++||+.++.... +.. +.......+|+|||+.|+..+. + ..|++||+.++.... +.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt 330 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTR-LTD-------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-IS 330 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEE-ccC-------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-ee
Confidence 75 4455554 7777887765432 221 2233456899999999988764 2 368899987665433 32
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcC------CeEEE
Q 002266 234 GDHVQPICFLSWSPNGKYMATSSLD---RQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVM------GKYGV 304 (945)
Q Consensus 234 ~~h~~~I~~l~fSpdg~~Lasgs~D---g~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~D------G~I~i 304 (945)
. +...+....|+|+|++|+..+.+ ..|.+||+.++... .......+..+.|+|+|+.|+..+.+ ..|.+
T Consensus 331 ~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 331 F-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred c-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 2 33456678899999999887653 36888998665432 22233357788999999988876543 24666
Q ss_pred EecC
Q 002266 305 WESV 308 (945)
Q Consensus 305 Wd~~ 308 (945)
+++.
T Consensus 409 ~dl~ 412 (435)
T PRK05137 409 VDLT 412 (435)
T ss_pred EECC
Confidence 6653
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.6e-12 Score=145.55 Aligned_cols=217 Identities=14% Similarity=0.166 Sum_probs=151.8
Q ss_pred CCCCEEEEEECCCCCEEEEEEc--CCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEE-EcCC--cEEEEEc
Q 002266 16 NAASFCSILWDQQAHHLVTASS--SETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASG-SIDH--SVKLYKF 90 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~--~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasg-s~Dg--~V~iwdl 90 (945)
+...+.+.+|||||+.|+..+. .+..|++|++.++. ...+....+.+..++|+|||+.|+.. +.+| .|++||+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 3457899999999999987642 34578999987653 22222233445578999999988865 3444 5889999
Q ss_pred CCCeeeeecccCCCCEEEEEEecCCCEEEEEECC-C--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC-
Q 002266 91 PGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD-E--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI- 166 (945)
Q Consensus 91 ~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D-g--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D- 166 (945)
.+++.. .+..+...+....|+|+|+.|+..+.+ + .|+++|+.++.. ..+..+........|+|+|++|+..+.+
T Consensus 275 ~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 275 ASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 887654 344445567889999999999888764 3 455567766644 3444444556789999999998876543
Q ss_pred --CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe---EEEEECCCCcEEEeecCCCCCCeE
Q 002266 167 --GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND---VVMYDRDTAEKLFSLRGDHVQPIC 241 (945)
Q Consensus 167 --g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~---I~vwD~~t~~~~~~~~~~h~~~I~ 241 (945)
..|.+||+.++... .+... .......|+|||+.|+..+.++. +.++++. +.....+.. |.+.+.
T Consensus 353 g~~~I~~~dl~~g~~~-~Lt~~--------~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~-~~~~~~ 421 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ-VLTDT--------FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA-TDGQVK 421 (429)
T ss_pred CCceEEEEECCCCCeE-EeCCC--------CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECcc-CCCCcC
Confidence 35888999877543 22211 11234789999999999887764 6777874 555566665 777888
Q ss_pred EEEEcC
Q 002266 242 FLSWSP 247 (945)
Q Consensus 242 ~l~fSp 247 (945)
..+|+|
T Consensus 422 ~p~Wsp 427 (429)
T PRK03629 422 FPAWSP 427 (429)
T ss_pred CcccCC
Confidence 899987
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.5e-10 Score=121.05 Aligned_cols=238 Identities=17% Similarity=0.201 Sum_probs=163.7
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEE-EEcC------CcEEEEEcC
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS-GSID------HSVKLYKFP 91 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Las-gs~D------g~V~iwdl~ 91 (945)
...+++|+.|...++++. +.-.+||+.+.-.. ......+.+.+.-+..--..++|+. |+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~--~~Gfriyn~~P~ke-~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT--DTGFRIYNCDPFKE-SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEe--cCceEEEecCchhh-hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 456699999999988874 66789998754211 1111222222222222223345554 3322 479999955
Q ss_pred CCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC-CCeEEEEEecC--CCCEEEEEEccCCCEEEE-EeCCC
Q 002266 92 GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI-DGSIARVLKGH--KGPVTGLAFDPNSEYLAS-IDSIG 167 (945)
Q Consensus 92 ~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~-~~~~~~~l~~h--~~~V~~lafspdg~~Las-~s~Dg 167 (945)
...++..+. +..+|.++.+.++ .|++. ..+.|+||... +.+.++.+... ...+.+++-+.+..+||. |-.-|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 555555554 6789999999875 45544 36689999987 44555555432 233444443334445554 34468
Q ss_pred cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEeecC-CCCCCeEEEEE
Q 002266 168 TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND-VVMYDRDTAEKLFSLRG-DHVQPICFLSW 245 (945)
Q Consensus 168 ~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~-I~vwD~~t~~~~~~~~~-~h~~~I~~l~f 245 (945)
.|+|-|+...+.- ....+..|.+.|.|++.+-+|..+|+++..|+ |+|||..+++.+.++.. .....|.+++|
T Consensus 160 qvQi~dL~~~~~~-----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 160 QVQIVDLASTKPN-----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred eEEEEEhhhcCcC-----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 9999999765442 11223367899999999999999999999986 79999999999999864 34568999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCC
Q 002266 246 SPNGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 246 Spdg~~Lasgs~Dg~I~IWD~~~ 268 (945)
||++.+||++|..|+|.||.+..
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999998854
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.3e-11 Score=127.44 Aligned_cols=246 Identities=19% Similarity=0.227 Sum_probs=164.1
Q ss_pred CCCEEEEEECCCC-CEEEEEEcCCCeEEEEcCCCCccccc-----------cc--cccccceEEEEEecCCCEEEEEEc-
Q 002266 17 AASFCSILWDQQA-HHLVTASSSETTISIHDPLLPSNLPK-----------IL--RHHRDGVTALALSPNSTCLASGSI- 81 (945)
Q Consensus 17 ~~~V~svafspdg-~~L~t~g~~dg~V~IWd~~~~~~~~~-----------~l--~~h~~~V~~la~spdg~~Lasgs~- 81 (945)
...|+|++|-|.+ +.|+++| .+.|.||.......... .+ .+| .+|++++|.+||..|++++.
T Consensus 140 QrnvtclawRPlsaselavgC--r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGC--RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeeeee--cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 3679999999965 4566665 56799997543321111 11 233 68999999999999999875
Q ss_pred CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEE
Q 002266 82 DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLA 161 (945)
Q Consensus 82 Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~La 161 (945)
+..|.|||..++..+.......+.++-+.|||||.+|++++-|+..++|+....-.........+.|....|+|.|.+|+
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 57899999999987766656677899999999999999999999999996543322222333456999999999999876
Q ss_pred EEeCCCcEEEEEccCCeeee---------------eecccCCC--CCCCCCCceEEEEcCCCCEEEEEeCCC--------
Q 002266 162 SIDSIGTVIYWELQSGRELH---------------NLKRVAPD--IGSDPSSMNVLSWSPDGETLAVPGLKN-------- 216 (945)
Q Consensus 162 s~s~Dg~I~iwDl~t~~~i~---------------~~~~~~~~--~~~~~~~i~~l~~spdg~~La~gs~dg-------- 216 (945)
.++. |.-++|.+.-...-. .+...... ..-..+.+.+++|.|.|.+|++.-..+
T Consensus 297 f~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 297 FACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 6554 445666653221100 01100000 001235678999999999999975543
Q ss_pred eEEEEECCCCcEEEeec-C-CCCCCeEEEEEcC---CCCEEEEEECCCeEEEEEC
Q 002266 217 DVVMYDRDTAEKLFSLR-G-DHVQPICFLSWSP---NGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 217 ~I~vwD~~t~~~~~~~~-~-~h~~~I~~l~fSp---dg~~Lasgs~Dg~I~IWD~ 266 (945)
.|.+||.+..-.+.... + ........++|+| +|++|..+=..|.+.-|++
T Consensus 376 ~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 376 HISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 47788877544332221 1 0112244566766 5777777777787777765
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1e-11 Score=128.32 Aligned_cols=155 Identities=24% Similarity=0.480 Sum_probs=112.0
Q ss_pred EEEEEEecCCCEEEEEEC----------CCcEEEEEcCC-CeEEEEEec-CCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 002266 106 IRVLAFNKSGSMLAAAGD----------DEGIKLINTID-GSIARVLKG-HKGPVTGLAFDPNSEYLASI--DSIGTVIY 171 (945)
Q Consensus 106 V~~l~fspdg~~Lasgs~----------Dg~I~iwd~~~-~~~~~~l~~-h~~~V~~lafspdg~~Las~--s~Dg~I~i 171 (945)
-..+.|+++|.+|++-.. -+...+|.++. +.....+.- ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346789999988777544 12344444422 223333332 34679999999999987655 35679999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL---KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN 248 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~---dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd 248 (945)
||++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..++.++|||+
T Consensus 88 yd~~-~~~i~~~~---------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsPd 154 (194)
T PF08662_consen 88 YDVK-GKKIFSFG---------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSPD 154 (194)
T ss_pred EcCc-ccEeEeec---------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcCC
Confidence 9996 55555443 245678999999999999875 4679999999888887765 3 35789999999
Q ss_pred CCEEEEEEC------CCeEEEEECCCCeeeee
Q 002266 249 GKYMATSSL------DRQILIWDVGKKLDIDR 274 (945)
Q Consensus 249 g~~Lasgs~------Dg~I~IWD~~~~~~i~~ 274 (945)
|++|++++. |+.++||++.. +.+..
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G-~~l~~ 185 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQG-RLLYK 185 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecC-eEeEe
Confidence 999999874 78899999864 44443
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.3e-11 Score=143.70 Aligned_cols=219 Identities=17% Similarity=0.215 Sum_probs=146.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcC--CCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEE-EEcCCcEEEEE--
Q 002266 15 GNAASFCSILWDQQAHHLVTASSS--ETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS-GSIDHSVKLYK-- 89 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~--dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Las-gs~Dg~V~iwd-- 89 (945)
.+...+.+.+|+|||+.|+.++.. ...|++||+.++.. ..+....+.+.+.+|+|||+.|+. .+.+|...||.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 345778999999999999987633 34699999876632 223333455678999999988874 56677766665
Q ss_pred cCCCeeeeecccCCCCEEEEEEecCCCEEEEEEC-CCcEEEE--EcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 90 FPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD-DEGIKLI--NTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 90 l~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~iw--d~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
+.++. ...+..+........|+|||+.|+..+. ++...|| ++.++... .+..+.......+|+|+|++|+..+.+
T Consensus 271 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 271 ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEcc
Confidence 44444 4455555555677899999999887765 3555555 44444432 222233345568999999999877765
Q ss_pred C---cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEeecCCCCCCe
Q 002266 167 G---TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSLRGDHVQPI 240 (945)
Q Consensus 167 g---~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~~~~h~~~I 240 (945)
+ .|.+||+.++.... +... .....+.|+|+|+.|+..+.++ .+++.+.. +.....+.. +.+.+
T Consensus 349 ~g~~~I~v~d~~~g~~~~-lt~~--------~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~-~~g~~ 417 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTA-LTDT--------TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSV-QGGDV 417 (427)
T ss_pred CCcEEEEEEECCCCCeEE-ccCC--------CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeec-CCCCC
Confidence 4 59999998876432 2110 1124579999999998877544 46666774 555555543 55677
Q ss_pred EEEEEcCC
Q 002266 241 CFLSWSPN 248 (945)
Q Consensus 241 ~~l~fSpd 248 (945)
...+|+|-
T Consensus 418 ~~p~wsp~ 425 (427)
T PRK02889 418 REPSWGPF 425 (427)
T ss_pred CCCccCCC
Confidence 88888873
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.9e-11 Score=141.16 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=147.1
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCE
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD---EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~ 159 (945)
..|.+||... .....+..+...+...+|+|+|+.|+..+.. ..|++||+.++... .+..+.+...+++|+|+|+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 3688999754 4445566677789999999999999988743 36999999877653 33344555668899999997
Q ss_pred EE-EEeCCC--cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CC--eEEEEECCCCcEEEeec
Q 002266 160 LA-SIDSIG--TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KN--DVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 160 La-s~s~Dg--~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg--~I~vwD~~t~~~~~~~~ 233 (945)
|+ +.+.+| .|++||+.++.... +.. +......++|+|+|++|++.+. ++ .|+++++.+++......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTR-LTN-------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEE-Ccc-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec
Confidence 75 445555 59999998876432 221 1223356899999999888764 33 47778887765432222
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcC---CeEEEEec
Q 002266 234 GDHVQPICFLSWSPNGKYMATSSLDR---QILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVM---GKYGVWES 307 (945)
Q Consensus 234 ~~h~~~I~~l~fSpdg~~Lasgs~Dg---~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~D---G~I~iWd~ 307 (945)
+......++|||+|++|+..+.++ .|.+||+.++..... .+........|+|+|+.|+..+.+ +.|.+++.
T Consensus 334 --~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 334 --QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL-TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC-CCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 223445689999999998876443 699999988765533 233345677999999988876653 34666665
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=2.3e-12 Score=142.10 Aligned_cols=139 Identities=19% Similarity=0.308 Sum_probs=117.8
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc---------------------------cccccccccccceEEEEE
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPS---------------------------NLPKILRHHRDGVTALAL 69 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~---------------------------~~~~~l~~h~~~V~~la~ 69 (945)
...|+|+.|-|.++.++++...+|.+.+||..... ..........+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999888777777789999999642110 000011112457888999
Q ss_pred ecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEE
Q 002266 70 SPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149 (945)
Q Consensus 70 spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~ 149 (945)
+|||++||+.+.||.++||++.+.++...++..-+...|++|+|||++|++|++|.-|.||.+...+.+..-.+|+.+|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999888888877788999999999999999999999999999999999999999999999
Q ss_pred EEEEcc
Q 002266 150 GLAFDP 155 (945)
Q Consensus 150 ~lafsp 155 (945)
.++|+|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999998
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=1.5e-10 Score=131.18 Aligned_cols=253 Identities=13% Similarity=0.162 Sum_probs=165.6
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE-cCCcEEEEEcCCCeeeeec
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS-IDHSVKLYKFPGGEFQTNI 99 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs-~Dg~V~iwdl~~g~~~~~l 99 (945)
..+.|+|||+++++++ .||.|.++|+.+.. ....+.. .....++++++||+++++++ ..+.|.++|..+.+.+..+
T Consensus 40 ~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~-~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN-RDGTVSVIDLATGK-VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEE-TT-SSEEEEEE-TTSEEEEEETTSSS-EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred eEEEecCCCCEEEEEc-CCCeEEEEECCccc-EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 4467999999999987 89999999998875 4444444 34568899999999999876 5799999999999888776
Q ss_pred ccC-------CCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeEEE-EEecCCCCEEEEEEccCCCEEEEE-eCCCcE
Q 002266 100 TRF-------TLPIRVLAFNKSGSMLAAAGD-DEGIKLINTIDGSIAR-VLKGHKGPVTGLAFDPNSEYLASI-DSIGTV 169 (945)
Q Consensus 100 ~~~-------~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~-~l~~h~~~V~~lafspdg~~Las~-s~Dg~I 169 (945)
... ...+..+..++....+++.-. .+.|.+.|..+..... .............|+|++++++++ .....|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 532 345778888888886666655 4889999987654332 233345677899999999987664 455688
Q ss_pred EEEEccCCeeeeeecccC------------CCC-----------------CC-----C-------------CCCceEEEE
Q 002266 170 IYWELQSGRELHNLKRVA------------PDI-----------------GS-----D-------------PSSMNVLSW 202 (945)
Q Consensus 170 ~iwDl~t~~~i~~~~~~~------------~~~-----------------~~-----~-------------~~~i~~l~~ 202 (945)
.++|..+++.+..+.... +.. +. + .+.-.-+..
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t 276 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT 276 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE-
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec
Confidence 888888776554332100 000 00 0 011244677
Q ss_pred cCCCCEEEEE----eCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeeeecc
Q 002266 203 SPDGETLAVP----GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL--DRQILIWDVGKKLDIDRQK 276 (945)
Q Consensus 203 spdg~~La~g----s~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~--Dg~I~IWD~~~~~~i~~~~ 276 (945)
||+++++++. ...+.|.++|.++.+.+..+.......+..+.|+++|+++..+.. ++.|.|||..+.+.+.++.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999999997 345799999999998887775322345899999999997766544 3479999999999988765
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.4e-11 Score=128.89 Aligned_cols=248 Identities=14% Similarity=0.158 Sum_probs=187.3
Q ss_pred ccceEEEEEecCC--CEEEEEEcCCcEEEEEcCCCeeeeec------ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 002266 61 RDGVTALALSPNS--TCLASGSIDHSVKLYKFPGGEFQTNI------TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT 132 (945)
Q Consensus 61 ~~~V~~la~spdg--~~Lasgs~Dg~V~iwdl~~g~~~~~l------~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 132 (945)
...|..++|.-++ ..|..++.+-.+..+.+....+...+ .....+|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4578888888765 45555556667777777665544332 3345566666654 346788889999999998
Q ss_pred CCCe----EEEEEecCCCCEEEEEEccCCC-EEEEEeCC--CcEEEEEccCCeeeeeecccCCCCCCC--CCCceEEEEc
Q 002266 133 IDGS----IARVLKGHKGPVTGLAFDPNSE-YLASIDSI--GTVIYWELQSGRELHNLKRVAPDIGSD--PSSMNVLSWS 203 (945)
Q Consensus 133 ~~~~----~~~~l~~h~~~V~~lafspdg~-~Las~s~D--g~I~iwDl~t~~~i~~~~~~~~~~~~~--~~~i~~l~~s 203 (945)
..+. ....+..+ ..+..+.-++... ++++|+.. ..+.|||+...+.+..-+......-.- +-.++.+.|-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 7432 33344433 5667777777555 45568887 789999999987777666544332221 2345678888
Q ss_pred CC--CCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee--ccCC
Q 002266 204 PD--GETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR--QKFD 278 (945)
Q Consensus 204 pd--g~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~--~~~~ 278 (945)
+. ...|++++.-+.+++||.+.++ ++..+.- ...+|+++...|.|+++++|..-|.+..||+++++.+.. .+..
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 86 8899999999999999999775 4566654 678999999999999999999999999999999988776 4568
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 279 DRICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 279 ~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
+.|+++..+|.+++|++++-|..|+|+|+.+...
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 8999999999999999999999999999987443
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1e-10 Score=135.93 Aligned_cols=233 Identities=18% Similarity=0.229 Sum_probs=154.1
Q ss_pred CCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCC
Q 002266 39 ETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG 115 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg 115 (945)
...|.++|.... ....+..+...+...+|+|||++|+.++.. ..|++|++.+++... +..+...+.+++|+|+|
T Consensus 169 ~~~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 346778886432 244455566778999999999999987654 479999998876433 33455667789999999
Q ss_pred CEEEEEE-CCC--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeeeeeecccCCC
Q 002266 116 SMLAAAG-DDE--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IG--TVIYWELQSGRELHNLKRVAPD 189 (945)
Q Consensus 116 ~~Lasgs-~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg--~I~iwDl~t~~~i~~~~~~~~~ 189 (945)
+.|+... .++ .|++|++.++.. ..+..+........|+|+|++|+.++. ++ .|+++|+.+++... +..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---- 319 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---- 319 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec----
Confidence 9887543 333 588999987654 344445555667899999998876654 33 57778877665322 211
Q ss_pred CCCCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC---eEEE
Q 002266 190 IGSDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR---QILI 263 (945)
Q Consensus 190 ~~~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg---~I~I 263 (945)
.......+.|+|+|++|+.++.++ .|.+||+.++.... +.. . .......|+|+|++|+..+.++ .+++
T Consensus 320 ---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 320 ---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred ---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence 123345689999999999988765 79999998765432 222 1 2234568999999988877654 4566
Q ss_pred EECCCCeeeeeccCCCCeeEEEE
Q 002266 264 WDVGKKLDIDRQKFDDRICCMAW 286 (945)
Q Consensus 264 WD~~~~~~i~~~~~~~~V~~la~ 286 (945)
.+...............+..++|
T Consensus 394 ~~~~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 394 VSTDGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EECCCceeeECCCCCCCcCCCCC
Confidence 66544333222222334455544
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.7e-10 Score=133.85 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=153.2
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCE--E-EEEEcC--CcEEEEEcCCCeeeeecccCCCCEEEEEEecC
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTC--L-ASGSID--HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKS 114 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~--L-asgs~D--g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspd 114 (945)
..|.+.|.... ....+......+..-+|+|||+. + ++...+ ..|.+.++.+++.. .+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~--~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQ--NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCC--CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCC
Confidence 35667775433 23445445566788899999975 2 233333 45788888877643 34445566677899999
Q ss_pred CCEEEEEEC-CC--c--EEEEEcCCC---eEEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEE--ccC-Ceeeee
Q 002266 115 GSMLAAAGD-DE--G--IKLINTIDG---SIARVLKGHKGPVTGLAFDPNSEYLASID-SIGTVIYWE--LQS-GRELHN 182 (945)
Q Consensus 115 g~~Lasgs~-Dg--~--I~iwd~~~~---~~~~~l~~h~~~V~~lafspdg~~Las~s-~Dg~I~iwD--l~t-~~~i~~ 182 (945)
|+.|+..+. +| . +.+|++..+ ........+.......+|+|||+.|+..+ .+|...+|. +.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 999988764 22 2 344676642 32333333334456789999999877665 466555554 432 222222
Q ss_pred ecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC--
Q 002266 183 LKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK---NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL-- 257 (945)
Q Consensus 183 ~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d---g~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~-- 257 (945)
+. .....+....|+|||+.|+..+.+ ..|++||+.+++...... ....+....|+|||++|+..+.
T Consensus 322 lt-------~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 322 LT-------KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ec-------cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCC
Confidence 21 112344568999999999877543 469999999887643322 2345677999999998876543
Q ss_pred -CCeEEEEECCCCeeeeeccCCCCeeEEEEecCC
Q 002266 258 -DRQILIWDVGKKLDIDRQKFDDRICCMAWKPIG 290 (945)
Q Consensus 258 -Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg 290 (945)
...|++||+.+++..........+...+|+|-.
T Consensus 393 g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 393 NESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 357999999887766555455567788888753
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=2.2e-09 Score=121.43 Aligned_cols=266 Identities=17% Similarity=0.220 Sum_probs=173.9
Q ss_pred CeEEEEcCCCCccccccc--cccccceEEEEEecCCCEEEEEEc----CCcEEEEEcCC--Cee--eeecccCCCCEEEE
Q 002266 40 TTISIHDPLLPSNLPKIL--RHHRDGVTALALSPNSTCLASGSI----DHSVKLYKFPG--GEF--QTNITRFTLPIRVL 109 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l--~~h~~~V~~la~spdg~~Lasgs~----Dg~V~iwdl~~--g~~--~~~l~~~~~~V~~l 109 (945)
+.|.+|++.........+ .........|+++|++++|+++.. +|.|..|.+.. +.+ +............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 788888773322222111 123455678999999999999876 47899998865 333 23333345567789
Q ss_pred EEecCCCEEEEEEC-CCcEEEEEcCC-CeEEEE---Ee----------cCCCCEEEEEEccCCCEEEEEeC-CCcEEEEE
Q 002266 110 AFNKSGSMLAAAGD-DEGIKLINTID-GSIARV---LK----------GHKGPVTGLAFDPNSEYLASIDS-IGTVIYWE 173 (945)
Q Consensus 110 ~fspdg~~Lasgs~-Dg~I~iwd~~~-~~~~~~---l~----------~h~~~V~~lafspdg~~Las~s~-Dg~I~iwD 173 (945)
+++|++++|+++.. +|.|.++++.. +..... +. .......++.|+|++++++++.. ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 99999999999875 88999999987 443322 11 12345789999999998887654 34799999
Q ss_pred ccCCee-eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECC--CCc--EEEeecC---CC--CCCeEE
Q 002266 174 LQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRD--TAE--KLFSLRG---DH--VQPICF 242 (945)
Q Consensus 174 l~t~~~-i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~--t~~--~~~~~~~---~h--~~~I~~ 242 (945)
+..... +........ ......+.++|+|+|+++++... ++.|.+|++. ++. .+..+.. .. ......
T Consensus 173 ~~~~~~~l~~~~~~~~---~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKV---PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp E-TTS-TEEEEEEEEC---STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EeCCCceEEEeecccc---ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 977641 211111101 22345688999999998877654 7789999988 442 2222221 11 225788
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEECC--CCeee--eeccC-CCCeeEEEEecCCCEEEEEE-cCCeEEEEecC
Q 002266 243 LSWSPNGKYMATSS-LDRQILIWDVG--KKLDI--DRQKF-DDRICCMAWKPIGNALAVID-VMGKYGVWESV 308 (945)
Q Consensus 243 l~fSpdg~~Lasgs-~Dg~I~IWD~~--~~~~i--~~~~~-~~~V~~la~spdg~~Las~s-~DG~I~iWd~~ 308 (945)
++++|+|++|+++. ..+.|.+|+++ ++.+. ..... ......++++|+|++|+++. .++.|.+|++.
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99999999988776 46789999993 33332 22332 44589999999999988877 55789999864
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.9e-10 Score=134.28 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=156.4
Q ss_pred eEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCE
Q 002266 41 TISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM 117 (945)
Q Consensus 41 ~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~ 117 (945)
.|.++|.... ....+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++.. .+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~--~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGA--RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCC--CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCE
Confidence 4777776533 244555667789999999999999876643 46899999887643 34444555667899999998
Q ss_pred EEEE-ECCC--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeeeeeecccCCCCC
Q 002266 118 LAAA-GDDE--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IG--TVIYWELQSGRELHNLKRVAPDIG 191 (945)
Q Consensus 118 Lasg-s~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg--~I~iwDl~t~~~i~~~~~~~~~~~ 191 (945)
|+.. ..++ .|++||+.++... .+..+........|+|+|+.|+..+. +| .|+++++.+++... +...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~----- 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV----- 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-----
Confidence 8754 3444 5888899877643 45556566777899999998776653 33 57777877765432 2110
Q ss_pred CCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEE
Q 002266 192 SDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLD---RQILIWD 265 (945)
Q Consensus 192 ~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D---g~I~IWD 265 (945)
........|+|+|++|+..+..+ .|.+||+.+++... +.. ........|+|+|++|+..+.+ ..|.+++
T Consensus 330 --~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 330 --GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred --CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 11123478999999998876532 58899998876533 222 1122356899999998877653 3577778
Q ss_pred CCCCeeeeeccCCCCeeEEEEecC
Q 002266 266 VGKKLDIDRQKFDDRICCMAWKPI 289 (945)
Q Consensus 266 ~~~~~~i~~~~~~~~V~~la~spd 289 (945)
+............+.+...+|+|-
T Consensus 405 ~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 405 INGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCCceEECcCCCCCcCCCccCCC
Confidence 865444333333456777778763
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=5.3e-11 Score=122.94 Aligned_cols=157 Identities=18% Similarity=0.284 Sum_probs=115.0
Q ss_pred EEEEECCCCCEEEEEEcC---------CCeEEEEcCCCCccccccccc-cccceEEEEEecCCCEEEEE--EcCCcEEEE
Q 002266 21 CSILWDQQAHHLVTASSS---------ETTISIHDPLLPSNLPKILRH-HRDGVTALALSPNSTCLASG--SIDHSVKLY 88 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~---------dg~V~IWd~~~~~~~~~~l~~-h~~~V~~la~spdg~~Lasg--s~Dg~V~iw 88 (945)
..+.|+|+|++|++-... -+...||.+.........+.. ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999998876531 134555555333333333332 34579999999999987654 356799999
Q ss_pred EcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002266 89 KFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD---EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 89 dl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~ 165 (945)
|+. ++.+..+. ...+..+.|+|+|++|++|+.+ |.|.+||+++.+.+.... | ..+..++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55555543 5678899999999999998754 569999999888877665 3 35789999999999998864
Q ss_pred ------CCcEEEEEccCCeeeeee
Q 002266 166 ------IGTVIYWELQSGRELHNL 183 (945)
Q Consensus 166 ------Dg~I~iwDl~t~~~i~~~ 183 (945)
|..++||+. .|+.+...
T Consensus 164 ~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEe-cCeEeEec
Confidence 678999998 45555443
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.2e-10 Score=134.01 Aligned_cols=233 Identities=18% Similarity=0.163 Sum_probs=151.4
Q ss_pred eEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCE
Q 002266 41 TISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM 117 (945)
Q Consensus 41 ~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~ 117 (945)
.|.++|.... ....+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++.. .+..........+|+|||+.
T Consensus 199 ~l~i~d~dG~--~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGY--NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCC--CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCE
Confidence 5666775433 234455567789999999999998876543 35888898877643 23333444557899999998
Q ss_pred EEEE-ECCCc--EEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeeeeeecccCCCCC
Q 002266 118 LAAA-GDDEG--IKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IG--TVIYWELQSGRELHNLKRVAPDIG 191 (945)
Q Consensus 118 Lasg-s~Dg~--I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg--~I~iwDl~t~~~i~~~~~~~~~~~ 191 (945)
|+.. +.++. |+++|+.+++. ..+..+.......+|+|+|++|+..+. +| .|+++|+.+++... +...
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~----- 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE----- 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-----
Confidence 8764 55564 88889877764 344455566778999999998876553 34 46666776665432 2110
Q ss_pred CCCCCceEEEEcCCCCEEEEEeCC-C--eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEE
Q 002266 192 SDPSSMNVLSWSPDGETLAVPGLK-N--DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLD-R--QILIWD 265 (945)
Q Consensus 192 ~~~~~i~~l~~spdg~~La~gs~d-g--~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D-g--~I~IWD 265 (945)
.......+|+|+|++|+..+.+ + .|.++|+.+++... +.. . .......|+|+|++|+..+.+ | .|++++
T Consensus 349 --g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 349 --GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred --CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 1112346899999999887653 3 56778888776533 222 1 122245899999988776543 3 477788
Q ss_pred CCCCeeeeeccCCCCeeEEEEec
Q 002266 266 VGKKLDIDRQKFDDRICCMAWKP 288 (945)
Q Consensus 266 ~~~~~~i~~~~~~~~V~~la~sp 288 (945)
.............+.+...+|+|
T Consensus 424 ~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 424 IDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCceEECcCCCCCcCCCccCC
Confidence 75443333333345677888887
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.1e-10 Score=129.86 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=174.2
Q ss_pred ccccceEEEEEecCCCEEE-EEEcCCcEEEEEcCCCeeeeecccC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 002266 59 HHRDGVTALALSPNSTCLA-SGSIDHSVKLYKFPGGEFQTNITRF--TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG 135 (945)
Q Consensus 59 ~h~~~V~~la~spdg~~La-sgs~Dg~V~iwdl~~g~~~~~l~~~--~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~ 135 (945)
.|....+.|..+|||+|++ +|...-.|++||+.+..+ .+.+| ...|.-.-++.|-..++.-..|..|-+..- -|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence 3667788999999998765 567788999999976553 23333 334555556666666666667777765432 12
Q ss_pred eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d 215 (945)
. ...++ -...-.+++++.-..-|++++....|+-+++..|..+..+.. ....++++..++...+|++|+.+
T Consensus 126 ~-hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-------~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 126 R-HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-------DSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred e-eeeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-------ccccceeeeecCccceEEecccC
Confidence 1 11222 123345677765444455555566799999999987776653 23678899999988999999999
Q ss_pred CeEEEEECCCCcEEEeecC-----CCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC--CCCeeE
Q 002266 216 NDVVMYDRDTAEKLFSLRG-----DHVQ-----PICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF--DDRICC 283 (945)
Q Consensus 216 g~I~vwD~~t~~~~~~~~~-----~h~~-----~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~--~~~V~~ 283 (945)
|.|..||.++...+..+.. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++....| .-+|..
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence 9999999998766554432 1223 499999999999999999999999999999999888766 457899
Q ss_pred EEEecCC--CEEEEEEcCCeEEEEecCCCCCC
Q 002266 284 MAWKPIG--NALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 284 la~spdg--~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
+.|.+.+ +.|++. ....++|||-.++..+
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPM 307 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCce
Confidence 9998763 344443 4457899998887764
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=4.2e-09 Score=119.15 Aligned_cols=267 Identities=14% Similarity=0.219 Sum_probs=173.6
Q ss_pred CCEEEEEECCCCCEEEEEEc---CCCeEEEEcCCCC-ccc--cccccccccceEEEEEecCCCEEEEEEc-CCcEEEEEc
Q 002266 18 ASFCSILWDQQAHHLVTASS---SETTISIHDPLLP-SNL--PKILRHHRDGVTALALSPNSTCLASGSI-DHSVKLYKF 90 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~---~dg~V~IWd~~~~-~~~--~~~l~~h~~~V~~la~spdg~~Lasgs~-Dg~V~iwdl 90 (945)
.....++++|++++|+++.. ..+.|..|.+... ..+ .............++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34556789999999999874 3689999887654 221 1122223445678999999999999875 799999999
Q ss_pred CC-Ceeeee---c----------ccCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCe--EE--EEEe-cCCCCEEE
Q 002266 91 PG-GEFQTN---I----------TRFTLPIRVLAFNKSGSMLAAAGD-DEGIKLINTIDGS--IA--RVLK-GHKGPVTG 150 (945)
Q Consensus 91 ~~-g~~~~~---l----------~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~--~~--~~l~-~h~~~V~~ 150 (945)
.. |..... + ........++.|+|+|+++++... ...|.+|++.... .. ..+. ......+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 443322 1 112345789999999999888753 3469999987654 32 2222 34456799
Q ss_pred EEEccCCCEEEEEe-CCCcEEEEEcc--CCe--eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 002266 151 LAFDPNSEYLASID-SIGTVIYWELQ--SGR--ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRD 224 (945)
Q Consensus 151 lafspdg~~Las~s-~Dg~I~iwDl~--t~~--~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~ 224 (945)
++|+|+++++++.. .++.|.+|++. .+. .+..+...... .........++++|+|++|+++.. .+.|.+|++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 99999999886654 46789999998 442 22233222111 111225678999999999988764 5689999984
Q ss_pred --CCc--EEEeecCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEC--CCCeeeeecc--CCCCeeEEEE
Q 002266 225 --TAE--KLFSLRGDHVQPICFLSWSPNGKYMATSSL-DRQILIWDV--GKKLDIDRQK--FDDRICCMAW 286 (945)
Q Consensus 225 --t~~--~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~-Dg~I~IWD~--~~~~~i~~~~--~~~~V~~la~ 286 (945)
++. .+..+.. .......++++|+|++|+++.. ++.|.+|++ .++.+..... .-....|+.|
T Consensus 276 ~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 233 2333332 2345789999999999998874 678999976 5666554421 2344566655
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.7e-10 Score=127.15 Aligned_cols=279 Identities=15% Similarity=0.218 Sum_probs=189.2
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE-----cC-----CcEEE
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS-----ID-----HSVKL 87 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs-----~D-----g~V~i 87 (945)
..++..++|++|++++.+ .+..++|++...... . +......++++.|+|-|.+|.+-- .+ -.+.+
T Consensus 35 ~~~~v~~~S~~G~lfA~~--~~~~v~i~~~~~~~~-~--lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS--DNQVVKVFEIATLKV-V--LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CcceeEEEcCCCcEEEEE--cCCeEEEEEccCCcE-E--EEeccceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 346677899999999887 477899999876642 2 222223789999999999987531 12 34779
Q ss_pred EEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC--EEEE---
Q 002266 88 YKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE--YLAS--- 162 (945)
Q Consensus 88 wdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~--~Las--- 162 (945)
|++.++.....+......-+++.|+.|..+. +--..+.+++|++...... .-.-|...|..+.++|.+. .+|+
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEcc
Confidence 9998865554444333333688999886543 3334567999998764322 2223567788888888643 3332
Q ss_pred --EeCCCcEEEEEccCCe---------------e----------eeee---------------------ccc--CCCC-C
Q 002266 163 --IDSIGTVIYWELQSGR---------------E----------LHNL---------------------KRV--APDI-G 191 (945)
Q Consensus 163 --~s~Dg~I~iwDl~t~~---------------~----------i~~~---------------------~~~--~~~~-~ 191 (945)
.+.-+.|+||...... . +..+ ... .... .
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 2334467777654110 0 0000 000 0000 0
Q ss_pred CCCCCceEEEEcCCCCEEEE--EeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEEC
Q 002266 192 SDPSSMNVLSWSPDGETLAV--PGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL---DRQILIWDV 266 (945)
Q Consensus 192 ~~~~~i~~l~~spdg~~La~--gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~---Dg~I~IWD~ 266 (945)
...++|.+++|+|+|+-+++ |-.-..+.|||++ +.+++.+.. ++=+++-|+|.|++|+.++- -|.|-|||+
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC---CCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 12478999999999987765 4556789999997 778888754 67788999999999988875 489999999
Q ss_pred CCCeeeeeccCCCCeeEEEEecCCCEEEEEEc------CCeEEEEecC
Q 002266 267 GKKLDIDRQKFDDRICCMAWKPIGNALAVIDV------MGKYGVWESV 308 (945)
Q Consensus 267 ~~~~~i~~~~~~~~V~~la~spdg~~Las~s~------DG~I~iWd~~ 308 (945)
.+.+.+....... -+-+.|+|||+++++++. |+.++||+..
T Consensus 344 ~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9988888766543 455789999999998764 6779999864
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.5e-10 Score=121.81 Aligned_cols=248 Identities=16% Similarity=0.200 Sum_probs=167.5
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcc----cccccccc------------ccceEEEEEecCC--CEEEEE
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSN----LPKILRHH------------RDGVTALALSPNS--TCLASG 79 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~----~~~~l~~h------------~~~V~~la~spdg--~~Lasg 79 (945)
.-|.+|.|...|.+|+||. .+|.|.++.-..... ....+..| ...|..+.|.+++ ..++..
T Consensus 26 diis~vef~~~Ge~LatGd-kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGD-KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeecccceEeecC-CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 5689999999999999986 899999986432221 12223333 2468899999865 456667
Q ss_pred EcCCcEEEEEcCCCeeee--------------------e----------------cccCCCCEEEEEEecCCCEEEEEEC
Q 002266 80 SIDHSVKLYKFPGGEFQT--------------------N----------------ITRFTLPIRVLAFNKSGSMLAAAGD 123 (945)
Q Consensus 80 s~Dg~V~iwdl~~g~~~~--------------------~----------------l~~~~~~V~~l~fspdg~~Lasgs~ 123 (945)
+.|.+|++|.+....... . -..|+-.|.+|.++.|+..++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 889999999875321100 0 02355568899999998888876 6
Q ss_pred CCcEEEEEcCCCeE---EEEEecC-----CCCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCeeee----eecccCCC-
Q 002266 124 DEGIKLINTIDGSI---ARVLKGH-----KGPVTGLAFDPN-SEYLASIDSIGTVIYWELQSGRELH----NLKRVAPD- 189 (945)
Q Consensus 124 Dg~I~iwd~~~~~~---~~~l~~h-----~~~V~~lafspd-g~~Las~s~Dg~I~iwDl~t~~~i~----~~~~~~~~- 189 (945)
|-.|-+|+++-... +..++.+ ..-|++..|+|. .+.++-++..|+|++.|++.....- .+..+...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 77899999864321 2223333 346889999994 5678888889999999998542211 11110000
Q ss_pred ----CCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEeecCCCC------------CC---eEEEEEcCCC
Q 002266 190 ----IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD-TAEKLFSLRGDHV------------QP---ICFLSWSPNG 249 (945)
Q Consensus 190 ----~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~-t~~~~~~~~~~h~------------~~---I~~l~fSpdg 249 (945)
+...-..|..+.|+++|+|+++-. =-+|++||+. ..+++.++.- |. .. -..++|+-++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 001124577899999999999853 3689999994 3445444432 21 12 2457899999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q 002266 250 KYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 250 ~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.+++||+....+++|++..+
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 99999999999999996443
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=3.6e-09 Score=117.65 Aligned_cols=278 Identities=7% Similarity=0.003 Sum_probs=178.6
Q ss_pred CCCEEEEEEcC----CCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc----------CCcEEEEEcCCC
Q 002266 28 QAHHLVTASSS----ETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI----------DHSVKLYKFPGG 93 (945)
Q Consensus 28 dg~~L~t~g~~----dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~----------Dg~V~iwdl~~g 93 (945)
++.++++.... .++|.+.|..+.. ....+.....+ ..+ ++|||+.|+++.. +..|.+||..++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~-v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGR-VLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCE-EEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 45555555322 2789999988763 33444332222 234 8999998887765 689999999999
Q ss_pred eeeeecccCC-------CCEEEEEEecCCCEEEEEE-C-CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002266 94 EFQTNITRFT-------LPIRVLAFNKSGSMLAAAG-D-DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASID 164 (945)
Q Consensus 94 ~~~~~l~~~~-------~~V~~l~fspdg~~Lasgs-~-Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s 164 (945)
+.+..+.-.. .....++++|||++|++.. . +..|.++|+.+++.+..+... +...-+..+.+..+ +.+
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~ 164 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHC 164 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEe
Confidence 9887776322 2234789999999999876 3 688999999999988877642 22222223322222 223
Q ss_pred CCCcEEEEEccCCeeeeeecccCCCCCCCCCCc-eEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----cEEEeec----
Q 002266 165 SIGTVIYWELQSGRELHNLKRVAPDIGSDPSSM-NVLSWSP-DGETLAVPGLKNDVVMYDRDTA-----EKLFSLR---- 233 (945)
Q Consensus 165 ~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i-~~l~~sp-dg~~La~gs~dg~I~vwD~~t~-----~~~~~~~---- 233 (945)
.||......+........... +.+.....++ ..-.|.+ +|+++++... |.|++.|+... .....+.
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~--~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPT--EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred ecCceEEEEecCCCceEEeee--eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc
Confidence 455555544433211111110 0000000000 0114455 8888888765 99999996432 2222221
Q ss_pred --CCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCC-EEEEEE-cC
Q 002266 234 --GDHVQPICFLSWSPNGKYMATSS----------LDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGN-ALAVID-VM 299 (945)
Q Consensus 234 --~~h~~~I~~l~fSpdg~~Lasgs----------~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~-~Las~s-~D 299 (945)
+-..+.+.-++++|+|+.++... ..+.|.++|..+++.+..+.....+.+++++||++ .|++.. .+
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC
Confidence 11234445599999999887743 12579999999999999988888999999999999 777666 57
Q ss_pred CeEEEEecCCCCCCC
Q 002266 300 GKYGVWESVVPSSMK 314 (945)
Q Consensus 300 G~I~iWd~~~~~~~~ 314 (945)
+.|.+.|......+.
T Consensus 322 ~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 322 KTLYIFDAETGKELS 336 (352)
T ss_pred CcEEEEECcCCeEEe
Confidence 889999987766543
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=6.5e-10 Score=129.17 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=142.9
Q ss_pred cEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEE
Q 002266 84 SVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD---EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYL 160 (945)
Q Consensus 84 ~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~L 160 (945)
.|.++|...+. ...+..+...+....|+|+|++|+.++.. ..|++||+.++.... +..+.+.+.+++|+|+|+.|
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 57888875443 44555566678899999999999988754 479999998876443 33455667789999999977
Q ss_pred EEE-eCCC--cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEeecC
Q 002266 161 ASI-DSIG--TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK---NDVVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 161 as~-s~Dg--~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d---g~I~vwD~~t~~~~~~~~~ 234 (945)
+.. +.++ .|++||+.++.... +.. +........|+|+|+.|+..+.. ..|+++|+.+++... +..
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~-------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~ 319 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTR-LTN-------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF 319 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEE-CCC-------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec
Confidence 644 4444 58888988765332 211 11223457899999988876543 268888988766432 322
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCC
Q 002266 235 DHVQPICFLSWSPNGKYMATSSLDR---QILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMG 300 (945)
Q Consensus 235 ~h~~~I~~l~fSpdg~~Lasgs~Dg---~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG 300 (945)
+...+..+.|+|+|++|+.++.++ .|.+||+.++....... ........|+|+|+.|++.+.++
T Consensus 320 -~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 320 -RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-CCCCCCceECCCCCEEEEEEeCC
Confidence 345567789999999999988776 89999998765433322 22345678999999888877655
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2.9e-10 Score=128.56 Aligned_cols=283 Identities=14% Similarity=0.183 Sum_probs=200.6
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc--------------cccccccccccceEEEEEecCCCEEEEEEc
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS--------------NLPKILRHHRDGVTALALSPNSTCLASGSI 81 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~--------------~~~~~l~~h~~~V~~la~spdg~~Lasgs~ 81 (945)
.+....|+.|+....+|+++| .||.++|..+.+.. ..-+++.+|...|..+.|+.+.+.|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG-~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGG-ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEecc-ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 346789999999999999987 99999998754322 112467899999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeeec--ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEE-EEEecCCCCEEEEEEccCCC
Q 002266 82 DHSVKLYKFPGGEFQTNI--TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIA-RVLKGHKGPVTGLAFDPNSE 158 (945)
Q Consensus 82 Dg~V~iwdl~~g~~~~~l--~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~-~~l~~h~~~V~~lafspdg~ 158 (945)
+|.|.+|-+-.|.-.... .+....|.+++|+.+|..|+....||.|.|=.+.....- ..+++ .....+.|++|.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 999999998877643322 345678999999999999999999999988776543321 12222 2345789999999
Q ss_pred EEEEEeCCCcEEEEEccCCe-------eeeeecccCCCCCCCCCCceEEEEc--------CCCCEEEEEeCCCeEEEEEC
Q 002266 159 YLASIDSIGTVIYWELQSGR-------ELHNLKRVAPDIGSDPSSMNVLSWS--------PDGETLAVPGLKNDVVMYDR 223 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~-------~i~~~~~~~~~~~~~~~~i~~l~~s--------pdg~~La~gs~dg~I~vwD~ 223 (945)
.++.+-.+|.+.+||....- +..... ..+...+..+..+.|. |+-..|+++..+|.+.+..-
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t---g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGT---GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeee---eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 99989899999999975421 111111 1111222335556663 47778999999999988765
Q ss_pred CCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC---------eEEEEECCCCeeeeecc-CCCCeeEEEEecCCCEE
Q 002266 224 DTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR---------QILIWDVGKKLDIDRQK-FDDRICCMAWKPIGNAL 293 (945)
Q Consensus 224 ~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg---------~I~IWD~~~~~~i~~~~-~~~~V~~la~spdg~~L 293 (945)
.+......+.. .-.|....|+++|..||.++.+. .|.+|..- |..+...+ ....|++++|-..|-.+
T Consensus 247 eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLri 323 (1189)
T KOG2041|consen 247 ENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRI 323 (1189)
T ss_pred cCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEE
Confidence 54443333332 36788899999999999998652 44554432 33444433 35679999999888666
Q ss_pred EEEEcCCeEEEEecC
Q 002266 294 AVIDVMGKYGVWESV 308 (945)
Q Consensus 294 as~s~DG~I~iWd~~ 308 (945)
|.+ .|+.|++=++.
T Consensus 324 A~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 324 AIA-VDSFIYFANIR 337 (1189)
T ss_pred EEE-ecceEEEEeec
Confidence 654 56667665543
No 248
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=6.4e-11 Score=129.60 Aligned_cols=256 Identities=18% Similarity=0.271 Sum_probs=187.1
Q ss_pred ccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec-ccCCCCEEEEEEec--CCCEEEEEECCCcEEEEE
Q 002266 55 KILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI-TRFTLPIRVLAFNK--SGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l-~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~iwd 131 (945)
..+..|.+.|..+.|+..|..|++|+.|..|.+||+..+.....+ .+|...|....|.| +...+++++.||.|++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 346679999999999999999999999999999999887765544 46777787778887 446799999999999876
Q ss_pred cCCCe-E--EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-C
Q 002266 132 TIDGS-I--ARVLKGHKGPVTGLAFDPNS-EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD-G 206 (945)
Q Consensus 132 ~~~~~-~--~~~l~~h~~~V~~lafspdg-~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd-g 206 (945)
+.... + ...+..|.++|.-++..|+. .-|.+++.|+.+.-+|++.+.....+....... ...-..+.++..|. .
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~-~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE-KERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC-ccceeeeeEecCCCCc
Confidence 64332 2 34566799999999999965 468899999999999999876554443211111 01124678899994 4
Q ss_pred CEEEEEeCCCeEEEEECCCCcE------EEeecC-----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----
Q 002266 207 ETLAVPGLKNDVVMYDRDTAEK------LFSLRG-----DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLD---- 271 (945)
Q Consensus 207 ~~La~gs~dg~I~vwD~~t~~~------~~~~~~-----~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~---- 271 (945)
..+++++.|..+++||.+.... +..+.. .....|++++|+.++.-|.++-.|-.|++|.-.-+.-
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 5899999999999999875321 222222 2345799999998776666666688899995432211
Q ss_pred --------eee--ccC--CCCeeEEE-EecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 272 --------IDR--QKF--DDRICCMA-WKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 272 --------i~~--~~~--~~~V~~la-~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
+.. .+| ...|.++- |-|...++++|+.=|.|.||+-..+.
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 111 234 24577776 57888999999999999999955443
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.9e-08 Score=107.84 Aligned_cols=266 Identities=17% Similarity=0.189 Sum_probs=181.7
Q ss_pred CCeEEEEcCCCCcccc--ccccccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCC--Ceee--eecccCCCCEEEE
Q 002266 39 ETTISIHDPLLPSNLP--KILRHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPG--GEFQ--TNITRFTLPIRVL 109 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~--~~l~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~--g~~~--~~l~~~~~~V~~l 109 (945)
+.-|.+|++.+..... ..+-.+.+.++-|+|+|++++|.++..+ |.|..|.+.. |.+. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 6789999987443222 2233567788999999999999988654 7788887764 5432 2222233445889
Q ss_pred EEecCCCEEEEEEC-CCcEEEEEcCC-CeEEE--EEecCCCC----------EEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 002266 110 AFNKSGSMLAAAGD-DEGIKLINTID-GSIAR--VLKGHKGP----------VTGLAFDPNSEYLASIDS-IGTVIYWEL 174 (945)
Q Consensus 110 ~fspdg~~Lasgs~-Dg~I~iwd~~~-~~~~~--~l~~h~~~----------V~~lafspdg~~Las~s~-Dg~I~iwDl 174 (945)
+++++|++++++.. .|.|.++-++. |.+.. .+..|.+. +....+.|++++|++++- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999875 57899998865 43221 22335555 888999999999988754 236999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCCC--c--EEEe---ecCC--CCCCeEEEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDTA--E--KLFS---LRGD--HVQPICFLS 244 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t~--~--~~~~---~~~~--h~~~I~~l~ 244 (945)
..+.....-.... ......+.|.|||++++..+.+. +++|.+|..... + .+.. ++.. .......+.
T Consensus 175 ~dg~L~~~~~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 175 DDGKLTPADPAEV----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred ccCcccccccccc----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9775433222111 22345678999999998877654 889999998763 2 2222 2221 234567789
Q ss_pred EcCCCCEEEEEEC-CCeEEEEECCC--Ceeeee--c-cCCCCeeEEEEecCCCEEEEEEcCC-eEEEEecC
Q 002266 245 WSPNGKYMATSSL-DRQILIWDVGK--KLDIDR--Q-KFDDRICCMAWKPIGNALAVIDVMG-KYGVWESV 308 (945)
Q Consensus 245 fSpdg~~Lasgs~-Dg~I~IWD~~~--~~~i~~--~-~~~~~V~~la~spdg~~Las~s~DG-~I~iWd~~ 308 (945)
.+|||++|.++.. ...|.+|.+.. +++... . .+......+.++++|++|+++..++ .|.+|...
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 9999999998854 34788888754 332222 2 2334478999999999998887664 68888654
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.3e-09 Score=126.69 Aligned_cols=220 Identities=16% Similarity=0.153 Sum_probs=139.2
Q ss_pred CCEEEEEECCCCCEEE--EEEcCC--CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc-CC----cEEEE
Q 002266 18 ASFCSILWDQQAHHLV--TASSSE--TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI-DH----SVKLY 88 (945)
Q Consensus 18 ~~V~svafspdg~~L~--t~g~~d--g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~-Dg----~V~iw 88 (945)
..+.+-+|||||+.++ ..+..+ ..|.+.++..+. ...+....+.....+|+|||+.|+..+. +| .+.+|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 4456678999998633 233344 356777776543 3333434555667899999998887653 22 33446
Q ss_pred EcCCC---eeeeecccCCCCEEEEEEecCCCEEEEEEC-CCc--EEEEEcCC-CeEEEEEecCCCCEEEEEEccCCCEEE
Q 002266 89 KFPGG---EFQTNITRFTLPIRVLAFNKSGSMLAAAGD-DEG--IKLINTID-GSIARVLKGHKGPVTGLAFDPNSEYLA 161 (945)
Q Consensus 89 dl~~g---~~~~~l~~~~~~V~~l~fspdg~~Lasgs~-Dg~--I~iwd~~~-~~~~~~l~~h~~~V~~lafspdg~~La 161 (945)
++..+ ................+|+|||+.|+..+. +|. |+++++.. +.....+..+...+....|+|+|+.|+
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 66542 322222222234467899999998887764 554 44455542 233444555556778899999999888
Q ss_pred EEeCC---CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEeecCC
Q 002266 162 SIDSI---GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL---KNDVVMYDRDTAEKLFSLRGD 235 (945)
Q Consensus 162 s~s~D---g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~---dg~I~vwD~~t~~~~~~~~~~ 235 (945)
..+.+ ..|.+||+.+++....... ...+....|+|||+.|+..+. ...|+++|+.+++......
T Consensus 343 f~~~~~g~~~I~v~dl~~g~~~~Lt~~--------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-- 412 (428)
T PRK01029 343 FCSVIKGVRQICVYDLATGRDYQLTTS--------PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-- 412 (428)
T ss_pred EEEcCCCCcEEEEEECCCCCeEEccCC--------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--
Confidence 76543 3699999988765332211 123456899999998886543 3579999998776544333
Q ss_pred CCCCeEEEEEcCCC
Q 002266 236 HVQPICFLSWSPNG 249 (945)
Q Consensus 236 h~~~I~~l~fSpdg 249 (945)
..+.+...+|+|-.
T Consensus 413 ~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCcccCceecCCC
Confidence 34556778898853
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.8e-09 Score=119.96 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=187.5
Q ss_pred ccccCCCCCEEEEEECCCCCEEEEEEc----------CCCeEEEEcCCCCccccccccc--cccc-eEEEEEecCCCEEE
Q 002266 11 AHKCGNAASFCSILWDQQAHHLVTASS----------SETTISIHDPLLPSNLPKILRH--HRDG-VTALALSPNSTCLA 77 (945)
Q Consensus 11 aH~~gh~~~V~svafspdg~~L~t~g~----------~dg~V~IWd~~~~~~~~~~l~~--h~~~-V~~la~spdg~~La 77 (945)
.|++.| ..|.-+.|||..+||+|-+. ....++|||+.++. +...+.. .... -.-..||.|++++|
T Consensus 244 ~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~A 321 (698)
T KOG2314|consen 244 IQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFA 321 (698)
T ss_pred HHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc-hhcceeccCCCccccceEEeccCCceeE
Confidence 344445 56899999999999999752 23689999999884 3444333 1122 23568999999999
Q ss_pred EEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeEEEEEecCCCCEEEEE
Q 002266 78 SGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD-----EGIKLINTIDGSIARVLKGHKGPVTGLA 152 (945)
Q Consensus 78 sgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~~~~~~~l~~h~~~V~~la 152 (945)
.-.. ..|.||+..+-.++..-.-.-..|....|+|.+..||.-+.. ..+.+..+.+++.+++-.-|.-.=..+-
T Consensus 322 rm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh 400 (698)
T KOG2314|consen 322 RMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH 400 (698)
T ss_pred Eecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence 8766 469999977644433222234578899999999988876432 3477778877777776655554445677
Q ss_pred EccCCCEEEEEeC-------CC---cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC---CCeEE
Q 002266 153 FDPNSEYLASIDS-------IG---TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL---KNDVV 219 (945)
Q Consensus 153 fspdg~~Las~s~-------Dg---~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~---dg~I~ 219 (945)
|-.+|.+|+.--. .| .+-|+.++......... .-...+...+|-|.|..+++-+. ..++.
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-------elke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-------ELKESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-------ecchheeeeeeccCCCeEEEEEcccccccee
Confidence 8888888875321 11 34455544432211110 11345778999999988877543 35788
Q ss_pred EEECCC-C---cEEEeecCCCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCC--CeeeeeccCCCCeeEEEEecCC
Q 002266 220 MYDRDT-A---EKLFSLRGDHVQPICFLSWSPNGKYMATSS---LDRQILIWDVGK--KLDIDRQKFDDRICCMAWKPIG 290 (945)
Q Consensus 220 vwD~~t-~---~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs---~Dg~I~IWD~~~--~~~i~~~~~~~~V~~la~spdg 290 (945)
+|...+ . +.+..+. ....+.+.|+|.|++++.+. ..|.+.++|+.- -+.+....| ...+.+.|.|.|
T Consensus 474 fY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtG 549 (698)
T KOG2314|consen 474 FYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTG 549 (698)
T ss_pred EEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCC
Confidence 888773 2 2233333 25677899999999998764 468899999884 333333344 356789999999
Q ss_pred CEEEEEEcC------CeEEEEec
Q 002266 291 NALAVIDVM------GKYGVWES 307 (945)
Q Consensus 291 ~~Las~s~D------G~I~iWd~ 307 (945)
+++++++.- .-.++|+.
T Consensus 550 RYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 550 RYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred CEEEEeeehhhhccccceEEEEe
Confidence 999998753 33566664
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1e-09 Score=128.21 Aligned_cols=218 Identities=18% Similarity=0.159 Sum_probs=145.6
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCC--CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEE-EEcCC--cEEEEEc
Q 002266 16 NAASFCSILWDQQAHHLVTASSSE--TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS-GSIDH--SVKLYKF 90 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~d--g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Las-gs~Dg--~V~iwdl 90 (945)
+...+.+.+|+|||+.|+.++..+ ..|.+|++.++.. ..+....+.+...+|+|||+.|+. .+.+| .|++||+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 446788999999999998876333 4688899876532 223333345567899999998874 44444 6888899
Q ss_pred CCCeeeeecccCCCCEEEEEEecCCCEEEEEECC-C--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC-
Q 002266 91 PGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD-E--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI- 166 (945)
Q Consensus 91 ~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D-g--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D- 166 (945)
.++... .+..+........|+|+|+.|+..+.. + .|+++++.+++.... ...........|+|+|++|+..+.+
T Consensus 275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccC
Confidence 887643 455555556678999999988877653 2 578888877764332 2222334567899999998877653
Q ss_pred C--cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEeecCCCCCCeE
Q 002266 167 G--TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK---NDVVMYDRDTAEKLFSLRGDHVQPIC 241 (945)
Q Consensus 167 g--~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d---g~I~vwD~~t~~~~~~~~~~h~~~I~ 241 (945)
+ .|.+||+.++... .+... .......|+|+|+.++..+.+ ..|++++.. +.....+.. +.+.+.
T Consensus 353 ~~~~l~~~dl~tg~~~-~lt~~--------~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~-~~g~~~ 421 (430)
T PRK00178 353 GNFHVAAQDLQRGSVR-ILTDT--------SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT-AQGEVR 421 (430)
T ss_pred CceEEEEEECCCCCEE-EccCC--------CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC-CCCCcC
Confidence 3 5888998877542 22211 011235899999999887654 357788875 344444443 445677
Q ss_pred EEEEcCC
Q 002266 242 FLSWSPN 248 (945)
Q Consensus 242 ~l~fSpd 248 (945)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 7788873
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=8e-10 Score=129.25 Aligned_cols=215 Identities=18% Similarity=0.186 Sum_probs=140.6
Q ss_pred CCEEEEEECCCCCEEEEEEcCCC--eEEEEcCCCCccccccccccccceEEEEEecCCCEEEE-EEcCCc--EEEEEcCC
Q 002266 18 ASFCSILWDQQAHHLVTASSSET--TISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS-GSIDHS--VKLYKFPG 92 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg--~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Las-gs~Dg~--V~iwdl~~ 92 (945)
..+.+.+|+|||+.|+.+...++ .|++||+.++.. ..+....+.....+|+|||+.|+. .+.+|. |++|++.+
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 45678899999999998754443 588888876532 222222333457899999998875 455664 77788877
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEECC-C--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC-C-
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD-E--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI-G- 167 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D-g--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D-g- 167 (945)
++. ..+..+.......+|+|||+.|+..+.. + .|+++|+.+++... +..........+|+|+|++|+..+.+ +
T Consensus 296 g~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 296 KAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred CCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence 764 3445455566788999999998877653 3 47777887776433 32222334567899999988776553 3
Q ss_pred -cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEeecCCCCCCeEEE
Q 002266 168 -TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSLRGDHVQPICFL 243 (945)
Q Consensus 168 -~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~~~~h~~~I~~l 243 (945)
.|.++|+.++... .+... .......|+|+|+.|+..+.++ .+++++.. +.....+.. +.+.+...
T Consensus 374 ~~I~~~dl~~g~~~-~lt~~--------~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~-~~g~~~~p 442 (448)
T PRK04792 374 FNIARQDLETGAMQ-VLTST--------RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPA-GQGEVKSP 442 (448)
T ss_pred eEEEEEECCCCCeE-EccCC--------CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC-CCCCcCCC
Confidence 4566777776542 22111 0112357999999988766543 47788874 555555554 45667788
Q ss_pred EEcC
Q 002266 244 SWSP 247 (945)
Q Consensus 244 ~fSp 247 (945)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 8887
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=2e-08 Score=111.80 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=156.7
Q ss_pred ECCCCCEEEEEEc---------CCCeEEEEcCCCCccccccccc------cccceEEEEEecCCCEEEEEE-c-CCcEEE
Q 002266 25 WDQQAHHLVTASS---------SETTISIHDPLLPSNLPKILRH------HRDGVTALALSPNSTCLASGS-I-DHSVKL 87 (945)
Q Consensus 25 fspdg~~L~t~g~---------~dg~V~IWd~~~~~~~~~~l~~------h~~~V~~la~spdg~~Lasgs-~-Dg~V~i 87 (945)
+||||+.|+++.. .+..|.+||..+......+-.+ .......++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999999987 7889999999887533222211 012334788999999999876 3 689999
Q ss_pred EEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CeEE-EE---EecCCCCEE-EEEEcc-CCCEE
Q 002266 88 YKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID-GSIA-RV---LKGHKGPVT-GLAFDP-NSEYL 160 (945)
Q Consensus 88 wdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~-~~---l~~h~~~V~-~lafsp-dg~~L 160 (945)
+|+.+++.+..+.- .....-...+.+.. ++ -+.||......+.+ ++.. .. +.....++. .-.|.+ +|.++
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~-~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDTF-FM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCcc-EE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 99999998887764 22222222222222 21 12344433333222 2211 11 111001100 013455 88888
Q ss_pred EEEeCCCcEEEEEccCCe-----eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC----------CCeEEEEECCC
Q 002266 161 ASIDSIGTVIYWELQSGR-----ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL----------KNDVVMYDRDT 225 (945)
Q Consensus 161 as~s~Dg~I~iwDl~t~~-----~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~----------dg~I~vwD~~t 225 (945)
+++.. |.|.+.|+.... ....+..........+..+.-++++|+|+.+++... .+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 999999965432 222221111111223444555999999999888431 25799999999
Q ss_pred CcEEEeecCCCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEECCCCeeeeec
Q 002266 226 AEKLFSLRGDHVQPICFLSWSPNGK-YMATSS-LDRQILIWDVGKKLDIDRQ 275 (945)
Q Consensus 226 ~~~~~~~~~~h~~~I~~l~fSpdg~-~Lasgs-~Dg~I~IWD~~~~~~i~~~ 275 (945)
++.+..+.. ...+..++++|||+ +|++.. .++.|.|+|..+++.+...
T Consensus 289 ~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988874 35889999999999 777665 5788999999999988876
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=3e-09 Score=110.32 Aligned_cols=263 Identities=12% Similarity=0.127 Sum_probs=180.3
Q ss_pred CCeEEEEcCCCCcccc--ccccccccceEEEEEec---CCC-EEEEEEcCCcEEEEEcCCCeeeeecccCCC------CE
Q 002266 39 ETTISIHDPLLPSNLP--KILRHHRDGVTALALSP---NST-CLASGSIDHSVKLYKFPGGEFQTNITRFTL------PI 106 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~--~~l~~h~~~V~~la~sp---dg~-~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~------~V 106 (945)
.|.+.+|++......+ .........+..+.|.. +|. .|+-+-..|.|.+|..........+.+... ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678888876554322 12223345677788875 555 455566789999998765444333333211 24
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEcCCCeEE--EEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCC-eeeee
Q 002266 107 RVLAFNKSGSMLAAAGDDEGIKLINTIDGSIA--RVLKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSG-RELHN 182 (945)
Q Consensus 107 ~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~--~~l~~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~-~~i~~ 182 (945)
.++.|++.+..++++-.+|.+.+.+....... +.++.|...++-..|+. +.+.+++|+.||.+..||++.. +.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 57889999999999999999997776655443 47889999999999986 4568999999999999999943 22222
Q ss_pred ecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCC-CcEEEeecCCCCCCeEEEEEcCC--CCEEEEEECC
Q 002266 183 LKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDT-AEKLFSLRGDHVQPICFLSWSPN--GKYMATSSLD 258 (945)
Q Consensus 183 ~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t-~~~~~~~~~~h~~~I~~l~fSpd--g~~Lasgs~D 258 (945)
- ...|...|.++.-+| .+.+|++|+.|-.|++||.++ +++++.-. ..+.|..+.++|. +++|+++-..
T Consensus 205 n------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 205 N------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred c------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhc
Confidence 1 124567788888777 789999999999999999995 45555433 4589999999993 4556666555
Q ss_pred CeEEEEECCCCeee-----ee-ccCCCCeeEEEEecCCCEEEEEE-cCCeEE-EEecCCC
Q 002266 259 RQILIWDVGKKLDI-----DR-QKFDDRICCMAWKPIGNALAVID-VMGKYG-VWESVVP 310 (945)
Q Consensus 259 g~I~IWD~~~~~~i-----~~-~~~~~~V~~la~spdg~~Las~s-~DG~I~-iWd~~~~ 310 (945)
| .+|-+...+..- .. ..|.+-...-.|......||+|+ .|..++ +|-..++
T Consensus 277 G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 277 G-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred C-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 5 777777554322 11 33555566777755555788865 566644 7865543
No 256
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=99.18 E-value=2.6e-11 Score=80.18 Aligned_cols=27 Identities=56% Similarity=1.023 Sum_probs=26.4
Q ss_pred CceEEEEEEcCCEEEEEeCCCeEEEee
Q 002266 525 GEEVKAVALGTAWVAAVTSLNFLRIFT 551 (945)
Q Consensus 525 gE~i~~va~g~~~vav~Ts~~~lRifs 551 (945)
||+|+|||+|++||||+||++||||||
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEecC
Confidence 799999999999999999999999997
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=2.6e-09 Score=112.85 Aligned_cols=243 Identities=15% Similarity=0.239 Sum_probs=176.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC-CccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcC--
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLL-PSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP-- 91 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~-~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~-- 91 (945)
||.+.|++...-|...-+++.+ .|.+++||--.. +..-+.+......+++++.+.++...|++|-..|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s-~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVS-EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred CchhhhhhheeccCCCCeEEcc-ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 6668899988888888899886 999999996433 323333444456789999999999999999999999988764
Q ss_pred --CCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 002266 92 --GGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTV 169 (945)
Q Consensus 92 --~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I 169 (945)
.....+....|...+..+.|+....++++.+.|..+.---.+.+..+..+.- ....+++.+.-. +...|...|.|
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqv 177 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQI 177 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccce
Confidence 3445566778899999999999999999999998776555554443322110 011111222211 45556666666
Q ss_pred EEEEccCC--eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC
Q 002266 170 IYWELQSG--RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP 247 (945)
Q Consensus 170 ~iwDl~t~--~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp 247 (945)
.+-.+... ..+..+. .+...+.+++|.|....|.+|..|..+.+||+...+-+......|...|..++..+
T Consensus 178 t~lr~~~~~~~~i~~~~-------~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFN-------GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred EEEEEeecCCceEEEEc-------CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 66554332 2333332 56678999999999999999999999999999866644333334888999998888
Q ss_pred CCCEEEEEECCCeEEEEECCC
Q 002266 248 NGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 248 dg~~Lasgs~Dg~I~IWD~~~ 268 (945)
--+.+.+++.||.|.+|+++-
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 888999999999999999754
No 258
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=2.5e-08 Score=124.82 Aligned_cols=286 Identities=17% Similarity=0.251 Sum_probs=193.3
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEE----cCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcC-
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIH----DPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP- 91 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IW----d~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~- 91 (945)
.+.|.++.|-++...|+++. .+|.|.+. +... ........-..+|.+++||||+..|+..+.+++|.+.+-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~-~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIAL-ASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEE-CCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 36799999999999888876 88999988 4433 2344444557799999999999999999988888776421
Q ss_pred --------------C--------Ceeeeeccc------------------------CCCCEEEEEEecCCCEEEEEEC--
Q 002266 92 --------------G--------GEFQTNITR------------------------FTLPIRVLAFNKSGSMLAAAGD-- 123 (945)
Q Consensus 92 --------------~--------g~~~~~l~~------------------------~~~~V~~l~fspdg~~Lasgs~-- 123 (945)
. |+....+.+ ....-..|+|-.||.++|+.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 000001100 1223457889999999999875
Q ss_pred -C---CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCeeeeeecccCCCCCCCCCC
Q 002266 124 -D---EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS---IGTVIYWELQSGRELHNLKRVAPDIGSDPSS 196 (945)
Q Consensus 124 -D---g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~---Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~ 196 (945)
. ..++||+-+ |....+...-.+--.+++|-|.|+++|+... ...|.+|. ++|..-..+.... ......
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~---~~~~~~ 306 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF---DPEEEK 306 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC---CCCCce
Confidence 2 468999864 6655555444444567999999999998765 23566665 4444333343221 123456
Q ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC----CCC
Q 002266 197 MNVLSWSPDGETLAVPGLKNDVVMYDRDTAE--KLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDV----GKK 269 (945)
Q Consensus 197 i~~l~~spdg~~La~gs~dg~I~vwD~~t~~--~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~----~~~ 269 (945)
+..+.|++++..||+...+ .|.+|-+.+.. ..+.+.-.....+..+.|+|. ...|...+.+|.+.++++ ..+
T Consensus 307 v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred eeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 7899999999999997754 49999988754 333333223345556999994 445666666566655432 111
Q ss_pred ---------ee-------e----------------eeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 270 ---------LD-------I----------------DRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 270 ---------~~-------i----------------~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
.. + .......+|.+++|++++..+++...||.|.+|......
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 00 0 113346789999999999889999999999999865543
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=6.6e-09 Score=114.86 Aligned_cols=274 Identities=14% Similarity=0.173 Sum_probs=191.3
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCC--------------
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDH-------------- 83 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg-------------- 83 (945)
-++..++|||.|.+|++.. -..|.+|.......+. ......|..+.|+|.+.+|.+-+..+
T Consensus 33 ~p~~~~~~SP~G~~l~~~~--~~~V~~~~g~~~~~l~---~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH--AAGVECWGGPSKAKLV---RFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cchhheeecCcchheehhh--ccceEEccccchhhee---eeecCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4678899999999999874 4569999876654222 22235799999999999999876543
Q ss_pred -cEEEEEcCCCeeeeecccCCCC--EE-EEEEecCCCEEEEEECCCcEEEEEcCCCeEE-EEEecC-CCCEEEEEEccCC
Q 002266 84 -SVKLYKFPGGEFQTNITRFTLP--IR-VLAFNKSGSMLAAAGDDEGIKLINTIDGSIA-RVLKGH-KGPVTGLAFDPNS 157 (945)
Q Consensus 84 -~V~iwdl~~g~~~~~l~~~~~~--V~-~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~-~~l~~h-~~~V~~lafspdg 157 (945)
.+.+||+.+|..+..+.....+ .+ -+.|+-+.+++|-. ....++|+++ ++... ..+... ...|....|+|.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 4899999999988887766555 44 67888888877665 3456899997 33211 111111 3568889999964
Q ss_pred C--EEEE-----EeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-----------CCeEE
Q 002266 158 E--YLAS-----IDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-----------KNDVV 219 (945)
Q Consensus 158 ~--~Las-----~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-----------dg~I~ 219 (945)
+ .|+. ....+.+++|.+..+..+.+..... ..-..+.|++.|++|++-.. ...++
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 3 3443 3567889999998766554433211 11245899999998876321 34688
Q ss_pred EEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEE
Q 002266 220 MYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSS--LDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVID 297 (945)
Q Consensus 220 vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs--~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s 297 (945)
++++......... . ..++|..++|.|.++.+++.+ .+-.+.++|++.. +........=..+.|+|.++++++++
T Consensus 259 l~~~~e~~i~V~~-~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 259 LLRITERSIPVEK-D-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred EEeecccccceec-c-ccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEec
Confidence 8888744433332 2 568999999999888776654 6788999999887 33333344556788999999988866
Q ss_pred cC---CeEEEEecCC
Q 002266 298 VM---GKYGVWESVV 309 (945)
Q Consensus 298 ~D---G~I~iWd~~~ 309 (945)
-| |.|-+|+...
T Consensus 335 F~nl~gni~i~~~~~ 349 (561)
T COG5354 335 FDNLQGNIEIFDPAG 349 (561)
T ss_pred CCccccceEEeccCC
Confidence 54 7788998653
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.14 E-value=4.8e-09 Score=118.25 Aligned_cols=188 Identities=22% Similarity=0.316 Sum_probs=153.1
Q ss_pred cCCCEEEEEEcCCcEEEEEcCCCeeeeeccc---CCCCEEEEEEe--------------------cCCCEEEEEECCCcE
Q 002266 71 PNSTCLASGSIDHSVKLYKFPGGEFQTNITR---FTLPIRVLAFN--------------------KSGSMLAAAGDDEGI 127 (945)
Q Consensus 71 pdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~---~~~~V~~l~fs--------------------pdg~~Lasgs~Dg~I 127 (945)
|-..++|....||.+++|+...++....+.. ..+...+..|. .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457899999999999999998876655542 34455555552 133467888889999
Q ss_pred EEEEcCCCeEEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC
Q 002266 128 KLINTIDGSIARVLK--GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD 205 (945)
Q Consensus 128 ~iwd~~~~~~~~~l~--~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd 205 (945)
.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+......++.+... ...+.+++.+||
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-------~~~~~sl~is~D 155 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-------KPLVSSLCISPD 155 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-------CCccceEEEcCC
Confidence 999999999888776 68999999999999999999999999999999998888877643 345678999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC-----CCEEEEE-ECCCeEEEEECCC
Q 002266 206 GETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN-----GKYMATS-SLDRQILIWDVGK 268 (945)
Q Consensus 206 g~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd-----g~~Lasg-s~Dg~I~IWD~~~ 268 (945)
|..+++++ +.|.+||+.+.+.+..|.+ |.++|.+++|--+ |.|+.++ ..+..+.+|-+..
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999975 6899999999999999998 9999999999876 6776654 4456688886654
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-09 Score=114.90 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=173.0
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe-----eeeecccCC------------CCEEEEEEecCC--CEEEEE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE-----FQTNITRFT------------LPIRVLAFNKSG--SMLAAA 121 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~-----~~~~l~~~~------------~~V~~l~fspdg--~~Lasg 121 (945)
.+-|.++.|...|.+|++|..+|.|.+|.-.... ....++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999743221 222232232 357789998865 467788
Q ss_pred ECCCcEEEEEcCCCeEE-----------------------------------EEE-ecCCCCEEEEEEccCCCEEEEEeC
Q 002266 122 GDDEGIKLINTIDGSIA-----------------------------------RVL-KGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 122 s~Dg~I~iwd~~~~~~~-----------------------------------~~l-~~h~~~V~~lafspdg~~Las~s~ 165 (945)
+.|.+|++|-+...... +.+ .+|...|.+|+++.|++.++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 89999999987532100 000 24788899999999999988865
Q ss_pred CCcEEEEEccCCeeeeeecccCCCC-CCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCc------EEEeecC---
Q 002266 166 IGTVIYWELQSGRELHNLKRVAPDI-GSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAE------KLFSLRG--- 234 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~~~~~~~~~-~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~------~~~~~~~--- 234 (945)
|=.|-+|++.-......+....+.. ..-...|++..||| ..+.++..+..|.|++.|++... .++..+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999987554333333222211 11124577889999 57788889999999999998432 1111111
Q ss_pred ------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeeeeec-cC------------CCCe---eEEEEecCCC
Q 002266 235 ------DHVQPICFLSWSPNGKYMATSSLDRQILIWDVG-KKLDIDRQ-KF------------DDRI---CCMAWKPIGN 291 (945)
Q Consensus 235 ------~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~-~~~~i~~~-~~------------~~~V---~~la~spdg~ 291 (945)
.-...|..+.|+++|+|+++-+. -+|+|||+. ..+++... -| ...| ..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 12246889999999999998753 679999993 33333331 11 1233 4688999999
Q ss_pred EEEEEEcCCeEEEEecCCCC
Q 002266 292 ALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 292 ~Las~s~DG~I~iWd~~~~~ 311 (945)
++++|+....+++++...++
T Consensus 343 ~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eEecccccceEEEecCCCCc
Confidence 99999999999999966554
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.5e-08 Score=112.77 Aligned_cols=275 Identities=16% Similarity=0.242 Sum_probs=184.6
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc-----------CCcEEEEE
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI-----------DHSVKLYK 89 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~-----------Dg~V~iwd 89 (945)
+-+.|||-|.||++-- -.-|.+|-..+-..+.+. .| -.|.-+.|||..+||+|-+. ...+.|||
T Consensus 214 tyv~wSP~GTYL~t~H--k~GI~lWGG~~f~r~~RF--~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFH--KQGIALWGGESFDRIQRF--YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEe--ccceeeecCccHHHHHhc--cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 4567999999999985 456899975443222222 23 46899999999999998753 25799999
Q ss_pred cCCCeeeeecccC--CCCE-EEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-
Q 002266 90 FPGGEFQTNITRF--TLPI-RVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS- 165 (945)
Q Consensus 90 l~~g~~~~~l~~~--~~~V-~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~- 165 (945)
+.+|.....+... ...+ .-..||.|++++|.-..+ .|.||+...-.++-.-.-.-..|....|+|.++.||.-..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9999887776653 2222 346899999999987764 6899987664433222223467899999999988875432
Q ss_pred ----CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEe
Q 002266 166 ----IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL----------KNDVVMYDRDTAEKLFS 231 (945)
Q Consensus 166 ----Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~----------dg~I~vwD~~t~~~~~~ 231 (945)
-..+.+..+.+++.+++..... ..-..+-|..+|.+|++-.. -..+.|+.++.......
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred ccCCcceEEEEecCccceeeecccee-------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 1356777777776665543211 11234788889999987421 12355666654443222
Q ss_pred ecCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC-Ceeeee-ccC-CCCeeEEEEecCCCEEEEE---EcCCeE
Q 002266 232 LRGDHVQPICFLSWSPNGKYMATSSL---DRQILIWDVGK-KLDIDR-QKF-DDRICCMAWKPIGNALAVI---DVMGKY 302 (945)
Q Consensus 232 ~~~~h~~~I~~l~fSpdg~~Lasgs~---Dg~I~IWD~~~-~~~i~~-~~~-~~~V~~la~spdg~~Las~---s~DG~I 302 (945)
... ....|...+|-|.|..+++-+. ..++.+|.+.+ ...... ... ....+.+.|+|.|++++++ +..|.+
T Consensus 441 ~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 441 VVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred eee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccce
Confidence 211 4568899999999988776653 35788998874 211111 111 2457889999999987765 567899
Q ss_pred EEEecCC
Q 002266 303 GVWESVV 309 (945)
Q Consensus 303 ~iWd~~~ 309 (945)
.++|...
T Consensus 520 ~F~D~~~ 526 (698)
T KOG2314|consen 520 EFYDTDY 526 (698)
T ss_pred EEEecch
Confidence 9999874
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.12 E-value=2.2e-08 Score=110.84 Aligned_cols=278 Identities=14% Similarity=0.163 Sum_probs=186.3
Q ss_pred CCEEEEEECCCCCEEEEEEc--------------CCCeEEEEcCCCCccccccccccccc--eE-EEEEecCCCEEEEEE
Q 002266 18 ASFCSILWDQQAHHLVTASS--------------SETTISIHDPLLPSNLPKILRHHRDG--VT-ALALSPNSTCLASGS 80 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~--------------~dg~V~IWd~~~~~~~~~~l~~h~~~--V~-~la~spdg~~Lasgs 80 (945)
..|.-+.|||.+++|.+=.. .+..+.|||+.++ .+...+..-..+ .+ -+.|+-+..++|-.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 56888999999999998641 1235899999877 444444443333 44 67888888777654
Q ss_pred cCCcEEEEEcCCCeee-eecccC-CCCEEEEEEecCC--CEEEE-----EECCCcEEEEEcCCCeEEEEEecCCCCEEEE
Q 002266 81 IDHSVKLYKFPGGEFQ-TNITRF-TLPIRVLAFNKSG--SMLAA-----AGDDEGIKLINTIDGSIARVLKGHKGPVTGL 151 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~~~-~~l~~~-~~~V~~l~fspdg--~~Las-----gs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~l 151 (945)
....++|+++ ++... ..+... ...|....|+|.+ ..||. .+..+.+++|.+..+..+.+-.-....=..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3356999997 33221 112111 3568888999853 34444 3567789999998776665544333444678
Q ss_pred EEccCCCEEEEEeC-----------CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe--CCCeE
Q 002266 152 AFDPNSEYLASIDS-----------IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG--LKNDV 218 (945)
Q Consensus 152 afspdg~~Las~s~-----------Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs--~dg~I 218 (945)
.|++.|++|++-.. ...++++++......... ...++|...+|.|.++.+++.+ ..-.+
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~ 300 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASV 300 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--------cccccceeeeecccCCceeEEecccccce
Confidence 99999997764321 235677776532211111 2247889999999887776654 67789
Q ss_pred EEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEE
Q 002266 219 VMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLD---RQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAV 295 (945)
Q Consensus 219 ~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D---g~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las 295 (945)
.++|++.. ..+.++. ..=..+.|||.+++++.++-| |.|-|||......+...-......-+.|+|+++++.+
T Consensus 301 s~~~lr~N-l~~~~Pe---~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~ 376 (561)
T COG5354 301 SVFDLRGN-LRFYFPE---QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDT 376 (561)
T ss_pred eecccccc-eEEecCC---cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEe
Confidence 99999855 5555443 455667899999999998765 7899999987766553222334556679999998777
Q ss_pred EE------cCCeEEEEecCCC
Q 002266 296 ID------VMGKYGVWESVVP 310 (945)
Q Consensus 296 ~s------~DG~I~iWd~~~~ 310 (945)
.. .|..|.||++.-.
T Consensus 377 ~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 377 DTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cCCCcccccCcceEEEEecCc
Confidence 53 4778999997643
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=3.6e-09 Score=125.67 Aligned_cols=275 Identities=14% Similarity=0.086 Sum_probs=188.2
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEE--EecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALA--LSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la--~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
-+.+++..+-. ++|+++. .-.|.+||...+..+......+.-.+.... ..-.+.+++++..-+.+..=...
T Consensus 7 ~~~l~~~~~~~--~~llag~--gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~--- 79 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS--GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEAS--- 79 (967)
T ss_pred cccccchhhcc--ceeeecC--CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchh---
Confidence 34555555543 6777664 557999998776433322222222222000 00123355555544434332221
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCC----CEEEEEEccCCCEEEEEeCCCcEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKG----PVTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~----~V~~lafspdg~~Las~s~Dg~I~ 170 (945)
...+......+....+..+...++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.
T Consensus 80 -~~~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ii 158 (967)
T KOG0974|consen 80 -NQIIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEII 158 (967)
T ss_pred -hhhhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEE
Confidence 112233344555556666778899999999999999987766555442221 122233456666899999999999
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-eecCCCCCCeEEEEEcCCC
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLF-SLRGDHVQPICFLSWSPNG 249 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~-~~~~~h~~~I~~l~fSpdg 249 (945)
+|+....+.-. ...+|.+.+..+.|+-+|.++++.+.|..+++|++.+.+... ...+ |...|..++|.|+
T Consensus 159 vW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-HsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 159 VWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSARVWACCFLPN- 229 (967)
T ss_pred EEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccceeEEEEeccc-
Confidence 99986222111 244778899999999999999999999999999999988765 3344 9999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeeccC-CCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 250 KYMATSSLDRQILIWDVGKKLDIDRQKF-DDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 250 ~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
++++++.|-+.++|+......-....| ...|..++..+....+++++.||.+++|+..-
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999999997766554433344 46799999999999999999999999999753
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.3e-09 Score=115.04 Aligned_cols=250 Identities=20% Similarity=0.382 Sum_probs=171.9
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCC--CEEEE-----EEcCCcEEEEEcCCC
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS--TCLAS-----GSIDHSVKLYKFPGG 93 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg--~~Las-----gs~Dg~V~iwdl~~g 93 (945)
++..|++|..+.+-- ..+.|.+|+....... .-.-|...|+.+.++|.+ ..+|+ .+.-..|+||.+...
T Consensus 129 W~~qfs~dEsl~arl--v~nev~f~~~~~f~~~--~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL--VSNEVQFYDLGSFKTI--QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhh--hcceEEEEecCCccce--eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 467788888765543 3568999997663222 233467889999999964 34443 244578999998633
Q ss_pred eeeee---cccCCCCEEEEEEecCCCEEEE-EEC-----------CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC
Q 002266 94 EFQTN---ITRFTLPIRVLAFNKSGSMLAA-AGD-----------DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE 158 (945)
Q Consensus 94 ~~~~~---l~~~~~~V~~l~fspdg~~Las-gs~-----------Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~ 158 (945)
..... -.-+...-..+.|++-|.-|++ ++. ..+++++++........+. ..++|.++.|+|+++
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGR 283 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCC
Confidence 22111 1123444456788887764332 222 2358888887444443343 579999999999998
Q ss_pred EEEEE--eCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEeec
Q 002266 159 YLASI--DSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL---KNDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 159 ~Las~--s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~---dg~I~vwD~~t~~~~~~~~ 233 (945)
-++++ -.-..+.|||++ +..+..+. .++-+++-|+|.|++|+.++. .|.|.|||+.+.+.+..+.
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df~---------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP---------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeCC---------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 66654 456689999985 44555443 245578999999999998876 4789999999988887776
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeeeeeccCCCCeeEEEEecC
Q 002266 234 GDHVQPICFLSWSPNGKYMATSSL------DRQILIWDVGKKLDIDRQKFDDRICCMAWKPI 289 (945)
Q Consensus 234 ~~h~~~I~~l~fSpdg~~Lasgs~------Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spd 289 (945)
. ..-+-+.|+|||.+++|++. |+.++||++... .+....+......+.|-|-
T Consensus 354 a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~-~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 354 A---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS-LLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred c---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc-eeehhhhhHhHhheeeeec
Confidence 4 34566899999999999874 678999997654 4444444447889999874
No 266
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.5e-10 Score=133.56 Aligned_cols=220 Identities=15% Similarity=0.229 Sum_probs=156.2
Q ss_pred ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCC--cEEEE
Q 002266 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDE--GIKLI 130 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg--~I~iw 130 (945)
....+..|....+|++|+.+.++|+.|+..|.|++|++.+|........|..+|+.+.-+.+|..+++.+.-. -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 3566778899999999999999999999999999999999999999999999999999999999887766544 36789
Q ss_pred EcCC-CeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEE
Q 002266 131 NTID-GSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209 (945)
Q Consensus 131 d~~~-~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~L 209 (945)
++.. +...+++. .-.++.|+.....-+.|+......+||+.++..+.++-.. .. .....-++..|+|+..++
T Consensus 1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~--~~-~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD--TV-TSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred ccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc--ch-hhhhhccccccCCCcceE
Confidence 8754 33444443 3457788876555555666667899999998776653221 11 111223678999998887
Q ss_pred EEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecC
Q 002266 210 AVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPI 289 (945)
Q Consensus 210 a~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spd 289 (945)
+- || .+||++..+.++.|.. .. .-..=.|+|+|.-++.-+. |||+++.+.++.... -.-+.+.|+..
T Consensus 1246 ln---dG--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~-Ldqc~VtFNst 1312 (1516)
T KOG1832|consen 1246 LN---DG--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS-LDQCAVTFNST 1312 (1516)
T ss_pred ee---Cc--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc-ccceEEEeccC
Confidence 75 44 6899998887777754 22 1122359999988887653 899988766554221 11234445555
Q ss_pred CCE
Q 002266 290 GNA 292 (945)
Q Consensus 290 g~~ 292 (945)
|..
T Consensus 1313 G~V 1315 (1516)
T KOG1832|consen 1313 GDV 1315 (1516)
T ss_pred ccc
Confidence 443
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=7.4e-08 Score=105.43 Aligned_cols=172 Identities=19% Similarity=0.249 Sum_probs=134.6
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCC-cEEEEEcCCCeeeeecccCCCCE
Q 002266 28 QAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDH-SVKLYKFPGGEFQTNITRFTLPI 106 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg-~V~iwdl~~g~~~~~l~~~~~~V 106 (945)
+|.++++.+ .|...|.+.-.+ ..+--+|.+.|.-..+..++.-++.|..|| .+-||+..+++. ..+...-+.|
T Consensus 331 ~Gd~ia~VS--RGkaFi~~~~~~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I 404 (668)
T COG4946 331 NGDYIALVS--RGKAFIMRPWDG---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNI 404 (668)
T ss_pred CCcEEEEEe--cCcEEEECCCCC---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccce
Confidence 678888875 677777765433 223346677899888888888999999998 899999988774 4455566789
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEccCCeeeee
Q 002266 107 RVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIG----TVIYWELQSGRELHN 182 (945)
Q Consensus 107 ~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg----~I~iwDl~t~~~i~~ 182 (945)
.++..+++|++++++.+...|.++|+.++.....-+...+-|+.+.|+|+++++|-+--+| .|++||+..++....
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 9999999999999999999999999999987665566678899999999999999887666 699999988876544
Q ss_pred ecccCCCCCCCCCCceEEEEcCCCCEEEEEe
Q 002266 183 LKRVAPDIGSDPSSMNVLSWSPDGETLAVPG 213 (945)
Q Consensus 183 ~~~~~~~~~~~~~~i~~l~~spdg~~La~gs 213 (945)
.... ..-.+.+|.|+|++|..-+
T Consensus 485 TT~t--------a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 485 TTPT--------AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCc--------ccccCcccCCCCcEEEEEe
Confidence 3221 1123468899999887644
No 268
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=4.6e-09 Score=124.87 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=156.5
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCC----CEEEEEEecCCCEEEEEECCCcEEEEEcCCCeE
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTL----PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI 137 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~----~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~ 137 (945)
+.|....+.-+...++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+--+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3444455555677888888899999999887766555443221 122344566777899999999999999874444
Q ss_pred EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe
Q 002266 138 ARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND 217 (945)
Q Consensus 138 ~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~ 217 (945)
...+.+|.+.|.++.|+-+|.++++.+.|.++++|++.+.+... ....+|...+..++|+|+ .+++++.|.+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc--eeEEeccceE
Confidence 44688999999999999999999999999999999999887654 223367888999999998 8999999999
Q ss_pred EEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002266 218 VVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK 268 (945)
Q Consensus 218 I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~ 268 (945)
.++|+.. +..+..+.......|..++..++...++|++.||.+++|++..
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999665 4445566664456899999999999999999999999999854
No 269
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=5.5e-08 Score=112.39 Aligned_cols=217 Identities=13% Similarity=0.073 Sum_probs=139.2
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCE-EEEEEc---CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCC
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTC-LASGSI---DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG 115 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~-Lasgs~---Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg 115 (945)
..|.+-|.... . .+.+... +.+....|+|||+. ++..+. ...|+++|+.+++.... ....+......|+|||
T Consensus 169 ~~l~~~d~dg~-~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLT-Y-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCC-c-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCC
Confidence 35555554322 2 3333333 37789999999984 554443 35699999988875443 3456667778899999
Q ss_pred CEEEEEEC---CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeeeeeecccCCC
Q 002266 116 SMLAAAGD---DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS-IG--TVIYWELQSGRELHNLKRVAPD 189 (945)
Q Consensus 116 ~~Lasgs~---Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~-Dg--~I~iwDl~t~~~i~~~~~~~~~ 189 (945)
+.|+.... +..|+++|+.++.. ..+..+........|+|||+.|+..+. .| .|.++|+.++........
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---- 319 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---- 319 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----
Confidence 88776543 34688889877764 344444444456789999997776653 33 588888877655332210
Q ss_pred CCCCCCCceEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECC--
Q 002266 190 IGSDPSSMNVLSWSPDGETLAVPGLK---------NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLD-- 258 (945)
Q Consensus 190 ~~~~~~~i~~l~~spdg~~La~gs~d---------g~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D-- 258 (945)
. . ....|+|+|++|+..+.. ..|.++|+.++... .+.. . .......|+|||+.|+..+.+
T Consensus 320 --g--~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~-~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 320 --G--K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA-N-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred --C--C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC-C-CCcCCeEECCCCCEEEEEEccCC
Confidence 1 1 124899999999887653 36889999887643 3332 1 223358899999988776643
Q ss_pred -CeEEEEECCCCeeeee
Q 002266 259 -RQILIWDVGKKLDIDR 274 (945)
Q Consensus 259 -g~I~IWD~~~~~~i~~ 274 (945)
..|.+.++........
T Consensus 391 ~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 391 QSALGIIRLNYNKSFLF 407 (419)
T ss_pred cEEEEEEecCCCeeEEe
Confidence 2466777766544433
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=2.1e-07 Score=116.62 Aligned_cols=282 Identities=17% Similarity=0.219 Sum_probs=176.2
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCC-------------CCc---------ccccc------------------
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPL-------------LPS---------NLPKI------------------ 56 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~-------------~~~---------~~~~~------------------ 56 (945)
...|.|++||||+..|+.+. .+++|.+-... .+. .....
T Consensus 120 d~GI~a~~WSPD~Ella~vT-~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVT-GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEe-CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 35799999999999999887 56677664310 000 00000
Q ss_pred -------ccccccceEEEEEecCCCEEEEEEc---C---CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEEC
Q 002266 57 -------LRHHRDGVTALALSPNSTCLASGSI---D---HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD 123 (945)
Q Consensus 57 -------l~~h~~~V~~la~spdg~~Lasgs~---D---g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~ 123 (945)
+. +.+.-..|+|-.||.++|+.+- . ..++||+- .|.+...-....+--.+++|.|.|++||+...
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 11 2334567999999999998764 2 47899985 47766555544445567899999999999864
Q ss_pred ---CCcEEEEEcCCCeEEEEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCC
Q 002266 124 ---DEGIKLINTIDGSIARVL----KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSS 196 (945)
Q Consensus 124 ---Dg~I~iwd~~~~~~~~~l----~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~ 196 (945)
...|.+|.- +|-....+ ......|..+.|++++..||....|. |.+|-..+-.--....... .....
T Consensus 277 ~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~----~~~~~ 350 (928)
T PF04762_consen 277 LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF----SSSES 350 (928)
T ss_pred cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc----cCCCC
Confidence 334666653 33222222 23457899999999999999987655 9999887754222111111 11122
Q ss_pred ceEEEEcC-CCCEEEEEeCCCeEEEEECC----CC--------cEEEeecC----------------------CCCCCeE
Q 002266 197 MNVLSWSP-DGETLAVPGLKNDVVMYDRD----TA--------EKLFSLRG----------------------DHVQPIC 241 (945)
Q Consensus 197 i~~l~~sp-dg~~La~gs~dg~I~vwD~~----t~--------~~~~~~~~----------------------~h~~~I~ 241 (945)
+..+.|+| +...|.+.+.+|.+..++.. .+ ..+..+.| ....+|.
T Consensus 351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~ 430 (928)
T PF04762_consen 351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN 430 (928)
T ss_pred CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE
Confidence 34489999 56667777766666554421 11 01111111 1356899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeee--------eec-----------cCCCCeeEEEEecCCCEEEEEEcC---
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDI--------DRQ-----------KFDDRICCMAWKPIGNALAVIDVM--- 299 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i--------~~~-----------~~~~~V~~la~spdg~~Las~s~D--- 299 (945)
+++|++++..+|+-..||.|.+|........ ... .....+..++|..+...++....+
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQ 510 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCccc
Confidence 9999999988999999999999985442211 011 113456788888777665555543
Q ss_pred CeEEEEec
Q 002266 300 GKYGVWES 307 (945)
Q Consensus 300 G~I~iWd~ 307 (945)
+.+.+++.
T Consensus 511 ~~i~~~~~ 518 (928)
T PF04762_consen 511 SKIVLVDI 518 (928)
T ss_pred ceEEEEEe
Confidence 34555544
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.03 E-value=7.3e-09 Score=109.50 Aligned_cols=246 Identities=17% Similarity=0.307 Sum_probs=185.3
Q ss_pred ccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEc-CCCeeeeecc-cCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 002266 53 LPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKF-PGGEFQTNIT-RFTLPIRVLAFNKSGSMLAAAGDDEGIKLI 130 (945)
Q Consensus 53 ~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl-~~g~~~~~l~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~iw 130 (945)
....+.+|.+.|++...-|...-+++.+.|.+++||-- +.++....+. .-+.+++++.+.++...|++|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 44567888899998888887788999999999999953 4455444433 346789999999999999999999999887
Q ss_pred EcC----CCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC
Q 002266 131 NTI----DGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG 206 (945)
Q Consensus 131 d~~----~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg 206 (945)
.+. .....+....|...|..+.|+-..+++++.+.|..+.---.+.+..+........ .+.+.+.-.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--------~t~~~~d~~- 166 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--------ASALQFDAL- 166 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--------CCCCceeeE-
Confidence 654 3455666778999999999999999999999998776555555543322211000 001111111
Q ss_pred CEEEEEeCCCeEEEEECC--CCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--CeeeeeccCCCCee
Q 002266 207 ETLAVPGLKNDVVMYDRD--TAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK--KLDIDRQKFDDRIC 282 (945)
Q Consensus 207 ~~La~gs~dg~I~vwD~~--t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~--~~~i~~~~~~~~V~ 282 (945)
+..+|...|.|.+..+. .-..+.++.+ |...+++++|.|..+.|.+|..|..+.+||+.. +.......|...|.
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 55566666666655443 4456677776 999999999999999999999999999999965 44455578888999
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 283 CMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 283 ~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
.+..-+.-+.|.+++.||.|.+|+...
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccc
Confidence 998888888999999999999999764
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=1.3e-07 Score=108.61 Aligned_cols=270 Identities=12% Similarity=0.086 Sum_probs=168.4
Q ss_pred CCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEE
Q 002266 29 AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRV 108 (945)
Q Consensus 29 g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~ 108 (945)
+..+++++ .++.|..+|..++.... ............. .++..+++++.+|.|..+|..+|+....... ...+.+
T Consensus 65 ~~~v~v~~-~~g~v~a~d~~tG~~~W-~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~ 139 (377)
T TIGR03300 65 GGKVYAAD-ADGTVVALDAETGKRLW-RVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSEVLS 139 (377)
T ss_pred CCEEEEEC-CCCeEEEEEccCCcEee-eecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cceeec
Confidence 55677665 78899999987774332 2222111111222 2466788888999999999999987655442 222222
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEE-----EEEEccCCCEEEEEeCCCcEEEEEccCCeeeeee
Q 002266 109 LAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT-----GLAFDPNSEYLASIDSIGTVIYWELQSGRELHNL 183 (945)
Q Consensus 109 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~-----~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~ 183 (945)
.... .+..+++++.++.|..||..+++.+..+......+. +.... +..++.+..+|.+..+|..+|+.+...
T Consensus 140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1111 345677788899999999999988776654322111 11121 346778888899999999999876554
Q ss_pred cccCCCCCCCCCCceEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 002266 184 KRVAPDIGSDPSSMNVLSWSP--DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQI 261 (945)
Q Consensus 184 ~~~~~~~~~~~~~i~~l~~sp--dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I 261 (945)
....+...........+.-+| .+..+++++.+|.++.||..+++.+..... . ...... ..+..++.++.+|.|
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~-~~~~p~--~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--S-SYQGPA--VDDNRLYVTDADGVV 291 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--C-CccCce--EeCCEEEEECCCCeE
Confidence 321110000000000011111 356788888899999999999988776642 1 111122 246678888889999
Q ss_pred EEEECCCCeeeeec-cCCCC-eeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 262 LIWDVGKKLDIDRQ-KFDDR-ICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 262 ~IWD~~~~~~i~~~-~~~~~-V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
..+|..+++.+... ..... ..+... .+..|++++.+|.|++|+...++.+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 99999999877554 22222 222222 3668999999999999998776653
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=134.92 Aligned_cols=201 Identities=17% Similarity=0.274 Sum_probs=162.4
Q ss_pred cccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeeccc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
.+..+-..|.++.-+|...+.+||+.||.|++|....++.+..+.. .+..|+.+.|+.+|+.+.++..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3455667889998899888999999999999999988877665542 34789999999999999999999999999986
Q ss_pred CeEEEEEecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE
Q 002266 135 GSIARVLKGHKGPVTGLAFDPNSEYLASID---SIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV 211 (945)
Q Consensus 135 ~~~~~~l~~h~~~V~~lafspdg~~Las~s---~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~ 211 (945)
.++....+.|.....++.|-. ..+++++ .++.+.+||.--......+. ..|.+.++++++.|..+.|++
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee------eecCCCceEEEEcCcceEEEe
Confidence 667777888999999999875 5677664 46789999964332211111 367788999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002266 212 PGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK 276 (945)
Q Consensus 212 gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~ 276 (945)
|+.+|.|++||++..+.++.+.. +. ...++++|+..|.|+||++.....+....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999999998777766653 44 56789999999999999998877666643
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.2e-07 Score=118.57 Aligned_cols=247 Identities=14% Similarity=0.107 Sum_probs=162.7
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccc--------------cccceEEEEEecCCCEEEEEE-cCCcE
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRH--------------HRDGVTALALSPNSTCLASGS-IDHSV 85 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~--------------h~~~V~~la~spdg~~Lasgs-~Dg~V 85 (945)
..+++++.+..|+++...++.|++||.... . ...+.. +-.....|++++++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-F-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-E-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 457888876666666668889999996532 1 111111 112357899999888766654 45789
Q ss_pred EEEEcCCCeeeeecccC-----------------CCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCeEEEEEecC---
Q 002266 86 KLYKFPGGEFQTNITRF-----------------TLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGSIARVLKGH--- 144 (945)
Q Consensus 86 ~iwdl~~g~~~~~l~~~-----------------~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h--- 144 (945)
+++|+.++... ++.+. -.....++|+| ++.++++.+.++.|++||..++... .+.+.
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 99998776532 22110 11246799999 5566666677889999999776542 22111
Q ss_pred ------------CCCEEEEEEccCCCEEE-EEeCCCcEEEEEccCCeeeeeeccc------CCCCCC--------CCCCc
Q 002266 145 ------------KGPVTGLAFDPNSEYLA-SIDSIGTVIYWELQSGRELHNLKRV------APDIGS--------DPSSM 197 (945)
Q Consensus 145 ------------~~~V~~lafspdg~~La-s~s~Dg~I~iwDl~t~~~i~~~~~~------~~~~~~--------~~~~i 197 (945)
-.....|+|+|++..|+ +-+.++.|++||+.++......... ....+. .....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12356799999998555 4456789999999876532111000 000000 01124
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002266 198 NVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD------------HVQPICFLSWSPNGKYMATSSLDRQILIWD 265 (945)
Q Consensus 198 ~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~------------h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD 265 (945)
..++++++|..+++-+.++.|++||..++......... .-.....++++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 57899999998888888999999999877654322110 112567899999999989888999999999
Q ss_pred CCCCee
Q 002266 266 VGKKLD 271 (945)
Q Consensus 266 ~~~~~~ 271 (945)
+.++..
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=8.5e-07 Score=95.45 Aligned_cols=271 Identities=14% Similarity=0.188 Sum_probs=176.3
Q ss_pred CCCCEEEEEECCCCCEEEEEEcC--CCeEEEEcCCCCccccccc---cccccceEEEEEecCCCEEEEEEc-CCcEEEEE
Q 002266 16 NAASFCSILWDQQAHHLVTASSS--ETTISIHDPLLPSNLPKIL---RHHRDGVTALALSPNSTCLASGSI-DHSVKLYK 89 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~--dg~V~IWd~~~~~~~~~~l---~~h~~~V~~la~spdg~~Lasgs~-Dg~V~iwd 89 (945)
+.+.++-|+|+|++++|.++... .|.|.-|.++........+ .....+.+.++++++|++|+++.. .|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 44667889999999999998644 6788777665431111111 112234488999999999999875 48899998
Q ss_pred cCC-Ceeeee--cccCCCC----------EEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeEEEEEe---cCCCCEEEEE
Q 002266 90 FPG-GEFQTN--ITRFTLP----------IRVLAFNKSGSMLAAAGD-DEGIKLINTIDGSIARVLK---GHKGPVTGLA 152 (945)
Q Consensus 90 l~~-g~~~~~--l~~~~~~----------V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~~l~---~h~~~V~~la 152 (945)
+.. |.+... ...|.+. +....+.|++++|++..- -..|.+|++..+.....-. .....-+.|.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence 854 432211 1223333 788999999999988753 3369999998776432211 2345568999
Q ss_pred EccCCCEEEEEe-CCCcEEEEEccCC----eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCC-
Q 002266 153 FDPNSEYLASID-SIGTVIYWELQSG----RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDT- 225 (945)
Q Consensus 153 fspdg~~Las~s-~Dg~I~iwDl~t~----~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t- 225 (945)
|+|++++..+.+ -+++|.+|..... +.++.+......+ ........+..++||++|.++.+ ...|.+|.+..
T Consensus 198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 999999876655 4889999998773 2333333332222 23455677999999999998754 23677777653
Q ss_pred -CcEE-EeecCCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECC--CCeeeeec--cCCCCeeEEEEe
Q 002266 226 -AEKL-FSLRGDHVQPICFLSWSPNGKYMATSSLD-RQILIWDVG--KKLDIDRQ--KFDDRICCMAWK 287 (945)
Q Consensus 226 -~~~~-~~~~~~h~~~I~~l~fSpdg~~Lasgs~D-g~I~IWD~~--~~~~i~~~--~~~~~V~~la~s 287 (945)
++.. ......+......+.|+|.|++|+++..+ ..|.||..+ ++++-... .......|+.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 3221 11122244457889999999999998875 468888764 45544332 223344555553
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=5.4e-08 Score=109.87 Aligned_cols=189 Identities=15% Similarity=0.222 Sum_probs=149.4
Q ss_pred CCCCCEEEEEEcCCCeEEEEcCCCCcccccccc---ccccceEEEEEe--------------------cCCCEEEEEEcC
Q 002266 26 DQQAHHLVTASSSETTISIHDPLLPSNLPKILR---HHRDGVTALALS--------------------PNSTCLASGSID 82 (945)
Q Consensus 26 spdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~---~h~~~V~~la~s--------------------pdg~~Lasgs~D 82 (945)
.|-+.++|... .||.++||+...+. ....+. .-.+..++..|. .+...++-|...
T Consensus 2 ~~~~~~~A~~~-~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALST-GDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecC-CCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34566777775 89999999987764 222222 223455566553 133467778888
Q ss_pred CcEEEEEcCCCeeeeecc--cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEE
Q 002266 83 HSVKLYKFPGGEFQTNIT--RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYL 160 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~--~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~L 160 (945)
|.|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+......++.+.+....+.+++++|||..|
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 999999999999887765 578899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-----CCEEEEEe-CCCeEEEEECCC
Q 002266 161 ASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD-----GETLAVPG-LKNDVVMYDRDT 225 (945)
Q Consensus 161 as~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd-----g~~La~gs-~dg~I~vwD~~t 225 (945)
++++ +.|++||+.+++.+..+. +|.+++++++|--+ |.+++++. .+..|.+|-+..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ft-------gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFT-------GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEec-------CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9987 589999999999998886 56788999998765 67766543 345567776543
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=4.3e-07 Score=116.01 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=162.3
Q ss_pred EEEEEecC-CCEEEEEEcCCcEEEEEcCCCeeeeeccc-C-------------CCCEEEEEEecCCCEEEEEEC-CCcEE
Q 002266 65 TALALSPN-STCLASGSIDHSVKLYKFPGGEFQTNITR-F-------------TLPIRVLAFNKSGSMLAAAGD-DEGIK 128 (945)
Q Consensus 65 ~~la~spd-g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~-~-------------~~~V~~l~fspdg~~Lasgs~-Dg~I~ 128 (945)
..++++++ +.++++-+.++.|++||.. +.....+.. . -.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5666666778899999975 443333322 0 113578999998887766654 56799
Q ss_pred EEEcCCCeEEEEEecC-----------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeeeeeecccC--C
Q 002266 129 LINTIDGSIARVLKGH-----------------KGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHNLKRVA--P 188 (945)
Q Consensus 129 iwd~~~~~~~~~l~~h-----------------~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~--~ 188 (945)
++|+.++. +.++.+. -....+++|+| ++.++++.+.++.|++||..++.... +.... .
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 99987765 3333210 11346899999 55566666778899999988765422 21100 0
Q ss_pred CC------CCCCCCceEEEEcCCCCEEEE-EeCCCeEEEEECCCCcEEEeecC------------CC--------CCCeE
Q 002266 189 DI------GSDPSSMNVLSWSPDGETLAV-PGLKNDVVMYDRDTAEKLFSLRG------------DH--------VQPIC 241 (945)
Q Consensus 189 ~~------~~~~~~i~~l~~spdg~~La~-gs~dg~I~vwD~~t~~~~~~~~~------------~h--------~~~I~ 241 (945)
.. .........++++|+|+.|++ -+.++.|++||+.++.......+ .. -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00 011123567999999985554 45578999999987653211100 00 11346
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC--------------CCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF--------------DDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~--------------~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
.++|+++|.++++-+.++.|++||..++........ -....+++++++|+.+++-+.++.|++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 789999999888888999999999988776544221 125789999999998888888999999998
Q ss_pred CCCC
Q 002266 308 VVPS 311 (945)
Q Consensus 308 ~~~~ 311 (945)
....
T Consensus 888 ~~~~ 891 (1057)
T PLN02919 888 NKGE 891 (1057)
T ss_pred CCCc
Confidence 6544
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=132.16 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=157.6
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
..|.++.=+|...+.++++ .||.|++|....+..+...-......|+.+.|+.+|+.+..+..||.+.+|... .+...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs-~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGS-QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecC-CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 4577877889999888886 999999998876654333323334889999999999999999999999999986 44455
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEE---CCCcEEEEEcCCC-eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAG---DDEGIKLINTIDG-SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs---~Dg~I~iwd~~~~-~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
..+.|.....+..|-. ..+++++ +++.+.+||..-. .....-..|.+.++++++-|....|++|+.+|.|++||
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 5667888888888875 5666664 5678999997532 22222278999999999999999999999999999999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCC
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h 236 (945)
++..+.++.++. ++ ...+|++|+..|.|+||++.....+.+++..|
T Consensus 2365 ~rqrql~h~~~~----------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA----------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred hHHHHHHHHhhh----------------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 999888777652 44 56789999999999999999888887777544
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=1.9e-07 Score=107.17 Aligned_cols=257 Identities=15% Similarity=0.106 Sum_probs=161.6
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEE
Q 002266 28 QAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIR 107 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~ 107 (945)
++..+++++ .++.+..+|..++..... ... .+.+.+.... .+..++.++.+|.|+.||..+|+.+.........+.
T Consensus 104 ~~~~v~v~~-~~g~l~ald~~tG~~~W~-~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGT-EKGEVIALDAEDGKELWR-AKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEc-CCCEEEEEECCCCcEeee-ecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 355666665 788999999877743322 221 1222221111 345677778899999999999987665543222111
Q ss_pred -----EEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCC----C---EEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 002266 108 -----VLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKG----P---VTGLAFDP--NSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 108 -----~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~----~---V~~lafsp--dg~~Las~s~Dg~I~iwD 173 (945)
.... .+..++++..++.+..+|..+|+.+........ . +..+.-+| .+..+++++.+|.++.||
T Consensus 180 ~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 180 LRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred ecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1111 124677888889999999999987654321100 0 00011111 355788888899999999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
..+++.+...... . ...+. ..+..+++++.+|.|+.+|..+++.+................ .+.+|+
T Consensus 258 ~~tG~~~W~~~~~-----~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~ 324 (377)
T TIGR03300 258 LRSGRVLWKRDAS-----S----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV 324 (377)
T ss_pred CCCCcEEEeeccC-----C----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEE
Confidence 9999877655310 0 11122 256778888889999999999998876653211112222222 467889
Q ss_pred EEECCCeEEEEECCCCeeeeeccCCC-Cee-EEEEecCCCEEEEEEcCCeEEEE
Q 002266 254 TSSLDRQILIWDVGKKLDIDRQKFDD-RIC-CMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~i~~~~~~~-~V~-~la~spdg~~Las~s~DG~I~iW 305 (945)
+++.+|.|++||..+++.+....... .+. +.++. ++.|++++.||.|+.|
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence 99999999999999999988765433 332 22333 3468899999999876
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.95 E-value=3.1e-07 Score=100.62 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=158.8
Q ss_pred EecCCCEEEEEEcCCcEEEEEcCCCeeeeeccc-----------CCCCEEEEE-Eec-CCCEEEEEECCCcEEEEEcCCC
Q 002266 69 LSPNSTCLASGSIDHSVKLYKFPGGEFQTNITR-----------FTLPIRVLA-FNK-SGSMLAAAGDDEGIKLINTIDG 135 (945)
Q Consensus 69 ~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~-----------~~~~V~~l~-fsp-dg~~Lasgs~Dg~I~iwd~~~~ 135 (945)
.+.||+.++. +..|.|++||..+......-.+ +..+..-+. |++ +|.+++..+. |...|.+...+
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3568888877 4568899999766543221111 011111122 333 6788888764 56777776555
Q ss_pred eEEEEEecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIG-TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg-~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~ 214 (945)
-.++ .+|.+.|.-..+.-+++-++.|..|| .+-|||..+++...... .-+.|.++..+|+|++++++..
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--------DLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--------CccceEEEEEcCCCcEEEEEcC
Confidence 4443 35777798888888888899999999 89999998886543322 2366888999999999999998
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCeeeeeccCCCCeeEEEEecCC
Q 002266 215 KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR----QILIWDVGKKLDIDRQKFDDRICCMAWKPIG 290 (945)
Q Consensus 215 dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg----~I~IWD~~~~~~i~~~~~~~~V~~la~spdg 290 (945)
...|.++|+.++.....-. ...+-|+.+.|+|+++++|.+--+| .|+++|+..++..........=.+-+|.|++
T Consensus 422 r~el~vididngnv~~idk-S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 422 RFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred ceEEEEEEecCCCeeEecc-cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence 8999999999998654333 3668899999999999999887665 6999999999888775555555678899999
Q ss_pred CEEEEEE
Q 002266 291 NALAVID 297 (945)
Q Consensus 291 ~~Las~s 297 (945)
++|..-+
T Consensus 501 ryLYfLs 507 (668)
T COG4946 501 RYLYFLS 507 (668)
T ss_pred cEEEEEe
Confidence 9887754
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=1.8e-07 Score=96.13 Aligned_cols=246 Identities=13% Similarity=0.037 Sum_probs=164.3
Q ss_pred EEEECCC-----CCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecC-CCEEEEEEcCCcEEEEEcCCCee
Q 002266 22 SILWDQQ-----AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 22 svafspd-----g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
.+.|.|. -.+|+.+| ..|...+|...+..........|...|+-+.=..+ ..-+..++.|.+++++++..+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG-~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGG-ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEecc-ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 4456552 33566665 89999999988766555666666555443221112 23455668889999998865543
Q ss_pred eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe--EEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS--IAR-VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~--~~~-~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
...+......+.+++++++++++++.++...|..|.+.+.. .+. ......+.-.+..|+.....+|++..||++.||
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 33332222458899999999999999999999999987643 222 233344556788999999999999999999999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEeecC------CC-CCCeEEE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG--ETLAVPGLKNDVVMYDRDTAEKLFSLRG------DH-VQPICFL 243 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg--~~La~gs~dg~I~vwD~~t~~~~~~~~~------~h-~~~I~~l 243 (945)
|++.......... .....|.+.+..+.|++.| .+|+..-.-+.+.+.|++++.....+.. .| ...|..-
T Consensus 231 DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 231 DVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred Eecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 9998654333222 2223477889999999865 3566665678899999999875443322 12 2347777
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCee
Q 002266 244 SWSPNGKYMATSSLDRQILIWDVGKKLD 271 (945)
Q Consensus 244 ~fSpdg~~Lasgs~Dg~I~IWD~~~~~~ 271 (945)
.|+.++.-+.+.+.+ .+.=|++.+...
T Consensus 309 ~f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 309 NFNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred cccCCCcccccccch-hhheeeccccce
Confidence 787776666555543 355566655433
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=6.6e-07 Score=103.50 Aligned_cols=209 Identities=8% Similarity=0.014 Sum_probs=134.4
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCE-EEEEECC---CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM-LAAAGDD---EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE 158 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~-Lasgs~D---g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~ 158 (945)
..|.+-|..... ...+.... .+....|+|+|+. ++..+.+ ..|+++|+.+++..... ...+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 356666654433 34344343 7888999999985 6654443 46999999887654433 3556677788999998
Q ss_pred EEEEE-eCC--CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC-C--eEEEEECCCCcEEEee
Q 002266 159 YLASI-DSI--GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK-N--DVVMYDRDTAEKLFSL 232 (945)
Q Consensus 159 ~Las~-s~D--g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d-g--~I~vwD~~t~~~~~~~ 232 (945)
.|+.. +.+ ..|.++|+.++... .+... ........|+|||+.|+..+.. + .|+++|+.+++.....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~-------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNY-------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccC-------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 77654 333 46888888776533 22211 1112345899999988887642 2 6889999887764333
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcC-CeE
Q 002266 233 RGDHVQPICFLSWSPNGKYMATSSLD---------RQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVM-GKY 302 (945)
Q Consensus 233 ~~~h~~~I~~l~fSpdg~~Lasgs~D---------g~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~D-G~I 302 (945)
.... . ...|||+|++|+..+.. ..|.+.|+.++........ .......|+|||+.|+..+.. +.-
T Consensus 318 ~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 318 FHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred cCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcE
Confidence 2211 1 24899999998877653 3688889988765444332 233468999999988776644 333
Q ss_pred EEEec
Q 002266 303 GVWES 307 (945)
Q Consensus 303 ~iWd~ 307 (945)
.+|-+
T Consensus 393 ~L~~~ 397 (419)
T PRK04043 393 ALGII 397 (419)
T ss_pred EEEEE
Confidence 34433
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=5.3e-08 Score=111.98 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=197.8
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCC------------CEEEEEEcCCc
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS------------TCLASGSIDHS 84 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg------------~~Lasgs~Dg~ 84 (945)
...-.++.|+|.| .|+.+ ....|.|-|..+- +..+.+..|...|+.+.|.|-. -+||++...|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAyg--shslV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYG--SHSLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred cccccccccCccc-eEEEe--cCceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 3446788899988 34444 3567888887665 5677888899999999998721 14666777899
Q ss_pred EEEEEcCCCeeeeecccCCCCEEEEEEec---CC-CEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCE
Q 002266 85 VKLYKFPGGEFQTNITRFTLPIRVLAFNK---SG-SMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEY 159 (945)
Q Consensus 85 V~iwdl~~g~~~~~l~~~~~~V~~l~fsp---dg-~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~ 159 (945)
|.+||+..+..+..+..+..++.+++|-+ +. ..|++-.....|.+|+..+|+.............|+.++| +.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999999988888998999999999986 33 4566667788999999999999888877777888899999 6677
Q ss_pred EEEEeCCCcEEEEEccC-------CeeeeeecccCC------------CCCCCCC------CceEEEEcCCCCEEEEEeC
Q 002266 160 LASIDSIGTVIYWELQS-------GRELHNLKRVAP------------DIGSDPS------SMNVLSWSPDGETLAVPGL 214 (945)
Q Consensus 160 Las~s~Dg~I~iwDl~t-------~~~i~~~~~~~~------------~~~~~~~------~i~~l~~spdg~~La~gs~ 214 (945)
+...+..|.|.+-+.-. ++..+....+.. .....+. ....++|+|.-+.++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 77777788887776532 122211111000 0000000 0123677886665555567
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeeeeec-------cC--------
Q 002266 215 KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNG--KYMATSSLDRQILIWDVGKKLDIDRQ-------KF-------- 277 (945)
Q Consensus 215 dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg--~~Lasgs~Dg~I~IWD~~~~~~i~~~-------~~-------- 277 (945)
...+.++|++-..++..+.- ..+.+.-+.|-|++ ..|++.-.||.+.||-.+........ ..
T Consensus 251 prellv~dle~~~~l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred ccceEEEcchhhceeEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 88999999998888777765 45666677887765 47899999999999975441111110 00
Q ss_pred ---CCCeeEEEEecC-CCEEEEEEcCCeEEEEecCC
Q 002266 278 ---DDRICCMAWKPI-GNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 278 ---~~~V~~la~spd-g~~Las~s~DG~I~iWd~~~ 309 (945)
.-.+....-.|. ...++.--.+|.+.+|.+..
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 112333344554 34555556678888888764
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=2.7e-06 Score=91.44 Aligned_cols=216 Identities=18% Similarity=0.192 Sum_probs=144.1
Q ss_pred EEEEec-CCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEe-cCCCEEEEEECCCcEEEEEcCCCeEEEEEec
Q 002266 66 ALALSP-NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFN-KSGSMLAAAGDDEGIKLINTIDGSIARVLKG 143 (945)
Q Consensus 66 ~la~sp-dg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fs-pdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~ 143 (945)
++.|.+ ++.++++-...+.|..|+..++.... +. ... ...+++. ++ ..|+++... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~-~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID-LPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE-SSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee-cCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578898 66666666678999999988876543 22 222 6777777 56 455555554 456669988865444432
Q ss_pred -----CCCCEEEEEEccCCCEEEEEeCC--------CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEE
Q 002266 144 -----HKGPVTGLAFDPNSEYLASIDSI--------GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLA 210 (945)
Q Consensus 144 -----h~~~V~~lafspdg~~Las~s~D--------g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La 210 (945)
.....+.++++|+|++.++.... |.|..++.. ++....... -...+.++|+|+++.|+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--------~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--------LGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--------ESSEEEEEEETTSSEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--------cccccceEECCcchhee
Confidence 34567899999999977776543 456667766 443332221 13357899999999776
Q ss_pred E-EeCCCeEEEEECCCCc-------EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCC-CCe
Q 002266 211 V-PGLKNDVVMYDRDTAE-------KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFD-DRI 281 (945)
Q Consensus 211 ~-gs~dg~I~vwD~~t~~-------~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~-~~V 281 (945)
+ -+..+.|..|++.... ....+.. ..+....+++..+|++.++....+.|.+++.+ ++.+..+... ..+
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE
Confidence 4 5667889999986322 1122222 22347889999999998888889999999988 7777776554 689
Q ss_pred eEEEEe-cCCCEEEEEE
Q 002266 282 CCMAWK-PIGNALAVID 297 (945)
Q Consensus 282 ~~la~s-pdg~~Las~s 297 (945)
++++|. ++.+.|++.+
T Consensus 228 t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEESTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 999994 6667666654
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=6.8e-09 Score=114.59 Aligned_cols=244 Identities=18% Similarity=0.227 Sum_probs=171.3
Q ss_pred cccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC-------CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEE
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG-------GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIK 128 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~-------g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~ 128 (945)
.+.+|...|+.++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|.++.|-.+.+++++ .||.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcce
Confidence 4668999999888777778899999999999999853 2356678889999999999998887776 488999
Q ss_pred EEEcCCCeEEEEEe--cCCCCEEEEEEcc--CCCEEE-EEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEc
Q 002266 129 LINTIDGSIARVLK--GHKGPVTGLAFDP--NSEYLA-SIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWS 203 (945)
Q Consensus 129 iwd~~~~~~~~~l~--~h~~~V~~lafsp--dg~~La-s~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s 203 (945)
+||.--+..+..+. ...+.+..+..-+ +...++ .++...+|+++|.+...-...++... .......+.+++..
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn--a~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN--APGPNALTRAIAVA 885 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc--CCCCchheeEEEec
Confidence 99988777654332 1122333333333 233343 34678899999999987666655321 12334567899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEE-EECCCCeeeeeccC-CCCe
Q 002266 204 PDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILI-WDVGKKLDIDRQKF-DDRI 281 (945)
Q Consensus 204 pdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~I-WD~~~~~~i~~~~~-~~~V 281 (945)
+.|+.++++-.+|.|.+.|.++|+.+..+.. .......++ .|....|+....|.++.| |...++......+. ..+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 9999999999999999999999998877654 333333333 456678888888999999 98777655444322 1111
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 282 CCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 282 ~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
. -...-|..|+++.....+++|..
T Consensus 964 h--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 964 H--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred h--hhhccCceeEEeccCcEEEEEec
Confidence 1 01123567888777777888854
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.84 E-value=2.6e-07 Score=96.23 Aligned_cols=241 Identities=15% Similarity=0.161 Sum_probs=158.8
Q ss_pred CCEEEEEEC---CCCC-EEEEEEcCCCeEEEEcCCCCccccccccc---c---ccceEEEEEecCCCEEEEEEcCCcEEE
Q 002266 18 ASFCSILWD---QQAH-HLVTASSSETTISIHDPLLPSNLPKILRH---H---RDGVTALALSPNSTCLASGSIDHSVKL 87 (945)
Q Consensus 18 ~~V~svafs---pdg~-~L~t~g~~dg~V~IWd~~~~~~~~~~l~~---h---~~~V~~la~spdg~~Lasgs~Dg~V~i 87 (945)
..+..+.|. .+|. .|+-+ ...|.|.++...... ....+.+ - .....++.|++.+..++++-.+|.+.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a-~a~G~i~~~r~~~~~-ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDA-HARGQIQLYRNDEDE-SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccceeeeeeccCCccceeeec-cccceEEEEeeccce-eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 456666665 2455 33333 478888888654321 1111211 1 112457889999989999999999996
Q ss_pred EEcCCCeeee--ecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCC-CeEEEE-EecCCCCEEEEEEcc-CCCEEE
Q 002266 88 YKFPGGEFQT--NITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINTID-GSIARV-LKGHKGPVTGLAFDP-NSEYLA 161 (945)
Q Consensus 88 wdl~~g~~~~--~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~-~~~~~~-l~~h~~~V~~lafsp-dg~~La 161 (945)
.+........ ..+.|..+++...|+. +.+.+.+|++|+.+..||++. ++.+.. .+.|...|.+|.-+| .+.+++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 6655554443 7788999999999986 457899999999999999983 343333 567889999999887 577999
Q ss_pred EEeCCCcEEEEEccC-CeeeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcE----EEeecCC
Q 002266 162 SIDSIGTVIYWELQS-GRELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPGLKNDVVMYDRDTAEK----LFSLRGD 235 (945)
Q Consensus 162 s~s~Dg~I~iwDl~t-~~~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs~dg~I~vwD~~t~~~----~~~~~~~ 235 (945)
+|+.|-.|++||.++ ++++..-. ..+.|.++.++|. ...++.++.-+..+|.+...... +......
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~--------v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~ 299 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK--------VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI 299 (339)
T ss_pred EeccccceeeeehhcccCccccCc--------cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc
Confidence 999999999999985 44443321 2377999999993 22333334444566666654321 2222233
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCeEE-EEECCC
Q 002266 236 HVQPICFLSWSPNGKYMATSS-LDRQIL-IWDVGK 268 (945)
Q Consensus 236 h~~~I~~l~fSpdg~~Lasgs-~Dg~I~-IWD~~~ 268 (945)
|.+-+..-.|.....+|||++ .|+.|+ +|-.-+
T Consensus 300 hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 300 HDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 666666666755456788875 366644 665443
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1e-06 Score=101.65 Aligned_cols=303 Identities=18% Similarity=0.213 Sum_probs=196.6
Q ss_pred ccccccccccccCCCCCEEEEEECCC-----------CCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEec
Q 002266 3 VRSVKLREAHKCGNAASFCSILWDQQ-----------AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSP 71 (945)
Q Consensus 3 ~~~i~~~~aH~~gh~~~V~svafspd-----------g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp 71 (945)
.+.+...+.|. ..|+.+.|.|- ...+++.+.-.|.|.|||..... ....+..|.+++..++|-+
T Consensus 45 ~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s-~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 45 LQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS-VINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred hhhhhccccCc----cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-hhhhhcCCCcchhheeeee
Confidence 34444455555 88999999872 23455555678999999987763 4556778899999999987
Q ss_pred ---CC-CEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEec-CCCEEEEEECCCcEEEEEc--------------
Q 002266 72 ---NS-TCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK-SGSMLAAAGDDEGIKLINT-------------- 132 (945)
Q Consensus 72 ---dg-~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~-------------- 132 (945)
+. .+|++-.....|.+|+..+|+.............|+.+.| |.+.+..-+..|.+.+.+.
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 33 4666666678999999999987766665556666666666 4444444444444443332
Q ss_pred ------------------------------------------------------------CCCeEEEEEecCCCCEEEEE
Q 002266 133 ------------------------------------------------------------IDGSIARVLKGHKGPVTGLA 152 (945)
Q Consensus 133 ------------------------------------------------------------~~~~~~~~l~~h~~~V~~la 152 (945)
+-..++....-..+.+.-+.
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~ 279 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVD 279 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeE
Confidence 22222222222233344455
Q ss_pred EccCC--CEEEEEeCCCcEEEEEccC----------------Ceeeeee---cccCCCC---------------------
Q 002266 153 FDPNS--EYLASIDSIGTVIYWELQS----------------GRELHNL---KRVAPDI--------------------- 190 (945)
Q Consensus 153 fspdg--~~Las~s~Dg~I~iwDl~t----------------~~~i~~~---~~~~~~~--------------------- 190 (945)
|-|++ ..|++...||.+.+|-.+. +.+.+.+ +...+..
T Consensus 280 vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~ 359 (1062)
T KOG1912|consen 280 VLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDST 359 (1062)
T ss_pred eccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhH
Confidence 55654 4788899999999997654 2111111 1000000
Q ss_pred --------------------------------------------CCCCCCceEEEEc-----------CCC-------CE
Q 002266 191 --------------------------------------------GSDPSSMNVLSWS-----------PDG-------ET 208 (945)
Q Consensus 191 --------------------------------------------~~~~~~i~~l~~s-----------pdg-------~~ 208 (945)
+.|.....+...+ |.| .+
T Consensus 360 ~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pL 439 (1062)
T KOG1912|consen 360 FWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPL 439 (1062)
T ss_pred HHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeee
Confidence 0011111222111 112 25
Q ss_pred EEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEE---------CCCeEEEEECCCCeeeeecc---
Q 002266 209 LAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSS---------LDRQILIWDVGKKLDIDRQK--- 276 (945)
Q Consensus 209 La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs---------~Dg~I~IWD~~~~~~i~~~~--- 276 (945)
+++|+..|+|.++|+.++..-..+.. |.+.|.++.|--+.+++-.+. .-+.+.|-|+++|......+
T Consensus 440 vAvGT~sGTV~vvdvst~~v~~~fsv-ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAVAASFSV-HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred EEeecCCceEEEEEecchhhhhhhcc-cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 78899999999999999887777765 899999999987766554332 23468889999987766542
Q ss_pred -CCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 277 -FDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 277 -~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
-..+|..+..+..|++|+..-.+.-+.+||+....
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 35689999999999999999999999999985544
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=4.9e-06 Score=89.47 Aligned_cols=223 Identities=17% Similarity=0.224 Sum_probs=144.0
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEe-cCCCEEEEEEcCCcEEEEEcCCCeeeeecc
Q 002266 22 SILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALS-PNSTCLASGSIDHSVKLYKFPGGEFQTNIT 100 (945)
Q Consensus 22 svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~s-pdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~ 100 (945)
+++|.+....|+.+.-..+.|..|+..+... ..+.. .....+++. +++ .|+.+... .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~--~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDL--PGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEES--SSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEec--CCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 5679985555555555789999999876532 22222 226777888 565 45555554 46666998886554443
Q ss_pred c-----CCCCEEEEEEecCCCEEEEEECC--------CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEE-EEeCC
Q 002266 101 R-----FTLPIRVLAFNKSGSMLAAAGDD--------EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLA-SIDSI 166 (945)
Q Consensus 101 ~-----~~~~V~~l~fspdg~~Lasgs~D--------g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~La-s~s~D 166 (945)
. ......++++.++|++.++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeeccccc
Confidence 2 23467899999999977766543 457777776 5543333 3446678999999999776 45667
Q ss_pred CcEEEEEccCCee-eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEE
Q 002266 167 GTVIYWELQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSW 245 (945)
Q Consensus 167 g~I~iwDl~t~~~-i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~f 245 (945)
+.|..|++..... +...... ............+++..+|++.++....+.|.+++.. ++.+..+..+ ...+++++|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVF-IDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAF 232 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEE-EE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEE
T ss_pred ceeEEEeccccccceeeeeeE-EEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEE
Confidence 8899999864322 2111100 0011111335679999999988887789999999998 8888777653 458999999
Q ss_pred c-CCCCEEEEE
Q 002266 246 S-PNGKYMATS 255 (945)
Q Consensus 246 S-pdg~~Lasg 255 (945)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 4 665655544
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.5e-08 Score=110.24 Aligned_cols=276 Identities=15% Similarity=0.202 Sum_probs=188.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc------cccccccccccceEEEEEecCCCEEEEEEcCCcEEEE
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPS------NLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLY 88 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~------~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iw 88 (945)
||...|..++--.+.+.+++++ .|.+|++|.+.... .+..++..|+.+|.++.|-.+-+++++ .||-|.+|
T Consensus 733 GH~~~iRai~AidNENSFiSAS-kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISAS-KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeecc-CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceee
Confidence 7778888887666677777775 89999999875433 244567889999999999998888776 47889999
Q ss_pred EcCCCeeeeeccc--CCCCEEEEEEec--CCCEEEEE-ECCCcEEEEEcCCCeEEEEEe-----cCCCCEEEEEEccCCC
Q 002266 89 KFPGGEFQTNITR--FTLPIRVLAFNK--SGSMLAAA-GDDEGIKLINTIDGSIARVLK-----GHKGPVTGLAFDPNSE 158 (945)
Q Consensus 89 dl~~g~~~~~l~~--~~~~V~~l~fsp--dg~~Lasg-s~Dg~I~iwd~~~~~~~~~l~-----~h~~~V~~lafspdg~ 158 (945)
|.--|.....+.. ..+.+..+...+ +...+..| +...+|+++|.+.......++ +...-+++++..+.|+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN 889 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc
Confidence 9776665543221 122233333333 33444444 678899999999887665554 3346689999999999
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEE-EECCCCcEEEeecCCCC
Q 002266 159 YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVM-YDRDTAEKLFSLRGDHV 237 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~v-wD~~t~~~~~~~~~~h~ 237 (945)
+++++-.+|+|.+.|.++|+.+..+...... ...++ .|..+.|+....|..+.+ |..-.+....+.+. ..
T Consensus 890 ~lAa~LSnGci~~LDaR~G~vINswrpmecd-------llqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp-pp 960 (1034)
T KOG4190|consen 890 KLAAALSNGCIAILDARNGKVINSWRPMECD-------LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP-PP 960 (1034)
T ss_pred hhhHHhcCCcEEEEecCCCceeccCCcccch-------hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC-CC
Confidence 9999999999999999999988766532211 11121 355667777777888888 88776655554443 22
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 002266 238 QPICFLSWSPNGKYMATSSLDRQILIWDVGK-------KLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGV 304 (945)
Q Consensus 238 ~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~-------~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~i 304 (945)
.+..-+ -.-|.-|+++.....+.||.-.. -..+....+.+..++++--|-...+..|...|.|.+
T Consensus 961 epahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 222111 12355677777667777874211 112233445678899999998888888888888875
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=4.2e-08 Score=112.12 Aligned_cols=281 Identities=14% Similarity=0.180 Sum_probs=187.0
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccccccc--ceEEEEEecCC--CEEEEEEcCCcEEEEEcCC-
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRD--GVTALALSPNS--TCLASGSIDHSVKLYKFPG- 92 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~--~V~~la~spdg--~~Lasgs~Dg~V~iwdl~~- 92 (945)
+.+.++..+|.|+-+++++ .- -+.+-|+..+...+..+. |.. .|-.+.|+|.. .+-++......-.+|++..
T Consensus 25 ~~~~a~si~p~grdi~lAs-r~-gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLAS-RQ-GLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred Ccccceeeccccchhhhhh-hc-CeEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 5578888999999999986 33 366677766655444443 332 36678888743 4455555566677898753
Q ss_pred --CeeeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-EEEEEecCCCCEEEEEEccCCCEEEEEeCCCc
Q 002266 93 --GEFQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINTIDGS-IARVLKGHKGPVTGLAFDPNSEYLASIDSIGT 168 (945)
Q Consensus 93 --g~~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~-~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~ 168 (945)
......+.+|...|+.+.|+|.. ..+++++-|..+..||++... .+..+..-......++|+.....+.+.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 33344567899999999999854 578899999999999998754 44444444456678999985555555666778
Q ss_pred EEEEEccCCe-eeeeecccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEc
Q 002266 169 VIYWELQSGR-ELHNLKRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWS 246 (945)
Q Consensus 169 I~iwDl~t~~-~i~~~~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fS 246 (945)
|++||++.|. .+..++. +...++.+.|.. .-..+.+++.|++|++||................+|..-.+-
T Consensus 182 i~vwd~r~gs~pl~s~K~-------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKG-------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred eEEEeccCCCcceEEecc-------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 9999999874 4455543 345566677765 344677888999999999875433222211245677777777
Q ss_pred CCC--CEEEEEECCCeEEEEE---------CCC-Ceeeee-ccCCCCeeEEEEecCCC----------EEEEEEcCCeEE
Q 002266 247 PNG--KYMATSSLDRQILIWD---------VGK-KLDIDR-QKFDDRICCMAWKPIGN----------ALAVIDVMGKYG 303 (945)
Q Consensus 247 pdg--~~Lasgs~Dg~I~IWD---------~~~-~~~i~~-~~~~~~V~~la~spdg~----------~Las~s~DG~I~ 303 (945)
|-| .++.-.-.+..+.+++ +.+ ...+.. .+|.+.|..+.|...+. .|++-+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 743 3333222233444443 322 233443 67888888777765322 699999999999
Q ss_pred EEecC
Q 002266 304 VWESV 308 (945)
Q Consensus 304 iWd~~ 308 (945)
+|-+.
T Consensus 335 lWpI~ 339 (1081)
T KOG0309|consen 335 LWPID 339 (1081)
T ss_pred eeecc
Confidence 99764
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.7e-06 Score=98.92 Aligned_cols=249 Identities=14% Similarity=0.186 Sum_probs=175.9
Q ss_pred cccccccccCCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCcccccccc-ccccceEEEEEecCCCEEEEEEcCCc
Q 002266 6 VKLREAHKCGNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILR-HHRDGVTALALSPNSTCLASGSIDHS 84 (945)
Q Consensus 6 i~~~~aH~~gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~-~h~~~V~~la~spdg~~Lasgs~Dg~ 84 (945)
+.+..+.. ||.+.|.-+.|+...+.|-++ ..+|.|.||-+..+.-....+. ...+-|.+++|+.||..++..-.||.
T Consensus 61 LsmNQtLe-GH~~sV~vvTWNe~~QKLTtS-Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 61 LSMNQTLE-GHNASVMVVTWNENNQKLTTS-DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cchhhhhc-cCcceEEEEEecccccccccc-CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 34556667 899999999999888877766 5999999999877754333333 34567899999999999999999999
Q ss_pred EEEEEcCCCeeeee-cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe-------EEE----EEecCCCCEEEEE
Q 002266 85 VKLYKFPGGEFQTN-ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS-------IAR----VLKGHKGPVTGLA 152 (945)
Q Consensus 85 V~iwdl~~g~~~~~-l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-------~~~----~l~~h~~~V~~la 152 (945)
|.+=.+...+.... +. ......+.|++|.+.++.+-..|.+.++|....- +.. .+......|..+.
T Consensus 139 vIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 139 VIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred EEEEeeccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 98877765443221 22 1224478899999999999899999999975421 111 1122223456666
Q ss_pred Ec--------cCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC--------
Q 002266 153 FD--------PNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN-------- 216 (945)
Q Consensus 153 fs--------pdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg-------- 216 (945)
|. |+...|+++-.+|.+.|..-.+......+. .+-.+..+.|+++|..|++++.+.
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~ 288 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDS 288 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCcccccCcccc
Confidence 64 467789999999998887654433222222 123456789999999999988642
Q ss_pred -eEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002266 217 -DVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 217 -~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.|.+|..- |+.+.+++. ....|++++|-..|-.+|.+- |+.|++=+++..
T Consensus 289 n~v~Fysp~-G~i~gtlkv-pg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ 339 (1189)
T KOG2041|consen 289 NKVHFYSPY-GHIVGTLKV-PGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPE 339 (1189)
T ss_pred ceEEEeccc-hhheEEEec-CCceeeeeEEcCCceEEEEEe-cceEEEEeeccc
Confidence 46666543 666666665 567899999988887777765 888888777653
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.75 E-value=5.1e-06 Score=89.64 Aligned_cols=232 Identities=16% Similarity=0.145 Sum_probs=153.7
Q ss_pred EEEECCCCCEEEEEEcCCC-eEEEEcCCCCccccccccccccceE--EEEEecCCCEEEEEEc-----CCcEEEEEcC-C
Q 002266 22 SILWDQQAHHLVTASSSET-TISIHDPLLPSNLPKILRHHRDGVT--ALALSPNSTCLASGSI-----DHSVKLYKFP-G 92 (945)
Q Consensus 22 svafspdg~~L~t~g~~dg-~V~IWd~~~~~~~~~~l~~h~~~V~--~la~spdg~~Lasgs~-----Dg~V~iwdl~-~ 92 (945)
.++.+|.....++.+-.-| ...+||..++.. ...+....+.-. .-.|++||++|++.-. .|.|-|||.. +
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4678895554444433433 557889877643 333332222211 4579999999998643 4899999998 5
Q ss_pred CeeeeecccCCCCEEEEEEecCCCEEEEEEC------------------CCcEEEEEcCCCeEEEE--E--ecCCCCEEE
Q 002266 93 GEFQTNITRFTLPIRVLAFNKSGSMLAAAGD------------------DEGIKLINTIDGSIARV--L--KGHKGPVTG 150 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~------------------Dg~I~iwd~~~~~~~~~--l--~~h~~~V~~ 150 (945)
.+.+..+..+.-....+.+.|||+.|+++.. +.++.+.|..+|+.+.. + .-|.-.|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6667777777777788999999988888631 23467778888887766 4 337889999
Q ss_pred EEEccCCCEEEEEeCCCc-------EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe-CCCeEEEEE
Q 002266 151 LAFDPNSEYLASIDSIGT-------VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG-LKNDVVMYD 222 (945)
Q Consensus 151 lafspdg~~Las~s~Dg~-------I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs-~dg~I~vwD 222 (945)
++++++|..++..-..|. |.+++ .+..+..+.........-...+-+|+++++|.++++.+ ..+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 999999987776654442 33333 33333333222111122335678899999998886665 467899999
Q ss_pred CCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 002266 223 RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQI 261 (945)
Q Consensus 223 ~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I 261 (945)
..++..+....- ..++.++-.+++ ++++.+ .|.+
T Consensus 246 ~~tg~~~~~~~l---~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 246 AATGRLLGSVPL---PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CCCCCEeecccc---CceeeeeecCCc-eEEeCC-CccE
Confidence 999988776643 456777777777 666655 3443
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-07 Score=102.08 Aligned_cols=263 Identities=17% Similarity=0.203 Sum_probs=182.6
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC--CccccccccccccceEEEEEecCCCEEEEEEc-CCcEEEEEcCC
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLL--PSNLPKILRHHRDGVTALALSPNSTCLASGSI-DHSVKLYKFPG 92 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~--~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~-Dg~V~iwdl~~ 92 (945)
|...|+.|.-+ -.+++++++ -||.++.|.-.. +......+..|...|.+++.+-+|.++++++. |..++++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqAS-lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQAS-LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeee-cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 44777776544 566777775 999999997543 22445566778899999999999999999887 99999999987
Q ss_pred CeeeeecccCCCCEEEEEEe-cCC---CEEEEE-ECCCcEEEEEcCCCe--EEEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002266 93 GEFQTNITRFTLPIRVLAFN-KSG---SMLAAA-GDDEGIKLINTIDGS--IARVLKGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 93 g~~~~~l~~~~~~V~~l~fs-pdg---~~Lasg-s~Dg~I~iwd~~~~~--~~~~l~~h~~~V~~lafspdg~~Las~s~ 165 (945)
-.....+.-...| ..+.|. ..| ..|+++ -+++.+.|+|-.... ....-.-|..+|.++.+.+-+..+++...
T Consensus 86 ~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 6655433322111 122232 223 133333 457889999976543 33344568999999999999999999999
Q ss_pred CCcEEEEEccC------CeeeeeecccC--CCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC--
Q 002266 166 IGTVIYWELQS------GRELHNLKRVA--PDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD-- 235 (945)
Q Consensus 166 Dg~I~iwDl~t------~~~i~~~~~~~--~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~-- 235 (945)
.|.|..|.... ......++... -..........++.|+|+|..+.+-+.|..|++++.++++.++.+...
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998763 11111111100 011122355678999999999999999999999999988755443210
Q ss_pred -----------------------------C-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCee
Q 002266 236 -----------------------------H-VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRIC 282 (945)
Q Consensus 236 -----------------------------h-~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~ 282 (945)
| ...-+.++|...|++|+.++.=| |+|.++.++.++...+-...|.
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir 320 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIR 320 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhh
Confidence 1 11235577888999999998766 9999999999988876555444
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=4.1e-06 Score=89.18 Aligned_cols=227 Identities=19% Similarity=0.128 Sum_probs=140.8
Q ss_pred CCeEEEEcCCCCcccccccccc-ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCE
Q 002266 39 ETTISIHDPLLPSNLPKILRHH-RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSM 117 (945)
Q Consensus 39 dg~V~IWd~~~~~~~~~~l~~h-~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~ 117 (945)
+|.|..||..++......-... .....+. ..+++..+++++.++.|..||..+|+....... ..++.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 5677888876664433321111 1222222 233566777778999999999999998766553 22222112 224566
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEE-ecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCC
Q 002266 118 LAAAGDDEGIKLINTIDGSIARVL-KGHK---GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193 (945)
Q Consensus 118 Lasgs~Dg~I~iwd~~~~~~~~~l-~~h~---~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~ 193 (945)
+++++.++.|..+|..+|+..... .... .....+.....+..++++..++.|..+|+.+|+.+.......+.....
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999988874 3221 112233333347888888889999999999999988776422211110
Q ss_pred ---CCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 002266 194 ---PSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 194 ---~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
...+..-....++ .+++++.++.+..+|..+++.+.... ...+.. .....+..|+.++.++.|..||+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 0111222222244 77777777764444999998765333 122222 145677888888899999999999998
Q ss_pred eee
Q 002266 271 DID 273 (945)
Q Consensus 271 ~i~ 273 (945)
.+-
T Consensus 234 ~~W 236 (238)
T PF13360_consen 234 VVW 236 (238)
T ss_dssp EEE
T ss_pred EEe
Confidence 753
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=2.7e-06 Score=87.59 Aligned_cols=248 Identities=13% Similarity=0.134 Sum_probs=157.0
Q ss_pred CCCeEEEEcCCCCcc-ccccccccccceEEEEEec-----CCCEEEEEEcCCcEEEEEcCCCeee-eecccCCCCEEEEE
Q 002266 38 SETTISIHDPLLPSN-LPKILRHHRDGVTALALSP-----NSTCLASGSIDHSVKLYKFPGGEFQ-TNITRFTLPIRVLA 110 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~-~~~~l~~h~~~V~~la~sp-----dg~~Lasgs~Dg~V~iwdl~~g~~~-~~l~~~~~~V~~l~ 110 (945)
....|.+|+..+..+ ..... ..+.|.| ...+|+.|+..|...+|...+.+.. .....+...|.-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 344677888765431 11111 3455555 3458899999999999998765432 22222222222111
Q ss_pred Ee-cCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCee-eeeecccCC
Q 002266 111 FN-KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRE-LHNLKRVAP 188 (945)
Q Consensus 111 fs-pdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~-i~~~~~~~~ 188 (945)
=. -...-+..++.|.+++++++.-+.....+....-.+.+++++++++++++.+....|..|.+..... +..+.. .
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a- 200 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-A- 200 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-c-
Confidence 10 1123466778888888888765543332222223388999999999999999999999999876432 222111 1
Q ss_pred CCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE----eecCCCCCCeEEEEEcCCCC--EEEEEECCCeEE
Q 002266 189 DIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLF----SLRGDHVQPICFLSWSPNGK--YMATSSLDRQIL 262 (945)
Q Consensus 189 ~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~----~~~~~h~~~I~~l~fSpdg~--~Lasgs~Dg~I~ 262 (945)
.....-.+..|+.....+|+++.||++.|||++...... .-...|.+.+..+.|++.|. +|...-.-+.+.
T Consensus 201 ---~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 201 ---PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred ---ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 111223568899999999999999999999998765332 22335889999999998664 455554567899
Q ss_pred EEECCCCeeeeecc--------CC-CCeeEEEEecCCCEEEEEE
Q 002266 263 IWDVGKKLDIDRQK--------FD-DRICCMAWKPIGNALAVID 297 (945)
Q Consensus 263 IWD~~~~~~i~~~~--------~~-~~V~~la~spdg~~Las~s 297 (945)
|.|+++....+.+. |. ..|..-.|+.++..+.+.+
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 99999876655432 21 2366666766665554443
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=8.9e-08 Score=109.50 Aligned_cols=244 Identities=16% Similarity=0.229 Sum_probs=165.0
Q ss_pred CCEEEEEECCCC--CEEEEEEcCCCeEEEEcCCCCc--cccccccccccceEEEEEecC-CCEEEEEEcCCcEEEEEcCC
Q 002266 18 ASFCSILWDQQA--HHLVTASSSETTISIHDPLLPS--NLPKILRHHRDGVTALALSPN-STCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 18 ~~V~svafspdg--~~L~t~g~~dg~V~IWd~~~~~--~~~~~l~~h~~~V~~la~spd-g~~Lasgs~Dg~V~iwdl~~ 92 (945)
-.|-.+.|+|.. .+-++.. ....-.||++.... .+...+.+|...|+.+.|+|. ...|++++-|..|..||+++
T Consensus 68 w~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred chhcceecccCCCCceeEEec-CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 346667788753 3444443 45566789876543 344456789999999999995 47899999999999999987
Q ss_pred Ce-eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-eEEEEEecCCCCEEEEEEccC-CCEEEEEeCCCcE
Q 002266 93 GE-FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG-SIARVLKGHKGPVTGLAFDPN-SEYLASIDSIGTV 169 (945)
Q Consensus 93 g~-~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~~~~~l~~h~~~V~~lafspd-g~~Las~s~Dg~I 169 (945)
-. .......-......+.|+-....+.+.+....|.+||++.| .++..+++|...|..+.|..- ...+.+++.||+|
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCce
Confidence 54 23333333456678999986666666677788999999875 577888999999999999762 3467889999999
Q ss_pred EEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE--EeCCCeEEEEEC---------CC-CcEEEeecCCCC
Q 002266 170 IYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV--PGLKNDVVMYDR---------DT-AEKLFSLRGDHV 237 (945)
Q Consensus 170 ~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~--gs~dg~I~vwD~---------~t-~~~~~~~~~~h~ 237 (945)
+.||............ ....++..-++-|-|.-.++ .-.+..+.+++. .+ .++++.|.+ |.
T Consensus 227 kfw~y~kSt~e~~~~v------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~ 299 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRTV------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HD 299 (1081)
T ss_pred eeecccccccccceec------cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cc
Confidence 9999865432211110 11244555566663332222 111223334333 22 346788887 88
Q ss_pred CCeEEEEEcCCC----------CEEEEEECCCeEEEEECCCC
Q 002266 238 QPICFLSWSPNG----------KYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 238 ~~I~~l~fSpdg----------~~Lasgs~Dg~I~IWD~~~~ 269 (945)
..|....|-..+ -.|+|-+.|..+++|-+.+.
T Consensus 300 D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 300 DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 888777775422 25899999999999988763
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=7e-06 Score=86.14 Aligned_cols=227 Identities=21% Similarity=0.237 Sum_probs=134.0
Q ss_pred EEEecCCCEEEEEEcCCcEEEEEcCCC--eeeee--ccc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE
Q 002266 67 LALSPNSTCLASGSIDHSVKLYKFPGG--EFQTN--ITR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL 141 (945)
Q Consensus 67 la~spdg~~Lasgs~Dg~V~iwdl~~g--~~~~~--l~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l 141 (945)
++.+.+|++||.. .|..|.|-..++. ..+.. +.. ..-.-+.++||||+.+||.+...|+|+++|+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 5667889888774 5667777655432 11111 111 22346789999999999999999999999996533 3333
Q ss_pred ec-------CCCCEEEEEEccCC------CEEEEEeCCCcEEEEEccCC-----eeeeeecccCCCCCCCCCCceEEEEc
Q 002266 142 KG-------HKGPVTGLAFDPNS------EYLASIDSIGTVIYWELQSG-----RELHNLKRVAPDIGSDPSSMNVLSWS 203 (945)
Q Consensus 142 ~~-------h~~~V~~lafspdg------~~Las~s~Dg~I~iwDl~t~-----~~i~~~~~~~~~~~~~~~~i~~l~~s 203 (945)
.. -...|.++.|.+.. ..|++-...|.++-|-+..+ +..+.+... ...+..|+++.++
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~----~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS----SHYPHGINSAVYH 156 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec----ccCCCceeEEEEc
Confidence 22 23567777776522 24666677888887776432 233333221 1345679999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCE--EEEEECCC------eEEEEECCCCeeeee-
Q 002266 204 PDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY--MATSSLDR------QILIWDVGKKLDIDR- 274 (945)
Q Consensus 204 pdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~--Lasgs~Dg------~I~IWD~~~~~~i~~- 274 (945)
|.-++|++|+.... ..+. .+ .....+++-..-.+..| .++...|+ +..+|.+-+......
T Consensus 157 p~h~LLlVgG~~~~------~~~~--s~---a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 157 PKHRLLLVGGCEQN------QDGM--SK---ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCCEEEEeccCCC------CCcc--cc---ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 99888888875332 0000 00 01112222111111111 01111111 123444444333333
Q ss_pred ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 275 QKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 275 ~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
......|..|..+|+|..||+...+|.|.+|++..-
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 234678999999999999999999999999998643
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.67 E-value=1.3e-05 Score=84.21 Aligned_cols=231 Identities=14% Similarity=0.157 Sum_probs=135.9
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEcCCCCcc-c---cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee
Q 002266 23 ILWDQQAHHLVTASSSETTISIHDPLLPSN-L---PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 23 vafspdg~~L~t~g~~dg~V~IWd~~~~~~-~---~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~ 98 (945)
++.+.+|+.||+. .|..|.|-.....-. + ..+-+...-.=+-++|+||+.+||.+...|+|++||+....+ ..
T Consensus 3 ~~~~~~Gk~lAi~--qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL--QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred eeecCCCcEEEEE--eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EE
Confidence 5678999999987 588888876443211 1 111222223357899999999999999999999999865432 22
Q ss_pred ccc-------CCCCEEEEEEecCC------CEEEEEECCCcEEEEEcCC-----CeEEEEEe--c-CCCCEEEEEEccCC
Q 002266 99 ITR-------FTLPIRVLAFNKSG------SMLAAAGDDEGIKLINTID-----GSIARVLK--G-HKGPVTGLAFDPNS 157 (945)
Q Consensus 99 l~~-------~~~~V~~l~fspdg------~~Lasgs~Dg~I~iwd~~~-----~~~~~~l~--~-h~~~V~~lafspdg 157 (945)
+.. ....|..+.|.+.. ..|++-...|.++-|-+.. ......+. . +...|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 23456677776421 2466667787777665432 12233332 2 46789999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEE---cCCCCEEEEEeCCCe------EEEEECCCCcE
Q 002266 158 EYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSW---SPDGETLAVPGLKND------VVMYDRDTAEK 228 (945)
Q Consensus 158 ~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~---spdg~~La~gs~dg~------I~vwD~~t~~~ 228 (945)
++|++|+.... ..+. .. .....+++-.. .|..+. +....++. ..+|.+-+.+
T Consensus 160 ~LLlVgG~~~~------~~~~--s~---------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~- 220 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM--SK---------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFK- 220 (282)
T ss_pred CEEEEeccCCC------CCcc--cc---------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeecccee-
Confidence 98888765322 0000 00 00111111111 111111 11111111 1233322221
Q ss_pred EEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002266 229 LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ 275 (945)
Q Consensus 229 ~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~ 275 (945)
.+...+.....|..|..||||.+||+...+|.|.+|++.+-......
T Consensus 221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 12222334578999999999999999999999999999887666553
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=3.1e-07 Score=95.85 Aligned_cols=244 Identities=20% Similarity=0.324 Sum_probs=165.6
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe-----eeeecccCC------------CCEEEEEEecCC--CEEEEE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE-----FQTNITRFT------------LPIRVLAFNKSG--SMLAAA 121 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~-----~~~~l~~~~------------~~V~~l~fspdg--~~Lasg 121 (945)
...|+++.|...|.||++|...|.|.+|.-.... ....++.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999754322 112233332 246778887654 457777
Q ss_pred ECCCcEEEEEcCCCe-------------------------------------EE-----EEE-ecCCCCEEEEEEccCCC
Q 002266 122 GDDEGIKLINTIDGS-------------------------------------IA-----RVL-KGHKGPVTGLAFDPNSE 158 (945)
Q Consensus 122 s~Dg~I~iwd~~~~~-------------------------------------~~-----~~l-~~h~~~V~~lafspdg~ 158 (945)
+.|.+|++|-+.... .+ +.. ..|...|.+++|+.+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999875320 00 001 24677789999999988
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeeecccCCCC-CCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCc------EEE
Q 002266 159 YLASIDSIGTVIYWELQSGRELHNLKRVAPDI-GSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAE------KLF 230 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~-~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~------~~~ 230 (945)
.++++. |-.|.+|++.-......+....+.. ..-...|++..|+| ....+...+..|.|++-|++... .+.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 888764 6789999987544333332222211 11123467889999 46677888889999999998432 111
Q ss_pred ee--cC-------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeeeecc-C------------CCCe---eEE
Q 002266 231 SL--RG-------DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKK-LDIDRQK-F------------DDRI---CCM 284 (945)
Q Consensus 231 ~~--~~-------~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~-~~i~~~~-~------------~~~V---~~l 284 (945)
.. .+ .-...|..+.|+++|+|+++-+. -+|+|||+... .++.++. | ...| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 11 11 12346888999999999998764 67999999653 3333321 1 2333 357
Q ss_pred EEecCCCEEEEEEcCCeEEEEe
Q 002266 285 AWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 285 a~spdg~~Las~s~DG~I~iWd 306 (945)
.|+.+...+.+|+......+|-
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EecCCcccccccccccceeeec
Confidence 8898999999999999999986
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.66 E-value=1.1e-05 Score=85.87 Aligned_cols=219 Identities=16% Similarity=0.103 Sum_probs=142.9
Q ss_pred CCcEEEEEcCCCeeeeecccC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCE
Q 002266 82 DHSVKLYKFPGGEFQTNITRF--TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEY 159 (945)
Q Consensus 82 Dg~V~iwdl~~g~~~~~l~~~--~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~ 159 (945)
+|+|..||..+|+.+....-. .....+. ..+++..+++++.++.|..||..+|+.+..... ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 688999999999887666431 1222211 333567788889999999999999998887765 23222211 224556
Q ss_pred EEEEeCCCcEEEEEccCCeeeeee-cccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCC
Q 002266 160 LASIDSIGTVIYWELQSGRELHNL-KRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQ 238 (945)
Q Consensus 160 Las~s~Dg~I~iwDl~t~~~i~~~-~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~ 238 (945)
+++++.++.|+.+|..+|+.+... ....+... ..........+..++++..++.|..+|.++|+.+..... ...
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~ 153 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEP 153 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT
T ss_pred cccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCC
Confidence 677778889999999999988874 32211111 111222233488888888899999999999999877755 221
Q ss_pred C----------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 239 P----------ICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 239 ~----------I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
. +..-....++ .++.++.++.+.-+|+.+++.+-... ...+..+ ....+..|++++.+|.|..||..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 1 1122222345 67777777754444999998664333 2333331 45677888888899999999998
Q ss_pred CCC
Q 002266 309 VPS 311 (945)
Q Consensus 309 ~~~ 311 (945)
++.
T Consensus 231 tG~ 233 (238)
T PF13360_consen 231 TGK 233 (238)
T ss_dssp TTE
T ss_pred CCC
Confidence 765
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.63 E-value=9.5e-06 Score=93.69 Aligned_cols=257 Identities=10% Similarity=0.047 Sum_probs=159.0
Q ss_pred CCEEEEEEcCCCeEEEEcCCCCccccccccccccceEE-EEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCE-
Q 002266 29 AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTA-LALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPI- 106 (945)
Q Consensus 29 g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~-la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V- 106 (945)
+..+++++ .++.+..+|..++..... .... ..+.+ ... .+..++.++.+|.|..+|..+|+...........+
T Consensus 120 ~~~v~v~~-~~g~l~ald~~tG~~~W~-~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGS-EKGQVYALNAEDGEVAWQ-TKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEc-CCCEEEEEECCCCCCccc-ccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 44556554 788999999888754332 2221 22221 111 23466677888999999999998776554321100
Q ss_pred ----EEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCC-------CEEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 002266 107 ----RVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKG-------PVTGLAFDP--NSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 107 ----~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~-------~V~~lafsp--dg~~Las~s~Dg~I~iwD 173 (945)
..... .+..+++++.++.+..+|..+|+.......... ....+..+| .+..+++++.+|.+..+|
T Consensus 195 ~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 195 LRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 01111 234577788899999999998876654431100 011111222 345677778899999999
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMA 253 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La 253 (945)
..+++.+...... . ...+. ..+..|++++.+|.+..+|..+++.+............+... .+.+|+
T Consensus 273 ~~tG~~~W~~~~~-----~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~ 339 (394)
T PRK11138 273 LRSGQIVWKREYG-----S----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV 339 (394)
T ss_pred CCCCCEEEeecCC-----C----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEE
Confidence 9999876654311 0 11112 246678888889999999999998776543211111222222 355778
Q ss_pred EEECCCeEEEEECCCCeeeeeccCC-CCeeE-EEEecCCCEEEEEEcCCeEEEEec
Q 002266 254 TSSLDRQILIWDVGKKLDIDRQKFD-DRICC-MAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 254 sgs~Dg~I~IWD~~~~~~i~~~~~~-~~V~~-la~spdg~~Las~s~DG~I~iWd~ 307 (945)
.++.+|.|.++|..+++.+...... ..+.+ ..+ .+..|++++.+|.|+.++.
T Consensus 340 v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 8899999999999999988775432 22322 222 2458999999999988764
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.60 E-value=1.4e-05 Score=92.38 Aligned_cols=271 Identities=11% Similarity=0.039 Sum_probs=162.4
Q ss_pred CCEEEEEEcCCCeEEEEcCCCCcccccccccccc---------ceE-EEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee
Q 002266 29 AHHLVTASSSETTISIHDPLLPSNLPKILRHHRD---------GVT-ALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 29 g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~---------~V~-~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~ 98 (945)
+..+++++ .++.|.-+|..++......-..... .+. .+.. ++..++.++.+|.+..+|..+|+....
T Consensus 69 ~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAAD-RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEEC-CCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 45566654 6788888888776533322111100 000 1111 345677788899999999999987765
Q ss_pred cccCCCCEEE-EEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEE-EEEEcc--CCCEEEEEeCCCcEEEEEc
Q 002266 99 ITRFTLPIRV-LAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT-GLAFDP--NSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 99 l~~~~~~V~~-l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~-~lafsp--dg~~Las~s~Dg~I~iwDl 174 (945)
.... ..+.+ ... .+..+++++.++.|..+|..+|+.+.........+. ...-+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 5432 22222 112 245677788899999999999998877653211100 000111 1345677788999999999
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSP--DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYM 252 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp--dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~L 252 (945)
.+|+.+.......+...........+.-+| .+..+++++.++.++.+|..+++.+...... ....+. ..+..|
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~--~~~~~v 297 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFA--VDGGRI 297 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcE--EECCEE
Confidence 999876654322111100000011111223 3556777778999999999999887665421 111122 245677
Q ss_pred EEEECCCeEEEEECCCCeeeeeccC-C-CCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCC
Q 002266 253 ATSSLDRQILIWDVGKKLDIDRQKF-D-DRICCMAWKPIGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 253 asgs~Dg~I~IWD~~~~~~i~~~~~-~-~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
+.++.+|.|..+|..+++.+-.... . ....+... .+..|++++.+|.|.+.|...++.
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 7888899999999999877654321 1 11222222 255788899999999999877664
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=6.8e-07 Score=91.63 Aligned_cols=235 Identities=13% Similarity=0.080 Sum_probs=137.3
Q ss_pred eEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee------------ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 002266 64 VTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT------------NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN 131 (945)
Q Consensus 64 V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~------------~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd 131 (945)
|+.+.++.+ ..|+++..++.+..+....+.+.. .+..+..+-.+-..+-.++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666543 456666666666555443333222 2223333333333344567899999999999998
Q ss_pred cCCCe-EEEEEecCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC-
Q 002266 132 TIDGS-IARVLKGHKGPVTGLAFDPNSEYLASIDS-----IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP- 204 (945)
Q Consensus 132 ~~~~~-~~~~l~~h~~~V~~lafspdg~~Las~s~-----Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp- 204 (945)
.+.-. .......-...-.+.++...++.+.++.. -+..++|+++..+... +.... ...+.+++-+|
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~------~~~~~-~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI------PSKKA-LDAVTALCSHPA 190 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc------ccccc-cccchhhhCCcc
Confidence 76511 11111111111122333344555554432 1234455544322211 11111 23388899999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeeee--------c
Q 002266 205 DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSP-NGKYMATSSLDRQILIWDVGKKLDIDR--------Q 275 (945)
Q Consensus 205 dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSp-dg~~Lasgs~Dg~I~IWD~~~~~~i~~--------~ 275 (945)
....+++|+.+|.+.+||.+.......+...|..+|..+.|+| ++..|.+++.||.+.-||..+.-+-.. .
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~W 270 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSW 270 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccccccc
Confidence 5667788889999999999988665555556999999999999 788999999999999999875221100 0
Q ss_pred cCCCCee--------------EE-EEecCCCEEEEEEcCCeEEEEe
Q 002266 276 KFDDRIC--------------CM-AWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 276 ~~~~~V~--------------~l-a~spdg~~Las~s~DG~I~iWd 306 (945)
-...++. ++ .|.--|..|++|+.-+.|++++
T Consensus 271 LsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 271 LSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 0011111 11 2333467888888888888875
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=6.9e-05 Score=81.05 Aligned_cols=235 Identities=15% Similarity=0.152 Sum_probs=159.2
Q ss_pred ceEEEEEec-CCCEEEEEEcCCc-EEEEEcCCCeeeeecccCCCCE--EEEEEecCCCEEEEEEC-----CCcEEEEEcC
Q 002266 63 GVTALALSP-NSTCLASGSIDHS-VKLYKFPGGEFQTNITRFTLPI--RVLAFNKSGSMLAAAGD-----DEGIKLINTI 133 (945)
Q Consensus 63 ~V~~la~sp-dg~~Lasgs~Dg~-V~iwdl~~g~~~~~l~~~~~~V--~~l~fspdg~~Lasgs~-----Dg~I~iwd~~ 133 (945)
....++.+| .+..++.+-.-|+ ..+||..+++....+......- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 5566666666654 6789999998777665433321 24689999999999743 4789999998
Q ss_pred -CCeEEEEEecCCCCEEEEEEccCCCEEEEEeC------------------CCcEEEEEccCCeeeeeecccCCCCCCCC
Q 002266 134 -DGSIARVLKGHKGPVTGLAFDPNSEYLASIDS------------------IGTVIYWELQSGRELHNLKRVAPDIGSDP 194 (945)
Q Consensus 134 -~~~~~~~l~~h~~~V~~lafspdg~~Las~s~------------------Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~ 194 (945)
+...+..+..|.-.-..+.+.|||+.|+++-. +..+.+.|..+|+.+....... ..+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~---~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP---DLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc---cccc
Confidence 56778888888877888999999988877631 2245556667776665543211 1344
Q ss_pred CCceEEEEcCCCCEEEEEeCCC-------eEEEEECCCCcEEEeecC----CCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 002266 195 SSMNVLSWSPDGETLAVPGLKN-------DVVMYDRDTAEKLFSLRG----DHVQPICFLSWSPNGKYMATSS-LDRQIL 262 (945)
Q Consensus 195 ~~i~~l~~spdg~~La~gs~dg-------~I~vwD~~t~~~~~~~~~----~h~~~I~~l~fSpdg~~Lasgs-~Dg~I~ 262 (945)
..+..+++.++|..++..-..| -|.+++....-....... .....+-+|+++++|.++++.+ ..+.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 5688899999998766654333 255555443211222111 1346899999999998876555 567899
Q ss_pred EEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEE
Q 002266 263 IWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYG 303 (945)
Q Consensus 263 IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~ 303 (945)
+||..++..+...... .++.++-.+++ ++..+..|.+.
T Consensus 243 ~~d~~tg~~~~~~~l~-D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP-DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred EEECCCCCEeeccccC-ceeeeeecCCc--eEEeCCCccEE
Confidence 9999999998876543 57888888777 44444455543
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.52 E-value=1.2e-06 Score=95.13 Aligned_cols=162 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccc--cccccceEEEEEecCCCEEEEEEcC---CcEEEEEcCCCe
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKIL--RHHRDGVTALALSPNSTCLASGSID---HSVKLYKFPGGE 94 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l--~~h~~~V~~la~spdg~~Lasgs~D---g~V~iwdl~~g~ 94 (945)
+..+..++.+++||++. .+....+++........+.+ ..-...-+++.|..+......+..- ..+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~-~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVAT-SSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEe-CCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455788888888876 45554455543322111111 1112333455555555555444433 445555555444
Q ss_pred eeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 95 FQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV-LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~-l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
...+.+|-..+++++|+||+++|+++..|..|+|-.......+.. +-||+..|..++.-++ ..|++++.|++|++||
T Consensus 144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 345567888999999999999999999999999987765544444 4579999999998764 5689999999999999
Q ss_pred ccCCeeeeeec
Q 002266 174 LQSGRELHNLK 184 (945)
Q Consensus 174 l~t~~~i~~~~ 184 (945)
+.+|+.++++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886654
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=2.3e-05 Score=95.46 Aligned_cols=275 Identities=15% Similarity=0.240 Sum_probs=158.3
Q ss_pred CCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 16 NAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
+...|.++.|..++..++++. ..|.|.+-|..+.. ......-..+|.+++|+||+..++..+..+++.+..- +-.+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~-~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVIT-ALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEe-cCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc
Confidence 446899999999999888886 78999999877652 3334445688999999999999999888887766542 2222
Q ss_pred eeecccC-----CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe----CC
Q 002266 96 QTNITRF-----TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASID----SI 166 (945)
Q Consensus 96 ~~~l~~~-----~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s----~D 166 (945)
+..-.-+ .+..-.+-|-...+.+ - +..|.....+............-.+.=++|.|--||+++|+.. .+
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf-r-gs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF-R-GSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee-e-cchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 2111000 0111122222211111 0 1111111111111110000001112235689999999998842 23
Q ss_pred -CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe---CCCeEEEEECCCCcE---EEeecCCCCCC
Q 002266 167 -GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG---LKNDVVMYDRDTAEK---LFSLRGDHVQP 239 (945)
Q Consensus 167 -g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs---~dg~I~vwD~~t~~~---~~~~~~~h~~~ 239 (945)
..|+|||-. |..-.. .. .....-.+++|-|.|..+++.. .++.|.+|.....+. ...++. ....
T Consensus 221 ~RkirV~drE-g~Lns~-se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~-de~~ 291 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNST-SE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL-DEKE 291 (1265)
T ss_pred ceeEEEeccc-chhhcc-cC------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc-cccc
Confidence 689999976 332211 11 1112235699999999998853 356799998764322 222222 2344
Q ss_pred eEEEEEcCCCCEEEE---EECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCC-EEEEEEcCCeEEEEe
Q 002266 240 ICFLSWSPNGKYMAT---SSLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGN-ALAVIDVMGKYGVWE 306 (945)
Q Consensus 240 I~~l~fSpdg~~Las---gs~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~-~Las~s~DG~I~iWd 306 (945)
|..++|+.++..||+ ......|++|-+.+...... ...+.... +.|+|... .|.+...+|.+.+++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEE
Confidence 999999999999988 44455699999887544333 22222222 77777432 444444566555544
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.45 E-value=6.1e-06 Score=86.40 Aligned_cols=246 Identities=17% Similarity=0.198 Sum_probs=159.6
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc----cccccccc------------cceEEEEEecCC--CEEEE
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNL----PKILRHHR------------DGVTALALSPNS--TCLAS 78 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~----~~~l~~h~------------~~V~~la~spdg--~~Las 78 (945)
...|+++.|...|.+|++|- ..|.|.+|.-.....+ ...+.+|. ..|..|.|..++ ..++.
T Consensus 26 ad~ItaVefd~tg~YlatGD-kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGD-KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecC-CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35699999999999999874 7899999974432211 12233443 458889998754 35566
Q ss_pred EEcCCcEEEEEcCCCee-------------------------------------e----e-e-cccCCCCEEEEEEecCC
Q 002266 79 GSIDHSVKLYKFPGGEF-------------------------------------Q----T-N-ITRFTLPIRVLAFNKSG 115 (945)
Q Consensus 79 gs~Dg~V~iwdl~~g~~-------------------------------------~----~-~-l~~~~~~V~~l~fspdg 115 (945)
.+.|.+|++|.+..... + . . ...|+..|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999998743200 0 0 0 02344557788898887
Q ss_pred CEEEEEECCCcEEEEEcCCCe---EEEEEecCC-----CCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCeeee----e
Q 002266 116 SMLAAAGDDEGIKLINTIDGS---IARVLKGHK-----GPVTGLAFDPN-SEYLASIDSIGTVIYWELQSGRELH----N 182 (945)
Q Consensus 116 ~~Lasgs~Dg~I~iwd~~~~~---~~~~l~~h~-----~~V~~lafspd-g~~Las~s~Dg~I~iwDl~t~~~i~----~ 182 (945)
..++++ +|-.|.+|++.-.. .+..++.|. .-|++..|+|. ...+..++..|.|++-|++.....- .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777665 67789999886432 233344443 45889999995 4566667788999999998542111 1
Q ss_pred ecccCCC-----CCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEeecCCC------------CCCe---E
Q 002266 183 LKRVAPD-----IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDH------------VQPI---C 241 (945)
Q Consensus 183 ~~~~~~~-----~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h------------~~~I---~ 241 (945)
+...... +....+.|..+.|+++|+++++-. -.+|++||.+..+ ++.+++- | ...| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeech-HHHHHHHHHhhhhccceeeeE
Confidence 1100000 011225577899999999998864 4589999998544 5555532 2 1223 3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEC
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~ 266 (945)
.+.||-+.+.+.+|+.....-||-+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 4678888888999988877777754
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.44 E-value=7.2e-07 Score=91.45 Aligned_cols=148 Identities=13% Similarity=0.186 Sum_probs=95.8
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE-----cCCcEEEEEcCCCeeeeecccC
Q 002266 28 QAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS-----IDHSVKLYKFPGGEFQTNITRF 102 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs-----~Dg~V~iwdl~~g~~~~~l~~~ 102 (945)
.+..+++++ .||.+.+.+..........+..-...-.+.++...+.++.++. .-+..++|++...+....-...
T Consensus 100 ~~t~V~~~~-~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 100 TDNRVCIGY-ADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred cCCceEecC-CCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence 455677765 9999999986542222222211111122333344455555432 1234566665433222111112
Q ss_pred CCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCe-EEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccC
Q 002266 103 TLPIRVLAFNK-SGSMLAAAGDDEGIKLINTIDGS-IARVLKGHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQS 176 (945)
Q Consensus 103 ~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~-~~~~l~~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t 176 (945)
...|.+++-+| ..+.+++|++||.+-+||.+... +...+..|+.+|..+-|+| ++..|++++.||.+..||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 23488888888 45677888899999999998864 3455678999999999999 677999999999999999764
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.42 E-value=4.3e-06 Score=98.44 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=137.4
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEE
Q 002266 72 NSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGL 151 (945)
Q Consensus 72 dg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~l 151 (945)
++..++.|+....+..+|+.+.+..+...-....|.-+. .+++.+.+|...|+|.+-|..+.+.++++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677777777788889988877666554444555554 467899999999999999999999999999999999876
Q ss_pred EEccCCCEEEEEeC---------CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEeCCCeEEEE
Q 002266 152 AFDPNSEYLASIDS---------IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPGLKNDVVMY 221 (945)
Q Consensus 152 afspdg~~Las~s~---------Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs~dg~I~vw 221 (945)
.. .|+.|++|+. |.-|+|||++..+.+..+..+. + ..-+.|+|. ...+++++..|...+.
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-------~-P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-------G-PQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-------C-chhhhhcccccceEEEEecccceeec
Confidence 55 5889999875 4568999999876655443221 1 134788884 5678888899999999
Q ss_pred ECCCCc----EEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002266 222 DRDTAE----KLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265 (945)
Q Consensus 222 D~~t~~----~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD 265 (945)
|..++. .+..+.. ....+..+++|++|..||.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 954432 1233322 445699999999999999999999999997
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.41 E-value=2.4e-06 Score=92.77 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=110.6
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCee-eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe---EEEEEC
Q 002266 148 VTGLAFDPNSEYLASIDSIGTVIYWELQSGRE-LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND---VVMYDR 223 (945)
Q Consensus 148 V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~-i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~---I~vwD~ 223 (945)
+..+..++.+++||++..+....++++..... ..-+... .-....+.+.+..+.....++..-|. +.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-----~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-----CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-----ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 44556778888888888887777777765433 1111100 11122344556555555555544444 445544
Q ss_pred CCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEEEEcCCe
Q 002266 224 DTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAVIDVMGK 301 (945)
Q Consensus 224 ~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las~s~DG~ 301 (945)
..+..... .+ |...++.|+|+||+++|+++..|..|+|-.+..-..+.. .+|...|..++.-++. .|++++.|++
T Consensus 140 ~~~~~~~~-lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~t 216 (390)
T KOG3914|consen 140 DSGRCEPI-LG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKT 216 (390)
T ss_pred cccCcchh-hh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCc
Confidence 44444333 33 899999999999999999999999999988877666665 5788899999988764 5899999999
Q ss_pred EEEEecCCCCCC
Q 002266 302 YGVWESVVPSSM 313 (945)
Q Consensus 302 I~iWd~~~~~~~ 313 (945)
|++||...++.+
T Consensus 217 lr~Wd~~sgk~L 228 (390)
T KOG3914|consen 217 LRLWDITSGKLL 228 (390)
T ss_pred EEEEecccCCcc
Confidence 999999888764
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.2e-05 Score=94.05 Aligned_cols=187 Identities=14% Similarity=0.174 Sum_probs=133.4
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
..++|+++ .+++++.+. .+|.|++++.... . .....|... .-+|.++++|+.||.|.|-.+.+.+...
T Consensus 40 D~is~~av--~~~~~~~Gt-H~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGT-HRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHh--hcceeeecc-ccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 44667777 467788876 8999999986432 2 444445443 5689999999999999999998887665
Q ss_pred ecccCCCCEEEEEEecC-----CCEEEEEECCCcEEEEEcC--CCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002266 98 NITRFTLPIRVLAFNKS-----GSMLAAAGDDEGIKLINTI--DGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspd-----g~~Lasgs~Dg~I~iwd~~--~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~ 170 (945)
.+. +..++.+++++|+ .+.+++||..| +.++.-. .......+....++|.++.|. |+++|-++.+| |+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 554 6779999999997 56899999888 7666432 111222456677999999997 78888887766 89
Q ss_pred EEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC
Q 002266 171 YWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD 224 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~ 224 (945)
|||+.+++.+..++........ ......+.|.++. .|++|- ..+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~-e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRP-ELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCc-ccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 9999999888777654322221 1223458888755 455553 4578887776
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.33 E-value=0.00024 Score=79.13 Aligned_cols=278 Identities=18% Similarity=0.136 Sum_probs=142.6
Q ss_pred EEECCCCCEEEEEEcCCCeEEEE--cCCCCccccccccccc-cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec
Q 002266 23 ILWDQQAHHLVTASSSETTISIH--DPLLPSNLPKILRHHR-DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI 99 (945)
Q Consensus 23 vafspdg~~L~t~g~~dg~V~IW--d~~~~~~~~~~l~~h~-~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l 99 (945)
=+|.++|+.|+.++..+|.-.+| |+.++ ....+..+. .......++++++.++.......|+..|+.+.+....+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~--~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATG--EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccC--EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 36899999999887666655555 55554 333444332 22334666788888876666678999999998765555
Q ss_pred ccCCCCEEEEEEe--cCCCEEEEEEC----------------------CCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc
Q 002266 100 TRFTLPIRVLAFN--KSGSMLAAAGD----------------------DEGIKLINTIDGSIARVLKGHKGPVTGLAFDP 155 (945)
Q Consensus 100 ~~~~~~V~~l~fs--pdg~~Lasgs~----------------------Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp 155 (945)
......+-...|. .++..++-.-. ...|...|+.+|+....+. ....+..+.|+|
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP 197 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSP 197 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEET
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCC
Confidence 5445555456664 35555443211 1347777888887655554 557888999999
Q ss_pred CCCEEEEEeCCC-----cEEEEEccCC-eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe-----CCCeEEEEECC
Q 002266 156 NSEYLASIDSIG-----TVIYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG-----LKNDVVMYDRD 224 (945)
Q Consensus 156 dg~~Las~s~Dg-----~I~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs-----~dg~I~vwD~~ 224 (945)
....+++=|..| .-+||-+++. .....+.... ....+..=-|.|||..|..-+ .+..|.-+|..
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-----~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-----EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-----CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 655444433333 2367766543 3333332211 123344456899998876632 24468888898
Q ss_pred CCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC----------------eEEEEECCCCeeeeeccCC---------C
Q 002266 225 TAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR----------------QILIWDVGKKLDIDRQKFD---------D 279 (945)
Q Consensus 225 t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg----------------~I~IWD~~~~~~i~~~~~~---------~ 279 (945)
+++....... .....+.-+++|++++-=+.|. .|+++++..+.......|. .
T Consensus 273 t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 273 TGERRRLMEM---PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR 349 (386)
T ss_dssp T--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred CCCceEEEeC---CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence 8865433221 2345566788999887644432 5677888877654332221 1
Q ss_pred --CeeEEEEecCCCEEE-EEEcCCeEEEEecCCCC
Q 002266 280 --RICCMAWKPIGNALA-VIDVMGKYGVWESVVPS 311 (945)
Q Consensus 280 --~V~~la~spdg~~La-s~s~DG~I~iWd~~~~~ 311 (945)
.=....|+|||+.|+ ..+..|...||-+.++.
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD 384 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence 235789999999655 46678888888766554
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.2e-05 Score=82.43 Aligned_cols=245 Identities=11% Similarity=0.085 Sum_probs=149.9
Q ss_pred ccccccccceEEEEEecCCC-EEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCC-CEEEEEECCCcEEEEEc
Q 002266 55 KILRHHRDGVTALALSPNST-CLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEGIKLINT 132 (945)
Q Consensus 55 ~~l~~h~~~V~~la~spdg~-~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~ 132 (945)
..+..|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+. ++|..|-..|.|.|||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 35667788899999999776 7888899999999999998888777766 789999998765 56777778999999999
Q ss_pred CCCeE-EEEEec--CCCCEEEEEEcc------CCCEEEEEeCCCcEEEEEccCC--eeeeeecccCCCCCCCCCCceEEE
Q 002266 133 IDGSI-ARVLKG--HKGPVTGLAFDP------NSEYLASIDSIGTVIYWELQSG--RELHNLKRVAPDIGSDPSSMNVLS 201 (945)
Q Consensus 133 ~~~~~-~~~l~~--h~~~V~~lafsp------dg~~Las~s~Dg~I~iwDl~t~--~~i~~~~~~~~~~~~~~~~i~~l~ 201 (945)
+..+- +..+.+ ...+|..++.-+ .|.+|+.+.. .+..|.+.-. .....+. ...++...+++
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vle------le~pG~cismq 337 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLE------LEPPGICISMQ 337 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccc------cCCCcceeeee
Confidence 86542 222221 234555544432 3444444443 2455654322 1111111 01234555666
Q ss_pred EcCCCCEEEEEeCCC-------eEE-EEECCCCcEEEeecCCC-CCCeE-----EEEE-cCCCCEEE-EEECCCeEEEEE
Q 002266 202 WSPDGETLAVPGLKN-------DVV-MYDRDTAEKLFSLRGDH-VQPIC-----FLSW-SPNGKYMA-TSSLDRQILIWD 265 (945)
Q Consensus 202 ~spdg~~La~gs~dg-------~I~-vwD~~t~~~~~~~~~~h-~~~I~-----~l~f-Spdg~~La-sgs~Dg~I~IWD 265 (945)
.++..+.+++....+ .|- -.|-.+|.++......+ .+.-+ ...+ .++..+|+ ++...+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 777556665544321 111 12333455544433222 11111 1112 23445554 455568899999
Q ss_pred CCCCeeeeeccCCCCeeEEEEec-CCC-EEEEEEcCCeEEEEecCC
Q 002266 266 VGKKLDIDRQKFDDRICCMAWKP-IGN-ALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 266 ~~~~~~i~~~~~~~~V~~la~sp-dg~-~Las~s~DG~I~iWd~~~ 309 (945)
..+.+.++......+|..++... ++. +|++- .|..++||....
T Consensus 418 ~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 418 PHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred cchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 99999999998889999988765 344 55554 455688876543
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=0.00047 Score=71.30 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=95.7
Q ss_pred ECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCC
Q 002266 25 WDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTL 104 (945)
Q Consensus 25 fspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~ 104 (945)
.-+|.+.++..|+..+.+.--|..++......+-+ ..|.+-+.- -|++++.|+..|.+++.++.+|.....+.....
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 34555666666668888888888887654444433 333333332 467899999999999999999976666553332
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 105 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
--......+++..+..|+.|++.+..|.++...+...+...+...+-+..|-...|+.+...|.|.--
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 22234456789999999999999999999988887766554444455556623333333444444433
No 315
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=0.00043 Score=75.86 Aligned_cols=265 Identities=12% Similarity=0.147 Sum_probs=163.0
Q ss_pred CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE----------cCCcEEEEEcCCCeeeeecccCC------
Q 002266 40 TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS----------IDHSVKLYKFPGGEFQTNITRFT------ 103 (945)
Q Consensus 40 g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs----------~Dg~V~iwdl~~g~~~~~l~~~~------ 103 (945)
+.+.|+|..+++. .-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+......+.-..
T Consensus 17 ~rv~viD~d~~k~-lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKL-LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEE-EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcE-EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4788888777643 222222 2233466799999988764 23469999999877655432111
Q ss_pred -CCEEEEEEecCCCEEEEEEC--CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc-CCee
Q 002266 104 -LPIRVLAFNKSGSMLAAAGD--DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ-SGRE 179 (945)
Q Consensus 104 -~~V~~l~fspdg~~Lasgs~--Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~-t~~~ 179 (945)
.....++++.+|+++++..- ...|.|.|+..++.+..+... +. . +.|-....-+.+.|.||.+.-..+. .|+.
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC-~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-GC-W-LIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-SE-E-EEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-CE-E-EEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 12234688899999888654 456999999999988777632 22 2 2221122457788899999999998 4554
Q ss_pred eeeecccCCCCCCCCC-CceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE----eecC-------CCCCCeEEEEEcC
Q 002266 180 LHNLKRVAPDIGSDPS-SMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLF----SLRG-------DHVQPICFLSWSP 247 (945)
Q Consensus 180 i~~~~~~~~~~~~~~~-~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~----~~~~-------~h~~~I~~l~fSp 247 (945)
...... .+..... .+..-++...+..++..+..|.|+-.|+....... .+.. -..+.-.-+++++
T Consensus 171 ~~~~t~---~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 171 AQKSTK---VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEE---ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred eEeecc---ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 432221 1111122 23345566666666667889999999987654321 1111 0123344577776
Q ss_pred CCCEEEEEEC---CC-------eEEEEECCCCeeeeeccCCCCeeEEEEecCCC-EEEEEE-cCCeEEEEecCCCCCC
Q 002266 248 NGKYMATSSL---DR-------QILIWDVGKKLDIDRQKFDDRICCMAWKPIGN-ALAVID-VMGKYGVWESVVPSSM 313 (945)
Q Consensus 248 dg~~Lasgs~---Dg-------~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~-~Las~s-~DG~I~iWd~~~~~~~ 313 (945)
....|+.--. +| .|.++|+.+++.+.++.....+.+|+.+.+.+ +|++.+ .++.|.+||..+++.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 5444443221 11 58889999999999988878899999999876 665544 5799999999887643
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00015 Score=85.64 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=137.8
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccc-eEEEEEecCCCEEEEEEcCC-----cEEEEEcCC
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDG-VTALALSPNSTCLASGSIDH-----SVKLYKFPG 92 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~-V~~la~spdg~~Lasgs~Dg-----~V~iwdl~~ 92 (945)
.|+| |++.+..++.+. .+|.|.+.+-. -....-+..+... |..+-...+..+|++.+.|+ .|+||++..
T Consensus 27 ~isc--~~s~~~~vvigt-~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGT-ADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCCCceEEEee-ccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 6776 888888888886 89998888732 2333556666666 55554444447888877764 489999863
Q ss_pred C------eeee--eccc-----CCCCEEEEEEecCCCEEEEEECCCcEEEEEcC----CCeEEEEEecCCCCEEEEEEcc
Q 002266 93 G------EFQT--NITR-----FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI----DGSIARVLKGHKGPVTGLAFDP 155 (945)
Q Consensus 93 g------~~~~--~l~~-----~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~----~~~~~~~l~~h~~~V~~lafsp 155 (945)
- ++.. .+.. .+.++.+++.+.+-+.+|+|-.+|.|..+.-. .+...........+|+.+++..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2 2221 1111 25678999999999999999999999988432 2233333344568999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC
Q 002266 156 NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD 235 (945)
Q Consensus 156 dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~ 235 (945)
++..++.+..-..|.+|.+....+.... ...++..++|.++++....+++++ ...+.+|+.....+...+..+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~------ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKV------LDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceee------eccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCC
Confidence 8887333333457999998743311111 124456778888887555466554 668999999877777777632
Q ss_pred CC
Q 002266 236 HV 237 (945)
Q Consensus 236 h~ 237 (945)
|.
T Consensus 255 ~k 256 (933)
T KOG2114|consen 255 EK 256 (933)
T ss_pred Ce
Confidence 43
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.28 E-value=0.00015 Score=85.02 Aligned_cols=254 Identities=11% Similarity=0.049 Sum_probs=146.5
Q ss_pred CCCCEEEEEEcCCCeEEEEcCCCCcc-----cccccccc---------ccceE-----EEEEecCCCEEEE-EEcCCcEE
Q 002266 27 QQAHHLVTASSSETTISIHDPLLPSN-----LPKILRHH---------RDGVT-----ALALSPNSTCLAS-GSIDHSVK 86 (945)
Q Consensus 27 pdg~~L~t~g~~dg~V~IWd~~~~~~-----~~~~l~~h---------~~~V~-----~la~spdg~~Las-gs~Dg~V~ 86 (945)
.||++|++-.-.+.+|..-++..-.. ++.....| ++-|. .+-+.|||+.+.. .-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 48899988754566666655543221 11111111 11122 1234456654432 22346677
Q ss_pred EEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECC----CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEE
Q 002266 87 LYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD----EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 87 iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D----g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las 162 (945)
+.|..+.+....+.- ......+.++++|+++++.+.+ ..+...+..+...+..+... .+ -++.++|++...
T Consensus 219 vID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V 293 (635)
T PRK02888 219 AVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI 293 (635)
T ss_pred EEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE
Confidence 777777665555443 2344678899999999888632 23333333222211111100 00 133457877665
Q ss_pred EeCCCcEEEEEccC-----CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCCCcE--------
Q 002266 163 IDSIGTVIYWELQS-----GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDTAEK-------- 228 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t-----~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t~~~-------- 228 (945)
+ ++.|.+.|.++ ...+..+.. ......+.++|||+++++++. +++|.|+|+.+.+.
T Consensus 294 ~--gn~V~VID~~t~~~~~~~v~~yIPV--------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 294 G--GSKVPVVDGRKAANAGSALTRYVPV--------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred C--CCEEEEEECCccccCCcceEEEEEC--------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 3 57899999987 344444432 123456999999999888665 88999999987553
Q ss_pred ----EEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeeeeeccCCCCeeEEE------Eec
Q 002266 229 ----LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK----------KLDIDRQKFDDRICCMA------WKP 288 (945)
Q Consensus 229 ----~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~----------~~~i~~~~~~~~V~~la------~sp 288 (945)
+.+..- .......+|.++|....|-..|..|..|++.+ ..++........+-.+. -.|
T Consensus 364 ~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~ 441 (635)
T PRK02888 364 RDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEA 441 (635)
T ss_pred cceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCC
Confidence 222221 23344578999999888888999999999876 23444333222222222 367
Q ss_pred CCCEEEEEE
Q 002266 289 IGNALAVID 297 (945)
Q Consensus 289 dg~~Las~s 297 (945)
+|++|++..
T Consensus 442 dgk~l~~~n 450 (635)
T PRK02888 442 DGKWLVSLN 450 (635)
T ss_pred CCCEEEEcc
Confidence 888888764
No 318
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.00041 Score=82.40 Aligned_cols=273 Identities=9% Similarity=0.058 Sum_probs=159.5
Q ss_pred CEEEEEEcCCCeEEEEcCCCCccccccccccc-----cceE--EEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccC
Q 002266 30 HHLVTASSSETTISIHDPLLPSNLPKILRHHR-----DGVT--ALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRF 102 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~-----~~V~--~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~ 102 (945)
..++++. .++.|.-.|..++......-.... ..+. .++.. ++..++.++.+|.|..+|..+|+.+-.....
T Consensus 62 g~vy~~~-~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 62 GDMYFTT-SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CEEEEeC-CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 3455554 678888888877754332211111 0110 11111 2257778888999999999999887665432
Q ss_pred CCC-----EE-EEEEecCCCEEEEEE---------CCCcEEEEEcCCCeEEEEEecCCC--------------------C
Q 002266 103 TLP-----IR-VLAFNKSGSMLAAAG---------DDEGIKLINTIDGSIARVLKGHKG--------------------P 147 (945)
Q Consensus 103 ~~~-----V~-~l~fspdg~~Lasgs---------~Dg~I~iwd~~~~~~~~~l~~h~~--------------------~ 147 (945)
... +. ...+. + ..+++++ .++.|..+|..+|+.+..+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 210 11 11221 2 4455554 357889999999988776653211 0
Q ss_pred E-EEEEEccCCCEEEEEeCCC------------------cEEEEEccCCeeeeeecccCCCC---CCCCCCceEEEE-cC
Q 002266 148 V-TGLAFDPNSEYLASIDSIG------------------TVIYWELQSGRELHNLKRVAPDI---GSDPSSMNVLSW-SP 204 (945)
Q Consensus 148 V-~~lafspdg~~Las~s~Dg------------------~I~iwDl~t~~~i~~~~~~~~~~---~~~~~~i~~l~~-sp 204 (945)
| ...++++.+..++.++.++ .|.-+|..+++....+....... .....++ .... .-
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~-~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS-LADIKPK 296 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe-EEecccc
Confidence 1 1345555667788787665 69999999999887765322111 0111111 0111 12
Q ss_pred CCC---EEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEE------------------ECCCeEEE
Q 002266 205 DGE---TLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS------------------SLDRQILI 263 (945)
Q Consensus 205 dg~---~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasg------------------s~Dg~I~I 263 (945)
+|. .+++++.+|.++.+|..+++.+...... ...++.+| ..++.+ ..+|.|.-
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A 370 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA 370 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEE
Confidence 343 6788888999999999999988776421 11133344 222221 23577888
Q ss_pred EECCCCeeeeeccCC---------CCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 264 WDVGKKLDIDRQKFD---------DRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 264 WD~~~~~~i~~~~~~---------~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
.|+.+++.+-..... .+...-.....+..|++++.||.|+.+|..+++.+
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 888888877664433 11111111224568889999999999998877754
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.23 E-value=0.0006 Score=77.52 Aligned_cols=263 Identities=14% Similarity=0.115 Sum_probs=149.0
Q ss_pred CCCCCEEEEEE--------cCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 26 DQQAHHLVTAS--------SSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 26 spdg~~L~t~g--------~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
|||+++++... +..+.+.|||+.++.. ..+......+....|+|+|+.++... ++.|.+++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~--~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI--TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE--EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce--EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 68999988843 1346788999887532 22222256788999999999999865 5789999987775433
Q ss_pred ecccC-----------------CCCEEEEEEecCCCEEEEEECC-Cc---------------------------------
Q 002266 98 NITRF-----------------TLPIRVLAFNKSGSMLAAAGDD-EG--------------------------------- 126 (945)
Q Consensus 98 ~l~~~-----------------~~~V~~l~fspdg~~Lasgs~D-g~--------------------------------- 126 (945)
.-... -..-..+-|||||++||....| ..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 22111 1123468899999999886432 11
Q ss_pred --EEEEEcCCCeEEE-E-E---ecCCCCEEEEEEccCCCEEEEE--eCCC---cEEEEEccCCeeeeeecccCCCCCCCC
Q 002266 127 --IKLINTIDGSIAR-V-L---KGHKGPVTGLAFDPNSEYLASI--DSIG---TVIYWELQSGRELHNLKRVAPDIGSDP 194 (945)
Q Consensus 127 --I~iwd~~~~~~~~-~-l---~~h~~~V~~lafspdg~~Las~--s~Dg---~I~iwDl~t~~~i~~~~~~~~~~~~~~ 194 (945)
+.|+|+.+++... . . ......+..+.|.+++..|+.. ..+. .+.++|..++............- -
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W---v 234 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW---V 234 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS---S
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc---e
Confidence 3344554443211 1 1 1233457889999998844433 3322 46777887764433332211111 1
Q ss_pred CCceEEEEc-CCCCE-EEEEeCCC--eEEEEECCCCcEEEeecCCCCCCeEE-EEEcCCCCEEE-EEEC----CCeEEEE
Q 002266 195 SSMNVLSWS-PDGET-LAVPGLKN--DVVMYDRDTAEKLFSLRGDHVQPICF-LSWSPNGKYMA-TSSL----DRQILIW 264 (945)
Q Consensus 195 ~~i~~l~~s-pdg~~-La~gs~dg--~I~vwD~~t~~~~~~~~~~h~~~I~~-l~fSpdg~~La-sgs~----Dg~I~IW 264 (945)
.....+.|. +++.. |.....+| .|++++...+... .+.. ..-.|.. +.|+++++.|+ ++.. ...|+..
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 122345554 65554 44444566 4667777766543 4443 4456644 67888877655 4443 2367777
Q ss_pred ECC-CCeeeeeccCCCCeeEEEEecCCCEEEEE
Q 002266 265 DVG-KKLDIDRQKFDDRICCMAWKPIGNALAVI 296 (945)
Q Consensus 265 D~~-~~~~i~~~~~~~~V~~la~spdg~~Las~ 296 (945)
++. .+...........-..+.|+|++++++..
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 777 55554443222222599999999977654
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.3e-05 Score=91.31 Aligned_cols=247 Identities=18% Similarity=0.216 Sum_probs=152.1
Q ss_pred EEEEEecCCCEEEEEEc----CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 002266 65 TALALSPNSTCLASGSI----DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140 (945)
Q Consensus 65 ~~la~spdg~~Lasgs~----Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 140 (945)
+-.+|+|...+|++++. .|.|.||- .+|++..... .+-.+++++|+|..-.|+.|-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 45678998888888763 58899984 6777544433 234567799999988899998899999999988877777
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeee----------------eecccCC----------CCCCCC
Q 002266 141 LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELH----------------NLKRVAP----------DIGSDP 194 (945)
Q Consensus 141 l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~----------------~~~~~~~----------~~~~~~ 194 (945)
...|..+|..+.|+++|..|+++..-|.|.+|.......+. .+....+ ...++.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 77899999999999999999999999999999875211111 0000000 000111
Q ss_pred CCce------------EE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCe
Q 002266 195 SSMN------------VL--SWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQ 260 (945)
Q Consensus 195 ~~i~------------~l--~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~ 260 (945)
..+- +. .-.|+|..+++++.+|+|+-.|-.. +........ +. ..+-|.+...-++....+-+
T Consensus 177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d--S~-vQmLf~~~~eai~~i~e~lr 252 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD--SE-VQMLFMGYCEAISIIIEFLR 252 (1416)
T ss_pred hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEEcc--ch-HHHHHhcccceEEEEeeece
Confidence 1110 00 1235778888888999998888543 222222110 00 11112221111111111111
Q ss_pred EEEEEC-----------------------------CCCeee----eeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 261 ILIWDV-----------------------------GKKLDI----DRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 261 I~IWD~-----------------------------~~~~~i----~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
+.++-+ ..|.+. ........++|++++..+..|..|...|++.+|.-
T Consensus 253 ~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 253 DCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred eeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence 111110 001111 11223567999999999999999999999999976
Q ss_pred CCCCCCCCCC
Q 002266 308 VVPSSMKSPT 317 (945)
Q Consensus 308 ~~~~~~~~~~ 317 (945)
+-......|+
T Consensus 333 v~~~f~g~p~ 342 (1416)
T KOG3617|consen 333 VNKGFQGDPT 342 (1416)
T ss_pred cCccccCCCC
Confidence 6444455554
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=3.4e-06 Score=89.72 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=113.0
Q ss_pred CCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC----eeeeecccCCCCEEEEEEec
Q 002266 38 SETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG----EFQTNITRFTLPIRVLAFNK 113 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g----~~~~~l~~~~~~V~~l~fsp 113 (945)
.+..|-+-++.++. .+.+. ..+.|.++.|...+.++..|+.+|.|..+|++.+ ........|...|+++....
T Consensus 232 ~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 232 LSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ 308 (425)
T ss_pred ccceeEEEEeeccc--ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence 57788888888763 33333 5678999999998899999999999999999764 11222334788899988776
Q ss_pred -CCCEEEEEECCCcEEEEEcCCCeE---EEEEecCCCCEEEEE--EccCCCEEEEEeCCCcEEEEEccCCeeeeeecc
Q 002266 114 -SGSMLAAAGDDEGIKLINTIDGSI---ARVLKGHKGPVTGLA--FDPNSEYLASIDSIGTVIYWELQSGRELHNLKR 185 (945)
Q Consensus 114 -dg~~Lasgs~Dg~I~iwd~~~~~~---~~~l~~h~~~V~~la--fspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~ 185 (945)
++.+|++.+-+|+|++||.+--++ +..+.+|-..-.-+- .++....+++++.|-..+||.++.+..+.+++.
T Consensus 309 ~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 309 FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 788999999999999999987655 788888855433322 345566888899999999999999998888764
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.21 E-value=0.00094 Score=73.23 Aligned_cols=251 Identities=14% Similarity=0.125 Sum_probs=149.7
Q ss_pred EEEECCCCCEEEEEE---------cCCCeEEEEcCCCCccccccccc--c----ccceEEEEEecCCCEEEEEEcC--Cc
Q 002266 22 SILWDQQAHHLVTAS---------SSETTISIHDPLLPSNLPKILRH--H----RDGVTALALSPNSTCLASGSID--HS 84 (945)
Q Consensus 22 svafspdg~~L~t~g---------~~dg~V~IWd~~~~~~~~~~l~~--h----~~~V~~la~spdg~~Lasgs~D--g~ 84 (945)
.+..+|+|+.++++. ...-.|.+||..+-.....+... | ......++++.||+++++.... ..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 356899999998763 12347889998765321111111 0 1122346788999999886543 57
Q ss_pred EEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC-CCeEEEEEe----cCCCCE-EEEEEccCCC
Q 002266 85 VKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI-DGSIARVLK----GHKGPV-TGLAFDPNSE 158 (945)
Q Consensus 85 V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~-~~~~~~~l~----~h~~~V-~~lafspdg~ 158 (945)
|.|.|+..++.+..+.. .+...-.-+ ....+.+-|.||.+.-+.+. .|+...... ....++ ..-++...+.
T Consensus 120 VtVVDl~~~kvv~ei~~-PGC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT-PGCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEG-TSEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecC-CCEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 99999999988776652 222211112 22457788899999988887 455432221 112222 2334455555
Q ss_pred EEEEEeCCCcEEEEEccCCeeee--eecccC---CCCCCCCCCceEEEEcCCCCEEEEEeC---CC-------eEEEEEC
Q 002266 159 YLASIDSIGTVIYWELQSGRELH--NLKRVA---PDIGSDPSSMNVLSWSPDGETLAVPGL---KN-------DVVMYDR 223 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~--~~~~~~---~~~~~~~~~i~~l~~spdg~~La~gs~---dg-------~I~vwD~ 223 (945)
.++..+.+|.|+--|+....... .+.... ....-.++....+++++..+.|++.-. ++ .|.+||+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 66667889999999987654322 221110 001112344556888886655555322 11 4899999
Q ss_pred CCCcEEEeecCCCCCCeEEEEEcCCCC-EEEEE-ECCCeEEEEECCCCeeeeeccC
Q 002266 224 DTAEKLFSLRGDHVQPICFLSWSPNGK-YMATS-SLDRQILIWDVGKKLDIDRQKF 277 (945)
Q Consensus 224 ~t~~~~~~~~~~h~~~I~~l~fSpdg~-~Lasg-s~Dg~I~IWD~~~~~~i~~~~~ 277 (945)
.+.+.+..+.. ..++.+|+.+.+.+ +|++. ..++.|.|||..+++.+.....
T Consensus 277 ~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 277 KTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99999988874 34688999998766 55554 4579999999999999888654
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.20 E-value=0.00011 Score=89.78 Aligned_cols=234 Identities=16% Similarity=0.186 Sum_probs=142.1
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 140 (945)
.+.|.++.|..++.-++.+...|.|.+.|..+.. ..........|.+++|+||+.+++..+..+++.+-.- +..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 3689999999999999999999999999877655 3344445778999999999999999998887766432 2222211
Q ss_pred Eec-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEE---
Q 002266 141 LKG-----HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP--- 212 (945)
Q Consensus 141 l~~-----h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g--- 212 (945)
..- ..+....+-|-...+.+= |+ .|.....+. +...+. .... .....-..++|--||+++++.
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfr-gs-~gr~~~~~~-----~~~ek~-~~~~-~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFR-GS-EGRQAARQK-----IEKEKA-LEQI-EQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cccccccccccccceecccccceeee-cc-hhhhccccc-----cccccc-ccch-hhccCCceEEEccCCcEEEEEEEe
Confidence 110 111222233322211111 11 111111110 000000 0000 011223569999999999983
Q ss_pred --eCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCC---CeeeeeccCC-CCeeE
Q 002266 213 --GLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSS---LDRQILIWDVGK---KLDIDRQKFD-DRICC 283 (945)
Q Consensus 213 --s~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs---~Dg~I~IWD~~~---~~~i~~~~~~-~~V~~ 283 (945)
.....|+|||.. +.. ........+.-.+++|-|.|..+++.. .|+.|.+|.-.. +......... ..|..
T Consensus 217 ~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 323789999998 432 222222344557799999999999864 466799998543 2222222222 34999
Q ss_pred EEEecCCCEEEE---EEcCCeEEEEec
Q 002266 284 MAWKPIGNALAV---IDVMGKYGVWES 307 (945)
Q Consensus 284 la~spdg~~Las---~s~DG~I~iWd~ 307 (945)
++|+.++..||+ ......|++|-.
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEe
Confidence 999999999888 444455999975
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=5.5e-06 Score=88.12 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=114.5
Q ss_pred EEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-----eEEEEEecCCCCEEEE
Q 002266 77 ASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG-----SIARVLKGHKGPVTGL 151 (945)
Q Consensus 77 asgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l 151 (945)
++.+.+..|-+-++.+|-.. .+. ....|.++.|...++++..|..+|.|..+|++.+ .+...+ -|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 44455667888888877533 233 5678899999988999999999999999999864 234444 488999999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEEccCCee---eeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 002266 152 AFDP-NSEYLASIDSIGTVIYWELQSGRE---LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE 227 (945)
Q Consensus 152 afsp-dg~~Las~s~Dg~I~iwDl~t~~~---i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~ 227 (945)
..-. ++.+|.+++.+|+|.+||++.-+. +.+..++... ....-+-..+....+++++.|...+||.++.+.
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~-----~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL-----SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-----ccccccccccccceEEEccCeeEEEEEecccCc
Confidence 8777 788999999999999999987666 6666554321 112224456666778888999999999999999
Q ss_pred EEEeecC
Q 002266 228 KLFSLRG 234 (945)
Q Consensus 228 ~~~~~~~ 234 (945)
.+.+++-
T Consensus 380 Ll~tipf 386 (425)
T KOG2695|consen 380 LLCTIPF 386 (425)
T ss_pred eeeccCC
Confidence 9888764
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.3e-05 Score=86.09 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=166.7
Q ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEEcCC---CeeeeecccCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCC
Q 002266 60 HRDGVTALALSPNSTCLASGSIDHSVKLYKFPG---GEFQTNITRFTLPIRVLAFNKSGSMLAAAGD-DEGIKLINTIDG 135 (945)
Q Consensus 60 h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~---g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~ 135 (945)
|.+.|+.+... -.+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66777766544 357999999999999997432 2344556667788999999999999999888 999999999875
Q ss_pred eEEEEEe--cCCCCEEEEEEccCCC--EEE-EEeCCCcEEEEEccCCe-eeeeecccCCCCCCCCCCceEEEEcCCCCEE
Q 002266 136 SIARVLK--GHKGPVTGLAFDPNSE--YLA-SIDSIGTVIYWELQSGR-ELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209 (945)
Q Consensus 136 ~~~~~l~--~h~~~V~~lafspdg~--~La-s~s~Dg~I~iwDl~t~~-~i~~~~~~~~~~~~~~~~i~~l~~spdg~~L 209 (945)
..+..++ ...+.+..+ .++... .|+ +.-.+|.+.|+|-.... ....+. ..|..+|.++.+.+-+..+
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk------klH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK------KLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec------ccccCceEEEEeeccccce
Confidence 5432222 222332222 222211 333 33457889999976553 222222 2466889999999999999
Q ss_pred EEEeCCCeEEEEECCC------CcEEEeecC--------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002266 210 AVPGLKNDVVMYDRDT------AEKLFSLRG--------DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ 275 (945)
Q Consensus 210 a~gs~dg~I~vwD~~t------~~~~~~~~~--------~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~ 275 (945)
++....|.|.-|.... .+....++. ......+++.|+|+|..+.+-+.|..|+++++.++++++.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9988899999998762 111111110 13456788999999999999999999999999988664321
Q ss_pred ---------------------------------cCC-CCeeEEEEecCCCEEEEEEcCCeEEEEecCCCC
Q 002266 276 ---------------------------------KFD-DRICCMAWKPIGNALAVIDVMGKYGVWESVVPS 311 (945)
Q Consensus 276 ---------------------------------~~~-~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~ 311 (945)
++. ..-+.+.|...|++|+.++-=| |++.++.+..
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 111 2345778888999999887766 6666655443
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=4.3e-05 Score=89.55 Aligned_cols=178 Identities=16% Similarity=0.239 Sum_probs=129.8
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeec
Q 002266 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLK 184 (945)
Q Consensus 105 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~ 184 (945)
.++|++++ ++.|+.|+.+|.|++++... .. .+...|... +.+|+++++|+.||+|.|..+-+.+...++.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 45666664 57899999999999998743 33 344445443 6689999999999999999998887766654
Q ss_pred ccCCCCCCCCCCceEEEEcCC-----CCEEEEEeCCCeEEEEECCC---CcEEEeecCCCCCCeEEEEEcCCCCEEEEEE
Q 002266 185 RVAPDIGSDPSSMNVLSWSPD-----GETLAVPGLKNDVVMYDRDT---AEKLFSLRGDHVQPICFLSWSPNGKYMATSS 256 (945)
Q Consensus 185 ~~~~~~~~~~~~i~~l~~spd-----g~~La~gs~dg~I~vwD~~t---~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs 256 (945)
. ..++.+++++|+ .+.+++|+..| +.++..+= ...+ .+ ....++|.++.| .|.++|-++
T Consensus 111 f--------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l-~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 111 F--------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VL-SEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred c--------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-ee-ecCccceEEEEe--cCcEEEEec
Confidence 3 256788999997 56889999888 88876542 2222 22 235789999999 688999998
Q ss_pred CCCeEEEEECCCCeeeeeccC-------CCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 257 LDRQILIWDVGKKLDIDRQKF-------DDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 257 ~Dg~I~IWD~~~~~~i~~~~~-------~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
.+| |+|||+.++..+..+.. ......+.|.++.+. + .|...+|.|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-V-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-V-IGWGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-E-EecCCeEEEEEEe
Confidence 777 99999999888776432 223567889887643 3 3445568888776
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=9.8e-05 Score=86.35 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=84.1
Q ss_pred EECCCCCEEEEEE---cCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecc
Q 002266 24 LWDQQAHHLVTAS---SSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNIT 100 (945)
Q Consensus 24 afspdg~~L~t~g---~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~ 100 (945)
.|+|...++++++ ...|.|.||-- ++. +..--...-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-....
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfad-tGE--Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFAD-TGE--PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEec-CCC--CCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 4999999998875 25688988852 322 22111112235679999998888888888999999988777666677
Q ss_pred cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 002266 101 RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTI 133 (945)
Q Consensus 101 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~ 133 (945)
.|+.+|..+.||++|..++++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 899999999999999999999999999999765
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.0001 Score=80.15 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=141.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCC-CEEEEEEcCCcEEEEEcCCC
Q 002266 15 GNAASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS-TCLASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 15 gh~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl~~g 93 (945)
+|...|..++|||..+-|+..++.+..|.|.|+.+. .....+..| ..+++++|.-|. ++|+.|..+|.|.|||++..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 355889999999999866555568999999999887 445555565 789999999865 57777788999999999754
Q ss_pred eee-eeccc--CCCCEEEEEEe------cCCCEEEEEECCCcEEEEEcCC--CeEEEEEe-cCCCCEEEEEEccCCCEEE
Q 002266 94 EFQ-TNITR--FTLPIRVLAFN------KSGSMLAAAGDDEGIKLINTID--GSIARVLK-GHKGPVTGLAFDPNSEYLA 161 (945)
Q Consensus 94 ~~~-~~l~~--~~~~V~~l~fs------pdg~~Lasgs~Dg~I~iwd~~~--~~~~~~l~-~h~~~V~~lafspdg~~La 161 (945)
+-. ..+.. ...+|..++.- +.|.+++....+ +..|.+.- +....++. +..+...++++++-.+.++
T Consensus 269 ~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 269 EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 321 11111 23345444433 234445544443 34454432 22222222 2346677777777555554
Q ss_pred EEeCC-C------cEEE-EEccCCeeeeeecccCCCCCCCC-CCceEEEEcCCCCEEEE-EeCCCeEEEEECCCCcEEEe
Q 002266 162 SIDSI-G------TVIY-WELQSGRELHNLKRVAPDIGSDP-SSMNVLSWSPDGETLAV-PGLKNDVVMYDRDTAEKLFS 231 (945)
Q Consensus 162 s~s~D-g------~I~i-wDl~t~~~i~~~~~~~~~~~~~~-~~i~~l~~spdg~~La~-gs~dg~I~vwD~~t~~~~~~ 231 (945)
..... . .|.. -|...|..+.............. ..-..+.-.++.++|+. +...+.+.+||..+++.+.+
T Consensus 347 ~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 347 LTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQT 426 (463)
T ss_pred EEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeee
Confidence 44322 1 1111 12223333222111100000000 00011222335555544 44567899999999999998
Q ss_pred ecCCCCCCeEEEEEcC-C-CCEEEEEECCCeEEEEECC
Q 002266 232 LRGDHVQPICFLSWSP-N-GKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 232 ~~~~h~~~I~~l~fSp-d-g~~Lasgs~Dg~I~IWD~~ 267 (945)
+.- ..+|.+++... + +.||++-+ |..++||..+
T Consensus 427 l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 427 LAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ccc--CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 874 47888887554 3 45777666 5678888654
No 329
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0033 Score=72.17 Aligned_cols=264 Identities=14% Similarity=0.135 Sum_probs=173.8
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEE-EEEcCCcEEEEEcCCCeeeee
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLA-SGSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~La-sgs~Dg~V~iwdl~~g~~~~~ 98 (945)
...+.+.+++..+.+.......+.+-+.. ..............-..++.++.+..++ +...++.|.+.|..+......
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 44567888887666554333345555543 2111111111113345778888887444 444568999999777666555
Q ss_pred cccCCCCEEEEEEecCCCEEEEEEC---CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc
Q 002266 99 ITRFTLPIRVLAFNKSGSMLAAAGD---DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASID-SIGTVIYWEL 174 (945)
Q Consensus 99 l~~~~~~V~~l~fspdg~~Lasgs~---Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s-~Dg~I~iwDl 174 (945)
..... ....++++++++.+.++.. ++.+.+.|..+............+ ..++++|+|+.++.+. .++.|.+.|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 54333 5678999999988887765 688999999988888775544445 8999999999776665 6789999997
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEe-ecCCCCCCeEEEEEcCCCC
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK---NDVVMYDRDTAEKLFS-LRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d---g~I~vwD~~t~~~~~~-~~~~h~~~I~~l~fSpdg~ 250 (945)
......+ ....... ........+.++|+|.++.+.... +.+.+.|..++..... ...... ....+..+|+|.
T Consensus 190 ~~~~v~~--~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 190 SGNSVVR--GSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGK 265 (381)
T ss_pred CCcceec--ccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCC
Confidence 6655442 1100001 112233568999999977776544 5899999998876655 222122 456789999999
Q ss_pred EEEEEEC-CCeEEEEECCCCeeeeeccC----CCCeeEEEEecCC
Q 002266 251 YMATSSL-DRQILIWDVGKKLDIDRQKF----DDRICCMAWKPIG 290 (945)
Q Consensus 251 ~Lasgs~-Dg~I~IWD~~~~~~i~~~~~----~~~V~~la~spdg 290 (945)
++.+... .+.+.+.|..+......... ...+..+++.+..
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 9888744 48899999988777766432 2336666666643
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00027 Score=81.65 Aligned_cols=205 Identities=20% Similarity=0.208 Sum_probs=128.7
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEE---CC-CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAG---DD-EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE 158 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs---~D-g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~ 158 (945)
..+.+-|.. |.....+......+..-+|+|++..++..+ .. ..+.++++.++.....+. ..+.-...+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 344555543 555566666667788889999998876653 22 358999998876554443 334445678999999
Q ss_pred EEEEE-eCCC--cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEee
Q 002266 159 YLASI-DSIG--TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN---DVVMYDRDTAEKLFSL 232 (945)
Q Consensus 159 ~Las~-s~Dg--~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg---~I~vwD~~t~~~~~~~ 232 (945)
.|+.+ ..|| .|.++|+..+.... +.. ..+.-..-.|+|||++|+..+..+ .|.++++.........
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-ccc-------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 87655 4556 46777777666322 221 112223578999999998876532 5888888866553222
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECC-Ce--EEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcC
Q 002266 233 RGDHVQPICFLSWSPNGKYMATSSLD-RQ--ILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVM 299 (945)
Q Consensus 233 ~~~h~~~I~~l~fSpdg~~Lasgs~D-g~--I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~D 299 (945)
.. ...-..-.|||+|++|+..+.. |. |.+.|+.++..............-.|.+++..+...+..
T Consensus 323 ~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 323 FS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred cc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 21 1222267899999999887743 44 666777665544433444444556677777766655443
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00039 Score=82.33 Aligned_cols=203 Identities=12% Similarity=0.157 Sum_probs=130.2
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCC-EEEEEEecCCCEEEEEECCC-----cEEEEEcCCC-
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLP-IRVLAFNKSGSMLAAAGDDE-----GIKLINTIDG- 135 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~-V~~l~fspdg~~Lasgs~Dg-----~I~iwd~~~~- 135 (945)
.|+| |++.+..++.|+.+|.|.+++- .-+....+..+... |..+-...+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 5788889999999999988872 33444666666666 44443333446777766654 4899998642
Q ss_pred -----eEE--EEEec-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEc
Q 002266 136 -----SIA--RVLKG-----HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWS 203 (945)
Q Consensus 136 -----~~~--~~l~~-----h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s 203 (945)
.++ ..+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-. ..+..............+|+.+++.
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhccccceeeeccCCCCceeeEEe
Confidence 223 12222 24678999999999999999999999988421 1111100001111335789999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeee
Q 002266 204 PDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDI 272 (945)
Q Consensus 204 pdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i 272 (945)
.+++.++.......|.+|.+....+.......|..++.|..+++...-+++++ +..|.+|+.......
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 98887333334567999998844434443344778899999987655344444 456999998754433
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00077 Score=78.49 Aligned_cols=280 Identities=12% Similarity=0.063 Sum_probs=160.3
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~ 96 (945)
...|.--+++..+++|+.|+ .-|.+++|+-..+........+..+.+..+..+++..++|.|+..|.|.++.+..+...
T Consensus 33 ~~~v~lTc~dst~~~l~~Gs-S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGS-SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEec-ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 35565566888999999987 88999999866553333333334456667778888888889999999999988664321
Q ss_pred e-----ec-ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC----eEEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 97 T-----NI-TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG----SIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 97 ~-----~l-~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~----~~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
. .. ..|...|++++|++++..+.+|...|.|.+..+... ...+.+..-.+.|..+.+. ++ +|++++.-
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTLT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhhhh
Confidence 1 11 236778999999999999999999999998877662 1223333455777777765 33 34333332
Q ss_pred CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC----CCEEEEEeCCCeEEEEECCC-CcEEEee--cCC----
Q 002266 167 GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD----GETLAVPGLKNDVVMYDRDT-AEKLFSL--RGD---- 235 (945)
Q Consensus 167 g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd----g~~La~gs~dg~I~vwD~~t-~~~~~~~--~~~---- 235 (945)
. ..++++..+. +..+.....+ .-.-...||-|. .+-.++++. ...++|..+- |+.+.+. +..
T Consensus 190 r-~~Lc~tE~et-i~QIG~k~R~----~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~~G~V~~Thqfk~ala~~ 262 (726)
T KOG3621|consen 190 R-CILCQTEAET-ITQIGKKPRK----SLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADFAGEVIKTHQFKDALARP 262 (726)
T ss_pred h-hheeecchhH-HHHhcCCCcC----CccccceEEeeccccCCCceEEEec-CCCceEEeecceeEEEeeehhhhhccC
Confidence 2 3445554432 1111111000 001123455443 233334333 3356665431 2222211 100
Q ss_pred ------CC-----------CCeEEEEEcC----CCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEE
Q 002266 236 ------HV-----------QPICFLSWSP----NGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALA 294 (945)
Q Consensus 236 ------h~-----------~~I~~l~fSp----dg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~La 294 (945)
+. ..-..+.|.. .+.++.+-+.-| |+|+|..+..++........|..++- .++-|+
T Consensus 263 p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~--~~neiF 339 (726)
T KOG3621|consen 263 PAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSH--CGNEIF 339 (726)
T ss_pred CCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeecCCCceeEEee--cCceEE
Confidence 00 0011111111 122344444334 88999988877766544455655544 466788
Q ss_pred EEEcCCeEEEEecCC
Q 002266 295 VIDVMGKYGVWESVV 309 (945)
Q Consensus 295 s~s~DG~I~iWd~~~ 309 (945)
+-..||.+++..+..
T Consensus 340 vL~~d~~l~~~sv~s 354 (726)
T KOG3621|consen 340 VLNLDRGLKVESVAS 354 (726)
T ss_pred EEecCCceeEEEeeh
Confidence 888888777776544
No 333
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=0.00012 Score=86.67 Aligned_cols=180 Identities=22% Similarity=0.229 Sum_probs=134.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCC
Q 002266 114 SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSD 193 (945)
Q Consensus 114 dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~ 193 (945)
++..++.|+-...+..+|+++.+..+...-....|.-|.. +++++.+|...|+|.+-|.++.+.++++..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs------ 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS------ 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc------
Confidence 4567788888888999999998877776655555665654 57899999999999999999999999987543
Q ss_pred CCCceEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEE
Q 002266 194 PSSMNVLSWSPDGETLAVPGL---------KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPN-GKYMATSSLDRQILI 263 (945)
Q Consensus 194 ~~~i~~l~~spdg~~La~gs~---------dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~I 263 (945)
+.+ ..|+-.|+.|++++. |.-|+|||++..+.+.-+.- +.+ ..-+.|.|. ...+++++..|...+
T Consensus 218 -~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-~~~-P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 218 -GSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-PYG-PQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred -cce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-ccC-chhhhhcccccceEEEEecccceee
Confidence 333 456667999998875 45689999998776544432 222 245678884 456778888899999
Q ss_pred EEC---CCCee-e-eeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 264 WDV---GKKLD-I-DRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 264 WD~---~~~~~-i-~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
-|. ..... + ........+..+.+++.|+.|+.+..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 994 32211 1 1223345599999999999999999999999997
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.02 E-value=0.00075 Score=79.42 Aligned_cols=224 Identities=14% Similarity=0.110 Sum_probs=138.4
Q ss_pred EEEEEcCCcEEEEEcCCCeeeeecccCCC-------------CEE-----------------EEEEe---cCCCEEEEEE
Q 002266 76 LASGSIDHSVKLYKFPGGEFQTNITRFTL-------------PIR-----------------VLAFN---KSGSMLAAAG 122 (945)
Q Consensus 76 Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~-------------~V~-----------------~l~fs---pdg~~Lasgs 122 (945)
|.+|+..|.|+|+-+++++.+..+.-+.. .|. .+++. .||++|.+-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 56788889999999988876655432110 010 01111 2667777765
Q ss_pred C-CCcEEEEEcCCCeEEEEEec-CCCCEEEE-------------------EEccCCCEEEEE-eCCCcEEEEEccCCeee
Q 002266 123 D-DEGIKLINTIDGSIARVLKG-HKGPVTGL-------------------AFDPNSEYLASI-DSIGTVIYWELQSGREL 180 (945)
Q Consensus 123 ~-Dg~I~iwd~~~~~~~~~l~~-h~~~V~~l-------------------afspdg~~Las~-s~Dg~I~iwDl~t~~~i 180 (945)
. ...|...++...++...+.- ....+..+ -++|+|+.+... -..+.+.+.|..+.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 45566666665443332221 11122222 234455544322 22356777777776655
Q ss_pred eeecccCCCCCCCCCCceEEEEcCCCCEEEEEe----------------------------------------CCCeEEE
Q 002266 181 HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG----------------------------------------LKNDVVM 220 (945)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs----------------------------------------~dg~I~v 220 (945)
.++... .....+.++|+|+++++.+ .++.|.+
T Consensus 229 ~qV~Vd--------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~V 300 (635)
T PRK02888 229 WQVMVD--------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPV 300 (635)
T ss_pred EEEEeC--------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEE
Confidence 554321 1223466777777766654 1245778
Q ss_pred EECCC-----CcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCee------------eeeccCCCCee
Q 002266 221 YDRDT-----AEKLFSLRGDHVQPICFLSWSPNGKYMATSSL-DRQILIWDVGKKLD------------IDRQKFDDRIC 282 (945)
Q Consensus 221 wD~~t-----~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~-Dg~I~IWD~~~~~~------------i~~~~~~~~V~ 282 (945)
+|..+ ...+..+. -......+.+||||+++++++. +.+|.|.|+.+.+. +..........
T Consensus 301 ID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL 378 (635)
T PRK02888 301 VDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL 378 (635)
T ss_pred EECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc
Confidence 88776 34444444 3456778999999999877654 89999999988553 34444556677
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 283 CMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 283 ~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
..+|.++|+...+...|..|..|++..
T Consensus 379 HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 379 HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEECCCCCEEEeEeecceeEEEehHH
Confidence 889999999888889999999999764
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.0037 Score=72.35 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=116.0
Q ss_pred cEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE-------ecCCCCEEEEEEccC
Q 002266 84 SVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL-------KGHKGPVTGLAFDPN 156 (945)
Q Consensus 84 ~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l-------~~h~~~V~~lafspd 156 (945)
.|.||+. .|+.+..+.-..+.+.++.|+.+ ..|++...||.+++||+. |.....+ ......+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 4888885 45556665555589999999886 455666799999999986 3331111 111122222333335
Q ss_pred CCEEEEEeCCCcEEEEEccCCe-eeeeecccCCCCC---CCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee
Q 002266 157 SEYLASIDSIGTVIYWELQSGR-ELHNLKRVAPDIG---SDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 157 g~~Las~s~Dg~I~iwDl~t~~-~i~~~~~~~~~~~---~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~ 232 (945)
| ++.-..++.+.+..-.... ....+........ ..........++.+....+....++.+.+.+....+. +
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 5 3333344554444322211 1111111100000 0000000123444455555545556666555443322 2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCC--CCeeEEEEecCCCEEEEEEcCCeEEEEe
Q 002266 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFD--DRICCMAWKPIGNALAVIDVMGKYGVWE 306 (945)
Q Consensus 233 ~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~--~~V~~la~spdg~~Las~s~DG~I~iWd 306 (945)
. ..+++..++.||+|++||.-..+|.+.|...+-.+.+...... .....+.|+-+...++.. ...|.+..
T Consensus 214 ~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 214 D--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred c--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1 2468999999999999999999999999987766666554443 677889998765433333 33444443
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.00099 Score=77.24 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=124.7
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 140 (945)
.-....+.++|+|+++++ +.+|.-.||......... .+.....+|.+. ..+|+-...+.|.|+.--+......
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccccceE
Confidence 345789999999999988 557888888844433322 233456889885 4577777788899974322222223
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEE
Q 002266 141 LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVM 220 (945)
Q Consensus 141 l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~v 220 (945)
+.. ...+..|-. |.+|+..+. +.|.+||+.+++.+..+.. ..|..+.|+++|.+++..+ +..+++
T Consensus 105 i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---------~~vk~V~Ws~~g~~val~t-~~~i~i 169 (443)
T PF04053_consen 105 IKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV---------SAVKYVIWSDDGELVALVT-KDSIYI 169 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----------E-EEEEE-TTSSEEEEE--S-SEEE
T ss_pred EcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---------CCCcEEEEECCCCEEEEEe-CCeEEE
Confidence 332 123454543 777777665 4899999999999988863 2367899999999999987 557777
Q ss_pred EECCCC--------------cEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEE
Q 002266 221 YDRDTA--------------EKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAW 286 (945)
Q Consensus 221 wD~~t~--------------~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~ 286 (945)
++.... ..+.++ ...|.+.+|.-+ .++-.+.. .|+. +-.|..........++.=+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEE
T ss_pred EEecchhcccccccCchhceEEEEEe----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEE
Confidence 765433 222222 357889999766 44444444 6766 444444444344567888888
Q ss_pred ecCCCEEEEEEcCCeEEEEecC
Q 002266 287 KPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 287 spdg~~Las~s~DG~I~iWd~~ 308 (945)
.+..+.|...+.++.|..+.+.
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 8888899999999999999764
No 337
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.97 E-value=2.1e-05 Score=58.27 Aligned_cols=38 Identities=32% Similarity=0.703 Sum_probs=36.2
Q ss_pred eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
+++..+.+|...|.+|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.97 E-value=0.0013 Score=76.33 Aligned_cols=217 Identities=13% Similarity=0.178 Sum_probs=119.8
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT 97 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~ 97 (945)
-....+.++|+|+++++++ +|...|+..... .. ...+.-...+|.+.+ .+|+-...+.|.|+.--+.....
T Consensus 33 ~~p~~ls~npngr~v~V~g--~geY~iyt~~~~---r~---k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG--DGEYEIYTALAW---RN---KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE--TTEEEEEETTTT---EE---EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred cCCeeEEECCCCCEEEEEc--CCEEEEEEccCC---cc---cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 3467899999999999975 888888873221 11 112445678899855 56666778889997422222212
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG 177 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~ 177 (945)
.+. ....+..|-. |.+|++.+.+ .|.+||+.+++.++.+... +|..+.|+++|++++..+.+ .+.|++....
T Consensus 104 ~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 222 1223444433 8888777655 7999999999999888743 48999999999999988765 5777664332
Q ss_pred --------------eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEeecCCCCCCeE
Q 002266 178 --------------RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE--KLFSLRGDHVQPIC 241 (945)
Q Consensus 178 --------------~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~--~~~~~~~~h~~~I~ 241 (945)
..+..+ ...|.+.+|.-+ .++..+.. .|+.+ -.|+ .+..+ ..++.
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~----------~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~l----d~~~y 236 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI----------SERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHL----DKPLY 236 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-----------S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-----SS--E
T ss_pred hcccccccCchhceEEEEEe----------cceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEc----CCceE
Confidence 122221 245677888755 55555544 66663 3333 23333 34677
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 002266 242 FLSWSPNGKYMATSSLDRQILIWDVGKKL 270 (945)
Q Consensus 242 ~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~ 270 (945)
-+.+.+....+.....|+.|..+.+....
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 77888877788888888888888776543
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.0064 Score=70.18 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=65.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 235 DHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 235 ~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
+....|.+++++|+...|+.|+.||.|.+||...+..... ...-.++.++|||+|..+++|+..|.+.+||+...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4678999999999999999999999999999987744433 44556899999999999999999999999998743
No 340
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.94 E-value=2.6e-05 Score=57.80 Aligned_cols=39 Identities=36% Similarity=0.808 Sum_probs=35.8
Q ss_pred CcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002266 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265 (945)
Q Consensus 226 ~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD 265 (945)
|+++..+.+ |...|++++|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456778877 999999999999999999999999999997
No 341
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.93 E-value=0.007 Score=72.34 Aligned_cols=282 Identities=13% Similarity=0.110 Sum_probs=161.1
Q ss_pred CCEEEEEEcCCCeEEEEcCCCCccccccccccccceE----------EEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee
Q 002266 29 AHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVT----------ALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 29 g~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~----------~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~ 98 (945)
+..|++++ .++.|.-.|..++....+.-..-...+. .+++. +..++.++.++.|..+|..+|+.+-.
T Consensus 69 ~g~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 34555554 5777888888777543322111001111 12222 34677778899999999999987755
Q ss_pred cccCC----CCEEEEEEecCCCEEEEEEC------CCcEEEEEcCCCeEEEEEecCC-----------------------
Q 002266 99 ITRFT----LPIRVLAFNKSGSMLAAAGD------DEGIKLINTIDGSIARVLKGHK----------------------- 145 (945)
Q Consensus 99 l~~~~----~~V~~l~fspdg~~Lasgs~------Dg~I~iwd~~~~~~~~~l~~h~----------------------- 145 (945)
..... ..+.+.-..-++ .++++.. +|.|..+|.++|+.+..+..-.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 43211 111111111144 4555432 6789999999998776543211
Q ss_pred --------CCE-EEEEEccCCCEEEEEeCC-----C-----------cEEEEEccCCeeeeeecccCCCCCCCC--CCce
Q 002266 146 --------GPV-TGLAFDPNSEYLASIDSI-----G-----------TVIYWELQSGRELHNLKRVAPDIGSDP--SSMN 198 (945)
Q Consensus 146 --------~~V-~~lafspdg~~Las~s~D-----g-----------~I~iwDl~t~~~i~~~~~~~~~~~~~~--~~i~ 198 (945)
..+ ..++++|...+++.+..+ + .|.-.|+++|+....++......-... ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 011 134777777777666522 2 577788999988877765433322111 1222
Q ss_pred EEEEcCCCC---EEEEEeCCCeEEEEECCCCcEEEeec-----------CCCC-CCe-----------------------
Q 002266 199 VLSWSPDGE---TLAVPGLKNDVVMYDRDTAEKLFSLR-----------GDHV-QPI----------------------- 240 (945)
Q Consensus 199 ~l~~spdg~---~La~gs~dg~I~vwD~~t~~~~~~~~-----------~~h~-~~I----------------------- 240 (945)
-+.+..+|+ .++.++.+|.++++|..+++.+...+ .... .++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 334445776 78889999999999999998762210 0000 000
Q ss_pred -----EEEEEcCCCCEEEEEECC---------------------------------CeEEEEECCCCeeeeeccCCCCee
Q 002266 241 -----CFLSWSPNGKYMATSSLD---------------------------------RQILIWDVGKKLDIDRQKFDDRIC 282 (945)
Q Consensus 241 -----~~l~fSpdg~~Lasgs~D---------------------------------g~I~IWD~~~~~~i~~~~~~~~V~ 282 (945)
..++++|...+++....+ |.|.-+|+.+++..-......+..
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 114566655544433222 457778888887776654433322
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEecCCCCCCC
Q 002266 283 CMAWKPIGNALAVIDVMGKYGVWESVVPSSMK 314 (945)
Q Consensus 283 ~la~spdg~~Las~s~DG~I~iWd~~~~~~~~ 314 (945)
.-...-.+..++.++.+|.++.+|..+++.+-
T Consensus 465 ~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 465 GGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 11222345577778889999999999887643
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00055 Score=79.06 Aligned_cols=190 Identities=21% Similarity=0.235 Sum_probs=122.8
Q ss_pred cccccccceEEEEEecCCCEEEEEE---cC-CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEEC-CC--cEE
Q 002266 56 ILRHHRDGVTALALSPNSTCLASGS---ID-HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGD-DE--GIK 128 (945)
Q Consensus 56 ~l~~h~~~V~~la~spdg~~Lasgs---~D-g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~ 128 (945)
.+..-...+..-+|+|++..++... .. ..+.++++.+++....+. ..+.-...+|+|||+.|+.+.. || .|+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 3344455677889999998776543 22 469999998887555444 4555667899999998887754 44 477
Q ss_pred EEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe-CCC--cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC
Q 002266 129 LINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASID-SIG--TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD 205 (945)
Q Consensus 129 iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s-~Dg--~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd 205 (945)
++|+..+... .+....+.-..-.|+|+|++++..+ ..| .|.++++..+... .+... . ..-....|+|+
T Consensus 266 ~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~---~----~~~~~p~~Spd 336 (425)
T COG0823 266 LMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS---G----GGNSNPVWSPD 336 (425)
T ss_pred EEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc---C----CCCcCccCCCC
Confidence 7888776633 3554444445788999999887654 445 4666666555442 22211 1 11125789999
Q ss_pred CCEEEEEeCC-Ce--EEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC
Q 002266 206 GETLAVPGLK-ND--VVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL 257 (945)
Q Consensus 206 g~~La~gs~d-g~--I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~ 257 (945)
|++|+..+.. |. |.++|+.++.....+. .......-.|.++|+.+...+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEecc
Confidence 9999887743 33 7777777666433333 3334455678889888776654
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=4.9e-06 Score=94.78 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=132.7
Q ss_pred CCEEEEEECCCCC-EEEEEEcCCCeEEEEcCCCCccc-cccccccccceEEEEEec-CCCEEEEEE----cCCcEEEEEc
Q 002266 18 ASFCSILWDQQAH-HLVTASSSETTISIHDPLLPSNL-PKILRHHRDGVTALALSP-NSTCLASGS----IDHSVKLYKF 90 (945)
Q Consensus 18 ~~V~svafspdg~-~L~t~g~~dg~V~IWd~~~~~~~-~~~l~~h~~~V~~la~sp-dg~~Lasgs----~Dg~V~iwdl 90 (945)
..+.|+++..+.+ .|++.|..+|.|.+-....+... .....+|...+++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4577787766554 56666668899999876654433 455667888999999999 677888773 3567999999
Q ss_pred CCC--eee--eeccc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEcc-CCCEEEEEe
Q 002266 91 PGG--EFQ--TNITR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDP-NSEYLASID 164 (945)
Q Consensus 91 ~~g--~~~--~~l~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafsp-dg~~Las~s 164 (945)
.++ .+. ..+.. ......+++|..+.+++.+|.....++++|++.... ....-.+..+..+..+| .+.|+++-.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc
Confidence 876 111 11221 234556888988889999999999999999974321 11122334677788888 777887665
Q ss_pred CCCcEEEEEc-cCCe-eeeeecccCCCCCCCCCCceEEEEcCC-CCEEEEEe-CCCeEEEEECC
Q 002266 165 SIGTVIYWEL-QSGR-ELHNLKRVAPDIGSDPSSMNVLSWSPD-GETLAVPG-LKNDVVMYDRD 224 (945)
Q Consensus 165 ~Dg~I~iwDl-~t~~-~i~~~~~~~~~~~~~~~~i~~l~~spd-g~~La~gs-~dg~I~vwD~~ 224 (945)
||.|.+||. +.-+ .+..+.. ........+..++|+|. ...+++.. ..++|++||+.
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~---~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILR---NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhccHHHHHhh---CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999993 3222 1211111 11111235788999993 23344444 45688888875
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.81 E-value=8.4e-06 Score=92.98 Aligned_cols=199 Identities=19% Similarity=0.262 Sum_probs=133.8
Q ss_pred CCEEEEEEecC--CCEEEEEECCCcEEEEEcCCCeE--EEEEecCCCCEEEEEEcc-CCCEEEEEe----CCCcEEEEEc
Q 002266 104 LPIRVLAFNKS--GSMLAAAGDDEGIKLINTIDGSI--ARVLKGHKGPVTGLAFDP-NSEYLASID----SIGTVIYWEL 174 (945)
Q Consensus 104 ~~V~~l~fspd--g~~Lasgs~Dg~I~iwd~~~~~~--~~~l~~h~~~V~~lafsp-dg~~Las~s----~Dg~I~iwDl 174 (945)
..+.|+++..+ ...+++|..+|.|.+-.++...- .....++..+.++++|++ |.++||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34667766553 35788999999999988876432 234456888999999998 556777763 3567999999
Q ss_pred cCCeeeeeecccCCCCC-CCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEeecCCCCCCeEEEEEcC-CCCE
Q 002266 175 QSGRELHNLKRVAPDIG-SDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE-KLFSLRGDHVQPICFLSWSP-NGKY 251 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~-~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~-~~~~~~~~h~~~I~~l~fSp-dg~~ 251 (945)
.++-.+..-. +.+. .......++||..+.+++.+|.....+.++|++... ....+ ....+..+..+| .+.|
T Consensus 137 ~s~ltvPke~---~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 137 NSLLTVPKES---PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNY 210 (783)
T ss_pred ccccCCCccc---cccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCc
Confidence 8872211000 1111 122345689999889999999988899999998332 22222 234566778888 7888
Q ss_pred EEEEECCCeEEEEEC-CC-CeeeeeccC-----CCCeeEEEEecCCC-EEEEEE-cCCeEEEEecCC
Q 002266 252 MATSSLDRQILIWDV-GK-KLDIDRQKF-----DDRICCMAWKPIGN-ALAVID-VMGKYGVWESVV 309 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~-~~-~~~i~~~~~-----~~~V~~la~spdg~-~Las~s-~DG~I~iWd~~~ 309 (945)
+++-. ||.|.+||. .. ..++....+ ...+..++|+|... .|++.. ..++|+++++..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 88877 999999994 22 223333322 23599999999654 455555 457899998754
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.0087 Score=71.16 Aligned_cols=239 Identities=10% Similarity=0.108 Sum_probs=140.8
Q ss_pred CEEEEEEcCCCeEEEEcCCCCcccccccccccc--ceEEEEEec--CCCEEEEEE---------cCCcEEEEEcCCCeee
Q 002266 30 HHLVTASSSETTISIHDPLLPSNLPKILRHHRD--GVTALALSP--NSTCLASGS---------IDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~--~V~~la~sp--dg~~Lasgs---------~Dg~V~iwdl~~g~~~ 96 (945)
..+++++ .++.|.-+|..+++...+. ..... .-..+.-+| .+..++.++ .+|.|..+|..+|+..
T Consensus 111 ~~V~v~~-~~g~v~AlD~~TG~~~W~~-~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGT-FDGRLVALDAETGKQVWKF-GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEec-CCCeEEEEECCCCCEeeee-cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 4555554 7889999998887543322 21111 000111111 123455543 3678999999998876
Q ss_pred eecccCCC--------------------CE-EEEEEecCCCEEEEEECCC------------------cEEEEEcCCCeE
Q 002266 97 TNITRFTL--------------------PI-RVLAFNKSGSMLAAAGDDE------------------GIKLINTIDGSI 137 (945)
Q Consensus 97 ~~l~~~~~--------------------~V-~~l~fspdg~~Lasgs~Dg------------------~I~iwd~~~~~~ 137 (945)
-....... .+ ...++.+.+..+++++.++ .|.-+|..+|+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 65433111 01 1234445567788877665 688999999998
Q ss_pred EEEEecCCCCEE------EEEEc----cCCC---EEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcC
Q 002266 138 ARVLKGHKGPVT------GLAFD----PNSE---YLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSP 204 (945)
Q Consensus 138 ~~~l~~h~~~V~------~lafs----pdg~---~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp 204 (945)
...+..-..... ...+. -++. .+++++.+|.+...|..+|+.+........ .++.+|
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~----------~~~~~~ 338 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ----------PMAYDP 338 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc----------ccccCC
Confidence 877642111110 01111 1333 577888899999999999998876543100 122222
Q ss_pred CCCEEEE------------------EeCCCeEEEEECCCCcEEEeecCC-CC------CCeEEEEEcCCCCEEEEEECCC
Q 002266 205 DGETLAV------------------PGLKNDVVMYDRDTAEKLFSLRGD-HV------QPICFLSWSPNGKYMATSSLDR 259 (945)
Q Consensus 205 dg~~La~------------------gs~dg~I~vwD~~t~~~~~~~~~~-h~------~~I~~l~fSpdg~~Lasgs~Dg 259 (945)
..+++ ...+|.|.-+|+.+++.+.+.... +. .+...-...-.+.+|+.++.||
T Consensus 339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG 416 (488)
T cd00216 339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG 416 (488)
T ss_pred --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence 22222 124678999999999988776542 00 1111001112567888888999
Q ss_pred eEEEEECCCCeeeeeccCCCCee
Q 002266 260 QILIWDVGKKLDIDRQKFDDRIC 282 (945)
Q Consensus 260 ~I~IWD~~~~~~i~~~~~~~~V~ 282 (945)
.|+.+|..+++.+-.......+.
T Consensus 417 ~l~ald~~tG~~lW~~~~~~~~~ 439 (488)
T cd00216 417 YFRAFDATTGKELWKFRTPSGIQ 439 (488)
T ss_pred eEEEEECCCCceeeEEECCCCce
Confidence 99999999999998876655554
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.78 E-value=0.015 Score=62.19 Aligned_cols=205 Identities=17% Similarity=0.271 Sum_probs=114.4
Q ss_pred ecccCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCeEEEEEecC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 002266 98 NITRFTLPIRVLAFNKSGS-MLAAAGDDEGIKLINTIDGSIARVLKGH-KGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~l~~h-~~~V~~lafspdg~~Las~s~Dg~I~iwDl~ 175 (945)
.+.+....+..++|.|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999755 5555666777877886 57777776543 3567899998888777777678999999984
Q ss_pred CCe---eeeeecccCCCC-CCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEee-------cCCCCCCeE
Q 002266 176 SGR---ELHNLKRVAPDI-GSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT---AEKLFSL-------RGDHVQPIC 241 (945)
Q Consensus 176 t~~---~i~~~~~~~~~~-~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t---~~~~~~~-------~~~h~~~I~ 241 (945)
... ............ ..+...+-.++|+|.++.|+++-...-..+|.+.. ...+... .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 421 111111111111 23445678899999877777776665566666543 1111110 111345688
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEECCCCeeeeeccCC----------CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 242 FLSWSP-NGKYMATSSLDRQILIWDVGKKLDIDRQKFD----------DRICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 242 ~l~fSp-dg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~----------~~V~~la~spdg~~Las~s~DG~I~iW 305 (945)
+++++| .|.+++.+.....|.++| .+++++...... ...-+|+|.++|+ |...+.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 999999 466777777889999999 556665543322 2467999999985 5555566655554
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.78 E-value=0.011 Score=68.64 Aligned_cols=246 Identities=13% Similarity=0.097 Sum_probs=135.8
Q ss_pred CEEEEEECCCCCEEEEEEcCC----CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCC-----------
Q 002266 19 SFCSILWDQQAHHLVTASSSE----TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDH----------- 83 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~d----g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg----------- 83 (945)
.+..+++||+|+++|.+-+.. ..++|+|+.++..+...+... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344678999999999874333 469999998875443333321 123499999988877665432
Q ss_pred cEEEEEcCCCeee--eecccCCCC--EEEEEEecCCCEEEEEECC----CcEEEEEcCCC----eEEEEEecCCCCEEEE
Q 002266 84 SVKLYKFPGGEFQ--TNITRFTLP--IRVLAFNKSGSMLAAAGDD----EGIKLINTIDG----SIARVLKGHKGPVTGL 151 (945)
Q Consensus 84 ~V~iwdl~~g~~~--~~l~~~~~~--V~~l~fspdg~~Lasgs~D----g~I~iwd~~~~----~~~~~l~~h~~~V~~l 151 (945)
.|+.|.+.+.... ..+...... ...+..++++++|++.... ..+++.++..+ .....+......+...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788887765432 223332222 5688899999998875443 34788888774 2333344344444433
Q ss_pred EEccCCCEEEEEeC---CCcEEEEEccCCee--ee-eecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CC--eEEEEE
Q 002266 152 AFDPNSEYLASIDS---IGTVIYWELQSGRE--LH-NLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KN--DVVMYD 222 (945)
Q Consensus 152 afspdg~~Las~s~---Dg~I~iwDl~t~~~--i~-~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg--~I~vwD 222 (945)
.-+..+.+++.+.. ++.|...++..... .. .+. .+...+.-..+...+.+|++... ++ .|++++
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-------~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-------PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---------SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-------CCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 33334444444432 35677777766542 11 111 11122222333444556665443 33 688999
Q ss_pred CCCCcEEEeecCCCCCCeEEEEEcCCCCEEE-E-EEC--CCeEEEEECCCCeeee
Q 002266 223 RDTAEKLFSLRGDHVQPICFLSWSPNGKYMA-T-SSL--DRQILIWDVGKKLDID 273 (945)
Q Consensus 223 ~~t~~~~~~~~~~h~~~I~~l~fSpdg~~La-s-gs~--Dg~I~IWD~~~~~~i~ 273 (945)
+..+.....+.....+.|..+...+++..+. + .+. -++++.||+.+++...
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 9844444444443445566666566555433 2 222 3678889998876543
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.73 E-value=0.0051 Score=65.73 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=113.9
Q ss_pred ccccccceEEEEEecCCC-EEEEEEcCCcEEEEEcCCCeeeeecccC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 002266 57 LRHHRDGVTALALSPNST-CLASGSIDHSVKLYKFPGGEFQTNITRF-TLPIRVLAFNKSGSMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 57 l~~h~~~V~~la~spdg~-~Lasgs~Dg~V~iwdl~~g~~~~~l~~~-~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 134 (945)
+.+-...+..|+|+|+.. ++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++++--.++.+.++++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 344455699999999765 5555666788888886 57777665433 35688899988876666655588899988843
Q ss_pred Ce------EEEEEe-----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC---Ceeeeeec--ccCCCCCCCCCCce
Q 002266 135 GS------IARVLK-----GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS---GRELHNLK--RVAPDIGSDPSSMN 198 (945)
Q Consensus 135 ~~------~~~~l~-----~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t---~~~i~~~~--~~~~~~~~~~~~i~ 198 (945)
.. ....+. .+...+-.++|+|.++.|+++-...-..+|.+.. ...+.... .... .......+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S 174 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLS 174 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceecccc
Confidence 21 111221 2446689999999888888777766677777654 22211111 1110 111223467
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEee--cCCC------CCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002266 199 VLSWSP-DGETLAVPGLKNDVVMYDRDTAEKLFSL--RGDH------VQPICFLSWSPNGKYMATSSLDRQILIW 264 (945)
Q Consensus 199 ~l~~sp-dg~~La~gs~dg~I~vwD~~t~~~~~~~--~~~h------~~~I~~l~fSpdg~~Lasgs~Dg~I~IW 264 (945)
.++++| .|.+++.......|..+| .+|+.+..+ .... -...-.|+|.++|++.+++ .-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 899999 566777777788999999 457665443 2211 1356789999999655544 55656554
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.72 E-value=0.0015 Score=74.24 Aligned_cols=238 Identities=18% Similarity=0.267 Sum_probs=132.1
Q ss_pred ecCCCEEEEEE---------cCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 002266 70 SPNSTCLASGS---------IDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140 (945)
Q Consensus 70 spdg~~Lasgs---------~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 140 (945)
|||+++++... ..+.+.|||+.+++...... ....+....|+|+|+.++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777777642 24678999999987554433 366788999999999999986 56899999877744332
Q ss_pred EecC-----------------CCCEEEEEEccCCCEEEEEeCC-CcEEEEEc---cCC-e---eeeeeccc---------
Q 002266 141 LKGH-----------------KGPVTGLAFDPNSEYLASIDSI-GTVIYWEL---QSG-R---ELHNLKRV--------- 186 (945)
Q Consensus 141 l~~h-----------------~~~V~~lafspdg~~Las~s~D-g~I~iwDl---~t~-~---~i~~~~~~--------- 186 (945)
.... -+.-..+-|+||+++|+....| ..|..+.+ ... . .+..+.-.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2111 1123568899999998876543 23333222 111 1 11111100
Q ss_pred --------CCC---------CCCCCCCceEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEeecC---CCCCCeE
Q 002266 187 --------APD---------IGSDPSSMNVLSWSPDGETLAVPGLK-----NDVVMYDRDTAEKLFSLRG---DHVQPIC 241 (945)
Q Consensus 187 --------~~~---------~~~~~~~i~~l~~spdg~~La~gs~d-----g~I~vwD~~t~~~~~~~~~---~h~~~I~ 241 (945)
... .......+..+.|.++++.|++...+ ..+.++|..++.....+.. ..-..-.
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 000 01123446789999998845443322 2477788877664332221 1222233
Q ss_pred EEEEc-CCCC-EEEEEECCC--eEEEEECCCCeeeeeccCCCCeeE-EEEecCCCEEEEEEcC---CeEEEEecCC
Q 002266 242 FLSWS-PNGK-YMATSSLDR--QILIWDVGKKLDIDRQKFDDRICC-MAWKPIGNALAVIDVM---GKYGVWESVV 309 (945)
Q Consensus 242 ~l~fS-pdg~-~Lasgs~Dg--~I~IWD~~~~~~i~~~~~~~~V~~-la~spdg~~Las~s~D---G~I~iWd~~~ 309 (945)
...|. +++. +|.....+| .|.+++...+.........-.|.. +.|+++++.|+..+.. +.-.+|.+..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 55554 6554 555555666 466667777775544444555754 6788888876654432 3445555443
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.034 Score=64.46 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=114.4
Q ss_pred EEEECCCCCEEEEEEcC---------CC-eEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcC
Q 002266 22 SILWDQQAHHLVTASSS---------ET-TISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 22 svafspdg~~L~t~g~~---------dg-~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~ 91 (945)
.++.+|.|..+|+.... .. .|.||+.... ....+.-..+.|.++.|+.+. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK--LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC--EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 34567777777776411 01 5888885432 233333333899999999865 55566889999999986
Q ss_pred CCeeeeeccc--CCCCE-----EEEEEecCCCEEEEEECCCcEEEEEcCCCe-EEEEEecCCCCEE----------EEEE
Q 002266 92 GGEFQTNITR--FTLPI-----RVLAFNKSGSMLAAAGDDEGIKLINTIDGS-IARVLKGHKGPVT----------GLAF 153 (945)
Q Consensus 92 ~g~~~~~l~~--~~~~V-----~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~l~~h~~~V~----------~laf 153 (945)
|+....+.. ....| ....+..+| +++-..++.+.+..-.... ....+..-..... ...+
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 333111110 11122 222333345 3333445555554332221 1111110000000 0223
Q ss_pred ccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeec
Q 002266 154 DPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 154 spdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~ 233 (945)
+.+....+....++.+.+.+-...+. . ...+++..++.||+|+++|.-+.+|.+.+...+-.+....+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 33344444444444444333211100 1 123578899999999999999999999999887666776666
Q ss_pred CCCCCCeEEEEEcCCCC
Q 002266 234 GDHVQPICFLSWSPNGK 250 (945)
Q Consensus 234 ~~h~~~I~~l~fSpdg~ 250 (945)
.........+.|+-+..
T Consensus 256 ~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 256 TDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cCcCCCCcEEEEECCCc
Confidence 54445667788866543
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.63 E-value=0.0055 Score=70.74 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=82.4
Q ss_pred CCEEEEEEec-CCCEEEEE----ECCCc----EEEEEcCCCeEEE---EEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 104 LPIRVLAFNK-SGSMLAAA----GDDEG----IKLINTIDGSIAR---VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 104 ~~V~~l~fsp-dg~~Lasg----s~Dg~----I~iwd~~~~~~~~---~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
....++.|+. +...+.+. +.+|. -.+|++..++... +--.....|.+++++|+.+.|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446677775 33444443 23343 2456665443211 11246789999999999999999999999999
Q ss_pred EEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee
Q 002266 172 WELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~ 232 (945)
||...+....... .-..+.++|||+|..+++|+..|.+.+||+.-......+
T Consensus 286 yD~~~~~t~~~ka---------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 286 YDTTRGVTLLAKA---------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred EEcCCCeeeeeee---------cccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 9987764332211 133577999999999999999999999998755443333
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.62 E-value=0.014 Score=66.95 Aligned_cols=229 Identities=15% Similarity=0.146 Sum_probs=130.2
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee-------------------------------------------eec
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ-------------------------------------------TNI 99 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~-------------------------------------------~~l 99 (945)
.|+.+.|+++..-|++|...|.|.||.+...+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999889999999999999976321110 011
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe--c------CCCCEEEEEEcc-----CC---CEEEEE
Q 002266 100 TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK--G------HKGPVTGLAFDP-----NS---EYLASI 163 (945)
Q Consensus 100 ~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~--~------h~~~V~~lafsp-----dg---~~Las~ 163 (945)
....++|++++.| |=-++|+|..+|.+.|+|++....+..-. . ....|+++.|.- |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1235678888887 55689999999999999998888776522 2 234688888863 33 368889
Q ss_pred eCCCcEEEEEccC---CeeeeeecccCCCCCCCCCCceEEE-EcCC-C-------------------CEEEEEeCCCeEE
Q 002266 164 DSIGTVIYWELQS---GRELHNLKRVAPDIGSDPSSMNVLS-WSPD-G-------------------ETLAVPGLKNDVV 219 (945)
Q Consensus 164 s~Dg~I~iwDl~t---~~~i~~~~~~~~~~~~~~~~i~~l~-~spd-g-------------------~~La~gs~dg~I~ 219 (945)
+..|.+.+|.+-- +.....+.... ..+.+.+..+. ++.+ | ..+++...+..++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~---~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT---TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE-----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc---ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 9999999998752 11111111111 12223333332 3211 1 1234444588999
Q ss_pred EEECCCCcEEEeecCCCCCCeEEEEEc-----CCCCEEEEEECCCeEEEEECCCCeeeeeccCC-----CCeeEEEEecC
Q 002266 220 MYDRDTAEKLFSLRGDHVQPICFLSWS-----PNGKYMATSSLDRQILIWDVGKKLDIDRQKFD-----DRICCMAWKPI 289 (945)
Q Consensus 220 vwD~~t~~~~~~~~~~h~~~I~~l~fS-----pdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~-----~~V~~la~spd 289 (945)
++...+.+....... .......+++- ..+..|++-..+|.|++|.+..-+.+...... ..+....++++
T Consensus 239 v~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 999988877665542 22233344452 35677888899999999999987777664432 23455667777
Q ss_pred CCEEEEE
Q 002266 290 GNALAVI 296 (945)
Q Consensus 290 g~~Las~ 296 (945)
|..++..
T Consensus 318 Gdi~~~~ 324 (395)
T PF08596_consen 318 GDIFYWT 324 (395)
T ss_dssp S-EEEE-
T ss_pred CCEEEEe
Confidence 7755554
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00049 Score=80.06 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=126.2
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeee
Q 002266 103 TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR-VLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELH 181 (945)
Q Consensus 103 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~-~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~ 181 (945)
...|.--++...+++++.|+.-|.+++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.++-+..+....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 4445556677788999999999999999976665332 222345667778889998899999999999999887743322
Q ss_pred eecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEeecCCCCCCeEEEEEcCCCCEEEEEEC
Q 002266 182 NLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE----KLFSLRGDHVQPICFLSWSPNGKYMATSSL 257 (945)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~----~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~ 257 (945)
.. ...+.-..|...|++++|++++..+++|...|.|..-.+.+.. ....+.. ..+.|..+... ++.+|++..
T Consensus 113 ~~-~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~-q~~LLVStl- 188 (726)
T KOG3621|consen 113 LD-YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYL-QSYLLVSTL- 188 (726)
T ss_pred ce-eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeecc-cceehHhhh-
Confidence 11 1112222467889999999999999999999999998887621 1111111 33456555543 333343333
Q ss_pred CCeEEEEECCCCeeeee--ccCCC-CeeEEEEecC----CCEEEEEEcCCeEEEEecCCC
Q 002266 258 DRQILIWDVGKKLDIDR--QKFDD-RICCMAWKPI----GNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 258 Dg~I~IWD~~~~~~i~~--~~~~~-~V~~la~spd----g~~Las~s~DG~I~iWd~~~~ 310 (945)
-. -.+++++.+...+. ..-.+ .-.+.+|-|. ..-.++++.-| .++|+....
T Consensus 189 ~r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~ 246 (726)
T KOG3621|consen 189 TR-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFA 246 (726)
T ss_pred hh-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecc
Confidence 22 34555554432222 11122 1345666654 33455565655 788986543
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.011 Score=65.41 Aligned_cols=223 Identities=17% Similarity=0.195 Sum_probs=135.4
Q ss_pred EECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeeccc--
Q 002266 24 LWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITR-- 101 (945)
Q Consensus 24 afspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~-- 101 (945)
.|.++...|+.+.-..+.|.-|+..++.. ..+. +.+.+.++..-..+..|+++.. -+.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 48888888887766788999999875532 2222 2334455555555555665432 366777765654222221
Q ss_pred ---CCCCEEEEEEecCCCEEEEEEC-----------CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC-
Q 002266 102 ---FTLPIRVLAFNKSGSMLAAAGD-----------DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI- 166 (945)
Q Consensus 102 ---~~~~V~~l~fspdg~~Lasgs~-----------Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D- 166 (945)
......++...|+|.+-+.... -|.|+.++. .+.....+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567888889876665433 133444554 566666666656667899999999888777654
Q ss_pred CcEEEEEccC--CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEeecCCCCCCeEEE
Q 002266 167 GTVIYWELQS--GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN-DVVMYDRDTAEKLFSLRGDHVQPICFL 243 (945)
Q Consensus 167 g~I~iwDl~t--~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg-~I~vwD~~t~~~~~~~~~~h~~~I~~l 243 (945)
+.|.-|++.. +........ .......+..-.++...+|.+.+++...| .|.+|+.. ++.+..+.- ....++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~--~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~ 260 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGF--VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNP 260 (307)
T ss_pred CeEEEEecCcccCccCCcceE--EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccc
Confidence 6788887752 111110000 00111223445578888888876555454 99999998 888887775 33677888
Q ss_pred EEc-CCCCEEEEEE
Q 002266 244 SWS-PNGKYMATSS 256 (945)
Q Consensus 244 ~fS-pdg~~Lasgs 256 (945)
+|- |+.+.|...+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 885 4555544443
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.60 E-value=0.043 Score=65.72 Aligned_cols=249 Identities=12% Similarity=0.099 Sum_probs=140.9
Q ss_pred CEEEEEEcCCCeEEEEcCCCCcccccccc-ccc--cceEEEEEecCCCEEEEEEc------CCcEEEEEcCCCeeeeecc
Q 002266 30 HHLVTASSSETTISIHDPLLPSNLPKILR-HHR--DGVTALALSPNSTCLASGSI------DHSVKLYKFPGGEFQTNIT 100 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~~~~~l~-~h~--~~V~~la~spdg~~Lasgs~------Dg~V~iwdl~~g~~~~~l~ 100 (945)
..+++++ .++.|.-.|..+++.+...-. .+. ..+++--.-.++ .++++.. +|.|..+|..+|+.+-.+.
T Consensus 121 ~~v~v~t-~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGT-LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEc-CCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 3455554 688888888887754433221 111 112211111144 4555432 6889999999988765433
Q ss_pred cCCC-------------------------------CEE-EEEEecCCCEEEEEECC-----C-----------cEEEEEc
Q 002266 101 RFTL-------------------------------PIR-VLAFNKSGSMLAAAGDD-----E-----------GIKLINT 132 (945)
Q Consensus 101 ~~~~-------------------------------~V~-~l~fspdg~~Lasgs~D-----g-----------~I~iwd~ 132 (945)
.... .+. .+++.+...++..+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 2111 111 23566656666666522 2 5777889
Q ss_pred CCCeEEEEEecCCCCE---------EEEEEccCCC---EEEEEeCCCcEEEEEccCCeeeeeecccC-----CCCC----
Q 002266 133 IDGSIARVLKGHKGPV---------TGLAFDPNSE---YLASIDSIGTVIYWELQSGRELHNLKRVA-----PDIG---- 191 (945)
Q Consensus 133 ~~~~~~~~l~~h~~~V---------~~lafspdg~---~Las~s~Dg~I~iwDl~t~~~i~~~~~~~-----~~~~---- 191 (945)
++|+....++.....+ .-+.+..+|+ .++.+..+|.+++.|-.+|+.+...+... ..+.
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 9998877765422211 1122234665 77889999999999999998763211000 0000
Q ss_pred -----------------------CCCC--CceEEEEcCCCCEEEEEeCC-------------------------------
Q 002266 192 -----------------------SDPS--SMNVLSWSPDGETLAVPGLK------------------------------- 215 (945)
Q Consensus 192 -----------------------~~~~--~i~~l~~spdg~~La~gs~d------------------------------- 215 (945)
...+ .-..++++|+..++++...+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 0000 01125666665555543322
Q ss_pred --CeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCCee
Q 002266 216 --NDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDRIC 282 (945)
Q Consensus 216 --g~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~ 282 (945)
|.|.-+|+.+++.+........ ..... ..-.|.+++.++.+|.++.+|.++++.+-.......+.
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~ 505 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIV 505 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCce
Confidence 4578888888888776653211 11111 12245567778889999999999999998876655444
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.019 Score=63.51 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=130.4
Q ss_pred EEecCCCEE-EEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec---
Q 002266 68 ALSPNSTCL-ASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG--- 143 (945)
Q Consensus 68 a~spdg~~L-asgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~--- 143 (945)
.|.++...| .+--..+.|.-|+..+++.. .+. ....+.++.....+..|+++. ..+.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 466666544 44445678888887766532 222 334445555544545555543 2356677765554333221
Q ss_pred --CCCCEEEEEEccCCCEEEEEeC-----C----CcEEEEEcc-CCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE
Q 002266 144 --HKGPVTGLAFDPNSEYLASIDS-----I----GTVIYWELQ-SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV 211 (945)
Q Consensus 144 --h~~~V~~lafspdg~~Las~s~-----D----g~I~iwDl~-t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~ 211 (945)
.....+.+...|+|.+.++... . ..-.+|-+. .+..+..+.. +-...+.++||||++.|++
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-------~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-------DLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-------cEEecCceEECCCCCEEEE
Confidence 1245678888999987776544 0 011344444 3444433322 1233467999999988777
Q ss_pred EeC-CCeEEEEECCC--C----cEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeeeeeccCC-CCee
Q 002266 212 PGL-KNDVVMYDRDT--A----EKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR-QILIWDVGKKLDIDRQKFD-DRIC 282 (945)
Q Consensus 212 gs~-dg~I~vwD~~t--~----~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg-~I~IWD~~~~~~i~~~~~~-~~V~ 282 (945)
+-. .+.|+.|++.. + +....+.....+..-.++...+|.+.+++..+| .|.+|+.+ ++.+..+... ..++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 654 47888887752 1 122222222456667788888998886555454 89999999 8888887766 7788
Q ss_pred EEEEe-cCCCEEEEEEc
Q 002266 283 CMAWK-PIGNALAVIDV 298 (945)
Q Consensus 283 ~la~s-pdg~~Las~s~ 298 (945)
+++|- |+.+.|++.+.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 88885 45565555443
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=0.036 Score=57.75 Aligned_cols=193 Identities=12% Similarity=0.072 Sum_probs=116.6
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEE
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLA 152 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~la 152 (945)
..+++.|+..+.+...|..+|....... ....+.+-+.- -|++++.|...|.+++.+..+|.....+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 3577778888999999998887654322 23334433333 467899999999999999999987777664433333455
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEE
Q 002266 153 FDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE--KLF 230 (945)
Q Consensus 153 fspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~--~~~ 230 (945)
.++++..+..++.|++.+..|.++...+...+.. .+...+.+..|-...|.++...|.+.-....... .+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcg-------G~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w 173 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-------GGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFW 173 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccC-------CceeccceecCCCceEEEEeccceEEEEccCCCCcceeh
Confidence 6788999999999999999999998888775432 1222334556622334444455655555554432 111
Q ss_pred eecCCCCCCeEE--EEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccCCCC
Q 002266 231 SLRGDHVQPICF--LSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKFDDR 280 (945)
Q Consensus 231 ~~~~~h~~~I~~--l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~ 280 (945)
... ..++|.+ ++ -+.++..++-||.+.-++ ..++.+.+....++
T Consensus 174 ~~~--~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 174 AAT--RFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPATKGP 219 (354)
T ss_pred hhh--cCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeecCCCc
Confidence 111 1223221 11 234455555566666555 44444444433333
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.53 E-value=0.041 Score=59.97 Aligned_cols=235 Identities=16% Similarity=0.140 Sum_probs=132.3
Q ss_pred CCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeec-------
Q 002266 27 QQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNI------- 99 (945)
Q Consensus 27 pdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l------- 99 (945)
..++.|++|+ .+| +.+++........... +...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt-~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGT-EDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEE-CCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4678888886 777 8888873332222222 234499999999777777654 599999998754433211
Q ss_pred -------ccCCCCEEEEE--EecCCCEEEEEECCCcEEEEEcCCC-----eEEEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002266 100 -------TRFTLPIRVLA--FNKSGSMLAAAGDDEGIKLINTIDG-----SIARVLKGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 100 -------~~~~~~V~~l~--fspdg~~Lasgs~Dg~I~iwd~~~~-----~~~~~l~~h~~~V~~lafspdg~~Las~s~ 165 (945)
......+...+ -...+...++......|.+|..... ...+.+. -...+.+++|. ++.++.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 11122344444 1123333444444558888877653 3444444 44788999998 556777765
Q ss_pred CCcEEEEEccCCeeeeeecccCCC-----CCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCe
Q 002266 166 IGTVIYWELQSGRELHNLKRVAPD-----IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPI 240 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~~~~~~~~-----~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I 240 (945)
+ ...+.|+.++.....+...... ......++..+.. +++.+|++- +..-.+.|. .|++.....-.....+
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p 231 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAP 231 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCch
Confidence 4 4888999876554333211111 0011122333333 345566543 334444444 3443321110123455
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC
Q 002266 241 CFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF 277 (945)
Q Consensus 241 ~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~ 277 (945)
..+++ ...||++.+. +.|.||++.+++.++.+..
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 56666 3457777765 5599999999998887654
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.023 Score=65.36 Aligned_cols=218 Identities=16% Similarity=0.203 Sum_probs=148.8
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc---CCcEEEEEcCCCeeee
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI---DHSVKLYKFPGGEFQT 97 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~---Dg~V~iwdl~~g~~~~ 97 (945)
..++.++.+..++.....+..|.+.|..+.........+. ....+++++++..+.++.. ++++.+.|-.++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4567888998777766567899999966553322222232 5678999999987777655 6889999988888777
Q ss_pred ecccCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeEEE-----EEecCCCCEEEEEEccCCCEEEEEeCC---Cc
Q 002266 98 NITRFTLPIRVLAFNKSGSMLAAAG-DDEGIKLINTIDGSIAR-----VLKGHKGPVTGLAFDPNSEYLASIDSI---GT 168 (945)
Q Consensus 98 ~l~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~~~~~-----~l~~h~~~V~~lafspdg~~Las~s~D---g~ 168 (945)
.......+ ..+++.|+|..+.++. .++.|.++|........ ... -...-..+.++|+|.++.+.... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCce
Confidence 75444445 8999999999777665 68889999976655443 122 22334678999999977665443 58
Q ss_pred EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEeecCC--CCCCeEEEEE
Q 002266 169 VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGL-KNDVVMYDRDTAEKLFSLRGD--HVQPICFLSW 245 (945)
Q Consensus 169 I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~-dg~I~vwD~~t~~~~~~~~~~--h~~~I~~l~f 245 (945)
+...|..++......... ... ....+..+|+|+.+.+... .+.+.+.|..+......+... ....+..+++
T Consensus 233 v~~id~~~~~v~~~~~~~-----~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~ 306 (381)
T COG3391 233 VLKIDTATGNVTATDLPV-----GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI 306 (381)
T ss_pred EEEEeCCCceEEEecccc-----ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence 999998887665542111 011 2345889999999988744 488999999887776665431 1123455555
Q ss_pred cCC
Q 002266 246 SPN 248 (945)
Q Consensus 246 Spd 248 (945)
.+.
T Consensus 307 ~~~ 309 (381)
T COG3391 307 SPL 309 (381)
T ss_pred eee
Confidence 543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.51 E-value=0.013 Score=65.55 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=123.9
Q ss_pred cEEEEEcCCCeeeeecccC-CCCEEEEE---Eec----CCCEEEEEEC---------C-CcEEEEEcCCC----eEEEEE
Q 002266 84 SVKLYKFPGGEFQTNITRF-TLPIRVLA---FNK----SGSMLAAAGD---------D-EGIKLINTIDG----SIARVL 141 (945)
Q Consensus 84 ~V~iwdl~~g~~~~~l~~~-~~~V~~l~---fsp----dg~~Lasgs~---------D-g~I~iwd~~~~----~~~~~l 141 (945)
.|++.|..+.+.+..+.-. ...+.+++ +.. ...+|++|+. . |.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777777666655443321 22334333 322 2467777753 2 88999999884 122221
Q ss_pred --ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCe-eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeE
Q 002266 142 --KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGR-ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDV 218 (945)
Q Consensus 142 --~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~-~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I 218 (945)
....++|++++-- ++. |+++. ++.|.+|++...+ ....-... ....+.++.. .++++++|.....+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~------~~~~i~sl~~--~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD------SPFYITSLSV--FKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-------BSSSEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec------ceEEEEEEec--cccEEEEEEcccCE
Confidence 2457889998876 444 44443 4799999998887 33222111 1123444444 36699999888888
Q ss_pred EEEECCC-CcEEEee-cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------Ce--e--eeeccCCCCeeEE-
Q 002266 219 VMYDRDT-AEKLFSL-RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGK-------KL--D--IDRQKFDDRICCM- 284 (945)
Q Consensus 219 ~vwD~~t-~~~~~~~-~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~-------~~--~--i~~~~~~~~V~~l- 284 (945)
.++..+. ...+..+ .......++++.|-++++.++++..+|.|.++.... +. . .........|+++
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 8775433 2222222 222345688888887778999999999999998753 11 2 2234456778888
Q ss_pred --EEecC--CC------EEEEEEcCCeEEEEec
Q 002266 285 --AWKPI--GN------ALAVIDVMGKYGVWES 307 (945)
Q Consensus 285 --a~spd--g~------~Las~s~DG~I~iWd~ 307 (945)
++.|. +. .++.++.+|.|.+.-.
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 55552 22 4888999999995543
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.33 E-value=0.11 Score=56.78 Aligned_cols=221 Identities=11% Similarity=0.098 Sum_probs=128.8
Q ss_pred cCCCEEEEEEcCCcEEEEEcCC-CeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE---------
Q 002266 71 PNSTCLASGSIDHSVKLYKFPG-GEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV--------- 140 (945)
Q Consensus 71 pdg~~Lasgs~Dg~V~iwdl~~-g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~--------- 140 (945)
..++.|+.|+.+| |.++++.. ........ ..+|..+...++-+.+++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999988 99999832 22222222 23499999999877777765 49999999875433221
Q ss_pred -----EecCCCCEEEEE--EccCC-CEEEEEeCCCcEEEEEccCC-----eeeeeecccCCCCCCCCCCceEEEEcCCCC
Q 002266 141 -----LKGHKGPVTGLA--FDPNS-EYLASIDSIGTVIYWELQSG-----RELHNLKRVAPDIGSDPSSMNVLSWSPDGE 207 (945)
Q Consensus 141 -----l~~h~~~V~~la--fspdg-~~Las~s~Dg~I~iwDl~t~-----~~i~~~~~~~~~~~~~~~~i~~l~~spdg~ 207 (945)
.......+..++ -...+ .+|+++ ....|.+|..... +..+.+. -+..+..++|. ++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--------lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--------LPDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE--------cCCCcEEEEEe--CC
Confidence 111223344444 11233 344444 4458998888664 2223332 13567889998 66
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEeecCCC-----------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeee-eec
Q 002266 208 TLAVPGLKNDVVMYDRDTAEKLFSLRGDH-----------VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDI-DRQ 275 (945)
Q Consensus 208 ~La~gs~dg~I~vwD~~t~~~~~~~~~~h-----------~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i-~~~ 275 (945)
.|++|. .....+.|+.++.....+.... ..++..+... ++.+|++- +..-.+.|....... ...
T Consensus 150 ~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i 225 (275)
T PF00780_consen 150 KICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTI 225 (275)
T ss_pred EEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEE
Confidence 788886 4558889998766543332111 1233333333 45666654 333344444332221 223
Q ss_pred cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 276 KFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 276 ~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
.....+.++++. ..+|+..+.++ |.||++..+...
T Consensus 226 ~W~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lv 260 (275)
T PF00780_consen 226 QWSSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELV 260 (275)
T ss_pred EcCCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEE
Confidence 445566777774 34777766655 999999887653
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.30 E-value=0.039 Score=63.34 Aligned_cols=229 Identities=15% Similarity=0.153 Sum_probs=128.1
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc---------------------c---------------------cc
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNL---------------------P---------------------KI 56 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~---------------------~---------------------~~ 56 (945)
.|+++.|.++...|+++. ..|.|.||........ . ..
T Consensus 3 ~v~~vs~a~~t~Elav~~-~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGL-ESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEE-TTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEc-cCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 589999999988899886 8899999853211000 0 01
Q ss_pred ccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee--ccc------CCCCEEEEEEec-----CC---CEEEE
Q 002266 57 LRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN--ITR------FTLPIRVLAFNK-----SG---SMLAA 120 (945)
Q Consensus 57 l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~--l~~------~~~~V~~l~fsp-----dg---~~Las 120 (945)
+....++|++++.|.=| +++.|..+|.+.|.|++....+.. +.. ....++++.|.- |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 12245789999998555 999999999999999987765543 222 234688888873 33 46899
Q ss_pred EECCCcEEEEEcCC---CeE----EEEEecCCCCEEEEE-EccC-----------------C---CEEEEEeCCCcEEEE
Q 002266 121 AGDDEGIKLINTID---GSI----ARVLKGHKGPVTGLA-FDPN-----------------S---EYLASIDSIGTVIYW 172 (945)
Q Consensus 121 gs~Dg~I~iwd~~~---~~~----~~~l~~h~~~V~~la-fspd-----------------g---~~Las~s~Dg~I~iw 172 (945)
|+..|.+.+|.+.- +.. ......+.++|..|. ++.+ | ..++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999997751 211 112224667776665 3221 0 123444456789999
Q ss_pred EccCCeeeeeecccCCCCCCCCCCceEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEeecCCC---CCCeEEEE
Q 002266 173 ELQSGRELHNLKRVAPDIGSDPSSMNVLSWS-----PDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH---VQPICFLS 244 (945)
Q Consensus 173 Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s-----pdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h---~~~I~~l~ 244 (945)
...+.+..+..... ......+++- ..+..|++-..+|.|++|.+-..+.+..+.... ...+...+
T Consensus 241 ~~~~~k~~~K~~~~-------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 241 KPPKSKGAHKSFDD-------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp -TT---EEEEE-SS--------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred eCCCCcccceeecc-------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 98877665543210 1112234442 356678888899999999999988887765411 12344456
Q ss_pred EcCCCCEEEEEE
Q 002266 245 WSPNGKYMATSS 256 (945)
Q Consensus 245 fSpdg~~Lasgs 256 (945)
++++|..++-.+
T Consensus 314 is~~Gdi~~~~g 325 (395)
T PF08596_consen 314 ISRNGDIFYWTG 325 (395)
T ss_dssp E-TTS-EEEE-S
T ss_pred ECCCCCEEEEeC
Confidence 677777665554
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.22 E-value=0.22 Score=57.83 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=128.3
Q ss_pred ceEEEEEecCCCEEEEE-EcCC----cEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCC-----------c
Q 002266 63 GVTALALSPNSTCLASG-SIDH----SVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDE-----------G 126 (945)
Q Consensus 63 ~V~~la~spdg~~Lasg-s~Dg----~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg-----------~ 126 (945)
.+..++++|+|++||.+ +..| .|+++|+.+|+.+........ ...+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467889999998865 3334 599999999977653221111 22399999998887775433 2
Q ss_pred EEEEEcCCCeE--EEEEecCCCC--EEEEEEccCCCEEEEEeCC----CcEEEEEccCC----eeeeeecccCCCCCCCC
Q 002266 127 IKLINTIDGSI--ARVLKGHKGP--VTGLAFDPNSEYLASIDSI----GTVIYWELQSG----RELHNLKRVAPDIGSDP 194 (945)
Q Consensus 127 I~iwd~~~~~~--~~~l~~h~~~--V~~lafspdg~~Las~s~D----g~I~iwDl~t~----~~i~~~~~~~~~~~~~~ 194 (945)
|+.|.+.+... ...+...... ...+..++++++|+..+.. ..+.+.++..+ .....+... ..
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~------~~ 277 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR------ED 277 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES------SS
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC------CC
Confidence 77888876542 2344443332 6788999999987764332 34777777664 122222211 01
Q ss_pred CCceEEEEcCCCCEEEEEe---CCCeEEEEECCCCcE---EEeecCCCCCCeEEEEEcCCCCEEEEE-ECCC--eEEEEE
Q 002266 195 SSMNVLSWSPDGETLAVPG---LKNDVVMYDRDTAEK---LFSLRGDHVQPICFLSWSPNGKYMATS-SLDR--QILIWD 265 (945)
Q Consensus 195 ~~i~~l~~spdg~~La~gs---~dg~I~vwD~~t~~~---~~~~~~~h~~~I~~l~fSpdg~~Lasg-s~Dg--~I~IWD 265 (945)
.....+... .+.+++... ..+.|...++..... ...+.. +...+.-..+...+.+|+.. ..++ .|++++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 112223333 333443332 245788888877652 223332 44433333444445555544 3443 688999
Q ss_pred CC-CCeeeeecc-CCCCeeEEEEecCCCEEEE--EE--cCCeEEEEecCCCC
Q 002266 266 VG-KKLDIDRQK-FDDRICCMAWKPIGNALAV--ID--VMGKYGVWESVVPS 311 (945)
Q Consensus 266 ~~-~~~~i~~~~-~~~~V~~la~spdg~~Las--~s--~DG~I~iWd~~~~~ 311 (945)
+. +........ -.+.|..+...++++.+.. .+ .-+++..||+..++
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99 444333322 2334566665666664333 22 23557777776554
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.22 E-value=0.0059 Score=74.63 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=97.7
Q ss_pred CEEEEE-ECCCcEEEEEcCCCeEEEEEecCCCC-EEEEEEcc-----CCCEEEEEeCCCcEEEEEccCCe-eeeeecccC
Q 002266 116 SMLAAA-GDDEGIKLINTIDGSIARVLKGHKGP-VTGLAFDP-----NSEYLASIDSIGTVIYWELQSGR-ELHNLKRVA 187 (945)
Q Consensus 116 ~~Lasg-s~Dg~I~iwd~~~~~~~~~l~~h~~~-V~~lafsp-----dg~~Las~s~Dg~I~iwDl~t~~-~i~~~~~~~ 187 (945)
++|+.- .....|+-.|++.|+++..+..|... |..++-.. ++...+.|-.+..+..||.|-.. .+.....
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~-- 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS-- 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc--
Confidence 343433 34578999999999999999987754 65554321 13345667778899999998643 1111111
Q ss_pred CCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002266 188 PDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 188 ~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~ 266 (945)
.........+|++-..+| +||+|+.+|.|++||.-..+....+++ ...+|..|..+.||++|++.+ +..|.++++
T Consensus 572 -k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 -KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111223445677766666 699999999999999643333333443 678999999999999988777 566777775
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.047 Score=61.16 Aligned_cols=211 Identities=15% Similarity=0.177 Sum_probs=120.4
Q ss_pred eEEEEcCCCCcccccccc-ccccceEEEEEec---C----CCEEEEEEc----------CCcEEEEEcCCC----eeeee
Q 002266 41 TISIHDPLLPSNLPKILR-HHRDGVTALALSP---N----STCLASGSI----------DHSVKLYKFPGG----EFQTN 98 (945)
Q Consensus 41 ~V~IWd~~~~~~~~~~l~-~h~~~V~~la~sp---d----g~~Lasgs~----------Dg~V~iwdl~~g----~~~~~ 98 (945)
.|++.|..+.... ..+. .....+.+++... + ..+|++|+. .|.|.++++... ..+..
T Consensus 3 ~i~l~d~~~~~~~-~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVL-DSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEE-EEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEE-EEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 5777776554322 2221 1233444444332 2 467777653 288999999884 12222
Q ss_pred c--ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe-EEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 99 I--TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS-IARVLK-GHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 99 l--~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~l~-~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
+ ....++|++++-. ++ .|+++. .+.|.+|++.... ....-. .....+.++... ++++++|+.-..+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 2347889998876 44 455443 5789999998877 443322 233466666655 668999998888888866
Q ss_pred cC-CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCC-------Cc-E---EEeecCCCCCCeEE
Q 002266 175 QS-GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDT-------AE-K---LFSLRGDHVQPICF 242 (945)
Q Consensus 175 ~t-~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t-------~~-~---~~~~~~~h~~~I~~ 242 (945)
.. ...+..+... .....++++.+-++++.++++..+|.+.++.... +. . ...+. ....|++
T Consensus 157 ~~~~~~l~~va~d-----~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~ 229 (321)
T PF03178_consen 157 DEENNKLILVARD-----YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNS 229 (321)
T ss_dssp ETTTE-EEEEEEE-----SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEE
T ss_pred EccCCEEEEEEec-----CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccce
Confidence 54 2323333221 1234577888886667999999999999998752 22 2 22222 3456777
Q ss_pred E---EEcC--CCC------EEEEEECCCeEEEE
Q 002266 243 L---SWSP--NGK------YMATSSLDRQILIW 264 (945)
Q Consensus 243 l---~fSp--dg~------~Lasgs~Dg~I~IW 264 (945)
+ ++.| .+. .++.++.+|.|.+.
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 7 4445 222 47888889988843
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.21 E-value=0.14 Score=57.65 Aligned_cols=221 Identities=11% Similarity=0.042 Sum_probs=110.7
Q ss_pred EEecCCCEEEEEEc-C--CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC
Q 002266 68 ALSPNSTCLASGSI-D--HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH 144 (945)
Q Consensus 68 a~spdg~~Lasgs~-D--g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h 144 (945)
+|.+||+.|+.++. + ..+.+.|+.+++..+.-.+.........++++++.++.......|+-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56789977766554 4 45777788888765443322222224667788888877767778999999998876667766
Q ss_pred CCCEEEEEEc--cCCCEEEEEeC---C-------------------CcEEEEEccCCeeeeeecccCCCCCCCCCCceEE
Q 002266 145 KGPVTGLAFD--PNSEYLASIDS---I-------------------GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVL 200 (945)
Q Consensus 145 ~~~V~~lafs--pdg~~Las~s~---D-------------------g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l 200 (945)
...+-...|. .++..++-.-. | ..|...|+.+|+....+.. ...+..+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~--------~~wlgH~ 193 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED--------TDWLGHV 193 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--------SS-EEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--------CccccCc
Confidence 6776656664 35555543211 1 2355556666654333321 2445678
Q ss_pred EEcC-CCCEEEEEeC------CCeEEEEECCCCcEEEeecC-CCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECC
Q 002266 201 SWSP-DGETLAVPGL------KNDVVMYDRDTAEKLFSLRG-DHVQPICFLSWSPNGKYMATSSL-----DRQILIWDVG 267 (945)
Q Consensus 201 ~~sp-dg~~La~gs~------dg~I~vwD~~t~~~~~~~~~-~h~~~I~~l~fSpdg~~Lasgs~-----Dg~I~IWD~~ 267 (945)
.|+| +...|+.|.. |..|.+.+... .....+.. .....+..=-|+|+|..|..-+. +..|.-+|+.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 9999 5566666543 23455555443 33333332 11223444469999987765332 3456777888
Q ss_pred CCeeeeeccCCCCeeEEEEecCCCEEEEEEc
Q 002266 268 KKLDIDRQKFDDRICCMAWKPIGNALAVIDV 298 (945)
Q Consensus 268 ~~~~i~~~~~~~~V~~la~spdg~~Las~s~ 298 (945)
++........+ ....+--+++|++++-=+.
T Consensus 273 t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 273 TGERRRLMEMP-WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp T--EEEEEEE--SEEEEEE-TTSSEEEEEE-
T ss_pred CCCceEEEeCC-ceeeeEEcCCCCEEEecCC
Confidence 77554332222 3445555778876655333
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0015 Score=75.20 Aligned_cols=91 Identities=20% Similarity=0.369 Sum_probs=76.4
Q ss_pred CCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeeee
Q 002266 195 SSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPIC-FLSWSPNGKYMATSSLDRQILIWDVGKKLDID 273 (945)
Q Consensus 195 ~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~-~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~ 273 (945)
..+..+.|+|.-..||+++.+|.|.+..+. ++.+.+++. +...++ +++|.|||++||.|-.||+|++-|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 456789999999999999999999999988 999999986 555666 99999999999999999999999999988776
Q ss_pred e--ccCCCCeeEEEEe
Q 002266 274 R--QKFDDRICCMAWK 287 (945)
Q Consensus 274 ~--~~~~~~V~~la~s 287 (945)
. ......|.++-|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 6 3334555655554
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.18 E-value=0.034 Score=67.10 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=103.4
Q ss_pred cceEEEEEecCCCEEEEEE------cCC--cEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCC--------
Q 002266 62 DGVTALALSPNSTCLASGS------IDH--SVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDE-------- 125 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs------~Dg--~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg-------- 125 (945)
..+...+++|+|+.++... .|. .|.+++. .+.. ..+... ...+.-.|+|+|..|++..+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999887765 243 4555554 2332 333322 2378889999999888775432
Q ss_pred ----cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE---EccCCeeeeeecccCCCCCCCCCCce
Q 002266 126 ----GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW---ELQSGRELHNLKRVAPDIGSDPSSMN 198 (945)
Q Consensus 126 ----~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw---Dl~t~~~i~~~~~~~~~~~~~~~~i~ 198 (945)
.+.+.++..+.... ...+.|..+.|+|||..++... +|.|++- ....|. ..+.............+.
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccc
Confidence 23333333332211 2356799999999999888766 4777773 323333 222111111111122346
Q ss_pred EEEEcCCCCEEEEEeCCCe--EEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 002266 199 VLSWSPDGETLAVPGLKND--VVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQI 261 (945)
Q Consensus 199 ~l~~spdg~~La~gs~dg~--I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I 261 (945)
.+.|..++.++ ++..++. ++..++..........+....++..++=+++ .|+....+|.+
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 78999988854 5555444 4444444322221111123456777776653 34455555633
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.17 E-value=0.041 Score=66.40 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=107.7
Q ss_pred CCEEEEEEecCCCEEEEEE------CCC--cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC-CcEEEEEc
Q 002266 104 LPIRVLAFNKSGSMLAAAG------DDE--GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI-GTVIYWEL 174 (945)
Q Consensus 104 ~~V~~l~fspdg~~Lasgs------~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D-g~I~iwDl 174 (945)
..+...+++|+|..++... .|. .|.+++. .+.. ..+..- .....-.|+|+|..|++.... ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577899999999988776 233 4556564 2322 333222 247889999999988877543 22333332
Q ss_pred cCCeeeeeecccCCCCC-CCCCCceEEEEcCCCCEEEEEeCCCeEEE---EECCCCcE-E---EeecCCCCCCeEEEEEc
Q 002266 175 QSGRELHNLKRVAPDIG-SDPSSMNVLSWSPDGETLAVPGLKNDVVM---YDRDTAEK-L---FSLRGDHVQPICFLSWS 246 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~-~~~~~i~~l~~spdg~~La~gs~dg~I~v---wD~~t~~~-~---~~~~~~h~~~I~~l~fS 246 (945)
.....+..+........ .....|..+.|+|||..++... ++.|++ -....+.. + ..+.......+.++.|.
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 22222221111100000 1235689999999999998876 577777 45445541 1 11222133346889999
Q ss_pred CCCCEEEEEECCCeEEEEE--CCCCeeee--eccCCCCeeEEEEecCCCEEEEEEcCCeEE
Q 002266 247 PNGKYMATSSLDRQILIWD--VGKKLDID--RQKFDDRICCMAWKPIGNALAVIDVMGKYG 303 (945)
Q Consensus 247 pdg~~Lasgs~Dg~I~IWD--~~~~~~i~--~~~~~~~V~~la~spdg~~Las~s~DG~I~ 303 (945)
.++.++ .+..++...+|. +....... .......+..++=++. .|+..+.+|.+.
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 999855 444444444554 44322211 1122456667776653 566666666433
No 370
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.97 E-value=0.82 Score=56.13 Aligned_cols=286 Identities=11% Similarity=0.060 Sum_probs=153.4
Q ss_pred CCCCCEEEEEECCC--CCE---EEEEEcCCCeEEEE-cCCCCcccccc-ccc--cccceEEEEEecCCCEEEEEEcCCcE
Q 002266 15 GNAASFCSILWDQQ--AHH---LVTASSSETTISIH-DPLLPSNLPKI-LRH--HRDGVTALALSPNSTCLASGSIDHSV 85 (945)
Q Consensus 15 gh~~~V~svafspd--g~~---L~t~g~~dg~V~IW-d~~~~~~~~~~-l~~--h~~~V~~la~spdg~~Lasgs~Dg~V 85 (945)
.-...|.|+.++|- ++. +++.|..+..+.+- -.......... +.. -...|.-..+-.|..+|.++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 34567999999975 333 44444344444332 22221111111 111 12345555666678899999999998
Q ss_pred EEEEcC--CCeeeeec--ccCCCCEEEEEEecCCCEEEEEECCCc-----------------------------------
Q 002266 86 KLYKFP--GGEFQTNI--TRFTLPIRVLAFNKSGSMLAAAGDDEG----------------------------------- 126 (945)
Q Consensus 86 ~iwdl~--~g~~~~~l--~~~~~~V~~l~fspdg~~Lasgs~Dg~----------------------------------- 126 (945)
.-|-+. +|+....- .-...|+.--.|+..++.-+.+..|.-
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 776543 44322111 112333333333333222222222222
Q ss_pred -------EEEEEcCCCe--EEEEEecCCCCEEEEEEccCCCEEEEEeCC--------------CcEEEEEccCCeeeeee
Q 002266 127 -------IKLINTIDGS--IARVLKGHKGPVTGLAFDPNSEYLASIDSI--------------GTVIYWELQSGRELHNL 183 (945)
Q Consensus 127 -------I~iwd~~~~~--~~~~l~~h~~~V~~lafspdg~~Las~s~D--------------g~I~iwDl~t~~~i~~~ 183 (945)
+++.-+..-. .++++. -......+++.+....+++.+.- ..++++|-.+.+.++..
T Consensus 688 ~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 2222221110 111211 22445667777644444444321 13666666665554433
Q ss_pred cccCCCCCCCCCCceEEEEcCC-CCEEEEEeC----------CCeEEEEECCCCcEEEeecC-CCCCCeEEEEEcCCCCE
Q 002266 184 KRVAPDIGSDPSSMNVLSWSPD-GETLAVPGL----------KNDVVMYDRDTAEKLFSLRG-DHVQPICFLSWSPNGKY 251 (945)
Q Consensus 184 ~~~~~~~~~~~~~i~~l~~spd-g~~La~gs~----------dg~I~vwD~~t~~~~~~~~~-~h~~~I~~l~fSpdg~~ 251 (945)
+.... .....+.++.|..| +.++++|+. .|.|.+|.......+..+.. .-.+.+.++.. -+|++
T Consensus 767 ef~~~---E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkl 842 (1096)
T KOG1897|consen 767 EFERN---ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKL 842 (1096)
T ss_pred ccccc---ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeE
Confidence 22111 11133555668876 788888763 57888888776443333221 12334444431 27888
Q ss_pred EEEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 252 MATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
||.- ...|++|++.+.+.+.. ..+..++..+...-.|..+++|+.-+.+.+...
T Consensus 843 lA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 843 LAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred EEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 8776 46899999998866555 556778999999999999999999988877654
No 371
>PRK10115 protease 2; Provisional
Probab=96.97 E-value=1.6 Score=54.06 Aligned_cols=242 Identities=9% Similarity=0.017 Sum_probs=121.3
Q ss_pred CCEEEEEECCCCCEEEEEEcCC----CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC------CcEEE
Q 002266 18 ASFCSILWDQQAHHLVTASSSE----TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID------HSVKL 87 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~d----g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D------g~V~i 87 (945)
-.+..+.|||||++|+.+...+ ..|++.|+.++..+...+..-. ..++|++|++.|+.+..+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4577789999999999875333 3677888876643333333311 469999999877665432 36788
Q ss_pred EEcCCC--eeeeecccCCCCEE-EEEEecCCCEEEEEEC---CCcEEEEEcC--CCeEEEEEecCCCCEEEEEEccCCCE
Q 002266 88 YKFPGG--EFQTNITRFTLPIR-VLAFNKSGSMLAAAGD---DEGIKLINTI--DGSIARVLKGHKGPVTGLAFDPNSEY 159 (945)
Q Consensus 88 wdl~~g--~~~~~l~~~~~~V~-~l~fspdg~~Lasgs~---Dg~I~iwd~~--~~~~~~~l~~h~~~V~~lafspdg~~ 159 (945)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.. ++.....+....+....+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 888877 32233333333333 2333448887766544 3468888843 3332222222222223222 323333
Q ss_pred EEEEeCC---CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe--EEEEECCCCcEEEeecC
Q 002266 160 LASIDSI---GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND--VVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 160 Las~s~D---g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~--I~vwD~~t~~~~~~~~~ 234 (945)
++....+ ..|...++........+. +. .....+..+.+. .+.++++...++. +++++..+. .+..+.-
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~---~~--~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELI---PP--RENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEE---CC--CCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 3333222 234334443211111111 11 112356667776 2334444444554 455555433 3333331
Q ss_pred CCCCCeEEEEEc--CCC-CEEEEEEC---CCeEEEEECCCCe
Q 002266 235 DHVQPICFLSWS--PNG-KYMATSSL---DRQILIWDVGKKL 270 (945)
Q Consensus 235 ~h~~~I~~l~fS--pdg-~~Lasgs~---Dg~I~IWD~~~~~ 270 (945)
.....+..+.++ +++ .++++.+. -+.++.+|+.+++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 122223334444 333 34444432 4678888987764
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.071 Score=56.44 Aligned_cols=237 Identities=14% Similarity=0.135 Sum_probs=127.5
Q ss_pred EEECCCCCEEEEEEcCCC-eEEEEcCCCCccccccccccccc--eEEEEEecCCCEEEEEEcC-----CcEEEEEcCCC-
Q 002266 23 ILWDQQAHHLVTASSSET-TISIHDPLLPSNLPKILRHHRDG--VTALALSPNSTCLASGSID-----HSVKLYKFPGG- 93 (945)
Q Consensus 23 vafspdg~~L~t~g~~dg-~V~IWd~~~~~~~~~~l~~h~~~--V~~la~spdg~~Lasgs~D-----g~V~iwdl~~g- 93 (945)
|+|+|.-..-++..-.-| ...++|..... .+.++...++. --.=.|||||.+|+..-.| |.|-|||...+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~-~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQ-EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCc-CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 456665443332221333 33566765542 23222211111 0123589999999875433 78999998754
Q ss_pred eeeeecccCCCCEEEEEEecCCCEEEEEECC------------------CcEEEEEcCCCeEEEE--Ee--cCCCCEEEE
Q 002266 94 EFQTNITRFTLPIRVLAFNKSGSMLAAAGDD------------------EGIKLINTIDGSIARV--LK--GHKGPVTGL 151 (945)
Q Consensus 94 ~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D------------------g~I~iwd~~~~~~~~~--l~--~h~~~V~~l 151 (945)
+.+..+..|.-....+.|.+||+.++++... -.+.+.|..+|..+.. +. .+.-.|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 3455677777778899999999999887431 1244445445544322 22 345678889
Q ss_pred EEccCCCEEEEEeCCCc-----EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 002266 152 AFDPNSEYLASIDSIGT-----VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG-LKNDVVMYDRDT 225 (945)
Q Consensus 152 afspdg~~Las~s~Dg~-----I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs-~dg~I~vwD~~t 225 (945)
+..++|..++.+-..|. -.+=-...++.+.-+.........-...+-+++.+.+..+++..+ ..+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 98888887665543331 111111222222222111100001113355677776555555444 455688999999
Q ss_pred CcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002266 226 AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265 (945)
Q Consensus 226 ~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD 265 (945)
+..+....- .....++ +...-++..+.+|.+.++.
T Consensus 312 G~vv~~a~l---~daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 GAVVSEAAL---PDAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CcEEecccc---cccccce--eccCceEEecCCceEEecc
Confidence 987755432 1122222 2333455556678888773
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.005 Score=63.21 Aligned_cols=140 Identities=9% Similarity=0.003 Sum_probs=81.0
Q ss_pred EEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCC
Q 002266 160 LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQP 239 (945)
Q Consensus 160 Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~ 239 (945)
|...+.+|.|+-++++..+....-.. .+... .....-+..+++|+.+|.|++|..................
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~------~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER------FIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh------hhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 44456788888887765432211111 11111 1112235679999999999999887322211111111222
Q ss_pred eEE-EEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC-C-CCeeEEEEecCCCEEEEE--EcCCeEEEEecC
Q 002266 240 ICF-LSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF-D-DRICCMAWKPIGNALAVI--DVMGKYGVWESV 308 (945)
Q Consensus 240 I~~-l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~-~~V~~la~spdg~~Las~--s~DG~I~iWd~~ 308 (945)
|.+ +.--.++.+.++++.||.|+.|++...+.+....+ . .++..+..+..++.|+++ +.|..++.|++.
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 322 22233566888999999999999999888877543 3 345555555555566655 666666666654
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.016 Score=65.86 Aligned_cols=148 Identities=15% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCCEE-EEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEccCCeeeeeecc
Q 002266 114 SGSML-AAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE-------YLASIDSIGTVIYWELQSGRELHNLKR 185 (945)
Q Consensus 114 dg~~L-asgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~-------~Las~s~Dg~I~iwDl~t~~~i~~~~~ 185 (945)
+.++| ..+.....++-.|++.|+.+..+.-+.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-...- .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 33443 4445556789999999999999987766 77778888654 2345667888999998743220 1110
Q ss_pred cCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002266 186 VAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265 (945)
Q Consensus 186 ~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD 265 (945)
.............|.+-..+ -+|++|+.+|.|++||. .+..-.+...+...+|..+..+.+|++|++.+ +..|.+.+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 00000011122344444444 47999999999999998 45544443333788999999999999988776 55666666
Q ss_pred C
Q 002266 266 V 266 (945)
Q Consensus 266 ~ 266 (945)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 5
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0061 Score=70.48 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCc-eEEEEcCCCCEEEEEeCCCeEEEEEC
Q 002266 145 KGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSM-NVLSWSPDGETLAVPGLKNDVVMYDR 223 (945)
Q Consensus 145 ~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i-~~l~~spdg~~La~gs~dg~I~vwD~ 223 (945)
...|.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++..+ ...+ .+++|.|||+.|++|-.||+|++.|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-------~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-------GENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-------CCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3567889999999999999999999999887 5555665432 2233 48999999999999999999999999
Q ss_pred CCCcEEEeecCCCCCCeEEEEEcC
Q 002266 224 DTAEKLFSLRGDHVQPICFLSWSP 247 (945)
Q Consensus 224 ~t~~~~~~~~~~h~~~I~~l~fSp 247 (945)
.++..+..+.-.....|.++-|++
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCCceeccccccccchheeeccc
Confidence 999888775444567888888874
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.73 E-value=0.31 Score=52.09 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=116.4
Q ss_pred eEEEEEecCCCEEEEEEcCC--cEEEEEcCCCeeeeecccC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 002266 64 VTALALSPNSTCLASGSIDH--SVKLYKFPGGEFQTNITRF-TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV 140 (945)
Q Consensus 64 V~~la~spdg~~Lasgs~Dg--~V~iwdl~~g~~~~~l~~~-~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 140 (945)
...+.|..+|.++-+.+.-| .|+.+|+.+|+......-. ..---.++.. +++.....=.++...+||..+-+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 45788877887777777655 7999999999866443311 1112234443 334444455688899999999888887
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEE
Q 002266 141 LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVM 220 (945)
Q Consensus 141 l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~v 220 (945)
+.- .+.=+.++ .+++.|+.+.....++++|..+.+....+.... .+..-..++.+.|. +|...|-.-....|..
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--NGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--TTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE--CCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 763 34556777 467778888777899999988877766665321 11112346677776 6777676667888999
Q ss_pred EECCCCcEEEeecC-----------C---CCCCeEEEEEcCCCC-EEEEE
Q 002266 221 YDRDTAEKLFSLRG-----------D---HVQPICFLSWSPNGK-YMATS 255 (945)
Q Consensus 221 wD~~t~~~~~~~~~-----------~---h~~~I~~l~fSpdg~-~Lasg 255 (945)
.|..+|+.+..+.- . ...-.+.++|.|.+. +++||
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999988765421 0 134578999998655 45554
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.70 E-value=1.4 Score=48.68 Aligned_cols=193 Identities=10% Similarity=0.096 Sum_probs=93.7
Q ss_pred eEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee-cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEe
Q 002266 64 VTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN-ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLK 142 (945)
Q Consensus 64 V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~-l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~ 142 (945)
...+....++..++ ++..|.|+.- .+.|+.-.. .......+..+..+++|++++++.......-||.-...-...-+
T Consensus 106 ~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 106 PFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-
T ss_pred eeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc
Confidence 33444444443333 3455544332 233433222 33445778899999999988888655555667754332233333
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEE
Q 002266 143 GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 143 ~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD 222 (945)
.....|..|.|.|++.+.+.+ ..|.|+.=+... ....+.............+..++|.+++...++|+ .|.+ +..
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S 258 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVS 258 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEE
T ss_pred CccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEe
Confidence 456889999999998766654 788888776221 11222221112222334578899999988888765 4533 344
Q ss_pred CCCCcEEEeecC--CCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002266 223 RDTAEKLFSLRG--DHVQPICFLSWSPNGKYMATSSLDRQILIW 264 (945)
Q Consensus 223 ~~t~~~~~~~~~--~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IW 264 (945)
.+.++.-..... .-...++.+.|.+..+-++.| .+|.|.-|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 444443222221 245678889998765555555 57877655
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.24 Score=53.12 Aligned_cols=171 Identities=14% Similarity=0.192 Sum_probs=113.7
Q ss_pred cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 002266 99 ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH-KGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG 177 (945)
Q Consensus 99 l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h-~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~ 177 (945)
+.+....+.++.|+|+.+.|++......-.|+=...|..+.++.-. -...-.|.|..+|.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455666999999999999998888887777766688888776421 223456788888888888888899999888766
Q ss_pred eeeeeeccc---CCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeec--CCC-------CCCeEEEEE
Q 002266 178 RELHNLKRV---APDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLR--GDH-------VQPICFLSW 245 (945)
Q Consensus 178 ~~i~~~~~~---~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~--~~h-------~~~I~~l~f 245 (945)
..+...... ...........-.++|.|....|+++-...-+.||............ ..+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 433332221 11111224556789999988888887777767777665332111111 001 235677888
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCC
Q 002266 246 SP-NGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 246 Sp-dg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.+ .+.+|+-+..++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 87 5667777777888887776654
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.66 E-value=0.41 Score=54.41 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=107.7
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCCcccccc---ccc---cc----cceEEEEEecCCCEEEEEEc------CCcEEEEEcC
Q 002266 28 QAHHLVTASSSETTISIHDPLLPSNLPKI---LRH---HR----DGVTALALSPNSTCLASGSI------DHSVKLYKFP 91 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~~~~~~~---l~~---h~----~~V~~la~spdg~~Lasgs~------Dg~V~iwdl~ 91 (945)
+.++|++.|-..+.|.|.|+.+....++. +.. +. .....+..-|+|..++++-. -|-+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 56788888888999999998754433322 221 11 22233444578988888632 2567888877
Q ss_pred CCeeeeecccC---CCCEEEEEEecCCCEEEEEEC--------------------CCcEEEEEcCCCeEEEEEecCC--C
Q 002266 92 GGEFQTNITRF---TLPIRVLAFNKSGSMLAAAGD--------------------DEGIKLINTIDGSIARVLKGHK--G 146 (945)
Q Consensus 92 ~g~~~~~l~~~---~~~V~~l~fspdg~~Lasgs~--------------------Dg~I~iwd~~~~~~~~~l~~h~--~ 146 (945)
+.+........ ..--.++-|.|..+.+++... ...+.+||+.+.+.++++.-.. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 66666555432 223467888888888888532 3579999999999998887433 2
Q ss_pred CEEEEEEccC--CCEEEE-EeCCCcEEEEEc-cCCe----eeeeecccC----------CCCCCCCCCceEEEEcCCCCE
Q 002266 147 PVTGLAFDPN--SEYLAS-IDSIGTVIYWEL-QSGR----ELHNLKRVA----------PDIGSDPSSMNVLSWSPDGET 208 (945)
Q Consensus 147 ~V~~lafspd--g~~Las-~s~Dg~I~iwDl-~t~~----~i~~~~~~~----------~~~~~~~~~i~~l~~spdg~~ 208 (945)
....|.|..+ ..+=++ +.-.+.|..|-- ..+. .+..+.... ..+..-+.-++.|..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777554 444333 333444554433 3332 122221110 000111345788999999999
Q ss_pred EEEEeC-CCeEEEEECCCCc---EEEeec-CC--------------CCCCeEEEEEcCCCCEEEEEE
Q 002266 209 LAVPGL-KNDVVMYDRDTAE---KLFSLR-GD--------------HVQPICFLSWSPNGKYMATSS 256 (945)
Q Consensus 209 La~gs~-dg~I~vwD~~t~~---~~~~~~-~~--------------h~~~I~~l~fSpdg~~Lasgs 256 (945)
|.+.+. .|.|+.||+.... .+.++. +. -.+...-+..|-||+.|+..+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 987654 8999999998643 222221 10 112235577888888776654
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.66 E-value=2.4 Score=52.32 Aligned_cols=292 Identities=13% Similarity=0.084 Sum_probs=149.8
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecC--C----CEEEEEEcCCcEEEEE-c
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPN--S----TCLASGSIDHSVKLYK-F 90 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spd--g----~~Lasgs~Dg~V~iwd-l 90 (945)
+.++....+.+...++.++ .++.+...++.........-......|.|+.++|- + ++++.|..+..+.+.- +
T Consensus 488 ~~~ti~~~~~n~sqVvvA~-~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAG-GGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CceEEEEEeecceEEEEec-CccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 4455555555555666665 44555555544332111111223568999999983 2 3788888776655443 3
Q ss_pred CCCeeeeec----ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEc--CCCeEEEEE--ecCCCCEEEEEEccCCCEEEE
Q 002266 91 PGGEFQTNI----TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT--IDGSIARVL--KGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 91 ~~g~~~~~l----~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~--~~~~~~~~l--~~h~~~V~~lafspdg~~Las 162 (945)
++....... ...+..|.-..|-.|..+|.++..||.+.-|.+ .++.....- .-...++.--.|+..+..-+.
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE
Confidence 443332221 112334555666667899999999998876544 444321111 112233433344443333333
Q ss_pred EeCCCcEEEEEccCCeee---------------------------------eeecc---cCCCCCCCCCCceEEEEcCCC
Q 002266 163 IDSIGTVIYWELQSGREL---------------------------------HNLKR---VAPDIGSDPSSMNVLSWSPDG 206 (945)
Q Consensus 163 ~s~Dg~I~iwDl~t~~~i---------------------------------~~~~~---~~~~~~~~~~~i~~l~~spdg 206 (945)
+..|.-..+|.-+..-.. .++.. .....-.-......+++.+..
T Consensus 647 a~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s 726 (1096)
T KOG1897|consen 647 ALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS 726 (1096)
T ss_pred EeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccc
Confidence 333333333322111000 00000 000000112345667777755
Q ss_pred CEEEEEeCC--------------CeEEEEECCCCcEEEeecCCCCC---CeEEEEEcCC-CCEEEEEEC----------C
Q 002266 207 ETLAVPGLK--------------NDVVMYDRDTAEKLFSLRGDHVQ---PICFLSWSPN-GKYMATSSL----------D 258 (945)
Q Consensus 207 ~~La~gs~d--------------g~I~vwD~~t~~~~~~~~~~h~~---~I~~l~fSpd-g~~Lasgs~----------D 258 (945)
..+.+.+.. ..++++|-.+.+.+....-.... .|.++.|..| +.+++.|+. .
T Consensus 727 l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~ 806 (1096)
T KOG1897|consen 727 LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVN 806 (1096)
T ss_pred eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCccc
Confidence 555554321 24778888887766554332222 4555568777 778888762 4
Q ss_pred CeEEEEECCCCeeee---eccCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCCCCCC
Q 002266 259 RQILIWDVGKKLDID---RQKFDDRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 259 g~I~IWD~~~~~~i~---~~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
|.|.||.+.....+. .....+.+.++.-- +|++||.. ...|++|+......+
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eL 861 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTEREL 861 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEcccccee
Confidence 889999887633322 23345566655432 45566554 557899888766443
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.54 E-value=0.1 Score=64.05 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=95.1
Q ss_pred CCEEEEE-EcCCcEEEEEcCCCeeeeecccCCCC-EEEEEEec-----CCCEEEEEECCCcEEEEEcCCCe-EEEEEe--
Q 002266 73 STCLASG-SIDHSVKLYKFPGGEFQTNITRFTLP-IRVLAFNK-----SGSMLAAAGDDEGIKLINTIDGS-IARVLK-- 142 (945)
Q Consensus 73 g~~Lasg-s~Dg~V~iwdl~~g~~~~~l~~~~~~-V~~l~fsp-----dg~~Lasgs~Dg~I~iwd~~~~~-~~~~l~-- 142 (945)
.++|+.. .....|+-.|+..|+.+.....+... |..++=.. .....++|-.+..+..||.+-.. .+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999888766543 55543221 23346777788899999998642 221111
Q ss_pred --cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEE
Q 002266 143 --GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVM 220 (945)
Q Consensus 143 --~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~v 220 (945)
.......|++-+.+| +||+|+.+|.|++||- .+.. -+.. +.+-..+|..+..+.||++|++.+ +..|.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~---AKT~---lp~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR---AKTA---LPGLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchh---hhhc---CCCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 234557788777666 6899999999999993 3321 1111 223457899999999999998876 667777
Q ss_pred EEC
Q 002266 221 YDR 223 (945)
Q Consensus 221 wD~ 223 (945)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.50 E-value=0.9 Score=53.01 Aligned_cols=148 Identities=10% Similarity=0.157 Sum_probs=87.4
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecC----CCEEEEEEcCCcEEEEEcCC--
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPN----STCLASGSIDHSVKLYKFPG-- 92 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spd----g~~Lasgs~Dg~V~iwdl~~-- 92 (945)
+|..++|. ||+.++.+. +.+.+-+-.-.-. ..-+.-..|..++|.|- ...|++......|.||.+.-
T Consensus 21 PvhGlaWT-DGkqVvLT~-----L~l~~gE~kfGds-~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTD-----LQLHNGEPKFGDS-KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEec-CCCEEEEEe-----eeeeCCccccCCc-cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 47889998 677666553 3333322111111 12233466899999983 32444446678899999752
Q ss_pred ---Ceeeee----cc-cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-C-eEEEEEecCCCCEEEEEEccCCCEEEE
Q 002266 93 ---GEFQTN----IT-RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID-G-SIARVLKGHKGPVTGLAFDPNSEYLAS 162 (945)
Q Consensus 93 ---g~~~~~----l~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~-~~~~~l~~h~~~V~~lafspdg~~Las 162 (945)
++.... +. .+.--...+.|+|....|++-.....-.++++.. + .....+ ...+.|.|.+|.+||+.|++
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEE
Confidence 111111 11 1111234678999988888877665545556543 2 233334 45688999999999998876
Q ss_pred EeC-CCcEEEEEc
Q 002266 163 IDS-IGTVIYWEL 174 (945)
Q Consensus 163 ~s~-Dg~I~iwDl 174 (945)
+-. .=.-+|||-
T Consensus 173 AvGSsLHSyiWd~ 185 (671)
T PF15390_consen 173 AVGSSLHSYIWDS 185 (671)
T ss_pred EeCCeEEEEEecC
Confidence 643 234677774
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.42 E-value=0.17 Score=46.61 Aligned_cols=100 Identities=28% Similarity=0.243 Sum_probs=68.5
Q ss_pred eEEEEEec---CC-CEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE
Q 002266 64 VTALALSP---NS-TCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR 139 (945)
Q Consensus 64 V~~la~sp---dg-~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 139 (945)
|++|++.. || +.|++|+.|..|++|+ ..+.+..+. ....|.+++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 66777765 33 6899999999999998 345555555 4566777776655 67999999999999975 33344
Q ss_pred EEecCCCCEEEEEEcc-CC---CEEEEEeCCCcEE
Q 002266 140 VLKGHKGPVTGLAFDP-NS---EYLASIDSIGTVI 170 (945)
Q Consensus 140 ~l~~h~~~V~~lafsp-dg---~~Las~s~Dg~I~ 170 (945)
..+.. ..+.++.+.. ++ .-|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44433 3356665543 33 2688888888764
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.62 Score=50.05 Aligned_cols=204 Identities=12% Similarity=0.087 Sum_probs=123.6
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccc-cccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeee
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNL-PKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~-~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~ 98 (945)
+.-++|-+.+.....-+... ..+|...-.... .+.+.+-...|.++.|+|+.+.|++......-.|+=...|+.+..
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 44445555554443333233 455554332211 122344455699999999999888887777777776678888876
Q ss_pred ccc-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEE-------Ee--cC-CCCEEEEEEccCCCEEEEEeCCC
Q 002266 99 ITR-FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARV-------LK--GH-KGPVTGLAFDPNSEYLASIDSIG 167 (945)
Q Consensus 99 l~~-~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~-------l~--~h-~~~V~~lafspdg~~Las~s~Dg 167 (945)
+.- .-.....|.+..+|.+.++--.++.+.++.+.....+.. +. .+ ....-.++|+|....|+.+-.-.
T Consensus 123 iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~ 202 (316)
T COG3204 123 IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN 202 (316)
T ss_pred ecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC
Confidence 542 123445678888888877777788888887765432211 11 12 45678999999998888887777
Q ss_pred cEEEEEccCCeeeeee---cccCCCCCCCCCCceEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 002266 168 TVIYWELQSGRELHNL---KRVAPDIGSDPSSMNVLSWSP-DGETLAVPGLKNDVVMYDRDT 225 (945)
Q Consensus 168 ~I~iwDl~t~~~i~~~---~~~~~~~~~~~~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t 225 (945)
-+.||.+......... ..+......--..+..+.|++ .+.+++.+..++.+.-.|+..
T Consensus 203 P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 203 PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 7777766533211111 000000000113456788887 566677777778888888763
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.34 E-value=0.34 Score=55.66 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=58.5
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEE---EcCCCCc----ccccccc---ccc--cceEEEEEec-----------CCCEEE
Q 002266 21 CSILWDQQAHHLVTASSSETTISI---HDPLLPS----NLPKILR---HHR--DGVTALALSP-----------NSTCLA 77 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~I---Wd~~~~~----~~~~~l~---~h~--~~V~~la~sp-----------dg~~La 77 (945)
+.++.+|+|+.|+.+. .+..+.+ |+..... ....... .+. ..|+++.|-| |...++
T Consensus 5 ~~isls~~~d~laiA~-~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~ 83 (415)
T PF14655_consen 5 CSISLSPDGDLLAIAR-GQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA 83 (415)
T ss_pred ceEEecCCCCEEEEEc-CCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence 3567899999999986 4444443 5432211 1111111 111 4677776654 357889
Q ss_pred EEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEec
Q 002266 78 SGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNK 113 (945)
Q Consensus 78 sgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fsp 113 (945)
+|..+|.|++|.- +|.++..-.-|..+|..|.+..
T Consensus 84 VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 84 VGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 9999999999985 6766655556788998888754
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.33 E-value=1.4 Score=49.64 Aligned_cols=240 Identities=19% Similarity=0.212 Sum_probs=119.4
Q ss_pred CEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCc-c----ccccccccccceEEEEEecC----CCEEEEEEcC-------
Q 002266 19 SFCSILWDQQAHHLVTASSSETTISIHDPLLPS-N----LPKILRHHRDGVTALALSPN----STCLASGSID------- 82 (945)
Q Consensus 19 ~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~-~----~~~~l~~h~~~V~~la~spd----g~~Lasgs~D------- 82 (945)
.-++|+|.|+|+.+++- ..|.|++++..... . ...+..........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e--~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE--RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEEE--TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEEe--CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 35789999999877754 69999999832221 1 11223344567899999994 4333333321
Q ss_pred -CcEEEEEcCCC--e------eeeeccc---CCCCEEEEEEecCCCEEEEEECCC-------------cEEEEEcCCCeE
Q 002266 83 -HSVKLYKFPGG--E------FQTNITR---FTLPIRVLAFNKSGSMLAAAGDDE-------------GIKLINTIDGSI 137 (945)
Q Consensus 83 -g~V~iwdl~~g--~------~~~~l~~---~~~~V~~l~fspdg~~Lasgs~Dg-------------~I~iwd~~~~~~ 137 (945)
..|.-|.+..+ . .+..+.. .......|.|.|+|.+.++.++.+ .|.-++.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 24555554433 1 1111121 234567799999997766665433 23333332 110
Q ss_pred -------------EEE-EecCCCCEEEEEEccC-CCEEEEE-eCCCcEEEEEccCCeee----ee---------eccc--
Q 002266 138 -------------ARV-LKGHKGPVTGLAFDPN-SEYLASI-DSIGTVIYWELQSGREL----HN---------LKRV-- 186 (945)
Q Consensus 138 -------------~~~-l~~h~~~V~~lafspd-g~~Las~-s~Dg~I~iwDl~t~~~i----~~---------~~~~-- 186 (945)
... -.++. ....++|+|. |.++++= +.++.=.|.-+..+... .. +...
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 001 12232 2467999998 6544432 23333333333333210 00 0000
Q ss_pred -----CCCC-CCCCCCceEEEEcC-------CCCEEEEEeCCCeEEEEECCCCcEE---EeecCCCCCCeEEEEEcCCCC
Q 002266 187 -----APDI-GSDPSSMNVLSWSP-------DGETLAVPGLKNDVVMYDRDTAEKL---FSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 187 -----~~~~-~~~~~~i~~l~~sp-------dg~~La~gs~dg~I~vwD~~t~~~~---~~~~~~h~~~I~~l~fSpdg~ 250 (945)
.+.. ..+...+..+.|.. .|.+|+..-..+.|....+.....+ ..+.......+..+++.|||.
T Consensus 239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 0000 01113344555542 3456666555678888887644322 223333455899999999999
Q ss_pred EEEEEECCCeEE
Q 002266 251 YMATSSLDRQIL 262 (945)
Q Consensus 251 ~Lasgs~Dg~I~ 262 (945)
+.++...+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888888888774
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.31 E-value=0.9 Score=56.55 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=118.2
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCC--------CEEEEEEec----------------CCCEEEEEECCCcEE
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTL--------PIRVLAFNK----------------SGSMLAAAGDDEGIK 128 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~--------~V~~l~fsp----------------dg~~Lasgs~Dg~I~ 128 (945)
+..|+.++.++.|.-.|..+|+.+-.+..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45777778888999999999887765543211 112233321 345788899999999
Q ss_pred EEEcCCCeEEEEEecCCCCE-------------EEEEEcc--CCCEEEEEeC----------CCcEEEEEccCCeeeeee
Q 002266 129 LINTIDGSIARVLKGHKGPV-------------TGLAFDP--NSEYLASIDS----------IGTVIYWELQSGRELHNL 183 (945)
Q Consensus 129 iwd~~~~~~~~~l~~h~~~V-------------~~lafsp--dg~~Las~s~----------Dg~I~iwDl~t~~~i~~~ 183 (945)
-.|..+|+.+..+.. .+.| ..+.-.| .+..+++++. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 1211 0111122 2345555542 688999999999998877
Q ss_pred cccCCCCC-----------CCCCCceEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCcEEEeecC
Q 002266 184 KRVAPDIG-----------SDPSSMNVLSWSPDGETLAVPGL------------------KNDVVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 184 ~~~~~~~~-----------~~~~~i~~l~~spdg~~La~gs~------------------dg~I~vwD~~t~~~~~~~~~ 234 (945)
....+... .....-..+++.+....++++.. .+.|.-.|.++++....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 53221111 00011123455555555544321 24566778888887766654
Q ss_pred CCC--------CCeEEEEEcC-CCC---EEEEEECCCeEEEEECCCCeeeee
Q 002266 235 DHV--------QPICFLSWSP-NGK---YMATSSLDRQILIWDVGKKLDIDR 274 (945)
Q Consensus 235 ~h~--------~~I~~l~fSp-dg~---~Lasgs~Dg~I~IWD~~~~~~i~~ 274 (945)
.|. ....-+.+.. +|+ .++.++.+|.++++|-++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 221 1111122322 553 677788888888888888876654
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.30 E-value=0.22 Score=45.90 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=70.2
Q ss_pred ceEEEEcC---CC-CEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeee
Q 002266 197 MNVLSWSP---DG-ETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDI 272 (945)
Q Consensus 197 i~~l~~sp---dg-~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i 272 (945)
|+++++.. +| +.|++|+.|..|++|+-. +.+.++. ....|+.++-... ..++.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--ee
Confidence 34555554 32 689999999999999865 5566665 3467888876665 5688888999999997633 33
Q ss_pred eeccCCCCeeEEEEecC---C-CEEEEEEcCCeEE
Q 002266 273 DRQKFDDRICCMAWKPI---G-NALAVIDVMGKYG 303 (945)
Q Consensus 273 ~~~~~~~~V~~la~spd---g-~~Las~s~DG~I~ 303 (945)
-+.+....++++++..- | .-|++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44455566788776552 3 2688998888774
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.30 E-value=0.94 Score=51.55 Aligned_cols=221 Identities=12% Similarity=0.127 Sum_probs=106.2
Q ss_pred CCCEEEEEE-cCCcEEEEEcCCC----eeeeeccc---C-C---CCEEEEEEecCCCEEEEEEC------CCcEEEEEcC
Q 002266 72 NSTCLASGS-IDHSVKLYKFPGG----EFQTNITR---F-T---LPIRVLAFNKSGSMLAAAGD------DEGIKLINTI 133 (945)
Q Consensus 72 dg~~Lasgs-~Dg~V~iwdl~~g----~~~~~l~~---~-~---~~V~~l~fspdg~~Lasgs~------Dg~I~iwd~~ 133 (945)
+.++|+..+ ..+.|+|+|+.+. +..+.+.. + . .....+..-|+|..++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999998732 33333321 0 0 11223444578888887532 2458888888
Q ss_pred CCeEEEEEecC---CCCEEEEEEccCCCEEEEEeC--------------------CCcEEEEEccCCeeeeeecccCCCC
Q 002266 134 DGSIARVLKGH---KGPVTGLAFDPNSEYLASIDS--------------------IGTVIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 134 ~~~~~~~l~~h---~~~V~~lafspdg~~Las~s~--------------------Dg~I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
+.......... ...-..+-|.|..+.++++.. ..++.+||+.+.+.++++....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~--- 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE--- 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T---
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC---
Confidence 77777766543 334578889998888888753 3579999999999988886421
Q ss_pred CCCCCCceEEEEc--CCCCEEEEE-eCCCeEEEEEC-CCCc----EEEeecCC----C------------CCCeEEEEEc
Q 002266 191 GSDPSSMNVLSWS--PDGETLAVP-GLKNDVVMYDR-DTAE----KLFSLRGD----H------------VQPICFLSWS 246 (945)
Q Consensus 191 ~~~~~~i~~l~~s--pdg~~La~g-s~dg~I~vwD~-~t~~----~~~~~~~~----h------------~~~I~~l~fS 246 (945)
.......+.|. |+..+=+++ .....|..|-. ..++ .+..+... . ..-|+.+..|
T Consensus 243 --~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 243 --EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp --TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred --CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 11223455664 444443333 34556665544 3322 23333220 0 2457999999
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCC---eeeeeccC-----------------CCCeeEEEEecCCCEEEEEE
Q 002266 247 PNGKYMATSS-LDRQILIWDVGKK---LDIDRQKF-----------------DDRICCMAWKPIGNALAVID 297 (945)
Q Consensus 247 pdg~~Lasgs-~Dg~I~IWD~~~~---~~i~~~~~-----------------~~~V~~la~spdg~~Las~s 297 (945)
.|.++|..++ .+|.|+.||+... +++..... .+...-+..|-||+.|.+.+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999998776 5899999999763 23322111 12335677788888777664
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.045 Score=67.07 Aligned_cols=103 Identities=25% Similarity=0.366 Sum_probs=77.6
Q ss_pred cCCCEEEEEEcCCcEEEEEcCCCee-eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEE
Q 002266 71 PNSTCLASGSIDHSVKLYKFPGGEF-QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVT 149 (945)
Q Consensus 71 pdg~~Lasgs~Dg~V~iwdl~~g~~-~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~ 149 (945)
-.+..++.|+..|.|-..|+...-. ...=....++|++++|+.+|..++.|-.+|.|.+||+.++...+.+..|..+.+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888889999988754311 111123467999999999999999999999999999999999988887776665
Q ss_pred EEE---EccCCCEEEEEeCCCcEEEEEcc
Q 002266 150 GLA---FDPNSEYLASIDSIGTVIYWELQ 175 (945)
Q Consensus 150 ~la---fspdg~~Las~s~Dg~I~iwDl~ 175 (945)
++- +..++..++++...|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 554 4445667888877775 56543
No 391
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.27 E-value=0.013 Score=41.13 Aligned_cols=38 Identities=47% Similarity=0.945 Sum_probs=33.7
Q ss_pred eEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 136 SIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 136 ~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
.....+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.12 E-value=0.24 Score=59.92 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=97.2
Q ss_pred CCCEEEEEEcC------CcEEEEEcCCCeeeeecccCCCC-EEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeEEE
Q 002266 72 NSTCLASGSID------HSVKLYKFPGGEFQTNITRFTLP-IRVLAFNKSGSMLAAAGDDE-----GIKLINTIDGSIAR 139 (945)
Q Consensus 72 dg~~Lasgs~D------g~V~iwdl~~g~~~~~l~~~~~~-V~~l~fspdg~~Lasgs~Dg-----~I~iwd~~~~~~~~ 139 (945)
++..++.||.+ ..+..||..+..- ..+..-..+ .......-+|+..+.||.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56677777753 3477888776542 222211111 11112223678888888764 37889987664322
Q ss_pred --EEecCCCCEEEEEEccCCCEEEEEeCCC-----------------------cEEEEEccCCeeeeeecccCCCCCCCC
Q 002266 140 --VLKGHKGPVTGLAFDPNSEYLASIDSIG-----------------------TVIYWELQSGRELHNLKRVAPDIGSDP 194 (945)
Q Consensus 140 --~l~~h~~~V~~lafspdg~~Las~s~Dg-----------------------~I~iwDl~t~~~i~~~~~~~~~~~~~~ 194 (945)
.+.........+++ +|.+.+.|+.++ .+..||..+.+-... ... + ...
T Consensus 382 ~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m-~---~~r 454 (557)
T PHA02713 382 LPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNF-W---TGT 454 (557)
T ss_pred CCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCC-C---ccc
Confidence 11111111122222 577777777553 366777766543211 110 0 000
Q ss_pred CCceEEEEcCCCCEEEEEeCC------CeEEEEECCC---CcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCC--eEEE
Q 002266 195 SSMNVLSWSPDGETLAVPGLK------NDVVMYDRDT---AEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDR--QILI 263 (945)
Q Consensus 195 ~~i~~l~~spdg~~La~gs~d------g~I~vwD~~t---~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg--~I~I 263 (945)
.... ++ .-+|+..++|+.+ ..+..||..+ |..+..++. .......+.+ +|++.++|+.+| .+-.
T Consensus 455 ~~~~-~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 455 IRPG-VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccCc-EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEEE--CCEEEEEeeecceeehhh
Confidence 1111 22 2257777777654 2467899875 444444432 2222222233 788888998888 6667
Q ss_pred EECCCCeee
Q 002266 264 WDVGKKLDI 272 (945)
Q Consensus 264 WD~~~~~~i 272 (945)
||..+.+-.
T Consensus 530 yd~~~~~W~ 538 (557)
T PHA02713 530 FNVYTYEWN 538 (557)
T ss_pred cCccccccc
Confidence 777665443
No 393
>PRK10115 protease 2; Provisional
Probab=96.11 E-value=5.7 Score=49.38 Aligned_cols=111 Identities=8% Similarity=0.070 Sum_probs=69.1
Q ss_pred cceEEEEEecCCCEEEEEEc-----CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECC------CcEEEE
Q 002266 62 DGVTALALSPNSTCLASGSI-----DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDD------EGIKLI 130 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~-----Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~D------g~I~iw 130 (945)
-.+..+.|+|||++|+.+.. ...|++.|+.+|..+.... ...-..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999998887643 2468889998876332211 1111459999999877776543 357788
Q ss_pred EcCCC--eEEEEEecCCCCEE-EEEEccCCCEEEEEeC---CCcEEEEEc
Q 002266 131 NTIDG--SIARVLKGHKGPVT-GLAFDPNSEYLASIDS---IGTVIYWEL 174 (945)
Q Consensus 131 d~~~~--~~~~~l~~h~~~V~-~lafspdg~~Las~s~---Dg~I~iwDl 174 (945)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33334443333333 3333447887665433 356888884
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.21 Score=53.07 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=114.7
Q ss_pred EECCCCCEEEEEE----cCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEc------------------
Q 002266 24 LWDQQAHHLVTAS----SSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSI------------------ 81 (945)
Q Consensus 24 afspdg~~L~t~g----~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~------------------ 81 (945)
+|||||.+|+++- ...|.|-|||....-...-.+..|.-....+.|.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 4999999999873 135789999987655555567778777889999999999887642
Q ss_pred CCcEEEEEcCCCeeeeec--c--cCCCCEEEEEEecCCCEEEEEECCCc-----EEEEEcCCCeEEEEEe-------cCC
Q 002266 82 DHSVKLYKFPGGEFQTNI--T--RFTLPIRVLAFNKSGSMLAAAGDDEG-----IKLINTIDGSIARVLK-------GHK 145 (945)
Q Consensus 82 Dg~V~iwdl~~g~~~~~l--~--~~~~~V~~l~fspdg~~Lasgs~Dg~-----I~iwd~~~~~~~~~l~-------~h~ 145 (945)
.-.+.+.|..+|+++.+. . .+...|+.++..+||+..+.+-..|. -.+=-...++.+..+. ...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 012334444455443322 1 23456888888888876665543331 1111112233332222 123
Q ss_pred CCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC
Q 002266 146 GPVTGLAFDPNSEYLASIDS-IGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD 224 (945)
Q Consensus 146 ~~V~~lafspdg~~Las~s~-Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~ 224 (945)
..|-+|+.+-+..+++..+- .+...+||..+|..+...... -+.-.-+...-+++.+.+|.+.++...
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-----------daaGva~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-----------DAAGVAAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----------ccccceeccCceEEecCCceEEecccc
Confidence 56778888876666655554 446889999999876543321 011122333446666678888887443
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.03 E-value=0.98 Score=46.85 Aligned_cols=215 Identities=11% Similarity=0.085 Sum_probs=116.0
Q ss_pred ECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCC---CEEEEEEcCCcEEEEEcC--CCeeeeec
Q 002266 25 WDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNS---TCLASGSIDHSVKLYKFP--GGEFQTNI 99 (945)
Q Consensus 25 fspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg---~~Lasgs~Dg~V~iwdl~--~g~~~~~l 99 (945)
|.-....|+..--..+.|.-||..........+.+. ++.++.+--.+ .+.+.++..-.|.-||.. ......++
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~ 99 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTL 99 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeec
Confidence 444444454444466778889987653322233321 12233332222 233333333334456632 22222221
Q ss_pred c-----cCCCCEEEEEEecCCCEEEEEECC---------CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEE-Ee
Q 002266 100 T-----RFTLPIRVLAFNKSGSMLAAAGDD---------EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLAS-ID 164 (945)
Q Consensus 100 ~-----~~~~~V~~l~fspdg~~Lasgs~D---------g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las-~s 164 (945)
. .......+-..+|+|++++-.-.| |.++.|-. +..+..+...-+--+.++|+.+.+.+.. -+
T Consensus 100 ~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 100 FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEcc
Confidence 1 113455667788999984332222 22333322 1112222222334467899988776544 45
Q ss_pred CCCcEEEEE--ccCCe-----eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCC
Q 002266 165 SIGTVIYWE--LQSGR-----ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHV 237 (945)
Q Consensus 165 ~Dg~I~iwD--l~t~~-----~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~ 237 (945)
.+-.|.-|| ..+|. .+..+....+.. ....-.++...+|++.++.-..++|..+|..+++.+.++.- ..
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e---~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt 253 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE---SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PT 253 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcC---CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CC
Confidence 566787787 55553 333333221111 11122356677899888888899999999999999998876 57
Q ss_pred CCeEEEEEcC
Q 002266 238 QPICFLSWSP 247 (945)
Q Consensus 238 ~~I~~l~fSp 247 (945)
..|+++||--
T Consensus 254 ~qitsccFgG 263 (310)
T KOG4499|consen 254 PQITSCCFGG 263 (310)
T ss_pred CceEEEEecC
Confidence 7899999953
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.03 E-value=0.3 Score=56.79 Aligned_cols=158 Identities=17% Similarity=0.254 Sum_probs=92.3
Q ss_pred CCCCEEEEEEecCCCEEEEEE---CCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCC----CEEEEEeCCCcEEEEEc
Q 002266 102 FTLPIRVLAFNKSGSMLAAAG---DDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNS----EYLASIDSIGTVIYWEL 174 (945)
Q Consensus 102 ~~~~V~~l~fspdg~~Lasgs---~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg----~~Las~s~Dg~I~iwDl 174 (945)
.-.++..++|. ||+.++... .+|.+++=| ...+. .-..|.++.|.|-+ ..|++......|.||-+
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34578889997 666554432 233333322 22232 33568999999943 23444455678999988
Q ss_pred cC-----CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCC
Q 002266 175 QS-----GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNG 249 (945)
Q Consensus 175 ~t-----~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg 249 (945)
.. .+.+........ ..-+--...+.|||....|++-+....-.++++..........-...+-|.|.+|.+||
T Consensus 90 ~~s~~e~~K~l~sQtcEi~--e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIR--EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred ccCccccccceeeeeeecc--CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 52 122221111100 00111124589999999988877665556666654433322222356889999999999
Q ss_pred CEEEEEE-CCCeEEEEECCCC
Q 002266 250 KYMATSS-LDRQILIWDVGKK 269 (945)
Q Consensus 250 ~~Lasgs-~Dg~I~IWD~~~~ 269 (945)
..|+.+- ..=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 8876653 3446789986544
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.02 E-value=2.2 Score=46.05 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=89.1
Q ss_pred CEEEEEEecCCCEEEEEE--C-CCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE-ccCCeee
Q 002266 105 PIRVLAFNKSGSMLAAAG--D-DEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWE-LQSGREL 180 (945)
Q Consensus 105 ~V~~l~fspdg~~Lasgs--~-Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwD-l~t~~~i 180 (945)
.+...++++++..+|... . ...++++.. +.....+. ....+...+|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2 334555543 33222221 224788899999988777766666666664 2333222
Q ss_pred e-eecccCCCCCCCCCCceEEEEcCCCCEEEEEe---CCCeEEEEECC---CCcE-----EEeecCCCCCCeEEEEEcCC
Q 002266 181 H-NLKRVAPDIGSDPSSMNVLSWSPDGETLAVPG---LKNDVVMYDRD---TAEK-----LFSLRGDHVQPICFLSWSPN 248 (945)
Q Consensus 181 ~-~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs---~dg~I~vwD~~---t~~~-----~~~~~~~h~~~I~~l~fSpd 248 (945)
. .+.. ... ...|..+.++|||..+++-. .++.|.+--+. .+.+ ...+.......++.+.|.++
T Consensus 102 ~~~v~~--~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 PVEVDW--PGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred eEEecc--ccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1 1111 111 11789999999999888765 24666665432 2201 11222123468899999999
Q ss_pred CCEEEEEECCC
Q 002266 249 GKYMATSSLDR 259 (945)
Q Consensus 249 g~~Lasgs~Dg 259 (945)
+.+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 98877765543
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.96 E-value=0.018 Score=40.31 Aligned_cols=38 Identities=45% Similarity=0.866 Sum_probs=31.8
Q ss_pred cEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002266 227 EKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWD 265 (945)
Q Consensus 227 ~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD 265 (945)
+....+.. |...|.+++|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34445544 778999999999999999999999999996
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.93 E-value=1.9 Score=46.53 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=90.7
Q ss_pred ceEEEEEecCCCEEEEEE-cCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEE-cCCCeEE-E
Q 002266 63 GVTALALSPNSTCLASGS-IDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLIN-TIDGSIA-R 139 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs-~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd-~~~~~~~-~ 139 (945)
.+.+.++++++..++... .++.-.+|-...+.....+. ....+....|++++...++...+....++. ..++... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999998887665 22333334333333222222 233778889999987777766666666663 3333322 1
Q ss_pred EEec--CCCCEEEEEEccCCCEEEEEe---CCCcEEEEEccCCee--eeeecccCCCCCCCCCCceEEEEcCCCCEEEEE
Q 002266 140 VLKG--HKGPVTGLAFDPNSEYLASID---SIGTVIYWELQSGRE--LHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVP 212 (945)
Q Consensus 140 ~l~~--h~~~V~~lafspdg~~Las~s---~Dg~I~iwDl~t~~~--i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~g 212 (945)
.+.. ....|..+.++|||..++... .++.|.+--+..... ...+.............+..+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 1211 112899999999999887665 346777766543211 112211111111224567899999999877776
Q ss_pred eCCC
Q 002266 213 GLKN 216 (945)
Q Consensus 213 s~dg 216 (945)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5543
No 400
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.93 E-value=1.4 Score=50.48 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=81.1
Q ss_pred CCEEEEEECCCCCEEEEEE----------cCCC-eEEEEcCCCCc-c--ccccccccccceEEEEEecCCCEEEEEEcCC
Q 002266 18 ASFCSILWDQQAHHLVTAS----------SSET-TISIHDPLLPS-N--LPKILRHHRDGVTALALSPNSTCLASGSIDH 83 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g----------~~dg-~V~IWd~~~~~-~--~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg 83 (945)
.....|+|.++|+.+++.. ...+ .|.+++-..+. . ....+.......+.|++.++| ++++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-
Confidence 4567899999999877652 1123 77777543222 1 123333334456889999988 4444 443
Q ss_pred cEEEE-EcCC-C----eeeee---ccc----CCCCEEEEEEecCCCEEEEEECC-------------------CcEEEEE
Q 002266 84 SVKLY-KFPG-G----EFQTN---ITR----FTLPIRVLAFNKSGSMLAAAGDD-------------------EGIKLIN 131 (945)
Q Consensus 84 ~V~iw-dl~~-g----~~~~~---l~~----~~~~V~~l~fspdg~~Lasgs~D-------------------g~I~iwd 131 (945)
.|..| +... + +.... +.. +......++|.|||.+.++-+.. |.|..++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 35444 4321 1 21111 221 12347789999999876655421 3456666
Q ss_pred cCCCeEEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002266 132 TIDGSIARVLKGHKGPVTGLAFDPNSEYLASID 164 (945)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s 164 (945)
...+.....-.++ .....++|+|+|+++++-.
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 6554433222333 3457899999998876644
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.65 E-value=0.66 Score=56.10 Aligned_cols=214 Identities=12% Similarity=0.034 Sum_probs=105.6
Q ss_pred cEEEEEcCCCeeeeecccCCCCE-EEEEEecCCCEEEEEECC------CcEEEEEcCCCeEEE--EEecCCCCEEEEEEc
Q 002266 84 SVKLYKFPGGEFQTNITRFTLPI-RVLAFNKSGSMLAAAGDD------EGIKLINTIDGSIAR--VLKGHKGPVTGLAFD 154 (945)
Q Consensus 84 ~V~iwdl~~g~~~~~l~~~~~~V-~~l~fspdg~~Lasgs~D------g~I~iwd~~~~~~~~--~l~~h~~~V~~lafs 154 (945)
.+..||..+++-. .+.....+. ......-++..+++||.+ ..+..||+.+..... .+.........+ .
T Consensus 273 ~v~~yd~~~~~W~-~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~ 349 (557)
T PHA02713 273 CILVYNINTMEYS-VISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--V 349 (557)
T ss_pred CEEEEeCCCCeEE-ECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--E
Confidence 5677887766532 222111111 111222366777887753 247788887764321 111111122222 2
Q ss_pred cCCCEEEEEeCCC-----cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC--------------
Q 002266 155 PNSEYLASIDSIG-----TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK-------------- 215 (945)
Q Consensus 155 pdg~~Las~s~Dg-----~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d-------------- 215 (945)
-+|++.+.|+.++ .+..||..+..-.. +... +.. ......++ -+|+..++|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~m-p~~---r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDM-PIA---LSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCC-Ccc---cccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence 2577778887764 47889987654321 1111 110 11111222 267777777754
Q ss_pred ---------CeEEEEECCCC--cEEEeecCCCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCC-CeeeeeccC
Q 002266 216 ---------NDVVMYDRDTA--EKLFSLRGDHVQPICFLSWSPNGKYMATSSLD------RQILIWDVGK-KLDIDRQKF 277 (945)
Q Consensus 216 ---------g~I~vwD~~t~--~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D------g~I~IWD~~~-~~~i~~~~~ 277 (945)
..+..||..+. ..+..+.. .....-...-+|++.+.|+.+ ..+..||..+ .+-......
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWT---GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCc---ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence 24778887654 33332221 111111122367777777654 2467899887 444333222
Q ss_pred C--CCeeEEEEecCCCEEEEEEcCC--eEEEEecCCCC
Q 002266 278 D--DRICCMAWKPIGNALAVIDVMG--KYGVWESVVPS 311 (945)
Q Consensus 278 ~--~~V~~la~spdg~~Las~s~DG--~I~iWd~~~~~ 311 (945)
. ....+++. -+++..++|+.+| .+..||+.+.+
T Consensus 500 ~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 500 ESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CcccccceeEE-ECCEEEEEeeecceeehhhcCccccc
Confidence 2 12222222 2567788888888 55566665544
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.62 E-value=5.2 Score=45.06 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee---eeec----ccCCCCEEEEEEecC---CCEEEEEEC-C-------
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFPGGEF---QTNI----TRFTLPIRVLAFNKS---GSMLAAAGD-D------- 124 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~---~~~l----~~~~~~V~~l~fspd---g~~Lasgs~-D------- 124 (945)
..++|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4579999999987765 6699999999 44443 2222 223457899999994 234433332 1
Q ss_pred -CcEEEEEcCCC--e------EEEEEec---CCCCEEEEEEccCCCEEEEEeCCCc---EEEEEccCCeeeeeecc-c--
Q 002266 125 -EGIKLINTIDG--S------IARVLKG---HKGPVTGLAFDPNSEYLASIDSIGT---VIYWELQSGRELHNLKR-V-- 186 (945)
Q Consensus 125 -g~I~iwd~~~~--~------~~~~l~~---h~~~V~~lafspdg~~Las~s~Dg~---I~iwDl~t~~~i~~~~~-~-- 186 (945)
..|.-|....+ . ++..+.. .......|+|.|+|.++++.+..+. ..-.+...++.++.-.. .
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 13444444333 1 1112222 2345577999999976666654432 00000001122111100 0
Q ss_pred --CCCC----------CCCCCCceEEEEcCC-CCEEEEE-eCCC--eEEEEECC--------C------C----------
Q 002266 187 --APDI----------GSDPSSMNVLSWSPD-GETLAVP-GLKN--DVVMYDRD--------T------A---------- 226 (945)
Q Consensus 187 --~~~~----------~~~~~~i~~l~~spd-g~~La~g-s~dg--~I~vwD~~--------t------~---------- 226 (945)
.+.. ...-.....++|+|. |.++++= +.++ .|.+.... . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0000 000112356999997 6655442 1222 23332110 0 0
Q ss_pred ---cEEEeecCCCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeeee-e----ccCCCCeeEEEEecCCC
Q 002266 227 ---EKLFSLRGDHVQPICFLSWSP-------NGKYMATSSLDRQILIWDVGKKLDID-R----QKFDDRICCMAWKPIGN 291 (945)
Q Consensus 227 ---~~~~~~~~~h~~~I~~l~fSp-------dg~~Lasgs~Dg~I~IWD~~~~~~i~-~----~~~~~~V~~la~spdg~ 291 (945)
.++..+. +...+..+.|-. .|.++++.-..+.|....+.....+. . .....++..+++.|||.
T Consensus 241 ~~~~P~~~~~--~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 241 GFVPPVFAYP--PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TS---SEEET--TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CcCccceeec--CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 1122222 234566676653 45566666667788888886443222 2 12345799999999999
Q ss_pred EEEEEEcCCeEE
Q 002266 292 ALAVIDVMGKYG 303 (945)
Q Consensus 292 ~Las~s~DG~I~ 303 (945)
+.++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888888888875
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.59 E-value=0.79 Score=55.46 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=115.2
Q ss_pred CCEEEEEEcCC------CeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcC------CcEEEEEcCCCeee
Q 002266 29 AHHLVTASSSE------TTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSID------HSVKLYKFPGGEFQ 96 (945)
Q Consensus 29 g~~L~t~g~~d------g~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~D------g~V~iwdl~~g~~~ 96 (945)
+..+++|| .. ..+..+|..+..-....-..+...-.+++.. ++...++|+.+ ..+..||....+-.
T Consensus 285 ~~l~~vGG-~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGG-YNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECC-CCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 44445554 44 4677888766521111111122223344444 45778888888 35778887766522
Q ss_pred eecccCCCCEEEEE-EecCCCEEEEEECCCc-----EEEEEcCCCeEEEEEecCCCCEEEEEE-ccCCCEEEEEeCCC--
Q 002266 97 TNITRFTLPIRVLA-FNKSGSMLAAAGDDEG-----IKLINTIDGSIARVLKGHKGPVTGLAF-DPNSEYLASIDSIG-- 167 (945)
Q Consensus 97 ~~l~~~~~~V~~l~-fspdg~~Lasgs~Dg~-----I~iwd~~~~~~~~~l~~h~~~V~~laf-spdg~~Las~s~Dg-- 167 (945)
. +..-..+-.... -.-+|...|+||.||. |-.||..+.+-...-. ......+... .-+|.+.++|+.++
T Consensus 363 ~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 2 221111111111 1227888999998874 7778877654221111 1112222222 22577778887654
Q ss_pred ----cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEe--ecCCC
Q 002266 168 ----TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN-----DVVMYDRDTAEKLFS--LRGDH 236 (945)
Q Consensus 168 ----~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg-----~I~vwD~~t~~~~~~--~~~~h 236 (945)
.+..||..+..-...-.-. ....... ++ .-++...++|+.++ .|..||..+.+-... ... .
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~-----~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-~ 512 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMN-----TRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-P 512 (571)
T ss_pred cccceEEEEcCCCCceeecCCcc-----cccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-c
Confidence 4677887766432211111 0011111 22 22677888888776 377888876543222 211 1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCe
Q 002266 237 VQPICFLSWSPNGKYMATSSLDR-----QILIWDVGKKL 270 (945)
Q Consensus 237 ~~~I~~l~fSpdg~~Lasgs~Dg-----~I~IWD~~~~~ 270 (945)
...+..+.+ ++...+.|+.|| +|..||..+.+
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 122221222 667777887765 46667665544
No 404
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.16 Score=62.53 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=71.9
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEE
Q 002266 28 QAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIR 107 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~ 107 (945)
.+..+++++ ..|.|...|....-.....-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++..+.+..+..+..
T Consensus 98 ~~~~ivi~T-s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGT-SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEc-CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 344566664 7788888776442111112223367999999999999999999999999999999998888887777655
Q ss_pred EEE---EecCCCEEEEEECCCcEEEEEc
Q 002266 108 VLA---FNKSGSMLAAAGDDEGIKLINT 132 (945)
Q Consensus 108 ~l~---fspdg~~Lasgs~Dg~I~iwd~ 132 (945)
.+- +..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 3445666777766665 4543
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.52 E-value=3.1 Score=44.65 Aligned_cols=190 Identities=11% Similarity=0.055 Sum_probs=111.2
Q ss_pred CCEEEEEECCCCCEEEEEEcCCC--eEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCee
Q 002266 18 ASFCSILWDQQAHHLVTASSSET--TISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEF 95 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg--~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~ 95 (945)
.--..+.|..+|.++-++| .-| .|+.+|+.++.......-...----.++...| +.....=.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG-~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTG-LYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEEC-STTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCC-CCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceE
Confidence 4456677777787777766 444 78889988874322211111111112333332 2333334678999999998888
Q ss_pred eeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC-----CCCEEEEEEccCCCEEEEEeCCCcEE
Q 002266 96 QTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH-----KGPVTGLAFDPNSEYLASIDSIGTVI 170 (945)
Q Consensus 96 ~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h-----~~~V~~lafspdg~~Las~s~Dg~I~ 170 (945)
+..+.- ...=+.++ .++..|+.......++++|..+.+....+... -..++.+.|. +|...|=.=....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 777653 34556666 46777888777788999999887766665432 1345667776 676666666667888
Q ss_pred EEEccCCeeeeeeccc--CC------CCCCCCCCceEEEEcCCCCEEEEEe
Q 002266 171 YWELQSGRELHNLKRV--AP------DIGSDPSSMNVLSWSPDGETLAVPG 213 (945)
Q Consensus 171 iwDl~t~~~i~~~~~~--~~------~~~~~~~~i~~l~~spdg~~La~gs 213 (945)
..|..+|.....+... .+ .........+.|+|.|.+..|++.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8999999877655321 00 1111245678999999777666655
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.50 E-value=6.5 Score=45.43 Aligned_cols=272 Identities=13% Similarity=0.183 Sum_probs=141.8
Q ss_pred CEEEEEEcCCCeEEEEcCCCCcccc-cc-c-cccccceEEEEEec-----CCCEEEEEEcCCcEEEEEcCC--Ce-----
Q 002266 30 HHLVTASSSETTISIHDPLLPSNLP-KI-L-RHHRDGVTALALSP-----NSTCLASGSIDHSVKLYKFPG--GE----- 94 (945)
Q Consensus 30 ~~L~t~g~~dg~V~IWd~~~~~~~~-~~-l-~~h~~~V~~la~sp-----dg~~Lasgs~Dg~V~iwdl~~--g~----- 94 (945)
..|++| +..|.++||+........ .. + ..-..+|..+..-. +...||+ -.-..+.||.+.. |.
T Consensus 38 d~IivG-S~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 38 DKIIVG-SYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred cEEEEe-ccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 456665 489999999985443111 11 1 12356888887653 2234444 5567788888721 11
Q ss_pred --eeeecccCC--CCEEEEEEec----C-CCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002266 95 --FQTNITRFT--LPIRVLAFNK----S-GSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDS 165 (945)
Q Consensus 95 --~~~~l~~~~--~~V~~l~fsp----d-g~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~ 165 (945)
.+..+..|. .....+++-| . ..+|++-+-||.+.+|+-+.-.....+.. ---.-.+.|.+.-..+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 112222232 2333444433 2 36788899999999999765544444443 222234778888888999998
Q ss_pred CCcEEEEEccCCeeeee--------------ecccCCC----CCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 002266 166 IGTVIYWELQSGRELHN--------------LKRVAPD----IGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAE 227 (945)
Q Consensus 166 Dg~I~iwDl~t~~~i~~--------------~~~~~~~----~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~ 227 (945)
+..+..|....-..... -+...+. ++...-.+..+.++.....+++-+ ...+.+++-. |.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~ 272 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GS 272 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-Ce
Confidence 88898887532110000 0000000 000011122333333333444443 4566666653 54
Q ss_pred EEEeecCCCCCCeEEEEEc----CCC---CEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEE---ecCCCEEEEEE
Q 002266 228 KLFSLRGDHVQPICFLSWS----PNG---KYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAW---KPIGNALAVID 297 (945)
Q Consensus 228 ~~~~~~~~h~~~I~~l~fS----pdg---~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~---spdg~~Las~s 297 (945)
.....+- ...+.....|. ..+ ..++.++.++.+.||.=.+ ++-.........++.. ..-...|++-+
T Consensus 273 l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 273 LRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEc
Confidence 4333321 11122222221 122 2478888899999985333 3322222222223333 23344788889
Q ss_pred cCCeEEEEecCC
Q 002266 298 VMGKYGVWESVV 309 (945)
Q Consensus 298 ~DG~I~iWd~~~ 309 (945)
.+|.|.+-=+.+
T Consensus 350 ~~G~L~v~YLGT 361 (418)
T PF14727_consen 350 DEGQLSVSYLGT 361 (418)
T ss_pred CCCcEEEEEeCC
Confidence 999998865544
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.30 E-value=2.6 Score=52.62 Aligned_cols=160 Identities=13% Similarity=0.202 Sum_probs=96.0
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCE-------------EEEEEec--CCCEEEEEEC----------CCcE
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPI-------------RVLAFNK--SGSMLAAAGD----------DEGI 127 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V-------------~~l~fsp--dg~~Lasgs~----------Dg~I 127 (945)
+..++.++.|+.|.-.|..+|+....+.. .+.| ..+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 34788888999999999999987755432 1111 0111111 2345666643 5789
Q ss_pred EEEEcCCCeEEEEEecC---------CC--------CE-EEEEEccCCCEEEEEe------------------CCCcEEE
Q 002266 128 KLINTIDGSIARVLKGH---------KG--------PV-TGLAFDPNSEYLASID------------------SIGTVIY 171 (945)
Q Consensus 128 ~iwd~~~~~~~~~l~~h---------~~--------~V-~~lafspdg~~Las~s------------------~Dg~I~i 171 (945)
+-+|..+|+.+..+..- .+ .+ ..+++++...+++... ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999999988766421 00 11 2345566555444422 1245777
Q ss_pred EEccCCeeeeeecccCCCCCCC--CCCceEEEEcC-CCC---EEEEEeCCCeEEEEECCCCcEEEeec
Q 002266 172 WELQSGRELHNLKRVAPDIGSD--PSSMNVLSWSP-DGE---TLAVPGLKNDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 172 wDl~t~~~i~~~~~~~~~~~~~--~~~i~~l~~sp-dg~---~La~gs~dg~I~vwD~~t~~~~~~~~ 233 (945)
.|..+|+....+.....+.-.- .....-+.+.. +|+ .++.++.+|.++++|.++++.+....
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 7888888777665432221110 11122233333 563 78889999999999999999876653
No 408
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=0.049 Score=56.15 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC-eeeeecccCCCCEE-EEEEecCC
Q 002266 38 SETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG-EFQTNITRFTLPIR-VLAFNKSG 115 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g-~~~~~l~~~~~~V~-~l~fspdg 115 (945)
.+|.|+-+++.......+....|...-..+ .-+..|++|+.+|.|.+|....- .....+......|. .+.-..++
T Consensus 38 a~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~ 114 (238)
T KOG2444|consen 38 ADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS 114 (238)
T ss_pred CCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc
Confidence 677777666543322222222232221112 23467899999999999987521 11111111122222 23333456
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCC-CCEEEEEEccCCCEEEEE--eCCCcEEEEEcc
Q 002266 116 SMLAAAGDDEGIKLINTIDGSIARVLKGHK-GPVTGLAFDPNSEYLASI--DSIGTVIYWELQ 175 (945)
Q Consensus 116 ~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~-~~V~~lafspdg~~Las~--s~Dg~I~iwDl~ 175 (945)
.+..+++.+|.|+.|++.-++.+.....|. .++..+.....+++++.+ +.|..++.|++.
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 688999999999999998888777666666 444444444445555555 555555555554
No 409
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.24 E-value=0.71 Score=55.85 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=117.9
Q ss_pred CCCEEEEEEcC------CcEEEEEcCCCeeeeeccc-CCCCEEEEEEecCCCEEEEEECC-C-----cEEEEEcCCCeEE
Q 002266 72 NSTCLASGSID------HSVKLYKFPGGEFQTNITR-FTLPIRVLAFNKSGSMLAAAGDD-E-----GIKLINTIDGSIA 138 (945)
Q Consensus 72 dg~~Lasgs~D------g~V~iwdl~~g~~~~~l~~-~~~~V~~l~fspdg~~Lasgs~D-g-----~I~iwd~~~~~~~ 138 (945)
.+.+++.|+.+ ..|..||..++.-.....- ....-.+++.. ++...++||.+ | .+..||....+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 35566777766 3577888877643221111 12222333333 56788889888 3 4778888776532
Q ss_pred E--EEecCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEEccCCeeeeeecccCCCCCCCCCCceEEE-EcCCCCEEE
Q 002266 139 R--VLKGHKGPVTGLAFDPNSEYLASIDSIGT-----VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLS-WSPDGETLA 210 (945)
Q Consensus 139 ~--~l~~h~~~V~~lafspdg~~Las~s~Dg~-----I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~-~spdg~~La 210 (945)
. .+...........+ +|.+.++|+.||. |-.||..+.+-...-. - ........ -.-+|...+
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----m----~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----M----LTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC----C----CcceeeeEEEEECCEEEE
Confidence 2 12212222221222 5788889998874 6677766543211110 0 00111111 122688888
Q ss_pred EEeCCC------eEEEEECCCCc--EEEeecCCCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeeeeccC
Q 002266 211 VPGLKN------DVVMYDRDTAE--KLFSLRGDHVQPICFLSWSPNGKYMATSSLDR-----QILIWDVGKKLDIDRQKF 277 (945)
Q Consensus 211 ~gs~dg------~I~vwD~~t~~--~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg-----~I~IWD~~~~~~i~~~~~ 277 (945)
+|+.++ .+..||..+.. .+..... ...... ++ .-++.+.+.||.|+ +|..||..+.+.......
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 887554 57888877654 3222221 111111 22 22677788888776 377788877666555333
Q ss_pred CCCeeEEEEec-CCCEEEEEEcCCe-----EEEEecCCCC
Q 002266 278 DDRICCMAWKP-IGNALAVIDVMGK-----YGVWESVVPS 311 (945)
Q Consensus 278 ~~~V~~la~sp-dg~~Las~s~DG~-----I~iWd~~~~~ 311 (945)
..+...+.... ++...++|+.||. |..||..+..
T Consensus 510 ~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 510 TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 33333332222 3456666776654 4555544443
No 410
>PHA03098 kelch-like protein; Provisional
Probab=95.15 E-value=1.3 Score=53.41 Aligned_cols=191 Identities=14% Similarity=0.049 Sum_probs=92.6
Q ss_pred cCCCEEEEEEcCC------cEEEEEcCCCeeeeecccCC-CCEEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeEE
Q 002266 71 PNSTCLASGSIDH------SVKLYKFPGGEFQTNITRFT-LPIRVLAFNKSGSMLAAAGDDE-----GIKLINTIDGSIA 138 (945)
Q Consensus 71 pdg~~Lasgs~Dg------~V~iwdl~~g~~~~~l~~~~-~~V~~l~fspdg~~Lasgs~Dg-----~I~iwd~~~~~~~ 138 (945)
.++..++.|+.++ .+..||..+.+-. .+.... .........-++..++.||.++ .+..||..+.+-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3556677776542 5778887766542 222111 1111111223677888887653 4777888765432
Q ss_pred EE--EecCCCCEEEEEEccCCCEEEEEeCC------CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEE
Q 002266 139 RV--LKGHKGPVTGLAFDPNSEYLASIDSI------GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLA 210 (945)
Q Consensus 139 ~~--l~~h~~~V~~lafspdg~~Las~s~D------g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La 210 (945)
.. +....... +++ .-++.+++.|+.+ ..+..||..+.+-... ... +.. ... .++ ...++..++
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~-p~~---r~~-~~~-~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPL-PIS---HYG-GCA-IYHDGKIYV 442 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCC-Ccc---ccC-ceE-EEECCEEEE
Confidence 21 11111111 122 2256666766632 3578888876543221 111 100 011 112 223566677
Q ss_pred EEeCC--------CeEEEEECCCCc--EEEeecCCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeeee
Q 002266 211 VPGLK--------NDVVMYDRDTAE--KLFSLRGDHVQPICFLSWSPNGKYMATSSLD-----RQILIWDVGKKLDIDR 274 (945)
Q Consensus 211 ~gs~d--------g~I~vwD~~t~~--~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D-----g~I~IWD~~~~~~i~~ 274 (945)
+|+.+ ..+.+||..+.+ .+..... .......+.+ ++++++.|+.+ ..|.+||..+..-...
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 77643 238889987543 3222221 1111122222 66777777654 4677787776654433
No 411
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=1.9 Score=51.71 Aligned_cols=196 Identities=13% Similarity=0.185 Sum_probs=106.2
Q ss_pred CcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE---EEecCCCCEEEEEEccCCCE
Q 002266 83 HSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR---VLKGHKGPVTGLAFDPNSEY 159 (945)
Q Consensus 83 g~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~---~l~~h~~~V~~lafspdg~~ 159 (945)
-.|+||+. +|+....+......+-.+.|+.+. .|++...+|+++||++-...... -.......|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 45888886 577777766666688899999764 56666799999999984332211 112233445555555566
Q ss_pred EEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEc--CCCC--EEEEEeCCC--eEEEEECCCCc-EEEee
Q 002266 160 LASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWS--PDGE--TLAVPGLKN--DVVMYDRDTAE-KLFSL 232 (945)
Q Consensus 160 Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s--pdg~--~La~gs~dg--~I~vwD~~t~~-~~~~~ 232 (945)
+++-..+|.+.+-.-.....+...+.. ...... ..+|. +++. .++.. .+- ...++-..... ....+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~di----P~~~~~--~~~Wt~~~~~~~~~~ll~-v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDI----PYNELP--KSCWTVFQPHRQSTILLD-VDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCC----CCccCC--CcceeEecCCCcceeEEe-echhhhhcccceeccccccccc
Confidence 444445566555432222222232221 111111 12332 2211 11111 010 00111111111 11222
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC--CCCeeEEEEecCC
Q 002266 233 RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF--DDRICCMAWKPIG 290 (945)
Q Consensus 233 ~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~--~~~V~~la~spdg 290 (945)
.. ..+.+..+..||+.++|+--..+|.|.+-+.+..+.+..... ......++|..+.
T Consensus 213 ~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 22 236788899999999999999999999999888777666442 3344467776544
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.85 E-value=7.9 Score=42.80 Aligned_cols=268 Identities=13% Similarity=0.140 Sum_probs=128.0
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccc--c---ccceEEEEEecCCCEEEEEEcCCcEEEEEcC
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRH--H---RDGVTALALSPNSTCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~--h---~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~ 91 (945)
...+.+|.|.....-+++ | ..+.|. ....+...-..... . .-...+|.|..+ ..+++ +..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~V-G-~~g~il--~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAV-G-AYGTIL--KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEE-E-TTTEEE--EESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEE-e-cCCEEE--EECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC
Confidence 467999999955554554 4 466543 32233221211111 1 123567777643 34444 4555 4444445
Q ss_pred CCeeeeecc---cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-Ce-EEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 92 GGEFQTNIT---RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTID-GS-IARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 92 ~g~~~~~l~---~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~-~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
.|+.-..+. ........+....++ ....++..|.| |-..+ |. -........+.+..+.-+++|.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 555444332 223344444444444 34444555644 43333 32 222334455788999999999999988765
Q ss_pred CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcEEEe--ecC-CCCCCeEE
Q 002266 167 GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDR-DTAEKLFS--LRG-DHVQPICF 242 (945)
Q Consensus 167 g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~-~t~~~~~~--~~~-~h~~~I~~ 242 (945)
....-||--... -..... .....+..+.|.|++.+.+++ ..|.|++=+. ...+.-.. ... ...-.+..
T Consensus 166 ~~~~s~~~G~~~-w~~~~r------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld 237 (302)
T PF14870_consen 166 NFYSSWDPGQTT-WQPHNR------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILD 237 (302)
T ss_dssp SEEEEE-TT-SS--EEEE--------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred cEEEEecCCCcc-ceEEcc------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEE
Confidence 555667643211 111111 123668899999998876655 7888888872 22222111 111 12335889
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeeeec----cCCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 002266 243 LSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ----KFDDRICCMAWKPIGNALAVIDVMGKYGVW 305 (945)
Q Consensus 243 l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~----~~~~~V~~la~spdg~~Las~s~DG~I~iW 305 (945)
++|.+++...|+|+ .|.| +...+.++.=... .....++.+.|.+.. .-.+.+.+|.|.-|
T Consensus 238 ~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 238 LAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred EEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 99999988887776 4533 4455555443332 335678899998664 45555688887766
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.29 Score=60.52 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=91.7
Q ss_pred CCEEEEEEecCCCEEEEEEC--CCcEEEEEcCCCeEE-----EEEe------cCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 002266 104 LPIRVLAFNKSGSMLAAAGD--DEGIKLINTIDGSIA-----RVLK------GHKGPVTGLAFDPNSE-YLASIDSIGTV 169 (945)
Q Consensus 104 ~~V~~l~fspdg~~Lasgs~--Dg~I~iwd~~~~~~~-----~~l~------~h~~~V~~lafspdg~-~Las~s~Dg~I 169 (945)
-++..+...+|+...++... +-.|..||++.-... .-+. .......++.|+|.-. ..+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666777778776555433 336888998753211 1111 1234567888988543 35667788988
Q ss_pred EEEEccCCeee-eeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC---CCCCeEEEEE
Q 002266 170 IYWELQSGREL-HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLSW 245 (945)
Q Consensus 170 ~iwDl~t~~~i-~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~---h~~~I~~l~f 245 (945)
++..+...... ..+ .-....++++|+|.|+.+++|-..|++.-|... .+....+.+. ....|.+|+|
T Consensus 181 ~V~~~~~~~~~v~s~--------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF--------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhhhhhccc--------CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 88876543211 111 112456899999999999999999999999765 4433444331 2367999999
Q ss_pred cCCCCEEEEE
Q 002266 246 SPNGKYMATS 255 (945)
Q Consensus 246 Spdg~~Lasg 255 (945)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8877776653
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.58 E-value=4 Score=42.55 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=112.2
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCC--CEEEE-EECCCcEEEEEcCC--CeEEEEEec----
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSG--SMLAA-AGDDEGIKLINTID--GSIARVLKG---- 143 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg--~~Las-gs~Dg~I~iwd~~~--~~~~~~l~~---- 143 (945)
+.++.+--..|.|.-||+...+....-. ...++..+.+--.+ ..+++ ++..-.|.-||... -...+++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3455555556778888887654332211 11123333332222 12333 33333344566432 222223211
Q ss_pred -CCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE-E
Q 002266 144 -HKGPVTGLAFDPNSEYLASIDSI---------GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV-P 212 (945)
Q Consensus 144 -h~~~V~~lafspdg~~Las~s~D---------g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~-g 212 (945)
.....+.-..+|+|++++-...| |.++.|-... .+..+. ..-...+.++|+.+.+.+.. -
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~-------~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIW-------NCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceeee-------hhccCCccccccccCcEEEEEc
Confidence 13456667789999985433322 3344443211 111111 11123356899988776655 4
Q ss_pred eCCCeEEEEE--CCCCc-----EEEeecCC--CC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC-CCCe
Q 002266 213 GLKNDVVMYD--RDTAE-----KLFSLRGD--HV-QPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF-DDRI 281 (945)
Q Consensus 213 s~dg~I~vwD--~~t~~-----~~~~~~~~--h~-~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-~~~V 281 (945)
+.+-.|.-|| ..++. .+..+... .. .....++....|.+.+++-..++|..+|..+++.+..+.. ...|
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 5566786677 44443 33333321 11 1223456677888888888899999999999999988665 4679
Q ss_pred eEEEEecC
Q 002266 282 CCMAWKPI 289 (945)
Q Consensus 282 ~~la~spd 289 (945)
++++|--.
T Consensus 257 tsccFgGk 264 (310)
T KOG4499|consen 257 TSCCFGGK 264 (310)
T ss_pred EEEEecCC
Confidence 99999754
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=8.4 Score=41.61 Aligned_cols=272 Identities=12% Similarity=0.088 Sum_probs=140.8
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe---ee
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE---FQ 96 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~---~~ 96 (945)
+..+.++ +++...+- .+.-++|.|+.++.. +..+..-.-.=.+-.|.-.|++..++..|.-+.++|+.+.+ +.
T Consensus 89 ~~Dv~vs--e~yvyvad-~ssGL~IvDIS~P~s-P~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 89 FADVRVS--EEYVYVAD-WSSGLRIVDISTPDS-PTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hheeEec--ccEEEEEc-CCCceEEEeccCCCC-cceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 3344453 55566664 667799999987753 32222111111233344568888888866567788886543 33
Q ss_pred eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE--ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002266 97 TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL--KGHKGPVTGLAFDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 97 ~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l--~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl 174 (945)
..+.........++.| |++-.++..|+.+.+.|+........+ ......+.++..+++-.+++.. +--+.+-|.
T Consensus 165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~ 240 (370)
T COG5276 165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDV 240 (370)
T ss_pred eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEec
Confidence 3333334444566665 677777788999999999765422111 1122367888877665555544 345777787
Q ss_pred cCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecC-CCCC-CeEEEEEcCCCCEE
Q 002266 175 QSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRG-DHVQ-PICFLSWSPNGKYM 252 (945)
Q Consensus 175 ~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~-~h~~-~I~~l~fSpdg~~L 252 (945)
...+....+..... .....++ .+.-.|++..+...+..+.+.|..+....+.... ...+ .-..+.. .|.++
T Consensus 241 s~~ssp~~~gsyet---~~p~~~s--~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~ 313 (370)
T COG5276 241 SGPSSPTVFGSYET---SNPVSIS--TVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYN 313 (370)
T ss_pred CCCCCceEeecccc---CCccccc--ceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCee
Confidence 66654443332111 1111122 2333566666666666666666654332211110 0000 1111211 23333
Q ss_pred EEEECCCeEEEEECCCCeeeee-ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 253 ATSSLDRQILIWDVGKKLDIDR-QKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 253 asgs~Dg~I~IWD~~~~~~i~~-~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
..+..+ ...+.+....+.... ......+.+.+.+-+.+.+.+...+|-+.||+.
T Consensus 314 yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 314 YIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred EeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 333322 333334333222211 111122334444445567888899999999985
No 416
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.50 E-value=7.7 Score=41.49 Aligned_cols=239 Identities=12% Similarity=0.036 Sum_probs=145.9
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEE-E
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIAR-V 140 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~-~ 140 (945)
..-..++-.|||..-+++...|.|--.|-.+|+....-.+....-..|..-|||..-++-+.. .|.-+|.++.+... .
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 345677888999888888888888888888888765555555666778888888765553332 45556665544321 1
Q ss_pred --EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeE
Q 002266 141 --LKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDV 218 (945)
Q Consensus 141 --l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I 218 (945)
............|++.|.+-+++.. |.---.|-.+ ..+..+... .....+.||..|+|..-++.-.++.|
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaP------qG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAP------QGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccC------CCCCCcceEECCCCcEEEEeccccce
Confidence 1223456778899999998888753 2111111111 112222211 11234568999999988887778889
Q ss_pred EEEECCCCcEEE-eecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee--ccCCCCeeEEEEecCCCEEEE
Q 002266 219 VMYDRDTAEKLF-SLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR--QKFDDRICCMAWKPIGNALAV 295 (945)
Q Consensus 219 ~vwD~~t~~~~~-~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~--~~~~~~V~~la~spdg~~Las 295 (945)
...|..++.... ............+--+|.|+.-++....+.+..||.....-+.. ......-.++.....++.-.+
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEee
Confidence 998988774322 22221223444555667888888877788898888766543322 233445566666666655544
Q ss_pred EEcCCeEEEEecCC
Q 002266 296 IDVMGKYGVWESVV 309 (945)
Q Consensus 296 ~s~DG~I~iWd~~~ 309 (945)
--..|.|.-+|...
T Consensus 293 ea~agai~rfdpet 306 (353)
T COG4257 293 EADAGAIGRFDPET 306 (353)
T ss_pred ccccCceeecCccc
Confidence 44455566666543
No 417
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.23 E-value=12 Score=42.11 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=89.9
Q ss_pred CCCEEEEEEecCCCEEEEEECCCc------EEEEEcCC--C--eEE-----EEEecCCC--------CEEEEEEccCCCE
Q 002266 103 TLPIRVLAFNKSGSMLAAAGDDEG------IKLINTID--G--SIA-----RVLKGHKG--------PVTGLAFDPNSEY 159 (945)
Q Consensus 103 ~~~V~~l~fspdg~~Lasgs~Dg~------I~iwd~~~--~--~~~-----~~l~~h~~--------~V~~lafspdg~~ 159 (945)
-+.+..|.+.+++..+++.+++|. +..+++.. + ..+ ..+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 345778888876667777778877 66555543 1 111 11121112 3347888778888
Q ss_pred EEEEeCC------CcEEEEEccCCeeeeeecccCC--------CCCCCCCCceEEEEcCCCCEEEEEeC-----CC----
Q 002266 160 LASIDSI------GTVIYWELQSGRELHNLKRVAP--------DIGSDPSSMNVLSWSPDGETLAVPGL-----KN---- 216 (945)
Q Consensus 160 Las~s~D------g~I~iwDl~t~~~i~~~~~~~~--------~~~~~~~~i~~l~~spdg~~La~gs~-----dg---- 216 (945)
+++.-.+ ..|+.++.. |+.+..+..+.. .........-.++++|+|+.|++... |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877666 678888866 666555432211 11234466788999999997666433 21
Q ss_pred -------eEEEEECCC-CcE--EEeecCC------CCCCeEEEEEcCCCCEEEE
Q 002266 217 -------DVVMYDRDT-AEK--LFSLRGD------HVQPICFLSWSPNGKYMAT 254 (945)
Q Consensus 217 -------~I~vwD~~t-~~~--~~~~~~~------h~~~I~~l~fSpdg~~Las 254 (945)
.|..||..+ +.. .+.+... ....|+.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244556554 222 2222221 3467899999999997764
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=3.4 Score=49.64 Aligned_cols=214 Identities=19% Similarity=0.219 Sum_probs=111.6
Q ss_pred EEECCCCCEEEEEEc---------CCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC
Q 002266 23 ILWDQQAHHLVTASS---------SETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 23 vafspdg~~L~t~g~---------~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g 93 (945)
++..|.|.-||+.-+ ..-.|+|++.. +..+...+-.| +.+..+.|+.+. .|++...+|++.+|++..
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~-~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g- 113 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKH-GELIGMGWSDDE-ELICVQKDGTVHVYGLLG- 113 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcC-CCeeeecccCCc-eEEEEeccceEEEeecch-
Confidence 334455555555531 23357777753 32333333334 478899999876 455568999999999753
Q ss_pred eeeee--c--ccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEec---CCCCEEEEEEccCCC---EEEEE
Q 002266 94 EFQTN--I--TRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKG---HKGPVTGLAFDPNSE---YLASI 163 (945)
Q Consensus 94 ~~~~~--l--~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~---h~~~V~~lafspdg~---~Las~ 163 (945)
+.+.. . ......|..+.+..+| +++-..+|.+.+.+-........+.. ..-.-.|-+..+++. .++-.
T Consensus 114 e~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 114 EFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred hhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEee
Confidence 32222 1 1223346666666666 44444566665554322222333322 111112222222211 11111
Q ss_pred e-CCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEE
Q 002266 164 D-SIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICF 242 (945)
Q Consensus 164 s-~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~ 242 (945)
. ..| ..++-..... ..........+.+..+..||+.++|+.-+..|.|.+.+.+..+....+......+...
T Consensus 192 ~~~v~-~~~~q~~~~~------~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~q 264 (829)
T KOG2280|consen 192 DVAVG-LHICQVEESR------VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQ 264 (829)
T ss_pred chhhh-hcccceeccc------ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHh
Confidence 1 000 0111111110 0011111223567789999999999999999999999998888777776433344446
Q ss_pred EEEcCCC
Q 002266 243 LSWSPNG 249 (945)
Q Consensus 243 l~fSpdg 249 (945)
++|.-+.
T Consensus 265 m~Wcgnd 271 (829)
T KOG2280|consen 265 MAWCGND 271 (829)
T ss_pred ceeecCC
Confidence 7776543
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=94.10 E-value=13 Score=42.00 Aligned_cols=155 Identities=11% Similarity=0.081 Sum_probs=86.2
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-e-EEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeee
Q 002266 103 TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG-S-IARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGREL 180 (945)
Q Consensus 103 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~-~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i 180 (945)
...+.++.+.+++.+++++ ..|.+..- ...+ + -......-...++++.+.+++..++++ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4578899999988666554 45544432 1222 2 222222345678999999998877665 4576543223333322
Q ss_pred eeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeec--CCCCCCeEEEEEcCCCCEEEEEECC
Q 002266 181 HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLR--GDHVQPICFLSWSPNGKYMATSSLD 258 (945)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~--~~h~~~I~~l~fSpdg~~Lasgs~D 258 (945)
..... +.. .....+..+.+.+++..++++ .+|.|. .....++.-.... ..-......+.|..+++.+++| ..
T Consensus 249 ~~~~~--~~~-~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 249 SKPII--PEI-TNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred ccccC--Ccc-ccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 22111 100 112346778899988766655 566554 3444333322221 1122467788888777776655 47
Q ss_pred CeEEEEEC
Q 002266 259 RQILIWDV 266 (945)
Q Consensus 259 g~I~IWD~ 266 (945)
|.|..|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877753
No 420
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.02 E-value=15 Score=42.46 Aligned_cols=150 Identities=9% Similarity=0.074 Sum_probs=82.4
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEEEcCCCeE--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeee--
Q 002266 106 IRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI--ARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELH-- 181 (945)
Q Consensus 106 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~--~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~-- 181 (945)
...+..+++|.+++++.....++-|| .+.. ...-......+..+.|.+++..++++ ..|.+. |....+..-.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34456667877776664433223343 2321 11222345678999999998877765 456543 3433443110
Q ss_pred eecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeec--CCCCCCeEEEEEcCCCCEEEEEECCC
Q 002266 182 NLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLR--GDHVQPICFLSWSPNGKYMATSSLDR 259 (945)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~--~~h~~~I~~l~fSpdg~~Lasgs~Dg 259 (945)
.+... ........+..+.|.+++..+++| ..|.+.... ..++.-.... ..-...++.+.|.++++.+++|. +|
T Consensus 317 ~f~~~--~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G 391 (398)
T PLN00033 317 DFEEA--DIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DG 391 (398)
T ss_pred ceeec--ccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-Cc
Confidence 12111 011122457888899888776665 577666553 3333322222 12346788999988877676664 77
Q ss_pred eEEEE
Q 002266 260 QILIW 264 (945)
Q Consensus 260 ~I~IW 264 (945)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76654
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.53 Score=58.37 Aligned_cols=146 Identities=12% Similarity=0.007 Sum_probs=90.9
Q ss_pred cceEEEEEecCCCEEEEEE--cCCcEEEEEcCCCeeee-----ecc------cCCCCEEEEEEecCC-CEEEEEECCCcE
Q 002266 62 DGVTALALSPNSTCLASGS--IDHSVKLYKFPGGEFQT-----NIT------RFTLPIRVLAFNKSG-SMLAAAGDDEGI 127 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs--~Dg~V~iwdl~~g~~~~-----~l~------~~~~~V~~l~fspdg-~~Lasgs~Dg~I 127 (945)
-+|..+...+|+...++.. .+-.|..||+.+-.... .+. ....-..++.|+|.- ...++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3566677777876655543 33478889986432111 111 112235677888743 235666788888
Q ss_pred EEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCC
Q 002266 128 KLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGE 207 (945)
Q Consensus 128 ~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~ 207 (945)
.+..+........--.....+++++|+|.|+.++.|-..|++.-|-.. .+....+.... . .....|.+++|-....
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp--~-~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPP--V-EENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCC--c-CCCcceeEEEEeccee
Confidence 887765432222212345678999999999999999999999988643 33333333321 1 1257789999987766
Q ss_pred EEEE
Q 002266 208 TLAV 211 (945)
Q Consensus 208 ~La~ 211 (945)
++++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 6665
No 422
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.48 E-value=16 Score=41.78 Aligned_cols=224 Identities=9% Similarity=-0.023 Sum_probs=120.6
Q ss_pred cCCCEEEEEEcCCcEEEEEcCCCeeeeecccCC--CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCC-CC
Q 002266 71 PNSTCLASGSIDHSVKLYKFPGGEFQTNITRFT--LPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHK-GP 147 (945)
Q Consensus 71 pdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~--~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~-~~ 147 (945)
-++ .++++..+|.|.-.|..++..+....... ..+..-.+..+|+ |++++.++.++.+|..+|+......... ..
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 355 44555788888888888887543222111 1222222223665 7888888889999998998888777655 11
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCC-CCCCCCCCceEEEEcCCCCEEEEEeC--CCeEEEEECC
Q 002266 148 VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAP-DIGSDPSSMNVLSWSPDGETLAVPGL--KNDVVMYDRD 224 (945)
Q Consensus 148 V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~-~~~~~~~~i~~l~~spdg~~La~gs~--dg~I~vwD~~ 224 (945)
+..-..-.++ .+..++.+|.+...|..++........... .......+ . .....++.+.. ++.+.-+|..
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~----~--~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSP----A--IASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCc----e--eecceEEEecCCCcceEEEEEcc
Confidence 2222222233 344444678999999888887766543221 11111111 1 12234444444 5678888888
Q ss_pred CCcEEEeecCCCCCC---eEEEEEcCC-----CCEEEEEECCCeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEE-
Q 002266 225 TAEKLFSLRGDHVQP---ICFLSWSPN-----GKYMATSSLDRQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAV- 295 (945)
Q Consensus 225 t~~~~~~~~~~h~~~---I~~l~fSpd-----g~~Lasgs~Dg~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las- 295 (945)
++.........+... +........ +.-++.++.++.+.-.|..+++.+-....... ......+.+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~------~~~~~~~~~~ 291 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGS------VQGSGLYTTP 291 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccE------eccCCeeEEe
Confidence 888776643211111 100111111 12235566677788888888887776554311 111111111
Q ss_pred -EEcCCeEEEEecCC
Q 002266 296 -IDVMGKYGVWESVV 309 (945)
Q Consensus 296 -~s~DG~I~iWd~~~ 309 (945)
...||.+.++....
T Consensus 292 ~~~~dG~v~~~~~~~ 306 (370)
T COG1520 292 VAGADGKVYIGFTDN 306 (370)
T ss_pred ecCCCccEEEEEecc
Confidence 12588888886543
No 423
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=0.68 Score=53.13 Aligned_cols=146 Identities=10% Similarity=0.097 Sum_probs=93.8
Q ss_pred CCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCC--E-----EEEEEcCCcEEEEEcCCCee--e
Q 002266 26 DQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST--C-----LASGSIDHSVKLYKFPGGEF--Q 96 (945)
Q Consensus 26 spdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~--~-----Lasgs~Dg~V~iwdl~~g~~--~ 96 (945)
..+...|+..+.....++-.|++.+ .+......|.. |.-+.+.|+.+ . -+.|-.+..|.-||.+-... +
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 3455566666555556666677776 44555555544 77777777543 2 23456778899999762211 1
Q ss_pred eeccc----CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 97 TNITR----FTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 97 ~~l~~----~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
..... ......|.+-..+ .+|++|+.+|.|++||--.......+.+...+|..|..+.+|++|+..+ +..+.+.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeeeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 11111 1234555555555 4799999999999999733333345677889999999999999888655 5667776
Q ss_pred Ecc
Q 002266 173 ELQ 175 (945)
Q Consensus 173 Dl~ 175 (945)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.18 E-value=1.7 Score=49.61 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEEccCC--ee--eeeecccCCCCCCCCCCceEEEEcCCCCEE
Q 002266 146 GPVTGLAFDPNSEYLASID-----------SIG-TVIYWELQSG--RE--LHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209 (945)
Q Consensus 146 ~~V~~lafspdg~~Las~s-----------~Dg-~I~iwDl~t~--~~--i~~~~~~~~~~~~~~~~i~~l~~spdg~~L 209 (945)
.....|+|+++|+++++.. ..+ .|.+++-..+ +. ...+.. .....+.+++.++| |
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-------~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-------ELSMVTGLAVAVGG--V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-------CCCCccceeEecCC--E
Confidence 4457789999998777653 123 6777764432 21 122211 11234678999988 4
Q ss_pred EEEeCCCeEEEE-ECCC-----Cc--EEEe-ecCC---CCCCeEEEEEcCCCCEEEEEECC-------------------
Q 002266 210 AVPGLKNDVVMY-DRDT-----AE--KLFS-LRGD---HVQPICFLSWSPNGKYMATSSLD------------------- 258 (945)
Q Consensus 210 a~gs~dg~I~vw-D~~t-----~~--~~~~-~~~~---h~~~I~~l~fSpdg~~Lasgs~D------------------- 258 (945)
++++.. .|..| |... ++ .+.. +... +......++|.|+|.+.++.+..
T Consensus 85 yV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 444433 45544 5432 12 2222 2221 13457789999999876655421
Q ss_pred CeEEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEE
Q 002266 259 RQILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVI 296 (945)
Q Consensus 259 g~I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~ 296 (945)
|.|.-++..++........-.....++|+++|+++++-
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 44555566554432222222446788999988776553
No 425
>PHA03098 kelch-like protein; Provisional
Probab=92.85 E-value=3.1 Score=50.10 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=71.6
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCeeeeecccCCCCE-EEEEEecCCCEEEEEECC------CcEEEEEcCCCeEEE
Q 002266 72 NSTCLASGSID-----HSVKLYKFPGGEFQTNITRFTLPI-RVLAFNKSGSMLAAAGDD------EGIKLINTIDGSIAR 139 (945)
Q Consensus 72 dg~~Lasgs~D-----g~V~iwdl~~g~~~~~l~~~~~~V-~~l~fspdg~~Lasgs~D------g~I~iwd~~~~~~~~ 139 (945)
++..++.||.+ ..+..||..+.+-. .......+. ...+..-++...+.||.. ..+..||+.+.+-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 56777777765 35778887665422 111111111 111122366777777732 357889987654322
Q ss_pred E--EecCCCCEEEEEEccCCCEEEEEeCCC--------cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEE
Q 002266 140 V--LKGHKGPVTGLAFDPNSEYLASIDSIG--------TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETL 209 (945)
Q Consensus 140 ~--l~~h~~~V~~lafspdg~~Las~s~Dg--------~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~L 209 (945)
. +....... +++ ..++..++.|+.++ .+.+||..+.+-... ... + ........+.+ +++.+
T Consensus 421 ~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~-~---~~r~~~~~~~~--~~~iy 491 (534)
T PHA03098 421 GSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSL-N---FPRINASLCIF--NNKIY 491 (534)
T ss_pred cCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCC-C---cccccceEEEE--CCEEE
Confidence 1 11111111 222 23566666665432 378888877643221 111 1 00111112222 67777
Q ss_pred EEEeCC-----CeEEEEECCCC
Q 002266 210 AVPGLK-----NDVVMYDRDTA 226 (945)
Q Consensus 210 a~gs~d-----g~I~vwD~~t~ 226 (945)
++|+.+ +.|.+||..+.
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCC
Confidence 777654 46888887754
No 426
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.82 E-value=35 Score=43.15 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=116.5
Q ss_pred cCCCCEEEEEEe---c----CCCEEEEEECCCcEEEEEcC------C---------CeEEEEEec---CCCCEEEEEEcc
Q 002266 101 RFTLPIRVLAFN---K----SGSMLAAAGDDEGIKLINTI------D---------GSIARVLKG---HKGPVTGLAFDP 155 (945)
Q Consensus 101 ~~~~~V~~l~fs---p----dg~~Lasgs~Dg~I~iwd~~------~---------~~~~~~l~~---h~~~V~~lafsp 155 (945)
....+|..|+|. . ..++|++-. ...+.|+... . ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 224555544 4456666611 1 122333332 235678999999
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCee----eeeec-ccCCCC---CCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 002266 156 -NSEYLASIDSIGTVIYWELQSGRE----LHNLK-RVAPDI---GSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA 226 (945)
Q Consensus 156 -dg~~Las~s~Dg~I~iwDl~t~~~----i~~~~-~~~~~~---~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~ 226 (945)
+...||+.+..|...||++..... ..... .....+ .........+.|.++-..|++++ ...+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCC
Confidence 456899999999999999922111 11111 111111 01123445799999888888875 567999999877
Q ss_pred cEEE-eecCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC----eeeeeccCC----CCeeEEEEecC-CC-E--
Q 002266 227 EKLF-SLRGDHVQPICFLSWSPN-GKYMATSSLDRQILIWDVGKK----LDIDRQKFD----DRICCMAWKPI-GN-A-- 292 (945)
Q Consensus 227 ~~~~-~~~~~h~~~I~~l~fSpd-g~~Lasgs~Dg~I~IWD~~~~----~~i~~~~~~----~~V~~la~spd-g~-~-- 292 (945)
.... .........|.++.-+|. -.+++.-+ ...|...++... ..+....|. +.-..+..... +. +
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~~~~~~~~ 313 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKVGDTDFVV 313 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEcCCCEEEE
Confidence 6533 222225567888888886 22332222 356888888762 344444552 22122222222 22 2
Q ss_pred EEEEEcCCeEEEEecCCC
Q 002266 293 LAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 293 Las~s~DG~I~iWd~~~~ 310 (945)
+++.-....|.+|.....
T Consensus 314 ~lyS~~~~~v~v~~f~~~ 331 (765)
T PF10214_consen 314 FLYSRLNPLVYVYFFSFS 331 (765)
T ss_pred EEEcCCCCcEEEEEEecC
Confidence 223345566788877543
No 427
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.78 E-value=0.3 Score=37.90 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002266 236 HVQPICFLSWSPNGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 236 h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~ 267 (945)
....|..++|+|...+||.++.+|.|.|+.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999983
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.70 E-value=20 Score=44.62 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------CeE---EEEE--------ecCCCCEEEEEEccC---CC
Q 002266 103 TLPIRVLAFNKSGSMLAAAGDDEGIKLINTID----------GSI---ARVL--------KGHKGPVTGLAFDPN---SE 158 (945)
Q Consensus 103 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~----------~~~---~~~l--------~~h~~~V~~lafspd---g~ 158 (945)
.-.|..|.++++|++++..|..|. .|..+.. |.. .+++ ..+...|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 346889999999999999988764 4433321 111 1111 124467899999996 57
Q ss_pred EEEEEeCCCcEEEEEccCCe
Q 002266 159 YLASIDSIGTVIYWELQSGR 178 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~ 178 (945)
.|++-+.|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997643
No 429
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.46 E-value=20 Score=40.38 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=27.6
Q ss_pred cCCCEEEEEEcC-----------CcEEEEEcCCCeeeeecccCCCCEEEE-EE-ecCCCEEEEEECC
Q 002266 71 PNSTCLASGSID-----------HSVKLYKFPGGEFQTNITRFTLPIRVL-AF-NKSGSMLAAAGDD 124 (945)
Q Consensus 71 pdg~~Lasgs~D-----------g~V~iwdl~~g~~~~~l~~~~~~V~~l-~f-spdg~~Lasgs~D 124 (945)
-++.+.+.|+.+ ..+..||..+..-.............. +. .-++++.+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 356777777653 247778876654322111111111111 12 3477888888754
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.30 E-value=6.1 Score=48.96 Aligned_cols=75 Identities=11% Similarity=0.134 Sum_probs=50.4
Q ss_pred CCEEEEEECCCCCEEEEEEcCCCeEEEEcCCC---------Ccc--cccc-------c-cccccceEEEEEecC---CCE
Q 002266 18 ASFCSILWDQQAHHLVTASSSETTISIHDPLL---------PSN--LPKI-------L-RHHRDGVTALALSPN---STC 75 (945)
Q Consensus 18 ~~V~svafspdg~~L~t~g~~dg~V~IWd~~~---------~~~--~~~~-------l-~~h~~~V~~la~spd---g~~ 75 (945)
-.|..|.++|+|++|+..| ..|.+.+.=... +.. ..++ + ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G-~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVG-PRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEc-CCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3588999999999999998 554433321110 000 0011 1 123457899999995 578
Q ss_pred EEEEEcCCcEEEEEcCCC
Q 002266 76 LASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 76 Lasgs~Dg~V~iwdl~~g 93 (945)
|++-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888899999999999654
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.86 E-value=0.14 Score=61.63 Aligned_cols=134 Identities=17% Similarity=0.244 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCCccccccccccccceEEEEEec-CCCEEEEEEcCCcEEEEEcC--CCeee-----eecccCCCCEEEE
Q 002266 38 SETTISIHDPLLPSNLPKILRHHRDGVTALALSP-NSTCLASGSIDHSVKLYKFP--GGEFQ-----TNITRFTLPIRVL 109 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~sp-dg~~Lasgs~Dg~V~iwdl~--~g~~~-----~~l~~~~~~V~~l 109 (945)
..+.|++-+....-.....+++..+.|-.+.|.. +...+. -.-|.+.||++. .|+.. .........+.-+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 3456666665443222345677788888888854 222222 223678888875 34322 2233344455666
Q ss_pred EEec---CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEE-----------EccCCCEEEEEeCCCcEEEEEc
Q 002266 110 AFNK---SGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLA-----------FDPNSEYLASIDSIGTVIYWEL 174 (945)
Q Consensus 110 ~fsp---dg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~la-----------fspdg~~Las~s~Dg~I~iwDl 174 (945)
.|.| +..++..+-+++.|++..+.+... ..+++|...+..++ .+|||+.++.++.||.++.|-+
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 6665 667788888889988877654332 33445665554443 5899999999999999888865
No 432
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.84 E-value=0.5 Score=36.66 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=29.7
Q ss_pred ccCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 275 QKFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 275 ~~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
......|..++|+|....||.++.+|.|.+|.+
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 345677999999999999999999999999987
No 433
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.79 E-value=17 Score=42.47 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCee--eeeecccCCCCCCCCCCceEEEEcCCC------CEEEEEe--
Q 002266 144 HKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRE--LHNLKRVAPDIGSDPSSMNVLSWSPDG------ETLAVPG-- 213 (945)
Q Consensus 144 h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~--i~~~~~~~~~~~~~~~~i~~l~~spdg------~~La~gs-- 213 (945)
.-...+.|+|.|+|++|++--..|.|++++..++.. +..+.... ..........++++|+- .+|.+..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~--~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV--NDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee--ccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 345668999999998777665469999998655432 11121110 11124667889999874 3444432
Q ss_pred --------CCCeEEEEECCCC-------cEEEe-ecCCCCCCeEEEEEcCCCCEEEEEECC
Q 002266 214 --------LKNDVVMYDRDTA-------EKLFS-LRGDHVQPICFLSWSPNGKYMATSSLD 258 (945)
Q Consensus 214 --------~dg~I~vwD~~t~-------~~~~~-~~~~h~~~I~~l~fSpdg~~Lasgs~D 258 (945)
....|.-|.+... +.+.. +.......-..|.|.|||.++++.+..
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555654321 12221 211111234568899999876666543
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=91.70 E-value=7.9 Score=46.02 Aligned_cols=182 Identities=7% Similarity=-0.067 Sum_probs=86.5
Q ss_pred CCCEEEEEEcCC-----cEEEEEcCCCeeeee--cccCCCCEEEEEEecCCCEEEEEECC--CcEEEEEcCCCeEEE--E
Q 002266 72 NSTCLASGSIDH-----SVKLYKFPGGEFQTN--ITRFTLPIRVLAFNKSGSMLAAAGDD--EGIKLINTIDGSIAR--V 140 (945)
Q Consensus 72 dg~~Lasgs~Dg-----~V~iwdl~~g~~~~~--l~~~~~~V~~l~fspdg~~Lasgs~D--g~I~iwd~~~~~~~~--~ 140 (945)
++.++++|+.++ .+..||..++.-... +........ + ..-++...++||.+ ..+..||..++.-.. .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-G-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-E-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667776542 467788776543221 111111111 2 22467777888754 357888876654322 1
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCe
Q 002266 141 LKGHKGPVTGLAFDPNSEYLASIDSIG---TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKND 217 (945)
Q Consensus 141 l~~h~~~V~~lafspdg~~Las~s~Dg---~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~ 217 (945)
+.........+ .-+|...+.|+.++ .+..||..+.+-...-. .+ ...... ++ ..-+|+..++|+ .
T Consensus 349 l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m~---~~r~~~-~~-~~~~~~IYv~GG---~ 416 (480)
T PHA02790 349 LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--TY---YPHYKS-CA-LVFGRRLFLVGR---N 416 (480)
T ss_pred CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--CC---Cccccc-eE-EEECCEEEEECC---c
Confidence 11111111122 22577777777554 46778877654322111 01 000111 12 223566666664 5
Q ss_pred EEEEECCCCc--EEEeecCCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCe
Q 002266 218 VVMYDRDTAE--KLFSLRGDHVQPICFLSWSPNGKYMATSSLD-----RQILIWDVGKKL 270 (945)
Q Consensus 218 I~vwD~~t~~--~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~D-----g~I~IWD~~~~~ 270 (945)
+.+||..+.+ .+..+.. .......+ .-+|+..+.||.+ ..+..||..+.+
T Consensus 417 ~e~ydp~~~~W~~~~~m~~-~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIY-PRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred eEEecCCCCcEeEcCCCCC-CccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 7788876543 3322221 11112222 2266777777654 245566655543
No 435
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.62 E-value=26 Score=41.60 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=74.2
Q ss_pred cCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCC---EEEEEEccCC
Q 002266 81 IDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGP---VTGLAFDPNS 157 (945)
Q Consensus 81 ~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~---V~~lafspdg 157 (945)
..+.+.++|. .|.....+.........+...++|.+++..+ ..+..+|+ .|+.+......... -..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCC
Confidence 3455666664 4444433332221111166678888877655 77888888 46655554432221 3567788999
Q ss_pred CEEEEEeC-------------CCcEEEEEccCCeeeeeecccCCC--------------------CCCCCCCceEEEEcC
Q 002266 158 EYLASIDS-------------IGTVIYWELQSGRELHNLKRVAPD--------------------IGSDPSSMNVLSWSP 204 (945)
Q Consensus 158 ~~Las~s~-------------Dg~I~iwDl~t~~~i~~~~~~~~~--------------------~~~~~~~i~~l~~sp 204 (945)
++|+.+.. .-.|..+| .+|+.+..+.....- ...+-..++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 98887771 12366666 677666554321100 000113478899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcEEEeecC
Q 002266 205 DGETLAVPGL-KNDVVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 205 dg~~La~gs~-dg~I~vwD~~t~~~~~~~~~ 234 (945)
....|++.++ -..|..+|.++++....+..
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 5555555555 45899999888887776654
No 436
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.17 E-value=27 Score=38.29 Aligned_cols=223 Identities=15% Similarity=0.148 Sum_probs=124.9
Q ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEEcC------CC-eeeeeccc-----CCCCEEEEEEecCCC------------EE
Q 002266 63 GVTALALSPNSTCLASGSIDHSVKLYKFP------GG-EFQTNITR-----FTLPIRVLAFNKSGS------------ML 118 (945)
Q Consensus 63 ~V~~la~spdg~~Lasgs~Dg~V~iwdl~------~g-~~~~~l~~-----~~~~V~~l~fspdg~------------~L 118 (945)
.-+.|+++|.+.+.++....+...+||.. .. .++-.+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888887778899999975 11 12222221 123567777764332 36
Q ss_pred EEEECCCcEEEEEcCCCeE-----EEEEe-cCCCCE-EEEEEcc--CCCEEEEE-eCCCcEEEEEccCCeeee--eeccc
Q 002266 119 AAAGDDEGIKLINTIDGSI-----ARVLK-GHKGPV-TGLAFDP--NSEYLASI-DSIGTVIYWELQSGRELH--NLKRV 186 (945)
Q Consensus 119 asgs~Dg~I~iwd~~~~~~-----~~~l~-~h~~~V-~~lafsp--dg~~Las~-s~Dg~I~iwDl~t~~~i~--~~~~~ 186 (945)
+.+++||+|.-|...-... ...+. ...+.| ..+++.. .+.+|+.+ -..++|.|||-.-..... .+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D- 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID- 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC-
Confidence 7788999999998532221 12222 112333 4555554 35556554 457889999854322110 1111
Q ss_pred CCCCCCCCCCceE--------EEE---cCCCCEEEEEeCCCeEEEEECCCCcEEEeec-CCCCCCeEEEEEcC------C
Q 002266 187 APDIGSDPSSMNV--------LSW---SPDGETLAVPGLKNDVVMYDRDTAEKLFSLR-GDHVQPICFLSWSP------N 248 (945)
Q Consensus 187 ~~~~~~~~~~i~~--------l~~---spdg~~La~gs~dg~I~vwD~~t~~~~~~~~-~~h~~~I~~l~fSp------d 248 (945)
+.+.....+... +.| .+++..=+.|..-|.|-+||+. +..++++. +..-.....|+..| .
T Consensus 183 -P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 -PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred -CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 111111111111 111 1122222223335789999986 67777663 22334556677765 5
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeeccC-------CCCeeEEEEec
Q 002266 249 GKYMATSSLDRQILIWDVGKKLDIDRQKF-------DDRICCMAWKP 288 (945)
Q Consensus 249 g~~Lasgs~Dg~I~IWD~~~~~~i~~~~~-------~~~V~~la~sp 288 (945)
|.+|+---.||+|.+||..++..+..... ...++.|+|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 67777777799999999998877655322 13355666654
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.03 E-value=6.1 Score=48.26 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCEEEEEEcCCCeEEEEcCCCCccccc-----cc--c--------------ccccceEEEEEec--CCCEEEEEEcCCcE
Q 002266 29 AHHLVTASSSETTISIHDPLLPSNLPK-----IL--R--------------HHRDGVTALALSP--NSTCLASGSIDHSV 85 (945)
Q Consensus 29 g~~L~t~g~~dg~V~IWd~~~~~~~~~-----~l--~--------------~h~~~V~~la~sp--dg~~Lasgs~Dg~V 85 (945)
+.+|+++. .+.|.||+.......+. .+ . .....|+.|.... +...|+.|..||.|
T Consensus 49 ~n~LFiA~--~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY--QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE--CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeE
Confidence 77777765 78999998654322111 00 0 0112355555444 44688999999999
Q ss_pred EEEEcCC-------C----ee-e-------eecccCCCCEEEEEEe--cCCCEEEEEECCCcEEEEEcCC--CeEE-EEE
Q 002266 86 KLYKFPG-------G----EF-Q-------TNITRFTLPIRVLAFN--KSGSMLAAAGDDEGIKLINTID--GSIA-RVL 141 (945)
Q Consensus 86 ~iwdl~~-------g----~~-~-------~~l~~~~~~V~~l~fs--pdg~~Lasgs~Dg~I~iwd~~~--~~~~-~~l 141 (945)
.+|.+.+ . +. . .........++.++++ ...++||+++....|.||-... .+.. ..-
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 9997521 1 00 0 0111235578899998 7888899998888888875543 1111 111
Q ss_pred ecCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEcc
Q 002266 142 KGHKGPVTGLAFDPNS---E---YLASIDSIGTVIYWELQ 175 (945)
Q Consensus 142 ~~h~~~V~~lafspdg---~---~Las~s~Dg~I~iwDl~ 175 (945)
..|...|.+|+|-++. . +|++++-.|.+.+|++.
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 1256678899997743 2 78888999999999883
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.88 E-value=8.5 Score=47.06 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=92.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCeeee------eecccCC-----C----CCCCCCCceEEEEcC--CCCEEEEEeCCCeEE
Q 002266 157 SEYLASIDSIGTVIYWELQSGRELH------NLKRVAP-----D----IGSDPSSMNVLSWSP--DGETLAVPGLKNDVV 219 (945)
Q Consensus 157 g~~Las~s~Dg~I~iwDl~t~~~i~------~~~~~~~-----~----~~~~~~~i~~l~~sp--dg~~La~gs~dg~I~ 219 (945)
.++|+++. .+.|.||++....... .+..... . ....+..|+.+.... +...|+++..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666655 5789999876532211 1100000 0 001234455555444 456788899999999
Q ss_pred EEECCC-------C-------------cEEEeecCCCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCC--Ceeee--
Q 002266 220 MYDRDT-------A-------------EKLFSLRGDHVQPICFLSWS--PNGKYMATSSLDRQILIWDVGK--KLDID-- 273 (945)
Q Consensus 220 vwD~~t-------~-------------~~~~~~~~~h~~~I~~l~fS--pdg~~Lasgs~Dg~I~IWD~~~--~~~i~-- 273 (945)
+|.+.+ . ++.+.+. ....++.++++ ...++||+++....|.||-+.. .+...
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 996531 0 0112222 34578889988 7788999998888888886544 22222
Q ss_pred eccCCCCeeEEEEecCC---C---EEEEEEcCCeEEEEec
Q 002266 274 RQKFDDRICCMAWKPIG---N---ALAVIDVMGKYGVWES 307 (945)
Q Consensus 274 ~~~~~~~V~~la~spdg---~---~Las~s~DG~I~iWd~ 307 (945)
...+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 23456789999998753 2 7888999999999887
No 439
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.85 E-value=34 Score=38.99 Aligned_cols=193 Identities=10% Similarity=-0.012 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCCCccccccccc-cccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCC-CCEEEEEEecCC
Q 002266 38 SETTISIHDPLLPSNLPKILRH-HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFT-LPIRVLAFNKSG 115 (945)
Q Consensus 38 ~dg~V~IWd~~~~~~~~~~l~~-h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~-~~V~~l~fspdg 115 (945)
.+|.|.-.|..+.......... ....+..-.+..+|+ |+.++.+|.++.+|..+|+......... ..+..-....+
T Consensus 76 ~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~- 153 (370)
T COG1520 76 RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGD- 153 (370)
T ss_pred CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcC-
Confidence 5666666666555322111111 012222222333665 6777888989999988888776655444 11111122223
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCC---CCEEEEEEccCCCEEEEEeC--CCcEEEEEccCCeeeeeecccCCCC
Q 002266 116 SMLAAAGDDEGIKLINTIDGSIARVLKGHK---GPVTGLAFDPNSEYLASIDS--IGTVIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 116 ~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~---~~V~~lafspdg~~Las~s~--Dg~I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
..+..++.++.+...+..++.......... ..+..-....++ .++.+.. ++.+.-.|..+|......+......
T Consensus 154 ~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~ 232 (370)
T COG1520 154 GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIG 232 (370)
T ss_pred cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccC
Confidence 334444477888888888887766544321 111111111233 3444444 5667777888887766543211111
Q ss_pred CCC---CCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecC
Q 002266 191 GSD---PSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 191 ~~~---~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~ 234 (945)
... ...+..-... .+..++.++.++.+..+|..+++.+..+..
T Consensus 233 ~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 233 RTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 000 0000000011 122235666778899999999999888765
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.78 E-value=2.9 Score=47.89 Aligned_cols=145 Identities=15% Similarity=0.178 Sum_probs=91.2
Q ss_pred cCCCEEEE-EECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEccCC-eeeee-
Q 002266 113 KSGSMLAA-AGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSE-------YLASIDSIGTVIYWELQSG-RELHN- 182 (945)
Q Consensus 113 pdg~~Las-gs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~-------~Las~s~Dg~I~iwDl~t~-~~i~~- 182 (945)
.+..+|.. |+....++-.|++.|+.+..+..|..- -+.|.|..+ .-++|-++..|.-.|.+-. ..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 34444443 445567888899999999999887665 477887532 2334545556666665542 22221
Q ss_pred -ecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 002266 183 -LKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQI 261 (945)
Q Consensus 183 -~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I 261 (945)
.+.... ....++. ......++++++..|.|++||+-.-.....+++ ....|..+..+.+|+++++.+ ...|
T Consensus 555 esKdY~t-----Kn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~-lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 555 ESKDYKT-----KNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPG-LGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eehhccc-----ccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCcc-cccceeeeEeecCCcEEEEee-cceE
Confidence 111111 0111112 222455899999999999999865444444454 677899999999999887776 4567
Q ss_pred EEEECC
Q 002266 262 LIWDVG 267 (945)
Q Consensus 262 ~IWD~~ 267 (945)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 777764
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.67 E-value=4.8 Score=48.67 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=75.0
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECC--------
Q 002266 198 NVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWS--PNGKYMATSSLDRQILIWDVG-------- 267 (945)
Q Consensus 198 ~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fS--pdg~~Lasgs~Dg~I~IWD~~-------- 267 (945)
..+.-+.-++..++.+....+.|||.+.+.......-.....|.++.|. |+|..+++.|..+.|.+|--.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3455555566666666667899999998875444332357899999986 589999999899999998531
Q ss_pred -CCeeeee---ccC-CCCeeEEEEecCCCEEEEEEcCCeEEEEecCCC
Q 002266 268 -KKLDIDR---QKF-DDRICCMAWKPIGNALAVIDVMGKYGVWESVVP 310 (945)
Q Consensus 268 -~~~~i~~---~~~-~~~V~~la~spdg~~Las~s~DG~I~iWd~~~~ 310 (945)
+...+.. ..+ ..+|.+..|.++|..++.+ ...+.|++-..+
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~~ 158 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWLD 158 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCcC
Confidence 1122222 223 3689999999999655443 345888875544
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=4 Score=46.24 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=93.9
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEcCCC--CccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee--
Q 002266 22 SILWDQQAHHLVTASSSETTISIHDPLL--PSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT-- 97 (945)
Q Consensus 22 svafspdg~~L~t~g~~dg~V~IWd~~~--~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~-- 97 (945)
.+-|....+.|++.. .|.+.=|-+.. +.-.+..-....++|.+|.|++|.+.||+--.+.+|.+++....+...
T Consensus 27 gvFfDDaNkqlfavr--SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVR--SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ceeeccCcceEEEEe--cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344665556565553 34444454322 222333334456799999999999999999999999999974333221
Q ss_pred --ecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-eEEEEEecCCCCEEEEEEccCCCEEEEEeC--CCcEEEE
Q 002266 98 --NITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDG-SIARVLKGHKGPVTGLAFDPNSEYLASIDS--IGTVIYW 172 (945)
Q Consensus 98 --~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~~~~~l~~h~~~V~~lafspdg~~Las~s~--Dg~I~iw 172 (945)
..+..+..|....|+.+ .-+|..++.| +-+|..... ..++..+.|...|.-..|.++-+.++.++. ..++.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 22233456888999876 5566666555 556654332 334556678888999999998875544432 3333334
Q ss_pred EccCC
Q 002266 173 ELQSG 177 (945)
Q Consensus 173 Dl~t~ 177 (945)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 44443
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=90.46 E-value=12 Score=44.60 Aligned_cols=143 Identities=11% Similarity=0.053 Sum_probs=69.6
Q ss_pred cCCCEEEEEEcC--CcEEEEEcCCCeeeeecccCCCCEE-EEEEecCCCEEEEEECCC---cEEEEEcCCCeEEEE--Ee
Q 002266 71 PNSTCLASGSID--HSVKLYKFPGGEFQTNITRFTLPIR-VLAFNKSGSMLAAAGDDE---GIKLINTIDGSIARV--LK 142 (945)
Q Consensus 71 pdg~~Lasgs~D--g~V~iwdl~~g~~~~~l~~~~~~V~-~l~fspdg~~Lasgs~Dg---~I~iwd~~~~~~~~~--l~ 142 (945)
-++...+.|+.+ ..+..|+..+++-. .+.....+.. .....-+|+..+.||.++ .+..||..+..-... +.
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 367777777754 45788887654322 2222221111 122233677888887653 467888876543221 11
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC-----Ce
Q 002266 143 GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK-----ND 217 (945)
Q Consensus 143 ~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d-----g~ 217 (945)
........+ .-++.+.+.| |.+.+||..+.+-.. +... + ....... ++ .-+|+..++|+.+ ..
T Consensus 396 ~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~-~~~m-~---~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 396 YPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTL-IDDP-I---YPRDNPE-LI-IVDNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred CccccceEE--EECCEEEEEC---CceEEecCCCCcEeE-cCCC-C---CCccccE-EE-EECCEEEEECCcCCCcccce
Confidence 111111122 2245555555 457788887654322 1111 1 1111111 22 2267777777754 34
Q ss_pred EEEEECCCC
Q 002266 218 VVMYDRDTA 226 (945)
Q Consensus 218 I~vwD~~t~ 226 (945)
|..||..+.
T Consensus 464 ve~Yd~~~~ 472 (480)
T PHA02790 464 IEVYNNRTY 472 (480)
T ss_pred EEEEECCCC
Confidence 566666543
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=90.42 E-value=35 Score=38.42 Aligned_cols=270 Identities=13% Similarity=0.107 Sum_probs=132.0
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccc----cccccceEEEEEecCCCEEEEEEcCCcEEEEEcCC
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKIL----RHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l----~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~ 92 (945)
...+.+|+|.....-++++ .++.|.. ...+....... ......+.++.|.++ ..+++ +..|.|.. .-+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG--~~G~il~--T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVG--SNRTLLE--TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEE--CCCEEEE--EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 4678999998555555544 4554433 22222111111 111234678887653 34444 44454333 2223
Q ss_pred Ceeeeecc---cCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCc
Q 002266 93 GEFQTNIT---RFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVL-KGHKGPVTGLAFDPNSEYLASIDSIGT 168 (945)
Q Consensus 93 g~~~~~l~---~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l-~~h~~~V~~lafspdg~~Las~s~Dg~ 168 (945)
|+....+. ........+.....+..+ .++..|.|.. ....|+.-..+ ..-...+.++.+.|++.+++++. .|.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~ 194 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGN 194 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-Cce
Confidence 33322221 111122222222223333 3344443322 11122221111 22245788999999887666554 464
Q ss_pred EEEEEccCC-eeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCC---CCCCeEEEE
Q 002266 169 VIYWELQSG-RELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGD---HVQPICFLS 244 (945)
Q Consensus 169 I~iwDl~t~-~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~---h~~~I~~l~ 244 (945)
+..- ...+ +.-..... .....++.+.+.++++.++++ ..|.+++=..+.+..-.....+ ....+..+.
T Consensus 195 i~~s-~~~gg~tW~~~~~------~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~ 266 (334)
T PRK13684 195 FYST-WEPGQTAWTPHQR------NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLA 266 (334)
T ss_pred EEEE-cCCCCCeEEEeeC------CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEE
Confidence 4421 1222 21222211 223567889999999887776 4676654334433321111110 224578899
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeeeeec----cCCCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 245 WSPNGKYMATSSLDRQILIWDVGKKLDIDRQ----KFDDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 245 fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~----~~~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
+.|++..++++ .+|.|. .....++.-... ......+.+.|..+++. ...+..|.|..|+-
T Consensus 267 ~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 267 YRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred EcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEecC
Confidence 99988766655 467554 344443332221 22345778888766655 45667888887754
No 445
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.41 E-value=6.8 Score=47.43 Aligned_cols=113 Identities=18% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEc--CCCCEEEEEeCCCeEEEEEC
Q 002266 146 GPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWS--PDGETLAVPGLKNDVVMYDR 223 (945)
Q Consensus 146 ~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s--pdg~~La~gs~dg~I~vwD~ 223 (945)
..+.-+.-+.-++..++-+....+.|||.+.+........ .....|..+.|. |+|+.+++-|..+.|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3444555555555555555556899999988874333221 234667888885 58888888888999999864
Q ss_pred C---------CCcEEEee--cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002266 224 D---------TAEKLFSL--RGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 224 ~---------t~~~~~~~--~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~ 266 (945)
. ++.++..+ ......+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 2 23344433 22123689999999999777666 367888874
No 446
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.40 E-value=46 Score=39.76 Aligned_cols=253 Identities=11% Similarity=0.122 Sum_probs=121.6
Q ss_pred CCCCCEEEEEEcCCCeEEEEcCCCCcc-cccccccc-ccceEEEEEecCC-CEEEEEEcCCcEEEEEcC--CCeeeeecc
Q 002266 26 DQQAHHLVTASSSETTISIHDPLLPSN-LPKILRHH-RDGVTALALSPNS-TCLASGSIDHSVKLYKFP--GGEFQTNIT 100 (945)
Q Consensus 26 spdg~~L~t~g~~dg~V~IWd~~~~~~-~~~~l~~h-~~~V~~la~spdg-~~Lasgs~Dg~V~iwdl~--~g~~~~~l~ 100 (945)
..++..++.+. .+|.+....+..... .....-+. .....++++..+| .+|+.|+.-|.=.++.+. .-+.+..+.
T Consensus 219 ~~~~~~~lL~~-e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQD-EDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEe-CCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 45666777775 899988876654432 11111122 3445667776655 477777765544444433 223333333
Q ss_pred cCCCCEEEEEEecC----CC------EEEEEE---CCCcEEEEEcCCCeE--EEEEecCCC--CEEEEEEcc-CCCEEEE
Q 002266 101 RFTLPIRVLAFNKS----GS------MLAAAG---DDEGIKLINTIDGSI--ARVLKGHKG--PVTGLAFDP-NSEYLAS 162 (945)
Q Consensus 101 ~~~~~V~~l~fspd----g~------~Lasgs---~Dg~I~iwd~~~~~~--~~~l~~h~~--~V~~lafsp-dg~~Las 162 (945)
.-+||.++++.+. .. .|++++ .+|.++++.-.-+-. ........+ .++.+.... ++.+|+.
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 3568999888631 11 555554 466787774211111 112222222 233333222 2457777
Q ss_pred EeCCCcEEEEEcc---CCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCC
Q 002266 163 IDSIGTVIYWELQ---SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQP 239 (945)
Q Consensus 163 ~s~Dg~I~iwDl~---t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~ 239 (945)
+..+. -+++.+. ....+..+.. . .+......+.+-.+. +..++=.+ ...|++.+....+............
T Consensus 377 S~~~~-T~vl~~~~~d~~e~~~e~~~-~-~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFPNE-TRVLQISEGDDGEEVEEVEE-D-GFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSI 450 (504)
T ss_dssp EESSE-EEEEEES----SSEEEEE-----TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS--
T ss_pred EcCCc-eEEEEEecccCCcchhhhhh-c-cCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCe
Confidence 66554 4455553 2333322211 1 121222233333332 44444443 4568899988777776654334456
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec------cCCCCeeEEEEec
Q 002266 240 ICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ------KFDDRICCMAWKP 288 (945)
Q Consensus 240 I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~------~~~~~V~~la~sp 288 (945)
|.+.+. ++.+++.+..++.+.++.+......... .....|.|+...|
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 665555 4456777777899999998776654331 2467788888766
No 447
>PLN02153 epithiospecifier protein
Probab=90.15 E-value=37 Score=38.23 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCeEEE--EEec---CCCCEEEEEEccCCCEEEEEeCC-----------CcEEEE
Q 002266 114 SGSMLAAAGDD-----EGIKLINTIDGSIAR--VLKG---HKGPVTGLAFDPNSEYLASIDSI-----------GTVIYW 172 (945)
Q Consensus 114 dg~~Lasgs~D-----g~I~iwd~~~~~~~~--~l~~---h~~~V~~lafspdg~~Las~s~D-----------g~I~iw 172 (945)
++++++.|+.+ ..+.+||+.+.+-.. .+.. ........+..-++++++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56677777753 247888987654322 1110 11111112222356666666653 147778
Q ss_pred EccCCe
Q 002266 173 ELQSGR 178 (945)
Q Consensus 173 Dl~t~~ 178 (945)
|..+..
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 887654
No 448
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.78 E-value=42 Score=38.39 Aligned_cols=97 Identities=19% Similarity=0.098 Sum_probs=43.8
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCCccccccccc-c-ccceEEEEEecCCCEEEEEEcC-----------CcEEEEEcCCCe
Q 002266 28 QAHHLVTASSSETTISIHDPLLPSNLPKILRH-H-RDGVTALALSPNSTCLASGSID-----------HSVKLYKFPGGE 94 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~-h-~~~V~~la~spdg~~Lasgs~D-----------g~V~iwdl~~g~ 94 (945)
+++..+.+|..+..+.++|+.........+.. . ..........-++.+.+.|+.. ..+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 55555555544556777886532111111111 0 0111111123356677777643 247778876654
Q ss_pred eeeecccCCCCEE-EEEEe-cCCCEEEEEECC
Q 002266 95 FQTNITRFTLPIR-VLAFN-KSGSMLAAAGDD 124 (945)
Q Consensus 95 ~~~~l~~~~~~V~-~l~fs-pdg~~Lasgs~D 124 (945)
-...-........ ..+.. .++++.+.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3221111111111 11222 467788887754
No 449
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.72 E-value=17 Score=42.78 Aligned_cols=271 Identities=15% Similarity=0.063 Sum_probs=134.5
Q ss_pred CCCEEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeee
Q 002266 17 AASFCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQ 96 (945)
Q Consensus 17 ~~~V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~ 96 (945)
...|.++.++-.|.+.+.+ .+| +..||..+++...........+|..+..+-.| .|.+|+.+| |++.+....+..
T Consensus 164 d~~V~aLv~D~~g~lWvgT--~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANGRLWVGT--PDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccCcEEEec--CCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 3568888888888655432 454 56666655432222222222566666555555 466667666 777776553222
Q ss_pred eecccC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002266 97 TNITRF-TLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGH--KGPVTGLAFDPNSEYLASIDSIGTVIYWE 173 (945)
Q Consensus 97 ~~l~~~-~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h--~~~V~~lafspdg~~Las~s~Dg~I~iwD 173 (945)
...... ...|..+.-..+| .+-.|+..|..+.--.+.+-.....+.| ...|.++..+.+|. |-+++.+|.+++-+
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 211111 2223333322233 4555666654432222222112222222 24566777776776 55566666554433
Q ss_pred ccCCeeeeeecccCCCCCCCCCCceEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCE
Q 002266 174 LQSGRELHNLKRVAPDIGSDPSSMNVLSWSP--DGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKY 251 (945)
Q Consensus 174 l~t~~~i~~~~~~~~~~~~~~~~i~~l~~sp--dg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~ 251 (945)
-. -.....+.. .....+..++..| .+..+-.....|.+.+-+-.++..+..........|+.+++..+|+
T Consensus 317 a~-w~~ma~in~------~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~- 388 (671)
T COG3292 317 AD-WKRMAVIND------SDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR- 388 (671)
T ss_pred ch-hhheeeeec------CCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCc-
Confidence 21 111111110 0001111122222 2233333333445556666667666555443446778788877655
Q ss_pred EEEEECCCeEEEEECCC-Ceeeeec--cCCCCeeEEEEecCCCEEEEEEcCCeEE
Q 002266 252 MATSSLDRQILIWDVGK-KLDIDRQ--KFDDRICCMAWKPIGNALAVIDVMGKYG 303 (945)
Q Consensus 252 Lasgs~Dg~I~IWD~~~-~~~i~~~--~~~~~V~~la~spdg~~Las~s~DG~I~ 303 (945)
+-.++...-+..|+..+ +..+... ...+.|+.+.=.|+++ |..|+.+|.++
T Consensus 389 lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 389 LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 44444443466677766 3333332 2356788888888887 77888888654
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.34 E-value=47 Score=37.02 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=53.3
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCee---eeecccCCCCEE-EEEEecCCCEEEEEECC-----CcEEEEEcCCCeE
Q 002266 72 NSTCLASGSID-----HSVKLYKFPGGEF---QTNITRFTLPIR-VLAFNKSGSMLAAAGDD-----EGIKLINTIDGSI 137 (945)
Q Consensus 72 dg~~Lasgs~D-----g~V~iwdl~~g~~---~~~l~~~~~~V~-~l~fspdg~~Lasgs~D-----g~I~iwd~~~~~~ 137 (945)
++.+++.|+.+ ..+..||+.+..- ...+.....+.. ..+..-++++.+.|+.. ..+..||+.+.+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 45666777654 3567777766542 122222221211 11122356777777642 3578888876543
Q ss_pred EE--EEecCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEccCCe
Q 002266 138 AR--VLKGHKGPVTGLAFDPNSEYLASIDSIG----TVIYWELQSGR 178 (945)
Q Consensus 138 ~~--~l~~h~~~V~~lafspdg~~Las~s~Dg----~I~iwDl~t~~ 178 (945)
.. .+... ......+...++++.+.|+.++ .+.+||..+.+
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22 12111 1112222233567777777654 35678887654
No 451
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=87.93 E-value=77 Score=39.03 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=132.8
Q ss_pred CCCCEEEEEECCCCCEEEEEE-cCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEEEE------cCCc----
Q 002266 16 NAASFCSILWDQQAHHLVTAS-SSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLASGS------IDHS---- 84 (945)
Q Consensus 16 h~~~V~svafspdg~~L~t~g-~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Lasgs------~Dg~---- 84 (945)
+...+..+.|+|+|..++..+ ..+....+|-..... .+..+...|....|++++..++... .++.
T Consensus 58 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 133 (620)
T COG1506 58 FGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLF 133 (620)
T ss_pred cCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCceeee
Confidence 346678888999999999886 222223444432221 3344566788889999988877621 1222
Q ss_pred ---EEEEEcCCC-ee-----------eeecccCCCCEEEEEEecCCCEEEEEECCCc-------EEEEEcCCCeEEEEEe
Q 002266 85 ---VKLYKFPGG-EF-----------QTNITRFTLPIRVLAFNKSGSMLAAAGDDEG-------IKLINTIDGSIARVLK 142 (945)
Q Consensus 85 ---V~iwdl~~g-~~-----------~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~-------I~iwd~~~~~~~~~l~ 142 (945)
+.+|....+ .. ..........+....+++++..++....+.. ..++...++ .+..+.
T Consensus 134 ~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 212 (620)
T COG1506 134 VDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELESLT 212 (620)
T ss_pred ecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEEEc
Confidence 334433333 11 1122223445666667776777666654432 223332233 344445
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCC-C-------cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEE-cCCCCEEEEEe
Q 002266 143 GHKGPVTGLAFDPNSEYLASIDSI-G-------TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSW-SPDGETLAVPG 213 (945)
Q Consensus 143 ~h~~~V~~lafspdg~~Las~s~D-g-------~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~-spdg~~La~gs 213 (945)
.....+..+.|.++|+.++..+.. . .+.+++...+........ .. .......+.+ -+++..++++.
T Consensus 213 ~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~ 287 (620)
T COG1506 213 PGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSS--GD---DTRGAWAVEGGLDGDGLLFIAT 287 (620)
T ss_pred CCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeecc--CC---cccCcHHhccccCCCcEEEEEe
Confidence 556668889999999855544322 2 233333122221110000 00 0000001111 12333333433
Q ss_pred C-CCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeeeeeccCCCCeeEEEEec
Q 002266 214 L-KNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSL----DRQILIWDVGKKLDIDRQKFDDRICCMAWKP 288 (945)
Q Consensus 214 ~-dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~----Dg~I~IWD~~~~~~i~~~~~~~~V~~la~sp 288 (945)
. .+...++..................|..+.+ +++.++..-. -..+.+++. .............+....+..
T Consensus 288 ~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 364 (620)
T COG1506 288 DGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR-GEEAKLTSSNNSGLKKVKLAE 364 (620)
T ss_pred cCCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC-CCceEEeecccccccccccCC
Confidence 3 5667777665322222222112245555554 6666655432 246777876 222222222222233333222
Q ss_pred CCCEEEEEEcCC-eEEEEecC
Q 002266 289 IGNALAVIDVMG-KYGVWESV 308 (945)
Q Consensus 289 dg~~Las~s~DG-~I~iWd~~ 308 (945)
-+.+-.-+.|| +|.-|-..
T Consensus 365 -~e~~~~~~~dG~~i~~~l~~ 384 (620)
T COG1506 365 -PEPVTYKSNDGETIHGWLYK 384 (620)
T ss_pred -ceEEEEEcCCCCEEEEEEec
Confidence 23455556666 67777554
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.91 E-value=1.9 Score=48.67 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=93.4
Q ss_pred cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEE-EEE-ecCCC----CEE-EEEEccCCCEEEEEeCCCcEEE
Q 002266 99 ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIA-RVL-KGHKG----PVT-GLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 99 l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~-~~l-~~h~~----~V~-~lafspdg~~Las~s~Dg~I~i 171 (945)
+.....++..+-..|||+.+.+-+. ..+.++++.+.... +.+ ....+ .|+ .+..-..|.-|++.+.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3444567788889999999888765 67888887654321 111 11111 111 1222234666888889998887
Q ss_pred E-EccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCC
Q 002266 172 W-ELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 172 w-Dl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
| |.+.+.. ..+. +.......+..+..+.-..+.+-++.-...|++.++.....+.+..-. ....+..+++||++.
T Consensus 295 WFdvr~~~~-p~l~-h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 295 WFDVRRDGQ-PHLN-HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeecCCC-Ccce-eeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcccc
Confidence 7 5544321 1111 001111112222222222234556666777888777665444332222 234667789999999
Q ss_pred EEEEEECCCeEEEEECCCC
Q 002266 251 YMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 251 ~Lasgs~Dg~I~IWD~~~~ 269 (945)
+|++-. .|.|+++.+++.
T Consensus 371 ~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 371 YLLSED-QGKIRLAQLENR 388 (733)
T ss_pred hheeec-CCceEEEEecCC
Confidence 998875 467888887764
No 453
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.51 E-value=9.5 Score=44.14 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=63.4
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeec
Q 002266 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLK 184 (945)
Q Consensus 105 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~ 184 (945)
.|..+..++.|..++..|.+|.+.++=.+....-..+......|.|=.+.-+ ..+++.+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~--~---------------- 165 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSST--S---------------- 165 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCC--c----------------
Confidence 4677888899999999999986666544443333444444444555444322 22222221 0
Q ss_pred ccCCCCCCCCCCceEEEEcCCC---CEEEEEeCCCeEEEEECCCCcEEEeecC
Q 002266 185 RVAPDIGSDPSSMNVLSWSPDG---ETLAVPGLKNDVVMYDRDTAEKLFSLRG 234 (945)
Q Consensus 185 ~~~~~~~~~~~~i~~l~~spdg---~~La~gs~dg~I~vwD~~t~~~~~~~~~ 234 (945)
-.+..++|||+. ..|.+-+.|+.|++||+.....++...+
T Consensus 166 ----------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 166 ----------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred ----------eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 113447899964 6777778899999999988777655544
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.04 E-value=2.5 Score=44.60 Aligned_cols=71 Identities=24% Similarity=0.448 Sum_probs=47.1
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCC-------CCCCCceEEEEcCCCCEEEEEeCCCeEEEEECC
Q 002266 153 FDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIG-------SDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRD 224 (945)
Q Consensus 153 fspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~-------~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~ 224 (945)
+...+.+|++.+.+|.+++||+.+++.+..-....+... .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 445688999999999999999999876554322212221 2335566777777776666544 5677777655
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.70 E-value=0.1 Score=59.10 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=98.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 002266 148 VTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAV-PGLKNDVVMYDRDTA 226 (945)
Q Consensus 148 V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~-gs~dg~I~vwD~~t~ 226 (945)
.....|-|.+.-++.++.+..+..||-. ++...... .+.....++|..+|..+++ +-..+.+++||+.+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n--------~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN--------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC--------CchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 3456788877778888888899999843 33222221 1233455888887776554 456789999999764
Q ss_pred cE-EEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc-CCCCeeEEEEecCCCEEEEEEcCCe
Q 002266 227 EK-LFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK-FDDRICCMAWKPIGNALAVIDVMGK 301 (945)
Q Consensus 227 ~~-~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~-~~~~V~~la~spdg~~Las~s~DG~ 301 (945)
.. ...+.+.+.... +.|++.+..++.+...|.+.|++..+.+.+...+ |..++++++|.+.+. .+.++.|..
T Consensus 108 ytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred hHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 32 222333233333 7899999999999999999999999887777766 889999999999874 444544433
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.50 E-value=44 Score=37.46 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCc------EEEEEccCC----eeeeeecc---cCCC---CCCCCCCceEEEEcCCCCEE
Q 002266 146 GPVTGLAFDPNSEYLASIDSIGT------VIYWELQSG----RELHNLKR---VAPD---IGSDPSSMNVLSWSPDGETL 209 (945)
Q Consensus 146 ~~V~~lafspdg~~Las~s~Dg~------I~iwDl~t~----~~i~~~~~---~~~~---~~~~~~~i~~l~~spdg~~L 209 (945)
+.+..|.+.+++..+++.+.+|. +..+++... ..+..... .... ........-.+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788999975556666666776 665555431 11111100 0000 00001123467886788877
Q ss_pred EEEeCC------CeEEEEECCCCcEEEee--cC------------CCCCCeEEEEEcCCCCEEEEEEC-----CC-----
Q 002266 210 AVPGLK------NDVVMYDRDTAEKLFSL--RG------------DHVQPICFLSWSPNGKYMATSSL-----DR----- 259 (945)
Q Consensus 210 a~gs~d------g~I~vwD~~t~~~~~~~--~~------------~h~~~I~~l~fSpdg~~Lasgs~-----Dg----- 259 (945)
++.-.+ ..|+.++.. ++.+..+ +. ......-+|+++|+|+.|+++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776556 788888876 5544333 11 13456889999999997666543 22
Q ss_pred ----eEEEE--ECCC-Cee----eeecc------CCCCeeEEEEecCCCEEEEEE-----cCCeEEEEecC
Q 002266 260 ----QILIW--DVGK-KLD----IDRQK------FDDRICCMAWKPIGNALAVID-----VMGKYGVWESV 308 (945)
Q Consensus 260 ----~I~IW--D~~~-~~~----i~~~~------~~~~V~~la~spdg~~Las~s-----~DG~I~iWd~~ 308 (945)
.++|+ |..+ +.. ..... ....|..+.+-+++++|+.== ....++|+.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 14554 4443 212 12222 346788999999998666521 23345555544
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.41 E-value=61 Score=40.97 Aligned_cols=112 Identities=10% Similarity=0.120 Sum_probs=72.1
Q ss_pred CCceEEEEcC-CCCEEEEEeCCCeEEEEECCCCc----EEEeecCCCC----------CCeEEEEEcCCCCEEEEEECCC
Q 002266 195 SSMNVLSWSP-DGETLAVPGLKNDVVMYDRDTAE----KLFSLRGDHV----------QPICFLSWSPNGKYMATSSLDR 259 (945)
Q Consensus 195 ~~i~~l~~sp-dg~~La~gs~dg~I~vwD~~t~~----~~~~~~~~h~----------~~I~~l~fSpdg~~Lasgs~Dg 259 (945)
.+...++|+| +.+.||+-...|...||++.... ....+...+. .....+.|.++-..|+.++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 4566799999 66789999999999999992111 1111111111 2334788988877787776 45
Q ss_pred eEEEEECCCCeeee---eccCCCCeeEEEEecCC--CEEEEEEcCCeEEEEecCC
Q 002266 260 QILIWDVGKKLDID---RQKFDDRICCMAWKPIG--NALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 260 ~I~IWD~~~~~~i~---~~~~~~~V~~la~spdg--~~Las~s~DG~I~iWd~~~ 309 (945)
.+.++|+.+..... .......|..+.-+|.. ..++.. ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 69999998876633 23345678888888873 333332 24466566554
No 458
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.25 E-value=18 Score=43.83 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=57.6
Q ss_pred EEEEEEecCCCEEEEEECCCc-----EEEEEcC---CCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 002266 106 IRVLAFNKSGSMLAAAGDDEG-----IKLINTI---DGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSG 177 (945)
Q Consensus 106 V~~l~fspdg~~Lasgs~Dg~-----I~iwd~~---~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~ 177 (945)
-..+.|-|+|..+++-+.||. |.++... .|..-.. .+....+..++|+-....++.+. ...|.+|-..+-
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccce
Confidence 345899999999999876652 4444321 1221111 12334566778877666565543 467999976554
Q ss_pred eeeeeecccCCCCCCCCCCceEEEEcCCC-CEEEEEeCCCeEEEEE
Q 002266 178 RELHNLKRVAPDIGSDPSSMNVLSWSPDG-ETLAVPGLKNDVVMYD 222 (945)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~i~~l~~spdg-~~La~gs~dg~I~vwD 222 (945)
.--....... ..+.-+.|+|.. +.++..+ .+.|...+
T Consensus 327 hWYLK~e~~i-------p~~s~vkwhpe~~nTl~f~d-~~~I~~V~ 364 (1243)
T COG5290 327 HWYLKVERQI-------PGISYVKWHPEEKNTLLFRD-GERILRVF 364 (1243)
T ss_pred EEEEEEeecC-------CCcceeeeccccCcEEEEec-CCeEEEEE
Confidence 3222222111 234568999943 3344332 34444333
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.97 E-value=4.2 Score=42.82 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=51.1
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeeeeec---------------cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 245 WSPNGKYMATSSLDRQILIWDVGKKLDIDRQ---------------KFDDRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 245 fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~---------------~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
+..++.+|++.+.+|.+++||+.+++.+... .....|..+..+.+|.-|++-+ +|..+.|+...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999998775442 2346788899998887666654 57889998765
Q ss_pred CCC
Q 002266 310 PSS 312 (945)
Q Consensus 310 ~~~ 312 (945)
...
T Consensus 97 ~~W 99 (219)
T PF07569_consen 97 GCW 99 (219)
T ss_pred cee
Confidence 543
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.68 E-value=28 Score=36.24 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=76.4
Q ss_pred CEEEEEeCCCcEEEEEccC--CeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC---C---eEEEEE---CC--
Q 002266 158 EYLASIDSIGTVIYWELQS--GRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK---N---DVVMYD---RD-- 224 (945)
Q Consensus 158 ~~Las~s~Dg~I~iwDl~t--~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d---g---~I~vwD---~~-- 224 (945)
..|+.+...+.|.+|++.. .+....+.. -+.+..+.++..|+||++--.+ . .+++|- ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--------v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST--------VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc--------hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 4555546667899999983 244445533 2567889999999999985332 2 566652 11
Q ss_pred CCcEEE-e--------------------ecCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCee-ee---eccC-
Q 002266 225 TAEKLF-S--------------------LRGDHVQPICFLSWSP-NGKYMATSSLDRQILIWDVGKKLD-ID---RQKF- 277 (945)
Q Consensus 225 t~~~~~-~--------------------~~~~h~~~I~~l~fSp-dg~~Lasgs~Dg~I~IWD~~~~~~-i~---~~~~- 277 (945)
...++. . +.-+-..++.+++..| .|++++.+ ++.+.||.+..... .. ..++
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEech
Confidence 111111 1 1111334667788877 56655554 57899998765443 11 1111
Q ss_pred --------CCCeeEEEEecCCCEEEEEEcCCeEEEEec
Q 002266 278 --------DDRICCMAWKPIGNALAVIDVMGKYGVWES 307 (945)
Q Consensus 278 --------~~~V~~la~spdg~~Las~s~DG~I~iWd~ 307 (945)
.-.+..+++. +.++|..+. -.+++..+
T Consensus 179 ~~l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1124455555 446766654 34555544
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=1.3e+02 Score=39.29 Aligned_cols=153 Identities=12% Similarity=0.149 Sum_probs=91.7
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEe--------cCCCEEEEEEcCCcEEEEEcC
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALS--------PNSTCLASGSIDHSVKLYKFP 91 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~s--------pdg~~Lasgs~Dg~V~iwdl~ 91 (945)
-+.+-+-|.=.+.-.+ .|+.+.+|+..++. ....+.+-...|..+..- |.=++|+..+.--.|.++-+.
T Consensus 81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eeeeccchhhcceEEE--eCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 3444444443333333 47899999998853 355566656666666542 222444444555567776543
Q ss_pred CCee----e-----eecccCCCCEEEEEEecCCCEEEEEECCCcEE--EEEcCCC---e-E----------------EEE
Q 002266 92 GGEF----Q-----TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIK--LINTIDG---S-I----------------ARV 140 (945)
Q Consensus 92 ~g~~----~-----~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~--iwd~~~~---~-~----------------~~~ 140 (945)
-.+. . ..+......|.|+....+|+.+.+|- ||.|+ +|...++ + + +..
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 2111 1 11122345688999778888777664 55443 2222221 1 0 111
Q ss_pred Ee-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 002266 141 LK-GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQS 176 (945)
Q Consensus 141 l~-~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t 176 (945)
+. .+..+|..|+.+..-..+.+-+..|+|.+||+..
T Consensus 237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 22 4678999999998888999999999999999976
No 462
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.63 E-value=78 Score=36.78 Aligned_cols=224 Identities=16% Similarity=0.199 Sum_probs=124.8
Q ss_pred CCEEEEEEcCCcEEEEEcCCCeee----eecccCCCCEEEEEEec-----CCCEEEEEECCCcEEEEEcCC--Ce-----
Q 002266 73 STCLASGSIDHSVKLYKFPGGEFQ----TNITRFTLPIRVLAFNK-----SGSMLAAAGDDEGIKLINTID--GS----- 136 (945)
Q Consensus 73 g~~Lasgs~Dg~V~iwdl~~g~~~----~~l~~~~~~V~~l~fsp-----dg~~Lasgs~Dg~I~iwd~~~--~~----- 136 (945)
...+++|+..|.++||+...+... ..-.....||..+..-. +...||+ -.-..+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999997543311 11123466888777542 2234444 4556777777632 11
Q ss_pred --EEEEEecCC--CCEEEEEEcc----C-CCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCC
Q 002266 137 --IARVLKGHK--GPVTGLAFDP----N-SEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGE 207 (945)
Q Consensus 137 --~~~~l~~h~--~~V~~lafsp----d-g~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~ 207 (945)
.+..+..|. .....+++-| . ..++.+-+.||.+.+|+-+.-...+.+.. . ..++ .+++.+.-.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~----~-llPg---Pl~Y~~~tD 187 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD----F-LLPG---PLCYCPRTD 187 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC----C-CCCc---CeEEeecCC
Confidence 122222332 3334444444 2 35788889999999999665443333322 1 1222 378888888
Q ss_pred EEEEEeCCCeEEEEECCC--------------------Cc---EEEeecCCCCCCeEEE---EEcCCCCEEEEEECCCeE
Q 002266 208 TLAVPGLKNDVVMYDRDT--------------------AE---KLFSLRGDHVQPICFL---SWSPNGKYMATSSLDRQI 261 (945)
Q Consensus 208 ~La~gs~dg~I~vwD~~t--------------------~~---~~~~~~~~h~~~I~~l---~fSpdg~~Lasgs~Dg~I 261 (945)
.|++++.+..+.-|.... ++ +-.++. -...+..+ .++.....+++-+ ...+
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n--lGE~~l~i~v~~~~~~~~~IvvLg-er~L 264 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN--LGEQALDIQVVRFSSSESDIVVLG-ERSL 264 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE--CCceeEEEEEEEcCCCCceEEEEe-cceE
Confidence 899988888888886421 11 111121 12233333 3333333344443 4567
Q ss_pred EEEECCCCeeeeeccCCCCeeEEE-Ee----cCC---CEEEEEEcCCeEEEEecCC
Q 002266 262 LIWDVGKKLDIDRQKFDDRICCMA-WK----PIG---NALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 262 ~IWD~~~~~~i~~~~~~~~V~~la-~s----pdg---~~Las~s~DG~I~iWd~~~ 309 (945)
.+.+- +|.+....+.+....+++ +. ..+ ..+++++.++.+.||....
T Consensus 265 f~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~ 319 (418)
T PF14727_consen 265 FCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT 319 (418)
T ss_pred EEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe
Confidence 77665 455555555544433333 21 122 2588999999999987543
No 463
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=60 Score=35.35 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=116.0
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCe---EE
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGS---IA 138 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~---~~ 138 (945)
+-+..+.++. ++...+..+.-++|.|+.+......+......-..-.|.-.|++..++..+..+.++|+.+.+ ..
T Consensus 87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 3455666654 466666777779999998765443333222212223344468898888867778889987653 33
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeE
Q 002266 139 RVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDV 218 (945)
Q Consensus 139 ~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I 218 (945)
..+......-..++.+ |++-..+..|+-+.+-|+.......-+... .....+.++..+++--+++.. +-.+
T Consensus 165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-----n~g~g~~sv~vsdnr~y~vvy--~egv 235 (370)
T COG5276 165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-----NTGPGTYSVSVSDNRAYLVVY--DEGV 235 (370)
T ss_pred eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-----ecCCceEEEEecCCeeEEEEc--ccce
Confidence 4444444545667665 788888889999999999775432222111 001245666666665555554 4457
Q ss_pred EEEECCCCcEEEeecCCCCCCeEEE-EEcCCCCEEEEEECCCeEEEEECCCC
Q 002266 219 VMYDRDTAEKLFSLRGDHVQPICFL-SWSPNGKYMATSSLDRQILIWDVGKK 269 (945)
Q Consensus 219 ~vwD~~t~~~~~~~~~~h~~~I~~l-~fSpdg~~Lasgs~Dg~I~IWD~~~~ 269 (945)
.+.|..+.+....+.......+.++ .+.-.|++......+.-+.+-|+...
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 7777776664444332122222222 23335666666666666777777553
No 464
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.45 E-value=65 Score=35.71 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=112.6
Q ss_pred CCCEEEEEEcCCCeEEEEcCCCC-ccccccccccccceEEEEEecCCCEEEEEE-cCCcEEEEEcCCCee----------
Q 002266 28 QAHHLVTASSSETTISIHDPLLP-SNLPKILRHHRDGVTALALSPNSTCLASGS-IDHSVKLYKFPGGEF---------- 95 (945)
Q Consensus 28 dg~~L~t~g~~dg~V~IWd~~~~-~~~~~~l~~h~~~V~~la~spdg~~Lasgs-~Dg~V~iwdl~~g~~---------- 95 (945)
++++|+.|+ .+|...+. .... ....+ -.+...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GT-e~Gly~~~-~~~~~~~~~k--l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 12 DGKWLLVGT-EEGLYVLN-ISDQPGTLEK--LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CCcEEEEEe-CCceEEEE-cccCCCCeEE--ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 446788876 67655554 4322 12222 23457899999999777766644 344599999843221
Q ss_pred ------eeecccCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCC--e--EEEEE---e-cCCCCEEEEEEccC--CC
Q 002266 96 ------QTNITRFTLPIRVLAFNKS-GSMLAAAGDDEGIKLINTIDG--S--IARVL---K-GHKGPVTGLAFDPN--SE 158 (945)
Q Consensus 96 ------~~~l~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~--~--~~~~l---~-~h~~~V~~lafspd--g~ 158 (945)
...+ .+........+... ...++++....+|.++..... + ....+ . ....++..+..+++ ..
T Consensus 88 ~~~~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (302)
T smart00036 88 VIRKNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERP 166 (302)
T ss_pred cccccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccce
Confidence 1111 22222333333321 223444555566777644322 1 11110 0 11233434433433 44
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeeecccCCC-CCCCC-CCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCC
Q 002266 159 YLASIDSIGTVIYWELQSGRELHNLKRVAPD-IGSDP-SSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDH 236 (945)
Q Consensus 159 ~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~-~~~~~-~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h 236 (945)
.+..|+..+...++++... .+.......+. ..... .++ ++.--+++.+|++ - +....+.|...+.......-..
T Consensus 167 ~lcvG~~~~~~~~~~~~~~-~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w 242 (302)
T smart00036 167 GICIGSDKGGGDVVQFHES-LVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHW 242 (302)
T ss_pred EEEEEEcCCCCeEEEEeec-ccccccccccccccccccCce-EEEEECCCeEEEE-E-CcEEEEEeCCCCccccceEEEc
Confidence 6777766433455555321 00000000000 00001 222 2333334554444 3 4556666665322211111113
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeeccC
Q 002266 237 VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQKF 277 (945)
Q Consensus 237 ~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~ 277 (945)
.....++++. ..||++-. +..|.|+++.++..++.+.+
T Consensus 243 ~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 3456667776 35666665 45599999999988877654
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.19 E-value=0.87 Score=55.21 Aligned_cols=162 Identities=10% Similarity=0.080 Sum_probs=90.2
Q ss_pred CCCCCEEEEEECCCC-CEEEEEEcCCCeEEEEcCCC--Ccc----ccccccccccceEEEEEec---CCCEEEEEEcCCc
Q 002266 15 GNAASFCSILWDQQA-HHLVTASSSETTISIHDPLL--PSN----LPKILRHHRDGVTALALSP---NSTCLASGSIDHS 84 (945)
Q Consensus 15 gh~~~V~svafspdg-~~L~t~g~~dg~V~IWd~~~--~~~----~~~~l~~h~~~V~~la~sp---dg~~Lasgs~Dg~ 84 (945)
|..+.|-.+.|-... ..++ -.-|.+.||++.- +.. +.+........+.-+.|.| +..++..+-.++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 444556666663221 1111 1235678888642 211 1122222334556666766 5567777778899
Q ss_pred EEEEEcCCCeeeeecccCCCCEEEE-----------EEecCCCEEEEEECCCcEEEEEcC-----CCeEEEEEecCC-CC
Q 002266 85 VKLYKFPGGEFQTNITRFTLPIRVL-----------AFNKSGSMLAAAGDDEGIKLINTI-----DGSIARVLKGHK-GP 147 (945)
Q Consensus 85 V~iwdl~~g~~~~~l~~~~~~V~~l-----------~fspdg~~Lasgs~Dg~I~iwd~~-----~~~~~~~l~~h~-~~ 147 (945)
|++..+.... ...+..|...+.++ .++|||+.++.++.||.++.|.+. ...+.+..+.|. .+
T Consensus 207 i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p 285 (1283)
T KOG1916|consen 207 IRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP 285 (1283)
T ss_pred eeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence 9888765443 24455565554443 368999999999999998888764 223455566676 33
Q ss_pred EEEEEEccCC-------C--EEEEE-eCCCcEEEEEccCCeee
Q 002266 148 VTGLAFDPNS-------E--YLASI-DSIGTVIYWELQSGREL 180 (945)
Q Consensus 148 V~~lafspdg-------~--~Las~-s~Dg~I~iwDl~t~~~i 180 (945)
-.|.-|+... . +++++ ..+..+++|.....++.
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3333343321 1 23333 33456777776554443
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=22 Score=36.73 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=94.1
Q ss_pred CCCEEEEEEc--CCcEEEEEcCCCeeeeecccCCCCEEEEEEecCCCEE-EEEECCCcEEEEEcCCCeEEEEEecCCCCE
Q 002266 72 NSTCLASGSI--DHSVKLYKFPGGEFQTNITRFTLPIRVLAFNKSGSML-AAAGDDEGIKLINTIDGSIARVLKGHKGPV 148 (945)
Q Consensus 72 dg~~Lasgs~--Dg~V~iwdl~~g~~~~~l~~~~~~V~~l~fspdg~~L-asgs~Dg~I~iwd~~~~~~~~~l~~h~~~V 148 (945)
+|.++.+.+. ...|++|++.+|+.+....-....+..=-...-|.++ +..-.+|.-.++|..+-+.+..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4555655543 3579999999888664332111111110011112222 223357777888888777665554 23444
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 002266 149 TGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEK 228 (945)
Q Consensus 149 ~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~ 228 (945)
+.++. +++-|+.++...+++.-|..+-....++..... +..-..++.+.|- +|...|---....|...+..+|+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~--g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDD--GVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEEC--Ceecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 55554 455577766666777777665433333221100 0011223344443 555555555555666667777665
Q ss_pred EEeec-----------CCCCCCeEEEEEcCCC-CEEEEE
Q 002266 229 LFSLR-----------GDHVQPICFLSWSPNG-KYMATS 255 (945)
Q Consensus 229 ~~~~~-----------~~h~~~I~~l~fSpdg-~~Lasg 255 (945)
+..+. ..+..-.+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 54332 2344567889999976 566665
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.19 E-value=0.13 Score=58.25 Aligned_cols=148 Identities=17% Similarity=0.099 Sum_probs=100.3
Q ss_pred EEEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCCEEEE-EEcCCcEEEEEcCCCeeeee
Q 002266 20 FCSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNSTCLAS-GSIDHSVKLYKFPGGEFQTN 98 (945)
Q Consensus 20 V~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~~Las-gs~Dg~V~iwdl~~g~~~~~ 98 (945)
-....|-|.+..++.+| .+..|..||-.. +..... ...+....++|..++..++. +-..+.+.+|++.+......
T Consensus 37 pi~~~w~~e~~nlavac-a~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVAC-ANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cceeeEecCCCceehhh-hhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34456888888888887 788888898432 211111 22455678889888866554 45678999999865422111
Q ss_pred cccCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002266 99 ITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYW 172 (945)
Q Consensus 99 l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iw 172 (945)
-.+....-.-+.|++.+..++.+...|.+.|++..+.+.+...-.|...+++++|.+.+. .+.++.|..+.+-
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHh
Confidence 111122222378999999999999999999999887776666656999999999998764 5555666555443
No 468
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.01 E-value=87 Score=36.79 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCeE--EEEE----e-cCCCCEEEEEEccCC------CEEEEEe------
Q 002266 104 LPIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSI--ARVL----K-GHKGPVTGLAFDPNS------EYLASID------ 164 (945)
Q Consensus 104 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~--~~~l----~-~h~~~V~~lafspdg------~~Las~s------ 164 (945)
...+.|+|.|+|++|++--..|.|++++..++.. +..+ . ...+....|+++|+- .+|+++.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 3568899999998776655579999998655432 1111 1 135778999999874 2444432
Q ss_pred ----CCCcEEEEEccCC--e---eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCC
Q 002266 165 ----SIGTVIYWELQSG--R---ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLK 215 (945)
Q Consensus 165 ----~Dg~I~iwDl~t~--~---~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~d 215 (945)
....|.-|.+... . ....+.. .+.... ..-..|+|.|||.++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~-lP~~~~--H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAG-LPAGND--HNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEec-CCCCCC--cCCceEEECCCCcEEEEECCC
Confidence 1223444554321 1 1111111 111112 234568899999866655433
No 469
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.62 E-value=68 Score=35.27 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=87.6
Q ss_pred cEEEEEcCCCeeeeeccc------CCCCEEEEEEecCCC----EEEEEEC--CCcEEEEEcCCCeEEEEEecC-------
Q 002266 84 SVKLYKFPGGEFQTNITR------FTLPIRVLAFNKSGS----MLAAAGD--DEGIKLINTIDGSIARVLKGH------- 144 (945)
Q Consensus 84 ~V~iwdl~~g~~~~~l~~------~~~~V~~l~fspdg~----~Lasgs~--Dg~I~iwd~~~~~~~~~l~~h------- 144 (945)
.|.+||+.+++.++.+.- ....+..+.+..... .+|.-++ .+.|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 455666666665544321 244577787776221 3333333 347999999988765554321
Q ss_pred ------------CCCEEEEEEcc---CCCEEEEEeCCCcEEEEEccCC-----eeeeee--cccCCCCCCCCCCceEEEE
Q 002266 145 ------------KGPVTGLAFDP---NSEYLASIDSIGTVIYWELQSG-----RELHNL--KRVAPDIGSDPSSMNVLSW 202 (945)
Q Consensus 145 ------------~~~V~~lafsp---dg~~Las~s~Dg~I~iwDl~t~-----~~i~~~--~~~~~~~~~~~~~i~~l~~ 202 (945)
...+.+++.+| ++++|+.+...+ -.+|.+.+. ...... .......+........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 22356666655 555666554333 233333321 000000 0000000111134456889
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC----c-EEEeecCCCCCCeEEEEEcC--CCCEEEEE
Q 002266 203 SPDGETLAVPGLKNDVVMYDRDTA----E-KLFSLRGDHVQPICFLSWSP--NGKYMATS 255 (945)
Q Consensus 203 spdg~~La~gs~dg~I~vwD~~t~----~-~~~~~~~~h~~~I~~l~fSp--dg~~Lasg 255 (945)
+++|..+++--..+.|..|+..+. . .+.......-..+..+.+.+ +|.+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999998888888999999999861 1 12111111245778899988 66655544
No 470
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.32 E-value=11 Score=43.53 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=84.5
Q ss_pred ECCCCCEEEEEEcCCCeEEEEcCCCCccccccccccccceEEEEEecCCC-------EEEEEEcCCcEEEEEcCC-Ceee
Q 002266 25 WDQQAHHLVTASSSETTISIHDPLLPSNLPKILRHHRDGVTALALSPNST-------CLASGSIDHSVKLYKFPG-GEFQ 96 (945)
Q Consensus 25 fspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~h~~~V~~la~spdg~-------~Lasgs~Dg~V~iwdl~~-g~~~ 96 (945)
...+...|++.|+....++-.|+..+ .+......|..- -+.|.|+.+ .-++|-.+..|.-.|.+- |..+
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 34455666666555556666666655 344444444433 566666431 123344444455445432 2111
Q ss_pred eecccCCC-----CEEEEEEecCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002266 97 TNITRFTL-----PIRVLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIY 171 (945)
Q Consensus 97 ~~l~~~~~-----~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~i 171 (945)
. ...... ...+..-. ...++|+|+..|-|++||--.-.....+.+....|..|..+.+|+++++.|. ..+.+
T Consensus 552 ~-v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL 628 (776)
T COG5167 552 K-VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLL 628 (776)
T ss_pred e-eeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEE
Confidence 1 111111 22222222 4468999999999999997554444556777789999999999998887664 56777
Q ss_pred EEcc
Q 002266 172 WELQ 175 (945)
Q Consensus 172 wDl~ 175 (945)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7764
No 471
>PLN02193 nitrile-specifier protein
Probab=84.21 E-value=97 Score=36.69 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=91.3
Q ss_pred CCCEEEEEEcC-------CcEEEEEcCCCeeeeeccc---CCC--CEEEEEEecCCCEEEEEECC-----CcEEEEEcCC
Q 002266 72 NSTCLASGSID-------HSVKLYKFPGGEFQTNITR---FTL--PIRVLAFNKSGSMLAAAGDD-----EGIKLINTID 134 (945)
Q Consensus 72 dg~~Lasgs~D-------g~V~iwdl~~g~~~~~l~~---~~~--~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~ 134 (945)
++.+++.|+.+ ..+.+||+.+.+-. .+.. ... ........-++.+++.|+.+ ..+.+||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~-~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS-ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEE-eCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 34555666642 24778887765432 2211 111 11111222356677777654 3588899887
Q ss_pred CeEEEEEec----CCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCC
Q 002266 135 GSIARVLKG----HKGPVTGLAFDPNSEYLASIDSIG-----TVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPD 205 (945)
Q Consensus 135 ~~~~~~l~~----h~~~V~~lafspdg~~Las~s~Dg-----~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spd 205 (945)
.+-...-.. ....-.+++. -++++++.|+.++ .+..||+.+.+-.. +... .......... .++. -+
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~-~~~~~~R~~~-~~~~-~~ 328 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTP-GDSFSIRGGA-GLEV-VQ 328 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCC-CCCCCCCCCc-EEEE-EC
Confidence 653321111 1111112222 2456666666543 46778877654321 1110 0000001111 1222 25
Q ss_pred CCEEEEEeCC----CeEEEEECCCCcE--EEeecC-CCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEE
Q 002266 206 GETLAVPGLK----NDVVMYDRDTAEK--LFSLRG-DHVQPICFLSWSPNGKYMATSSLD--------------RQILIW 264 (945)
Q Consensus 206 g~~La~gs~d----g~I~vwD~~t~~~--~~~~~~-~h~~~I~~l~fSpdg~~Lasgs~D--------------g~I~IW 264 (945)
++.+++++.+ ..+.+||+.+.+- +..... +......+ +..-++++++.|+.. ..+.+|
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 7777777655 4689999887543 222110 01111111 122356777777743 247888
Q ss_pred ECCCCeee
Q 002266 265 DVGKKLDI 272 (945)
Q Consensus 265 D~~~~~~i 272 (945)
|+.+.+-.
T Consensus 408 D~~t~~W~ 415 (470)
T PLN02193 408 DTETLQWE 415 (470)
T ss_pred EcCcCEEE
Confidence 88776544
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.21 E-value=71 Score=35.14 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=93.2
Q ss_pred cEEEEEcCCCeEEEEEec------CCCCEEEEEEccCC-----CEEEEE-eCCCcEEEEEccCCeeeeeecccCCCCC--
Q 002266 126 GIKLINTIDGSIARVLKG------HKGPVTGLAFDPNS-----EYLASI-DSIGTVIYWELQSGRELHNLKRVAPDIG-- 191 (945)
Q Consensus 126 ~I~iwd~~~~~~~~~l~~------h~~~V~~lafspdg-----~~Las~-s~Dg~I~iwDl~t~~~i~~~~~~~~~~~-- 191 (945)
.|.+||+.+++.++++.- ..+.+..+.++... .+++.+ +..+.|.|+|+.+++..+..........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577788888887776642 24567888887732 244444 3346899999999877655543211100
Q ss_pred ----------CCCCCceEEEEcC---CCCEEEEEeCCC-eEEEEEC---CCCc---------EEEeecCCCCCCeEEEEE
Q 002266 192 ----------SDPSSMNVLSWSP---DGETLAVPGLKN-DVVMYDR---DTAE---------KLFSLRGDHVQPICFLSW 245 (945)
Q Consensus 192 ----------~~~~~i~~l~~sp---dg~~La~gs~dg-~I~vwD~---~t~~---------~~~~~~~~h~~~I~~l~f 245 (945)
.....+..++.+| +|+.|......+ .++-... ++.. .+..+ +........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 0112355566655 666777665433 2333321 1111 11111 111235667889
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC------eeeeeccC-CCCeeEEEEec--CCCEEEEE
Q 002266 246 SPNGKYMATSSLDRQILIWDVGKK------LDIDRQKF-DDRICCMAWKP--IGNALAVI 296 (945)
Q Consensus 246 Spdg~~Lasgs~Dg~I~IWD~~~~------~~i~~~~~-~~~V~~la~sp--dg~~Las~ 296 (945)
+++|.++++--..+.|..|+..+. ..+..-.. -..+.++.+.+ +|.+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999999999888999999999872 12222111 24567888887 66544433
No 473
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.12 E-value=35 Score=39.08 Aligned_cols=127 Identities=12% Similarity=0.213 Sum_probs=78.6
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEE
Q 002266 143 GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 143 ~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD 222 (945)
...++|.++.|++|.+.||+--.+..|.+++....+....... ........|...+|+.+ .-+|.-+ +..+-+|-
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~---~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~ 138 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ---ECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQ 138 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH---HhccCcceeEEEEEecC-eeEEEEe-cCCeEEEE
Confidence 3567999999999999999999999999998744332211111 01122345778999876 4455544 34466666
Q ss_pred CCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeeee
Q 002266 223 RDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSS--LDRQILIWDVGKKLDIDR 274 (945)
Q Consensus 223 ~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs--~Dg~I~IWD~~~~~~i~~ 274 (945)
....+....+...|.-.|.-..|.++.+.+.-++ ..+.+.=+-++++.....
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~kL 192 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMSKL 192 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceeeec
Confidence 5544332222223777899999999877644333 344555555555544433
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.99 E-value=23 Score=33.98 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCc--------EEEeecCCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECC
Q 002266 201 SWSPDGETLAVPGLKNDVVMYDRDTAE--------KLFSLRGDHVQPICFLSWSP-----NGKYMATSSLDRQILIWDVG 267 (945)
Q Consensus 201 ~~spdg~~La~gs~dg~I~vwD~~t~~--------~~~~~~~~h~~~I~~l~fSp-----dg~~Lasgs~Dg~I~IWD~~ 267 (945)
.|......|++++..|.|.|++..... .+..+. -...|++++-.+ ....|+.|+ ...|..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 455555578888888999999865332 233332 345777776433 345677776 5679999999
Q ss_pred CCeeeeeccCCCCeeEEEEecCC---CEEEEEEcCCeEEEEe
Q 002266 268 KKLDIDRQKFDDRICCMAWKPIG---NALAVIDVMGKYGVWE 306 (945)
Q Consensus 268 ~~~~i~~~~~~~~V~~la~spdg---~~Las~s~DG~I~iWd 306 (945)
...-+........|.++.+-.-+ .-|+..+.+..|.-||
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 98888888888889988885422 3455555555555554
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.96 E-value=73 Score=35.05 Aligned_cols=200 Identities=14% Similarity=0.162 Sum_probs=111.6
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEcC------CC-eEEEEEec-----CCCCEEEEEEccCCC------------EE
Q 002266 105 PIRVLAFNKSGSMLAAAGDDEGIKLINTI------DG-SIARVLKG-----HKGPVTGLAFDPNSE------------YL 160 (945)
Q Consensus 105 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~------~~-~~~~~l~~-----h~~~V~~lafspdg~------------~L 160 (945)
.-+.|+++|.+.+-++....+...+||.. .. .++.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35679999988877777778889999986 11 22333331 234577888875333 25
Q ss_pred EEEeCCCcEEEEEccCCee-----eeeecccCCCCCCCCCCceEEEEcC--CCCEEEEE-eCCCeEEEEECCCCcEEEee
Q 002266 161 ASIDSIGTVIYWELQSGRE-----LHNLKRVAPDIGSDPSSMNVLSWSP--DGETLAVP-GLKNDVVMYDRDTAEKLFSL 232 (945)
Q Consensus 161 as~s~Dg~I~iwDl~t~~~-----i~~~~~~~~~~~~~~~~i~~l~~sp--dg~~La~g-s~dg~I~vwD~~t~~~~~~~ 232 (945)
+.++.||+|.-|...-+.. ...+.. .........+++.. .+.+|..+ -..++|.|||-. ..++. +
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~-----s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~-~ 176 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDA-----SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPP-L 176 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEcc-----CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-ccccc-C
Confidence 7788999999998533222 111110 01112223455554 34555544 357889999865 33221 1
Q ss_pred cCCCCCCeEEEEEcC------CCCEEE-------------EEECCCeEEEEECCCCeeeeeccCC---CCeeEEEEec--
Q 002266 233 RGDHVQPICFLSWSP------NGKYMA-------------TSSLDRQILIWDVGKKLDIDRQKFD---DRICCMAWKP-- 288 (945)
Q Consensus 233 ~~~h~~~I~~l~fSp------dg~~La-------------sgs~Dg~I~IWD~~~~~~i~~~~~~---~~V~~la~sp-- 288 (945)
.+....+-.-.-|.| .+++++ .+..-|.|-+||+... .+++..+. ...+.|+..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhh
Confidence 111111100001111 222222 2333478999997654 44443333 4567888766
Q ss_pred ----CCCEEEEEEcCCeEEEEecCCCCC
Q 002266 289 ----IGNALAVIDVMGKYGVWESVVPSS 312 (945)
Q Consensus 289 ----dg~~Las~s~DG~I~iWd~~~~~~ 312 (945)
.+.+|+---.||+|..||...+..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCce
Confidence 455666666799999999877664
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.60 E-value=93 Score=35.99 Aligned_cols=145 Identities=12% Similarity=0.138 Sum_probs=80.1
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCeee-eeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 002266 148 VTGLAFDPNSEYLASIDSIGTVIYWELQSGREL-HNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTA 226 (945)
Q Consensus 148 V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i-~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~ 226 (945)
...+..++++.+++++.....++-||- +... ..+.. .....+..+.|.++|..++++ ..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~------~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNR------ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecC------CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCC
Confidence 344556677776666554322223332 2211 11111 123457789999999888776 4565543 33334
Q ss_pred c-----EEEeecCC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeee----ccCCCCeeEEEEecCCCEEEEE
Q 002266 227 E-----KLFSLRGD-HVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDR----QKFDDRICCMAWKPIGNALAVI 296 (945)
Q Consensus 227 ~-----~~~~~~~~-h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~----~~~~~~V~~la~spdg~~Las~ 296 (945)
. ........ ....+..+.|.+++..+++| ..|.+.... ..++.-.. ......++.+.|.++++ ....
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~ 387 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL 387 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEE
Confidence 3 22222211 22458899999888766665 467666553 33333222 22346788999977754 4455
Q ss_pred EcCCeEEEE
Q 002266 297 DVMGKYGVW 305 (945)
Q Consensus 297 s~DG~I~iW 305 (945)
+.+|.|..|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 677877665
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=45 Score=34.51 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=95.8
Q ss_pred CCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEccCCeeeeeecccCCCC
Q 002266 114 SGSMLAAAGDD--EGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYL-ASIDSIGTVIYWELQSGRELHNLKRVAPDI 190 (945)
Q Consensus 114 dg~~Lasgs~D--g~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~L-as~s~Dg~I~iwDl~t~~~i~~~~~~~~~~ 190 (945)
+|.++.+.+.- ..|++||+.+++.+..-.-....+..=-...-+.++ ...=.+|.-.++|.++-+++..+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence 55666666543 369999999888765543221111110011112322 22345788888998877666554321
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002266 191 GSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKL----FSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDV 266 (945)
Q Consensus 191 ~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~----~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~ 266 (945)
+.-. ....|++.|+.+.....++.-|.++.... .++.+..-..++.+.|- +|...|-.-.+..|...+.
T Consensus 131 ----GeGW--gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 131 ----GEGW--GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred ----Ccce--eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 1112 23346666777666667777777664432 33333222334445553 5666665555666777777
Q ss_pred CCCeeeeecc-------------CCCCeeEEEEecCCCE-EEEE
Q 002266 267 GKKLDIDRQK-------------FDDRICCMAWKPIGNA-LAVI 296 (945)
Q Consensus 267 ~~~~~i~~~~-------------~~~~V~~la~spdg~~-Las~ 296 (945)
.+++++..+. +....+.+++.|++.. +++|
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7777765532 2345688999998754 4444
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=53 Score=41.44 Aligned_cols=237 Identities=14% Similarity=0.026 Sum_probs=107.0
Q ss_pred ECCCCCEEEEEEcCCCeEEEEcCCCCccc--ccc------c--cccccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCe
Q 002266 25 WDQQAHHLVTASSSETTISIHDPLLPSNL--PKI------L--RHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGE 94 (945)
Q Consensus 25 fspdg~~L~t~g~~dg~V~IWd~~~~~~~--~~~------l--~~h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~ 94 (945)
+...|..+++|+ .+|.+.+|.+...... ... + ..+..+|..+...+.-.++++ ..|+.|.++++.+-+
T Consensus 22 va~~~~~l~vGt-~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 22 VAAYGNHLYVGT-RDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE 99 (877)
T ss_pred HHHhCCEEEEEc-CCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence 445688888887 9999999987544211 111 1 113467777766665444444 446778888887655
Q ss_pred eeeecccCCCCEEEEEE--ec-C-C--CEEEEEEC-CC-cEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002266 95 FQTNITRFTLPIRVLAF--NK-S-G--SMLAAAGD-DE-GIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSI 166 (945)
Q Consensus 95 ~~~~l~~~~~~V~~l~f--sp-d-g--~~Lasgs~-Dg-~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~D 166 (945)
......+..+. ...++ .+ + | .+.++.+. .. ....|+-+++.....--+-......++|. +..+.++-.+
T Consensus 100 ~~~~~~~~Kg~-~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~ 176 (877)
T KOG2063|consen 100 PVPSGTRLKGA-SLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKK 176 (877)
T ss_pred ccccccccccc-eeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecc
Confidence 43222222211 11111 01 1 1 22222221 11 12234443343332222222233333332 3333333332
Q ss_pred CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEc
Q 002266 167 GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWS 246 (945)
Q Consensus 167 g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fS 246 (945)
....+|.-.++. ...+. .........-..++-..++..+++| .|+...+.|.. |.....-.-........+.+
T Consensus 177 ~~~ii~~~~~~~-~~~~~---~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~ws~~P~~v~~- 249 (877)
T KOG2063|consen 177 SYYIINNTSKGV-GPNLF---PSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLN-GIIAQRGTLVWSEVPLSVVV- 249 (877)
T ss_pred eeEEEecCCCcc-cccee---eeccccccCCCeEEEecCCceEEEc-cCceEEEEecC-CcccCCCceEecccchhhcc-
Confidence 333333333331 11110 0000001111234445566566665 57777777754 32210000000011111211
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002266 247 PNGKYMATSSLDRQILIWDVGKKLDIDRQ 275 (945)
Q Consensus 247 pdg~~Lasgs~Dg~I~IWD~~~~~~i~~~ 275 (945)
+..|+++-+ ++.|.||+..++..++.+
T Consensus 250 -~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 250 -ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred -cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 345666665 559999999999777776
No 479
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.97 E-value=81 Score=39.81 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEee----cC--------------CCCCCeEEEEEcCCCCEEEEEE
Q 002266 195 SSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSL----RG--------------DHVQPICFLSWSPNGKYMATSS 256 (945)
Q Consensus 195 ~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~----~~--------------~h~~~I~~l~fSpdg~~Lasgs 256 (945)
..|.+++...-+.+++....||.|.++|..+++.+... .. +...++..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 44566666667788999999999999999998665444 11 0111334578999998888888
Q ss_pred CCCeEE
Q 002266 257 LDRQIL 262 (945)
Q Consensus 257 ~Dg~I~ 262 (945)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888765
No 480
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.80 E-value=10 Score=43.73 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=58.5
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEc----CC-------------
Q 002266 143 GHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWS----PD------------- 205 (945)
Q Consensus 143 ~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~s----pd------------- 205 (945)
.....+.+|+.+|.+.+.++...=|.|.++|+.++..++.+++.... .+.|. ..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA---------qc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA---------QCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc---------eEEEEEeecccccccccccccCCC
Confidence 34456889999999999999888899999999999888877754211 11111 00
Q ss_pred ---CCE-EEEEeCCCeEEEEECCCCcEEEeec
Q 002266 206 ---GET-LAVPGLKNDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 206 ---g~~-La~gs~dg~I~vwD~~t~~~~~~~~ 233 (945)
..+ ++..-..|.|.||.++++..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 112 2335568899999999998887765
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.58 E-value=67 Score=38.15 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEE
Q 002266 123 DDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSW 202 (945)
Q Consensus 123 ~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~ 202 (945)
....+.++|. .|.....+.........+...++|.+++... ..+..+|+- |+.+............| ..+..
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H----HD~~~ 197 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH----HDIDE 197 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-----S-EEE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc----cccEE
Confidence 4456677775 4555555543222222266778898887655 788888874 55555543321111111 34778
Q ss_pred cCCCCEEEEEeC-------------CCeEEEEECCCCcEEEeecC-CC-------------------------CCCeEEE
Q 002266 203 SPDGETLAVPGL-------------KNDVVMYDRDTAEKLFSLRG-DH-------------------------VQPICFL 243 (945)
Q Consensus 203 spdg~~La~gs~-------------dg~I~vwD~~t~~~~~~~~~-~h-------------------------~~~I~~l 243 (945)
.|+|++|+.+.. ...|..+| .+|+.+..+.. .| --.++++
T Consensus 198 l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi 276 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSI 276 (477)
T ss_dssp -TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEE
T ss_pred CCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCcc
Confidence 899999988772 22466666 66665544211 00 0247889
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCCeeeeeccC
Q 002266 244 SWSP-NGKYMATSSLDRQILIWDVGKKLDIDRQKF 277 (945)
Q Consensus 244 ~fSp-dg~~Lasgs~Dg~I~IWD~~~~~~i~~~~~ 277 (945)
.+.+ ++.+|+++-.-..|...|..++++....+.
T Consensus 277 ~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 277 DYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp EEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred EEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 9998 566666665566899999888888766543
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.36 E-value=1.4e+02 Score=36.54 Aligned_cols=167 Identities=13% Similarity=0.167 Sum_probs=89.8
Q ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEEcCCCeeee--eccc-CCCCEEEEEEec------CCCEEEEEEC-C---CcE
Q 002266 61 RDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQT--NITR-FTLPIRVLAFNK------SGSMLAAAGD-D---EGI 127 (945)
Q Consensus 61 ~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g~~~~--~l~~-~~~~V~~l~fsp------dg~~Lasgs~-D---g~I 127 (945)
.+.|.++.|.++++.+++...+|.|.+|++..+.... .+.. +...+..-.|.+ ...++++.+. . -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5788999999999999999999999999993332211 1111 111111112222 1234444443 2 246
Q ss_pred EEEEcC-CCeEEEEEe---cCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEE
Q 002266 128 KLINTI-DGSIARVLK---GHKGPVTGLAFDP-NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSW 202 (945)
Q Consensus 128 ~iwd~~-~~~~~~~l~---~h~~~V~~lafsp-dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~ 202 (945)
+++.+. ....+..+. .+........|+- +|.+... .+++|.+|++...+...++.... .+......+ +.+
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~-ii~~~~~~~--vSl 283 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPS-IIDKESDDL--VSL 283 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEech-hhccccccc--eEe
Confidence 677771 122222222 1222222233332 4543333 67799999998887776665431 111111112 333
Q ss_pred c-CCCCEEEEEeCCCeEEEEECCCCcEEEeec
Q 002266 203 S-PDGETLAVPGLKNDVVMYDRDTAEKLFSLR 233 (945)
Q Consensus 203 s-pdg~~La~gs~dg~I~vwD~~t~~~~~~~~ 233 (945)
. |..+.++.+ .++.|++.|+.-...+.++.
T Consensus 284 ~~~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 284 KPPSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ecCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 3 344555554 47899999998666655554
No 483
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.11 E-value=18 Score=42.03 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=60.3
Q ss_pred CceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002266 196 SMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQ 275 (945)
Q Consensus 196 ~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~ 275 (945)
.|..+..++.|..++..+.+|.+.++=.+.|.+-..+.. ....|+|=.++-+.++ ++.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-gk~~v~CRt~~i~~~~-fts-------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-GKSTVNCRTTPVAERF-FTS-------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC-CCceEEEEeeccccee-ecc--------------------
Confidence 356788889999999888888776665554444333332 2223333333222211 111
Q ss_pred cCCCCeeEEEEecCC---CEEEEEEcCCeEEEEecCCCCCC
Q 002266 276 KFDDRICCMAWKPIG---NALAVIDVMGKYGVWESVVPSSM 313 (945)
Q Consensus 276 ~~~~~V~~la~spdg---~~Las~s~DG~I~iWd~~~~~~~ 313 (945)
...-.+..++|+|+. ..|..-+.|..|++|+...+..+
T Consensus 163 s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 163 STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 112246678999975 57888999999999999877764
No 484
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=80.20 E-value=43 Score=41.18 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=42.4
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEcCCCCccccccccc-cccceEEEEEecCCCEEEEEEcCCcEEEEEcCCC
Q 002266 21 CSILWDQQAHHLVTASSSETTISIHDPLLPSNLPKILRH-HRDGVTALALSPNSTCLASGSIDHSVKLYKFPGG 93 (945)
Q Consensus 21 ~svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~~~l~~-h~~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~g 93 (945)
.++-.+..|...++|-+..|.+-+=|.... ..++.+.+ ....|.+|+.+.+..+++ ..+|.|+-|-+...
T Consensus 188 HSvfl~~kgqvY~cGhG~GGRlG~gdeq~~-~iPkrV~gL~gh~~~qisvs~~HslvL--T~~g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 188 HSVFLTEKGQVYVCGHGAGGRLGFGDEQYN-FIPKRVPGLIGHKVIQISVSHTHSLVL--TKFGSVYSWGLNGS 258 (1267)
T ss_pred eeeEecCCCcEEEeccCCCCccCcCccccc-ccccccccccccceEEEEeecceeEEE--eecceEEEeecCcc
Confidence 344556677754554446666666554433 23333333 345688888888765554 47889999987643
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.90 E-value=59 Score=31.29 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=69.6
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEcCCCCcccc------ccccccccceEEEEEec-----CCCEEEEEEcCCcEEEEEc
Q 002266 22 SILWDQQAHHLVTASSSETTISIHDPLLPSNLP------KILRHHRDGVTALALSP-----NSTCLASGSIDHSVKLYKF 90 (945)
Q Consensus 22 svafspdg~~L~t~g~~dg~V~IWd~~~~~~~~------~~l~~h~~~V~~la~sp-----dg~~Lasgs~Dg~V~iwdl 90 (945)
.-.|......|++++ ..|.|.|++........ ..+-.-...|++|+-.+ +...|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT-~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACAT-TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEe-cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345777777788876 78899999865432111 11222356788886655 3467777665 57999999
Q ss_pred CCCeeeeecccCCCCEEEEEEec---CCCEEEEEECCCcEEEEEcCCCeEEEE
Q 002266 91 PGGEFQTNITRFTLPIRVLAFNK---SGSMLAAAGDDEGIKLINTIDGSIARV 140 (945)
Q Consensus 91 ~~g~~~~~l~~~~~~V~~l~fsp---dg~~Lasgs~Dg~I~iwd~~~~~~~~~ 140 (945)
....-+ .++.....|.++.+-. ...-++..+.+..|.-||....+...+
T Consensus 81 ~~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 765532 2333456777777743 122344444556677777655544443
No 486
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.73 E-value=1.4e+02 Score=35.58 Aligned_cols=228 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred ecCCCEEEEEEcCCcEEEEEcCCCe---eeeecccCCCCEEEEEEecCC-CEEEEEECCCc--EEEEEcCCCeEEEEEec
Q 002266 70 SPNSTCLASGSIDHSVKLYKFPGGE---FQTNITRFTLPIRVLAFNKSG-SMLAAAGDDEG--IKLINTIDGSIARVLKG 143 (945)
Q Consensus 70 spdg~~Lasgs~Dg~V~iwdl~~g~---~~~~l~~~~~~V~~l~fspdg-~~Lasgs~Dg~--I~iwd~~~~~~~~~l~~ 143 (945)
..++..++.+..+|.+....+.... .+..+........++.+..+| .+|++|+.-|. +..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 3466788888999999888775433 122222214455677776654 47777876554 4444433334444554
Q ss_pred CCCCEEEEEEccC----CC------EEEEEe---CCCcEEEEEccCCeeee--eecccCCCCCCCCCCceEEEEcC-CCC
Q 002266 144 HKGPVTGLAFDPN----SE------YLASID---SIGTVIYWELQSGRELH--NLKRVAPDIGSDPSSMNVLSWSP-DGE 207 (945)
Q Consensus 144 h~~~V~~lafspd----g~------~Las~s---~Dg~I~iwDl~t~~~i~--~~~~~~~~~~~~~~~i~~l~~sp-dg~ 207 (945)
.-++|.++++.+. .. .|++++ .+|.+++.. .|-... .... ..... ...+..+.... +..
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~--~~l~~-v~~iW~l~~~~~~~~ 372 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELAS--SELPG-VTGIWTLKLSSSDHS 372 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEE--EEEST-EEEEEEE-SSSSSBS
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeec--cCCCC-ceEEEEeeecCCCce
Confidence 3478999888531 11 455554 466788774 332222 1111 00000 11122222222 245
Q ss_pred EEEEEeCCCeEEEEECC---CCcEEEeecC-CC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeeeecc--CC
Q 002266 208 TLAVPGLKNDVVMYDRD---TAEKLFSLRG-DH---VQPICFLSWSPNGKYMATSSLDRQILIWDVGKKLDIDRQK--FD 278 (945)
Q Consensus 208 ~La~gs~dg~I~vwD~~---t~~~~~~~~~-~h---~~~I~~l~fSpdg~~Lasgs~Dg~I~IWD~~~~~~i~~~~--~~ 278 (945)
+|+++.. ..-+++.+. ..+.+..+.. .. ...+.+-.+. +.+++=.+. ..|++.+....+...... ..
T Consensus 373 ~lv~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~ 448 (504)
T PF10433_consen 373 YLVLSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAG 448 (504)
T ss_dssp EEEEEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS
T ss_pred EEEEEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCC
Confidence 6666654 444555553 3333322211 01 1122222222 444444443 448888887776666543 34
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEecCC
Q 002266 279 DRICCMAWKPIGNALAVIDVMGKYGVWESVV 309 (945)
Q Consensus 279 ~~V~~la~spdg~~Las~s~DG~I~iWd~~~ 309 (945)
..|.+.+.. +.+++.+-.+|.+..+++..
T Consensus 449 ~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~ 477 (504)
T PF10433_consen 449 SIIVAASIN--DPQVLVALSGGELVYFELDD 477 (504)
T ss_dssp ---SEEEES--SSEEEEEE-TTEEEEEEEET
T ss_pred CeEEEEEEC--CCEEEEEEeCCcEEEEEEEC
Confidence 456666555 35777777788888887754
No 487
>PLN02193 nitrile-specifier protein
Probab=79.70 E-value=1.4e+02 Score=35.40 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=73.2
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCeeeeecccC---CCCE-EEEEEecCCCEEEEEECCC-----cEEEEEcCCCeE
Q 002266 72 NSTCLASGSID-----HSVKLYKFPGGEFQTNITRF---TLPI-RVLAFNKSGSMLAAAGDDE-----GIKLINTIDGSI 137 (945)
Q Consensus 72 dg~~Lasgs~D-----g~V~iwdl~~g~~~~~l~~~---~~~V-~~l~fspdg~~Lasgs~Dg-----~I~iwd~~~~~~ 137 (945)
++.+++.|+.+ ..+.+||+.+.+-.. +... ..+. ...+..-++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666677654 358888887654322 2111 1111 1112223566777776543 367788876543
Q ss_pred EEEEe-----cCCCCEEEEEEccCCCEEEEEeCC----CcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCE
Q 002266 138 ARVLK-----GHKGPVTGLAFDPNSEYLASIDSI----GTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGET 208 (945)
Q Consensus 138 ~~~l~-----~h~~~V~~lafspdg~~Las~s~D----g~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~ 208 (945)
...-. ........+. -++++++.++.+ ..+.+||+.+.+-... ... ...........++ .-+++.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~-~~~-g~~P~~R~~~~~~--~~~~~i 380 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV-ETF-GVRPSERSVFASA--AVGKHI 380 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEe-ccC-CCCCCCcceeEEE--EECCEE
Confidence 22110 0111111222 256777777655 3588999887653222 110 0000001111122 225677
Q ss_pred EEEEeCC--------------CeEEEEECCCCc
Q 002266 209 LAVPGLK--------------NDVVMYDRDTAE 227 (945)
Q Consensus 209 La~gs~d--------------g~I~vwD~~t~~ 227 (945)
+++|+.. +.+.+||+.+.+
T Consensus 381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 7777743 258889987654
No 488
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.27 E-value=6.4 Score=29.85 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.5
Q ss_pred CCEEEEEEccCC---CEEEEEeCCCcEEEEEccCC
Q 002266 146 GPVTGLAFDPNS---EYLASIDSIGTVIYWELQSG 177 (945)
Q Consensus 146 ~~V~~lafspdg---~~Las~s~Dg~I~iwDl~t~ 177 (945)
+.|.++.|+|.+ .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888899999999853
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.58 E-value=13 Score=37.45 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=25.6
Q ss_pred CCeeEEEEecCC------CEEEEEEcCCeEEEEecC
Q 002266 279 DRICCMAWKPIG------NALAVIDVMGKYGVWESV 308 (945)
Q Consensus 279 ~~V~~la~spdg------~~Las~s~DG~I~iWd~~ 308 (945)
..|.+++|||.| ..|++.+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 479999999954 379999999999999765
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.12 E-value=32 Score=41.91 Aligned_cols=96 Identities=19% Similarity=0.322 Sum_probs=54.7
Q ss_pred EEEEEEccCCCEEEEEeCCCc-----EEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEE
Q 002266 148 VTGLAFDPNSEYLASIDSIGT-----VIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYD 222 (945)
Q Consensus 148 V~~lafspdg~~Las~s~Dg~-----I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD 222 (945)
-..++|-|.|..+++-..||. |.++.- +|-.-..+.. .......+...+|.-....++++ ..+.|.+|-
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~l----r~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwt 322 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDL----RVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWT 322 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccc----cCCchhhhhhhhhhHHHHHHHHh-hcceEEEEE
Confidence 345899999999999876652 444432 2211111100 00122334557787666666664 467899998
Q ss_pred CCCCcEEEeecCCCCCCeEEEEEcCCCC
Q 002266 223 RDTAEKLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 223 ~~t~~~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
..+..--..... ....+.-+.|+|...
T Consensus 323 tkNyhWYLK~e~-~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 323 TKNYHWYLKVER-QIPGISYVKWHPEEK 349 (1243)
T ss_pred ccceEEEEEEee-cCCCcceeeeccccC
Confidence 876543322222 234577789999543
No 491
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=78.01 E-value=96 Score=38.18 Aligned_cols=168 Identities=19% Similarity=0.270 Sum_probs=91.8
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCc----EEEEEcCCCeEEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 002266 100 TRFTLPIRVLAFNKSGSMLAAAGDDEG----IKLINTIDGSIARVLKGHKGPVTGLAFDPNSEYLASIDSIGTVIYWELQ 175 (945)
Q Consensus 100 ~~~~~~V~~l~fspdg~~Lasgs~Dg~----I~iwd~~~~~~~~~l~~h~~~V~~lafspdg~~Las~s~Dg~I~iwDl~ 175 (945)
..+...+..+.|+|+|..++..+.++. +++.+.. + .+..+...+....|+|++..++....++....
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~---- 126 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR---- 126 (620)
T ss_pred cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEeccccccc----
Confidence 345667888999999999999884432 3444443 3 33445677888999999998887222111000
Q ss_pred CCeeeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEeecCCCCCCeEEEEEcCCCCEEEEE
Q 002266 176 SGRELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHVQPICFLSWSPNGKYMATS 255 (945)
Q Consensus 176 t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg~I~vwD~~t~~~~~~~~~~h~~~I~~l~fSpdg~~Lasg 255 (945)
.+. ..+. ..-..+-|...| .....+.+.|... ...... .....+....++++++.++..
T Consensus 127 ~~~--~~~~----------~~~~~~~~~~~g------~~~~~l~~~d~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 185 (620)
T COG1506 127 DGG--DHLF----------VDRLPVWFDGRG------GERSDLYVVDIES--KLIKLG-LGNLDVVSFATDGDGRLVASI 185 (620)
T ss_pred CCc--eeee----------ecccceeecCCC------CcccceEEEccCc--cccccc-CCCCceeeeeeCCCCceeEEe
Confidence 000 0000 000012222222 3345566667665 222222 244567777777777877766
Q ss_pred ECCCe-------EEEEECCCCeeeeeccCCCCeeEEEEecCCCEEEEEE
Q 002266 256 SLDRQ-------ILIWDVGKKLDIDRQKFDDRICCMAWKPIGNALAVID 297 (945)
Q Consensus 256 s~Dg~-------I~IWD~~~~~~i~~~~~~~~V~~la~spdg~~Las~s 297 (945)
..+.. ..++...++...........+..+.|.++|+.++..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 186 RLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred eeccccCCceEeeEEEecCCCceEEEcCCCceeeeeeeCCCCCeeEEec
Confidence 54432 3333334555555554555677778888877555443
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.90 E-value=39 Score=43.73 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=26.1
Q ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEEcCC
Q 002266 62 DGVTALALSPNSTCLASGSIDHSVKLYKFPG 92 (945)
Q Consensus 62 ~~V~~la~spdg~~Lasgs~Dg~V~iwdl~~ 92 (945)
.....++|+|.-.+++.+...|.|++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456789999999999999999999997544
No 493
>PLN02153 epithiospecifier protein
Probab=77.74 E-value=1.2e+02 Score=33.96 Aligned_cols=104 Identities=8% Similarity=0.109 Sum_probs=51.0
Q ss_pred cCCCEEEEEEcC-----------CcEEEEEcCCCeeeeecccCC----CC-EEEEEEecCCCEEEEEECC----------
Q 002266 71 PNSTCLASGSID-----------HSVKLYKFPGGEFQTNITRFT----LP-IRVLAFNKSGSMLAAAGDD---------- 124 (945)
Q Consensus 71 pdg~~Lasgs~D-----------g~V~iwdl~~g~~~~~l~~~~----~~-V~~l~fspdg~~Lasgs~D---------- 124 (945)
-++++++.|+.+ ..|.+||..+.+-. .+.... .. -.+++ .-++++++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~ 213 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSD 213 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccc
Confidence 355666777643 24778887765422 221111 11 11122 2356666665532
Q ss_pred ---CcEEEEEcCCCeEEEEEe-----cCCCCEEEEEEccCCCEEEEEeCC--------------CcEEEEEccCCe
Q 002266 125 ---EGIKLINTIDGSIARVLK-----GHKGPVTGLAFDPNSEYLASIDSI--------------GTVIYWELQSGR 178 (945)
Q Consensus 125 ---g~I~iwd~~~~~~~~~l~-----~h~~~V~~lafspdg~~Las~s~D--------------g~I~iwDl~t~~ 178 (945)
..|.+||+.+.+-...-. ........+.+ ++.+++.|+.. ..|..||+.+..
T Consensus 214 ~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 214 YESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred eecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 358889987765332211 01111122222 46667777641 156778876654
No 494
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=76.67 E-value=1.4e+02 Score=33.99 Aligned_cols=95 Identities=13% Similarity=0.015 Sum_probs=41.6
Q ss_pred CCCEEEEEEc-CCcEEEEEcCCC-eeeeecccCC--CCEEEEEEecCCCEEEEEECCC-----------cEEEEEcCCCe
Q 002266 72 NSTCLASGSI-DHSVKLYKFPGG-EFQTNITRFT--LPIRVLAFNKSGSMLAAAGDDE-----------GIKLINTIDGS 136 (945)
Q Consensus 72 dg~~Lasgs~-Dg~V~iwdl~~g-~~~~~l~~~~--~~V~~l~fspdg~~Lasgs~Dg-----------~I~iwd~~~~~ 136 (945)
+++..+.++. +..+.++|+... .....+.... .........-++.+.+.|+... .+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 4445454443 345677776531 1112222111 1111122233567777776532 47778887654
Q ss_pred EEEEEecCCCCEE-EEEEc-cCCCEEEEEeCC
Q 002266 137 IARVLKGHKGPVT-GLAFD-PNSEYLASIDSI 166 (945)
Q Consensus 137 ~~~~l~~h~~~V~-~lafs-pdg~~Las~s~D 166 (945)
-...-........ ..+.. -++++++.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3221110111111 11122 367777777654
No 495
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.58 E-value=7 Score=29.67 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCEEEEEEecCC---CEEEEEECCCcEEEEEcCC
Q 002266 104 LPIRVLAFNKSG---SMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 104 ~~V~~l~fspdg---~~Lasgs~Dg~I~iwd~~~ 134 (945)
+.|+++.|+|.. .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 5888888899999999985
No 496
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.53 E-value=1.4e+02 Score=33.22 Aligned_cols=107 Identities=9% Similarity=0.112 Sum_probs=51.5
Q ss_pred CCCEEEEEECCC-----cEEEEEcCCCeEE---EEEecCCCCE--EEEEEccCCCEEEEEeCC-----CcEEEEEccCCe
Q 002266 114 SGSMLAAAGDDE-----GIKLINTIDGSIA---RVLKGHKGPV--TGLAFDPNSEYLASIDSI-----GTVIYWELQSGR 178 (945)
Q Consensus 114 dg~~Lasgs~Dg-----~I~iwd~~~~~~~---~~l~~h~~~V--~~lafspdg~~Las~s~D-----g~I~iwDl~t~~ 178 (945)
++.+++.|+.++ .+..+|+.+.... ..+..-..+. .+++. -++.+.+.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 556777777543 4667777665431 1221111111 12222 246666666642 357888887654
Q ss_pred eeeeecccCCCCCCCCCCceEEEEcCCCCEEEEEeCCC----eEEEEECCCCc
Q 002266 179 ELHNLKRVAPDIGSDPSSMNVLSWSPDGETLAVPGLKN----DVVMYDRDTAE 227 (945)
Q Consensus 179 ~i~~~~~~~~~~~~~~~~i~~l~~spdg~~La~gs~dg----~I~vwD~~t~~ 227 (945)
-.. +... +.. ......+...+++..+.|+.++ .+.+||..+.+
T Consensus 151 W~~-~~~~-p~~----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFE-LPDF-PGE----PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeE-CCCC-CCC----CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 221 1111 100 0111122233677777777653 35688887643
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.32 E-value=11 Score=38.05 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCEEEEEEecCC------CEEEEEECCCcEEEEEcCC
Q 002266 104 LPIRVLAFNKSG------SMLAAAGDDEGIKLINTID 134 (945)
Q Consensus 104 ~~V~~l~fspdg------~~Lasgs~Dg~I~iwd~~~ 134 (945)
..+..++|||.| .+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999944 4788889999999997653
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.29 E-value=1.6e+02 Score=33.75 Aligned_cols=193 Identities=17% Similarity=0.155 Sum_probs=106.2
Q ss_pred cCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCCCEEEEEEc----cCCCE--EEEEe-CC---CcEEEEEccCC-eeee
Q 002266 113 KSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFD----PNSEY--LASID-SI---GTVIYWELQSG-RELH 181 (945)
Q Consensus 113 pdg~~Lasgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~lafs----pdg~~--Las~s-~D---g~I~iwDl~t~-~~i~ 181 (945)
|...+|+.....+-+.+||+ .|+.+..+.. +.++.+..- -.|+. |++++ .+ ..|++|.+... ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 34567777788889999999 5555666542 344433321 13432 34443 32 46999988632 2233
Q ss_pred eecccCCCCCCCCCCceEEEE--cC-CCC-EEEEEeCCCeEEEEECC---CC----cEEEeecCCCCCCeEEEEEcCCCC
Q 002266 182 NLKRVAPDIGSDPSSMNVLSW--SP-DGE-TLAVPGLKNDVVMYDRD---TA----EKLFSLRGDHVQPICFLSWSPNGK 250 (945)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~l~~--sp-dg~-~La~gs~dg~I~vwD~~---t~----~~~~~~~~~h~~~I~~l~fSpdg~ 250 (945)
.+......+......++.+|+ +| +|. ++++...+|.+..|.+. .+ +.+++|.. ...+..|.......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccC
Confidence 332111111112234566666 34 455 55667788988877664 33 34666653 45788899988888
Q ss_pred EEEEEECCCeEEEEECCC-----Ceeeeec---cCCCCeeEEEEec--CCC-EEEE-EEcCCeEEEEecCCC
Q 002266 251 YMATSSLDRQILIWDVGK-----KLDIDRQ---KFDDRICCMAWKP--IGN-ALAV-IDVMGKYGVWESVVP 310 (945)
Q Consensus 251 ~Lasgs~Dg~I~IWD~~~-----~~~i~~~---~~~~~V~~la~sp--dg~-~Las-~s~DG~I~iWd~~~~ 310 (945)
+|+.+-.+.-|+-|+.+. +..+... .+...|-.|+.-. ++. +|++ .-.++...||+...+
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999998888888752 2333222 2345677787753 443 4444 445678999987643
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=75.16 E-value=1.5e+02 Score=33.33 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=27.3
Q ss_pred cCCCEEEEEECC-----------CcEEEEEcCCCeEEEEEecCCCCEEEE-EE-ccCCCEEEEEeCC
Q 002266 113 KSGSMLAAAGDD-----------EGIKLINTIDGSIARVLKGHKGPVTGL-AF-DPNSEYLASIDSI 166 (945)
Q Consensus 113 pdg~~Lasgs~D-----------g~I~iwd~~~~~~~~~l~~h~~~V~~l-af-spdg~~Las~s~D 166 (945)
-++++.+.|+.+ ..+..||+.+..-...-........+. +. .-++++.+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 367777777753 247778887655332211111111111 11 2367777777654
No 500
>PRK05560 DNA gyrase subunit A; Validated
Probab=74.95 E-value=2.5e+02 Score=35.82 Aligned_cols=235 Identities=9% Similarity=-0.009 Sum_probs=120.8
Q ss_pred ecCCCEEEEEEcCCcEEEEEcCCCee-------e--eecccCCCCEEEEEEecCCCEEEEEECCCcEEEEEc---CC---
Q 002266 70 SPNSTCLASGSIDHSVKLYKFPGGEF-------Q--TNITRFTLPIRVLAFNKSGSMLAAAGDDEGIKLINT---ID--- 134 (945)
Q Consensus 70 spdg~~Lasgs~Dg~V~iwdl~~g~~-------~--~~l~~~~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~---~~--- 134 (945)
-++...+++-+.+|.|+...+.+... . ..+. ....+..+........|+..+..|.+..... ..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 34566778888899888876543211 0 0111 2234555555556677777788887766543 22
Q ss_pred ---CeEE---EEEecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeeeeeecccCCCCCCCCCCceEEEEcCCC
Q 002266 135 ---GSIA---RVLKGHKGPVTGLAFDP--NSEYLASIDSIGTVIYWELQSGRELHNLKRVAPDIGSDPSSMNVLSWSPDG 206 (945)
Q Consensus 135 ---~~~~---~~l~~h~~~V~~lafsp--dg~~Las~s~Dg~I~iwDl~t~~~i~~~~~~~~~~~~~~~~i~~l~~spdg 206 (945)
|..+ ..+.....-|..+.+.. +..+++..+.+|.++--++..-.....-......... ...+..+......
T Consensus 574 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~ 652 (805)
T PRK05560 574 TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGD 652 (805)
T ss_pred CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCC
Confidence 2222 11222233345555552 5678888999999888776432211100000000111 2233333333344
Q ss_pred CEEEEEeCCCeEEEEECCCC---------cEEEeecCCCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCC-------
Q 002266 207 ETLAVPGLKNDVVMYDRDTA---------EKLFSLRGDHVQPICF-LSWSPNGKYMATSSLDRQILIWDVGKK------- 269 (945)
Q Consensus 207 ~~La~gs~dg~I~vwD~~t~---------~~~~~~~~~h~~~I~~-l~fSpdg~~Lasgs~Dg~I~IWD~~~~------- 269 (945)
..+++.+..|.+..+....- .....+. ....|.. +.+.+++.+++..+..|.++...+..-
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~--~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR--EGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC--CCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 56666677887777765321 1222222 2233433 344444457888888898887765321
Q ss_pred --eeeeec-cCCCCeeEEEEecCCCEEEEEEcCCeEEEEecC
Q 002266 270 --LDIDRQ-KFDDRICCMAWKPIGNALAVIDVMGKYGVWESV 308 (945)
Q Consensus 270 --~~i~~~-~~~~~V~~la~spdg~~Las~s~DG~I~iWd~~ 308 (945)
...... ...+.+..+........++..+.+|.+..++..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 111111 112344444333344457777888888777653
Done!