BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002267
(945 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 183/756 (24%), Positives = 305/756 (40%), Gaps = 97/756 (12%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISY--KAPFSPGASRSAIN 230
A+ L+EYY W + A D D G + + + D+ ++K+ +++ +
Sbjct: 111 ALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 169
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
SL L + R ++ D I ++G Y +I + L T D
Sbjct: 170 SLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN-----LGFT---DG 221
Query: 291 DTMNLLQG---VVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA----YDSV 343
D + + G V + D L FI RW L+ KE P + Y YD+V
Sbjct: 222 DLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKE-YPGAHTATIKYTSALTYDAV 280
Query: 344 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRV-FDGGQQFLQTLLRMNFTGL 402
++ A L + + S D L++ V + G + + L ++ GL
Sbjct: 281 QVMTEAFRNLRKQ--RIEISRRGNAGDC------LANPAVPWGQGVEIERALKQVQVEGL 332
Query: 403 SGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSVVAPEILYTKPPNSSSNRHL 462
SG I+FD + +N +++ + G R+IGYWS +++ T+ S +
Sbjct: 333 SGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSE-------VDKMVLTEDDTSGLEQKT 385
Query: 463 YSVIWPGEITATPRGWVFPNNGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAV 522
V I +P + N+ A+ Y +GYC+D+ AA
Sbjct: 386 VVVT---TILESPYVMMKANHA-----ALAGNERY-------------EGYCVDL--AAE 422
Query: 523 NLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDF 576
+ + G+GK I+N +V ++ K D A+ +TI R +++DF
Sbjct: 423 IAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDF 482
Query: 577 TQPYMESGL-VVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVG-AVVWILEHRFN-- 632
++P+M G+ +++ QK K ++FL P +W+ F ++G +VV L RF+
Sbjct: 483 SKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCI--VFAYIGVSVVLFLVSRFSPY 540
Query: 633 ----------NEFRGPPSQQLVTIF---WFSFSTMFFSHRENTVSSL-GRXXXXXXXXXX 678
E + S IF WFS + + SL GR
Sbjct: 541 EWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFT 600
Query: 679 XXXNSSYTASLTSILTVQQLTSQIEGIDSLISSTE-PIGVQD-GSFAWNYLVDELKIAES 736
SSYTA+L + LTV+++ S IE + L TE G D GS + ++ + +
Sbjct: 601 LIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDK 660
Query: 737 RLVKLKNME------EYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTK 790
+++ E + +AR K G A + E E + C+ VG
Sbjct: 661 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 720
Query: 791 SGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKW-LTYNECSMDLSPADGGGSRLSL 849
G+G A + S L ++ A+L+LSE G L K+ NKW EC S + S LSL
Sbjct: 721 KGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSL 780
Query: 850 KSFWGLFLI----CGIACFLALIFFFCRVCGQFRRF 881
+ G+F I G+A +ALI F + + +R
Sbjct: 781 SNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRM 816
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/422 (22%), Positives = 183/422 (43%), Gaps = 67/422 (15%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENE------------------- 115
++ +NSDP++LP TL IRD+ V ++++ + +
Sbjct: 63 LERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEFIRDSLISSEEEEGLVRCVDGSSS 122
Query: 116 -------VVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQ-YPYFLRTTQSD 167
+V IGP SS +A + +++ N+P +++ AT L+ + YF+R SD
Sbjct: 123 SFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSD 182
Query: 168 YYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRS 227
Q A+ D+V+ Y W V A+ + +YG +G+ D +K+ I++ A
Sbjct: 183 AQQARAMVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQ 242
Query: 228 AINSLL--VGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDST 285
+ + LL + ++L ++RV T + + LG+ AG ++ + +D D T
Sbjct: 243 SFDKLLKKLTSHLPKARVVACFCEGMTVRGLLMAMRRLGL-AGEFLLLGSDGWADRYDVT 301
Query: 286 EPVDIDTMNLLQGVVALRHHTPD--------------TDLKKNFISRWKNLKYK---ENS 328
+ + + G + ++ +PD T+ + + + +++ E
Sbjct: 302 DGYQREAV----GGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRLEGF 357
Query: 329 PSGFNSYALYAYDSVWLVAHAL-DALLNEGGKFTFSNDPKLHDTNGSMLN-----LSSLR 382
P + Y S+ L H + D+ + +S LH+ S+ +++
Sbjct: 358 PQENSKYNKTCNSSLTLKTHHVQDSKMGFVINAIYSMAYGLHNMQMSLCPGYAGLCDAMK 417
Query: 383 VFDGGQQFLQTLLRMNFTGLSGE-IRFDADKNLVNPA-YDVLNIGGTGSR-----RIGYW 435
D G++ L++L++ NFTG+SG+ I F D+N +P Y+++N G +G W
Sbjct: 418 PID-GRKLLESLMKTNFTGVSGDTILF--DENGDSPGRYEIMNFKEMGKDYFDYINVGSW 474
Query: 436 SN 437
N
Sbjct: 475 DN 476
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/439 (20%), Positives = 170/439 (38%), Gaps = 90/439 (20%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLM--------ENE----------- 115
+D++N D +LPG L I DT ++L+ + E E
Sbjct: 52 IDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQ 111
Query: 116 ------VVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDY 168
+ IG S ++ +++++ +P +S+ +T L+ +Y YF RT D+
Sbjct: 112 ENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDF 171
Query: 169 YQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASR-- 226
YQ A+A+++ ++ W V + + DYG GI + I+ R
Sbjct: 172 YQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKS 231
Query: 227 --SAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD-W--LPSV 281
S I LL N +RV V+ + D + + A + S+ W+A+D W S+
Sbjct: 232 YDSVIRELLQKPN---ARVVVLFMRSDDSRELIAAANRVN---ASFTWVASDGWGAQESI 285
Query: 282 LDSTEPVDIDTMNLLQGVVALR--------------HHTP----------DTDLKKNFIS 317
+ +E V + L +R H P L+
Sbjct: 286 VKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNH 345
Query: 318 RWKNLKYKENSPSGF--NSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSM 375
R K+ S + S ++ ++V+ +AHAL + + KL D
Sbjct: 346 RQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM----QRTLCPQTTKLCD----- 396
Query: 376 LNLSSLRVFDGGQQFLQTLLRMNFT-------GLSGEIRFDADKNLVNPAYDVLNIGGTG 428
++++ DG + + + LL++ FT G ++FD + + Y+V N+ TG
Sbjct: 397 ----AMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMG-RYNVFNLQQTG 451
Query: 429 SR----RIGYWSNYSGLSV 443
+ ++G+W+ L V
Sbjct: 452 GKYSYLKVGHWAETLSLDV 470
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/418 (20%), Positives = 168/418 (40%), Gaps = 67/418 (16%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVA---------------- 118
+D +N+DP +LP TL IRD+ V ++++ + + +++
Sbjct: 54 LDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRCLPDGQ 113
Query: 119 -------------AIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQ-YPYFLRTT 164
IGP SS +A + +++ ++P +++ AT L+ Y YFLR
Sbjct: 114 TLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVV 173
Query: 165 QSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGA 224
SD Q A+ D+V+ Y W V A+ + +YG +G+ + +++ I++ A
Sbjct: 174 PSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNA 233
Query: 225 SRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVL 282
+ + LL ++RV V T + S + LG+ G + I +D
Sbjct: 234 GEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRD 292
Query: 283 DSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKENSPSG-FNSYALYAYD 341
+ E +++ G + ++ +P+ ++F + L+ N+ + F + + +
Sbjct: 293 EVIEGYEVEA----NGGITIKLQSPEV---RSFDDYFLKLRLDTNTRNPWFPEFWQHRF- 344
Query: 342 SVWLVAHALD-------ALLNEGGKFTFSNDPKL------------------HDTNGSML 376
L H L+ NE + + D K+ H +
Sbjct: 345 QCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHV 404
Query: 377 NLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGY 434
L G++ L L++ +F G+SGE + +K YD++N+ T + R Y
Sbjct: 405 GLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDY 462
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/418 (20%), Positives = 167/418 (39%), Gaps = 67/418 (16%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVA---------------- 118
+D +N+DP +LP TL IRD+ V ++++ + + +++
Sbjct: 59 LDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQ 118
Query: 119 -------------AIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQ-YPYFLRTT 164
IGP SS +A + +++ ++P +++ AT L+ Y YFLR
Sbjct: 119 SLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVV 178
Query: 165 QSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGA 224
SD Q A+ D+V+ Y W V A+ + +YG +G+ + +++ I++ A
Sbjct: 179 PSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNA 238
Query: 225 SRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVL 282
+ + LL ++RV V T + S + LG+ G + I +D
Sbjct: 239 GEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRD 297
Query: 283 DSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKENSPSG-FNSYALYAYD 341
+ E +++ G + ++ +P+ ++F + L+ N+ + F + + +
Sbjct: 298 EVIEGYEVEA----NGGITIKLQSPEV---RSFDDYFLKLRLDTNTRNPWFPEFWQHRF- 349
Query: 342 SVWLVAHALD-------ALLNEGGKFTFSNDPKL------------------HDTNGSML 376
L H L+ NE + + D K+ H +
Sbjct: 350 QCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHV 409
Query: 377 NLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGY 434
L G + L L++ +F G+SGE + +K YD++N+ T + R Y
Sbjct: 410 GLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDY 467
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/439 (20%), Positives = 167/439 (38%), Gaps = 90/439 (20%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLM--------ENE----------- 115
+D++N D +LPG L I DT ++L+ + E E
Sbjct: 51 IDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQ 110
Query: 116 ------VVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDY 168
+ IG S ++ +++++ +P +S+ +T L+ +Y YF RT D+
Sbjct: 111 ENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDF 170
Query: 169 YQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASR-- 226
YQ A+A+++ ++ W V + + DYG GI + I+ R
Sbjct: 171 YQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKS 230
Query: 227 --SAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD-W--LPSV 281
S I LL N +RV V+ + D + + A S+ W+A+D W S+
Sbjct: 231 YDSVIRELLQKPN---ARVVVLFMRSDDSRELIAAASRAN---ASFTWVASDGWGAQESI 284
Query: 282 LDSTEPVDIDTMNLLQGVVALR--------------HHTP----------DTDLKKNFIS 317
+ +E V + L +R H P L+
Sbjct: 285 IKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNH 344
Query: 318 RWKNLKYKENSPSGF--NSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSM 375
R K+ S + S ++ ++V+ +AHAL + + N KL D
Sbjct: 345 RRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM----QRTLCPNTTKLCD----- 395
Query: 376 LNLSSLRVFDGGQQFLQTLLRMNFTG-------LSGEIRFDADKNLVNPAYDVLNIGGTG 428
++++ DG + + LL++NFT ++FD + + Y+V N G
Sbjct: 396 ----AMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMG-RYNVFNFQNVG 450
Query: 429 SR----RIGYWSNYSGLSV 443
+ ++G+W+ L V
Sbjct: 451 GKYSYLKVGHWAETLSLDV 469
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 130/320 (40%), Gaps = 65/320 (20%)
Query: 160 FLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAP 219
FLRT +Q +++ Y W +I + DD GR L L ++ +K
Sbjct: 117 FLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQ 176
Query: 220 FSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLP 279
F PG + +LL+ A +E+RV ++ + D T++ A L MT YVW+ +
Sbjct: 177 FDPGTKN--VTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGE--- 231
Query: 280 SVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA 339
+ G ALR + PD + I +G N A +
Sbjct: 232 --------------REISG-NALR-YAPDGIIGLQLI-------------NGKNESA-HI 261
Query: 340 YDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNF 399
D+V +VA A+ LL K ++ P+ G + N + ++ G F + L+ +
Sbjct: 262 SDAVGVVAQAVHELLE---KENITDPPR-----GCVGNTN---IWKTGPLFKRVLMSSKY 310
Query: 400 T-GLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSVVAPEILYTKPPNSSS 458
G++G + F+ D + Y ++N+ ++G Y+G V+ PN
Sbjct: 311 ADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGI---YNGTHVI---------PNDR- 357
Query: 459 NRHLYSVIWPGEITATPRGW 478
+IWPG T PRG+
Sbjct: 358 -----KIIWPGGETEKPRGY 372
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/436 (20%), Positives = 161/436 (36%), Gaps = 82/436 (18%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME--------------------- 113
+D +NSDP++LP TL I DT ++L ++
Sbjct: 54 LDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFV 113
Query: 114 --NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQ 170
+VV IG S ++ ++++++ +P +S+ +T P L+ +Y +F R D +Q
Sbjct: 114 KPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQ 173
Query: 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRS--- 227
A+ D+V+ GW V + + YG G+ +SK+ +S R
Sbjct: 174 AQAMVDIVKALGWNYVSTLASEGSYGEKGVESF-TQISKEAGGLSIAQSVRIPQERKDRT 232
Query: 228 -----AINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVL 282
I LL N SR V+ N + I + AK G ++W+ +D S +
Sbjct: 233 IDFDRIIKQLLDTPN---SRAVVIFANDEDIKQILAAAKRADQV-GHFLWVGSDSWGSKI 288
Query: 283 DSTEPVDIDTMNLLQGVVALRHHTPDTD-LKKNFISR-----WKNLKYKENSPSGFNSYA 336
+ + ++ +G + ++ + F SR +N+ + E FN
Sbjct: 289 NPLHQHE----DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKL 344
Query: 337 LYA----------------------YDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGS 374
+ Y+ V +DA+ N D G
Sbjct: 345 TISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGV 404
Query: 375 MLNLSSLRVFDGGQQFLQTLLRMNFTGLSGE-IRFDADKNLVNPA------YDVLNIGGT 427
+ GG++ L+ + +NF G +G + F +KN P Y N
Sbjct: 405 CPEMEQA----GGKKLLKYIRNVNFNGSAGTPVMF--NKNGDAPGRYDIFQYQTTNTSNP 458
Query: 428 GSRRIGYWSNYSGLSV 443
G R IG W++ L++
Sbjct: 459 GYRLIGQWTDELQLNI 474
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/436 (20%), Positives = 160/436 (36%), Gaps = 82/436 (18%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME--------------------- 113
+D +NSDP++LP TL I DT ++L ++
Sbjct: 54 LDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFV 113
Query: 114 --NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQ 170
+VV IG S ++ ++++++ +P +S+ +T P L+ +Y +F R D +Q
Sbjct: 114 KPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQ 173
Query: 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRS--- 227
A+ D+V+ GW V + + YG G+ +SK+ + R
Sbjct: 174 AQAMVDIVKALGWNYVSTLASEGSYGEKGVESF-TQISKEAGGLCIAQSVRIPQERKDRT 232
Query: 228 -----AINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVL 282
I LL N SR V+ N + I + AK G ++W+ +D S +
Sbjct: 233 IDFDRIIKQLLDTPN---SRAVVIFANDEDIKQILAAAKRADQV-GHFLWVGSDSWGSKI 288
Query: 283 DSTEPVDIDTMNLLQGVVALRHHTPDTD-LKKNFISR-----WKNLKYKENSPSGFNSYA 336
+ + ++ +G + ++ + F SR +N+ + E FN
Sbjct: 289 NPLHQHE----DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKL 344
Query: 337 LYA----------------------YDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGS 374
+ Y+ V +DA+ N D G
Sbjct: 345 TISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGV 404
Query: 375 MLNLSSLRVFDGGQQFLQTLLRMNFTGLSGE-IRFDADKNLVNPA------YDVLNIGGT 427
+ GG++ L+ + +NF G +G + F +KN P Y N
Sbjct: 405 CPEMEQA----GGKKLLKYIRHVNFNGSAGTPVMF--NKNGDAPGRYDIFQYQTTNTTNP 458
Query: 428 GSRRIGYWSNYSGLSV 443
G R IG W++ L++
Sbjct: 459 GYRLIGQWTDELQLNI 474
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 134/347 (38%), Gaps = 38/347 (10%)
Query: 81 DPSILPGTTLNFVIRDTNC---SGFVGTMEALQLMENEVVAAIGPQSSGIAHVISHVVNE 137
+ S+L L+ + DT C G +A++ N ++ G + +I+ +
Sbjct: 49 NESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMV-FGGVCPSVTSIIAESLQG 107
Query: 138 LNVPLLSFGATDPTLT-SLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYG 196
N+ LSF AT P L +YPYF RT SD A+ L+++Y W+ V + D
Sbjct: 108 WNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF 167
Query: 197 RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTI 256
+ L L + +IS FS S L G ++ R+ + + + +
Sbjct: 168 SEVRNDLTGVLYGEDIEISDTESFSNDPCTSV--KKLKGNDV---RIILGQFDQNMAAKV 222
Query: 257 FSVAKSLGMTAGSYVWIATDW--------LPSVLDSTEPVDIDTMNLLQGVVALRHHTPD 308
F A M Y WI W + + +S+ + + + ++G + +
Sbjct: 223 FCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLS 282
Query: 309 TDLKKNF-------ISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFT 361
+ K R N K PS F+ YAYD +W++A L +
Sbjct: 283 SKQIKTISGKTPQQYEREYNNKRSGVGPSKFHG---YAYDGIWVIAKTLQRAMET--LHA 337
Query: 362 FSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRF 408
S ++ D N + L G+ L + NF G++G++ F
Sbjct: 338 SSRHQRIQDFNYTDHTL--------GRIILNAMNETNFFGVTGQVVF 376
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/390 (21%), Positives = 154/390 (39%), Gaps = 50/390 (12%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNC-SGFVGTMEALQLMENEVVAAIGPQSSGIAHVISH 133
V+ +N + ++LP TTL + + N F + +A + V A GP S A+ +
Sbjct: 30 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS 89
Query: 134 VVNELNVPLLSF-------GATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREV 186
+ N L VP + D SL YP F ++ A+ DLV+++ W+ V
Sbjct: 90 ICNALGVPHIQTRWKHQVSDNKDSFYVSL-YPDFSSLSR-------AILDLVQFFKWKTV 141
Query: 187 IAIFVDDDYGRNGISVLGDALSKKRAKISYKA-PFSPGASRSAINSLLVGANLMESRVFV 245
++ DD G + L A S+ ++ + P ++ + + G +
Sbjct: 142 TVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFH----VI 196
Query: 246 VHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH 305
+ + I A ++GM Y +I T LD EP +N+ R
Sbjct: 197 FDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD-VEPYRYSGVNM----TGFRIL 251
Query: 306 TPDTDLKKNFISRW--KNLKYKENSPSGF-----NSYALYAYDSVWLVAHALDALLNEGG 358
+ + I +W + L+ SG + A YD+V +V+ A+
Sbjct: 252 NTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQF----- 306
Query: 359 KFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNL-VNP 417
P++ S L + + + G +F+ + ++ GL+G I F+ L +
Sbjct: 307 -------PQM---TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDF 356
Query: 418 AYDVLNIGGTGSRRIGYWSNYSGLSVVAPE 447
DV+++ G +IG W SGL++ +
Sbjct: 357 DLDVISLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 146/377 (38%), Gaps = 38/377 (10%)
Query: 78 VNSDPSILPGTTLNFVIRDTN-CSGFVGTMEALQLMENEVVAAIGPQSSGIAHVISHVVN 136
+N + ++LP TTL + I+ + F T +A + VVA GP + + + N
Sbjct: 36 INRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICN 95
Query: 137 ELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQM-HAVADLVEYYGWREVIAIFVDDDY 195
L VP + L + Y DY + HA+ DLV+ WR ++ DD
Sbjct: 96 ALEVPHIQLRWKHHPLDNKDTFYV--NLYPDYASLSHAILDLVQSLKWRSATVVY-DDST 152
Query: 196 GRNGISVLGDALSKKRAKISYKA-PFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGL 254
G + L A S+ ++ + P SR + + G E R+ + +
Sbjct: 153 GLIRLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKEMKRGR---EFRI-IFDCSHTMAA 208
Query: 255 TIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKN 314
I A ++GM Y +I T LD EP +NL R D
Sbjct: 209 QILKQAMAMGMMTEYYHFIFTTLDLYALD-LEPYRYSGVNL----TGFRILNVDNPHVSA 263
Query: 315 FISRW--KNLKYKENSPSGF-----NSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPK 367
+ +W + L+ + SG + A YD+V +V+ + P+
Sbjct: 264 IVEKWSMERLQAAPRAESGLLDGVMMTDAALLYDAVHIVS------------VCYQRAPQ 311
Query: 368 LHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNL-VNPAYDVLNIGG 426
+ + L + + G +F+ + + GL+G I F+ L + D++++
Sbjct: 312 M---TVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKE 368
Query: 427 TGSRRIGYWSNYSGLSV 443
G ++G WS GL++
Sbjct: 369 DGLEKVGVWSPADGLNI 385
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 153/390 (39%), Gaps = 50/390 (12%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNC-SGFVGTMEALQLMENEVVAAIGPQSSGIAHVISH 133
V+ +N + ++LP TTL + + N F + +A + V A GP S A+ +
Sbjct: 30 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS 89
Query: 134 VVNELNVPLLSF-------GATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREV 186
+ N L VP + D SL YP F ++ A+ DLV+++ W+ V
Sbjct: 90 ICNALGVPHIQTRWKHQVSDNKDSFYVSL-YPDFSSLSR-------AILDLVQFFKWKTV 141
Query: 187 IAIFVDDDYGRNGISVLGDALSKKRAKISYKA-PFSPGASRSAINSLLVGANLMESRVFV 245
++ DD G + L A S+ ++ + P ++ + + G +
Sbjct: 142 TVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFH----VI 196
Query: 246 VHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH 305
+ + I A ++ M Y +I T LD EP +N+ R
Sbjct: 197 FDCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALD-VEPYRYSGVNM----TGFRIL 251
Query: 306 TPDTDLKKNFISRW--KNLKYKENSPSGF-----NSYALYAYDSVWLVAHALDALLNEGG 358
+ + I +W + L+ SG + A YD+V +V+ A+
Sbjct: 252 NTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQF----- 306
Query: 359 KFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNL-VNP 417
P++ S L + + + G +F+ + ++ GL+G I F+ L +
Sbjct: 307 -------PQM---TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDF 356
Query: 418 AYDVLNIGGTGSRRIGYWSNYSGLSVVAPE 447
DV+++ G +IG W SGL++ +
Sbjct: 357 DLDVISLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 28/286 (9%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISY--KAPFSPGASRSAIN 230
A+ L+EYY W + A D D G + + + D+ ++K+ +++ +
Sbjct: 119 ALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 177
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
SL L + R ++ D I ++G Y +I + L T D
Sbjct: 178 SLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN-----LGFT---DG 229
Query: 291 DTMNLLQG---VVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA----YDSV 343
D + + G V + D L FI RW L+ KE P + Y YD+V
Sbjct: 230 DLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKE-YPGAHTATIKYTSALTYDAV 288
Query: 344 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRV-FDGGQQFLQTLLRMNFTGL 402
++ A L + + S D L++ V + G + + L ++ GL
Sbjct: 289 QVMTEAFRNLRKQ--RIEISRRGNAGDC------LANPAVPWGQGVEIERALKQVQVEGL 340
Query: 403 SGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSVVAPEI 448
SG I+FD + +N +++ + G R+IGYWS + V E+
Sbjct: 341 SGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTEL 386
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 28/286 (9%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISY--KAPFSPGASRSAIN 230
A+ L+EYY W + A D D G + + + D+ ++K+ +++ +
Sbjct: 111 ALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMYR 169
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
SL L + R ++ D I ++G Y +I + L T D
Sbjct: 170 SLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN-----LGFT---DG 221
Query: 291 DTMNLLQG---VVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA----YDSV 343
D + + G V + D L FI RW L+ KE P + Y YD+V
Sbjct: 222 DLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKE-YPGAHTTTIKYTSALTYDAV 280
Query: 344 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRV-FDGGQQFLQTLLRMNFTGL 402
++ A L + + S D L++ V + G + + L ++ GL
Sbjct: 281 QVMTEAFRNLRKQ--RIEISRRGNAGDC------LANPAVPWGQGVEIERALKQVQVEGL 332
Query: 403 SGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSVVAPEI 448
SG I+FD + +N +++ + G R+IGYWS + V E+
Sbjct: 333 SGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTEL 378
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 19/121 (15%)
Query: 481 PNNGMPLRIAVPNRVSYNEFVAKDKSPP---------GVKGYCIDVFEAAVNLLPYPVPH 531
P +G +R +VP R N + SPP KG+CID+ + + + + +
Sbjct: 25 PISGTCIRDSVPCRSQLN----RTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFS--Y 78
Query: 532 NYIMYGNGKR----NPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVV 587
+ + NGK + ++N ++ +V + D A+G +TI R+++VDF+ P++E+G+ V
Sbjct: 79 DLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISV 138
Query: 588 V 588
+
Sbjct: 139 M 139
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 28/281 (9%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISY--KAPFSPGASRSAIN 230
A+ L+EYY W + A D D G + + + D+ ++K+ +++ +
Sbjct: 109 ALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 167
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
SL L + R ++ D I ++G Y +I + L T D
Sbjct: 168 SLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN-----LGFT---DG 219
Query: 291 DTMNLLQG---VVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA----YDSV 343
D + + G V + D L FI RW L+ KE P + Y YD+V
Sbjct: 220 DLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKE-YPGAHTATIKYTSALTYDAV 278
Query: 344 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRV-FDGGQQFLQTLLRMNFTGL 402
++ A L + + S D L++ V + G + + L ++ GL
Sbjct: 279 QVMTEAFRNLRKQ--RIEISRRGNAGDC------LANPAVPWGQGVEIERALKQVQVEGL 330
Query: 403 SGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSV 443
SG I+FD + +N +++ + G R+IGYWS + V
Sbjct: 331 SGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 371
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 111/281 (39%), Gaps = 28/281 (9%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISY--KAPFSPGASRSAIN 230
A+ L+EYY W + A D D G + + + D+ ++K+ +++ +
Sbjct: 111 ALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 169
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
SL L + R ++ D I ++G Y +I + + D
Sbjct: 170 SLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYI--------IANLGFTDG 221
Query: 291 DTMNLLQG---VVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA----YDSV 343
D + + G V + D L FI RW L+ KE P + Y YD+V
Sbjct: 222 DLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKE-YPGAHTATIKYTSALTYDAV 280
Query: 344 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRV-FDGGQQFLQTLLRMNFTGL 402
++ A L + + S D L++ V + G + + L ++ GL
Sbjct: 281 QVMTEAFRNLRKQ--RIEISRRGNAGDC------LANPAVPWGQGVEIERALKQVQVEGL 332
Query: 403 SGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSV 443
SG I+FD + +N +++ + G R+IGYWS + V
Sbjct: 333 SGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 28/281 (9%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISY--KAPFSPGASRSAIN 230
A+ L+EYY W + A D D G + + + D+ ++K+ +++ +
Sbjct: 114 ALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 172
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
SL L + R ++ D I ++G Y +I + L T D
Sbjct: 173 SLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN-----LGFT---DG 224
Query: 291 DTMNLLQG---VVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYA----YDSV 343
D + + G V + D L FI RW L+ KE P + Y YD+V
Sbjct: 225 DLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKE-YPGAHTATIKYTSALTYDAV 283
Query: 344 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRV-FDGGQQFLQTLLRMNFTGL 402
++ A L + + S D L++ V + G + + L ++ GL
Sbjct: 284 QVMTEAFRNLRKQ--RIEISRRGNAGDC------LANPAVPWGQGVEIERALKQVQVEGL 335
Query: 403 SGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSV 443
SG I+FD + +N +++ + G R+IGYWS + V
Sbjct: 336 SGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 376
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F + C+ T G+ F +SG+G ++DSP ++S +IL+ ENG ++ + W+ Y E
Sbjct: 230 FEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQE 289
Query: 833 C 833
C
Sbjct: 290 C 290
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 480 FPNNGMPLRIAV---PNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMY 536
F NG P++ + PN S + P G+CID+ + + + +
Sbjct: 32 FTVNGDPVKKVICTGPNDTSPGS--PRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVAD 89
Query: 537 G--------NGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVV 588
G N +N ++ ++ + D V +TI T R + ++F++P+ GL ++
Sbjct: 90 GKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINTERAQYIEFSKPFKYQGLTIL 149
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F + C+ T G+ F +SG+G ++DSP ++S +IL+ ENG ++ + W+ Y E
Sbjct: 230 FEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQE 289
Query: 833 C 833
C
Sbjct: 290 C 290
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 480 FPNNGMPLRIAV---PNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMY 536
F NG P++ + PN S + P G+CID+ + + + +
Sbjct: 32 FTVNGDPVKKVICTGPNDTSPGS--PRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVAD 89
Query: 537 G--------NGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVV 588
G N +N ++ ++ + D V +TI R + ++F++P+ GL ++
Sbjct: 90 GKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTIL 149
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 160 FLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAK------ 213
FLRT +Q +++ + W VI I DD GR L L K +K
Sbjct: 115 FLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNY 174
Query: 214 -----ISYKAPFSPGASR--------SAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 260
+SY P A + + +LL+ A +E+RV ++ + D ++ A
Sbjct: 175 ENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 234
Query: 261 KSLGMTAGSYVWI 273
L MT YVW+
Sbjct: 235 AMLDMTGAGYVWL 247
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMY--GNGK 540
N +P R V S NE + K KG+CID+ + L V Y +Y NGK
Sbjct: 33 NTVPCRKFVKINNSTNEGMNVKKC---CKGFCIDILKK----LSRTVKFTYDLYLVTNGK 85
Query: 541 R----NPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVA 589
N ++N ++ +V + AVG +TI R+++VDF+ P++E+G+ V+
Sbjct: 86 HGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 779 CEFRTVGQE--FTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLT 829
C+ T+G F +G+G A Q+ SP + A+LQ +G+++++ WLT
Sbjct: 227 CKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT 279
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 684 SYTASLTSILTVQQLTSQIEGIDSLISSTEP---IGVQDGSFAWNYLVDELKIAESRLVK 740
S + S S+ + + + I+G+D L + P IG++ G+ +Y + E+
Sbjct: 99 SNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYP 158
Query: 741 LKNMEEYSIALARGPKGGGVAAIVD----ELPYIELFMSKTNCEFRTVGQEFTKSGWGFA 796
LK+ +E +L +A I+D ++ E + C VG++F KS +G
Sbjct: 159 LKSRQEMYDSL--------LAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIV 210
Query: 797 FQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNEC 833
++ A DL IL L E G L + KW C
Sbjct: 211 TPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTKAC 247
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 484 GMPLRI----AVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNG 539
G+ LRI +VP + N ++ + GY +D+ E + + +
Sbjct: 7 GITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQL-----A 61
Query: 540 KRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVV 588
N Y +V +A +D A+GDIT+ + R ++V F+ ++ + ++
Sbjct: 62 PPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRIL 110
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 133/336 (39%), Gaps = 34/336 (10%)
Query: 116 VVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVA 175
V A G H ++ + L++ L++ + PT Q+ LR + A+
Sbjct: 70 VFAIFGLYDKRSVHTLTSFCSALHISLIT--PSFPTEGESQFVLQLRPSLRG-----ALL 122
Query: 176 DLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVG 235
L+++Y W + ++ D D G + + + + + +S A + + LL
Sbjct: 123 SLLDHYEWNCFVFLY-DTDRGYSILQAIMEKAGQNGWHVS--AICVENFNDVSYRQLLEE 179
Query: 236 ANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNL 295
+ + + FV+ + I S+G Y +I + DI
Sbjct: 180 LDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFK--------DISLERF 231
Query: 296 LQG---VVALRHHTPDTDLKKNFISRWKNLKYKE----NSPSGFNSYALYAYDSVWLVAH 348
+ G V + +T + + RWK L +E +P + S AL YD V ++A
Sbjct: 232 IHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTS-AL-TYDGVLVMAE 289
Query: 349 ALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRF 408
+L + K S D + N ++ + G +TL ++ GL+G ++F
Sbjct: 290 TFRSLRRQ--KIDISRRGNAGDC---LANPAA--PWGQGIDMERTLKQVRIQGLTGNVQF 342
Query: 409 DADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSVV 444
D VN DV + TG R++GYW++ L ++
Sbjct: 343 DHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLI 378
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 160 FLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAK------ 213
FLRT +Q + + W VI I DD GR L L K +K
Sbjct: 116 FLRTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNY 175
Query: 214 -----ISYKAPFSPGASR--------SAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 260
+SY P A + + +LL+ A +E+RV ++ + D ++ A
Sbjct: 176 ENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235
Query: 261 KSLGMTAGSYVWI 273
L T YVW+
Sbjct: 236 AXLDXTGAGYVWL 248
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYCID+ + ++L + + YG +N +V+++ +K D AV +TI
Sbjct: 33 EGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTIT 92
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K +DF++P+M G+ ++
Sbjct: 93 HVREKAIDFSKPFMTLGVSIL 113
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E L
Sbjct: 185 ALLMESTTIE-YITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLH 243
Query: 822 KIHNKWLTYNEC 833
+ KW + C
Sbjct: 244 IMKEKWWRGSGC 255
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYCID+ + ++L + + YG +N +V+++ +K D AV +TI
Sbjct: 35 EGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTIT 94
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K +DF++P+M G+ ++
Sbjct: 95 HVREKAIDFSKPFMTLGVSIL 115
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E L
Sbjct: 187 ALLMESTTIE-YITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLH 245
Query: 822 KIHNKWLTYNEC 833
+ KW + C
Sbjct: 246 IMKEKWWRGSGC 257
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 756 KGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLS 815
K G A + D + ++ +C F TVG G+G A Q SP S IL+L
Sbjct: 185 KYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQ 244
Query: 816 ENGDLQKIHNKWLTYN-ECSM 835
++GD+ + +KW N +C +
Sbjct: 245 QSGDMDILKHKWWPKNGQCDL 265
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 507 PPGVKGYCIDVFEAAVNLLP-----YPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561
P +G+ IDV +A N L Y P + YG+ + + +N +V ++ + D +
Sbjct: 26 PKKYQGFSIDVLDALSNYLGFNYEIYVAPDH--KYGSPQEDGTWNGLVGELVFKRADIGI 83
Query: 562 GDITIVTNRTKLVDFTQPYME 582
+TI +R +VDFT YM+
Sbjct: 84 SALTITPDRENVVDFTTRYMD 104
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 193 GVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNL 252
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 253 AVLKLSEQGILDKLKNKW 270
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 511 KGYCIDV-FEAAVNLLPYPVPHNYIMYGNGK---RNP---IYNDIVQQVALNKFDAAVGD 563
+GYC+D+ +E A ++ + + + G+GK R+P I+N +V ++ + D AV
Sbjct: 49 EGYCVDLAYEIAKHVR---IKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAP 105
Query: 564 ITIVTNRTKLVDFTQPYMESGLVVV 588
+TI R +++DF++P+M G+ ++
Sbjct: 106 LTITLVREEVIDFSKPFMSLGISIM 130
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 511 KGYCIDV-FEAAVNLLPYPVPHNYIMYGNGK---RNP---IYNDIVQQVALNKFDAAVGD 563
+GYC+D+ +E A ++ + + + G+GK R+P I+N +V ++ + D AV
Sbjct: 30 EGYCVDLAYEIAKHVR---IKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAP 86
Query: 564 ITIVTNRTKLVDFTQPYMESGLVVV 588
+TI R +++DF++P+M G+ ++
Sbjct: 87 LTITLVREEVIDFSKPFMSLGISIM 111
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 234 AVLKLSEQGILDKLKNKW 251
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 511 KGYCIDV-FEAAVNLLPYPVPHNYIMYGNGK---RNP---IYNDIVQQVALNKFDAAVGD 563
+GYC+D+ +E A ++ + + + G+GK R+P I+N +V ++ + D AV
Sbjct: 30 EGYCVDLAYEIAKHVR---IKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAP 86
Query: 564 ITIVTNRTKLVDFTQPYMESGLVVV 588
+TI R +++DF++P+M G+ ++
Sbjct: 87 LTITLVREEVIDFSKPFMSLGISIM 111
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 234 AVLKLSEQGILDKLKNKW 251
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 511 KGYCIDV-FEAAVNLLPYPVPHNYIMYGNGK---RNP---IYNDIVQQVALNKFDAAVGD 563
+GYC+D+ +E A ++ + + + G+GK R+P I+N +V ++ + D AV
Sbjct: 30 EGYCVDLAYEIAKHV---RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAP 86
Query: 564 ITIVTNRTKLVDFTQPYMESGLVVV 588
+TI R +++DF++P+M G+ ++
Sbjct: 87 LTITLVREEVIDFSKPFMSLGISIM 111
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 237 AVLKLSEQGVLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G + SP ++ AILQL E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 237 AVLKLSEQGVLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYC+D+ + N+L + + YG +N +V+++ ++ D AV +TI
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 YVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E G L
Sbjct: 186 ALLMESTSIE-YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH 244
Query: 822 KIHNKWLTYNEC 833
+ KW N C
Sbjct: 245 MMKEKWWRGNGC 256
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYC+D+ + N+L + + YG +N +V+++ ++ D AV +TI
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 YVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E G L
Sbjct: 186 ALLMESTSIE-YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH 244
Query: 822 KIHNKWLTYNEC 833
+ KW N C
Sbjct: 245 MMKEKWWRGNGC 256
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 142/359 (39%), Gaps = 71/359 (19%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-----EVVAAIGPQSSGIAH 129
VD++N+ I G + V +D T EA + N +V A +GP +SG
Sbjct: 35 VDEINAAGGI-DGKQIEVVDKDNKSE----TAEAASVTTNLVTQSKVSAVVGPATSGATA 89
Query: 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAI 189
+ VPL+S AT LT Q F+ T Q D +Q +++ V + + +
Sbjct: 90 AAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQ-DSFQGKIISNYVSEKLNAKKVVL 148
Query: 190 FVDD--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA-NLMESRVFVV 246
+ D+ DY + GI+ K + SYK + A ++ A M+ + F
Sbjct: 149 YTDNASDYAK-GIA--------KSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDA 199
Query: 247 HVNP---DTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALR 303
V P + I + A+ +G+ + D + E V T + +
Sbjct: 200 IVVPGYYNEAGKIVNQARGMGI---DKPIVGGDG----FNGEEFVQQATAEKASNIYFIS 252
Query: 304 HHTPDTDLK---KNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKF 360
+ ++ K F+ ++ KY E PS ++A AYDSV LVA+A N G
Sbjct: 253 GFSTTVEVSAKAKAFLDAYR-AKYNE-EPS---TFAALAYDSVHLVANAAKGAKNSG--- 304
Query: 361 TFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAY 419
++ D NL+ + +F G++G+ FDAD N V AY
Sbjct: 305 ------EIKD------NLAXTK---------------DFEGVTGQTSFDADHNTVKTAY 336
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 511 KGYCIDV-FEAAVNLLPYPVPHNYIMYGNGK---RNP---IYNDIVQQVALNKFDAAVGD 563
+GYC+D+ +E A ++ + + + G+GK R+P I+N +V ++ + D AV
Sbjct: 30 EGYCVDLAYEIAKHV---RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAP 86
Query: 564 ITIVTNRTKLVDFTQPYMESGLVVV 588
+TI R +++DF++P+M G+ ++
Sbjct: 87 LTITLVREEVIDFSKPFMSLGISIM 111
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYC+D+ + N+L + + YG +N +V+++ ++ D AV +TI
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 YVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E G L
Sbjct: 186 ALLMESTSIE-YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH 244
Query: 822 KIHNKWLTYNEC 833
+ KW N C
Sbjct: 245 MMKEKWWRGNGC 256
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYC+D+ + N+L + + YG +N +V+++ ++ D AV +TI
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 YVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E G L
Sbjct: 186 ALLMESTSIE-YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH 244
Query: 822 KIHNKWLTYNEC 833
+ KW N C
Sbjct: 245 MMKEKWWRGNGC 256
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYI---MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV 567
+GYC+D+ + N+L + + YG +N +V+++ ++ D AV +TI
Sbjct: 32 EGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 91
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 92 YVREKVIDFSKPFMTLGISIL 112
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 762 AIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQ 821
A++ E IE ++++ NC +G G+G SP ++ AILQL E G L
Sbjct: 185 ALLMESTSIE-YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH 243
Query: 822 KIHNKWLTYNEC 833
+ KW N C
Sbjct: 244 MMKEKWWRGNGC 255
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 176 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNL 235
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 236 AVLKLSEQGVLDKLKNKW 253
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 32 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 89
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 90 TITLVREEVIDFSKPFMSLGISIM 113
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 237 AVLKLSEQGVLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 756 KGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLS 815
K G A + D + ++ +C F TVG G+G A Q SP S IL+L
Sbjct: 185 KYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQ 244
Query: 816 ENGDLQKIHNKWLTYN-ECSM 835
++GD + +KW N +C +
Sbjct: 245 QSGDXDILKHKWWPKNGQCDL 265
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 507 PPGVKGYCIDVFEAAVNLLP-----YPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561
P +G+ IDV +A N L Y P + YG+ + + +N +V ++ + D +
Sbjct: 26 PKKYQGFSIDVLDALSNYLGFNYEIYVAPDH--KYGSPQEDGTWNGLVGELVFKRADIGI 83
Query: 562 GDITIVTNRTKLVDFTQPYMESGLVVV 588
+TI +R +VDFT Y + + V+
Sbjct: 84 SALTITPDRENVVDFTTRYXDYSVGVL 110
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 759 GVAAIVDELPYIELF-MSKT----------NCEFRTVGQEFTKSGWGFAFQRDSPLAIDL 807
GVA + + P + F M K+ +C+ TVG+ F G+G ++SPL +L
Sbjct: 205 GVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNL 264
Query: 808 STAILQLSENGDLQKIHNKWLTYNEC 833
S I + +G + +H+KW C
Sbjct: 265 SEFISRYKSSGFIDLLHDKWYKMVPC 290
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 512 GYCIDVFEAAVNLLPYPVPHNYIMY--GNGK----RNPIYNDIVQQVALNKFDAAVGDIT 565
GYCID+ E L + ++ +Y G+GK R+ + +V + + AV +
Sbjct: 68 GYCIDLLERLAEDLAF----DFELYIVGDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFS 123
Query: 566 IVTNRTKLVDFTQPYMESGLVVV 588
I + R+++VDFT P+ + L ++
Sbjct: 124 INSARSQVVDFTSPFFSTSLGIM 146
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 234 AVLKLSEQGLLDKLKNKW 251
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 30 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 87
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 88 TITLVREEVIDFSKPFMSLGISIM 111
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 206 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 265
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 266 AVLKLSEQGLLDKLKNKW 283
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 62 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 119
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 120 TITLVREEVIDFSKPFMSLGISIM 143
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 237 AVLKLSEQGLLDKLKNKW 254
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITYVREEVIDFSKPFMSLGISIM 114
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 175 GVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNL 234
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 235 AVLKLSEAGVLDKLKNKW 252
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + + +GK I+N +V ++ K + A+ +
Sbjct: 31 EGYCVDLASEIAKHIG--IKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPL 88
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 89 TITLVREEVIDFSKPFMSLGISIM 112
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 237 AVLKLSEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AILQL E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AILQL E G L + KW N
Sbjct: 231 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 290
Query: 833 C 833
C
Sbjct: 291 C 291
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 42 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 101
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 102 TYVREKVIDFSKPFMTLGISIL 123
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AILQL E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AILQL E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AILQL E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AILQL E G L + KW N
Sbjct: 196 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Query: 833 C 833
C
Sbjct: 256 C 256
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYG----NGKRNPIYNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G N +N +V+++ +K D AV + I
Sbjct: 32 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAI 91
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 92 TYVREKVIDFSKPFMTLGISIL 113
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TCVREKVIDFSKPFMTLGISIL 114
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AI QL E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 173 GVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNL 232
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 233 AVLKLSEAGVLDKLKNKW 250
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + + +GK I+N +V ++ K + A+ +
Sbjct: 29 EGYCVDLASEIAKHIG--IKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPL 86
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 87 TITLVREEVIDFSKPFMSLGISIM 110
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 173 GVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNL 232
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+LSE G L K+ NKW
Sbjct: 233 AVLKLSEAGVLDKLKNKW 250
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + + +GK I+N +V ++ K + A+ +
Sbjct: 29 EGYCVDLASEIAKHIG--IKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPL 86
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 87 TITLVREEVIDFSKPFMSLGISIM 110
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 193 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 252
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 253 AVLKLNEQGLLDKLKNKW 270
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + G+GK I+N +V ++ K D A+ +
Sbjct: 49 EGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 106
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 107 TITLVREEVIDFSKPFMSLGISIM 130
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 176 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 235
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 236 AVLKLNEQGLLDKLKNKW 253
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 32 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 89
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 90 TITLVREEVIDFSKPFMSLGISIM 113
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 193 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 252
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 253 AVLKLNEQGLLDKLKNKW 270
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 45 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 102
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 103 TITLVREEVIDFSKPFMSLGISIM 126
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 175 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 234
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 235 AVLKLNEQGLLDKLKNKW 252
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 31 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 88
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 89 TITLVREEVIDFSKPFMSLGISIM 112
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITYVREEVIDFSKPFMSLGISIM 114
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITYVREEVIDFSKPFMSLGISIM 114
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 30 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 87
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 88 TITLVREEVIDFSKPFMSLGISIM 111
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 30 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 87
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 88 TITLCREEVIDFSKPFMSLGISIM 111
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 113/274 (41%), Gaps = 25/274 (9%)
Query: 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASR--SAIN 230
A+ L+ YY W + + ++ D + G + + + +A + +++ + S G +
Sbjct: 120 AILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTAR---SVGNIKDVQEFR 175
Query: 231 SLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDI 290
++ + + + +++ + TI LG + Y ++ + L T+ +
Sbjct: 176 RIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLAN-----LGFTDILLE 230
Query: 291 DTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE-----NSPSGFNSYALYAYDSVWL 345
M+ + + + + + FI RW L +E N+P + S AL +D++ +
Sbjct: 231 RVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTS-AL-THDAILV 288
Query: 346 VAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGE 405
+A A L + D + G L ++ + G + L + G++G
Sbjct: 289 IAEAFRYLRRQ------RVDVSRRGSAGDCLANPAV-PWSQGIDIERALKMVQVQGMTGN 341
Query: 406 IRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYS 439
I+FD N DV + +GSR+ GYW+ Y
Sbjct: 342 IQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ + + + G+GK I+N +V ++ K D A+ +
Sbjct: 30 EGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGCRDADTKIWNGMVGELVYGKADIAIAPL 87
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 88 TITLVREEVIDFSKPFMSLGISIM 111
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R K++DF++P+M G+ ++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AIL+L E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 175 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGCNLDSKGYGIATPKGSSLGNAVNL 234
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 235 AVLKLNEQGLLDKLKNKW 252
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 31 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 88
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 89 TITLVREEVIDFSKPFMSLGISIM 112
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 178 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 237
Query: 810 AILQLSENGDLQKIHNK-WLTYNECSMDLSPADGGGSRLSL 849
A+L+L+E G L K+ NK W EC + S LSL
Sbjct: 238 AVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSL 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 34 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 91
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 92 TITLVREEVIDFSKPFMSLGISIM 115
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 190 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 249
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 250 AVLKLNEQGLLDKLKNKW 267
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 46 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 103
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 104 TITLVREEVIDFSKPFMSLGISIM 127
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 778 NCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNEC 833
+C+ TVG+ F G+G +SPL ++S I Q +G + +H+KW C
Sbjct: 237 DCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVPC 292
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 512 GYCIDVFEAAVNLLPYPVPHNYIMYGNGK----RNPIYNDIVQQVALNKFDAAVGDITIV 567
GYCID+ E + + + + G+GK +N + +V + + AV +I
Sbjct: 70 GYCIDLLEQLAEDMNFDF--DLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSIN 127
Query: 568 TNRTKLVDFTQPYMESGLVVV 588
T R++++DFT P+ + L ++
Sbjct: 128 TARSQVIDFTSPFFSTSLGIL 148
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L E G L K+ NKW
Sbjct: 237 AVLKLDEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNL 236
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 33 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 90
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 91 TITLVREEVIDFSKPFMSLGISIM 114
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 750 ALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLST 809
+AR K G A + E E + C+ VG G+G A + S L ++
Sbjct: 175 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDCKGYGIATPKGSSLGNAVNL 234
Query: 810 AILQLSENGDLQKIHNKW 827
A+L+L+E G L K+ NKW
Sbjct: 235 AVLKLNEQGLLDKLKNKW 252
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGK------RNPIYNDIVQQVALNKFDAAVGDI 564
+GYC+D+ AA + + G+GK I+N +V ++ K D A+ +
Sbjct: 31 EGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPL 88
Query: 565 TIVTNRTKLVDFTQPYMESGLVVV 588
TI R +++DF++P+M G+ ++
Sbjct: 89 TITLVREEVIDFSKPFMSLGISIM 112
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AIL+L E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ +L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R +++DF++P+M G+ ++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AIL+L E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R +++DF++P+M G+ ++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AIL+L E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R +++DF++P+M G+ ++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 773 FMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNE 832
F+++ NC +G G+G SP ++ AIL+L E G L + KW N
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Query: 833 C 833
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGN-GKRNPI---YNDIVQQVALNKFDAAVGDITI 566
+GYCID+ L + + G G ++ + +N +V+++ +K D AV + I
Sbjct: 33 EGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 567 VTNRTKLVDFTQPYMESGLVVV 588
R +++DF++P+M G+ ++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 125/347 (36%), Gaps = 53/347 (15%)
Query: 86 PGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAA--------IGPQSSGIAHVISHVVNE 137
PGT D++C AL + + V AA +GP A ++ + +
Sbjct: 95 PGTRFQVAYEDSDCGN-----RALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASH 149
Query: 138 LNVPLLSFGATDPTLTSL--QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDY 195
++P+LS GA +Y + R + + L ++ W ++ DD
Sbjct: 150 WDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKL 209
Query: 196 GRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255
RN L + + + + +S ++ +V RV ++ + DT +
Sbjct: 210 ERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRS 269
Query: 256 IFSVAKSLGMTAGSYVWIATDWLPSVL---------DSTEPVDIDTMNLLQGVVALRHHT 306
I VA GMT+G Y + + S D + + LQ V LR
Sbjct: 270 IMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVK 329
Query: 307 PDTDLKKNFISRWKNLKYKE--NSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSN 364
P+ + F K+ K+ N N + +D++ L AL +L G +S
Sbjct: 330 PEFE---KFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAG----YSK 382
Query: 365 DPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDAD 411
DGG+ QT R F G++G++ DA+
Sbjct: 383 K-------------------DGGKIIQQTWNR-TFEGIAGQVSIDAN 409
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 125/347 (36%), Gaps = 53/347 (15%)
Query: 86 PGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAA--------IGPQSSGIAHVISHVVNE 137
PGT D++C AL + + V AA +GP A ++ + +
Sbjct: 94 PGTRFQVAYEDSDCGN-----RALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASH 148
Query: 138 LNVPLLSFGATDPTLTSL--QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDY 195
++P+LS GA +Y + R + + L ++ W ++ DD
Sbjct: 149 WDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKL 208
Query: 196 GRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255
RN L + + + + +S ++ +V RV ++ + DT +
Sbjct: 209 ERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRS 268
Query: 256 IFSVAKSLGMTAGSYVWIATDWLPSVL---------DSTEPVDIDTMNLLQGVVALRHHT 306
I VA GMT+G Y + + S D + + LQ V LR
Sbjct: 269 IMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVK 328
Query: 307 PDTDLKKNFISRWKNLKYKE--NSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSN 364
P+ + F K+ K+ N N + +D++ L AL +L G +S
Sbjct: 329 PEFE---KFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAG----YSK 381
Query: 365 DPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDAD 411
DGG+ QT R F G++G++ DA+
Sbjct: 382 K-------------------DGGKIIQQTWNR-TFEGIAGQVSIDAN 408
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 125/347 (36%), Gaps = 53/347 (15%)
Query: 86 PGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAA--------IGPQSSGIAHVISHVVNE 137
PGT D++C AL + + V AA +GP A ++ + +
Sbjct: 52 PGTRFQVAYEDSDCGN-----RALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASH 106
Query: 138 LNVPLLSFGATDPTLTSL--QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDY 195
++P+LS GA +Y + R + + L ++ W ++ DD
Sbjct: 107 WDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKL 166
Query: 196 GRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255
RN L + + + + +S ++ +V RV ++ + DT +
Sbjct: 167 ERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRS 226
Query: 256 IFSVAKSLGMTAGSYVWIATDWLPSVL---------DSTEPVDIDTMNLLQGVVALRHHT 306
I VA GMT+G Y + + S D + + LQ V LR
Sbjct: 227 IMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVK 286
Query: 307 PDTDLKKNFISRWKNLKYKE--NSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSN 364
P+ + F K+ K+ N N + +D++ L AL +L G +S
Sbjct: 287 PEFE---KFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAG----YSK 339
Query: 365 DPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDAD 411
DGG+ QT R F G++G++ DA+
Sbjct: 340 K-------------------DGGKIIQQTWNR-TFEGIAGQVSIDAN 366
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 685 YTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNM 744
Y + L ++ VQ + I+ ID L + + I + G+ +++ LK E R + N+
Sbjct: 107 YDSGLAAM--VQANNTTIKSIDDL--NGKVIAAKTGTATIDWIKAHLKPKEIR--QFPNI 160
Query: 745 EEYSIALARGPKGGGVAAIVDELPYIELFMS-KTNCEFRTVGQEFTKSGWGFAFQRDSPL 803
++ +AL + G V A + + P + F++ + + G + +G F + SPL
Sbjct: 161 DQAYLAL----EAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPL 216
Query: 804 AIDLSTAILQLSENGDLQKIHNKWL 828
++ + ++ +G KI+ KW
Sbjct: 217 VAKVNAELARMKADGRYAKIYKKWF 241
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 545 YNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVV 588
+ ++ + D A+ +TI R K +DF+ PY +SGL +
Sbjct: 71 FAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAM 114
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 392 QTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLSVVAPEILY 450
+ L ++ F GL+G ++F+ N V+ + G R+IGYW+ A E+L+
Sbjct: 325 RALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAALEVLF 383
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 542 NPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVA 589
N ++ ++ + L KFDA G I T R K VDFT PY + + +A
Sbjct: 47 NQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFIA 94
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 22/206 (10%)
Query: 244 FVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALR 303
++ N + A LGMT+ Y +I T +L V+ D+ N+L G
Sbjct: 195 IIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVE-DSSNIL-GFSMFN 252
Query: 304 HHTPDTDLKKNFISRWKNLKYKEN-SPSGFNSYALYA---YDSVWLVAHALDALLNEGGK 359
P F+ R N+ ++EN S + AL A +D+V +V A+ L
Sbjct: 253 TSHP---FYPEFV-RSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVREL------ 302
Query: 360 FTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAY 419
+ + L +S ++ G + L + + GL+G + F++ N
Sbjct: 303 ------NRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTL 356
Query: 420 DVLNIGGTGSRRIGYWSNYSGLSVVA 445
+L G R IG W + L++ A
Sbjct: 357 RILEKSRQGHREIGVWYSNRTLAMNA 382
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
Length = 435
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 120/362 (33%), Gaps = 58/362 (16%)
Query: 78 VNSDPSILPGTTLNFVIRDTN-----CSGFVGTMEALQLM-ENEVVAAIGPQSSGIAHVI 131
V + P +LPG T+ V+ + CS + A+ L E+ +GP A +
Sbjct: 34 VKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPV 93
Query: 132 SHVVNELNVPLLSFGATDPTL---TSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIA 188
VPLL+ GA P L +Y RT S V L GW
Sbjct: 94 GRFTAHWRVPLLTAGA--PALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQAL 151
Query: 189 IFVDDDYG--RNGISVLGDALSKKRAKISY---KAPFSPGASRSAINSLLVGANLMESRV 243
+ D G R ++ + R +++ F G L+ A + RV
Sbjct: 152 VLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPK--LLRAVRRKGRV 209
Query: 244 FVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPV------------DID 291
+ +PD + +A + G+T YV+ D L S + + D
Sbjct: 210 IYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRS 269
Query: 292 TMNLLQGVVALRHHTPDTDLKKNFISRWKNL---KYKENSPSGF-NSYALYAYDSVWLVA 347
Q + + PD F+ + K L K+ G N +D + L
Sbjct: 270 ARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYV 329
Query: 348 HALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIR 407
A+ L +GG T G+ Q + +F G++G ++
Sbjct: 330 QAVTETLAQGGTVT------------------------DGENITQRMWNRSFQGVTGYLK 365
Query: 408 FD 409
D
Sbjct: 366 ID 367
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 2/143 (1%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHVISHV 134
+ D+N+ I G L V D C A +++ + + IG S S +
Sbjct: 30 IKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDI 88
Query: 135 VNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD-D 193
+ + ++S GAT+P LT Y + +RT D Q A + + IAI D
Sbjct: 89 YEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQ 148
Query: 194 DYGRNGISVLGDALSKKRAKISY 216
YG + D L A + +
Sbjct: 149 QYGEGLARSVQDGLKAANANVVF 171
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 762 AIVDELPYIELFM-SKTNCEFRTVGQEFTKSGWGFAFQRDS-PLAIDLSTAILQLSENGD 819
A++ + P I F+ + N +F+ VG +G AF + S L ++ A+ L ENG
Sbjct: 153 AVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 212
Query: 820 LQKIHNKWL 828
+I+ KW
Sbjct: 213 YNEIYKKWF 221
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 545 YNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVV 588
++ I+ + D A+ ITI R K +DF+ Y +SGL+V+
Sbjct: 50 FSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVM 93
>pdb|2LBP|A Chain A, Structure Of The L-Leucine-Binding Protein Refined At 2.4
Angstroms Resolution And Comparison With The Leu(Slash)
Ile(Slash)val-Binding Protein Structure
Length = 346
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 2/143 (1%)
Query: 75 VDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHVISHV 134
+ D+N+ I G L V D C A +++ + + IG S S +
Sbjct: 30 IKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDI 88
Query: 135 VNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD-D 193
+ + ++S GAT P LT Y + +RT D Q A + + IAI D
Sbjct: 89 YEDEGILMISPGATAPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQ 148
Query: 194 DYGRNGISVLGDALSKKRAKISY 216
YG + D L A + +
Sbjct: 149 QYGEGLARSVQDGLKAANANVVF 171
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 542 NPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAF 601
N ++ ++ + KFDA + + + R + V F+QPY E GL V +K +A
Sbjct: 51 NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYE-GLSAVVVTRKGAYHTFAD 109
Query: 602 LK 603
LK
Sbjct: 110 LK 111
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 549 VQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQK 593
V+ V K D + + T R + VDF PYM+ L VV+P K
Sbjct: 110 VEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154
>pdb|1CYX|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii With
Engineered Cu-A Binding Site)(Cyoa)
Length = 205
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 482 NNGMPLR-IAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK 540
++GM + IA P+R +++++VAK K P D+ AA L P +N + Y +
Sbjct: 105 HSGMKFKAIATPDRAAFDQWVAKAKQSPNTMS---DM--AAFEKLAAPSEYNQVEYFSNV 159
Query: 541 RNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYME 582
+ ++ D++ NKF A K +D TQP E
Sbjct: 160 KPDLFADVI-----NKFMA----------HGKSMDMTQPEGE 186
>pdb|1FFT|B Chain B, The Structure Of Ubiquinol Oxidase From Escherichia Coli
pdb|1FFT|G Chain G, The Structure Of Ubiquinol Oxidase From Escherichia Coli
Length = 315
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 483 NGMPLR-IAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKR 541
+GM + IA P+R +++++VAK K P AA L P +N + Y + +
Sbjct: 216 SGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDM-----AAFEKLAAPSEYNQVEYFSNVK 270
Query: 542 NPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYME 582
++ D++ NKF A K +D TQP E
Sbjct: 271 PDLFADVI-----NKFMA----------HGKSMDMTQPEGE 296
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 780 EFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKW 827
+ VG + +G +SP ++ A+L L ENG Q +++KW
Sbjct: 173 KVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKW 220
>pdb|1CYW|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii) (Cyoa)
Length = 205
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 483 NGMPLR-IAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKR 541
+GM + IA P+R +++++VAK K P D+ AA L P +N + Y + +
Sbjct: 106 SGMKFKAIATPDRAAFDQWVAKAKQSPNTMS---DM--AAFEKLAAPSEYNQVEYFSNVK 160
Query: 542 NPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYME 582
++ D++ NKF A K +D TQP E
Sbjct: 161 PDLFADVI-----NKFMA----------HGKSMDMTQPEGE 186
>pdb|3C9Z|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii), Tetragonal Crystal
Form
pdb|3CA0|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii), Hexagonal Crystal
Form
pdb|3CA1|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii)- Tetragonal Crystal
Form- Complexed To Galactose
pdb|3CA3|A Chain A, Crystal Structure Of Sambucus Nigra Agglutinin Ii
(Sna-Ii)-Tetragonal Crystal Form- Complexed To
N-Acetylgalactosamine
pdb|3CA4|A Chain A, Sambucus Nigra Agglutinin Ii, Tetragonal Crystal Form-
Complexed To Lactose
pdb|3CA5|A Chain A, Crystal Structure Of Sambucus Nigra Agglutinin Ii
(Sna-Ii)-Tetragonal Crystal Form- Complexed To Alpha1
Methylgalactose
pdb|3CAH|A Chain A, Sambucus Nigra Aggutinin Ii. Tetragonal Crystal Form-
Complexed To Fucose
pdb|3CA6|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii)- Tetragonal Crystal
Form- Complexed To Tn Antigen
Length = 258
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 535 MYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTK-LVDFTQPYMESGLVVVAPVQK 593
+ NG+ N ++ + + +L + A GD TI N T+ L T Y L+++ Q
Sbjct: 144 LQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQG 203
Query: 594 LKSSPWAF 601
L S W F
Sbjct: 204 LPSQRWFF 211
>pdb|1V4G|A Chain A, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|B Chain B, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|C Chain C, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|D Chain D, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
Length = 518
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 245 VVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRH 304
+ VN D L ++LG +A ++ WI TD+ ++L+ PVD D ++L + L
Sbjct: 30 TLRVNADGTLATTGHPEALG-SALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHR 88
Query: 305 HT 306
+T
Sbjct: 89 YT 90
>pdb|1VA6|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|1VA6|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|2D32|A Chain A, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|B Chain B, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|C Chain C, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|D Chain D, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D33|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|C Chain C, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|D Chain D, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
Length = 518
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 245 VVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRH 304
+ VN D L ++LG +A ++ WI TD+ ++L+ PVD D ++L + L
Sbjct: 30 TLRVNADGTLATTGHPEALG-SALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHR 88
Query: 305 HT 306
+T
Sbjct: 89 YT 90
>pdb|1XT8|A Chain A, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
pdb|1XT8|B Chain B, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
Length = 292
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 549 VQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAP 590
V+ + NK D + + T R + VDF PYM+ L V P
Sbjct: 99 VEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVP 140
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 545 YNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYME---SGLVVVAPVQKLK 595
+++++ + K D AV I+ R ++ DF+ PY E S LV A V+K K
Sbjct: 63 FDNVLTSLQTGKADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEKYK 116
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 552 VALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVA 589
VA + D A I+I R K++DF++PY + +V+
Sbjct: 64 VASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVS 101
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 552 VALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVA 589
VA + D A I+I R K++DF++PY + +V+
Sbjct: 84 VASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVS 121
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 549 VQQVALNKFDAAVGDITIVTNRTKL--VDFTQPYMESGLVVVAP 590
+ VA + D +G I++ R + + FTQPY SG+ ++ P
Sbjct: 58 ITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 549 VQQVALNKFDAAVGDITIVTNRTKL--VDFTQPYMESGLVVVAP 590
+ VA + D +G I++ R + + FTQPY SG+ ++ P
Sbjct: 58 ITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 88 TTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPL----- 142
T + F IR N S FV + A + + + + + G+ H ++ N+LN
Sbjct: 275 TVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDD 334
Query: 143 --LSFGATDPTLTSLQYPYFLRTTQSDYYQ 170
+S + D +T Y F + ++Y+
Sbjct: 335 SNVSLASEDQIVTKAAYVLFYQRRDDEFYK 364
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 239 MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA-------TDWLPS 280
++S + +++ + IF VA S+G+T Y WI TD +PS
Sbjct: 193 LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPS 241
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 239 MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA-------TDWLPS 280
++S + +++ + IF VA S+G+T Y WI TD +PS
Sbjct: 192 LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPS 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,516,862
Number of Sequences: 62578
Number of extensions: 1156926
Number of successful extensions: 2664
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2432
Number of HSP's gapped (non-prelim): 222
length of query: 945
length of database: 14,973,337
effective HSP length: 108
effective length of query: 837
effective length of database: 8,214,913
effective search space: 6875882181
effective search space used: 6875882181
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)